BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006281
         (652 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225451505|ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080
           [Vitis vinifera]
          Length = 660

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/636 (66%), Positives = 515/636 (80%), Gaps = 2/636 (0%)

Query: 3   MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG  + LSPSLVARVI+P+LL
Sbjct: 1   MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
            HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK  KI LDSSV
Sbjct: 61  HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           YR +I S I GK TQ AF +FNEV     +IGP+ CNSL+A LASDG +  A ++FDEM 
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
           H GV  +++GFGVFIW+FC NA+LG  LS+LDEV K   S INGS+IA+LIIHG C+  R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           FI  LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K  
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG   NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           E+G+I+ A  LF +MLEKGV PDATTYTSLLEGLCQE   ++AFEVF KSV  DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           IL+TF++ +C+ G+FL A+KLL GL+ D+GHSDSHVI LK LADA E+  AIEHIKW+ +
Sbjct: 540 ILNTFILYICKEGNFLFASKLLCGLTYDVGHSDSHVIFLKYLADASEISTAIEHIKWVGD 599

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
           + P+ML  IS ELFA L+SSS PEPIL +L A+QEK
Sbjct: 600 TLPSMLPTISTELFALLASSSKPEPILQMLLAMQEK 635


>gi|296082318|emb|CBI21323.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/635 (66%), Positives = 514/635 (80%), Gaps = 2/635 (0%)

Query: 3   MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG  + LSPSLVARVI+P+LL
Sbjct: 1   MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
            HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK  KI LDSSV
Sbjct: 61  HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           YR +I S I GK TQ AF +FNEV     +IGP+ CNSL+A LASDG +  A ++FDEM 
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
           H GV  +++GFGVFIW+FC NA+LG  LS+LDEV K   S INGS+IA+LIIHG C+  R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           FI  LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K  
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG   NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           E+G+I+ A  LF +MLEKGV PDATTYTSLLEGLCQE   ++AFEVF KSV  DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           IL+TF++ +C+ G+FL A+KLL GL+ D+GHSDSHVI LK LADA E+  AIEHIKW+ +
Sbjct: 540 ILNTFILYICKEGNFLFASKLLCGLTYDVGHSDSHVIFLKYLADASEISTAIEHIKWVGD 599

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
           + P+ML  IS ELFA L+SSS PEPIL +L A+QE
Sbjct: 600 TLPSMLPTISTELFALLASSSKPEPILQMLLAMQE 634


>gi|255543677|ref|XP_002512901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547912|gb|EEF49404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 655

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/641 (66%), Positives = 520/641 (81%), Gaps = 3/641 (0%)

Query: 3   MRPATDLATRISQAIISASNRTRPA--RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL 60
           MRPAT+LATRISQA+ISASN   P   R WTP LE  LH++  RDSLSPSLVA+VI+P L
Sbjct: 2   MRPATELATRISQALISASNSRSPTQTRPWTPSLESVLHRIVSRDSLSPSLVAQVIDPCL 61

Query: 61  LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           LTHHSLALGFFNWASQQP FTH+ L+Y SILKSLSLSRQ NAI+ VLKQVK   +TLDSS
Sbjct: 62  LTHHSLALGFFNWASQQPGFTHNSLTYDSILKSLSLSRQFNAIEYVLKQVKNQNLTLDSS 121

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
             RF+I SLI+G+ TQ A+ VF+E K    DIGPEICNSLLAVL SDGY D  LK+FDEM
Sbjct: 122 TQRFVISSLIRGRKTQDAYLVFSEAKSRTLDIGPEICNSLLAVLGSDGYFDKGLKVFDEM 181

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             RGV F+T+GFGVFIW+FC +A L +VL++LD+V K  NS+INGSVIAVL++HG C+  
Sbjct: 182 LLRGVAFNTVGFGVFIWRFCRDANLSKVLNLLDQV-KEGNSVINGSVIAVLVVHGLCQAS 240

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           RV EA  VL+ELRIR CKPDF+AYRIVAE F+L GS  +   VLK KRKLGVAPR+NDYR
Sbjct: 241 RVNEALWVLNELRIRNCKPDFMAYRIVAEAFRLSGSSADINKVLKMKRKLGVAPRSNDYR 300

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
           +FIL LI +R + E KE+GEVIV G F I+ DVLNALIGSVSSIDP +A++FF+++I KG
Sbjct: 301 DFILSLIAKRLVLEVKEIGEVIVHGDFPIEVDVLNALIGSVSSIDPNTAMLFFHYIIGKG 360

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +PTL TLSNLS+NL +  K DE++EVY VLS+ DYF+D+E YNVM SFLC +G++REAY
Sbjct: 361 MLPTLLTLSNLSRNLSRHGKIDEMLEVYNVLSSKDYFSDLEGYNVMFSFLCKAGKIREAY 420

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
           GV+QEMK+KGL  D+S YN LMEACCREDLLRPAKKLWD+MF  GC  N+KTYNILI KF
Sbjct: 421 GVLQEMKKKGLGTDISMYNCLMEACCREDLLRPAKKLWDEMFVVGCGVNIKTYNILIGKF 480

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           SE+ E+E A+RLFH+MLEKG+AP+ATTYTS+L+GLCQE+   AA E+F+KS+N D  LA+
Sbjct: 481 SEIAEVEEAMRLFHHMLEKGIAPNATTYTSILKGLCQESKFDAAIEIFSKSINQDSKLAQ 540

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600
            +LSTF+I+LC++G FL ATKLL G + D+GHSDSHV+LLK LADA E+ +A+EHIK I+
Sbjct: 541 RLLSTFIINLCKKGQFLAATKLLCGPAHDIGHSDSHVVLLKCLADAEEMSIAVEHIKQIR 600

Query: 601 ESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641
           E+S  MLQ IS+EL A LSSSS  E IL LL A+ +KC++S
Sbjct: 601 EASSLMLQVISSELSALLSSSSKSESILFLLEAISDKCIES 641


>gi|224143615|ref|XP_002336062.1| predicted protein [Populus trichocarpa]
 gi|222869847|gb|EEF06978.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/642 (63%), Positives = 495/642 (77%), Gaps = 32/642 (4%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           R  T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3   RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K   +TLDSS+YR
Sbjct: 63  HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
           F++ SLI+   TQ AFSVFNE+K    D+G E  NSLLA L SDG  +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+ FSTIGFGVFIW+ C N  LG+VL ++DEV  R NS+INGSVIAVLI+HG C+G R  
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA + L+ELRIR  KPDFIAYR+VAE F+ +GSVF+   VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
           LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           TL TLSNL +NLCK  K DEL+EVY+VLS+N+YF+DMESYNVM SFLC  GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           QEM++KGLDPD+S YNSL+E  CREDLLRPAK+LWD+MF  GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+IE A RLF++MLEKGV PDATT+  LLE LCQET  + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
            T +++LC +                              AD+ EV +A+EH K I+ +S
Sbjct: 542 KTLILNLCGK------------------------------ADSEEVPIAVEHAKQIRGNS 571

Query: 604 PTMLQEISAELFASLSSSSYPEPILLLLHAL-QEKCLDSEIG 644
           P+MLQ I  +L A  SSSS PEPIL LL AL QE+ +  + G
Sbjct: 572 PSMLQVICTKLLAFSSSSSNPEPILHLLQALSQERVISIDFG 613


>gi|449490189|ref|XP_004158532.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Cucumis sativus]
          Length = 640

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/635 (62%), Positives = 494/635 (77%), Gaps = 2/635 (0%)

Query: 3   MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           MRP   +LATR+S+AI+S SN+T PA  WTP LEQ LH+LG R  L+PSLV++VI+P+LL
Sbjct: 1   MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           +HHSLALGFFNWASQQP FTH+  SY+SILKSLSLSR    I S+LKQVK  KI LD SV
Sbjct: 61  SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           YR +I SLI  K T  AF VFNEV      IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            + + F+T+GFGVFIW+ C N  + +VL+M+D  R   NS INGSVIA LIIHG C+  R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGART-NNSDINGSVIATLIIHGLCEASR 239

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EEA  +LDEL+ R CKPDF+ Y I+ E F+   +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           ++  LI  RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL TL NLS+NLCK  K+DEL+EV++VL  N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +  +IE AL L+ +ML K V PD   YTSLL+GLCQ++ L+AAFEVF+KSV  DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +LSTF++ LC+ GHFL A+KLLRGL+SD+ H DSHV LLK  ADA EV +A +H++W+QE
Sbjct: 540 LLSTFILCLCKVGHFLAASKLLRGLASDVAHPDSHVTLLKGFADAGEVSLAKQHVEWVQE 599

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
           +SP+ML  IS EL A L SS   +PIL +L  +QE
Sbjct: 600 TSPSMLSVISTELLAFLPSSPKADPILEILQTVQE 634


>gi|449442054|ref|XP_004138797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Cucumis sativus]
          Length = 635

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/635 (62%), Positives = 491/635 (77%), Gaps = 7/635 (1%)

Query: 3   MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           MRP   +LATR+S+AI+S SN+T PA  WTP LEQ LH+LG R  L+PSLV++VI+P+LL
Sbjct: 1   MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           +HHSLALGFFNWASQQP FTH+  SY+SILKSLSLSR    I S+LKQVK  KI LD SV
Sbjct: 61  SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           YR +I SLI  K T  AF VFNEV      IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            + + F+T+GFGVFIW+ C N  + +VL+M+D  R   NS INGSVIA LIIHG C+  R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGARTN-NSDINGSVIATLIIHGLCEASR 239

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EEA  +LDEL+ R CKPDF+ Y I+ E F+   +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           ++  LI  RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL TL NLS+NLCK  K+DEL+EV++VL  N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +  +IE AL L+ +ML K V PD   YTSLL+GLCQ++ L+AAFEVF+KSV  DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +LSTF+  LC   HFL A+KLLRGL+SD+ H DSHV LLK  ADA EV +A +H++W+QE
Sbjct: 540 LLSTFI--LC---HFLAASKLLRGLASDVAHPDSHVTLLKGFADAGEVSLAKQHVEWVQE 594

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
           +SP+ML  IS EL A L SS   +PIL +L  +QE
Sbjct: 595 TSPSMLSVISTELLAFLPSSPKADPILEILQTVQE 629


>gi|224055765|ref|XP_002298642.1| predicted protein [Populus trichocarpa]
 gi|222845900|gb|EEE83447.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/554 (68%), Positives = 454/554 (81%), Gaps = 1/554 (0%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           R  T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3   RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K   +TLDSS+YR
Sbjct: 63  HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
           F++ SLI+   TQ AFSVFNE+K    D+G E  NSLLA L SDG  +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+ FSTIGFGVFIW+ C N  LG+VL ++DEV  R NS+INGSVIAVLI+HG C+G R  
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA + L+ELRIR  KPDFIAYR+VAE F+ +GSVF+   VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
           LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           TL TLSNL +NLCK  K DEL+EVY+VLS+N+YF+DMESYNVM SFLC  GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           QEM++KGLDPD+S YNSL+E  CREDLLRPAK+LWD+MF  GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+IE A RLF++MLEKGV PDATT+  LLE LCQET  + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541

Query: 544 STFMISLCRRGHFL 557
            T +++LC +  FL
Sbjct: 542 KTLILNLCGKVVFL 555


>gi|356561647|ref|XP_003549091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Glycine max]
          Length = 647

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/627 (59%), Positives = 484/627 (77%), Gaps = 4/627 (0%)

Query: 10  ATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALG 69
           A  +S+A+ISAS +     +W P +E+ LH+LG R  LSPSLV  VI+P+L +HHSLALG
Sbjct: 8   ARGLSKAVISASKKRG---RWGPEVEERLHRLGWRQRLSPSLVGNVIDPFLKSHHSLALG 64

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           FFNWASQQP F+H+P ++HS+LKSLS +   +AI S+LKQ K     +  S++  II S 
Sbjct: 65  FFNWASQQPGFSHTPFTFHSLLKSLSHTNHFSAIHSLLKQAKALNFPIQPSLFSSIIASH 124

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           +     ++AFS++  V     +IG    NSLLA LASDG +++A ++FDEMS RGV FST
Sbjct: 125 VARNRARQAFSLYCGVGSLSAEIGVATSNSLLAALASDGCLESARRVFDEMSERGVGFST 184

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
           +GFGVF+W+ C    L +V+S+LDEV +   S INGSV+AVLI+HG C   +V EA  +L
Sbjct: 185 LGFGVFVWRVCGEGDLEKVVSLLDEVGEC-GSGINGSVVAVLIVHGLCHASKVSEALWIL 243

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           DELR R  KPDF+AY +VA  F+ MG+V +   VLK KRKLGVAPR++DYR+ ILGL+ E
Sbjct: 244 DELRSRGWKPDFMAYWVVAAAFRSMGNVADEVKVLKMKRKLGVAPRSSDYRDLILGLVSE 303

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           RRI EAKE+GEVIV G F ++DDVLNALIGSVSS+DP SAIVFFNFM+EK R PT+ T+S
Sbjct: 304 RRIYEAKEVGEVIVGGNFPVEDDVLNALIGSVSSVDPGSAIVFFNFMVEKERFPTILTIS 363

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           NLS+NLC   K DEL+EV+ VL++++YF D+E YNVMVSFLC +GR+RE Y V+QEMK+K
Sbjct: 364 NLSRNLCGHGKVDELLEVFHVLNSHNYFKDVEGYNVMVSFLCKAGRVREGYSVLQEMKKK 423

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  P+V+ YN +MEACC+EDLLRPA+KLWD+MF+SGC GNLKTYNILI KFSEVG+ E A
Sbjct: 424 GFRPNVTSYNYIMEACCKEDLLRPARKLWDEMFSSGCCGNLKTYNILIQKFSEVGQAEEA 483

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             LF++ML+KGV PD T+YT LLEGLCQE  L+AAFE++NKSV  D++LAR ILS+F+ S
Sbjct: 484 HMLFYHMLDKGVEPDVTSYTLLLEGLCQEDKLEAAFELYNKSVKQDIILARDILSSFISS 543

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609
           LCR+GH + A+KLL  L+ D+G ++SHVILL+SLA+A+E+ +AIEH+KW+QE SP++LQ+
Sbjct: 544 LCRKGHLMAASKLLCSLNHDIGCAESHVILLESLANAQEIPIAIEHLKWVQEKSPSILQD 603

Query: 610 ISAELFASLSSSSYPEPILLLLHALQE 636
           I   L ASLSS++ PEPIL  L  +Q+
Sbjct: 604 ICTGLLASLSSATCPEPILQFLKRIQD 630


>gi|297811525|ref|XP_002873646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319483|gb|EFH49905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 634

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/634 (56%), Positives = 481/634 (75%), Gaps = 3/634 (0%)

Query: 3   MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
           MRPA +LA RI + ++  S  +R AR W+P +EQ+LH LG R S+SPSLVARVI+P+LL 
Sbjct: 1   MRPAAELAVRIGRELLKVSGSSRSARIWSPSVEQSLHGLGFRHSISPSLVARVIDPFLLN 60

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           HHSLALGFFNWA+QQP ++H  +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61  HHSLALGFFNWAAQQPGYSHDSVSYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           R +I +L+ G+ +Q AF V  E      +I P++CN LLA L SD   D A K+F +M  
Sbjct: 121 RSLIDALVLGRKSQSAFWVLEEALSTGREIHPDVCNRLLAALTSDRCFDYAQKLFVKMRQ 180

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           RGV  +T+GFGV+I  FC +++  Q+L ++DEV+K  NS INGS+IA+LI+HG CK  R 
Sbjct: 181 RGVSLNTLGFGVYIGSFCTSSETDQLLRLVDEVKK-ANSNINGSIIALLILHGLCKSSRE 239

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            +AF +L+ELR  +CKPDF+AYRI+AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRIIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
           IL LI  +R+ EAKE+ EVIVSG F +D+D+L+ALIGSVS+IDP SA+ F  +M+  G++
Sbjct: 300 ILDLISAKRLMEAKEVAEVIVSGNFPMDNDILDALIGSVSAIDPDSAVEFLVYMVSTGKL 359

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + TLS LSKNLC+ +KSD L++ Y++LS+  YF+D+ESY++M+SFLC +GR+RE Y  
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSDLESYSLMISFLCKAGRVREGYTA 419

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EMK+KGLDPDVS YN+L++ACCR +++RPAKKLWD+MF  GC  NL TYN+LI K SE
Sbjct: 420 LHEMKKKGLDPDVSLYNALIDACCRAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
            GE E +LRLF  MLEKG+ PD T Y SL+EGLC+ET L+AA EVF   +  D   +AR 
Sbjct: 480 EGEAEESLRLFQKMLEKGIEPDETIYMSLIEGLCKETKLEAALEVFIMCMERDNKTVARR 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +LS F+++LC  GHF  A++LLR     L H+ +HV+LLK +ADA+EVE+ I H+KWI+E
Sbjct: 540 LLSAFVLNLCSNGHFSEASQLLRK-QDHLKHTSAHVVLLKCVADAKEVEIGIRHMKWIKE 598

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
            SP+++  IS++L AS  SSS P+ IL  + A++
Sbjct: 599 VSPSLVHTISSDLLASFCSSSDPDSILPFIRAIE 632


>gi|30684737|ref|NP_196912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635762|sp|Q9FMU2.2|PP380_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14080
 gi|332004602|gb|AED91985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/634 (55%), Positives = 484/634 (76%), Gaps = 3/634 (0%)

Query: 3   MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
           MRPAT+LA RI + ++  S  +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL 
Sbjct: 1   MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           HHSLALGFFNWA+QQP ++H  +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61  HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           R +I +L+ G+  Q AF V  E     ++I P++CN LLA L SDG  D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           +GV  +T+GFGV+I  FC +++  Q+L ++DEV+K  N  INGS+IA+LI+H  CK  R 
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            +AF +L+ELR  +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
           IL LI  +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F  +M+  G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + TLS LSKNLC+ +KSD L++ Y++LS+  YF++++SY++M+SFLC +GR+RE+Y  
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF  GC  NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
            GE E +LRLF  MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K +  D   + R 
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +LS F+++LC  GH   A++LLR     L H+ +HV+LLK +ADA+EVE+ I H++WI+E
Sbjct: 540 VLSEFVLNLCSNGHSGEASQLLRE-REHLEHTGAHVVLLKCVADAKEVEIGIRHMQWIKE 598

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
            SP+++  IS++L AS  SSS P+ IL  + A++
Sbjct: 599 VSPSLVHTISSDLLASFCSSSDPDSILPFIRAIE 632


>gi|9757789|dbj|BAB08287.1| unnamed protein product [Arabidopsis thaliana]
          Length = 663

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/663 (52%), Positives = 484/663 (73%), Gaps = 32/663 (4%)

Query: 3   MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
           MRPAT+LA RI + ++  S  +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL 
Sbjct: 1   MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           HHSLALGFFNWA+QQP ++H  +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61  HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           R +I +L+ G+  Q AF V  E     ++I P++CN LLA L SDG  D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           +GV  +T+GFGV+I  FC +++  Q+L ++DEV+K  N  INGS+IA+LI+H  CK  R 
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            +AF +L+ELR  +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
           IL LI  +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F  +M+  G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + TLS LSKNLC+ +KSD L++ Y++LS+  YF++++SY++M+SFLC +GR+RE+Y  
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF  GC  NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
            GE E +LRLF  MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K +  D   + R 
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539

Query: 542 ILSTFMISLCR-----------------------------RGHFLVATKLLRGLSSDLGH 572
           +LS F+++LC                               GH   A++LLR     L H
Sbjct: 540 VLSEFVLNLCSNGEREQICLLVFSNCLMSRYLLIRLVCMCEGHSGEASQLLRE-REHLEH 598

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLH 632
           + +HV+LLK +ADA+EVE+ I H++WI+E SP+++  IS++L AS  SSS P+ IL  + 
Sbjct: 599 TGAHVVLLKCVADAKEVEIGIRHMQWIKEVSPSLVHTISSDLLASFCSSSDPDSILPFIR 658

Query: 633 ALQ 635
           A++
Sbjct: 659 AIE 661


>gi|357503669|ref|XP_003622123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497138|gb|AES78341.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 495

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/461 (54%), Positives = 338/461 (73%), Gaps = 14/461 (3%)

Query: 188 STIGFGVFIWK--FCEN-----------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           S +G+ +  ++  +CEN             +G+VL ++DEV +     INGSV+AVLI+H
Sbjct: 12  SWVGYDICNYEGFYCENPPGNKSVIALEGDMGKVLGLVDEVGEC-GFEINGSVVAVLIVH 70

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G C+  +V+EA  +L ELR R  KPDF+AY +VA EF+ MG+V     VLK KRKLGVAP
Sbjct: 71  GLCEVGKVDEAMVMLGELRERGWKPDFMAYWVVANEFRKMGNVVVEIKVLKMKRKLGVAP 130

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
           R+ DY+ FI  L+ E+RI EAK  GEVIV G F ++DDV N LI SVS IDP  AIVFFN
Sbjct: 131 RSGDYKGFIFELVSEKRILEAKMTGEVIVGGNFVVEDDVFNVLIESVSDIDPVGAIVFFN 190

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +++EK R  ++S+L++LS+NLC+  K DEL+EV++VL   +YF D+E YNVMVS+LC +G
Sbjct: 191 YVVEKERFLSVSSLNSLSRNLCRVGKVDELLEVFRVLDCRNYFKDVEGYNVMVSWLCEAG 250

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R++E Y V+QEMK+KGL+PDVS YN +MEACC+EDLLRPA+KLWD+MFASGC GNLKTYN
Sbjct: 251 RVKEGYAVLQEMKKKGLNPDVSSYNYVMEACCKEDLLRPARKLWDEMFASGCCGNLKTYN 310

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +LI KF E G IE A  LF+ M++KGV PD+ +YT LL+G C+E  L+ AFE++++SV  
Sbjct: 311 VLIHKFLEEGLIEEARTLFNRMVDKGVEPDSASYTFLLQGFCREDKLEEAFELYSRSVRQ 370

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
           D+ +AR IL +F++SLC++GH   A+KLL  LS D+G  +SHV LLK LADARE++ AIE
Sbjct: 371 DITIARDILGSFILSLCKKGHMTAASKLLCSLSHDIGRPESHVALLKCLADAREIQTAIE 430

Query: 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
           H++W++  SP+ML +I   L AS+S +  PEPIL  L  +Q
Sbjct: 431 HLRWVRHKSPSMLPDICTGLLASISVAKCPEPILQFLQRMQ 471


>gi|357115165|ref|XP_003559362.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Brachypodium distachyon]
          Length = 620

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/489 (50%), Positives = 335/489 (68%), Gaps = 1/489 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +CNSLLA LAS G +  A K+FD M  R  E  T+GFGVF+          + L +++ V
Sbjct: 122 LCNSLLAALASSGSLAAARKVFDRMLARAAELDTVGFGVFVKNVGRRDGFDEALRLVETV 181

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R    IN SV+A +++ G C+  R+E+A++ L+++R+R  KPDFIAYRIV+E ++  G
Sbjct: 182 HHR-GDWINKSVVAAMVVDGLCREGRIEDAWRALEDMRLRGWKPDFIAYRIVSERYREAG 240

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V E   +LK+KRKLGVAPR  DYREF+L L+ +R+I EAKE+GE IV G F IDDDVLN
Sbjct: 241 RVEEEGKILKQKRKLGVAPRKVDYREFLLALLSDRQISEAKEMGEAIVLGDFPIDDDVLN 300

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            LI SVS ID  +AI+F  FMIEK R+P+   L  L +NLCK  K DE+ E+++VL    
Sbjct: 301 VLICSVSEIDADAAIMFCKFMIEKDRLPSTEMLVQLCENLCKNRKGDEMWEIFRVLLDRG 360

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y T    Y+++VSFL  +G++REAY V++E+K K LDP +S YNSLM A CR DLLRPAK
Sbjct: 361 YCTSEREYHLVVSFLGKAGKVREAYSVLKEIKGKRLDPGISSYNSLMVALCRNDLLRPAK 420

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KLWD+MF SGCS NL+TYNILI+KF+E+GE +   +LF +ML KGVAPD  TYTS++  +
Sbjct: 421 KLWDEMFTSGCSPNLQTYNILITKFAEIGESQEVQQLFDHMLLKGVAPDGATYTSVITVM 480

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           CQE   + A E+FNKSV  D  LA S+L+ F+++LC++G F  A  ++ G+ S++  S+S
Sbjct: 481 CQEKKYKQAEEIFNKSVVQDPELASSVLTVFILALCKQGSFKTALSVMSGVPSNIESSNS 540

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
           HVILLK L D  E+EMA EHIKWI     +    I  EL ASLS+S+  +P+  L+H L 
Sbjct: 541 HVILLKCLTDVEEIEMAFEHIKWIMGHCSSTFHSIMNELMASLSTSASLQPVTKLVHYLH 600

Query: 636 EKCLDSEIG 644
            + L  E+G
Sbjct: 601 SQGLADEVG 609


>gi|222625913|gb|EEE60045.1| hypothetical protein OsJ_12833 [Oryza sativa Japonica Group]
          Length = 659

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/574 (43%), Positives = 370/574 (64%), Gaps = 8/574 (1%)

Query: 81  THSPLSYHSILKSLSLSRQ------INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           T +P ++H+ L SL+   +      + +I + L + +   + L  +       +L++   
Sbjct: 81  TSTPQAFHAHLASLAAPSRAAHPATLRSILAALSRARAAGLPLLPATRVLAASALLRHGR 140

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
              A + F  V  +     P +CNSLLA LAS G + +A K+FD M  R VE  T+GFGV
Sbjct: 141 LPDALAHFGLVPDSAALPAP-LCNSLLAALASSGSLVSARKVFDRMIGRAVELDTVGFGV 199

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
           F+        L +VL ++  VR  +   ++ SV+AV++  G C+  R+E+A++ L+++R 
Sbjct: 200 FVKNVGRRHGLAEVLRLVQAVR-HQGDRVDRSVVAVMVADGLCREGRIEDAWQALEDMRF 258

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  KPDF+AYR+V+E F+  G   E   +LK+KRKLGVAPR  DYREF+  L+  R+I E
Sbjct: 259 QGWKPDFVAYRVVSEAFREAGRTEEEGRILKQKRKLGVAPRKEDYREFMFALLSSRQIGE 318

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AKE+ E IV G F I+DDVLNALI SVS ID  +A++F  FMI K R P+   L +L ++
Sbjct: 319 AKEIAEAIVLGDFPINDDVLNALICSVSEIDVDAAVMFCKFMIGKERFPSSDMLIHLCES 378

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC   K D++ E ++VL    Y TD+  Y+++VSFL  +G++REAY V++E+KRK L+PD
Sbjct: 379 LCTNGKGDDMWEFFRVLLDKGYCTDVRDYHLVVSFLGKAGKVREAYDVLKEVKRKRLEPD 438

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +S YNSLME+ CR++LLRPAKKLWD+MF SGCS NL+TYNILI+KF+E+ E E A +LF 
Sbjct: 439 ISSYNSLMESLCRKNLLRPAKKLWDEMFTSGCSPNLQTYNILITKFAEINESEQAQQLFD 498

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M +KGV+PD TTYTS++  LCQE   + A E+F K V  D  +A S+L+ F+++LC++G
Sbjct: 499 RMFQKGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALCKQG 558

Query: 555 HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614
           +F  A  +L  + S++   +SHVILLK L D  EV++AIEHIK I+ +  +  Q I  EL
Sbjct: 559 NFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRSNFSSSFQNIINEL 618

Query: 615 FASLSSSSYPEPILLLLHALQEKCLDSEIGAGKG 648
            ASLS+S+  +P+  L+  L  + +  ++G   G
Sbjct: 619 MASLSTSASLQPVTRLISYLNSQGIVHDVGPWMG 652


>gi|12957716|gb|AAK09234.1|AC084320_21 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711404|gb|ABF99199.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 615

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/574 (43%), Positives = 370/574 (64%), Gaps = 8/574 (1%)

Query: 81  THSPLSYHSILKSLSLSRQ------INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           T +P ++H+ L SL+   +      + +I + L + +   + L  +       +L++   
Sbjct: 37  TSTPQAFHAHLASLAAPSRAAHPATLRSILAALSRARAAGLPLLPATRVLAASALLRHGR 96

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
              A + F  V  +     P +CNSLLA LAS G + +A K+FD M  R VE  T+GFGV
Sbjct: 97  LPDALAHFGLVPDSAALPAP-LCNSLLAALASSGSLVSARKVFDRMIGRAVELDTVGFGV 155

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
           F+        L +VL ++  VR  +   ++ SV+AV++  G C+  R+E+A++ L+++R 
Sbjct: 156 FVKNVGRRHGLAEVLRLVQAVR-HQGDRVDRSVVAVMVADGLCREGRIEDAWQALEDMRF 214

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  KPDF+AYR+V+E F+  G   E   +LK+KRKLGVAPR  DYREF+  L+  R+I E
Sbjct: 215 QGWKPDFVAYRVVSEAFREAGRTEEEGRILKQKRKLGVAPRKEDYREFMFALLSSRQIGE 274

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AKE+ E IV G F I+DDVLNALI SVS ID  +A++F  FMI K R P+   L +L ++
Sbjct: 275 AKEIAEAIVLGDFPINDDVLNALICSVSEIDVDAAVMFCKFMIGKERFPSSDMLIHLCES 334

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC   K D++ E ++VL    Y TD+  Y+++VSFL  +G++REAY V++E+KRK L+PD
Sbjct: 335 LCTNGKGDDMWEFFRVLLDKGYCTDVRDYHLVVSFLGKAGKVREAYDVLKEVKRKRLEPD 394

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +S YNSLME+ CR++LLRPAKKLWD+MF SGCS NL+TYNILI+KF+E+ E E A +LF 
Sbjct: 395 ISSYNSLMESLCRKNLLRPAKKLWDEMFTSGCSPNLQTYNILITKFAEINESEQAQQLFD 454

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M +KGV+PD TTYTS++  LCQE   + A E+F K V  D  +A S+L+ F+++LC++G
Sbjct: 455 RMFQKGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALCKQG 514

Query: 555 HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614
           +F  A  +L  + S++   +SHVILLK L D  EV++AIEHIK I+ +  +  Q I  EL
Sbjct: 515 NFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRSNFSSSFQNIINEL 574

Query: 615 FASLSSSSYPEPILLLLHALQEKCLDSEIGAGKG 648
            ASLS+S+  +P+  L+  L  + +  ++G   G
Sbjct: 575 MASLSTSASLQPVTRLISYLNSQGIVHDVGPWMG 608


>gi|125545926|gb|EAY92065.1| hypothetical protein OsI_13766 [Oryza sativa Indica Group]
          Length = 615

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/574 (43%), Positives = 369/574 (64%), Gaps = 8/574 (1%)

Query: 81  THSPLSYHSILKSLSLSRQ------INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           T +P ++H+ L SL+   +      + +I + L + +   + L  +       +L++   
Sbjct: 37  TSTPQAFHAHLASLAAPSRAAHPATLRSILAALSRARAAGLPLLPATRVLAASALLRHGR 96

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
              A + F  V  +     P +CNSLLA LAS G +  A K+FD M  R +E  T+GFGV
Sbjct: 97  LPDALAHFGLVPDSAALPAP-LCNSLLAALASSGSLVTARKVFDRMIGRAIELDTVGFGV 155

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
           F+        L +VL ++  VR  +   ++ SV+AV++  G C+  R+E+A++ L+++R 
Sbjct: 156 FVKNVGRRHGLAEVLRLVQAVR-HQGDRVDRSVVAVMVADGLCREGRIEDAWQALEDMRF 214

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  KPDF+AYR+V+E F+  G   E   +LK+KRKLGVAPR  DYREF+  L+  R+I E
Sbjct: 215 QGWKPDFVAYRVVSEAFREAGRTEEEGRILKQKRKLGVAPRKEDYREFMFALLSSRQIGE 274

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AKE+ E IV G F I+DDVLNALI SVS ID  +A++F  FMI K R P+   L +L ++
Sbjct: 275 AKEIAEAIVLGDFPINDDVLNALICSVSEIDVDAAVMFCKFMIGKERFPSSDMLIHLCES 334

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC   K D++ E ++VL    Y TD+  Y+++VSFL  +G++REAY V++E+KRK L+PD
Sbjct: 335 LCTNGKGDDMWEFFRVLLDKGYCTDVRDYHLVVSFLGKAGKVREAYDVLKEVKRKRLEPD 394

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +S YNSLME+ CR++LLRPAKKLWD+MF SGCS NL+TYNILI+KF+E+ E E A +LF 
Sbjct: 395 ISSYNSLMESLCRKNLLRPAKKLWDEMFTSGCSPNLQTYNILITKFAEINESEQAQQLFD 454

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M +KGV+PD TTYTS++  LCQE   + A E+F K V  D  +A S+L+ F+++LC++G
Sbjct: 455 RMFQKGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALCKQG 514

Query: 555 HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614
           +F  A  +L  + S++   +SHVILLK L D  EV++AIEHIK I+ +  +  Q I  EL
Sbjct: 515 NFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRSNFSSSFQNIINEL 574

Query: 615 FASLSSSSYPEPILLLLHALQEKCLDSEIGAGKG 648
            ASLS+S+  +P+  L+  L  + +  ++G   G
Sbjct: 575 MASLSTSASLQPVTRLISYLNSQGIVHDVGPWMG 608


>gi|414588666|tpg|DAA39237.1| TPA: hypothetical protein ZEAMMB73_057781 [Zea mays]
          Length = 610

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/484 (47%), Positives = 334/484 (69%), Gaps = 3/484 (0%)

Query: 156 ICNSLLAVLASD-GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQVLSMLD 213
           +CNSLL+ LAS  G + +A K+FD M    VE +T+GFGVF+     ++  L +VL ++D
Sbjct: 115 LCNSLLSALASSTGSLGHARKVFDRMLAGAVELNTVGFGVFVNAAGRKDDGLAEVLRLVD 174

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            V   +   +N SV+  +++ G C+  R+E+A++ +DE+R+R  KPDF+AYRIVAE F++
Sbjct: 175 VV-GCQGRRVNRSVVVAMLVDGMCREGRIEDAWRAMDEMRLRGWKPDFLAYRIVAEGFRV 233

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G V E   +LK+KRKLGVAPR ++YRE +L L+  R   EAKE+ E +V G F IDDDV
Sbjct: 234 QGRVEEEGRILKQKRKLGVAPRKDEYRECVLVLVSNRLFREAKEIAEAVVLGDFPIDDDV 293

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L+GSVS ID   A +F  FM+ KGR P+   L++L ++LCK  K DE+ E+ +VL  
Sbjct: 294 LNILVGSVSEIDVDGAAMFCKFMMGKGRFPSTEMLAHLCESLCKSGKGDEMWEILRVLLD 353

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
             Y  +   Y+++VSFL  +G++REAY V++E+K+K L+PD+S YNSLMEA CR DLLRP
Sbjct: 354 KGYCRNARGYHLVVSFLGKAGKVREAYDVLKEVKKKRLEPDISSYNSLMEALCRNDLLRP 413

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AKKLWD+MF SGCS NL+TYNILI+KF+E+GE +   +LF +M +KGVAPD  TYTS + 
Sbjct: 414 AKKLWDEMFTSGCSPNLQTYNILITKFTEMGESQEVQQLFDHMFQKGVAPDGATYTSFIN 473

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
            LCQE   + A EVFNKS   D  +A  +LS+F+++LC++G+F  A  ++  + S++ + 
Sbjct: 474 MLCQENKYERALEVFNKSWMQDAGVASFVLSSFILALCKQGNFKAALSVMCNVPSNVENL 533

Query: 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633
           +SH+ILLK L D  EVEMAIEH++WI+ +  +  + I  E  ASLS+S+  + +  L+  
Sbjct: 534 NSHIILLKHLTDVGEVEMAIEHLEWIRSNCSSSFENIMNEFMASLSTSASLQHVTKLIQY 593

Query: 634 LQEK 637
           L  +
Sbjct: 594 LHSR 597



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           YH ++  L  + ++     VLK+VK  ++  D S Y  ++ +L +    + A  +++E+ 
Sbjct: 363 YHLVVSFLGKAGKVREAYDVLKEVKKKRLEPDISSYNSLMEALCRNDLLRPAKKLWDEMF 422

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            +      +  N L+      G      ++FD M  +GV      +  FI   C+  K  
Sbjct: 423 TSGCSPNLQTYNILITKFTEMGESQEVQQLFDHMFQKGVAPDGATYTSFINMLCQENKYE 482

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGF----CKGKRVEEAFKVL 249
           + L + ++      S +  + +A  ++  F    CK    + A  V+
Sbjct: 483 RALEVFNK------SWMQDAGVASFVLSSFILALCKQGNFKAALSVM 523


>gi|357503663|ref|XP_003622120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497135|gb|AES78338.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/431 (50%), Positives = 291/431 (67%), Gaps = 46/431 (10%)

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           LG+VL  +DEV +     INGS++ VLI+HG C+  +V+E              PDF+AY
Sbjct: 447 LGKVLGFMDEVGEC-GFEINGSIVVVLIVHGLCEVGKVDE--------------PDFMAY 491

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            +VA EF+ +G+V     VLK KRKLGVAPR  DY+ FI  L+ E+RI EAK  GEVIV 
Sbjct: 492 WVVANEFRKIGNVVVEIKVLKMKRKLGVAPRNGDYKGFIFELVSEKRILEAKMTGEVIVG 551

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           G F ++DDV N LI SVS IDP  AIVFFN+++EK R  ++S+L++LS+NLC+  K DEL
Sbjct: 552 GNFVVEDDVFNVLIESVSDIDPVGAIVFFNYVVEKERFLSVSSLNSLSRNLCRVGKVDEL 611

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +EV++VL   +YF D+E YNVM                  EMK+KGL+PDVS YN +MEA
Sbjct: 612 LEVFRVLDCRNYFKDVEGYNVM------------------EMKKKGLNPDVSSYNYVMEA 653

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC+EDLLRPA+KLWD+MFASGC GNLKTYN+LI KF + G IE A  LF+ M++KGV PD
Sbjct: 654 CCKEDLLRPARKLWDEMFASGCCGNLKTYNVLIHKFLKEGLIEEARTLFNRMVDKGVEPD 713

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           + +YT LL+G CQE  L+ AFE++++SV  D+ +AR IL +F++SLC++GH   A     
Sbjct: 714 SASYTFLLQGFCQEDKLEEAFELYSRSVRQDITIARDILGSFILSLCKKGHMTDA----- 768

Query: 565 GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624
                    +   +LLK LADARE++ AIEH++W+Q  SP+MLQ+I   L AS+S +  P
Sbjct: 769 --------QNRTWLLLKCLADAREIQTAIEHLRWVQHKSPSMLQDICTGLLASISVAKCP 820

Query: 625 EPILLLLHALQ 635
           EPIL  L  +Q
Sbjct: 821 EPILQFLQRMQ 831


>gi|115455731|ref|NP_001051466.1| Os03g0782900 [Oryza sativa Japonica Group]
 gi|113549937|dbj|BAF13380.1| Os03g0782900, partial [Oryza sativa Japonica Group]
          Length = 284

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/276 (48%), Positives = 194/276 (70%)

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           ++LC   K D++ E ++VL    Y TD+  Y+++VSFL  +G++REAY V++E+KRK L+
Sbjct: 2   ESLCTNGKGDDMWEFFRVLLDKGYCTDVRDYHLVVSFLGKAGKVREAYDVLKEVKRKRLE 61

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD+S YNSLME+ CR++LLRPAKKLWD+MF SGCS NL+TYNILI+KF+E+ E E A +L
Sbjct: 62  PDISSYNSLMESLCRKNLLRPAKKLWDEMFTSGCSPNLQTYNILITKFAEINESEQAQQL 121

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  M +KGV+PD TTYTS++  LCQE   + A E+F K V  D  +A S+L+ F+++LC+
Sbjct: 122 FDRMFQKGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALCK 181

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612
           +G+F  A  +L  + S++   +SHVILLK L D  EV++AIEHIK I+ +  +  Q I  
Sbjct: 182 QGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRSNFSSSFQNIIN 241

Query: 613 ELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGKG 648
           EL ASLS+S+  +P+  L+  L  + +  ++G   G
Sbjct: 242 ELMASLSTSASLQPVTRLISYLNSQGIVHDVGPWMG 277



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           YH ++  L  + ++     VLK+VK  ++  D S Y  ++ SL +    + A  +++E+ 
Sbjct: 32  YHLVVSFLGKAGKVREAYDVLKEVKRKRLEPDISSYNSLMESLCRKNLLRPAKKLWDEMF 91

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            +      +  N L+   A     + A ++FD M  +GV      +   I   C+  K  
Sbjct: 92  TSGCSPNLQTYNILITKFAEINESEQAQQLFDRMFQKGVSPDVTTYTSVINMLCQEKKYE 151

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
           Q + +  +   ++   +  SV+ V I+   CK    + A  VL
Sbjct: 152 QAVEIFTKCVVQDTE-VASSVLTVFIL-ALCKQGNFKGALSVL 192



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 115/290 (39%), Gaps = 23/290 (7%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L ++G  D+  + F  +  +G       + + +    +  K+ +   +L EV+++     
Sbjct: 4   LCTNGKGDDMWEFFRVLLDKGYCTDVRDYHLVVSFLGKAGKVREAYDVLKEVKRKRLEPD 63

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             S  +++     C+   +  A K+ DE+    C P+   Y I+  +F  +    + + +
Sbjct: 64  ISSYNSLM--ESLCRKNLLRPAKKLWDEMFTSGCSPNLQTYNILITKFAEINESEQAQQL 121

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
             +  + GV+P    Y   I  L  E++  +A E+    V     +   VL   I ++  
Sbjct: 122 FDRMFQKGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALCK 181

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSN----------LSKNLCKRNKSDELVEVYKVLSA 393
                     NF   KG +  LS + +          L K L    + D  +E  K + +
Sbjct: 182 QG--------NF---KGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRS 230

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
           N   +     N +++ L TS  L+    +I  +  +G+  DV  +  LME
Sbjct: 231 NFSSSFQNIINELMASLSTSASLQPVTRLISYLNSQGIVHDVGPWMGLME 280


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 139/561 (24%), Positives = 248/561 (44%), Gaps = 45/561 (8%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           L PS+V RV+    L     A+ FF+W + QP + HS  + + +L +    ++      +
Sbjct: 97  LVPSVVGRVLQQ--LDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDL 154

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVL 164
            K  +    + DS  Y  +I    + ++ Q+A+ + +E++     I P   + N+++  L
Sbjct: 155 FKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK--RGIVPHNAVYNTIIKGL 212

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G +D+AL  + +M  R    S I + + +   C++A++     +L+++   E     
Sbjct: 213 CDNGRVDSALVHYRDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMI--EAGCAP 269

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    +I+GFCK   ++EA  + +++    C PD   Y I+ + +       +   +L
Sbjct: 270 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLL 329

Query: 285 KKKRKLGVAPRTNDYRE--------------FILGLIVERRICE---------------- 314
           ++  K G  P    Y                F L  ++ RR C+                
Sbjct: 330 QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKV 389

Query: 315 -----AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
                A EL +++       D    N +I G+  +     A      M E G  P + T 
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           +++   LCK ++ DE  EVY+VL    YF D+ + + ++  LC S RL +A  +++EM+R
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G  PDV  Y  L+   C+ D L  +   + +M   GC   + TY+I+I K  +   +  
Sbjct: 510 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 569

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
              L   MLE+GV PDA  YTS+++GLC+  +   A+E++               +  + 
Sbjct: 570 GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629

Query: 549 SLCRRGHFLVATKLLRGLSSD 569
            LC+      A  LL  + SD
Sbjct: 630 KLCKVSRLDEAIHLLEVMESD 650



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 207/505 (40%), Gaps = 19/505 (3%)

Query: 38  LHQLGLRDSLSPSLVARVI------NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSIL 91
           +H   ++ + +PS++   I          ++  SL L     A   PN     ++Y++++
Sbjct: 223 VHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNV----VTYNTLI 278

Query: 92  KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCE 150
                   ++    +  Q+  N  + D   Y  +I    + +  Q    +  E VK+ CE
Sbjct: 279 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 338

Query: 151 DIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
              P     N+L+  L   G   +A  +   M  R  + S   F + I  FC+  +L   
Sbjct: 339 ---PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLA 395

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             +   +  R    +       ++I G C+  R+++A ++L+ +    C PD + Y  + 
Sbjct: 396 YELFQLMTDR--GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                   V E   V +  R  G           I GL   RR+ +A++L   +      
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 329 IDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            D      LI      D    ++ FF+ M++KG VPT+ T S +   LCK  +  +   +
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            K +       D   Y  ++  LC S    EAY + + MK+ G  P V  YN L++  C+
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L  A  L + M + GC  +  TYN +   F +  E + A RLF  M  +G +P    
Sbjct: 634 VSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFM 693

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSV 532
           Y+ LL  L  E  +  A E++ +++
Sbjct: 694 YSLLLTKLVAEEKMDQAMEIWEEAL 718



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T N L+S F    + + A  LF N      +PD+ TY++L+ G C+  + Q A+ + ++ 
Sbjct: 134 TCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-SHVILLKSLADAREVE 590
               ++   ++ +T +  LC  G    A    R +  +   S  ++ IL+ +L  +  + 
Sbjct: 194 EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARIS 253

Query: 591 MA 592
            A
Sbjct: 254 DA 255


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 230/469 (49%), Gaps = 5/469 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ ++  L   +++    S+L ++    +  D+  Y  +I  L++G+N   A  + +E+
Sbjct: 282 SYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEM 341

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +   I P + +  + V++ +G ++ A  +FD M   GV      +   I  F     +
Sbjct: 342 VSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNV 401

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L E++KR N +I+        + G C    ++ A+ ++ E+    C+P+ + Y 
Sbjct: 402 RKGYELLVEIKKR-NIVISPYTYGT-AVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYT 459

Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            + + F L  S F   V VLK+ R+ G+AP T  Y   I+GL   +++ EA+     +V 
Sbjct: 460 TLIKTF-LQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
             F  D     A I G + + +  SA  +   M+E G +P     + L    CK+ K  E
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIE 578

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
               ++ +       D ++Y V+++ L  +G++ +A  +  EM+ KG+ PDV  Y +L++
Sbjct: 579 ACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLID 638

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   ++ A  ++D+M  +G + N+  YN+L+  F   GEIE A  L   M  KG  P
Sbjct: 639 GFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPP 698

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +A TY ++++G C+  +L  AF++F++     ++    + +T +   CR
Sbjct: 699 NAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCR 747



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 201/491 (40%), Gaps = 50/491 (10%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F+  P+ Y   +  +S    +    ++   +    +T  +  Y  +I    + KN +K +
Sbjct: 346 FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGY 405

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +  E+K     I P    + +  + S G +D A  +  EM   G   + + +   I  F
Sbjct: 406 ELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTF 465

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            + ++ G  + +L E+  RE  +   +     +I G  K K+++EA   L E+     KP
Sbjct: 466 LQKSRFGDAVRVLKEM--REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKP 523

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y      +   G     +  +K+  + GV P     +    GLI E   C+    G
Sbjct: 524 DAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPN----KVLCTGLINE--YCKK---G 574

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +VI                          A   F  M+E+G +    T + L   L K  
Sbjct: 575 KVI-------------------------EACSAFRSMVEQGILGDAKTYTVLMNGLVKNG 609

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++  E++  +       D+ SY  ++      G +++A  +  EM + GL  +V  YN
Sbjct: 610 KVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYN 669

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L+   CR   +  AK+L D+M   G   N  TY  +I  + + G++  A +LF  M  K
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK 729

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEV--------------FNKSVNHDVMLARSILST 545
           G+ PD+  YT+L++G C+  +++ A  +              FN  +N      ++ L+T
Sbjct: 730 GLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTT 789

Query: 546 FMISLCRRGHF 556
            MI+    G F
Sbjct: 790 DMINRLMDGSF 800



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 183/414 (44%), Gaps = 42/414 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALK 175
           D+  Y  ++  L++      A  +F+E++   + I P++ +  +L+   +  G +  A  
Sbjct: 594 DAKTYTVLMNGLVKNGKVNDAEEIFHEMR--GKGIAPDVFSYGTLIDGFSKLGNMQKASS 651

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM   G+  + I + + +  FC + ++ +   +LDE+  +       +V    II G
Sbjct: 652 IFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGK--GFPPNAVTYCTIIDG 709

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +CK   + EAF++ DE++++   PD   Y  + +    +  V ER + + +  + G A  
Sbjct: 710 YCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV-ERAITIFETNEKGCASS 768

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
           +  +   I                 V   GK  +  D++N L+        +   V +N 
Sbjct: 769 SAPFNALI---------------NWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNI 813

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI+                LCK    +   E++  +   +    + +Y  +++     GR
Sbjct: 814 MIDY---------------LCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGR 858

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-----SGCSGNL 470
             E + V  E+   G++PD   Y+ ++ A  +E +   A  L DQMFA      GC  ++
Sbjct: 859 RSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSI 918

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            T   L+S F++VGE+E A ++  NM+     PD++T   L+   C  +N + A
Sbjct: 919 STCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMA 972



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 132/625 (21%), Positives = 236/625 (37%), Gaps = 102/625 (16%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSL 94
           +L   ++   + P    + SL  GFF   +           ++ N   SP +Y + +K +
Sbjct: 371 ALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGM 430

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
             S  ++   +++K++  +    +  +Y  +I + +Q      A  V  E++   + I P
Sbjct: 431 CSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMRE--QGIAP 488

Query: 155 E-IC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           +  C NSL+  L+    +D A     EM   G +     +G FI  + E  +       +
Sbjct: 489 DTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYV 548

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
            E+   E  +I   V+   +I+ +CK  +V EA      +  +    D   Y ++     
Sbjct: 549 KEML--ECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLV 606

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V + E +  + R  G+AP    Y   I G           +LG +           
Sbjct: 607 KNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGF---------SKLGNM----------- 646

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                         + A   F+ M++ G    +   + L    C+  + ++  E+   +S
Sbjct: 647 --------------QKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMS 692

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
              +  +  +Y  ++   C SG L EA+ +  EMK KGL PD   Y +L++ CCR + + 
Sbjct: 693 GKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 752

Query: 453 PA--------------------------------------KKLWDQMFASGCSGNLKTYN 474
            A                                       +L D  F      N  TYN
Sbjct: 753 RAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYN 812

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I+I    + G +E A  LFH+M +  + P   TYTSLL G  +       F VF++ +  
Sbjct: 813 IMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAA 872

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI-------LLKSLADAR 587
            +     + S  + +  + G    A  LL  + +     D   +       LL   A   
Sbjct: 873 GIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 932

Query: 588 EVEMA------IEHIKWIQESSPTM 606
           E+E+A      +  +K+I +SS  +
Sbjct: 933 EMEVAEKVVENMVRLKYIPDSSTVI 957



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 112/522 (21%), Positives = 202/522 (38%), Gaps = 64/522 (12%)

Query: 95  SLSRQINAIDSVLKQVKVN------------KITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           SL+R  + +D++LK+ +++             +  D   Y  +I +  +  N Q A  V 
Sbjct: 188 SLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVL 247

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            + +   E++G    N           +D AL++   MS +G+  S   + + I   C+ 
Sbjct: 248 LKTE---EELGTATLN-----------VDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQ 293

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +L    S+L E+      +   +V   ++I G  KG+  + A  ++ E+       D +
Sbjct: 294 KRLEDAKSLLVEMNSV--GLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPM 351

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y          G++ + + +       GV P    Y   I G   E+ + +  EL   I
Sbjct: 352 MYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEI 411

Query: 323 VSGKFTIDDDVLN-ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                 I       A+ G  SS D   A      M   G  P +   + L K   ++++ 
Sbjct: 412 KKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRF 471

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS- 440
            + V V K +       D   YN ++  L  + ++ EA   + EM   G  PD   Y + 
Sbjct: 472 GDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAF 531

Query: 441 ----------------------------------LMEACCREDLLRPAKKLWDQMFASGC 466
                                             L+   C++  +  A   +  M   G 
Sbjct: 532 ISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGI 591

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
            G+ KTY +L++   + G++  A  +FH M  KG+APD  +Y +L++G  +  N+Q A  
Sbjct: 592 LGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASS 651

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +F++ V   +     I +  +   CR G    A +LL  +S 
Sbjct: 652 IFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSG 693



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 108/263 (41%), Gaps = 56/263 (21%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR---- 417
           VP+L+  ++L   L KRN+ D   +VYK +   +   D++SY +++   C  G ++    
Sbjct: 186 VPSLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKD 245

Query: 418 -----------------EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
                            EA  + + M  KGL P    YN L++  C++  L  AK L  +
Sbjct: 246 VLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVE 305

Query: 461 MFASGCSGNLKTYNILISKF-----------------------------------SEVGE 485
           M + G   +   Y+ILI                                      S+ G 
Sbjct: 306 MNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGA 365

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +E A  LF  M+  GV P A  Y SL+EG  +E N++  +E+  +    +++++     T
Sbjct: 366 MEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGT 425

Query: 546 FMISLCRRGHFLVATKLLRGLSS 568
            +  +C  G    A  +++ + +
Sbjct: 426 AVKGMCSSGDLDGAYNIVKEMGA 448


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 219/445 (49%), Gaps = 3/445 (0%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I   ++  + ++AF + +E+     +    I N+LL  +   G ++ AL++  EM
Sbjct: 322 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 381

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +GVE  +  + + I   C    + +   +LDE++KR+  +    +   +II+G C+  
Sbjct: 382 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK--LAPTVLTYSVIINGLCRCG 439

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            ++    +L E+ +   KP+ + Y  +       G V E  ++L++ R+ G+ P    Y 
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I+G    +R+ EA+     ++  +   +     A I G   + +   A  +FN M+  
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P +   + L +  CK     E   V++ + +     D+++Y+V++  L  +G++ EA
Sbjct: 560 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 619

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           +G+  E++ KGL P+   YNSL+   C++  +  A +L ++M   G + ++ TYNILI  
Sbjct: 620 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 679

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + GEIE A  LF ++  +G+ P+  TY ++++G C+  N  AAF++  + +   V   
Sbjct: 680 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 739

Query: 540 RSILSTFMISLCRRGHFLVATKLLR 564
             I +  +   C+   F  A  L +
Sbjct: 740 AFIYNVILNFCCKEEKFEKALDLFQ 764



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/532 (21%), Positives = 235/532 (44%), Gaps = 24/532 (4%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           Y +++ + +   ++     +L++++   I  D   Y  +I    + K  ++A +   E+ 
Sbjct: 463 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 522

Query: 146 ----KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
               + N    G     + +   +  G ++ A + F+EM   GV  +   +   I   C+
Sbjct: 523 ERRLRPNAHTYG-----AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              + +  S+   +  R   ++       ++IHG  +  ++ EAF +  EL+ +   P+ 
Sbjct: 578 EGNVTEAFSVFRFILSRR--VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNA 635

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +       G+V +   +L++    G+ P    Y   I GL     I  AK L + 
Sbjct: 636 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 695

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC-KRN 379
           I     T +     A++ G   S +P +A      M+ +G VP  + + N+  N C K  
Sbjct: 696 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-VPPDAFIYNVILNFCCKEE 754

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +++++ +     F    S+N ++   C SG+L+EA  +++EM  K   P+   Y 
Sbjct: 755 KFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYT 813

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SL++  C+  ++  AK+LW +M         KTY  L+  +  +G +     LF  M+ K
Sbjct: 814 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 873

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G+ PD  TY  +++  C+E N+  A ++ ++ +   + ++ +     + +LC++  F   
Sbjct: 874 GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEV 933

Query: 560 TKLLRGLSSD---LGHSDSHVI-----LLKSLADAREVEMAIEHIKWIQESS 603
            KLL  +      LG     VI     +  ++ +A EV  ++    W+  ++
Sbjct: 934 LKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTT 985



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 179/434 (41%), Gaps = 38/434 (8%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CNSLL  L     ++   K+FD M    V      +   I   C+   +     +L E+ 
Sbjct: 183 CNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMG 242

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           ++  S     V   +II G C+ + ++EA ++   +  +   PD   Y I+   F +   
Sbjct: 243 EKGCS--PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKR 300

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E +++L +   +G+ P    Y   I G + +  I +A  + + +V+     +  + N 
Sbjct: 301 SREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNT 360

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+  V        A+     M+EKG  P   T S L +  C+        E+   +    
Sbjct: 361 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 420

Query: 396 YFTDMESYNVMVSFLC-----------------------------------TSGRLREAY 420
               + +Y+V+++ LC                                     GR+ E+ 
Sbjct: 421 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 480

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++ M+ +G+ PDV  YNSL+   C+   +  A+    +M       N  TY   I  +
Sbjct: 481 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 540

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           S+ GE+E A R F+ ML  GV P+   YT+L+EG C+E N+  AF VF   ++  V+   
Sbjct: 541 SKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDV 600

Query: 541 SILSTFMISLCRRG 554
              S  +  L R G
Sbjct: 601 QTYSVLIHGLSRNG 614



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 2/246 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M EKG  P L T + +   LC+    DE +E+ + +       D+ +Y+++++  C   R
Sbjct: 241 MGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKR 300

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
            REA  ++ EM   GL P+   YN+L++   R+  +  A ++ D+M A G   NL  +N 
Sbjct: 301 SREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNT 360

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++   + G++E AL +   M+EKGV PD+ TY+ L+EG C+  N+  AFE+ ++     
Sbjct: 361 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 420

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595
           +       S  +  LCR G+      +LR +   +     + ++  +L  A   E  +E 
Sbjct: 421 LAPTVLTYSVIINGLCRCGNLQGTNAILREMV--MNGLKPNAVVYTTLMTAHAKEGRVEE 478

Query: 596 IKWIQE 601
            + I E
Sbjct: 479 SRMILE 484



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 184/411 (44%), Gaps = 4/411 (0%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           SV + +   ++  D   Y  +I  L +     +AF +F+E++           NSL++  
Sbjct: 586 SVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGS 645

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
              G +D A ++ +EM  +G+    + + + I   C+  ++ +  ++ D++  R   +  
Sbjct: 646 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR--GLTP 703

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    ++ G+CK K    AF++L+E+ +R   PD   Y ++   F      FE+ + L
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN-FCCKEEKFEKALDL 762

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSS 343
            ++        T  +   I G     ++ EA  L E ++  +F  +     +LI  +  +
Sbjct: 763 FQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 822

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A   +  M E+  +PT  T ++L           E+  +++ + A     D  +Y
Sbjct: 823 GMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTY 882

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            VM+   C  G + EA  +  E+  KG+   V+ Y++L++A C+++      KL +++  
Sbjct: 883 YVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGE 942

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           SG    L T +++   F   G ++ A  +  +M++ G   + T+   L++G
Sbjct: 943 SGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+L + ++L  +L K NK +   +V+  + A+    D+ +Y  M+S  C  G +++A  V
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM  KG  P++  YN ++   CR  LL  A +L   M   G   +L TY+ILI+ F  
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM 297

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
                 A  +   M++ G+ P+  TY +L++G  ++ +++ AF + ++ V   +     I
Sbjct: 298 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 357

Query: 543 LSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
            +T +  +C+ G    A +++     +G+  D   S ++ +L++     + +  A E + 
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD---SQTYSLLIEGHCRGQNMARAFELLD 414

Query: 598 WIQES--SPTML 607
            +++   +PT+L
Sbjct: 415 EMKKRKLAPTVL 426



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 46/233 (19%)

Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT----LSTLSNLSKNLCKRN----- 379
           ++ D++ ++I      DP+  + FF +   K    T    L  LS L+ NLC  N     
Sbjct: 52  LNTDIIRSVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPA 111

Query: 380 ---------KSDE-------LVEVYKVL--SANDYFTDM--ESYNVMVSFLCTSGRLREA 419
                     SD        +V+ Y+    S N    DM  +SY  M       G L EA
Sbjct: 112 SDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKM-------GFLVEA 164

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK-----KLWDQMFASGCSGNLKTYN 474
             V    K     P +   NSL+      DLL+  K     K++D M A     ++ TY 
Sbjct: 165 VNVFLGPKNFEFRPSLLSCNSLLG-----DLLKGNKVELFWKVFDGMCAHKVLPDVYTYT 219

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +IS   +VG ++ A R+   M EKG +P+  TY  ++ GLC+   L  A E+
Sbjct: 220 NMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 73/405 (18%), Positives = 153/405 (37%), Gaps = 64/405 (15%)

Query: 15  QAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWA 74
            ++IS S +     K + LLE+              +  + INP ++T++ L  G     
Sbjct: 639 NSLISGSCKQGNVDKASQLLEE--------------MCIKGINPDIVTYNILIDGLCKAG 684

Query: 75  S-----------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
                       +    T + ++Y +++     S+   A   +L+++ +  +  D+ +Y 
Sbjct: 685 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 744

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            I+    + +  +KA                                     +F EM  +
Sbjct: 745 VILNFCCKEEKFEKALD-----------------------------------LFQEMLEK 769

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G   ST+ F   I  +C++ KL +   +L+E+ +++   I   V    +I   CK   + 
Sbjct: 770 GFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ--FIPNHVTYTSLIDHNCKAGMMG 826

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA ++  E++ R   P    Y  +   +  +G++ E   + ++    G+ P    Y   I
Sbjct: 827 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRV 362
                E  + EA +L + I+     +     +ALI ++   +    ++   N + E G  
Sbjct: 887 DAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
             L T S +++        DE  EV + +    + ++  S   +V
Sbjct: 947 LGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLV 991


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 219/445 (49%), Gaps = 3/445 (0%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I   ++  + ++AF + +E+     +    I N+LL  +   G ++ AL++  EM
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +GVE  +  + + I   C    + +   +LDE++KR+  +    +   +II+G C+  
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK--LAPTVLTYSVIINGLCRCG 430

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            ++    +L E+ +   KP+ + Y  +       G V E  ++L++ R+ G+ P    Y 
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 490

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I+G    +R+ EA+     ++  +   +     A I G   + +   A  +FN M+  
Sbjct: 491 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 550

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P +   + L +  CK     E   V++ + +     D+++Y+V++  L  +G++ EA
Sbjct: 551 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           +G+  E++ KGL P+   YNSL+   C++  +  A +L ++M   G + ++ TYNILI  
Sbjct: 611 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 670

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + GEIE A  LF ++  +G+ P+  TY ++++G C+  N  AAF++  + +   V   
Sbjct: 671 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 730

Query: 540 RSILSTFMISLCRRGHFLVATKLLR 564
             I +  +   C+   F  A  L +
Sbjct: 731 AFIYNVILNFCCKEEKFEKALDLFQ 755



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/521 (20%), Positives = 228/521 (43%), Gaps = 19/521 (3%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNF-----------THSPLSYHSILKSLSLSRQINAID 104
           + P  +T+++L  GF      +  F             + + ++++L  +  + ++    
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 366

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV- 163
            +++++    +  DS  Y  +I    +G+N  +AF + +E+K     + P +    + + 
Sbjct: 367 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK--RKLAPTVLTYSVIIN 424

Query: 164 -LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G +     +  EM   G++ + + +   +    +  ++ +   +L+  R RE  +
Sbjct: 425 GLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE--RMREQGI 482

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +        +I GFCK KR+EEA   L E+  R  +P+   Y    + +   G +   + 
Sbjct: 483 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 542

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
              +    GV P    Y   I G   E  + EA  +   I+S +   D    + LI  +S
Sbjct: 543 YFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLS 602

Query: 343 -SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +     A   F+ + EKG +P   T ++L    CK+   D+  ++ + +       D+ 
Sbjct: 603 RNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIV 662

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN+++  LC +G +  A  +  +++ +GL P+   Y ++++  C+      A +L ++M
Sbjct: 663 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 722

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   +   YN++++   +  + E AL LF  MLEKG A    ++ +L+EG C+   L
Sbjct: 723 LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKL 781

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           Q A  +  + +    +      ++ +   C+ G    A +L
Sbjct: 782 QEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRL 822



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 198/445 (44%), Gaps = 16/445 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           Y +++ + +   ++     +L++++   I  D   Y  +I    + K  ++A +   E+ 
Sbjct: 454 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 513

Query: 146 ----KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
               + N    G     + +   +  G ++ A + F+EM   GV  +   +   I   C+
Sbjct: 514 ERRLRPNAHTYG-----AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              + +  S+   +  R   ++       ++IHG  +  ++ EAF +  EL+ +   P+ 
Sbjct: 569 EGNVTEAFSVFRFILSRR--VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNA 626

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +       G+V +   +L++    G+ P    Y   I GL     I  AK L + 
Sbjct: 627 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 686

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC-KRN 379
           I     T +     A++ G   S +P +A      M+ +G VP  + + N+  N C K  
Sbjct: 687 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-VPPDAFIYNVILNFCCKEE 745

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +++++ +     F    S+N ++   C SG+L+EA  +++EM  K   P+   Y 
Sbjct: 746 KFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYT 804

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SL++  C+  ++  AK+LW +M         KTY  L+  +  +G +     LF  M+ K
Sbjct: 805 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 864

Query: 500 GVAPDATTYTSLLEGLCQETNLQAA 524
           G+ PD  TY  +++  C+E N+  A
Sbjct: 865 GIEPDKMTYYVMIDAYCREGNVMEA 889



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 2/220 (0%)

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DE +E+ + +       D+ +Y+++++  C   R REA  ++ EM   GL P+   YN+L
Sbjct: 258 DEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNAL 317

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++   R+  +  A ++ D+M A G   NL  +N L++   + G++E AL +   M+EKGV
Sbjct: 318 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 377

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            PD+ TY+ L+EG C+  N+  AFE+ ++     +       S  +  LCR G+      
Sbjct: 378 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 437

Query: 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +LR +   +     + ++  +L  A   E  +E  + I E
Sbjct: 438 ILREMV--MNGLKPNAVVYTTLMTAHAKEGRVEESRMILE 475



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 175/434 (40%), Gaps = 56/434 (12%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CNSLL  L     ++   K+FD M    V      +   I   C   K+G V     +  
Sbjct: 192 CNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHC---KVGNV-----KDA 243

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           KR           VL+  G  K + ++EA ++   +  +   PD   Y I+   F +   
Sbjct: 244 KR-----------VLLEMGE-KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKR 291

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E +++L +   +G+ P    Y   I G + +  I +A  + + +V+     +  + N 
Sbjct: 292 SREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNT 351

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+  V        A+     M+EKG  P   T S L +  C+        E+   +    
Sbjct: 352 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 411

Query: 396 YFTDMESYNVMVSFLC-----------------------------------TSGRLREAY 420
               + +Y+V+++ LC                                     GR+ E+ 
Sbjct: 412 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 471

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++ M+ +G+ PDV  YNSL+   C+   +  A+    +M       N  TY   I  +
Sbjct: 472 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 531

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           S+ GE+E A R F+ ML  GV P+   YT+L+EG C+E N+  AF VF   ++  V+   
Sbjct: 532 SKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDV 591

Query: 541 SILSTFMISLCRRG 554
              S  +  L R G
Sbjct: 592 QTYSVLIHGLSRNG 605



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 172/416 (41%), Gaps = 43/416 (10%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           SV + +   ++  D   Y  +I  L +     +AF +F+E++           NSL++  
Sbjct: 577 SVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGS 636

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
              G +D A ++ +EM  +G+    + + + I   C+  ++ +  ++ D++  R   +  
Sbjct: 637 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR--GLTP 694

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    ++ G+CK K    AF++L+E+ +R   PD   Y ++   F      FE+ + L
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN-FCCKEEKFEKALDL 753

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            ++        T  +   I G     ++ EA  L E                        
Sbjct: 754 FQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEE----------------------- 790

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                      MIEK  +P   T ++L  + CK     E   ++  +   +     ++Y 
Sbjct: 791 -----------MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYT 839

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++      G + E   + +EM  KG++PD   Y  +++A CRE  +  A KL D++   
Sbjct: 840 SLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVK 899

Query: 465 GC---SG---NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           G    SG    L T +++   F   G ++ A  +  +M++ G   + T+   L++G
Sbjct: 900 GMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 955



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 118/252 (46%), Gaps = 28/252 (11%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+L + ++L  +L K NK +   +V+  + A+    D+ +Y  M+S  C  G +++A  V
Sbjct: 187 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 246

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM  K                    LL  A +L   M   G   +L TY+ILI+ F  
Sbjct: 247 LLEMGEKA------------------RLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM 288

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
                 A  +   M++ G+ P+  TY +L++G  ++ +++ AF + ++ V   +     I
Sbjct: 289 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 348

Query: 543 LSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
            +T +  +C+ G    A +++     +G+  D   S ++ +L++     + +  A E + 
Sbjct: 349 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD---SQTYSLLIEGHCRGQNMARAFELLD 405

Query: 598 WIQES--SPTML 607
            +++   +PT+L
Sbjct: 406 EMKKRKLAPTVL 417



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 67/274 (24%)

Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT----LSTLSNLSKNLCKRN----- 379
           ++ D++ ++I      DP+  + FF +   K    T    L  LS L+ NLC  N     
Sbjct: 61  LNTDIIRSVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPA 120

Query: 380 ---------KSDE-------LVEVYKVL--SANDYFTDM--ESYNVMVSFLCTSGRLREA 419
                     SD        +V+ Y+    S N    DM  +SY  M       G L EA
Sbjct: 121 SDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKM-------GFLVEA 173

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK-----KLWDQMFASGCSGNLKTYN 474
             V    K     P +   NSL+      DLL+  K     K++D M A     ++ TY 
Sbjct: 174 VNVFLGPKNFEFRPSLLSCNSLLG-----DLLKGNKVELFWKVFDGMCAHKVLPDVYTYT 228

Query: 475 ILISKFSEVGEIEGALRLF-----------------HNMLEKGVAPDATTYTSLLEGLCQ 517
            +IS   +VG ++ A R+                   +M++KG+ PD  TY  L+ G C 
Sbjct: 229 NMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM 288

Query: 518 ETNLQAA----FEVFNKSVNHDVMLARSILSTFM 547
           E   + A     E+ +  +  + +   +++  FM
Sbjct: 289 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFM 322



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 60/323 (18%), Positives = 123/323 (38%), Gaps = 64/323 (19%)

Query: 15  QAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWA 74
            ++IS S +     K + LLE+              +  + INP ++T++ L  G     
Sbjct: 630 NSLISGSCKQGNVDKASQLLEE--------------MCIKGINPDIVTYNILIDGLCKAG 675

Query: 75  S-----------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
                       +    T + ++Y +++     S+   A   +L+++ +  +  D+ +Y 
Sbjct: 676 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 735

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            I+    + +  +KA                                     +F EM  +
Sbjct: 736 VILNFCCKEEKFEKALD-----------------------------------LFQEMLEK 760

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G   ST+ F   I  +C++ KL +   +L+E+ +++   I   V    +I   CK   + 
Sbjct: 761 GFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ--FIPNHVTYTSLIDHNCKAGMMG 817

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA ++  E++ R   P    Y  +   +  +G++ E   + ++    G+ P    Y   I
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877

Query: 304 LGLIVERRICEAKEL-GEVIVSG 325
                E  + EA +L  E++V G
Sbjct: 878 DAYCREGNVMEACKLKDEILVKG 900


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 246/532 (46%), Gaps = 24/532 (4%)

Query: 10  ATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALG 69
            T+ S   +S SN  R    +    +  L Q   R  LS  LV  V+N  L+ H    + 
Sbjct: 65  TTQTSNDALSISNAIRTG--FGAETQNFLRQF--RGRLSEPLVVEVMN--LVKHPEFCVE 118

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           FF WAS+Q  ++H+P+ Y+++++ L  +   N  D V  +  +     D  + R ++  L
Sbjct: 119 FFLWASRQIGYSHTPVVYNALIELLCCNAVNN--DRVSHKFLMQIRDDDRELLRKLLNFL 176

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIG----PEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           IQ       ++V  E     +D G    P   N+L+ V      +D A  +  EMS+ G 
Sbjct: 177 IQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGF 236

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
                  G F +  C+  + G  LS+L++        +  +V    ++ G C+    +EA
Sbjct: 237 RMDGCTLGCFAYSLCKAGRCGDALSLLEK-----EEFVPDTVFYNRMVSGLCEASLFQEA 291

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             +LD +R   C P+ + YRI+       G +   + +L      G  P    +   +  
Sbjct: 292 MDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHA 351

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIV-----FFNFMIE 358
               R    A +L + ++         + N  IGS+ S +  P S ++      ++ M++
Sbjct: 352 YCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLD 411

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G V     +SN ++ LC   K D+  E+   + +  +  D  +Y+ ++ FLC + ++ +
Sbjct: 412 LGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEK 471

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ + +EMK+ G+ P V  Y  L+++ C+  L++ A+  +D+M    C+ N+ TY  LI 
Sbjct: 472 AFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIH 531

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            + +  ++  A +LF  ML +G  P+  TYT+L++G C+   +  A +++ +
Sbjct: 532 AYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYAR 583



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 20/365 (5%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  D A ++  EM  +G       +   I   C+ +K+ +   + +E++K  N ++
Sbjct: 428 LCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKK--NGIV 485

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
                  ++I  FCK   +++A    DE+    C P+ + Y  +   +     VF+   +
Sbjct: 486 PSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKL 545

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
            +     G  P    Y   I G       C+A ++ +            +   + G + S
Sbjct: 546 FEMMLLEGSKPNVVTYTALIDGH------CKAGQIDKAC---------QIYARMQGDIES 590

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D     ++F         P + T   L   LCK N+ +E  E+   +S N    +   Y
Sbjct: 591 SDID---MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVY 647

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++   C +G+L  A  V  +M  +G  P++  Y+SL+ +  +E  L    K+  +M  
Sbjct: 648 DALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLE 707

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           + C+ N+  Y  +I    +VG+ E A RL   M E G  P+  TYT++++G  +   ++ 
Sbjct: 708 NSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQ 767

Query: 524 AFEVF 528
             E++
Sbjct: 768 CLELY 772



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 115/536 (21%), Positives = 228/536 (42%), Gaps = 28/536 (5%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     +Y  ++  L  + ++     + +++K N I      Y  +I S  +    Q+A 
Sbjct: 449 FVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQAR 508

Query: 140 SVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           + F+E ++ NC    P +    SL+        + +A K+F+ M   G + + + +   I
Sbjct: 509 NWFDEMLRDNCT---PNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALI 565

Query: 197 WKFCENAKLGQVLSMLDEVRKR-------------ENSMINGSVIAV-LIIHGFCKGKRV 242
              C+  ++ +   +   ++               +N     ++I    ++ G CK  RV
Sbjct: 566 DGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRV 625

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           EEA ++LD + +  C+P+ I Y  + + F   G +   + V  K  + G  P    Y   
Sbjct: 626 EEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSL 685

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGR 361
           I  L  E+R+    ++   ++    T +  +   +I  +  +     A      M E G 
Sbjct: 686 INSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGC 745

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + +     K  K ++ +E+Y+ + +     +  +Y V+++  C++G L EA+ 
Sbjct: 746 YPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHR 805

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ EMK+      +S Y  ++E   RE +   +  L D++  +        Y ILI  F 
Sbjct: 806 LLDEMKQTYWPRHISSYRKIIEGFNREFI--TSIGLLDELSENESVPVESLYRILIDNFI 863

Query: 482 EVGEIEGALRLFHNMLEKG--VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           + G +EGAL L   +         +   YTSL+E L   + +  AFE++   +N +V+  
Sbjct: 864 KAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPE 923

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595
            S     +  L R G +  A +L   +   + H  S+ +  K+    R + + I+H
Sbjct: 924 LSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHVCSNFVNYKT---TRALPLCIKH 976



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 17/237 (7%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           TL   + +LCK  +  + + +   L   ++  D   YN MVS LC +   +EA  ++  M
Sbjct: 242 TLGCFAYSLCKAGRCGDALSL---LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRM 298

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +     P+V  Y  L+  C  +  L   K++   M   GC  N + +N L+  + +  + 
Sbjct: 299 RSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDY 358

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR 540
             A +LF  M++ G  P    Y   +  +C    L      + A + +++ ++  V+L +
Sbjct: 359 SYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNK 418

Query: 541 SILSTFMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
             +S F   LC  G F     ++   + +G   D     ++  ++  L DA +VE A
Sbjct: 419 VNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPD---DSTYSKVIGFLCDASKVEKA 472



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G   + +T + L +   + +K D    V++ +S + +  D  +       LC +GR  +A
Sbjct: 200 GYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDA 259

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +++   ++   PD  FYN ++   C   L + A  + D+M +  C  N+ TY IL+S 
Sbjct: 260 LSLLE---KEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSG 316

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G++    R+   M+ +G  P+   + SL+   C+  +   A+++F K +       
Sbjct: 317 CLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPG 376

Query: 540 RSILSTFMISLC 551
             + + F+ S+C
Sbjct: 377 YLLYNIFIGSIC 388



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 6/196 (3%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           VP     + +   LC+ +   E +++   + +     ++ +Y +++S     G+L     
Sbjct: 269 VPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKR 328

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++  M  +G  P+   +NSL+ A C+      A KL+ +M   GC      YNI I    
Sbjct: 329 ILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSIC 388

Query: 482 EVGEIEG------ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
              E+ G      A + +  ML+ GV  +    ++    LC       AFE+  + ++  
Sbjct: 389 SNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKG 448

Query: 536 VMLARSILSTFMISLC 551
            +   S  S  +  LC
Sbjct: 449 FVPDDSTYSKVIGFLC 464


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 160/625 (25%), Positives = 271/625 (43%), Gaps = 57/625 (9%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S ++  F WA  Q  + H+   YH ++  L  +++   ID +L Q+K   I    S++  
Sbjct: 83  STSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFIC 142

Query: 125 IIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           I+    +     +A  +  ++K  + CE       N +L +L S      A  +F EM  
Sbjct: 143 IMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSY-NVVLDILVSANCPSVAANVFYEMLS 201

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVL-------- 231
           +GV  +   FGV +   C   ++    S+L ++ K     NS++  ++I  L        
Sbjct: 202 KGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNE 261

Query: 232 ----------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
                                 +I+G C+  R+ E  K++D +  R   P+ I Y ++  
Sbjct: 262 ALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMN 321

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKE-LGEVIVSGK 326
               +G V E +V+L K       P  ND    IL  G +   R+ EA   L + ++   
Sbjct: 322 GLCRVGKVDEAQVLLNK------VPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNG 375

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D    N LI G        SA+   N M   G  P L T + L    CK+N+ +E  
Sbjct: 376 CRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAG 435

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            V   +SA  +  ++  YNV++  LC +G++ +A  ++ EM  KG  PD+  +N+L+   
Sbjct: 436 YVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGL 495

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+ D    A  L+  M   G   N  TYN LI  F   G I+ AL+L ++ML +G   D 
Sbjct: 496 CKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDE 555

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-- 563
            TY  L++  C+    + A  +F++ V  D++ +    +  +  LCR G    A +LL  
Sbjct: 556 ITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRD 615

Query: 564 ---RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK--WIQESSPTMLQEISAELFASL 618
              RGL+ D+   +S +  L  + + RE       ++   IQ  + T    I     A +
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGM 675

Query: 619 SSSSYPEPILLLLHALQEKCLDSEI 643
              +Y    LLLL  ++   + +++
Sbjct: 676 FDDAY----LLLLRGVENAFIPNDV 696



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 149/344 (43%), Gaps = 3/344 (0%)

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           ++D+M   G       F   I   C+   +G  + M++++    N      +    ++ G
Sbjct: 367 LYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA--NGCTPNLITYTTLLDG 424

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           FCK  ++EEA  VL+E+  +  + + + Y ++       G V +   +L +    G  P 
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPD 484

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFN 354
              +   I GL    R  +A  L   ++      +    N LI + +     + A+   N
Sbjct: 485 IFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G      T + L K  CK   +++ + ++  +   D      S N++++ LC  G
Sbjct: 545 DMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVG 604

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++  A  ++++M  +GL PDV  YNSL+   C+   +R A  L++++ A G   +  TYN
Sbjct: 605 KVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYN 664

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            LI      G  + A  L    +E    P+  T+  L+    +E
Sbjct: 665 TLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 239/538 (44%), Gaps = 51/538 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ-----VKVNKITL---- 117
           AL FF+WAS+Q  F H+  +Y+ + ++L  +R+I+    +LK      +  N  T     
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 118 --------------------------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151
                                     D+++Y F+I +L + +NT KA   F  ++  CE 
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME--CEK 124

Query: 152 IGPEICNSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                 N +   +  DG      +  A   F +M  +G   +   + V I  FC+  K+ 
Sbjct: 125 ------NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVH 178

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L E++  E+ +    V    +IHGFC+  +V+ A+K+  ++    C P+ + Y  
Sbjct: 179 RAYLLLKEMK--ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT 236

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G + E   +L + R+ G+ P    Y   + GL    +I  A ++ E   +G 
Sbjct: 237 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD 296

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D    + LI  +        A   F  M E    P + T + L   LCK ++  E  
Sbjct: 297 CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 356

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +V + +   +   ++ +Y+ ++  LC +G++R+A  V + M  +G++P+V  YNSL+   
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C  + +  A  L ++M A+GC  ++ TYN LI    + G    A RLF +M  K   PD 
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 476

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            TY+ L+ G C+   +  A  +F+  +   V+      ST +   C  G    A +LL
Sbjct: 477 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 534



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/550 (23%), Positives = 255/550 (46%), Gaps = 26/550 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++       +++    +LK++K + +  +   Y  +I    +      A+ +F ++
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 222

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             N     P +   N+LL+ L  +G +D A ++ DEM  RG++     +   +   C+  
Sbjct: 223 VEN--GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 280

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           K+   L + ++     N      V+A   +I G CK  R++EA K+ +++R   C+PD +
Sbjct: 281 KIDMALKVFED---NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVV 337

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEV 321
            +  + +       + E + VL+        P    Y   I GL    ++ +A+E+   +
Sbjct: 338 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397

Query: 322 IVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           IV G   I+ +V+  N+LI G   +    SA++    M   G +P + T + L   LCK 
Sbjct: 398 IVRG---IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 454

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            ++ E   ++  + A     D+ +Y+ ++   C   R+  A  +  +M ++ + PDV  +
Sbjct: 455 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTF 514

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           ++L+E  C   L+  A++L ++M AS CS ++ TY  L+  F +VG +  A R+   M +
Sbjct: 515 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK 574

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +G  P+  TYT+L++  C+      A+    E+    V  +V+  RS++  F    C  G
Sbjct: 575 RGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGF----CGTG 630

Query: 555 HFLVATKLLRGLSSDLG-HSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
               A K+L  L  D    +D  ++ +++  L     +  A+E ++ I++S      +I 
Sbjct: 631 DLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 690

Query: 612 AELFASLSSS 621
             L   L   
Sbjct: 691 VALIRGLCQG 700



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/498 (22%), Positives = 212/498 (42%), Gaps = 45/498 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++       +++    + +Q+  N    +   Y  ++  L +     +A+ + +E
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 256

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++           ++L+A L   G ID ALK+F++ S+       + +   I   C+  +
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +   + +++R  ENS     V    ++ G CKG R++EA +VL+ +  R C P+ I Y
Sbjct: 317 LDEACKLFEKMR--ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITY 374

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +     G V + + V K+    G+ P    Y   I G  +   +  A  L E + +
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 434

Query: 325 GKFTIDDDVLNALIGSVSSID--PRSAIVF------------------------------ 352
                D    N LI  +      P +  +F                              
Sbjct: 435 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 494

Query: 353 ----FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
               F+ M+++  +P + T S L +  C     D+   + + + A+D   D+ +Y  +V 
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  GR+ EA  V++ M ++G  P+V  Y +L++A CR      A +L ++M  +G   
Sbjct: 555 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQP 614

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           N+ TY  LI  F   G++E A ++   +  ++    D   Y  +++GLC+   + AA E+
Sbjct: 615 NVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALEL 674

Query: 528 F------NKSVNHDVMLA 539
                       HD+ +A
Sbjct: 675 LEAIKQSGTPPRHDIYVA 692



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 169/407 (41%), Gaps = 39/407 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L   L     ID    +       G+  +   + V I   C++  L +   +L+E+R 
Sbjct: 28  NRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMR- 86

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E+  +  + I   +IH  CK +   +A   LD  R  EC+ + I + I+ +       +
Sbjct: 87  -ESGPVPDAAIYNFVIHALCKARNTAKA---LDYFRSMECEKNVITWTIMIDGLCKANRL 142

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E      K +K G  P    Y   I G     ++                         
Sbjct: 143 PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV------------------------- 177

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                      A +    M E G  P + T S +    C++ K D   ++++ +  N   
Sbjct: 178 ---------HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +YN ++S LC +G + EAY ++ EM+ +GL PD   Y++LM   C+   +  A K+
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           ++      C  ++  Y+ LI+   + G ++ A +LF  M E    PD  T+T+L++GLC+
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              LQ A +V     + +        S+ +  LC+ G    A ++ +
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 6/305 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +LK     G+ P    Y   I GL     + +A EL E +       D  + N +I ++ 
Sbjct: 46  ILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALC 105

Query: 343 SI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              +   A+ +F  M  +  V T + + +    LCK N+  E    +  +       +  
Sbjct: 106 KARNTAKALDYFRSMECEKNVITWTIMID---GLCKANRLPEATTYFAKMKKKGTVPNEW 162

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YNV+++  C   ++  AY +++EMK  GL P+V  Y++++   CR+  +  A KL+ QM
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 222

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +GC  NL TYN L+S     G ++ A  L   M E+G+ PD  +Y +L+ GLC+   +
Sbjct: 223 VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 282

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
             A +VF  + N D        ST +  LC+ G    A KL   +  +    D  V+   
Sbjct: 283 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPD--VVTFT 340

Query: 582 SLADA 586
           +L D 
Sbjct: 341 ALMDG 345



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 175/423 (41%), Gaps = 42/423 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++Y S++  L  + Q+     V K++ V  I  +   Y  +I           A
Sbjct: 366 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 425

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             +  E+        P+I   N+L+  L   G    A ++F +M  +      I +   I
Sbjct: 426 LLLMEEMTAT--GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 483

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             FC+  ++    ++ D++ K+  +++   V    ++ G+C    V++A ++L+E+   +
Sbjct: 484 GGFCKLERIDMARTLFDDMLKQ--AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 541

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD   Y  + + F  +G + E   VLK+  K G  P    Y   I         C A 
Sbjct: 542 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAF------CRA- 594

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
                   GK T+   +L  ++G+                   G  P + T  +L    C
Sbjct: 595 --------GKPTVAYRLLEEMVGN-------------------GVQPNVITYRSLIGGFC 627

Query: 377 KRNKSDELVEVYKVLSANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
                +E  ++ + L  ++    DM +Y VM+  LC +GR+  A  +++ +K+ G  P  
Sbjct: 628 GTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRH 687

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGALRLFH 494
             Y +L+   C+   L  A ++ ++M  S  S  N + Y  +I + +  G  E A  L  
Sbjct: 688 DIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALAD 747

Query: 495 NML 497
            +L
Sbjct: 748 ELL 750


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 142/577 (24%), Positives = 241/577 (41%), Gaps = 86/577 (14%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK------------- 114
           L   +WAS+QPNF  S + Y  +L+ L       ++  VL+++K                
Sbjct: 89  LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE 148

Query: 115 -----------------------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151
                                  + LD+  Y F++  L+ G N  K   + N  +     
Sbjct: 149 SYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDG-NKLKLVEIVNS-RMVSRG 206

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N L+  L     I  A+ M +EM   G+      F   +  F E   +   L
Sbjct: 207 IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGAL 266

Query: 210 SMLDEVRKRENSMING----SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                 R RE  +  G    +V   +++HG+CK  R+EE    +DE+     +PD   + 
Sbjct: 267 ------RIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFN 320

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +      +G V     +L    + G  P    Y   I GL          +LGEV    
Sbjct: 321 SLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLC---------KLGEV---- 367

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                  A+   N MI +   P   T + L   LCK N+ +E  
Sbjct: 368 ---------------------EEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEAT 406

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+ +VL++     D+ ++N ++  LC +   R A  + +EMK KG  PD   YN L+++ 
Sbjct: 407 ELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    L  A  L  +M +SGCS N+ TYN LI  F +   IE A  +F  M  +G++ + 
Sbjct: 467 CSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNV 526

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY +L++GLC+   ++ A ++ ++ +   +   +   ++ +   CR G    A  +++ 
Sbjct: 527 VTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQT 586

Query: 566 LSSDLGHSDS--HVILLKSLADAREVEMAIEHIKWIQ 600
           ++S+    DS  +  L+  L+ A  VE+A   ++ +Q
Sbjct: 587 MTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQ 623



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 206/506 (40%), Gaps = 79/506 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ +L  L    ++  ++ V  ++    I  D + +  +I +L +    + A  +  E
Sbjct: 177 FTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEE 236

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +         +   +L+     +G ++ AL++ ++M   G   S +   V +  +C+  +
Sbjct: 237 MGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGR 296

Query: 205 LGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + +VLS +DE+     R +     S     +++G C+   V+ A ++LD +      PD 
Sbjct: 297 IEEVLSFIDEMSNEGFRPDRFTFNS-----LVNGLCRIGHVKHALEILDVMLQEGFDPDI 351

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +      +G V E   +L +      +P T  Y   I  L  E ++ EA EL  V
Sbjct: 352 FTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARV 411

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + S     D    N+LI G   + + R A+  F  M  KG  P   T + L  +LC R +
Sbjct: 412 LTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGR 471

Query: 381 SDELVEVYK--------------------------VLSANDYFTDME---------SYNV 405
            +E + + K                          +  A + F +ME         +YN 
Sbjct: 472 LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++  LC + R+ EA  ++ +M  +GL PD   YNSL+   CR   ++ A  +   M ++G
Sbjct: 532 LIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 466 CSGNLKTYNILISKFSEVGEIE-----------------------------------GAL 490
           C  +  TY  LI   S+ G +E                                    A+
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAV 651

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLC 516
           RLF  M+EKG  PDA TY  +  GLC
Sbjct: 652 RLFREMMEKGDPPDAVTYKVVFRGLC 677


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 228/469 (48%), Gaps = 5/469 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++  L   +++    S+L ++    ++LD+  Y  +I  L++G+N   A  + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +  +I P + +  + V++ +G ++ A  +FD M   G+      +   I  +C    +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            Q   +L E++KR N +I+       ++ G C    ++ A+ ++ E+    C+P+ + Y 
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            + + F L  S F   + VLK+ ++ G+AP    Y   I+GL   +R+ EA+     +V 
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +     A I G + + +  SA  +   M E G +P     + L    CK+ K  E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
               Y+ +       D ++Y V+++ L  + ++ +A  + +EM+ KG+ PDV  Y  L+ 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   ++ A  ++D+M   G + N+  YN+L+  F   GEIE A  L   M  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +A TY ++++G C+  +L  AF +F++     ++    + +T +   CR
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 198/497 (39%), Gaps = 78/497 (15%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   SP +Y +++K +  S  ++   +++K++  +    +  +Y  +I + +Q    
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A  V  E+K   + I P+I C NSL+  L+    +D A     EM   G++ +   +G
Sbjct: 469 GDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            FI  + E ++       + E+R  E  ++   V+   +I+ +CK  +V EA      + 
Sbjct: 527 AFISGYIEASEFASADKYVKEMR--ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +    D   Y ++         V + E + ++ R  G+AP    Y   I G        
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF------- 637

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
              +LG +                         + A   F+ M+E+G  P +   + L  
Sbjct: 638 --SKLGNM-------------------------QKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C+  + ++  E+   +S      +  +Y  ++   C SG L EA+ +  EMK KGL P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 434 DVSFYNSLMEACCREDLLRPA--------------------------------------K 455
           D   Y +L++ CCR + +  A                                       
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L D  F      N  TYNI+I    + G +E A  LFH M    + P   TYTSLL G 
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 516 CQETNLQAAFEVFNKSV 532
            +       F VF++++
Sbjct: 851 DKMGRRAEMFPVFDEAI 867



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 42/410 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALK 175
           D+  Y  ++  L +      A  +F E++   + I P++ +   L+   +  G +  A  
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM   G+  + I + + +  FC + ++ +   +LDE+  +   +   +V    II G
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK--GLHPNAVTYCTIIDG 706

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +CK   + EAF++ DE++++   PD   Y  + +    +  V ER + +    K G A  
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV-ERAITIFGTNKKGCASS 765

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
           T  +   I                 V   GK  +  +VLN L+        +   V +N 
Sbjct: 766 TAPFNALI---------------NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI+                LCK    +   E++  +   +    + +Y  +++     GR
Sbjct: 811 MIDY---------------LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-----SGCSGNL 470
             E + V  E    G++PD   Y+ ++ A  +E +   A  L DQMFA      GC  ++
Sbjct: 856 RAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            T   L+S F++VGE+E A ++  NM+     PD+ T   L+   C  +N
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 133/608 (21%), Positives = 242/608 (39%), Gaps = 92/608 (15%)

Query: 36  QTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQP-------NFTHSPL--- 85
            TL    L   ++P +V  V+    +   S  L FFNW   Q        +F+   L   
Sbjct: 49  DTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLC 108

Query: 86  SYHSILKSLSLSRQI--------NAIDSVLK--QVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ S  K+LS+  ++            S+++  Q  V K + D  ++  +    I  +  
Sbjct: 109 NFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGK-SDDGVLFGILFDGYIAKEYI 167

Query: 136 QKAFSVFNEVKFNCEDIGPEI------CNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           ++A  VF+        +G E+      C  LL  L     +D    ++  M  R V F  
Sbjct: 168 EEAVFVFSS------SMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDV 221

Query: 190 IGFGVFIWKFCE--NAKLGQVLSM------------LDEVRKRENSMINGSVIAV----- 230
             + + I   C   N +LG+ +              +D   K + SMI   ++ +     
Sbjct: 222 KTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYD 281

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G CK KR+E+A  +L E+                                     L
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMD-----------------------------------SL 306

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSA 349
           GV+   + Y   I GL+  R    AK L   +VS    I   + +  I  +S       A
Sbjct: 307 GVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKA 366

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F+ MI  G +P     ++L +  C+     +  E+   +   +      +Y  +V  
Sbjct: 367 KALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           +C+SG L  AY +++EM   G  P+V  Y +L++   +      A ++  +M   G + +
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  YN LI   S+   ++ A      M+E G+ P+A TY + + G  + +   +A + + 
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA-DKYV 545

Query: 530 KSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADA 586
           K +    +L   +L T +I+  C++G  + A    R +     LG + ++ +L+  L   
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605

Query: 587 REVEMAIE 594
            +V+ A E
Sbjct: 606 DKVDDAEE 613



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 171/441 (38%), Gaps = 52/441 (11%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D ALK+ + M  +G+      + V I   C+  +L    S+L E+     S+ N +   
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY-- 315

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            L+I G  KG+  + A  ++ E+             I    +     V  +E V++K + 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSH-------GINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 290 L-------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           L       G+ P+   Y   I G   E+ + +  EL   +      I       ++ G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           SS D   A      MI  G  P +   + L K   + ++  + + V K +       D+ 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL-------------------M 442
            YN ++  L  + R+ EA   + EM   GL P+   Y +                    M
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 443 EAC----------------CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             C                C++  +  A   +  M   G  G+ KTY +L++   +  ++
Sbjct: 549 RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A  +F  M  KG+APD  +Y  L+ G  +  N+Q A  +F++ V   +     I +  
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 547 MISLCRRGHFLVATKLLRGLS 567
           +   CR G    A +LL  +S
Sbjct: 669 LGGFCRSGEIEKAKELLDEMS 689


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 228/469 (48%), Gaps = 5/469 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++  L   +++    S+L ++    ++LD+  Y  +I  L++G+N   A  + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +  +I P + +  + V++ +G ++ A  +FD M   G+      +   I  +C    +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            Q   +L E++KR N +I+       ++ G C    ++ A+ ++ E+    C+P+ + Y 
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            + + F L  S F   + VLK+ ++ G+AP    Y   I+GL   +R+ EA+     +V 
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +     A I G + + +  SA  +   M E G +P     + L    CK+ K  E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
               Y+ +       D ++Y V+++ L  + ++ +A  + +EM+ KG+ PDV  Y  L+ 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   ++ A  ++D+M   G + N+  YN+L+  F   GEIE A  L   M  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +A TY ++++G C+  +L  AF +F++     ++    + +T +   CR
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 198/497 (39%), Gaps = 78/497 (15%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   SP +Y +++K +  S  ++   +++K++  +    +  +Y  +I + +Q    
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A  V  E+K   + I P+I C NSL+  L+    +D A     EM   G++ +   +G
Sbjct: 469 GDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            FI  + E ++       + E+R  E  ++   V+   +I+ +CK  +V EA      + 
Sbjct: 527 AFISGYIEASEFASADKYVKEMR--ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +    D   Y ++         V + E + ++ R  G+AP    Y   I G        
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF------- 637

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
              +LG +                         + A   F+ M+E+G  P +   + L  
Sbjct: 638 --SKLGNM-------------------------QKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C+  + ++  E+   +S      +  +Y  ++   C SG L EA+ +  EMK KGL P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 434 DVSFYNSLMEACCREDLLRPA--------------------------------------K 455
           D   Y +L++ CCR + +  A                                       
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L D  F      N  TYNI+I    + G +E A  LFH M    + P   TYTSLL G 
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 516 CQETNLQAAFEVFNKSV 532
            +       F VF++++
Sbjct: 851 DKMGRRAEMFPVFDEAI 867



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 42/410 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALK 175
           D+  Y  ++  L +      A  +F E++   + I P++ +   L+   +  G +  A  
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM   G+  + I + + +  FC + ++ +   +LDE+  +   +   +V    II G
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK--GLHPNAVTYCTIIDG 706

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +CK   + EAF++ DE++++   PD   Y  + +    +  V ER + +    K G A  
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV-ERAITIFGTNKKGCASS 765

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
           T  +   I                 V   GK  +  +VLN L+        +   V +N 
Sbjct: 766 TAPFNALI---------------NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI+                LCK    +   E++  +   +    + +Y  +++     GR
Sbjct: 811 MIDY---------------LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-----SGCSGNL 470
             E + V  E    G++PD   Y+ ++ A  +E +   A  L DQMFA      GC  ++
Sbjct: 856 RAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            T   L+S F++VGE+E A ++  NM+     PD+ T   L+   C  +N
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 133/608 (21%), Positives = 241/608 (39%), Gaps = 92/608 (15%)

Query: 36  QTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQP-------NFTHSPL--- 85
            TL    L   ++P +V  V+    +   S  L FFNW   Q        +F+   L   
Sbjct: 49  DTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLC 108

Query: 86  SYHSILKSLSLSRQI--------NAIDSVLK--QVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ S  K+LS+  ++            S+++  Q  V K + D  ++  +    I     
Sbjct: 109 NFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGK-SDDGVLFGILFDGYIAKGYI 167

Query: 136 QKAFSVFNEVKFNCEDIGPEI------CNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           ++A  VF+        +G E+      C  LL  L     +D    ++  M  R V F  
Sbjct: 168 EEAVFVFSS------SMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDV 221

Query: 190 IGFGVFIWKFCE--NAKLGQVLSM------------LDEVRKRENSMINGSVIAV----- 230
             + + I   C   N +LG+ +              +D   K + SMI   ++ +     
Sbjct: 222 KTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYD 281

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G CK KR+E+A  +L E+                                     L
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMD-----------------------------------SL 306

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSA 349
           GV+   + Y   I GL+  R    AK L   +VS    I   + +  I  +S       A
Sbjct: 307 GVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKA 366

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F+ MI  G +P     ++L +  C+     +  E+   +   +      +Y  +V  
Sbjct: 367 KALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           +C+SG L  AY +++EM   G  P+V  Y +L++   +      A ++  +M   G + +
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  YN LI   S+   ++ A      M+E G+ P+A TY + + G  + +   +A + + 
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA-DKYV 545

Query: 530 KSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADA 586
           K +    +L   +L T +I+  C++G  + A    R +     LG + ++ +L+  L   
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605

Query: 587 REVEMAIE 594
            +V+ A E
Sbjct: 606 DKVDDAEE 613



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 171/441 (38%), Gaps = 52/441 (11%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D ALK+ + M  +G+      + V I   C+  +L    S+L E+     S+ N +   
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY-- 315

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            L+I G  KG+  + A  ++ E+             I    +     V  +E V++K + 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSH-------GINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 290 L-------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           L       G+ P+   Y   I G   E+ + +  EL   +      I       ++ G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           SS D   A      MI  G  P +   + L K   + ++  + + V K +       D+ 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL-------------------M 442
            YN ++  L  + R+ EA   + EM   GL P+   Y +                    M
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 443 EAC----------------CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             C                C++  +  A   +  M   G  G+ KTY +L++   +  ++
Sbjct: 549 RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A  +F  M  KG+APD  +Y  L+ G  +  N+Q A  +F++ V   +     I +  
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 547 MISLCRRGHFLVATKLLRGLS 567
           +   CR G    A +LL  +S
Sbjct: 669 LGGFCRSGEIEKAKELLDEMS 689


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 228/469 (48%), Gaps = 5/469 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++  L   +++    S+L ++    ++LD+  Y  +I  L++G+N   A  + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +  +I P + +  + V++ +G ++ A  +FD M   G+      +   I  +C    +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            Q   +L E++KR N +I+       ++ G C    ++ A+ ++ E+    C+P+ + Y 
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            + + F L  S F   + VLK+ ++ G+AP    Y   I+GL   +R+ EA+     +V 
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +     A I G + + +  SA  +   M E G +P     + L    CK+ K  E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIE 575

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
               Y+ +       D ++Y V+++ L  + ++ +A  + +EM+ KG+ PDV  Y  L+ 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   ++ A  ++D+M   G + N+  YN+L+  F   GEIE A  L   M  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +A TY ++++G C+  +L  AF +F++     ++    + +T +   CR
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 199/497 (40%), Gaps = 78/497 (15%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   SP +Y +++K +  S  ++   +++K++  +    +  +Y  +I + +Q    
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A  V  E+K   + I P+I C NSL+  L+    +D A     EM   G++ +   +G
Sbjct: 469 GDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            FI  + E ++       + E+R  E  ++   V+   +I+ +CK ++V EA      + 
Sbjct: 527 AFISGYIEASEFASADKYVKEMR--ECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMV 584

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +    D   Y ++         V + E + ++ R  G+AP    Y   I G        
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF------- 637

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
              +LG +                         + A   F+ M+E+G  P +   + L  
Sbjct: 638 --SKLGNM-------------------------QKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C+  + ++  E+   +S      +  +Y  ++   C SG L EA+ +  EMK KGL P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 434 DVSFYNSLMEACCREDLLRPA--------------------------------------K 455
           D   Y +L++ CCR + +  A                                       
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L D  F      N  TYNI+I    + G +E A  LFH M    + P   TYTSLL G 
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 516 CQETNLQAAFEVFNKSV 532
            +       F VF++++
Sbjct: 851 DKMGRRAEMFPVFDEAI 867



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 42/410 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALK 175
           D+  Y  ++  L +      A  +F E++   + I P++ +   L+   +  G +  A  
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM   G+  + I + + +  FC + ++ +   +LDE+  +   +   +V    II G
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK--GLHPNAVTYCTIIDG 706

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +CK   + EAF++ DE++++   PD   Y  + +    +  V ER + +    K G A  
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV-ERAITIFGTNKKGCASS 765

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
           T  +   I                 V   GK  +  +VLN L+        +   V +N 
Sbjct: 766 TAPFNALI---------------NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI+                LCK    +   E++  +   +    + +Y  +++     GR
Sbjct: 811 MIDY---------------LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-----SGCSGNL 470
             E + V  E    G++PD   Y+ ++ A  +E +   A  L DQMFA      GC  ++
Sbjct: 856 RAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            T   L+S F++VGE+E A ++  NM+     PD+ T   L+   C  +N
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 132/608 (21%), Positives = 240/608 (39%), Gaps = 92/608 (15%)

Query: 36  QTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQP-------NFTHSPL--- 85
            TL    L   ++P +V  V+    +   S  L FFNW   Q        +F+   L   
Sbjct: 49  DTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLC 108

Query: 86  SYHSILKSLSLSRQI--------NAIDSVLK--QVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ S  K+LS+  ++            S+++  Q  V K + D  ++  +    I     
Sbjct: 109 NFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGK-SDDGVLFGILFDGYIAKGYI 167

Query: 136 QKAFSVFNEVKFNCEDIGPEI------CNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           ++A  VF+        +G E+      C  LL  L     +D    ++  M  R V F  
Sbjct: 168 EEAVFVFSS------SMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDV 221

Query: 190 IGFGVFIWKFCE--NAKLGQVLSM------------LDEVRKRENSMINGSVIAV----- 230
             + + I   C   N +LG+ +              +D   K + SMI   ++ +     
Sbjct: 222 KTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYD 281

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G CK KR+E+A  +L E+                                     L
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMD-----------------------------------SL 306

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSA 349
           GV+   + Y   I GL+  R    AK L   +VS    I   + +  I  +S       A
Sbjct: 307 GVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKA 366

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F+ MI  G +P     ++L +  C+     +  E+   +   +      +Y  +V  
Sbjct: 367 KALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           +C+SG L  AY +++EM   G  P+V  Y +L++   +      A ++  +M   G + +
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  YN LI   S+   ++ A      M+E G+ P+A TY + + G  + +   +A + + 
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA-DKYV 545

Query: 530 KSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADA 586
           K +    +L   +L T +I+  C++   + A    R +     LG + ++ +L+  L   
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605

Query: 587 REVEMAIE 594
            +V+ A E
Sbjct: 606 DKVDDAEE 613



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 172/441 (39%), Gaps = 52/441 (11%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D ALK+ + M  +G+      + V I   C+  +L    S+L E+     S+ N +   
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY-- 315

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            L+I G  KG+  + A  ++ E+             I    +     V  +E V++K + 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSH-------GINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 290 L-------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           L       G+ P+   Y   I G   E+ + +  EL   +      I       ++ G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           SS D   A      MI  G  P +   + L K   + ++  + + V K +       D+ 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL-------------------M 442
            YN ++  L  + R+ EA   + EM   GL P+   Y +                    M
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 443 EAC----------------CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             C                C+++ +  A   +  M   G  G+ KTY +L++   +  ++
Sbjct: 549 RECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A  +F  M  KG+APD  +Y  L+ G  +  N+Q A  +F++ V   +     I +  
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 547 MISLCRRGHFLVATKLLRGLS 567
           +   CR G    A +LL  +S
Sbjct: 669 LGGFCRSGEIEKAKELLDEMS 689


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/550 (23%), Positives = 247/550 (44%), Gaps = 20/550 (3%)

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           T    AL  FNWAS+QPNF  S   Y  IL+ L  +     +  VL+++K++    D  +
Sbjct: 75  TDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGI 134

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNC---ED---IGPE--ICNSLLAVLASDGYIDNA 173
           +   + S   GK     F +++EV       ED   I P+    N LL VL     +   
Sbjct: 135 FLIFVESY--GK-----FELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLV 187

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
                 M  R +      F + I   C+  ++   + M++E+      +         I+
Sbjct: 188 ESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSY--GLSPDETTFTTIM 245

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            G+ +G  ++ A ++ +++    C    +   ++   F   G + +    +++    G  
Sbjct: 246 QGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFR 305

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVF 352
           P    Y   + GL        A E+ + ++ G    D    N+LI  +  + +   A+  
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKI 365

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            + M+ +   P   T + +  +LCK N+ DE  E+ ++L++     D+ ++N ++  LC 
Sbjct: 366 LDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCL 425

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           S   + A  + +EMK KG  PD   YN L+++ C    L  A  L  +M  +GC+ N+  
Sbjct: 426 SSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVI 485

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  F +   IE A  +F  M  +GV+ D+ TY +L++GLC+   ++ A ++ ++ +
Sbjct: 486 YNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
              +   +   ++ +   C+ G    A  +++ ++S   + D  ++  L+  L  A  V+
Sbjct: 546 MEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ 605

Query: 591 MAIEHIKWIQ 600
           +A   ++ IQ
Sbjct: 606 VASRLLRSIQ 615



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 210/482 (43%), Gaps = 9/482 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ +L  L  + ++  ++S    +   +I  D S +  +I +L +    + A  +  E+ 
Sbjct: 171 YNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMP 230

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                       +++      G +D AL++ ++M   G   + +   V I  FC+  ++ 
Sbjct: 231 SYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRID 290

Query: 207 QVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           Q LS + E      R +     +     +++G CK    + A +V+D + +    PD   
Sbjct: 291 QALSFIQEAVSEGFRPDQFTYNT-----LVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT 345

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +      +G + E   +L +      +P    Y   I  L  E R+ EA E+  ++ 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           S     D    N+LI G   S + +SA+  F  M  KG  P   T + L  +LC   K +
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + + K +  N    ++  YN ++   C + R+ EA  +  EM+ +G+  D   YN+L+
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  C+   +  A +L DQM   G   +  TYN L++ F + G+I+ A  +   M   G  
Sbjct: 526 DGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCN 585

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           PD  TY +L+ GLC+   +Q A  +        ++L     +  + +L +R     A +L
Sbjct: 586 PDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRL 645

Query: 563 LR 564
            R
Sbjct: 646 FR 647



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 155/394 (39%), Gaps = 50/394 (12%)

Query: 56  INPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           ++P + T++SL  G               Q  +   SP  ++Y++I+ SL    +++   
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT 398

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
            + + +    I  D   +  +I  L    N + A  +F E+K           N L+  L
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
            S   ++ AL +  EM   G   + + +   I  FC+N ++ +   + DE+  +  S   
Sbjct: 459 CSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVS--R 516

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            SV    +I G CK KRVE+A +++D++ +   +PD   Y  +   F   G + +   ++
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--- 341
           +     G  P    Y   I GL    R+  A  L   I      +     N +I ++   
Sbjct: 577 QTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKR 636

Query: 342 --------------SSIDPRSAIVF-----------------FNF---MIEKGRVPTLST 367
                            +P  AI +                  +F   MIE+G +P  S+
Sbjct: 637 NRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSS 696

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              L++ LC  +  D LV++  ++     F++ E
Sbjct: 697 FVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSERE 730


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/562 (23%), Positives = 239/562 (42%), Gaps = 70/562 (12%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF   +   +F H+PL+Y +++K L   R I+ I  +L+ +K+  I+ +  ++  +
Sbjct: 55  LALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIV 114

Query: 126 IPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           I +  +    ++A   F  + +F C+    +I N +L  L S+        +++ M   G
Sbjct: 115 INAYRRAGLAEQALKTFYRIGEFGCKP-SVKIYNHVLDALLSENKFQMINGIYNNMKRDG 173

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEV--------------------------RKR 218
           +E +   + + +   C+N ++     +L E+                            R
Sbjct: 174 IELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAR 233

Query: 219 ENSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           E SM   S + V   +I+GFC+  ++EE F++ +E+ +    PD I Y  V      MG+
Sbjct: 234 ELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGN 293

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V     VL K    G +P  + +   + G  +  R+CEA +L                  
Sbjct: 294 VEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDL------------------ 335

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                           +N MI++G  P     + L   LC   K  E V V + +  N  
Sbjct: 336 ----------------WNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGV 379

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F +  +Y+ ++     +G L  A  +  +M   G  P+V  Y  +++  CR  +   A  
Sbjct: 380 FPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALH 439

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L + M    C  N  T+N  I      G+ E A+++ + M + G AP+ TTY  +L+GL 
Sbjct: 440 LIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLF 499

Query: 517 QETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
                + A ++  +     +  +++   +ILS F  +   +G   +A KLL G +     
Sbjct: 500 NAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKP--D 557

Query: 573 SDSHVILLKSLADAREVEMAIE 594
           S ++  ++ +     EV+ AI+
Sbjct: 558 SITYNTVIYAYCKQGEVKTAIQ 579


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/550 (23%), Positives = 255/550 (46%), Gaps = 26/550 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++       +++    +LK++K + +  +   Y  +I    +      A+ +F ++
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 103

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             N     P +   N+LL+ L  +G +D A ++ DEM  RG++     +   +   C+  
Sbjct: 104 VEN--GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 161

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           K+   L + ++     N      V+A   +I G CK  R++EA K+ +++R   C+PD +
Sbjct: 162 KIDMALKVFED---NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVV 218

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEV 321
            +  + +       + E + VL+        P    Y   I GL    ++ +A+E+   +
Sbjct: 219 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278

Query: 322 IVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           IV G   I+ +V+  N+LI G   +    SA++    M   G +P + T + L   LCK 
Sbjct: 279 IVRG---IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 335

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            ++ E   ++  + A     D+ +Y+ ++   C   R+  A  +  +M ++ + PDV  +
Sbjct: 336 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTF 395

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           ++L+E  C   L+  A++L ++M AS CS ++ TY  L+  F +VG +  A R+   M +
Sbjct: 396 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK 455

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +G  P+  TYT+L++  C+      A+    E+    V  +V+  RS++  F    C  G
Sbjct: 456 RGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGF----CGTG 511

Query: 555 HFLVATKLLRGLSSDLG-HSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
               A K+L  L  D    +D  ++ +++  L     +  A+E ++ I++S      +I 
Sbjct: 512 DLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 571

Query: 612 AELFASLSSS 621
             L   L   
Sbjct: 572 VALIRGLCQG 581



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/498 (22%), Positives = 212/498 (42%), Gaps = 45/498 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++       +++    + +Q+  N    +   Y  ++  L +     +A+ + +E
Sbjct: 78  VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 137

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++           ++L+A L   G ID ALK+F++ S+       + +   I   C+  +
Sbjct: 138 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +   + +++R  ENS     V    ++ G CKG R++EA +VL+ +  R C P+ I Y
Sbjct: 198 LDEACKLFEKMR--ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITY 255

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +     G V + + V K+    G+ P    Y   I G  +   +  A  L E + +
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 315

Query: 325 GKFTIDDDVLNALIGSVSSID--PRSAIVF------------------------------ 352
                D    N LI  +      P +  +F                              
Sbjct: 316 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 375

Query: 353 ----FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
               F+ M+++  +P + T S L +  C     D+   + + + A+D   D+ +Y  +V 
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  GR+ EA  V++ M ++G  P+V  Y +L++A CR      A KL ++M  +G   
Sbjct: 436 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP 495

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           N+ TY  LI  F   G++E A ++   +  ++    D   Y  +++GLC+   + AA E+
Sbjct: 496 NVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALEL 555

Query: 528 F------NKSVNHDVMLA 539
                       HD+ +A
Sbjct: 556 LEAIKQSGTPPRHDIYVA 573



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 181/392 (46%), Gaps = 3/392 (0%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A   F +M  +G   +   + V I  FC+  K+ +   +L E++  E+ +    V    +
Sbjct: 26  ATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK--ESGLAPNVVTYSTV 83

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           IHGFC+  +V+ A+K+  ++    C P+ + Y  +       G + E   +L + R+ G+
Sbjct: 84  IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL 143

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIV 351
            P    Y   + GL    +I  A ++ E   +G    D    + LI  +        A  
Sbjct: 144 QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACK 203

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F  M E    P + T + L   LCK ++  E  +V + +   +   ++ +Y+ ++  LC
Sbjct: 204 LFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLC 263

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G++R+A  V + M  +G++P+V  YNSL+   C  + +  A  L ++M A+GC  ++ 
Sbjct: 264 KTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDII 323

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TYN LI    + G    A RLF +M  K   PD  TY+ L+ G C+   +  A  +F+  
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +   V+      ST +   C  G    A +LL
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 415



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 171/368 (46%), Gaps = 7/368 (1%)

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I G CK  R+ EA     +++ +   P+   Y ++   F  +  V    ++LK+ ++
Sbjct: 11  TIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKE 70

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDP 346
            G+AP    Y   I G   + ++  A +L   +V      +    N L+  +     +D 
Sbjct: 71  SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD- 129

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A    + M E+G  P   +   L   LCK  K D  ++V++  S  D   D+ +Y+ +
Sbjct: 130 -EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC +GRL EA  + ++M+    +PDV  + +LM+  C+ D L+ A+++ + M    C
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N+ TY+ LI    + G++  A  +F  M+ +G+ P+  TY SL+ G C    + +A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
           +  +      +      +T +  LC+ G    A +L   + +   + D  ++  L+    
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 585 DAREVEMA 592
               ++MA
Sbjct: 369 KLERIDMA 376



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 175/423 (41%), Gaps = 42/423 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++Y S++  L  + Q+     V K++ V  I  +   Y  +I           A
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 306

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             +  E+        P+I   N+L+  L   G    A ++F +M  +      I +   I
Sbjct: 307 LLLMEEMTAT--GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 364

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             FC+  ++    ++ D++ K+  +++   V    ++ G+C    V++A ++L+E+   +
Sbjct: 365 GGFCKLERIDMARTLFDDMLKQ--AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 422

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD   Y  + + F  +G + E   VLK+  K G  P    Y   I         C A 
Sbjct: 423 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI------DAFCRA- 475

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
                   GK T+   +L  ++G+                   G  P + T  +L    C
Sbjct: 476 --------GKPTVAYKLLEEMVGN-------------------GVQPNVITYRSLIGGFC 508

Query: 377 KRNKSDELVEVYKVLSANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
                +E  ++ + L  ++    DM +Y VM+  LC +GR+  A  +++ +K+ G  P  
Sbjct: 509 GTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRH 568

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGALRLFH 494
             Y +L+   C+   L  A ++ ++M  S  S  N + Y  +I + +  G  E A  L  
Sbjct: 569 DIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALAD 628

Query: 495 NML 497
            +L
Sbjct: 629 ELL 631



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ +M+  LC + RL EA     +MK+KG  P+   YN L+   C+   +  A  L  +M
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             SG + N+ TY+ +I  F    +++ A +LF  M+E G  P+  TY +LL GLC+   +
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
             A+E+ ++     +   +    T M  LC+ G   +A K+    S+     D  ++  L
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 580 LKSLADAREVEMAIEHIKWIQESS 603
           +  L     ++ A +  + ++E+S
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENS 212



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 43/169 (25%)

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-------- 517
           C  N+ T+ I+I    +   +  A   F  M +KG  P+  TY  L+ G C+        
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 518 ---------------------------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
                                      +T +  A+++F + V +  M      +T +  L
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 551 CRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
           CR G    A +LL     RGL  D    D+   L+  L    +++MA++
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDT---LMAGLCKTGKIDMALK 168


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 223/499 (44%), Gaps = 19/499 (3%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ L+ SLV  V+N   + +  L + FF WA +Q  ++H+P  +  +L  L  +  +NA
Sbjct: 100 FRNQLNDSLVVEVMNN--VKNPELCVKFFLWAGRQIGYSHTPQVFDKLLDLLGCN--VNA 155

Query: 103 IDSV----LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158
            D V    L ++K +   L   +  F++    +      A      +K           N
Sbjct: 156 DDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYN 215

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EM              F +  C+  K  +   ++DE    
Sbjct: 216 ALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAE-- 273

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               +  +V    ++ G C+    EEA  +L  +R   C P+ + YRI+       G + 
Sbjct: 274 --DFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLG 331

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
             + +L      G  P    +   I      R    A +L + ++         V N  I
Sbjct: 332 RCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFI 391

Query: 339 GSVSSID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           GSV S +  P S I+      ++ M++ G V     +SN ++ LC   K D+  ++   +
Sbjct: 392 GSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEM 451

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
               +  D  +Y+ ++ FLC + ++ +A+ + +EMKR G+ P V  Y  L+++ C+  L+
Sbjct: 452 MGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLI 511

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + A+K +D+M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+  TYT+L
Sbjct: 512 QQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTAL 571

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++G C+   ++ A +++ +
Sbjct: 572 IDGHCKAGQIEKACQIYAR 590



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 212/502 (42%), Gaps = 39/502 (7%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  D A K+  EM  +G       +   I   C+ +K+ +  S+ +E+++  N ++
Sbjct: 435 LCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKR--NGIV 492

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSV 277
                  ++I  FCK   +++A K  DE+  + C P+ + Y  +      A++  +   +
Sbjct: 493 PSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADEL 552

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI---CE--AKELGEVIVSG---KFTI 329
           FE  ++       G  P    Y   I G     +I   C+  A+  G++  S     F +
Sbjct: 553 FEMMLLE------GCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKL 606

Query: 330 DDD--------VLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           D +           AL+  +   +  + A    + M+  G  P       +    CK  K
Sbjct: 607 DHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGK 666

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             +  EV+  +S   Y  ++ +Y+  +  L    RL     V+ +M      P+V  Y  
Sbjct: 667 LQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTE 726

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++  C+      A KL  +M   GC+ N+ TY  +I  F + G+IE  L LF +M  KG
Sbjct: 727 MVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
            AP+  TY  L+   C    L  A+++ ++         + ILS   I       F+ + 
Sbjct: 787 CAPNFITYRVLINHCCSNGLLDEAYKLLDEM--KQTYWPKHILSHRKIIEGFSQEFITSI 844

Query: 561 KLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML---QEISAELF 615
            LL  LS +  +     + IL+ +   A  +E+A++ ++ I  SSP+     + + A L 
Sbjct: 845 GLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEIS-SSPSHAVSNKYLYASLI 903

Query: 616 ASLSSSSYPEPILLLLHALQEK 637
            +LS +S  +  L L  ++  K
Sbjct: 904 ENLSHASKVDKALELYASMISK 925



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 111/506 (21%), Positives = 201/506 (39%), Gaps = 89/506 (17%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALK 175
           D S Y  +I  L      +KAFS+F E+K N   I P +     L+      G I  A K
Sbjct: 459 DDSTYSKVIGFLCDASKVEKAFSLFEEMKRN--GIVPSVYTYTILIDSFCKAGLIQQARK 516

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKF--------------------CE------------NA 203
            FDEM H+G   + + +   I  +                    C+            + 
Sbjct: 517 WFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHC 576

Query: 204 KLGQV---------------LSMLDEVRKRENSMINGSVIAVL--IIHGFCKGKRVEEAF 246
           K GQ+                S +D+  K +++   G  +     ++ G CK  RV+EA 
Sbjct: 577 KAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           ++LD +    C+P+ I Y  V + F  +G + + + V  K  + G +P    Y  FI  L
Sbjct: 637 ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCL 696

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTL 365
             + R+    ++   ++    T +  +   ++  +  I     A      M EKG  P +
Sbjct: 697 FKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNV 756

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + +     K  K ++ +E+++ + +     +  +Y V+++  C++G L EAY ++ E
Sbjct: 757 VTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDE 816

Query: 426 MK-----------RKGLD----------------------PDVSFYNSLMEACCREDLLR 452
           MK           RK ++                      P  S Y  L++   +   L 
Sbjct: 817 MKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLE 876

Query: 453 PAKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
            A  L +++ +S      N   Y  LI   S   +++ AL L+ +M+ K V P+ +    
Sbjct: 877 VALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVH 936

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDV 536
           L++GL +    Q A ++ +     D+
Sbjct: 937 LIKGLIKVDKWQEALQLSDSICQMDI 962



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 2/192 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+ +T + L +   + +K D    V + + +  +  D  + +     LC  G+ REA
Sbjct: 206 GYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREA 265

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + +I E +     PD  FYN ++   C   L   A  +  +M +S C  N+ TY IL+S 
Sbjct: 266 FDLIDEAE--DFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSG 323

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G++    R+   M+ +G  P+   + SL+   C+  +   A+++F K +       
Sbjct: 324 CLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPG 383

Query: 540 RSILSTFMISLC 551
             + + F+ S+C
Sbjct: 384 YLVYNIFIGSVC 395



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 2/235 (0%)

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           D L  L+G   + D R  + F   + +         L+ L +  C+    +  +E    L
Sbjct: 143 DKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRL 202

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
               Y     +YN ++     + +L  AY V +EM       D    +    + C+    
Sbjct: 203 KDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKC 262

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           R A  L D+  A     +   YN ++S   E    E A+ + H M      P+  TY  L
Sbjct: 263 REAFDLIDE--AEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRIL 320

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           L G  ++  L     + +  +       R I ++ + + C+   +  A KL + +
Sbjct: 321 LSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKM 375


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/586 (22%), Positives = 252/586 (43%), Gaps = 41/586 (6%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI 103
           R  LSP +V +V+    L     AL FF WA  +  + H     + +L  L  + Q +  
Sbjct: 88  RGQLSPEIVGKVLQR--LIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQA 145

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK----------------- 146
             + +     +   D+  Y  +I   I+      A+ +F+E+                  
Sbjct: 146 HDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRG 205

Query: 147 ----FNCED-----------IGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
                 C D             P+    N+++  L+    +D+A+++ +EM   G   + 
Sbjct: 206 LCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNV 265

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
             +   +  FC+  ++   L +L+++  R        V    +I+G CK  +V+EA +V+
Sbjct: 266 FSYNTVLHGFCKANRVENALWLLEQMVTR--GCPPDVVSYTTVINGLCKLDQVDEACRVM 323

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           D++  R C+P+ I Y  + + F  +G +     +++K  + G  P    Y   +      
Sbjct: 324 DKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR 383

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             +  A ++ ++++      D    + +I G   +   R A      MI +G  P ++ L
Sbjct: 384 NDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           S L   LCK    D   E+ ++    D   D+ +Y++++  LC + RL EA   +  M +
Sbjct: 444 STLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK 503

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
               PDV  YNS+++  C+   +  A  L+D+M A+G   ++ TY+I+I  F +   ++ 
Sbjct: 504 NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDS 563

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A ++   M E    PD  TY++L+ GLC+   +  AF+VF + +           +T + 
Sbjct: 564 AFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLID 623

Query: 549 SLCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMA 592
            LC+      A ++L  +       DS  +  L+  L +A  +E A
Sbjct: 624 GLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEA 669



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/594 (23%), Positives = 258/594 (43%), Gaps = 58/594 (9%)

Query: 47   LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL-SLSRQINAIDS 105
            L+ ++V +V+    + +   ALGFF+WA+ Q  + H   + + +L++L  L R  +A+  
Sbjct: 809  LTTTVVGKVLQG--VRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDAL-- 864

Query: 106  VLKQVKVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
               QV  NK+    +++ F  +I  L +  +   A+ +  E+  +       + N ++  
Sbjct: 865  ---QVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKG 921

Query: 164  LASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L S   +D+AL++F EM   G        +   +    ++ K+     +++++  +  S 
Sbjct: 922  LCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCS- 980

Query: 223  INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
                V    ++HG CK  +++EA  +L  +    C P+ + Y  + +    +G + E   
Sbjct: 981  -PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 1039

Query: 283  VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
            +L++    G  P    Y   +       +  +A  L EV+V   +  +    N+L+    
Sbjct: 1040 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFC 1099

Query: 343  SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D    A    + MI+KG VP + + + +   LCK  K  E V + + + +N+   D+ 
Sbjct: 1100 KKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV 1159

Query: 402  SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            ++N ++  +C + R+  AY +   ++  G  P++  YNSL+   C+      A+ L  +M
Sbjct: 1160 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 1219

Query: 462  F-ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---------------- 504
                GCS ++ TYN +I    +   ++ A +LF  ML  G+APD                
Sbjct: 1220 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279

Query: 505  -------------------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
                               A TY +L++G C+  NL  A E+    ++          S 
Sbjct: 1280 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSI 1339

Query: 546  FMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
            F+  L +RG       L+ T L  GL  D   + ++  LLK   DA   E A++
Sbjct: 1340 FIDWLSKRGRLRQAGELLETMLRAGLVPD---TVTYNTLLKGFCDASLTEDAVD 1390



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 222/489 (45%), Gaps = 11/489 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  LS S +++    +L+++  N    +   Y  ++    +    + A  +  +
Sbjct: 231 VTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 290

Query: 145 -VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            V   C    P++ +  +++  L     +D A ++ D+M  RG + + I +G  +  FC 
Sbjct: 291 MVTRGCP---PDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC- 346

Query: 202 NAKLGQVLSMLDEVRK-RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             ++G +   ++ VRK  E      ++    I+H FC+   +E A +VL  +    C PD
Sbjct: 347 --RVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPD 404

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y  +   F   G + E   +L++  + G  P        I  L     I  A+EL  
Sbjct: 405 AINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR 464

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           + +      D    + LI ++        A  + + M++    P + T +++   LCK  
Sbjct: 465 MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSR 524

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + ++   ++  + A     D+ +Y++++   C    L  A+ +++ MK     PDV  Y+
Sbjct: 525 RINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYS 584

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+   C+   +  A  ++ +M   GC+ NL TYN LI    ++ ++E A  +   M ++
Sbjct: 585 ALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQ 644

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
              PD+ TYT L+ GLC  + L+ A+ V  +  +   +  R    T + +L +  +  + 
Sbjct: 645 SCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELV 704

Query: 560 TKLLRGLSS 568
            +LL+ + +
Sbjct: 705 EQLLKEMEA 713



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 196/458 (42%), Gaps = 20/458 (4%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++Y S+L  L  + +++   ++L+++  +  + +   Y  II    +     +A+ +  E
Sbjct: 984  VTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEE 1043

Query: 145  -VKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             V   C+   P +     LL      G  ++A+ + + M  +G   +   +   +  FC+
Sbjct: 1044 MVDGGCQ---PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 1100

Query: 202  NAKLGQVLSMLDEVRKRENSMIN-GSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRE 256
              ++ +   +L       +SMI  G V  V+    +I G CK  +V E   +L+++    
Sbjct: 1101 KDEVERACQLL-------SSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 1153

Query: 257  CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            C PD + +  + +       V     +    ++ G  P    Y   + GL   RR  +A+
Sbjct: 1154 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213

Query: 317  EL-GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L  E+      + D    N +I G   S     A   F  M+  G  P   T S +  +
Sbjct: 1214 YLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISS 1273

Query: 375  LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            LCK    DE   V +++  N +     +Y  ++   C +G L +A  ++Q +  KG  PD
Sbjct: 1274 LCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 1333

Query: 435  VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            V  ++  ++   +   LR A +L + M  +G   +  TYN L+  F +    E A+ LF 
Sbjct: 1334 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFE 1393

Query: 495  NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
             M + G  PD  TYT+L+  L  + + +      +KS+
Sbjct: 1394 VMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSM 1431



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 173/428 (40%), Gaps = 53/428 (12%)

Query: 51  LVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQ 99
           ++ R   P ++T+ +L  GF                 +  +  + ++Y++I+        
Sbjct: 326 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRND 385

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC- 157
           +     VL+ +       D+  Y  II    +    ++A  +  + ++  C    P++  
Sbjct: 386 MERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR---PDVAC 442

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            ++L+  L     ID+A ++             + + + I   C+  +L +  S LD + 
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMV 502

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K  N      V    ++ G CK +R+ +AF + D +R     PD + Y IV   F    +
Sbjct: 503 K--NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNN 560

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L++ ++    P    Y   I GL      C+A            T+D      
Sbjct: 561 LDSAFKMLERMKEAKCVPDVVTYSALINGL------CKAG-----------TVD------ 597

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       A   F  M+  G  P L T + L   LCK NK ++  E+ +++     
Sbjct: 598 -----------KAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSC 646

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +Y  +++ LC + RL EA+ V++EMK KG  PD   Y +L+ A  + + L   ++
Sbjct: 647 TPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQ 706

Query: 457 LWDQMFAS 464
           L  +M A+
Sbjct: 707 LLKEMEAT 714



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/458 (19%), Positives = 179/458 (39%), Gaps = 91/458 (19%)

Query: 158  NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            NSLL +      ++ A ++   M  +G   + + +   I   C+  K+ + + +L+++  
Sbjct: 1092 NSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS 1151

Query: 218  RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              N+ +   V    II   CK  RV+ A+++ + ++   C P+ + Y  +          
Sbjct: 1152 --NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRF 1209

Query: 278  FEREVVLKK-KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             + E +L++  RK G +P    Y   I GL   +R+  A +L   ++S     DD   + 
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 1269

Query: 337  LIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
            +I S+     +D  + ++    M++ G  P   T   L    CK    D+ +E+ ++L +
Sbjct: 1270 VISSLCKWRFMDEANNVL--ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLS 1327

Query: 394  NDYFTDMESYNVMVSFLCTSGRLR-----------------------------------E 418
               + D+ ++++ + +L   GRLR                                   +
Sbjct: 1328 KGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTED 1387

Query: 419  AYGVIQEMKRKGLDPDVSFYNSLM----EACCREDLLRP-AKKLWDQMF----------- 462
            A  + + M++ G +PD + Y +L+    +    +DLL   +K + D  F           
Sbjct: 1388 AVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLE 1447

Query: 463  -ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---------------------- 499
             +     +++    ++  F + G  + A ++F  M ++                      
Sbjct: 1448 ASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAF 1507

Query: 500  ---------GVAPDATTYTSLLEGLCQETNLQAAFEVF 528
                     GV PDA T+ SLL   C    L AA + F
Sbjct: 1508 GLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEF 1545



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 88/448 (19%), Positives = 188/448 (41%), Gaps = 39/448 (8%)

Query: 58   PYLLTHHSLALGF-----FNWA-------SQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
            P L+T++SL  G      F+ A       +++   +   ++Y++++  L  S++++    
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250

Query: 106  VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
            +  Q+  + +  D   Y  +I SL + +   +A +V   +  N  D G     +L+    
Sbjct: 1251 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 1310

Query: 166  SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
              G +D AL++   +  +G     + F +FI    +  +L Q   +L+ + +    ++  
Sbjct: 1311 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA--GLVPD 1368

Query: 226  SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            +V    ++ GFC     E+A  + + +R   C+PD   Y        L+G + +++    
Sbjct: 1369 TVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTT------LVGHLVDKK---S 1419

Query: 286  KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
             K  L    ++     F L   +  ++  + E+   +  G   +D      + G   S  
Sbjct: 1420 YKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVD------MFGKCGS-- 1471

Query: 346  PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            P+ A   F  M ++  V      S +        + ++   +++V+       D  ++  
Sbjct: 1472 PQDARKVFEGMDQRNVV----LWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLS 1527

Query: 406  MVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++  C +G L  A      + R  GL+P V  ++ +++   R  L+  A+   D M   
Sbjct: 1528 LLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAE---DLMLGM 1584

Query: 465  GCSGNLKTYNILISKFSEVGEIEGALRL 492
             C  +  T+N L+S +   G+ E ALR+
Sbjct: 1585 PCKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 211/464 (45%), Gaps = 13/464 (2%)

Query: 84  PLSYH--SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           P ++H  +IL SL  ++    + S+ KQ + N IT D      +I       +   AFSV
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           F  +            N+L+  L   G I  AL   D++  +G +   + +G  I   C+
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             +   V  +L   RK E   +   V+    II+  CK K + +A  V  E+ ++   PD
Sbjct: 175 TGETKAVARLL---RKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 231

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  +   F +MG + E   +L + +   + P    +   I  L  E ++ EAK L  
Sbjct: 232 VVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLA 291

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           V++      D    N+LI     +D  + A   F  M ++G  P +   +N+   LCK  
Sbjct: 292 VMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTK 351

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE + +++ +   +   D+ +YN ++  LC +  L  A  + + MK +G+ PDV  Y 
Sbjct: 352 MVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYT 411

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++  C+   L  AK+++ ++ A G   N+  Y +LI++  + G  + AL L   M +K
Sbjct: 412 ILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDK 471

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G  PDA T+  ++  L ++     A ++  +      M+AR +L
Sbjct: 472 GCMPDAVTFDIIIRALFEKDENDKAEKILRE------MIARGLL 509



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 141/309 (45%), Gaps = 3/309 (0%)

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
           K G  P        I GL     I +A    + +V+  F +D      LI  +       
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 349 AIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           A+      +E   V P +   + +  +LCK     +  +VY  +       D+ +Y  ++
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 239

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G L+EA+ ++ EMK K ++P+V  +N L++A  +E  ++ AK L   M  +   
Sbjct: 240 HGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            ++ TYN LI  +  V E++ A  +F++M ++GV PD   YT+++ GLC+   +  A  +
Sbjct: 300 PDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSL 359

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLAD 585
           F +  + +++      ++ +  LC+  H   A  L + +       D  S+ ILL  L  
Sbjct: 360 FEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCK 419

Query: 586 AREVEMAIE 594
           +  +E A E
Sbjct: 420 SGRLEDAKE 428



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 10/255 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+     P     +N+  +L        ++ ++K    N    D+ + +++++
Sbjct: 41  AVASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILIN 100

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C    +  A+ V   + ++G  P+    N+L++  C    ++ A    DQ+ A G   
Sbjct: 101 CFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQL 160

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  +Y  LI+   + GE +   RL   +    V PD   Y +++  LC+   L  A +V+
Sbjct: 161 DQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVY 220

Query: 529 N----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584
           +    K ++ DV+   +++  F    C  GH   A  LL  +   L + + +V     L 
Sbjct: 221 SEMIVKGISPDVVTYTTLIHGF----CIMGHLKEAFSLLNEMK--LKNINPNVCTFNILI 274

Query: 585 DAREVEMAIEHIKWI 599
           DA   E  ++  K +
Sbjct: 275 DALSKEGKMKEAKIL 289


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 259/548 (47%), Gaps = 21/548 (3%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S AL  FN AS++PNF+  P  Y  IL  L  S   + +  +L+ +K +   + +S +  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLI 123

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFD-- 178
           +I S  Q +   +   V   V +  +D G  P+    N +L +L  DG   N LK+ +  
Sbjct: 124 LIESYAQFELQDEILGV---VHWMIDDFGLKPDTHFYNRMLNLLV-DG---NNLKLVEIA 176

Query: 179 --EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
             +MS  G++     F V I   C   +L   + ML+++      ++        I+ G+
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY--GLVPDEKTFTTIMQGY 234

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPR 295
            +   ++ A ++ +++    C    ++  ++   F   G V +    + +   + G  P 
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
              +   + GL     +  A E+ +V++   +  D    N++I  +  + + + A+ F +
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLD 354

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            MI +   P   T + L   LCK N+ +E  E+ +VL++     D+ ++N ++  LC + 
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
             R A  + +EM+ KG +PD   YN L+++ C +  L  A  +  QM  SGC+ ++ TYN
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  F +  +I  A  +F  M   GV+ ++ TY +L++GLC+   ++ A ++ ++ +  
Sbjct: 475 TLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIME 534

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
                +   ++ +   CR G    A  +++ ++S+    D  ++  L+  L  A  VE+A
Sbjct: 535 GQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

Query: 593 IEHIKWIQ 600
            + ++ IQ
Sbjct: 595 SKLLRSIQ 602



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 207/477 (43%), Gaps = 10/477 (2%)

Query: 57  NPYLLTHHSLA--------LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLK 108
           +P+L+   S A        LG  +W             Y+ +L  L     +  ++    
Sbjct: 119 SPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHA 178

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           ++ V  I  D S +  +I +L +    + A  +  ++         +   +++     +G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEG 238

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            +D AL++ ++M   G  +S +   V +  FC+  ++   L+ + E+  ++    +    
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             L+ +G CK   V+ A +++D +      PD   Y  V      +G V E    L +  
Sbjct: 299 NTLV-NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMI 357

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
               +P T  Y   I  L  E ++ EA EL  V+ S     D    N+LI G   + + R
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+  F  M  KG  P   T + L  +LC + K DE + + K +  +     + +YN ++
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C + ++REA  +  EM+  G+  +   YN+L++  C+   +  A +L DQM   G  
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            +  TYN L++ F   G+I+ A  +   M   G  PD  TY +L+ GLC+   ++ A
Sbjct: 538 PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 171/402 (42%), Gaps = 7/402 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   +  ++  L +  + + A  + + +     D      NS+++ L   G +  A++  
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFL 353

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGF 236
           D+M  R    +T+ +   I   C   K  QV    +  R   +  I   V     +I G 
Sbjct: 354 DQMITRDCSPNTVTYNTLISTLC---KENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C  +    A ++ +E+R + C+PD   Y ++ +     G + E   +LK+    G A   
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G     +I EA+E+ + +     + +    N LI G   S     A    + 
Sbjct: 471 ITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQ 530

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI +G+ P   T ++L  + C+     +  ++ + +++N    D+ +Y  ++S LC +GR
Sbjct: 531 MIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG-CSGNLKTYN 474
           +  A  +++ ++ KG+      YN +++   R+     A  L+ +M      + +  +Y 
Sbjct: 591 VEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYR 650

Query: 475 ILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           I+       G  I  A+     +LEKG  P+ ++   L EGL
Sbjct: 651 IVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 138/594 (23%), Positives = 247/594 (41%), Gaps = 83/594 (13%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLS----------------- 86
           R +L P++V+RV+    L     A+ FF WA  +  F HS  +                 
Sbjct: 88  RGTLQPAVVSRVLQ--RLKDPQTAIVFFVWAGDR-GFKHSTFTRNCFLQTLLENGSSDRI 144

Query: 87  ------------------YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
                             YH ++KSL    QI+   ++L + KV     + SVY  +  +
Sbjct: 145 PAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRA 204

Query: 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVE 186
             +    + A  +F  +        P+    N+++         D AL+   EM+ R V 
Sbjct: 205 FCKTGRLKDALEIFRNIP------SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVA 258

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMING-----------SV 227
                + + I   C+ +K  +   ML E+  R         NS+++G           S+
Sbjct: 259 PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 318

Query: 228 IAVL--------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           +AV+              +I G CK + V+ A  ++DE       PD + Y I+A+    
Sbjct: 319 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCK 378

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E   ++K+    G  P    Y   I GL    +  +A EL E +VS  F  D   
Sbjct: 379 RGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ++ G         A+     M+++G  P++ T + L + LC+  + DE   ++K + 
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 498

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           + D   D  +Y  +V+  C S R +EA  V+  ++     P +  YN+LM+  C+E  L 
Sbjct: 499 SKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLD 555

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
               +++ M   GC  N+KTYNI++    + G+++ A     +M   G  PD  +Y  ++
Sbjct: 556 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 615

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +GL + +  + A +V ++ +   +       +T M   C+   F  A  +L+ +
Sbjct: 616 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 669



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 222/475 (46%), Gaps = 13/475 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ ++  L  + + +    +L ++    +T D+  +  I+  L +    ++A S+   
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAV 321

Query: 145 V-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + + NC    P  C  N+L++ L     +D A  + DE    G     + + +     C+
Sbjct: 322 MAERNCR---PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCK 378

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++ +   ++ E+  +        V    +I G CK  + E+A+++L+ L      PD 
Sbjct: 379 RGRIDEAFELVKEMSGK--GCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDV 436

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y I+ +     G + +   +++   K G  P    Y   + GL    R+ EA  + + 
Sbjct: 437 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 496

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +VS   T D     +L+ G   S   + A    + +  +G  P +   + L    CK  +
Sbjct: 497 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RG-TPYIDVYNALMDGYCKEGR 553

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE+  V++ ++      ++++YN+++  LC  G++ EA+  ++ M   G  PDV  YN 
Sbjct: 554 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 613

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++   +    + A+++ DQM  +G   +  TYN L+++F +    + A+ +  NM++ G
Sbjct: 614 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 673

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSV-NHDVMLARSILSTFMISLCRRG 554
           V PD  TY +L+ GL Q   L  A+E+ ++ + N  V+ A +  +T +  LC+ G
Sbjct: 674 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 728



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 205/460 (44%), Gaps = 15/460 (3%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T S ++Y ++++ L  + +++    + K++     T D+  Y  ++    +   T++A  
Sbjct: 468 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 527

Query: 141 VFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           V + ++       P  ++ N+L+     +G +D    +F++M+ RG   +   + + +  
Sbjct: 528 VVDGIRGT-----PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDG 582

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C++ K+ +    L+ +       +   V   +II G  K  + +EA +VLD++      
Sbjct: 583 LCKHGKVDEAFPFLESMH--SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIP 640

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + Y  +  +F       +   +LK   K GV P    Y   I GL    R+ +A EL
Sbjct: 641 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 700

Query: 319 -GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             E++ +G         N +I  +      + A++  + M   G      T +     LC
Sbjct: 701 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLC 760

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDV 435
           K  + DE      +LS  D   D  SY  ++  LC + +L  A  + +EM   KGL    
Sbjct: 761 KEGRLDE---ASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITS 817

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             +N L++A  +   L  A  L   M   GCS ++ TYN++I+   ++ +++ A  LF  
Sbjct: 818 HTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDE 877

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           M  +G+   + +YT L+ GLC +   + A +V  +  + D
Sbjct: 878 MAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSD 917



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/524 (21%), Positives = 221/524 (42%), Gaps = 42/524 (8%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T + ++Y++++  L  + +      +L+ +  +    D   Y  I+  L +     KA  
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 141 -VFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            V   +K  C    P +    +L+  L   G +D A  +F EM  +      + +   + 
Sbjct: 458 MVEGMLKRGCT---PSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVN 514

Query: 198 KFCENAKLGQVLSMLDEVRKR--------------------------ENSMINGSVIAV- 230
            +C++++  +   ++D +R                            E+    G V  + 
Sbjct: 515 GYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIK 574

Query: 231 ---LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              +++ G CK  +V+EAF  L+ +    C PD ++Y I+ +         E   VL + 
Sbjct: 575 TYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 634

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP- 346
            + G+ P    Y   +     E R  +A  + + ++      D+   N LI  +S  +  
Sbjct: 635 IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRL 694

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSN-LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
             A    + M+  G V +  T  N +   LCK     + + +   ++ +    +  +YN+
Sbjct: 695 GDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNI 754

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-S 464
            +  LC  GRL EA  ++ EM    L  +VS Y +++   C+ + L  A KL  +M A  
Sbjct: 755 FIDRLCKEGRLDEASSLLSEMDT--LRDEVS-YTTVIIGLCKAEQLDRASKLAREMVAVK 811

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G      T+N+LI  F++   ++ AL L   M+++G +P   TY  ++  LC+   +  A
Sbjct: 812 GLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKA 871

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +E+F++     ++ +    +  +  LC +G    A ++L  ++S
Sbjct: 872 WELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 915



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 356 MIEKGRV----PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           M++K +V    P +S  + L++  CK  +  + +E+++ + + D      +YN ++   C
Sbjct: 182 MLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAI----AYNAIIHGHC 237

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
                  A   ++EM  + + PDV  YN L++  C+      A ++  +M   G + +  
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T+N ++    + G+ E A  L   M E+   P   TY +L+ GLC++ N+  A ++ ++ 
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
           V+   +      S     LC+RG    A +L++ +S      +  ++  L+  L  A + 
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 590 EMAIE 594
           E A E
Sbjct: 418 EKAYE 422



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+  +  L    +++   S+L ++   +   D   Y  +I  L + +   +A  +  E
Sbjct: 750 VTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSYTTVIIGLCKAEQLDRASKLARE 806

Query: 145 ---VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
              VK  C  I     N L+        +D AL +   M  RG   S I + + I   C+
Sbjct: 807 MVAVKGLC--ITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCK 864

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             K+ +   + DE+  R   ++  SV   ++I+G C   R +EA +VL+E+   +C+ D 
Sbjct: 865 LDKVDKAWELFDEMAVR--GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDD 922

Query: 262 IAYRIVA 268
           + +  VA
Sbjct: 923 LKWEDVA 929



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%)

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T N  +    E G  +    +F  ML+ G APD+ TY  +++ LCQ   +  AF + +K+
Sbjct: 127 TRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKA 186

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                    S+ +    + C+ G    A ++ R + S
Sbjct: 187 KVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/548 (23%), Positives = 260/548 (47%), Gaps = 21/548 (3%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S AL  FN AS++PNF+  P  Y  IL  L  S   + +  +L+ +K ++  + +S +  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFD-- 178
           +I S  Q +   +  SV   V +  ++ G  P+    N +L +L  DG   N+LK+ +  
Sbjct: 124 LIESYAQFELQDEILSV---VDWMIDEFGLKPDTHFYNRMLNLLV-DG---NSLKLVEIS 176

Query: 179 --EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
             +MS  G++     F V I   C   +L   + ML+++      ++        ++ G+
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY--GLVPDEKTFTTVMQGY 234

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPR 295
            +   ++ A ++ +++    C    ++  ++   F   G V +    + +   + G  P 
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
              +   + GL     +  A E+ +V++   +  D    N++I  +  + + + A+   +
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            MI +   P   T + L   LCK N+ +E  E+ +VL++     D+ ++N ++  LC + 
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
             R A  + +EM+ KG +PD   YN L+++ C +  L  A  +  QM  SGC+ ++ TYN
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  F +  +   A  +F  M   GV+ ++ TY +L++GLC+   ++ A ++ ++ +  
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
                +   ++ +   CR G    A  +++ ++S+    D  ++  L+  L  A  VE+A
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

Query: 593 IEHIKWIQ 600
            + ++ IQ
Sbjct: 595 SKLLRSIQ 602


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/559 (22%), Positives = 252/559 (45%), Gaps = 33/559 (5%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI 103
           RD L+ ++V  V+    +    L + FF WA +Q  ++H+   Y+++ + L    +    
Sbjct: 99  RDFLNDAVVVAVLRS--VRTPELCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTT 156

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEICNSLLA 162
           + +L+++  +   +   +   I+    +     KA      +K F     G    N+L+ 
Sbjct: 157 ERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATY-NALVQ 215

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           VLA+ G +D   ++  EMS  G        G F    C+  +    L M++    RE+  
Sbjct: 216 VLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIE----REDFK 271

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           ++ +V+   +I G  +    +EA   L  +R   C P+ + YR +   F     +   + 
Sbjct: 272 LD-TVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKR 330

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           ++      G  P  + +   +      R    A +L   +          V N  IGS+ 
Sbjct: 331 IISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC 390

Query: 343 SID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           S +  P   ++      +  M+    V      +N ++ LC   K D+  ++ K++    
Sbjct: 391 SGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKG 450

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +  D  +Y+ +++FLC + ++ +A+ + QEMK  G+ PDV  Y  L+++ C+  L+  A+
Sbjct: 451 FVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQAR 510

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             +D+M + GCS ++ TY  L+  + +  ++  A  +FH M++ G AP+  TY++L++GL
Sbjct: 511 SWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGL 570

Query: 516 CQETNLQAAFEVFNKSVN--------------HDVMLARSILS--TFMISLCRRGHFLVA 559
           C+    Q A EV+ K +               H   +A ++++    +  LC+    + A
Sbjct: 571 CKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDA 630

Query: 560 TKLLRGLSSDLGHSDSHVI 578
            +LL  +SS+ G   +H+I
Sbjct: 631 QELLDVMSSN-GCEPNHII 648



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 20/371 (5%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  D A ++   M  +G    T  +   I   CE  K+ +   +  E++     +I
Sbjct: 430 LCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV--GVI 487

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
                  ++I  FCK   +E+A    DE+    C P  + Y  +   +     V +   +
Sbjct: 488 PDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDI 547

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
             +    G AP T  Y   + GL      C+A E  +           +V   +IG+  +
Sbjct: 548 FHRMVDAGCAPNTITYSALVDGL------CKAGESQKAC---------EVYAKMIGTSDN 592

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +    +  +F         P + T   L   LCK +K  +  E+  V+S+N    +   Y
Sbjct: 593 V---GSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIY 649

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++   C  G+L  A  V   M + G  P V  Y SL++A  ++  L  A K+  QM  
Sbjct: 650 DALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLE 709

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           S C+ N+ TY  +I     +GE + AL+L   M ++G  P+  TYTSL++GL +   +  
Sbjct: 710 SSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDM 769

Query: 524 AFEVFNKSVNH 534
           + ++F + +  
Sbjct: 770 SLQLFTQMITQ 780



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 114/554 (20%), Positives = 225/554 (40%), Gaps = 73/554 (13%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQI 100
           L+ S V   +N          +G F+ A Q      +  F     +Y  ++  L  + ++
Sbjct: 412 LASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKV 471

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEICN 158
                + +++K   +  D   Y  +I S  +    ++A S F+E+    E +G  P +  
Sbjct: 472 EKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM----ESVGCSPSVVT 527

Query: 159 --SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC---ENAKLGQVLSML- 212
             +LL        +  A  +F  M   G   +TI +   +   C   E+ K  +V + + 
Sbjct: 528 YTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMI 587

Query: 213 ---DEVR-------KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
              D V        +  +S+    V    +I G CK  +V +A ++LD +    C+P+ I
Sbjct: 588 GTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHI 647

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F  +G +   + V  +  K G  P  + Y   I  +  +RR+  A ++   +
Sbjct: 648 IYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQM 707

Query: 323 VSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +    T +     A+I  +  I + + A+   + M ++G  P + T ++L   L K  K 
Sbjct: 708 LESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKV 767

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  ++++  +       +  +Y V+++  C +G L EA+ ++ EMK+      V  Y S+
Sbjct: 768 DMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSV 827

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE--- 498
           ++   ++ +   +  L +++ + G       Y +LI  FS+ G +E AL L   M+E   
Sbjct: 828 VQGFSKKFI--ASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSS 885

Query: 499 -----------------------------------KGVAPDATTYTSLLEGLCQ----ET 519
                                              KGV P+ + +  L++GL +      
Sbjct: 886 SLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNE 945

Query: 520 NLQAAFEVFNKSVN 533
            LQ  + + ++ VN
Sbjct: 946 ALQLCYSMCDEGVN 959


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 147/575 (25%), Positives = 262/575 (45%), Gaps = 31/575 (5%)

Query: 46  SLSPSLVARVI----NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           +L P  VA V+    NP        AL  FN   ++  F H+ L+Y  +++ L    +  
Sbjct: 4   ALLPKHVAAVVKYQKNPLK------ALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFE 57

Query: 102 AIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--C 157
           A++ VL + ++N    L   VY   + +  +    Q+A  VF  + F NCE   P +   
Sbjct: 58  AMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCE---PSVQSY 114

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++ +L    Y D A K++  M  +G+      F + +  FC  ++      +L+ +  
Sbjct: 115 NAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPS 174

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +     + +V    +I GF +     EA ++ +E+      PD +A+  +       G V
Sbjct: 175 Q--GCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHV 232

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E +L K  K GV+P       FI G      + EA  L + +  G  T D    N L
Sbjct: 233 QESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRG-LTPDVITYNTL 291

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   +     A  +   M+ +G  P   T +++    CK        ++ +  +   +
Sbjct: 292 ICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGF 351

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +Y  +++ LC  G +  A  V  E   KGL P++   N+L++   ++ L+  A K
Sbjct: 352 VPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALK 411

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M  +GCS ++ TYN++I+   ++G +  A  L  + + KG  PD  T+ +L++G C
Sbjct: 412 LMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYC 471

Query: 517 QETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHF--LVATKLLRGLSSDL 570
           ++  L  A E+ ++  NH    DV+   SIL+     LC+ G +  ++ T  L      +
Sbjct: 472 KKLKLDNAIEIVDRMWNHGVSPDVITYNSILN----GLCKAGKYEDVMGTFKLMMEKGCV 527

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
            +  ++ IL +S   AR+VE A+  I+ +Q    T
Sbjct: 528 PNIITYNILTESFCKARKVEEALNLIEEMQNKGLT 562



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 227/521 (43%), Gaps = 27/521 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY++I+  L   R  +    V  +++   I  D   +   + S  +      A  + N +
Sbjct: 113 SYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNM 172

Query: 146 KF-NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               CE      C +++     + +   A ++F+EM   G+    + F   I   C    
Sbjct: 173 PSQGCESSAVAYC-TVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGH 231

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + +   +L++V KR    ++ ++  V + I GFC+   + EA ++LD +  R   PD I 
Sbjct: 232 VQESERLLNKVLKRG---VSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVG-RGLTPDVIT 287

Query: 264 YRIV----AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           Y  +     + FK    V E E  L+K    G  P    Y   I G      +  A ++ 
Sbjct: 288 YNTLICGLCKNFK----VVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQIL 343

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
                  F  D+    +LI G     D   AI  FN  +EKG  P L   + L K L ++
Sbjct: 344 RDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQ 403

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
               + +++   +S N    D+ +YN++++ LC  G + +A  ++ +   KG  PDV  +
Sbjct: 404 GLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTF 463

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L++  C++  L  A ++ D+M+  G S ++ TYN +++   + G+ E  +  F  M+E
Sbjct: 464 NTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMME 523

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           KG  P+  TY  L E  C+   ++ A     E+ NK +  DV+       T M   C  G
Sbjct: 524 KGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVV----NFGTLMKGFCDNG 579

Query: 555 HFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMA 592
               A +L + +      S    ++ I++ + A    + MA
Sbjct: 580 DLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMA 620



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 182/406 (44%), Gaps = 14/406 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L  +  +  A     +M + G E     +   I  +C   KLG ++   D++ +
Sbjct: 289 NTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYC---KLG-MMQNADQILR 344

Query: 218 RE--NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
                  +        +I+G C+   ++ A  V +E   +  KP+ +    + +     G
Sbjct: 345 DGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQG 404

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + +   ++ +  + G +P    Y   I GL     + +A  L    ++     D    N
Sbjct: 405 LILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFN 464

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G    +   +AI   + M   G  P + T +++   LCK  K ++++  +K++   
Sbjct: 465 TLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEK 524

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN++    C + ++ EA  +I+EM+ KGL PDV  + +LM+  C    L  A
Sbjct: 525 GCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGA 584

Query: 455 KKLW---DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            +L+   D+ +    S  + TYNI+I+ F+    +  A +LF+ M E G +PD+ TY  +
Sbjct: 585 YQLFKRVDEQYKF--SHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVM 642

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC--RRGH 555
           ++G C+  N+ + +      +   ++ + +     +  LC  RR H
Sbjct: 643 IDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVH 688



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 171/442 (38%), Gaps = 54/442 (12%)

Query: 52  VARVINPYLLTHHSLALGFF---------NWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           V R + P ++T+++L  G           ++  +  N  + P   +Y+SI+        +
Sbjct: 277 VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMM 336

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
              D +L+         D S Y  +I  L Q  +  +A +VFNE           +CN+L
Sbjct: 337 QNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTL 396

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVE------------FSTIG----------------- 191
           +  L+  G I  ALK+ +EMS  G                 IG                 
Sbjct: 397 VKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456

Query: 192 ------FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
                 F   I  +C+  KL   + ++D +    N  ++  VI    I++G CK  + E+
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMW---NHGVSPDVITYNSILNGLCKAGKYED 513

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
                  +  + C P+ I Y I+ E F     V E   ++++ +  G+ P   ++   + 
Sbjct: 514 VMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK 573

Query: 305 GLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRV 362
           G      +  A +L   V    KF+      N +I + +  ++   A   FN M E G  
Sbjct: 574 GFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFS 633

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T   +    CK    +       V         + ++  +++ LC   R+ EA G+
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGI 693

Query: 423 IQEMKRKGLDPDVSFYNSLMEA 444
           I  M  KG+ P+V   N++ EA
Sbjct: 694 IHLMVHKGIVPEV--VNTIFEA 713


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 147/603 (24%), Positives = 256/603 (42%), Gaps = 67/603 (11%)

Query: 47  LSPSLVARVI-NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           LSPS+V  +I NP    +  L   FF WAS+      S +S++ I+  L           
Sbjct: 57  LSPSIVTYIIKNP---PNSLLGFRFFIWASKFRRL-RSWVSHNMIIDMLIKDNGFELYWQ 112

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI--CNSLLA 162
           VLK++K    ++ +  +  +I +  +    +KA   F  +K F+C+   P++   N++L 
Sbjct: 113 VLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCK---PDVFTYNTVLH 169

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           V+     +  AL +++ M       +   F + I   C++ K    L M DE+ +R   +
Sbjct: 170 VMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRR--I 227

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +   +   +II G C+ ++ + A+++   ++   C PD + Y  +   F  +G V E   
Sbjct: 228 LPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALG 287

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +LK   K         Y   I GL   RR  +A+     +       D  +   ++  +S
Sbjct: 288 LLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLS 347

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                + A+   N M E+G VP     + L K  C     DE   ++  +S ND F+   
Sbjct: 348 KAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSAC 407

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD-- 459
           +Y +++  +C SG + +A  +  EM++ G  P V  +N+L++  C+   +  A+ L+   
Sbjct: 408 TYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM 467

Query: 460 ----------------------------------------------QMFASGCSGNLKTY 473
                                                         Q+  SG + N+ TY
Sbjct: 468 EIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITY 527

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           NILI  F + G I GA +LF  +  KG++PD+ TY +L+ GL      + AF V ++ + 
Sbjct: 528 NILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK 587

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA---DAREVE 590
           +       +  +FM   CRR    +A  L       +   DS V  LKS+    +  EVE
Sbjct: 588 NGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEV--LKSVEENFEKGEVE 645

Query: 591 MAI 593
            A+
Sbjct: 646 EAV 648



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/484 (20%), Positives = 204/484 (42%), Gaps = 34/484 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L       +++    +LK  + ++  LD   Y  +I  L + +  + A   +  
Sbjct: 267 VTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYR- 325

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K    +I P++     ++  L+  G   +AL++ +EM+ RG+   T  +   I  +C+ 
Sbjct: 326 -KMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDL 384

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  S+  E+ K  N   + +    ++I G C+   V +A ++ +E+    C P  +
Sbjct: 385 GLLDEAKSLHLEISK--NDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVV 442

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  + + F   G++ E+  +L  K ++G  P       F+       R+ +        
Sbjct: 443 TFNALIDGFCKAGNI-EKAQLLFYKMEIGRNPSL-----FL-------RLSQG------- 482

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE---KGRVPTLSTLSNLSKNLCKRN 379
                 +D   L  ++  +   D    +  +N +++    G  P + T + L    CK  
Sbjct: 483 --ANRVLDTASLQTMVEQLC--DSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAG 538

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             +   +++K L       D  +Y  +++ L ++ R  +A+ V+ ++ + G  P    Y 
Sbjct: 539 NINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYK 598

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           S M   CR + +  A  LW +   S    + +    +   F E GE+E A+R    M  K
Sbjct: 599 SFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENF-EKGEVEEAVRGLLEMDFK 657

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
                   YT  L GLCQ   L+ A ++F     H+V++        +  L + G+  +A
Sbjct: 658 LNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLA 717

Query: 560 TKLL 563
            ++ 
Sbjct: 718 AEIF 721



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 96/203 (47%), Gaps = 4/203 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           S+N+++  L         + V++E+KR G       +  L++A  + D++  A + ++ M
Sbjct: 93  SHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMM 152

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  ++ TYN ++        +  AL +++ ML+    P+  T++ L++G+C+    
Sbjct: 153 KDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKT 212

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD--LGHSDSHVI 578
           Q A ++F++     + L   I  T +IS LC+     VA +L   +     +  S ++  
Sbjct: 213 QNALQMFDEMTQRRI-LPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNA 271

Query: 579 LLKSLADAREVEMAIEHIKWIQE 601
           LL        V+ A+  +K+ ++
Sbjct: 272 LLHGFCKLGRVDEALGLLKYFEK 294


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 155/622 (24%), Positives = 266/622 (42%), Gaps = 56/622 (9%)

Query: 24  TRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWASQQPNF 80
           T  A +W  LL +      LR+S   ++P  + +++   L  + S ++  F+W   Q  +
Sbjct: 51  TDSANEWEKLL-KPFDLDSLRNSFHKITPFQLYKLLE--LPLNVSTSMELFSWTGSQNGY 107

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL----IQGKNTQ 136
            HS   Y  ++  L  + +   ID +L Q+K   I    S++  I+         G+ T+
Sbjct: 108 RHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTR 167

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
               + N   ++CE       N +L +L S      A  +F +M  R +  +   FGV +
Sbjct: 168 LMLEMRN--VYSCEPTFKSY-NVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVM 224

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             FC   ++   LS+L ++ K  +  +  SVI   +IH   K  RV EA ++L+E+ +  
Sbjct: 225 KAFCAVNEIDSALSLLRDMTK--HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 282

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD   +  V         + E   ++ +    G AP    Y   + GL    R+  AK
Sbjct: 283 CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK 342

Query: 317 ELGEVIVSGKFTIDDDVLNALI-------------------GSVSSIDPRSAIVF----- 352
           +L   I   +  I + +++  +                   G V  +   +++++     
Sbjct: 343 DLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKE 402

Query: 353 ---------FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                     + M  KG  P + + + L    CK  K DE   V   +SA+    +   +
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++S  C   R+ EA  + +EM RKG  PDV  +NSL+   C  D ++ A  L   M +
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N  TYN LI+ F   GEI+ A +L + M+ +G   D  TY SL++GLC+   +  
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDSHVI 578
           A  +F K +      +    +  +  LCR G    A +     +LRG + D+   +S   
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS--- 639

Query: 579 LLKSLADAREVEMAIEHIKWIQ 600
           L+  L  A  +E  +   + +Q
Sbjct: 640 LINGLCRAGRIEDGLTMFRKLQ 661



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 222/536 (41%), Gaps = 76/536 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++  ++K+     +I++  S+L+ +  +    +S +Y+ +I SL +     +A  +  E
Sbjct: 218 FTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +         E  N ++  L     I+ A KM + M  RG     I +G  +   C+  +
Sbjct: 278 MFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR 337

Query: 205 LGQVLSMLDEVRKRE----NSMINGSVI--------AVL------------------IIH 234
           +     +   + K E    N++I+G V         AVL                  +I+
Sbjct: 338 VDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+ K   V  A +VL ++R + CKP+  +Y I+ + F  +G + E   VL +    G+ P
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP 457

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
            T  +   I     E RI EA E+                                  F 
Sbjct: 458 NTVGFNCLISAFCKEHRIPEAVEI----------------------------------FR 483

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M  KG  P + T ++L   LC+ ++    + + + + +     +  +YN +++     G
Sbjct: 484 EMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 543

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  ++ EM  +G   D   YNSL++  CR   +  A+ L+++M   G + +  + N
Sbjct: 544 EIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCN 603

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ILI+     G +E A+     M+ +G  PD  T+ SL+ GLC+   ++    +F K    
Sbjct: 604 ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 663

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV-------ILLKSL 583
            +       +T M  LC+ G    A  LL     D G  D  V       ILL+S+
Sbjct: 664 GIPPDTVTFNTLMSWLCKGGFVYDACLLL-----DEGIEDGFVPNHRTWSILLQSI 714


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/516 (22%), Positives = 225/516 (43%), Gaps = 35/516 (6%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI---------------------NAIDS 105
           AL FF W +++P F H+  S+ ++L+ L+  R                        A+D+
Sbjct: 73  ALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMISCSGTAEDMREAVDA 132

Query: 106 V--LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           +  +++    ++ L    Y   + SL++   T+    +++++    E + P+    N+++
Sbjct: 133 IQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQ--EGLLPDTVTYNTMI 190

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKR 218
                +G +  A + F  +   G+E  T      +  +C    L +   +L M+  +  R
Sbjct: 191 MAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCR 250

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            N          ++I G C+ + V EA  +L  +    C P+   Y ++       G + 
Sbjct: 251 RNE-----YSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIH 305

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +  V+L +  + GV P    Y   I G     R+ +A  +  ++       DD   N+LI
Sbjct: 306 DARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLI 365

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
             +    P  A    N  I +G  PT+ T +N+    CK  K D+ + V  ++ ++    
Sbjct: 366 HGLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKL 425

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+++Y V++S L    RL+EA   + E+   GL P+V  Y S+++A C+   +  A +++
Sbjct: 426 DLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVF 485

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                 GC  N  TY+ LI    +  ++  A+ L   M E G+ P   TYT+L++G C++
Sbjct: 486 KLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK 545

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
                AF +F     + +       +    +LC+ G
Sbjct: 546 HEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG 581



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 155/364 (42%), Gaps = 4/364 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID+AL++   M     +     +GV I    +  +L +    L+E+    N +    VI 
Sbjct: 408 IDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFA--NGLSPNVVIY 465

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             II  +CK  +V  A +V        C+P+   Y  +         + +   ++ K ++
Sbjct: 466 TSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQE 525

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
            G+ P    Y   I G   +     A  L E++     T D+   N L  ++       A
Sbjct: 526 DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK--SGRA 583

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              ++F+++KG V T  T ++L     K   ++    + + +       D  +Y+V++  
Sbjct: 584 EEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQA 643

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC   +L EA  ++ +M  +G+  ++  Y  ++    +E     AK ++++M +SG   +
Sbjct: 644 LCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPS 703

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY + IS + ++G IE A  L   M   GVAPD  TY   + G      +  AF    
Sbjct: 704 AITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLK 763

Query: 530 KSVN 533
           + ++
Sbjct: 764 RMID 767



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/587 (19%), Positives = 214/587 (36%), Gaps = 98/587 (16%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F+ + +++ +I+     + +I+    V   +  +K  LD   Y  +I  LI+    ++A
Sbjct: 387 GFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEA 446

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
               NE+  N       I  S++      G +  AL++F    H G   +   +   I+ 
Sbjct: 447 KDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYG 506

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             ++ KL + ++++   + +E+ +  G +    +I G CK    + AF++ + +      
Sbjct: 507 LIQDQKLHKAMALI--TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLT 564

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-----------I 307
           PD  AY ++ +     G   E    L KK   GV      Y   + G            +
Sbjct: 565 PDEQAYNVLTDALCKSGRAEEAYSFLVKK---GVVLTKVTYTSLVDGFSKAGNTEFAAAL 621

Query: 308 VERRI------------------CEAKELGEVI----------VSGKFTIDDDVLNALIG 339
           +E+ +                  C+ K+L E +          V G       +++ +I 
Sbjct: 622 IEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIK 681

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                  +S    FN MI  G  P+  T +    + CK  + +E   +   +  N    D
Sbjct: 682 EGKHDHAKS---MFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPD 738

Query: 400 MESYNVMVS----------------------------------------------FLCTS 413
           + +YNV ++                                              ++ TS
Sbjct: 739 VVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTS 798

Query: 414 G-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           G     +L   + +++ M + GL+P    Y+S++   C+   L  A  L D M     S 
Sbjct: 799 GMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISP 858

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N + Y +LI    ++   E A     NM+E G  P   +Y  L+ GLC E +   A  +F
Sbjct: 859 NEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALF 918

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
              +  D              L + GH  + ++LL  + +     DS
Sbjct: 919 CDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDS 965



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/476 (18%), Positives = 189/476 (39%), Gaps = 40/476 (8%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q+   T   ++Y ++++      + +    + + ++ N +T D   Y  +  +L +    
Sbjct: 524 QEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRA 583

Query: 136 QKAFS-------VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           ++A+S       V  +V +           SL+   +  G  + A  + ++M + G +  
Sbjct: 584 EEAYSFLVKKGVVLTKVTYT----------SLVDGFSKAGNTEFAAALIEKMVNEGCKAD 633

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFK 247
           +  + V +   C+  KL + LS+LD++  R    + G+++A  +II    K  + + A  
Sbjct: 634 SHTYSVLLQALCKQKKLNEALSILDQMTLRG---VKGNIVAYTIIISEMIKEGKHDHAKS 690

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL- 306
           + +E+     KP  I Y +    +  +G + E   ++ +  + GVAP    Y  FI G  
Sbjct: 691 MFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCG 750

Query: 307 ----------IVERRI---CEAKELGEVIVSGKFTIDDDVLNALI----GSVSSIDPRSA 349
                      ++R I   CE       ++   F +   + NA      G  + I   + 
Sbjct: 751 HMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHF-LKMSLANAHYVDTSGMWNWIKLDTV 809

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M++ G  PT  T S++    CK  + +E   +   +   D   + E Y +++  
Sbjct: 810 WQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKC 869

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C      +A   +  M   G  P +  Y+ L+   C E     AK L+  +     + N
Sbjct: 870 CCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHN 929

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              + IL     + G ++   +L   M  +    D+ TY+ +   + + + +  ++
Sbjct: 930 EVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDSETYSMVTNNIHEASGMYESY 985


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 230/494 (46%), Gaps = 13/494 (2%)

Query: 82  HSPLSYHS--ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +SP +Y    +L+SL  S +I      ++Q+ V  +  D S +   I  L +      A 
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQ 70

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           +VF+ ++ +         N+LL+ L + G + +A  +++ M   G     + +   +  F
Sbjct: 71  TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGF 130

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+  KL + L + D   KR    +   V    +I+GFCK  +++EA ++L  +      P
Sbjct: 131 CKVGKLDEALKIFDGAVKR--GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVP 188

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKEL 318
           D + Y  +       G V E  +++  K   G +P    Y   I GL  E RR+  A++L
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLIVDK---GFSPNVITYSTLISGLCRELRRLESARQL 245

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E +V      D    NALI  ++     S A+  F  ++ +G  P + T + L   L K
Sbjct: 246 LEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLK 305

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            ++ +E  E++  L  +    D  +Y V +  LC +GR+ +A  ++++M  KG  PDV  
Sbjct: 306 EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVS 365

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+++   C+E  +  A+ L   M A GCS N  ++N LI      G+ + A+  F  ML
Sbjct: 366 HNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 425

Query: 498 EKGVAPDATTYTSLLEGLC---QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           ++GV P   TY  L++GLC   QE  ++ A  +F+  +    +      S  +  L + G
Sbjct: 426 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 485

Query: 555 HFLVATKLLRGLSS 568
               A +LL  + +
Sbjct: 486 KLDDARRLLGAMEA 499



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 202/487 (41%), Gaps = 90/487 (18%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL      G +D ALK+FD    RG     + +   I  FC+  KL +   +L  +  
Sbjct: 124 NTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183

Query: 218 RE--------NSMING---------------------SVIAV-LIIHGFCKG-KRVEEAF 246
                     NS++NG                     +VI    +I G C+  +R+E A 
Sbjct: 184 ESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESAR 243

Query: 247 KVLDELRIRECKPDFIAYRI----------VAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           ++L+++ +  CKPD ++Y            V+E  KL GSV  +          G  P  
Sbjct: 244 QLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ----------GYEPEV 293

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I GL+ E R+ EA EL   +V      D       I G   +     A++    
Sbjct: 294 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 353

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDEL--------------------------VEVYK 389
           M EKG VP + + + +   LCK  + DE                               K
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413

Query: 390 VLSANDYFTDM---------ESYNVMVSFLCTS---GRLREAYGVIQEMKRKGLDPDVSF 437
              A   F +M          +YN++V  LC +   GR++EA  +   M  KG  PDV  
Sbjct: 414 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 473

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y++L++   +   L  A++L   M A GC  N+ TYN LIS    + +++ AL LF  M+
Sbjct: 474 YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMV 533

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           EKG  PD  TY +++  LC++  +  A  +F+ S+   V+    +  + +  LC      
Sbjct: 534 EKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVD 593

Query: 558 VATKLLR 564
            A KLL+
Sbjct: 594 EALKLLQ 600



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 17/192 (8%)

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D+LV +Y          D  +  +++  L  SG++ +A+  ++++  KGL  D+S +N  
Sbjct: 6   DKLVRIYS--------PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIY 56

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   CR   +  A+ ++D M   G   N  TYN L+S     G +  A  L+  M++ G 
Sbjct: 57  ISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY 116

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFL 557
           +PD  TY +LL G C+   L  A ++F+ +V      DV+   ++++ F    C+     
Sbjct: 117 SPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGF----CKADKLD 172

Query: 558 VATKLLRGLSSD 569
            A ++L+ + S+
Sbjct: 173 EAQRILQRMVSE 184


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 210/464 (45%), Gaps = 13/464 (2%)

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI 156
           R I+A+    + ++ + I  D+ +Y  ++  L + K   +A ++ +E++   CE   P +
Sbjct: 59  RSIDAL-RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCE---PNV 114

Query: 157 C--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
              NSL+  L  +   D A ++F+ M       S + +   +       KL + +++  E
Sbjct: 115 VTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQE 174

Query: 215 VRKRENSMINGS-----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
           +  R +  ++       +   ++I G CK  RV +A ++L+ ++ R C PD I Y I+ +
Sbjct: 175 MLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVD 234

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                  V     VL++    G  P    Y   + GL   RR+ +A  L   +     T 
Sbjct: 235 GLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTP 294

Query: 330 DDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +      LI  +  +   + A      MI+KG  P L   + L   LCK ++ DE + + 
Sbjct: 295 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL 354

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           +   +     D+ +Y+ ++  LC S RL EA  ++  +K +G  PDV  Y++L++  C+ 
Sbjct: 355 RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA 414

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A  L++ M   GC  ++ TY+ LI    + G ++ A  L   M+  G  P   TY
Sbjct: 415 GKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 474

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            SL++GLC   +L  A E+  +    +   +    +  +  +CR
Sbjct: 475 NSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCR 518



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 22/408 (5%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   +  FC   ++ Q     DE+R +  +++    +  ++I G CK KR  +A +    
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSK--NLVPNVFLCSILIDGLCKAKRSIDALRCFRA 69

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++      D + Y  +         + +   +L + R  G  P    Y   I GL     
Sbjct: 70  MQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR-------VP 363
              A+EL E + S + +      N L+ G   +     A+  F  M+++          P
Sbjct: 130 PDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSP 189

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T S L   LCK N+  + VE+ + + A     D+ +Y ++V  LC   ++  A+ V+
Sbjct: 190 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVL 249

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           +EM   G  P++  YNSL+   CR   +  A  L   M   GC+ N+ TY  LI    +V
Sbjct: 250 REMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKV 309

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G ++ A  +  +M++KG  PD   Y  L+ GLC+   +  +  +  ++V+  +       
Sbjct: 310 GRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTY 369

Query: 544 STFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADA 586
           S+ +  LCR      A +LL     RG   D       VIL  +L D 
Sbjct: 370 SSVIYGLCRSNRLDEACRLLLYVKSRGCPPD-------VILYSTLIDG 410



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 159/392 (40%), Gaps = 31/392 (7%)

Query: 50  SLVARVINPYLLTHHSLALGFFN-------W--------ASQQPNFTHSPLSYHSILKSL 94
           S+ AR  +P ++T+  L  G          W        A   PN     ++Y+S+L  L
Sbjct: 216 SMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL----VTYNSLLHGL 271

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV--KFNCEDI 152
             +R+++   ++++ +     T +   Y  +I  L +    + A ++  ++  K    D+
Sbjct: 272 CRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDL 331

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
              I N L+  L     +D ++ +       G++   + +   I+  C + +L +   +L
Sbjct: 332 --MIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLL 389

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
             V+ R        ++   +I G CK  +V+EAF + + +    C  D + Y  + +   
Sbjct: 390 LYVKSR--GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLC 447

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E  ++L +  ++G  P T  Y   I GL     + EA EL E +          
Sbjct: 448 KAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAV 507

Query: 333 VLNALIGSVSSIDP-RSAIVFFN-----FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             N LI  +  ++   SA+V         +   G        S+L   LCK  +  E ++
Sbjct: 508 TYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALD 567

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            ++ +  N    D  +Y++++  L  S  L E
Sbjct: 568 YFQEMIDNGVIPDHITYSILLEGLKKSKDLHE 599



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 15/253 (5%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L +  C+  + D+    +  + + +   ++   ++++  LC + R  +A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            + M+  G+  D   Y +L+    +E  L  A  +  +M   GC  N+ TYN LI    +
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN-----KSVNHDVM 537
             E + A  LF +M     +P   TY +LL+GL +   L+ A  +F      +S + D  
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 538 LARSIL--STFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVE 590
            + +++  S  +  LC+      A +LL     RG S D+    ++ IL+  L    +V 
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV---ITYTILVDGLCKESKVA 243

Query: 591 MAIEHIKWIQESS 603
            A E ++ + ++ 
Sbjct: 244 AAWEVLREMLDAG 256



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C  ++ TY  L+  F   GEI+ A R F  M  K + P+    + L++GLC+      A 
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD 585
             F       ++    I +  +  L +      A  +L  +  D G  + +V+   SL D
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEM-RDHG-CEPNVVTYNSLID 122

Query: 586 A--------REVEMAIEHIKWIQESSPTML 607
                    R  E+  EH+K + E SP+M+
Sbjct: 123 GLCKNNEPDRAQEL-FEHMKSV-ECSPSMV 150


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/501 (22%), Positives = 225/501 (44%), Gaps = 21/501 (4%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI 103
           R  L+ S+V  V+   +     L   FF WA +Q  ++H+   Y ++  +L    +    
Sbjct: 100 RGFLTDSVVVAVLGA-VRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRARDA 158

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICNS 159
           + +L+++      +   +   ++    +G    +A      +K    D G        N+
Sbjct: 159 ERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLK----DFGYRPSKVTYNA 214

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+ VL+S G +D   ++  EMS  G        G F    C+  +    L M++    RE
Sbjct: 215 LVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIE----RE 270

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           +  ++ +V+   +I G  +    +EA   L  +R   C P+ + YR +   F     +  
Sbjct: 271 DFKLD-TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGW 329

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
            + ++      G  P  + +   +     E+    A +L   + +        V N  IG
Sbjct: 330 CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIG 389

Query: 340 SVSSID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           S+   +  P   ++      +  M+    V     ++N ++ LC   K D+  ++ K + 
Sbjct: 390 SICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMM 449

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
              +  D  +Y+ +++FLC + ++ +A+ + QEMK  G+ PDV  Y  L+++ C+  L+ 
Sbjct: 450 RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIE 509

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+ L+++M + GCS  + TY  LI  + +  ++  A  +FH M++ G  P+  TY +L+
Sbjct: 510 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 569

Query: 513 EGLCQETNLQAAFEVFNKSVN 533
           +GLC+  N+  AFEV+ K + 
Sbjct: 570 DGLCKAGNISKAFEVYAKLIG 590



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 192/456 (42%), Gaps = 25/456 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++L      +Q+     ++  +       + S++  ++ S    K+   A+ + N 
Sbjct: 312 VTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 371

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +       G  + N  +        L S   +D A K++ EM       + +    F   
Sbjct: 372 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 431

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+ ++    +  +     +I   C   +VE+AF +  E+++    
Sbjct: 432 LCGVGKFDKAFQLIKEMMRK--GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 489

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + + + + ++ R +G +P    Y   I   +  +++ +A ++
Sbjct: 490 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 549

Query: 319 GEVIVSGKFTIDDDVLNALI------GSVS-----------SIDPRSAIVFFNFMIEKGR 361
              +V      +D    AL+      G++S           + D   +  +F        
Sbjct: 550 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 609

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T   L   LCK +K D   E+   + ++    +   Y+ ++   C +G++  A  
Sbjct: 610 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 669

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M + G  P V  Y SL++   ++  L  A K+  QM    C+ N+ TY  +I    
Sbjct: 670 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 729

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            +GE E AL+L   M EKG +P+  TYT+L++GL Q
Sbjct: 730 RIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQ 765


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/574 (25%), Positives = 257/574 (44%), Gaps = 28/574 (4%)

Query: 46  SLSPSLVARVINPYLLTHHSL-ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           +L P  VA VI      +  L AL  FN    +  F H+  +Y  +++ L L  +  A++
Sbjct: 4   ALQPKHVAAVIR---YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAME 60

Query: 105 SVLKQVKVNKITLDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--C 157
            VL +++ N   +DS     VY  I+    +    Q+A +VF  + F +CE   P +   
Sbjct: 61  DVLAEMRKN---VDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCE---PSVQSY 114

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++ +L   GY   A K++  M   G+        + +  FC   +    L +L+ +  
Sbjct: 115 NAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPG 174

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +       S  AV  I GF K     EA+ + DE+  +   PD + +  +       G+V
Sbjct: 175 QGCEFNAVSYCAV--ISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E +  K  K GV P    +  FI GL  +  I EA  L E IVS   T D    N L
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A  + + M+  G  P   T + +    CK        ++ +      +
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF 352

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +Y+ +++ LC  G +  A  V  E   KG    +  YN+L++   ++ L+  A +
Sbjct: 353 IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ 412

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   M   GCS ++ TYN++++   ++G +  A  + ++ + KG  PD  T+ +L++G C
Sbjct: 413 LMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYC 472

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC--RRGHFLVAT---KLLRGLSSDLG 571
           ++ N+  A E+ +  ++H +       +T +  LC  R+   +V T    L +G + ++ 
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI- 531

Query: 572 HSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
              ++ IL++S    R+V  A+E  K ++    T
Sbjct: 532 --ITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 190/424 (44%), Gaps = 6/424 (1%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FDEM  +G+    + F   I   C+   + +   +  +V KR   +        + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR--GVCPNLFTFNIF 257

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I G C+   ++EA ++L+ +      PD I+Y  +   F     + E E  L K    GV
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV 317

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
            P    Y   I G      +  A ++    +   F  D+   ++LI G  +  D   A+ 
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F   +EKG   ++   + L K L K+    + +++ K +  +    D+ +YN++V+ LC
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLC 437

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G L +A G++ +   KG  PD+  +N+L++  C++  +  A ++ D M + G + ++ 
Sbjct: 438 KMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVI 497

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TYN L++   +  +++  +  F  MLEKG  P+  TY  L+E  C++  +  A E+F + 
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSLADARE 588
               +      L T +  LC  G    A +L   +  +   S S     I++ +  +   
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLN 617

Query: 589 VEMA 592
           V MA
Sbjct: 618 VSMA 621



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 116/525 (22%), Positives = 209/525 (39%), Gaps = 47/525 (8%)

Query: 88  HSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H+I +KS  ++ +  A   +L  +       ++  Y  +I    +     +A+ +F+E+ 
Sbjct: 149 HTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEML 208

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              + I P+I   N L+ VL   G +  + K+F ++  RGV  +   F +FI   C    
Sbjct: 209 K--QGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + +   +L+ +       +   VI+   +I GFCK  ++ EA   L ++     +P+   
Sbjct: 267 IDEAARLLESIVSEG---LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   F   G +   + +L+     G  P    Y   I GL  +  +  A  +    +
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 324 SGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F     + N L+  +S       A+     M+E G  P + T + +   LCK     
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   +     A     D+ ++N ++   C    + +A  ++  M   G+ PDV  YN+L+
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+   L      +  M   GC+ N+ TYNILI  F +  ++  A+ LF  M  +G+ 
Sbjct: 504 NGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563

Query: 503 PDATTYTSLLEGLC------------------------------------QETNLQAAFE 526
           PD  T  +L+ GLC                                    ++ N+  A +
Sbjct: 564 PDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEK 623

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHF-LVATKLLRGLSSDL 570
           +F+K    D           + S C+ G+  L  T LL  +S  L
Sbjct: 624 LFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGL 668



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 167/382 (43%), Gaps = 4/382 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++      G + NA K+  +   +G       +   I   C +  + + +++  E   
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM- 383

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E    +  ++   ++ G  K   V +A +++ ++    C PD   Y +V      MG +
Sbjct: 384 -EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L      G  P    +   I G   +R + +A E+ + ++S   T D    N L
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 338 IGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           +  +        +V  F  M+EKG  P + T + L ++ CK  K  E +E++K +     
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAK 455
             D+ +   ++  LC++G L +AY +   ++++       + +N ++ A C +  +  A+
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAE 622

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL+ +M  S C+ +  TY ++I  + + G I+ A       + KG+ P  TT   +L  L
Sbjct: 623 KLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCL 682

Query: 516 CQETNLQAAFEVFNKSVNHDVM 537
           C    L  A  + N  V + ++
Sbjct: 683 CVTHRLSEAVVIINLMVQNGIV 704



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 201/492 (40%), Gaps = 57/492 (11%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           D +LKQ     I  D   +  +I  L +  N Q++  +F++V      + P +   N  +
Sbjct: 205 DEMLKQ----GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMK--RGVCPNLFTFNIFI 258

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G ID A ++ + +   G+    I +   I  FC+++KL +    L       + 
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL-------HK 311

Query: 222 MINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY------------ 264
           M+N  V         II+GFCK   ++ A K+L +   +   PD   Y            
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 265 --RIVAEEFKLMGSVFEREVVL---------------------KKKRKLGVAPRTNDYRE 301
             R +A  ++ M   F+  ++L                     K   + G +P    Y  
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            + GL     + +A  +    ++     D    N LI G     +   AI   + M+  G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + L   LCK  K D +V+ +K +       ++ +YN+++   C   ++ EA 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISK 479
            + +EMK +GL PD+    +L+   C    L  A +L+  +      S +   +NI+I+ 
Sbjct: 552 ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINA 611

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F E   +  A +LFH M     APD  TY  +++  C+  N+  A     ++++  ++ +
Sbjct: 612 FCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671

Query: 540 RSILSTFMISLC 551
            +     +  LC
Sbjct: 672 FTTCGKVLNCLC 683


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 140/609 (22%), Positives = 268/609 (44%), Gaps = 57/609 (9%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +L P  VA V+   + T    AL  FN A  +  F H+  +Y  I++ L    +   ++ 
Sbjct: 4   TLLPKHVAAVVK--IQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEK 61

Query: 106 VLKQVK--VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEICNSLLA 162
           +L +++  VN   L+ +    +     +GK  Q+A   F  + F NC D      N+++ 
Sbjct: 62  LLSEMRENVNNALLEGAYIEAMKNYGRKGK-VQEAVDTFERMDFYNC-DPSVHSHNAIMN 119

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           +L   GY + A K++  M  RGV+     + + I  FC+ A+    L +L  +   E   
Sbjct: 120 ILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMP--ELGC 177

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            + +V    ++ G       + A ++ DE+  R   PD +A+  +       G VFE E 
Sbjct: 178 DSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESER 237

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVE---------RRICEAKELGEVIVSGKFTIDDDV 333
           +L K  K GV P    +  F+ GL  E          R+ EA+E    +V+G F  DD  
Sbjct: 238 LLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLT 297

Query: 334 LNALI------------------------------------GSVSSIDPRSAIVFFNFMI 357
            N++I                                    G     DP  A+  F   +
Sbjct: 298 YNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGL 357

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            KG  P++   + L K L ++      +++   ++ N    ++ +YN++++ LC  G + 
Sbjct: 358 GKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVS 417

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  ++ +   KG  PD+  YN+L++  C++  L  A ++ ++M++ G + ++ TYN L+
Sbjct: 418 DASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLL 477

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +   + G+ E  + +F  M EKG  P+  TY  +++ LC+   +  A ++  +  +  + 
Sbjct: 478 NGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLK 537

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS--DLGHSD-SHVILLKSLADAREVEMAIE 594
                  T     C+ G    A +L R +    D+ H+  ++ I++ + ++   + MA++
Sbjct: 538 PDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMK 597

Query: 595 HIKWIQESS 603
               ++ S 
Sbjct: 598 LFSVMKNSG 606



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 196/455 (43%), Gaps = 48/455 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           ++  Y  ++  L        A  +F+E+   C  + P++   N L+ VL   G +  + +
Sbjct: 180 NAVAYCTVVAGLYDSGEHDHARELFDEMLARC--LCPDVVAFNKLVHVLCKKGLVFESER 237

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL--SMLDEVRKRENSMINGS-----VI 228
           +  ++  RGV  +   F +F+   C    L + +  S + E  +    M+NG      + 
Sbjct: 238 LLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLT 297

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              II G+CK   V++A +VL +   +  KPD   Y  +   F   G       V K   
Sbjct: 298 YNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGL 357

Query: 289 KLGVAPRTNDYREFILGLIVERRICEA----KELGE-----------VIVSG-------- 325
             G+ P    Y   I GL  +  I  A     E+ E           ++++G        
Sbjct: 358 GKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVS 417

Query: 326 --KFTIDDDV----------LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
                +DD +           N LI G    +   SA    N M  +G  P + T + L 
Sbjct: 418 DASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLL 477

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LCK  KS+E++E++K +       ++ +YN++V  LC + ++ EA  ++ EMK KGL 
Sbjct: 478 NGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLK 537

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALR 491
           PDV  + +L    C+   +  A +L+ +M           TYNI++S FSE   +  A++
Sbjct: 538 PDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMK 597

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           LF  M   G  PD  TY  +++G C+  N+   ++
Sbjct: 598 LFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYK 632



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 49/406 (12%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    L+Y+SI+        +   + VLK         D   Y  +I    +  +  +A 
Sbjct: 291 FEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAM 350

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +VF +     + + P I   N+L+  L+  G I  AL++ +EM+  G   +   + + I 
Sbjct: 351 AVFKDGLG--KGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVIN 408

Query: 198 KFCENAKLGQVLSMLDEVRKRE--------NSMING------------------------ 225
             C+   +     ++D+   +         N++I+G                        
Sbjct: 409 GLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTP 468

Query: 226 SVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            VI    +++G CK  + EE  ++   +  + C P+ I Y I+ +       V E   +L
Sbjct: 469 DVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLL 528

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI--DDDVLNALIGSVS 342
            + +  G+ P    +     G      I  A +L   +   ++ +       N ++ + S
Sbjct: 529 GEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM-EKQYDVCHTTATYNIIVSAFS 587

Query: 343 -SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN---DYFT 398
             ++   A+  F+ M   G  P   T   +    CK      + + YK L  N    +  
Sbjct: 588 EQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMG---NITQGYKFLLENMEKRFIP 644

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            + ++  +++ LC   ++ EA G+I  M +KG+ P+    N++ EA
Sbjct: 645 SLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPET--VNTIFEA 688


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/574 (25%), Positives = 257/574 (44%), Gaps = 28/574 (4%)

Query: 46  SLSPSLVARVINPYLLTHHSL-ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           +L P  VA VI      +  L AL  FN    +  F H+  +Y  +++ L L  +  A++
Sbjct: 4   ALQPKHVAAVIR---YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAME 60

Query: 105 SVLKQVKVNKITLDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--C 157
            VL +++ N   +DS     VY  I+    +    Q+A +VF  + F +CE   P +   
Sbjct: 61  DVLAEMRKN---VDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCE---PSVQSY 114

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++ +L   GY   A K++  M   G+        + +  FC   +    L +L+ +  
Sbjct: 115 NAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPG 174

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +       S  AV  I GF K     EA+ + DE+  +   PD + +  +       G+V
Sbjct: 175 QGCEFNAVSYCAV--ISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E +  K  K GV P    +  FI GL  +  I EA  L E IVS   T D    N L
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A  + + M+  G  P   T + +    CK        ++ +      +
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF 352

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +Y+ +++ LC  G +  A  V  E   KG    +  YN+L++   ++ L+  A +
Sbjct: 353 IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ 412

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   M   GCS ++ TYN++++   ++G +  A  + ++ + KG  PD  T+ +L++G C
Sbjct: 413 LMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYC 472

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC--RRGHFLVAT---KLLRGLSSDLG 571
           ++ N+  A E+ +  ++H +       +T +  LC  R+   +V T    L +G + ++ 
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI- 531

Query: 572 HSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
              ++ IL++S    R+V  A+E  K ++    T
Sbjct: 532 --ITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 3/408 (0%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FDEM  +G+    + F   I   C+   + +   +  +V KR   +        + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR--GVCPNLFTFNIF 257

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I G C+   ++EA ++L+ +      PD I+Y  +   F     + E E  L K    GV
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV 317

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
            P    Y   I G      +  A ++    +   F  D+   ++LI G  +  D   A+ 
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F   +EKG   ++   + L K L K+    + +++ K +  +    D+ +YN++V+ LC
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLC 437

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G L +A G++ +   KG  PD+  +N+L++  C++  +  A ++ D M + G + ++ 
Sbjct: 438 KMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVI 497

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TYN L++   +  +++  +  F  MLEKG  P+  TY  L+E  C++  +  A E+F + 
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579
               +      L T +  LC  G    A +L   +  +   S S  I 
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIF 605



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 116/525 (22%), Positives = 208/525 (39%), Gaps = 47/525 (8%)

Query: 88  HSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H+I +KS  ++ +  A   +L  +       ++  Y  +I    +     +A+ +F+E+ 
Sbjct: 149 HTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEML 208

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              + I P+I   N L+ VL   G +  + K+F ++  RGV  +   F +FI   C    
Sbjct: 209 K--QGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + +   +L+ +    +  +   VI+   +I GFCK  ++ EA   L ++     +P+   
Sbjct: 267 IDEAARLLESIV---SEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   F   G +   + +L+     G  P    Y   I GL  +  +  A  +    +
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 324 SGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F     + N L+  +S       A+     M+E G  P + T + +   LCK     
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   +     A     D+ ++N ++   C    + +A  ++  M   G+ PDV  YN+L+
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+   L      +  M   GC+ N+ TYNILI  F +  ++  A+ LF  M  +G+ 
Sbjct: 504 NGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563

Query: 503 PDATTYTSLLEGLCQETNLQAAF------------------------------------E 526
           PD  T  +L+ GLC    L  A+                                    +
Sbjct: 564 PDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEK 623

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHF-LVATKLLRGLSSDL 570
           +F+K    D           + S C+ G+  L  T LL  +S  L
Sbjct: 624 LFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGL 668



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 167/382 (43%), Gaps = 4/382 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++      G + NA K+  +   +G       +   I   C +  + + +++  E   
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM- 383

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E    +  ++   ++ G  K   V +A +++ ++    C PD   Y +V      MG +
Sbjct: 384 -EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L      G  P    +   I G   +R + +A E+ + ++S   T D    N L
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 338 IGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           +  +        +V  F  M+EKG  P + T + L ++ CK  K  E +E++K +     
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAK 455
             D+ +   ++  LC++G L +AY +   ++++       + +N ++ A C +  +  A+
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAE 622

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL+ +M  S C+ +  TY ++I  + + G I+ A       + KG+ P  TT   +L  L
Sbjct: 623 KLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCL 682

Query: 516 CQETNLQAAFEVFNKSVNHDVM 537
           C    L  A  + N  V + ++
Sbjct: 683 CVTHRLSEAVVIINLMVQNGIV 704



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/492 (22%), Positives = 200/492 (40%), Gaps = 57/492 (11%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           D +LKQ     I  D   +  +I  L +  N Q++  +F++V      + P +   N  +
Sbjct: 205 DEMLKQ----GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMK--RGVCPNLFTFNIFI 258

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G ID A ++ + +   G+    I +   I  FC+++KL +    L       + 
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL-------HK 311

Query: 222 MINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY------------ 264
           M+N  V         II+GFCK   ++ A K+L +   +   PD   Y            
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 265 --RIVAEEFKLMGSVFEREVVL---------------------KKKRKLGVAPRTNDYRE 301
             R +A  ++ M   F+  ++L                     K   + G +P    Y  
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            + GL     + +A  +    ++     D    N LI G     +   AI   + M+  G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + L   LCK  K D +V+ +K +       ++ +YN+++   C   ++ EA 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISK 479
            + +EMK +GL PD+    +L+   C    L  A +L+  +      S +   +NI+I+ 
Sbjct: 552 ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINA 611

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F     +  A +LFH M     APD  TY  +++  C+  N+  A     ++++  ++ +
Sbjct: 612 FCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671

Query: 540 RSILSTFMISLC 551
            +     +  LC
Sbjct: 672 FTTCGKVLNCLC 683


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 137/606 (22%), Positives = 260/606 (42%), Gaps = 65/606 (10%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGF--FNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           + L+P L + ++N  +       LGF  F W +++ +F  S ++++ ++  L+     + 
Sbjct: 56  EKLAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLAKDDGFDT 114

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI--CNS 159
              +L+++K + I +    +  +I +  +    +KA   F ++K F C+   P++   NS
Sbjct: 115 YWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCK---PDVFTYNS 171

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L V+        AL ++++M       +   F + +   C+N K    L M DE+ ++ 
Sbjct: 172 ILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK- 230

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   ++I  +I+ G C+ KR ++  ++L+ +++  C PD I    + + F  +G + E
Sbjct: 231 -GIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDE 289

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +L+   K G       Y   I GL   +R  E +E    +       D  +   LI 
Sbjct: 290 AFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIR 349

Query: 340 S---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
               V  +D   A+   N M ++G  P     + L K  C     D+   +   +S ND 
Sbjct: 350 GFCEVGMVD--YALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDC 407

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK- 455
           F    +Y +++  +C +G L EA  +  +M+  G  P +  +N+L++  C+   L  A+ 
Sbjct: 408 FPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARH 467

Query: 456 -----------------------------------------------KLWDQMFASGCSG 468
                                                          KL  Q+  SG   
Sbjct: 468 LFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVP 527

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TYN+LI+ F +   I GA +LF  +  KG +PD+ TY +L++G  +    + AF V 
Sbjct: 528 DIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVL 587

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-LRGLSSDLGHSDSHVILLKSLADAR 587
           ++ V +    + ++    M   CR+G   VA  L L+ L S     D  + L +   +  
Sbjct: 588 DQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKG 647

Query: 588 EVEMAI 593
           E+E A+
Sbjct: 648 ELEKAV 653



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 175/403 (43%), Gaps = 42/403 (10%)

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E  K  N  I     +VLI   + K    E+A +   +++   CKPD   Y        +
Sbjct: 120 EELKNSNIQIPPPTFSVLI-AAYAKSGMAEKAVESFGKMKDFGCKPDVFTYN------SI 172

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +  + ++EV                   F+L L V  ++ +   L        F I   +
Sbjct: 173 LHVMVQKEV-------------------FLLALAVYNQMLK---LNYNPNRATFVI---L 207

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L  +  + D   A+  F+ M +KG  P     + +   LC+  ++D++  +   +  
Sbjct: 208 LNGLCKNGKTDD---ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV 264

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D  + N ++   C  G++ EA+ ++Q  +++G    +  Y+SL++   R      
Sbjct: 265 SGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDE 324

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
            ++   +MF +G   ++  Y ILI  F EVG ++ AL + ++M ++G++PD   Y +L++
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIK 384

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
           G C    L  A  +  +   +D        +  +  +CR G    A ++   +  +LG S
Sbjct: 385 GFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM-ENLGCS 443

Query: 574 DSHVI---LLKSLADAREVEMAIEHIKWIQE--SSPTMLQEIS 611
            S +    L+  L  A E+E A  H+ +  E   +P++   +S
Sbjct: 444 PSIMTFNALIDGLCKAGELEEA-RHLFYKMEIGKNPSLFLRLS 485


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 195/434 (44%), Gaps = 9/434 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  +I  L +     +A  +F  +K    +  P +   N+LL  L   G ++ A+ +F E
Sbjct: 13  YNSLIDGLCKNNEPDRAQELFEHMKS--VECSPSMVTYNTLLDGLFRTGKLERAMALFQE 70

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  R      I F + +   C   + G++ + L+  RK ++      +   ++I G CK 
Sbjct: 71  MLDRR-SHDVISFNILVTGLC---RAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKA 126

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            RV +A ++L+ ++ R C PD I Y I+ +       V     VL++    G  P    Y
Sbjct: 127 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTY 186

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              + GL   RR+ +A  L   +     T +      LI  +  +   + A      MI+
Sbjct: 187 NSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMID 246

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P L   + L   LCK ++ DE + + +   +     D+ +Y+ ++  LC S RL E
Sbjct: 247 KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDE 306

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++  +K +G  PDV  Y++L++  C+   +  A  L++ M   GC  ++ TY+ LI 
Sbjct: 307 ACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLID 366

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              + G ++ A  L   M+  G  P   TY SL++GLC   +L  A E+  +    +   
Sbjct: 367 GLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 426

Query: 539 ARSILSTFMISLCR 552
           +    +  +  +CR
Sbjct: 427 SAVTYNILIHGMCR 440



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 225/487 (46%), Gaps = 35/487 (7%)

Query: 58  PYLLTHHSLALGFFNWASQQPN-----FTH------SP--LSYHSILKSLSLSRQINAID 104
           P ++T++SL  G     + +P+     F H      SP  ++Y+++L  L  + ++    
Sbjct: 8   PNVVTYNSLIDGL--CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           ++ +++ +++ + D   +  ++  L +    + A   F ++   C    P +   + L+ 
Sbjct: 66  ALFQEM-LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCS---PNVITYSVLID 121

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L     +  A+++ + M  RG     I + + +   C+ +K+     +L E       M
Sbjct: 122 GLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE-------M 174

Query: 223 INGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           ++   +  L+     +HG C+ +RV +A  ++ ++  R C P+ + Y  + +    +G V
Sbjct: 175 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 234

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L      G  P    Y   I GL    ++ E+  L    VSG    D    +++
Sbjct: 235 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 294

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   S     A     ++  +G  P +   S L   LCK  K DE  ++Y+V++ +  
Sbjct: 295 IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGC 354

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y+ ++  LC +GR+ EA+ ++  M R G  P    YNSL++  C  + L  A +
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIE-GALRLFHNMLEKGVAPDATTYTSLLEGL 515
           L ++M  S C+ +  TYNILI     +  ++  AL  F  M++ GV PD  TY+ LLEGL
Sbjct: 415 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGL 474

Query: 516 CQETNLQ 522
            +  +L 
Sbjct: 475 KKSKDLH 481



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 48/360 (13%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G CK    + A ++ + ++  EC P  + Y  + +     G   ER + L ++    
Sbjct: 16  LIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK-LERAMALFQEM--- 71

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           +  R++D   F    I+   +C A ++                             +A+ 
Sbjct: 72  LDRRSHDVISFN---ILVTGLCRAGKI----------------------------ETALE 100

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF  M ++   P + T S L   LCK N+  + VE+ + + A     D+ +Y ++V  LC
Sbjct: 101 FFRKMDDRCS-PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC 159

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
              ++  A+ V++EM   G  P++  YNSL+   CR   +  A  L   M   GC+ N+ 
Sbjct: 160 KESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVV 219

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY  LI    +VG ++ A  +  +M++KG  PD   Y  L+ GLC+   +  +  +  ++
Sbjct: 220 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 279

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADA 586
           V+  +       S+ +  LCR      A +LL     RG   D       VIL  +L D 
Sbjct: 280 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD-------VILYSTLIDG 332


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 184/379 (48%), Gaps = 7/379 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL  LA  G +    ++F  M    V  + + +G+ +   C+  ++G  LS+LD +  
Sbjct: 141 NTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSG 200

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE---CKPDFIAYRIVAEEFKLM 274
            E+ +    V+   I+ G CK  R+++A K ++E R+R    C P+ + Y  +A  F   
Sbjct: 201 PESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEE-RMRSVHGCAPNTVTYNCLAHAFCRA 259

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL--GEVIVSGKFTIDDD 332
           G+V     ++ K  K  V P        + GL    R+  A E    +  V  +   +  
Sbjct: 260 GNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAV 319

Query: 333 VLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             + L+G+ + + +   A+  F+ M+++G  P       +   L +  + D+   +   +
Sbjct: 320 TYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSM 379

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
               +  D ++YN+++   C   RL EAY ++ EMK  GL PDV  YN+L+   C+    
Sbjct: 380 KKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDF 439

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
               +L  +M   GC  ++ T+  LI  + +VG+I+ ALR+F +M E G+ P+   Y +L
Sbjct: 440 LAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTL 499

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++ LC+  +   A E+F++
Sbjct: 500 IDFLCKSRDTSLAIELFDE 518



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/437 (20%), Positives = 172/437 (39%), Gaps = 9/437 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++++L +L+ +  +  +  +   ++   +  +   Y  ++  L +      A SV + +
Sbjct: 139 AFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGM 198

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKFCE 201
                D+ P++   N+++  L   G +  A+K  +E   S  G   +T+ +      FC 
Sbjct: 199 SGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCR 258

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECKP 259
              +G    ++ ++ K    +   +V    I+ G C   RV  A +   E R    E + 
Sbjct: 259 AGNVGMACELVAKMEKER--VTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARG 316

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + Y  +   F    +V     +  +    G +P    Y   I GL    R+ +A  + 
Sbjct: 317 NAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMA 376

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             +    F +D    N LIG          A      M E G  P + T + L   LCK 
Sbjct: 377 TSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKA 436

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                + E+   +        + ++  ++   C  G++ EA  + + M   G+ P+   Y
Sbjct: 437 GDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIY 496

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L++  C+      A +L+D+M       N+ T+N L+    +    E A  L   M E
Sbjct: 497 NTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMRE 556

Query: 499 KGVAPDATTYTSLLEGL 515
               PD  T   L+E L
Sbjct: 557 GRCTPDYVTIDILMEWL 573



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 8/206 (3%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEK----GRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +L+AL+  + S  P S+     F+ +        P  S  + L   L +      + +++
Sbjct: 101 ILSALLYKILSRSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLF 160

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD--PDVSFYNSLMEACC 446
             +       ++ +Y ++V  LC +GR+ +A  V+  M     D  PDV   N++++  C
Sbjct: 161 ASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLC 220

Query: 447 REDLLRPAKKLWDQMFAS--GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           +   L+ A K  ++   S  GC+ N  TYN L   F   G +  A  L   M ++ V P+
Sbjct: 221 KTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPN 280

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNK 530
           A T  +++ GLC    + AA E F +
Sbjct: 281 AVTLNTIVGGLCWVGRVGAALEFFRE 306



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+ L D + A     +   +N L+   ++ G++ G  +LF +M +  V P+  TY  L++
Sbjct: 121 ARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVK 180

Query: 514 GLCQETNLQAAFEVFN--KSVNHDVMLARSILSTFMISLCRRGHFLVATKL----LRGLS 567
           GLC+   +  A  V +       DV     +L+  +  LC+ G    A K     +R + 
Sbjct: 181 GLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVH 240

Query: 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
               ++ ++  L  +   A  V MA E +  +++
Sbjct: 241 GCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEK 274



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD S +N+L++A  +   L    +L+  M  +    N+ TY IL+    + G +  AL +
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194

Query: 493 FHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN--HDVMLARSILSTFMI 548
              M   E  V PD     ++++GLC+   LQ A +   + +   H         +    
Sbjct: 195 LDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAH 254

Query: 549 SLCRRGHFLVATKLL 563
           + CR G+  +A +L+
Sbjct: 255 AFCRAGNVGMACELV 269


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 196/403 (48%), Gaps = 21/403 (5%)

Query: 136 QKAFSVFNEVKFNCEDIGPEIC------NSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           + AF VF E      ++G  +C      N +L +L   G +  A  +  +M  RG     
Sbjct: 234 RTAFRVFREY----SEVG--VCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDV 287

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAF 246
           + + V +  +C+  +LG+VL +++E++++    N     S+I+ L     CK  RV EA 
Sbjct: 288 VSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFL-----CKTGRVVEAE 342

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           +VL  ++ +   PD + Y  +   F   G+V     +  + ++  + P    Y   I GL
Sbjct: 343 QVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGL 402

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
               ++ EA++L   ++S     D+    ALI G   + + + A    N M+EKG  P +
Sbjct: 403 CQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNV 462

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L   LCK  + D   E+   +S      ++ +YN +++ LC  G + +A  +++E
Sbjct: 463 VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEE 522

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G  PD   Y ++M+A C+   +  A +L   M   G    + T+N+L++ F   G 
Sbjct: 523 MDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGM 582

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +E   RL   ML+KG+ P+ATT+ SL++  C   N++A  E++
Sbjct: 583 LEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIY 625



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 208/446 (46%), Gaps = 18/446 (4%)

Query: 157 CNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           CN  LA L++  DG I  A ++F E S  GV ++T+ + + +   C+  K+ +  S+L +
Sbjct: 219 CNLFLARLSNSFDG-IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQ 277

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +  R N  +   V   +I+ G+C+ +++ +  K+++EL+ +  KP+   Y  +       
Sbjct: 278 MEFRGN--VPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKT 335

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILG------LIVERRICEAKELGEVIVSGKFT 328
           G V E E VL+  +   + P    Y   I G      + VE ++ +  E+    +   F 
Sbjct: 336 GRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFD--EMKRKKIVPDFV 393

Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
               +++ L  +   ++ R     F+ M+ KG  P   T + L    CK  +  E   ++
Sbjct: 394 TYTSMIHGLCQAGKVVEARK---LFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLH 450

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +       ++ +Y  +V  LC  G +  A  ++ EM  KGL P+V  YN+L+   C+ 
Sbjct: 451 NQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKV 510

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A KL ++M  +G   +  TY  ++  + ++GE+  A  L   ML+KG+ P   T+
Sbjct: 511 GNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTF 570

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             L+ G C    L+    +    ++  +M   +  ++ M   C R +     ++ +G+ +
Sbjct: 571 NVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHA 630

Query: 569 D--LGHSDSHVILLKSLADAREVEMA 592
              +  ++++ IL+K    AR ++ A
Sbjct: 631 QGVVPDTNTYNILIKGHCKARNMKEA 656



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 227/519 (43%), Gaps = 48/519 (9%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           + L L FF+WA          L     L+SL +  QI      L+            V+ 
Sbjct: 107 YKLVLDFFDWAR---------LRRDPSLESLCIVVQIAVASKDLRMAH-------RLVFE 150

Query: 124 FI-IPSLIQGKNTQKAFSVFNE-VKFNCEDIG--PEICNSLLAVLASDGYIDNALKMFDE 179
           F   P L  G     +F  F E + +  +D G  P + +    VL   G +  A K+FD+
Sbjct: 151 FWEKPHLDVGN----SFDRFTERLIYTYKDWGAHPLVFDVFFQVLVEAGLLLEAGKLFDK 206

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-----RENSMIN---GSVIAVL 231
           + + GV  S     +F         L ++ +  D +R      RE S +     +V   +
Sbjct: 207 LLNYGVLVSVDSCNLF---------LARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNI 257

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKR 288
           I+H  C+  +V+EA  +L ++  R   PD ++Y ++ + +   + +G V +    L++K 
Sbjct: 258 ILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRK- 316

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
             G+ P    Y   I  L    R+ EA+++  V+ + +   D+ V   LI G   S +  
Sbjct: 317 --GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVS 374

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                F+ M  K  VP   T +++   LC+  K  E  +++  + +     D  +Y  ++
Sbjct: 375 VEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALI 434

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C +G ++EA+ +  +M  KGL P+V  Y +L++  C+   +  A +L  +M   G  
Sbjct: 435 DGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQ 494

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ TYN LI+   +VG IE A++L   M   G  PD  TYT++++  C+   +  A E+
Sbjct: 495 PNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHEL 554

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
               ++  +       +  M   C  G      +L++ +
Sbjct: 555 LRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 195/428 (45%), Gaps = 9/428 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q+     +  +Y+SI+  L  + ++   + VL+ +K  +I  D+ VY  +I    +  N 
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 136 QKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              + +F+E+K   + I P+     S++  L   G +  A K+F EM  +G++   + + 
Sbjct: 374 SVEYKLFDEMKR--KKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYT 431

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I  +C+  ++ +  S+ +++   E  +    V    ++ G CK   V+ A ++L E+ 
Sbjct: 432 ALIDGYCKAGEMKEAFSLHNQMV--EKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMS 489

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRI 312
            +  +P+   Y  +      +G++ E+ V L ++  L G  P T  Y   +        +
Sbjct: 490 EKGLQPNVCTYNALINGLCKVGNI-EQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A EL  +++           N L+ G   S           +M++KG +P  +T ++L
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            K  C RN     +E+YK + A     D  +YN+++   C +  ++EA+ + +EM  KG 
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
               + YNSL++   +      A+KL+++M   G     + Y+I +    E G  E  L 
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLE 728

Query: 492 LFHNMLEK 499
           L    +EK
Sbjct: 729 LCDEAIEK 736



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 203/464 (43%), Gaps = 3/464 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+ IL  L    ++    S+L Q++      D   Y  I+    Q +   K   +  E
Sbjct: 253 VSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEE 312

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++           NS+++ L   G +  A ++   M ++ +    + +   I  F ++  
Sbjct: 313 LQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGN 372

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +     + DE+++++  ++   V    +IHG C+  +V EA K+  E+  +  KPD + Y
Sbjct: 373 VSVEYKLFDEMKRKK--IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTY 430

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + +   G + E   +  +  + G+ P    Y   + GL     +  A EL   +  
Sbjct: 431 TALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSE 490

Query: 325 GKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +    NALI  +  + +   A+     M   G  P   T + +    CK  +  +
Sbjct: 491 KGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAK 550

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             E+ +++        + ++NV+++  C SG L +   +I+ M  KG+ P+ + +NSLM+
Sbjct: 551 AHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMK 610

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C  + +R   +++  M A G   +  TYNILI    +   ++ A  L   M+EKG + 
Sbjct: 611 QYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSL 670

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A +Y SL++G  +    + A ++F +   H  +  + I   F+
Sbjct: 671 TAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 4/239 (1%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P   T +++   LCK  +  E  +V +V+     F D   Y  ++S    SG +  
Sbjct: 316 KGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSV 375

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
            Y +  EMKRK + PD   Y S++   C+   +  A+KL+ +M + G   +  TY  LI 
Sbjct: 376 EYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + + GE++ A  L + M+EKG+ P+  TYT+L++GLC+   +  A E+ ++     +  
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP 495

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA--REVEMAIEH 595
                +  +  LC+ G+   A KL+  +  DL       I   ++ DA  +  EMA  H
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEM--DLAGFFPDTITYTTIMDAYCKMGEMAKAH 552



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/451 (19%), Positives = 188/451 (41%), Gaps = 7/451 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  I+       Q+  +  ++++++   +  +   Y  II  L +     +A  V   
Sbjct: 288 VSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRV 347

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K   + I P+  +  +L++     G +    K+FDEM  + +    + +   I   C+ 
Sbjct: 348 MK--NQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQA 405

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+ +   +  E+  +   +    V    +I G+CK   ++EAF + +++  +   P+ +
Sbjct: 406 GKVVEARKLFSEMLSK--GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVV 463

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +     G V     +L +  + G+ P    Y   I GL     I +A +L E +
Sbjct: 464 TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
               F  D      ++ +   +   + A      M++KG  PT+ T + L    C     
Sbjct: 524 DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGML 583

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           ++   + K +       +  ++N ++   C    +R    + + M  +G+ PD + YN L
Sbjct: 584 EDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNIL 643

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C+   ++ A  L  +M   G S    +YN LI  F +  + E A +LF  M   G 
Sbjct: 644 IKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGF 703

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
             +   Y   ++   +E N +   E+ ++++
Sbjct: 704 IAEKEIYDIFVDVNYEEGNWENTLELCDEAI 734


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 212/493 (43%), Gaps = 30/493 (6%)

Query: 67  ALGFFNWASQQ--PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           AL F+ WA +Q   ++ H    Y+ ++++L+ +++++ IDSVL ++     +L+      
Sbjct: 12  ALFFYRWAGKQNRSSYKHDSRIYNQVVRNLAAAKRLSDIDSVLGEMMDQGCSLEPEAALD 71

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++     G    +A ++FNE++   ++    I N +   LA      +  +M +++  + 
Sbjct: 72  LVVCYANGAMVDRAQAIFNELRHQGQEFPAHIYNVIFGALAKLQRFQDVFRMVEDLMAKN 131

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
             FS       +  FC+   + + +  L  +  +   +   +     +I G CKG R++E
Sbjct: 132 FTFSDSTADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDE 191

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A ++ + +R      D   Y  + E    +G V + E VLK   +    P    Y   I 
Sbjct: 192 ALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVIN 251

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKG--- 360
           G         A  L   +    +  D  V + +IG +        A+V     IE G   
Sbjct: 252 GFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEP 311

Query: 361 ------------RVPTLSTL-SNLSKNLCKRNKSDELVEVY-----------KVLSANDY 396
                       + P  + L S L K LCK  K +   ++            ++L  +  
Sbjct: 312 DEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGC 371

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  Y++++  LC  G   E + V++ M+ +G+ PD   Y   + A CR   L  A +
Sbjct: 372 KPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACR 431

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L + M  +GC  ++ +YN L+      G+ E A RLF  M+E G+ P+  TYT L+  LC
Sbjct: 432 LLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALC 491

Query: 517 QETNLQAAFEVFN 529
               L+ A  +FN
Sbjct: 492 STKKLEGARHLFN 504



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 174/416 (41%), Gaps = 41/416 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQV--KVNKITLDSSVYRFIIPSLIQGKNTQ 136
           NFT S  +  ++++    +  ++     LK +  K  ++ + +  Y  +I  L +G    
Sbjct: 131 NFTFSDSTADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRID 190

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +A  ++  ++ N         N+++  ++  G ++ A K+   M     +     +   I
Sbjct: 191 EALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVI 250

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             FC+       + +L   R +E      +V+   II G CK  + +EA  VL       
Sbjct: 251 NGFCKLGNFKNAVVLLG--RMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAG 308

Query: 257 CKPDFIAYRIVAEEFKLMGS--VFEREV-VLKKKRKLGVAPR-----TNDYREFILGLIV 308
           C+PD + Y  +A+E K   +  ++ R +  L K  K+  A +     TN  RE       
Sbjct: 309 CEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRE------- 361

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI-------VFFNFMIEKGR 361
                      E ++ G     D V+ +++     ID   A+       V    M E+G 
Sbjct: 362 ----------SEQLLGGDGCKPDVVMYSIV-----IDALCAMGMTDEGFVVVKAMEERGV 406

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P     +      C+  + D+   + +++     + D+ SYN ++  LC++G+  EA  
Sbjct: 407 KPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACR 466

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           + Q M   G++P+V  Y  L+ A C    L  A+ L++ M  S C  +++TY  LI
Sbjct: 467 LFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALI 522



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 158/388 (40%), Gaps = 31/388 (7%)

Query: 67  ALGFFNWASQQP-NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           A+ F  W S +      S   Y+ +++ L    +I+    + + ++ N +  D   Y  +
Sbjct: 155 AVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNM 214

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHR 183
           I  + +    ++A  V   ++ +  D  P+  I   ++      G   NA+ +   M   
Sbjct: 215 IECISKLGMVEQAEKVLKTMEES--DCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEA 272

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSML----------DEVR----KRENSMINGSVIA 229
           G     + F   I   C+ +K  + L +L          DEV      +E      +++ 
Sbjct: 273 GYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKCPATNLLY 332

Query: 230 VLIIHGFCKGKRVEEAFKVLDELR--IRE---------CKPDFIAYRIVAEEFKLMGSVF 278
             ++   CK  +VE A ++L++L    RE         CKPD + Y IV +    MG   
Sbjct: 333 SRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTD 392

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E  VV+K   + GV P    Y  F+       R+ +A  L E++V      D    N L+
Sbjct: 393 EGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLL 452

Query: 339 GSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            ++ S      A   F  M+E G  P + T + L + LC   K +    ++  +  +   
Sbjct: 453 FALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCV 512

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQE 425
            DME+Y  ++     +  +REA  ++++
Sbjct: 513 PDMETYKALILGHYQNEGVREARQLLEQ 540



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 20/232 (8%)

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES--YNVMVSFLCTSGRLREAYGVI 423
           ST   L +  CK    D+ V   K +S+      M +  YN ++  LC   R+ EA  + 
Sbjct: 137 STADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLY 196

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           + M+   +  D+  YN+++E   +  ++  A+K+   M  S C  +   Y  +I+ F ++
Sbjct: 197 ELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKL 256

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV------- 536
           G  + A+ L   M E G APDA  +  ++ GLC+ +    A  V   S+           
Sbjct: 257 GNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTY 316

Query: 537 -MLARS--------ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579
             LA+         + S  M  LC+ G    A +LL  L++  G  +S  +L
Sbjct: 317 FKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTN--GSRESEQLL 366


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 233/517 (45%), Gaps = 9/517 (1%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           TH+  S + ++  L     ++   SV  ++    I  D   +  +I  +      + A  
Sbjct: 125 THTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVE 184

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           ++NE+  +  +  P++   N+L+  L + G  + A+ +F +M   G + + + +   I  
Sbjct: 185 LYNEMVRSGHE--PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C++  +   +  L E+  R   +   ++    I+HG C   ++ EA ++   +    CK
Sbjct: 243 LCKDRLVNDAMDFLSEMVGR--GIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK 300

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + Y I+ +       V +    L +    G+ P    Y   + GL    ++ EA  L
Sbjct: 301 PDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRL 360

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +       D    N +I S+        A+ F + M+++G  P   T S +    C 
Sbjct: 361 FKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + DE  +++K +   +   +  +++++V  LC  G + EA  V + M  KG++P++  
Sbjct: 421 LGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYT 480

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN+LM   C    +  A+K+++ M   GC+ +L +YNILI+ +     ++ A  L   M 
Sbjct: 481 YNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMS 540

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            K + P+  TY ++++GLC    L  A E+F K  +  ++      S  +  LC+ GH  
Sbjct: 541 VKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLD 600

Query: 558 VATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMA 592
            A KL + +       D   + IL++ +    ++E+A
Sbjct: 601 EALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVA 637



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 15/457 (3%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H P  +SY++++  L  S   N    V K+++ N    +   Y  II SL + +    A 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
              +E+      I P+    NS++  L   G ++ A ++F  M   G +   + + + I 
Sbjct: 254 DFLSEMV--GRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
              ++  +      L E+   +  +    V    I+HG C   ++ EA ++  ++  + C
Sbjct: 312 SLYKDRLVNDAADFLSEMV--DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGC 369

Query: 258 KPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           KPD +AY  + +     +L+    E    L +    G+ P    Y   + G     ++ E
Sbjct: 370 KPDVVAYNTIIDSLCKDRLVNDAME---FLSEMVDRGIPPNAVTYSTILHGFCNLGQLDE 426

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSK 373
           A +L + +V      +    + L+  +      S A   F  M EKG  P + T + L  
Sbjct: 427 ATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMN 486

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C R K +E  +V++++       D+ SYN++++  C S R+ +A  ++ +M  K L P
Sbjct: 487 GYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTP 546

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +   YN++M+  C    L  A++L+ +M +SG    L TY+IL++   + G ++ AL+LF
Sbjct: 547 NTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLF 606

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +M EK + PD   YT L+EG+     L+ A  +F+K
Sbjct: 607 KSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSK 643



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 337 LIGSVSSIDPRSAIVFF-NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            +GS++ +   S +V+  N M   G   T+ +L+ L   LC+ N  D  V V+  +    
Sbjct: 99  FLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLG 158

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ ++  +++ +C  G+++ A  +  EM R G +PDV  YN+L+   C       A 
Sbjct: 159 IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAV 218

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++ +M  +GC  N+ TYN +I    +   +  A+     M+ +G+ PDA TY S++ GL
Sbjct: 219 HVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278

Query: 516 CQETNLQAAFEVFNK 530
           C    L  A  +F +
Sbjct: 279 CCLGQLNEATRLFKR 293



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 127/276 (46%), Gaps = 21/276 (7%)

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           S   ++DD +  A    ++ ++PR +IV F  F+    ++   ST+  L       N+ D
Sbjct: 69  SNTISVDDAL--ASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLC------NQMD 120

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                + V S N          ++++ LC    +  A  V  +M + G+ PDV  + +L+
Sbjct: 121 LFGVTHTVYSLN----------ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLI 170

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C E  ++ A +L+++M  SG   ++ +YN LI+     G    A+ +F  M + G  
Sbjct: 171 NGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCK 230

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P+  TY ++++ LC++  +  A +  ++ V   +       ++ +  LC  G    AT+L
Sbjct: 231 PNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL 290

Query: 563 LRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHI 596
            + +  +    D  ++ I++ SL   R V  A + +
Sbjct: 291 FKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 214/449 (47%), Gaps = 9/449 (2%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKM 176
           + V++ I+  L        A   F E+   C    P+    N+++  L+    +D+A+++
Sbjct: 10  AGVHKSILRGLCDAGQCSDAVLHFREMSKTCP---PDSVTYNTMINGLSKSDRLDDAIRL 66

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
            +EM   G   +   +   +  FC+  ++   L +L+++  R        V    +I+G 
Sbjct: 67  LEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMR--GCPPDVVSYTTVINGL 124

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  +V+EA +V+D++  R C+P+ I Y  + + F  +G +     +++K  + G  P  
Sbjct: 125 CKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNA 184

Query: 297 NDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFN 354
             Y   + GL   R++  A +L  E+  SG    D    + ++ S V S     A     
Sbjct: 185 ITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVE 244

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ KG  P + T S+L   LCK  K DE   + + ++ +    ++ +YN ++   C  G
Sbjct: 245 AMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 304

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R+ EAY +++EM   G  P+V  Y  L++A C+      A  L + M   G   NL TYN
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            L+  F +  E+E A +L  +M++KG  P+  +Y +++ GLC+ T +     +  + +++
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN 424

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLL 563
           + +      +T + ++C+     +A +L 
Sbjct: 425 NCVPDIVTFNTIIDAMCKTYRVDIAYELF 453



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/591 (21%), Positives = 250/591 (42%), Gaps = 57/591 (9%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y +++        ++    +++++       ++  Y  I+  L  G+   
Sbjct: 146 QPNV----ITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLD 201

Query: 137 KAFSVFNEVKFNCEDIG---PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
            A  +F E+    E+ G   P++   ++++  L   G +D+A ++ + M  +G   + + 
Sbjct: 202 SALQLFKEM----EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   +   C+  KL +  ++L  + +   S     V    II G CK  R++EA+ +L+E
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCS--PNIVTYNTIIDGHCKLGRIDEAYHLLEE 315

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFER----EVVLKKKR------------------- 288
           +    C+P+ + Y ++ + F   G   +     EV+++K                     
Sbjct: 316 MVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE 375

Query: 289 ------------KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                       + G  P    Y   I GL    ++ E   L E ++S     D    N 
Sbjct: 376 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 435

Query: 337 LIGSVSSIDPRSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +I ++     R  I +  FN + E G  P L T ++L   LCK  + D+   + + ++  
Sbjct: 436 IIDAMCKT-YRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 494

Query: 395 DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
              + D+ +YN ++  LC S R+  AY +  +M   GL PD   Y+ ++ + C+   +  
Sbjct: 495 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE 554

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + + M  +G      TY  LI  F + G ++ AL +   +L KG  PD  T++  ++
Sbjct: 555 ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFID 614

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
            L +   L+ A E+    +   ++      +T +   C       A  L   +       
Sbjct: 615 WLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEP 674

Query: 574 D--SHVILLKSLADAREV-EMAIEHIKWIQESSPTMLQEISAELFASLSSS 621
           D  ++  L+  L D +   ++  E  K + ++   +  E+S++L AS+S+S
Sbjct: 675 DNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASVSAS 725



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 16/269 (5%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A++ F  M  K   P   T + +   L K ++ D+ + + + +  N +  ++ SYN ++ 
Sbjct: 29  AVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLH 87

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C + R+  A  ++++M  +G  PDV  Y +++   C+ D +  A ++ D+M   GC  
Sbjct: 88  GFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP 147

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  L+  F  VG+++GA+ L   M E+G  P+A TY +++ GLC    L +A ++F
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLF 207

Query: 529 NK-----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LL 580
            +     S   DV       ST + SL + G    A +L+  + S  G S + V    LL
Sbjct: 208 KEMEESGSCPPDVF----TYSTIVDSLVKSGKVDDACRLVEAMVSK-GCSPNVVTYSSLL 262

Query: 581 KSLADAREVEMAIEHIKWIQES--SPTML 607
             L  A +++ A   ++ +  S  SP ++
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIV 291


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 241/536 (44%), Gaps = 19/536 (3%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F WA  Q  + HS   Y+ ++  L  +     ID +L Q+K   I    S++  I+    
Sbjct: 91  FKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYG 150

Query: 131 QGKNTQKAFSVFNEVK--FNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
           +     +A  +  ++K  + CE   P     N +L VL        A  +F +M  +GV 
Sbjct: 151 RAGLPGQATRLLLDMKGVYCCE---PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVS 207

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +   FG+ +   C   ++     +L ++ K  +  +  S+I   +I    K  RV+EA 
Sbjct: 208 PNDYTFGLVMKALCMVNEVDNACLLLRDMTK--HGCVPNSMIYQTLIDALSKRDRVDEAL 265

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           K+L+E+ +  C PD   +  V   F  +  V E   ++ +    G  P    Y   + GL
Sbjct: 266 KLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGL 325

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
               RI EA+ L   +        + ++N  + +   ++  +A V ++ MI  G VP + 
Sbjct: 326 CKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRN-GRLNEATAFV-YDKMINNGYVPDVF 383

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T S L   LCK+      +E+   + A     ++ +Y +++   C  G+L EA  +++EM
Sbjct: 384 TFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREM 443

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             KG   +   YN+L+ A C+   +  A  ++ +M + GC  ++ T+N LI     V E+
Sbjct: 444 LTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEM 503

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           E AL L+ +M+ +GV  ++ T+ +L+    +   +Q A ++ N  +     L     +  
Sbjct: 504 EDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGL 563

Query: 547 MISLCR-----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           + +LC+     +G  L    + +GL+  +   +   IL+     A +V  A+E ++
Sbjct: 564 IKALCKTGAVEKGLGLFEEMIRKGLTPSIITCN---ILINGFCTAGKVHNALEFMR 616



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/499 (22%), Positives = 224/499 (44%), Gaps = 23/499 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++  ++K+L +  +++    +L+ +  +    +S +Y+ +I +L +     +A  +  E+
Sbjct: 212 TFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM 271

Query: 146 KF-NCEDIGPEICNSLLAVLASDGYIDNAL---KMFDEMSHRGVEFSTIGFGVFIWKFCE 201
               C    P   N+   V+     ++  L   K+ D M  +G   + + +G  +   C+
Sbjct: 272 FLMGC----PPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCK 327

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK-VLDELRIRECKPD 260
             ++ +  ++L +V        N       +++GF +  R+ EA   V D++      PD
Sbjct: 328 TCRIDEAQALLSKVPGPNVVHFN------TLVNGFVRNGRLNEATAFVYDKMINNGYVPD 381

Query: 261 FIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
              +  +        L GS  E    +  K   G  P  N Y   I G   + ++ EA  
Sbjct: 382 VFTFSTLVNGLCKKGLFGSALELVNDMDAK---GCKPNLNTYTILIDGFCKKGQLEEAGL 438

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           +   +++  F+++    NALI ++        A+  F  M  KG  P + T ++L   LC
Sbjct: 439 ILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLC 498

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           + ++ ++ + +Y+ +       +  ++N ++      G ++EA  ++ +M  +G   D  
Sbjct: 499 RVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEI 558

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN L++A C+   +     L+++M   G + ++ T NILI+ F   G++  AL    +M
Sbjct: 559 TYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDM 618

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           + +G +PD  TY SL+ GLC+   +Q A  +F K     +       +T +  LCR G F
Sbjct: 619 IHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAF 678

Query: 557 LVATKLL-RGLSSDLGHSD 574
             A  LL RG+ +    +D
Sbjct: 679 DDACFLLYRGVENGFVPND 697



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 186/414 (44%), Gaps = 14/414 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKA 138
           FT + ++Y  ++  L  + +I+   ++L +V   N +  ++ V  F+      G+  +  
Sbjct: 311 FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVR----NGRLNEAT 366

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
             V++++  N         ++L+  L   G   +AL++ ++M  +G + +   + + I  
Sbjct: 367 AFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           FC+  +L +   +L E+  +  S+   +V    +I   CK  ++ EA  +  E+  + CK
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSL--NTVGYNALISALCKHGKIHEALDMFGEMSSKGCK 484

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEA 315
           PD   +  +   F L   V E E  L   R +   GV   +  +   I   +    I EA
Sbjct: 485 PDIFTFNSLI--FGLC-RVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L   ++     +D+   N LI ++         +  F  MI KG  P++ T + L   
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            C   K    +E  + +    +  D+ +YN +++ LC  GR++EA  + ++++ +G+ PD
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
              YN+L+   CRE     A  L  +   +G   N  T+NIL+  F +    EG
Sbjct: 662 SITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSEG 715


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 221/495 (44%), Gaps = 30/495 (6%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           L R + A  ++L ++    +  D+  Y  ++    +     KAF  +N +  N       
Sbjct: 397 LGRMVEA-HNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTL 455

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N+LL    S G ID+AL+++  M  +G+  + I     +  F ++ K  + L++  E 
Sbjct: 456 TYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKET 515

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R   +   +     +I+G CK +R+ EA +++D+++   C PD I YR +   +  +G
Sbjct: 516 LAR--GLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIG 573

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     +L +   LG AP    +   I G  + ++  +  ++   + +   + +     
Sbjct: 574 DMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYG 633

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI G     D  +A   +  MIEKG VP L   S+L     ++ K DE   V + L   
Sbjct: 634 ALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGT 693

Query: 395 DYFTDMES--------------------------YNVMVSFLCTSGRLREAYGVIQEMKR 428
           D   D+ +                          +N+++  LC  GR+ +A  ++ ++K 
Sbjct: 694 DMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKD 753

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG   D   Y+SL+  C     +  A  L D M + G + N+ TYN LI    + GE+  
Sbjct: 754 KGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSR 813

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+ LF  +  KG++P+A TY +L++  C++  +  AF++  + +   +       S  + 
Sbjct: 814 AVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILIN 873

Query: 549 SLCRRGHFLVATKLL 563
            LC +G+   A KLL
Sbjct: 874 GLCTQGYMEEAIKLL 888



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 186/394 (47%), Gaps = 37/394 (9%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  LA+ G +D AL++FDEM   G   S       + +  +   LG  +++ +++ +R 
Sbjct: 179 LLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQM-QRA 237

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
            ++ +   +A++    +CK K V  A + ++E+     + + +AY  V   +  +G   +
Sbjct: 238 GALPDKFTVAIMA-KAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTND 296

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK-FTIDDDVLNALI 338
              +L      G +P    Y   + G   E+ + EA+ + + I   K   +D+ V  A+I
Sbjct: 297 ARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVI 356

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                          N   + GR+   + L N            E+V+    L  N +  
Sbjct: 357 ---------------NGYCQMGRMEDAARLLN------------EMVD--SRLQVNLFV- 386

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
               YN+M++  C  GR+ EA+ ++ EM   G+ PD   YNSL++  C++ L+  A + +
Sbjct: 387 ----YNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETY 442

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           + M  +G +    TYN L+  F  +G I+ ALRL+  ML+KG+AP+  + ++LL+G  + 
Sbjct: 443 NTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKS 502

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              + A  ++ +++   +    +  +T +  LC+
Sbjct: 503 GKTEKALNLWKETLARGLAKNTTTFNTVINGLCK 536



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/484 (20%), Positives = 222/484 (45%), Gaps = 6/484 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           S +SIL  L+ +  + A  +V +Q++      D      +  +  + K    A     E+
Sbjct: 210 SCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEM 269

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                ++     ++++      G  ++A +M D +  RG   + + + + +  +C    +
Sbjct: 270 TKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNM 329

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+RK +  +++ +V    +I+G+C+  R+E+A ++L+E+     + +   Y 
Sbjct: 330 EEAEGVVQEIRKNKQLVVDEAVFGA-VINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYN 388

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           I+   +  +G + E   +L +   +GV P T  Y   + G   +  + +A E    ++  
Sbjct: 389 IMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRN 448

Query: 326 KFTIDDDVLNALIG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            F       NAL+    S+ SID   A+  +  M++KG  P   + S L     K  K++
Sbjct: 449 GFAATTLTYNALLKGFCSLGSID--DALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTE 506

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + + ++K   A     +  ++N +++ LC   R+ EA  ++ +MK+    PD+  Y +L 
Sbjct: 507 KALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLF 566

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+   +  A ++ +++   G +  ++ +N LI+      +      +   M  +G++
Sbjct: 567 SGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLS 626

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P+   Y +L+ G C+E +L  A+ ++ + +   ++    I S+ +    R+G F  A  +
Sbjct: 627 PNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLV 686

Query: 563 LRGL 566
           L+ L
Sbjct: 687 LQNL 690



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 173/405 (42%), Gaps = 30/405 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++++++  L    ++   + ++ ++K  +   D   YR +     +  +  +A  + NE+
Sbjct: 526 TFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNEL 585

Query: 146 KFNCEDIG--P--EICNSLLA---VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
               E++G  P  E  NSL+    +    G +++ L    EMS+RG+  +T+ +G  I  
Sbjct: 586 ----ENLGFAPTIEFFNSLITGHFIAKQHGKVNDILF---EMSNRGLSPNTVAYGALIAG 638

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           +C+   L    ++  E+   E  ++    I   ++  F +  + +EA  VL  L   +  
Sbjct: 639 WCKEGDLHTAYNLYLEMI--EKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMI 696

Query: 259 PDFIAYRIVAEEFKLMGSV--FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           PD  A R+       +G V  F   V         +      +   I GL    RI +AK
Sbjct: 697 PDISAPRLE------IGKVANFIDTVAGGNHHSAKIM-----WNIVIFGLCKLGRIEDAK 745

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L   +    F  D+   ++LI G  +S     A    + M+  G  P + T ++L   L
Sbjct: 746 NLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGL 805

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK  +    V ++K L       +  +YN ++   C  G + EA+ + Q M  +G+ P V
Sbjct: 806 CKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTV 865

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
             Y+ L+   C +  +  A KL DQM  +    N  TY  LI  +
Sbjct: 866 FTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGY 910



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           ++ L+ A      L  A +++D+M   GC  ++++ N ++++ ++ G++   + +F  M 
Sbjct: 176 FDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQ 235

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             G  PD  T   + +  C+   +  A E   +     V +        M   C  G   
Sbjct: 236 RAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTN 295

Query: 558 VATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609
            A ++L     RG S ++    ++ +L+K   + + +E A   ++ I+++   ++ E
Sbjct: 296 DARRMLDSLPGRGFSPNI---VTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDE 349


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 190/399 (47%), Gaps = 12/399 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL VL   G +++A ++FDEM+        + +G+ I  +C   +L   + +LD++  
Sbjct: 266 NILLKVLCGAGRVEDARQLFDEMA---SPPDVVTYGILIHGYCALGELENAVKLLDDMVA 322

Query: 218 R---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R    N+ +  SV+A+L     C   RV +A  V++++   +   D   Y  V   F   
Sbjct: 323 RGVEPNATVYTSVVALL-----CDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNK 377

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +        + ++ G+A     Y   I GL     + EA+++ + +++ +  +D+   
Sbjct: 378 GDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTY 437

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             L+ G         A    N M+++G  P + T + LS  LCK+       E+   +S 
Sbjct: 438 TVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSN 497

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +  +YN +++ LC +G L +A   + +M   GL PDV  Y +L++A C+   L  
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDR 557

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L  +M  +G    + TYN+L++ F   G +EG  +L   MLEK + P+ATTY SL++
Sbjct: 558 AHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMK 617

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             C   N+++  E++    + +V    +  +  +   C+
Sbjct: 618 QYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 178/411 (43%), Gaps = 49/411 (11%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           PE CN++L+ L     +D A+++F  +  + V      + + +   C   ++     + D
Sbjct: 235 PEACNAVLSRLP----LDEAIELFQGLPDKNV----CSYNILLKVLCGAGRVEDARQLFD 286

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E+    + +  G     ++IHG+C    +E A K+LD++  R                  
Sbjct: 287 EMASPPDVVTYG-----ILIHGYCALGELENAVKLLDDMVAR------------------ 323

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
                            GV P    Y   +  L  + R+ +A  + E +V  K  +D+ V
Sbjct: 324 -----------------GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAV 366

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ++ G  +  D  SA  +F+ M  KG      T + L   LC+  +  E  +V + + 
Sbjct: 367 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEML 426

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           A     D  +Y V+V   C  G++ EA+ V   M ++G+ P+V  Y +L +  C++  ++
Sbjct: 427 ARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQ 486

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L  +M   G   N  TYN LI+   + G ++ A+R   +M   G+ PD  TYT+L+
Sbjct: 487 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLI 546

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + LC+   L  A ++  + +++ +       +  M   C  G      KLL
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 597



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 177/424 (41%), Gaps = 42/424 (9%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  S++A+L   G + +AL + ++M H  V      +   +  FC    L       DE+
Sbjct: 331 VYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEM 390

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +++   +    V    +I+G C+   ++EA KVL E+  R    D + Y ++ + +   G
Sbjct: 391 QRK--GLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRG 448

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E   V     + GVAP    Y     GL  +  +  A EL   + +    ++    N
Sbjct: 449 KMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYN 508

Query: 336 ALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           +LI  +     +D   A+     M   G  P + T + L   LCK  + D   ++ + + 
Sbjct: 509 SLINGLCKAGYLD--QAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            N     + +YNV+++  C SGR+     +++ M  K + P+ + YNSLM+  C  + ++
Sbjct: 567 DNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMK 626

Query: 453 PAKKLWDQMFASGCSGNLKTYNILI-----------SKFSEVGEIEGALRL--------- 492
              +++  M +     N  TYNILI           +++     IE   RL         
Sbjct: 627 STTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALI 686

Query: 493 ---------------FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                          FH+M ++G   +   Y   ++    E NL+A   + ++ V   ++
Sbjct: 687 RLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746

Query: 538 LARS 541
            +++
Sbjct: 747 KSKA 750



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 145/287 (50%), Gaps = 10/287 (3%)

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           R+ +A++L + + S    +   +L  + G  +  +  +A+   + M+ +G  P  +  ++
Sbjct: 277 RVEDARQLFDEMASPPDVVTYGIL--IHGYCALGELENAVKLLDDMVARGVEPNATVYTS 334

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +   LC + +  + + V + +  +    D   Y  ++S  C  G L  A     EM+RKG
Sbjct: 335 VVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKG 394

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L  D   Y +L+   CR   L+ A+K+  +M A     +  TY +L+  + + G++  A 
Sbjct: 395 LATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAF 454

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           ++ + M+++GVAP+  TYT+L +GLC++ ++QAA E+ ++  N  + L     ++ +  L
Sbjct: 455 QVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL 514

Query: 551 CRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
           C+ G+   A + +      GL  D+    ++  L+ +L  + E++ A
Sbjct: 515 CKAGYLDQAMRTMADMDAAGLKPDVY---TYTTLIDALCKSGELDRA 558



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/454 (21%), Positives = 189/454 (41%), Gaps = 77/454 (16%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN T     Y S++  L    +++   +V++ +  +K+ LD +VY  ++          
Sbjct: 326 EPNAT----VYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGF------- 374

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
                               CN         G + +A + FDEM  +G+    + +   I
Sbjct: 375 --------------------CNK--------GDLVSARRWFDEMQRKGLATDGVTYTTLI 406

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C   +L +   +L E+  R   +    V   +++ G+CK  ++ EAF+V + +  R 
Sbjct: 407 NGLCRAGELKEAEKVLQEMLARRLDV--DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRG 464

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P+ + Y  +++     G V     +L +    G+      Y   I GL      C+A 
Sbjct: 465 VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL------CKAG 518

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            L + +     T+ D                        M   G  P + T + L   LC
Sbjct: 519 YLDQAMR----TMAD------------------------MDAAGLKPDVYTYTTLIDALC 550

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  + D   ++ + +  N     + +YNV+++  C SGR+     +++ M  K + P+ +
Sbjct: 551 KSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNAT 610

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN- 495
            YNSLM+  C  + ++   +++  M +     N  TYNILI    +   ++ A + FHN 
Sbjct: 611 TYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEA-QYFHNE 669

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           M+EKG    A++Y++L+  L ++     A ++F+
Sbjct: 670 MIEKGFRLTASSYSALIRLLNKKKKFVEARKLFH 703



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DE +E+++ L   +    + SYN+++  LC +GR+ +A  +  EM      PDV  Y  L
Sbjct: 248 DEAIELFQGLPDKN----VCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGIL 300

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C    L  A KL D M A G   N   Y  +++   + G +  AL +  +M+   V
Sbjct: 301 IHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKV 360

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
             D   YT++L G C + +L +A   F++     +       +T +  LCR G    A K
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 562 LLR 564
           +L+
Sbjct: 421 VLQ 423


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 141/592 (23%), Positives = 254/592 (42%), Gaps = 60/592 (10%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           R   D   R   AI++  +  RP   W+ + E  L       S +P +V RV+N   L  
Sbjct: 3   RAPIDDIPRTVTAILNLLHSGRP---WSAI-EPDLSPFS-GASTTPRIVGRVVNS--LKD 55

Query: 64  HSLALGFFNWASQQ-PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
             LAL FF WA    P F+H+  S++S+L+ L   ++      + +   +     D   Y
Sbjct: 56  AKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSY 115

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVK------------------FNCEDIG----------- 153
             +I       +   A  +  E+K                   N  D+            
Sbjct: 116 NIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC 175

Query: 154 -PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P +    +L+A  A    ++ A+K+ +EM  RG   + + + V +   C   KL  V +
Sbjct: 176 DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC---KLSMVGA 232

Query: 211 MLDEVRKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
             D V+K    MI G     +     ++ GFCK   V++A K+L  +  +  +P+ + Y 
Sbjct: 233 AQDVVKK----MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYS 288

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +         E + VL++ +  GV P    Y   I GL    +I EA+++   +   
Sbjct: 289 ALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 348

Query: 326 KFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK-SDE 383
             T D  V +++I +   S     A      M ++ + P + T + +   LCK  K ++ 
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 408

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            V + ++  + D   D+ +Y+ +++ LC S  L EA  ++  M + G +PDV  Y ++++
Sbjct: 409 QVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIID 468

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+   L  A+ L   M  +GC+ N+ TY  LIS   +  +++ A R+   M   G  P
Sbjct: 469 GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPP 528

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK------SVNHDVMLARSILSTFMIS 549
           +  TY +++ GLC    ++ A ++  +        + D    R+I++  M S
Sbjct: 529 NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 580



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+      G +D+A K+   M  +G+  + + +   I   C++ K  +   +L+E++ 
Sbjct: 253 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKT 312

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   +   +     +IHG CK  ++EEA ++L  +    C PD + Y  +   F   G +
Sbjct: 313 R--GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 370

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E +  L++ RK   +P    Y   I GL    +I EA+                     
Sbjct: 371 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ--------------------- 409

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLS---A 393
                        V    M E G V P + T S +   LCK   SD LVE  K+L     
Sbjct: 410 -------------VILEQMQESGDVLPDVVTYSTVINGLCK---SDMLVEAQKLLDRMCK 453

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+ +Y  ++  LC  GRL EA  ++Q MKR G  P+V  Y +L+   C+   +  
Sbjct: 454 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 513

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE--KGVAPDATTYTSL 511
           A+++ ++M  +GC  NL TYN +++     G I+ A +L   M +     +PDA TY ++
Sbjct: 514 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 573

Query: 512 LEGLCQETNLQAAFEVFNK 530
           +  L     +Q A ++  +
Sbjct: 574 VNALMSSDLVQEAEQLLEQ 592



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 158/335 (47%), Gaps = 5/335 (1%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I GFC    +  A ++L+E++     PD   +  +      M +  + +  +   R +
Sbjct: 117 IVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPI---ITAMANAGDLDGAMDHLRSM 173

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   I      +++ EA +L E +       +    N L+ ++  +    A 
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233

Query: 351 V-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 MIE G  P + T ++L    CKR   D+  ++  ++ A     ++ +Y+ ++  
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC S +  EA  V++EMK +G+ PD   Y++L+   C+ D +  A+++  +M  SGC+ +
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  Y+ +I  F + G++  A +    M ++  +PD  TY ++++GLC+   +  A  +  
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILE 413

Query: 530 K-SVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +   + DV+      ST +  LC+    + A KLL
Sbjct: 414 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 448



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 8/294 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL- 231
           A ++ +EM  RGV      +   I   C+  K+ +   ML   R+   S     V+    
Sbjct: 303 AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQML---RRMAGSGCTPDVVVYSS 359

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           IIH FCK  ++ EA K L E+R +   PD + Y  V +    +G + E +V+L++ ++ G
Sbjct: 360 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419

Query: 292 -VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSA 349
            V P    Y   I GL     + EA++L + +       D      +I  +        A
Sbjct: 420 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 479

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M   G  P + T + L   LCK  K DE   V + +       ++ +YN MV+ 
Sbjct: 480 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 539

Query: 410 LCTSGRLREAYGVIQEMK--RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           LC SGR++EA  ++Q MK  R    PD + Y +++ A    DL++ A++L +QM
Sbjct: 540 LCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 52/370 (14%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  R  EA  +     +  C+PD  +Y IV   F   G +     +L++ +  G AP  
Sbjct: 90  CKKHR--EAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDA 147

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             +   I  +                                   ++ D   A+     M
Sbjct: 148 FTHTPIITAM----------------------------------ANAGDLDGAMDHLRSM 173

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
              G  P + T + L     +  K +E +++ + +       ++ +YNV+V  LC    +
Sbjct: 174 ---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMV 230

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A  V+++M   G  P+V  +NSL++  C+   +  A+KL   M A G   N+ TY+ L
Sbjct: 231 GAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSAL 290

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SV 532
           I    +  +   A  +   M  +GV PDA TY++L+ GLC+   ++ A ++  +      
Sbjct: 291 IDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGC 350

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-----SSDLGHSDSHVILLKSLADAR 587
             DV++  SI+  F    C+ G  L A K L+ +     S D+   ++ +  L  L    
Sbjct: 351 TPDVVVYSSIIHAF----CKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 588 EVEMAIEHIK 597
           E ++ +E ++
Sbjct: 407 EAQVILEQMQ 416



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 42/241 (17%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y SI+ +   S ++      L++++  + + D   Y  +I  L +     +A  +  +++
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQ 416

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            +  D+ P++   ++++  L     +  A K+ D M   G     + +   I   C+  +
Sbjct: 417 ES-GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGR 475

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR----------- 253
           L +   +L  + KR     N  V    +I G CK ++V+EA +V++E+R           
Sbjct: 476 LEEAEYLLQGM-KRAGCAPN-VVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 533

Query: 254 ------------IRE--------------CKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
                       I+E              C PD   YR +         V E E +L++ 
Sbjct: 534 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593

Query: 288 R 288
           +
Sbjct: 594 K 594


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 255/556 (45%), Gaps = 37/556 (6%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S  +  F WAS+QPNF  S   +  +L  L  + + +A+  +LK++K++   +D+     
Sbjct: 70  SAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDND---- 125

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--------NSLLAVLASDGYIDNALKM 176
              SL+    +  +F ++NE+    + +  E          N LL VL  DG   N LK+
Sbjct: 126 ---SLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLV-DG---NKLKL 178

Query: 177 FD----EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
            +     M  RG+      F + I   C   ++   + +++E+   +  ++        I
Sbjct: 179 VEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEME--DFGLLPDEKTFTTI 236

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-----FEREVVLKKK 287
           + GF +   ++ A +V +++    C    +   ++   F   G +     F  E+ L++ 
Sbjct: 237 MQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLRE- 295

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DP 346
              G  P    +   + GL     +  A E+ ++++   F  D    N+LI  +  + + 
Sbjct: 296 ---GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEV 352

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+   N MIE+   P   T + +   LCK N+ +E  ++  VL+      D+ +YN +
Sbjct: 353 DEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSL 412

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC S     A  + +EMK KG  PD   YN L+++ C    L+ A  L  +M  SGC
Sbjct: 413 IQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGC 472

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N+ TYN LI  F +   I  A  +F  M  +GV+ ++ TY +L++GLC+   ++ A +
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
           + ++ +   +   +   ++ +   C+ G    A  +++ ++SD    D  ++  L+  L 
Sbjct: 533 LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLC 592

Query: 585 DAREVEMAIEHIKWIQ 600
            A  VE A + ++ IQ
Sbjct: 593 KAGRVEAATKLLRTIQ 608



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 215/483 (44%), Gaps = 10/483 (2%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ +L  L    ++  ++     +    I  D S +  +I +L +    + A  +  E+ 
Sbjct: 163 YNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEM- 221

Query: 147 FNCEDIG----PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
              ED G     +   +++     +G +D A+++ ++M   G   + +   V +  FC+ 
Sbjct: 222 ---EDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKE 278

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            ++ + L  ++E+  RE    +     +L+ +G  K   V+ A +V+D +      PD  
Sbjct: 279 GRIEEALRFIEEMSLREGFFPDKYTFNMLV-NGLSKTGHVKHALEVMDMMLREGFDPDIY 337

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +      +G V E   VL +  +   +P T  Y   I  L  E ++ EA +L  V+
Sbjct: 338 TYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVL 397

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  D    N+LI G   S +   A+  +  M  KG  P   T + L  +LC R K 
Sbjct: 398 TGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKL 457

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            E + + K +  +    ++ +YN ++   C + R+ EA  +  +M+ +G+  +   YN+L
Sbjct: 458 QEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C+ + +  A +L DQM   G   +  TYN L++ F + G+I+ A  +   M   G 
Sbjct: 518 IDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGC 577

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            PD  TY +L+ GLC+   ++AA ++        + L     +  + +L RR     A +
Sbjct: 578 EPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVR 637

Query: 562 LLR 564
           L R
Sbjct: 638 LFR 640



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 169/379 (44%), Gaps = 24/379 (6%)

Query: 150 EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC------E 201
           E   P+I   NSL++ L   G +D A+K+ ++M  R    +T+ +   I   C      E
Sbjct: 330 EGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEE 389

Query: 202 NAKLGQVLS---MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             KL  VL+   +L +V    +           +I G C  +    A ++  E++ + C 
Sbjct: 390 ATKLALVLTGKGILPDVCTYNS-----------LIQGLCLSRNHTVAMELYKEMKTKGCH 438

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y ++ +     G + E   +LK+    G A     Y   I G    +RI EA+E+
Sbjct: 439 PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEI 498

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +     + +    N LI G   S     A    + MI +G  P   T ++L    CK
Sbjct: 499 FDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCK 558

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                +  ++ + ++++    D+ +Y  +++ LC +GR+  A  +++ ++ KG++     
Sbjct: 559 AGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHA 618

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE-VGEIEGALRLFHNM 496
           YN +++A  R    + A +L+ +M     + +  TY I+     +  G I  A+     M
Sbjct: 619 YNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEM 678

Query: 497 LEKGVAPDATTYTSLLEGL 515
           LE+G  P+ +++  L EGL
Sbjct: 679 LERGYVPEFSSFYMLAEGL 697


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 218/479 (45%), Gaps = 14/479 (2%)

Query: 58  PYLLTH-HSLALGFFNWASQQPNFTH------SPLSYH--SILKSLSLSRQINAIDSVLK 108
           P L  H HSL     N       F H      +P ++H   IL SL   ++     S+ K
Sbjct: 23  PNLCFHSHSLPPLTHNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYK 82

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           Q++++++  D      II           AFS  +++            N+L+  L  +G
Sbjct: 83  QMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEG 142

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV- 227
            +  AL+  D++  +G   S I +G+ I   C   K+G+  + +  +R+ E   I  +V 
Sbjct: 143 KVKEALRFHDKVLAQGFRLSGISYGILINGVC---KIGETRAAIRLLRRIERWSIRPNVV 199

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           I  +II   CK   V+EA+ +  E+  +   PD + Y I+   F ++G +     +L + 
Sbjct: 200 IYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEM 259

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP- 346
               + P    Y   +  L  E ++ EA+ +  V+V     +D  V + L+     ++  
Sbjct: 260 VLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEV 319

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +A   F  M + G  P +   S +   LCK  + DE + +++ +   +   D  +Y  +
Sbjct: 320 NNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSL 379

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC SGR+   + +  EM  +G  PDV  YN+L++A C+   L  A  L+++M     
Sbjct: 380 IDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAI 439

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             N+ T+ IL+    +VG ++ AL  F ++L KG   +  TYT ++ GLC+E  L  A 
Sbjct: 440 RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 196/439 (44%), Gaps = 17/439 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L LG+      QPN     ++ ++++K L L  ++        +V      L    Y  +
Sbjct: 120 LKLGY------QPN----TITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGIL 169

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I  + +   T+ A  +   ++         I + ++  L  D  +D A  ++ EM  +G+
Sbjct: 170 INGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGI 229

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEE 244
               + + + +  FC   +L + + +L+E+   EN  IN  +    +++   CK  +V+E
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEM-VLEN--INPDIYTYTILVDALCKEGKVKE 286

Query: 245 AFKVLDELRIREC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           A  VL  + ++ C   D + Y  + + + L+  V   + V     ++GV P  + Y   I
Sbjct: 287 AENVL-AVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMI 345

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRV 362
            GL   +R+ EA  L E I       D     +LI  +      S +   F+ M+++G+ 
Sbjct: 346 NGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQP 405

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T +NL   LCK    D  + ++  +       ++ ++ +++  LC  GRL+ A   
Sbjct: 406 PDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEF 465

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            Q++  KG   +V  Y  ++   C+E LL  A  L  +M  +GC  +  T+ I+I  F +
Sbjct: 466 FQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFD 525

Query: 483 VGEIEGALRLFHNMLEKGV 501
             E + A +L   M+ +G+
Sbjct: 526 KDENDKAEKLVREMIARGL 544



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 123/250 (49%), Gaps = 2/250 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +++ G  P   TL+ L K LC   K  E +  +  + A  +     SY ++++ +C  G 
Sbjct: 119 ILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGE 178

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
            R A  +++ ++R  + P+V  Y+ +++  C++ L+  A  L+ +M   G S ++ TY+I
Sbjct: 179 TRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSI 238

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+S F  VG++  A+ L + M+ + + PD  TYT L++ LC+E  ++ A  V    V   
Sbjct: 239 LVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKAC 298

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           V L   + ST M   C       A ++   ++      D H   I++  L   + V+ A+
Sbjct: 299 VNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEAL 358

Query: 594 EHIKWIQESS 603
              + I + +
Sbjct: 359 NLFEEIHQKN 368



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 160/398 (40%), Gaps = 71/398 (17%)

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           KR   A  +  ++ + E +PD+    I+   F   G V      + K  KLG  P T   
Sbjct: 72  KRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITL 131

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI-------- 350
              + GL +E ++ EA    + +++  F +       LI  V  I + R+AI        
Sbjct: 132 NTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIER 191

Query: 351 -------VFFNFMIE--------------------KGRVPTLSTLSNLSKNLCKRNKSDE 383
                  V ++ +I+                    KG  P + T S L    C   + + 
Sbjct: 192 WSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNR 251

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++   +   +   D+ +Y ++V  LC  G+++EA  V+  M +  ++ DV  Y++LM+
Sbjct: 252 AIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMD 311

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN-------- 495
             C  + +  AK+++  M   G + ++  Y+I+I+   ++  ++ AL LF          
Sbjct: 312 GYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVP 371

Query: 496 ---------------------------MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
                                      ML++G  PD  TY +L++ LC+  +L  A  +F
Sbjct: 372 DTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALF 431

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           NK  +  +       +  +  LC+ G    A +  + L
Sbjct: 432 NKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDL 469



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+  FN M      P     + +  +L    +    + +YK +  ++   D  + N+++
Sbjct: 41  DAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIII 100

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +  C  G++  A+  + ++ + G  P+    N+LM+  C E  ++ A +  D++ A G  
Sbjct: 101 NCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFR 160

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  +Y ILI+   ++GE   A+RL   +    + P+   Y+ +++ LC++T +  A+++
Sbjct: 161 LSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDL 220

Query: 528 FN----KSVNHDVMLARSILSTF-MISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKS 582
           +     K ++ DV+    ++S F ++    R   L+   +L  ++ D+    ++ IL+ +
Sbjct: 221 YTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIY---TYTILVDA 277

Query: 583 LADAREVEMA 592
           L    +V+ A
Sbjct: 278 LCKEGKVKEA 287


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 150/579 (25%), Positives = 253/579 (43%), Gaps = 52/579 (8%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S ++  F+W   Q  + HS   Y  ++  L  + +   ID +L Q+K   I    S++  
Sbjct: 86  STSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFIS 145

Query: 125 IIPSL----IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           I+         G+ T+    + N   ++CE       N +L +L S      A  +F +M
Sbjct: 146 IMRDYDKAGFPGQTTRLMLEMRN--VYSCEPTFKSY-NVVLEILVSGNCHKVAANVFYDM 202

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             R +  +   FGV +   C   ++   LS+L ++ K  +  +  SVI   +IH   K  
Sbjct: 203 LSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTK--HGCVPNSVIYQTLIHSLSKCN 260

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           RV EA ++L+E+ +  C PD   +  V         + E   ++ +    G  P    Y 
Sbjct: 261 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYG 320

Query: 301 EFILGLIVERRICEAKELG-----------EVIVSGKFT---IDDD--VLNALI---GSV 341
             + GL    R+  AK+L              ++ G  T   +DD   VL+ ++   G V
Sbjct: 321 YLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 380

Query: 342 SSIDPRSAIVFFNF--------------MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
             +   +++++  +              M  KG  P + + + L    CK  K DE   +
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNL 440

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +SA+    +   +N ++S  C   R+ EA  + +EM RKG  PDV  +NSL+   C 
Sbjct: 441 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 500

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            D ++ A  L   M + G   N  TYN LI+ F   GEI+ A +L + M+ +G   D  T
Sbjct: 501 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEIT 560

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATK----- 561
           Y SL++GLC+   +  A  +F K +  D ++  SI    +I+ LCR G    A +     
Sbjct: 561 YNSLIKGLCRAGEVDKARSLFEKML-RDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM 619

Query: 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600
           +LRG + D+   +S   L+  L  A  +E  +   + +Q
Sbjct: 620 VLRGSTPDIVTFNS---LINGLCRAGRIEDGLTMFRKLQ 655



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 210/486 (43%), Gaps = 33/486 (6%)

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           H   A  F++  S++     +  ++  ++K+L    ++++  SVL+ +  +    +S +Y
Sbjct: 192 HKVAANVFYDMLSRK--IPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIY 249

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           + +I SL +     +A  +  E+         E  N ++  L     I+ A KM + M  
Sbjct: 250 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 309

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE----NSMINGSVI--------AV 230
           RG     I +G  +   C+  ++     +   + K      N++I+G V         AV
Sbjct: 310 RGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAV 369

Query: 231 L------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           L                  +I+G+ K   V  A +VL ++R + CKP+  +Y I+ + F 
Sbjct: 370 LSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFC 429

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            +G + E   +L +    G+ P T  +   I     E RI EA E+   +       D  
Sbjct: 430 KLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 489

Query: 333 VLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N+LI  +  +D  + A+     MI +G V    T + L     +R +  E  ++   +
Sbjct: 490 TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 549

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D  +YN ++  LC +G + +A  + ++M R GL P     N L+   CR  ++
Sbjct: 550 VFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMV 609

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +   +M   G + ++ T+N LI+     G IE  L +F  +  +G+ PD  TY +L
Sbjct: 610 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTL 669

Query: 512 LEGLCQ 517
           +  LC+
Sbjct: 670 MSWLCK 675



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 2/197 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+      G I  A K+ +EM  +G     I +   I   C   ++ +  S+ +++ +
Sbjct: 527 NTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 586

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + ++  S+   ++I+G C+   VEEA +   E+ +R   PD + +  +       G +
Sbjct: 587 --DGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 644

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   + +K +  G+ P T  Y   +  L     + +A  L +  +   F  +D   + L
Sbjct: 645 EDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSIL 704

Query: 338 IGSVSSIDPRSAIVFFN 354
           + S+   +      F+N
Sbjct: 705 LQSLVPQETLDRRTFYN 721


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/573 (24%), Positives = 247/573 (43%), Gaps = 59/573 (10%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           + ++PS + +++   L    S+ L  F  A  Q  + HS   Y+ ++  L    +   ID
Sbjct: 57  NPITPSQLCKLLELPLDVPTSMDL--FEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMID 114

Query: 105 SVLKQVKVNKITLDSSVY----RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
            +LKQ+K        S++    R+   + + G+ T+    ++      C +   +  N +
Sbjct: 115 KLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVY---CFEPTFKSYNVV 171

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           L +L +      A  +F +M  RG+  +   FGV +  FC   ++    S+L ++ K  +
Sbjct: 172 LEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTK--H 229

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY---------------- 264
             +  S+I  ++IH   +  RV EA K+L+E+ +  C+PD   +                
Sbjct: 230 GCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEA 289

Query: 265 -----RIVAEEFKL--------------MGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
                R++  +F                MG V E   +L K       P T  Y   I G
Sbjct: 290 AKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTVLYNTLING 345

Query: 306 LIVERRICEAKEL--GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            +V  R  EAK+L    ++++G F  D    N +I G        SA+ F + M++KG  
Sbjct: 346 YVVSGRFEEAKDLLYKNMVIAG-FEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFE 404

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L    CK+   +E  +V   +SA     +   YN ++  LC  G++++A  +
Sbjct: 405 PNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQM 464

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             EM  KG  PD+  +NSL+   C+ D +  A  L+  M   G   N  TYN LI  F  
Sbjct: 465 YGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLR 524

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +  I+ A +L   M  +G   D  TY  L++ LC+    +    +  +    ++  + + 
Sbjct: 525 LELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINS 584

Query: 543 LSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +  + S CR G    A + L     RGL+ D+
Sbjct: 585 CNILINSFCRTGKVNDALQFLRDMIQRGLTPDI 617



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 225/493 (45%), Gaps = 23/493 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++  ++K+  +  ++++  S+L+ +  +    +S +Y+ +I +L +     +A  +  E+
Sbjct: 202 TFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEM 261

Query: 146 -KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
               CE   P++   N ++  L   G I  A K+ D M  R      +  G  +   C  
Sbjct: 262 FLMGCE---PDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRM 318

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL-DELRIRECKPDF 261
            K+ +  +ML ++      + N       +I+G+    R EEA  +L   + I   +PD 
Sbjct: 319 GKVDEARAMLSKIPNPNTVLYN------TLINGYVVSGRFEEAKDLLYKNMVIAGFEPDA 372

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             + I+ +     G +      L +  K G  P    Y   I G   +    EA ++   
Sbjct: 373 FTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNS 432

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + +   +++    N LIG++      + A+  +  M  KG  P + T ++L   LCK +K
Sbjct: 433 MSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDK 492

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +E + +Y+ +       +  +YN ++        +++A  ++ EM+ +G   D   YN 
Sbjct: 493 MEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNG 552

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++A C+         L +QMF      ++ + NILI+ F   G++  AL+   +M+++G
Sbjct: 553 LIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRG 612

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHF 556
           + PD  TY SL+ GLC+    Q A  +FN    K ++ D +   +++S +    C  G F
Sbjct: 613 LTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRY----CYEGLF 668

Query: 557 LVATKLL-RGLSS 568
             A +LL +G+S+
Sbjct: 669 NDACQLLFKGVSN 681



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 5/325 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++  L   GY+ +AL+  DEM  +G E + I + + I  FC+     +   +++ +  
Sbjct: 376 NIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSA 435

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +  S+   +V    +I   CK  ++++A ++  E+  + CKPD   +  +         +
Sbjct: 436 KGLSL--NTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKM 493

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNA 336
            E   + +     GV   T  Y   I   +    I +A +L GE+   G   +D+   N 
Sbjct: 494 EEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG-CPLDNITYNG 552

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI ++         +     M  +   P++++ + L  + C+  K ++ ++  + +    
Sbjct: 553 LIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRG 612

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +YN +++ LC  GR +EA  +   ++ KG+ PD   YN+L+   C E L   A 
Sbjct: 613 LTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDAC 672

Query: 456 KLWDQMFASGCSGNLKTYNILISKF 480
           +L  +  ++G   N  T++ILI+ F
Sbjct: 673 QLLFKGVSNGFIPNEITWSILINYF 697


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 225/513 (43%), Gaps = 42/513 (8%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ ++  L    +I+A  +VLK +       D   Y  +I    Q     +A  +  ++K
Sbjct: 130 YNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMK 189

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            +   + P+    N+LL  L     ++   K+ +EM   G E  T  +   +   CE+ K
Sbjct: 190 ES--GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK 247

Query: 205 L---GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
               G++L  + E +   + +   S     ++ GFCK  +++EA ++L+++  R C P  
Sbjct: 248 YEEAGKILEKMIEKKCGPDVVTYNS-----LMDGFCKVSKMDEAERLLEDMVGRRCAPTV 302

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  +   F     + +   V++   K G++P    Y   + GL    ++ EA EL EV
Sbjct: 303 ITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEV 362

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +V      D    + L+  +  +     A +    M+E+G  P L T + +    CK  K
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422

Query: 381 SDE---LVEVYKVLSA--------------------NDYFT------DMESYNVMVSFLC 411
            DE   ++E+ K +S                      D F       D  SY+ M+  LC
Sbjct: 423 VDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLC 482

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           ++G++ EA  V+  M ++G  P  S Y  ++   C  +    A K+   M   GC  NL 
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLY 542

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ILI+   +   +E A+ +   MLEKG  PD  TYTSL++G C+   + AA++ F   
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            +      +   +  +   C+ G+   A ++++
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQ 635



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 230/513 (44%), Gaps = 51/513 (9%)

Query: 51  LVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQ 99
           ++ R   P ++T+ SL +G     +           ++   T   ++Y+++L  L    Q
Sbjct: 153 MLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQ 212

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC- 157
           +  +  +L+++       D+  Y  ++  L +    ++A  +  + ++  C   GP++  
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKC---GPDVVT 269

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            NSL+        +D A ++ ++M  R    + I +   I  F    +L     +++++ 
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMF 329

Query: 217 KRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           K   + I+  ++    ++ G CK  ++EEA ++L+ +  ++C PD + Y I+      +G
Sbjct: 330 K---AGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLG 386

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V +  ++L+   + G  P    +   I G     ++ E  ++ E++     T D    +
Sbjct: 387 KVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYS 446

Query: 336 ALI------------------------------GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
            LI                              G  S+     A    + M ++G  PT 
Sbjct: 447 TLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTS 506

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
           S  + +   LC   + DE +++ +V+S      ++ +Y+++++ LC + R+ +A  V+  
Sbjct: 507 SHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDV 566

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG  PDV+ Y SL++  C+ + +  A + +  M  SGC  +   YNILIS F + G 
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN 626

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           +E A+ +   MLEKG  PDA TY SL+  L  E
Sbjct: 627 VEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 227/502 (45%), Gaps = 35/502 (6%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEV---KFNCEDIGPEIC--NSLLAVLASDGYIDNA 173
           +S Y  +I    +  N++    + NE+   +F+     P++   N++L      G +D A
Sbjct: 24  NSTYGALITGFSRAGNSKMVLEIANEMLARRFS-----PDVITHNTILKAYCQIGDLDRA 78

Query: 174 LKMFDEMSHRGVEF---STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           L  F     RG  +   +   + + I   C+  ++ +   +LDE+ +++      + +  
Sbjct: 79  LSHF-----RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCH--PDAAVYN 131

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I G CK  +++ A  VL  +  R C PD I Y  +        ++ E   +++K ++ 
Sbjct: 132 CLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES 191

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSA 349
           G+ P T  Y   + GL  + ++ E  +L E +V      D    N ++  +  S     A
Sbjct: 192 GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEA 251

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 MIEK   P + T ++L    CK +K DE   + + +        + +Y  ++  
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGG 311

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
              + RL +AY V+++M + G+ PD+  YN L++  C+   L  A +L + M    C+ +
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF- 528
           + TY+IL++   ++G+++ A  L   MLE+G  P+  T+ ++++G C+   +    +V  
Sbjct: 372 VVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE 431

Query: 529 ---NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD 585
                S   DV+      ST +   C+      A  +L G+S D     S+  +L+ L  
Sbjct: 432 LMKEVSCTPDVV----TYSTLIDGYCKANRMQDAFAIL-GISPD---KASYSSMLEGLCS 483

Query: 586 AREVEMAIEHIKWI--QESSPT 605
             +VE A E +  +  Q   PT
Sbjct: 484 TGKVEEAQEVMDLMTKQGCPPT 505



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R  E Y   +E       P  S Y +L+    R    +   ++ ++M A   S ++ T+N
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            ++  + ++G+++ AL  F   +    +P A TY  L+ GLCQ   +  A+++ ++ +  
Sbjct: 64  TILKAYCQIGDLDRALSHFRGKM--WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK 121

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR 564
           D     ++ +  +  LC+ G    A  +L+
Sbjct: 122 DCHPDAAVYNCLIAGLCKMGKIDAARNVLK 151


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 190/419 (45%), Gaps = 10/419 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++LL  L+S   I +A+K+FDEM   G E   I +   I   C   K+G     +  ++K
Sbjct: 51  STLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLC---KMGSTTMAIQLLKK 107

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E      +V+    II   CK K + EA + L E+  R   P+ + Y  +   F  +G 
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E   + K+  +  V P T  +   + GL  E  I EA+ + E ++      + +  NA
Sbjct: 168 SNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ G  S      A   FN M+ KG  P++ + + L K  CK  + DE   +   +S   
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y+ ++   C  GR ++A  +++EM+  GL PD+  Y+ +++  C++  L  A 
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAF 347

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L   M  S    N+  Y ILI      G++E A  LF N+  KG+ PD  TYT ++ GL
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
            +      A E+F     H  +      +  +    R G    A +L+     RG S+D
Sbjct: 408 LKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSAD 466



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 181/398 (45%), Gaps = 41/398 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G     ++ +A K+ DE+     +PD I Y  +      MGS      +LKK  + G
Sbjct: 53  LLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG 112

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P    Y   I  L  ++ I EA E                                  
Sbjct: 113 CKPNVVVYSTIIDSLCKDKLITEAME---------------------------------- 138

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + M+ +G  P + T S++    C   +S+E   ++K +   +   D  ++N++V  L 
Sbjct: 139 FLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLS 198

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + EA  V + M  KG++P+V+ YN+LM+  C +  +  A+KL++ M   GC+ +++
Sbjct: 199 KEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVR 258

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           +YNILI    + G I+ A  L   M  K + PD  TY++L++G CQ+   Q A ++  + 
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
            ++ ++      S  +  LC++GH   A +LL+ +       +   + IL++ + +  ++
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378

Query: 590 EMAIE-----HIKWIQESSPTMLQEISAELFASLSSSS 622
           E A E      +K IQ    T    IS  L   LS+ +
Sbjct: 379 EAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEA 416



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 167/373 (44%), Gaps = 17/373 (4%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y +I+ SL   + I      L ++    I+ +   Y  I+        + +A S+F ++ 
Sbjct: 120 YSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV 179

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               ++ P+    N L+  L+ +G I  A  +F+ M  +GVE +   +   +  +C    
Sbjct: 180 E--RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQ-- 235

Query: 205 LGQVLSMLDEVRKRENSMI-NGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                S +DE +K  N M+  G   +V    ++I G CK  R++EA  +L E+  +   P
Sbjct: 236 -----SQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTP 290

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  + + F   G   + + +L++ R  G+ P    Y   + GL  +  + EA EL 
Sbjct: 291 DTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELL 350

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + +   K   +  +   LI  + +     +A   F+ +  KG  P + T + +   L K 
Sbjct: 351 KAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKG 410

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
             S+E  E+++ ++ +    +  +YNV++     +G    A  +I+EM  +G   D S +
Sbjct: 411 GLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTF 470

Query: 439 NSLMEACCREDLL 451
             L +   R++++
Sbjct: 471 QMLSDLESRDEII 483


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 140/607 (23%), Positives = 258/607 (42%), Gaps = 75/607 (12%)

Query: 47  LSPSLVARVI-NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID- 104
           LSP +V  +I NP    +  L   FF WAS    F     ++ S      L    N ++ 
Sbjct: 57  LSPKIVTSIIQNP---PNPQLGFRFFIWASNFKRFR----AWESCDLITDLLINQNGLEL 109

Query: 105 --SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEIC--NS 159
               L+ +K   I + +  +  +I   ++   T KA   F  ++ F+C    P++   N 
Sbjct: 110 YCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCT---PDVYTYNM 166

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L VL    ++  AL ++  M       +   F + I   C++  +   L + DE+ +R 
Sbjct: 167 ILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQR- 225

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             ++  +    ++I G C+ KRV++A+++ D+++     PDF+    +   F ++  V E
Sbjct: 226 -GILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDE 284

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L+   K G       Y   I GL   +R  + + L   ++      D  +   ++ 
Sbjct: 285 AFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMK 344

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   +   R A+   N M E G VP     + L K  C      E   +   +S +D F 
Sbjct: 345 GLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFP 404

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----------- 447
           ++++Y++++S +C +G  R+A  +  EM++ G  P    +NSL++  C+           
Sbjct: 405 NVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLF 464

Query: 448 -------------------------------------EDLLRPAKKLWDQMFASGCSGNL 470
                                                  L+  A ++  Q+  SG +  +
Sbjct: 465 YKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGI 524

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYNIL++ F ++G   GA +LF  M  KG++PD  TY +L+ GL +    + A++VF++
Sbjct: 525 YTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ 584

Query: 531 SVNHDVMLARSILSTFMISLCRRGH----FLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
              +      ++  T M  +CRR      F +  K LR + S     D  +  ++   + 
Sbjct: 585 MEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRS---QEDEAIKAIEGYFEK 641

Query: 587 REVEMAI 593
           +EVE A+
Sbjct: 642 QEVEKAV 648


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 224/487 (45%), Gaps = 11/487 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++  ++K+L +  ++++  S+L+ +  +    +S +Y+ +I +L +     +A  +  ++
Sbjct: 207 TFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDM 266

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
              C +   +  N ++  L   G I  A K+ D M  RG     + +G  +   C   ++
Sbjct: 267 FLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC---RM 323

Query: 206 GQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVL-DELRIRECKPDFIA 263
           GQV    DE R   N + N  +V+   +I G+    R EEA  +L + + I   +PD   
Sbjct: 324 GQV----DEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYT 379

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           + I+ +     G +     +L +       P    Y   I G   + R+ EA E+   + 
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMS 439

Query: 324 SGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +   +++    N LI ++    +   A+  F  M  KG  P + T ++L   LCK +K +
Sbjct: 440 AKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKME 499

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + +Y  +       +  +YN +V        +++A+ ++ EM  +G   D   YN L+
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +A C+   +     L+++M   G    + + NILIS     G++  AL+   +M+ +G+ 
Sbjct: 560 KALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLT 619

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           PD  TY SL+ GLC+  ++Q A  +FNK  +  +       +T +   C  G F  A  L
Sbjct: 620 PDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLL 679

Query: 563 L-RGLSS 568
           L +G+ S
Sbjct: 680 LYKGVDS 686



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 151/624 (24%), Positives = 251/624 (40%), Gaps = 87/624 (13%)

Query: 22  NRTRPARKWTPL-LEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNF 80
           N T   R   P  L+Q    L L   +SP  + +++   L    S+ L  F  A  Q  +
Sbjct: 39  NETEWERLLKPFDLKQLRRSLSLT-PISPFQLCKLLELPLDIPTSMEL--FQRAGAQKGY 95

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL----IQGKNTQ 136
           +H+  + + ++  L        I+ +LKQ+K   +    S++  I+       + G+ T+
Sbjct: 96  SHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATR 155

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
               ++    ++C+       N +L +L        A  +F +M  RGV  +   FGV +
Sbjct: 156 LLLDMWG--VYSCDPTFKSY-NVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVM 212

Query: 197 WKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVL---------------------- 231
              C  +++    S+L ++ K     NS+I  ++I  L                      
Sbjct: 213 KALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCE 272

Query: 232 --------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
                   +IHG C+  R+ EA K+LD + +R    D + Y  +      MG V E   +
Sbjct: 273 PDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARAL 332

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL--GEVIVSGKFTIDDDVLNALI-GS 340
           L K       P T  Y   I G +   R  EAK+L    ++++G +  D    N +I G 
Sbjct: 333 LNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAG-YEPDAYTFNIMIDGL 387

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V      SA+   N M+ K   P + T + L    CK+ + +E  E+   +SA     + 
Sbjct: 388 VKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNT 447

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE------------ 448
             YN ++  LC  G + EA  +  EM  KG  PD+  +NSL+   C+             
Sbjct: 448 VGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHD 507

Query: 449 -----------------------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
                                  D ++ A KL D+M   GC  +  TYN LI    + G 
Sbjct: 508 MFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGA 567

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +E  L LF  ML KG+ P   +   L+ GLC+   +  A +     ++  +       ++
Sbjct: 568 VEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNS 627

Query: 546 FMISLCRRGHFLVATKLLRGLSSD 569
            +  LC+ GH   A+ L   L S+
Sbjct: 628 LINGLCKMGHVQEASNLFNKLQSE 651


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 228/485 (47%), Gaps = 25/485 (5%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L+ +G I  AL +  EM    V+ + + +   I   C++  +   L +  ++ +R
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              ++  +V    +I G C   R +E  ++L ++      PD   + I+ +     G + 
Sbjct: 225 --GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E + VL    K G  P    Y   + G      + EA+EL   +V  K  ++ DVLN  +
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV--KRGLEPDVLNYNV 340

Query: 339 ---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
              G   +     A+V F  +  K  VPT+++ ++L   LC   +   + ++   +  + 
Sbjct: 341 LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +YN+++  LC  GR+ EA GV+  M +KG+ P++  YN++M+  C  + +  AK
Sbjct: 401 QPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAK 460

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++++M  SG   ++  YN+LI+ + +   ++ A+ LF  M  K + PD  +Y SL++GL
Sbjct: 461 DIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGL 520

Query: 516 CQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFLVATKLLR----GLS 567
           C    +    E+ ++  +     DV+    +L  F    C+   F  A  L R    G+ 
Sbjct: 521 CNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAF----CKTQPFDKAISLFRQIVEGIW 576

Query: 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKWI--QESSPTMLQEISAELFASLSSSSYPE 625
            D     +H I + +L    +++MA + +K +     SP  +Q  +  + A     S+ E
Sbjct: 577 PDF--YTNHAI-VDNLCKGEKLKMAEDALKHLLMHGCSPN-VQTYTILINALCKDGSFGE 632

Query: 626 PILLL 630
            +LLL
Sbjct: 633 AMLLL 637



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 193/448 (43%), Gaps = 18/448 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++       +   +  +L ++    +  D   +  +I +L +     +A  V   
Sbjct: 231 VTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAM 290

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +    E       N+L+    S   +  A ++F+ M  RG+E   + + V I  +C+   
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT-- 348

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKP 259
                 M+DE       + N +++  +     +I G C   R+    K+LDE+      P
Sbjct: 349 -----KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y I+ +     G + E   VL    K GV P    Y   + G  +   +  AK++ 
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 320 EVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             +V  K  ++ D+LN  +   G   +     AIV F  M  K  +P +++ ++L   LC
Sbjct: 464 NRMV--KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              +   + E+   +  +    D+ +YN+++   C +    +A  + +++  +G+ PD  
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFY 580

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
             +++++  C+ + L+ A+     +   GCS N++TY ILI+   + G    A+ L   M
Sbjct: 581 TNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKM 640

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAA 524
            +    PDA T+  ++  L Q      A
Sbjct: 641 EDNDRPPDAITFEIIIGVLLQRNETDKA 668



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 162/385 (42%), Gaps = 10/385 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++++       ++    +  ++    +  D   Y  +I    + K   +A  +F E
Sbjct: 301 VTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKE 360

Query: 145 VKFNC-EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +   C +++ P I   NSL+  L + G I +  K+ DEM         + + + I   C+
Sbjct: 361 L---CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++ + L +L  + K+   +    V    ++ G+C    V  A  + + +     +PD 
Sbjct: 418 EGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDI 475

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y ++   +     V E  V+ K+ R   + P    Y   I GL    RI   +EL + 
Sbjct: 476 LNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDE 535

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     + D    N L+ +     P   AI  F  ++E G  P   T   +  NLCK  K
Sbjct: 536 MCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEK 594

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
                +  K L  +    ++++Y ++++ LC  G   EA  ++ +M+     PD   +  
Sbjct: 595 LKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEI 654

Query: 441 LMEACCREDLLRPAKKLWDQMFASG 465
           ++    + +    A+KL ++M A G
Sbjct: 655 IIGVLLQRNETDKAEKLREEMIARG 679



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ F   ++ +G +    T   L   L K  +    + + + +  +    ++  Y+ ++ 
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G + +A G+  ++  +G+  D   YNSL++ CC     +   +L  +M       
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+NILI    + G I  A  +   M ++G  PD  TY +L+EG C   N+  A E+F
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELF 323

Query: 529 NKSV 532
           N+ V
Sbjct: 324 NRMV 327



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +++ G  P L T + +    C      + ++  + L A  Y  D  +Y  +++ L  +G+
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQ 175

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           ++ A  ++QEM++  + P++  Y++L++  C++  +  A  L  Q+   G   +  TYN 
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNS 235

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           LI     VG  +   +L   M+ + V PD  T+  L++ LC+E  +  A
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 1/236 (0%)

Query: 333 VLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           V + L+G++  +    +AI  F  +  KG  P+++T + L      ++ +     +   +
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             + Y  ++ ++N +++  C +G + +A    Q +  +G   D   Y +L+    +   +
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQI 176

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + A  L  +M  S    NL  Y+ LI    + G +  AL L   + E+G+  DA TY SL
Sbjct: 177 KAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSL 236

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           ++G C     Q   ++  K V  +V       +  + +LC+ G  L A  +L  +S
Sbjct: 237 IDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMS 292



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 94/215 (43%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+     P  S    L   + +       + ++  L +      + ++ ++++
Sbjct: 39  AVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILIN 98

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                     A+ ++  + + G  P++  +N+++   C   ++  A      + A G   
Sbjct: 99  CYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF 158

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  TY  LI+  S+ G+I+ AL L   M +  V P+   Y++L++GLC++  +  A  + 
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++     ++L     ++ +   C  G +   T+LL
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 61/154 (39%)

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C    + +A      M R    P  S ++ L+ A  R      A  L+ Q+ + G S ++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+ ILI+ +        A  L   +L+ G  P+  T+ +++ G C    +  A +    
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            +    +  +    T +  L + G    A  LL+
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQ 184


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 226/498 (45%), Gaps = 9/498 (1%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           FN      N T   + ++ IL SL  ++  +   S+ +Q+++N I  D   +  +I    
Sbjct: 57  FNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFS 116

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           Q      +FSVF ++     D      N+L+  L   G+I  AL   D++  +G     +
Sbjct: 117 QLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQV 176

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVL 249
            +G  I   C   K+G++ + L  +++ +  ++   +V+  +II   CK K V +AF + 
Sbjct: 177 SYGTLINGLC---KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLY 233

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            ++  +   PD      +   F +MG + E   +L K     + PR   +   +     E
Sbjct: 234 SQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKE 293

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLS 366
            ++ EAK +  V +     +D    N+L+     V  I+    I  F+ M  +G +  + 
Sbjct: 294 GKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDI--FDSMASRGVIANVQ 351

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           + + +   LCK    DE V +++ +       ++ +YN ++  L   G++     ++ EM
Sbjct: 352 SYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEM 411

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             +G  P++  YNS+++A C+   +  A  L   +   G   ++ TY +LI    + G++
Sbjct: 412 HDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKL 471

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           E A ++F ++L KG   D  TYT +++G C +    AA  + +K  ++  +         
Sbjct: 472 EDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIV 531

Query: 547 MISLCRRGHFLVATKLLR 564
           ++SL  +    +A KLLR
Sbjct: 532 ILSLFEKDENDMAEKLLR 549



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 183/445 (41%), Gaps = 42/445 (9%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           I+ SL++ K+   A S+  +++ N         N L+   +  G    +  +F ++  +G
Sbjct: 76  ILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKG 135

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            + + I F   I   C    + Q L+  D+V  +   +    V    +I+G CK  R+  
Sbjct: 136 FDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHL--DQVSYGTLINGLCKVGRITA 193

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           A ++L  +  +  +P+ + Y ++ +     KL+   F+    +  KR   ++P       
Sbjct: 194 ALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR---ISPDDFTCNS 250

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            I G  +  ++ EA  L               L+ +I  + +I+PR              
Sbjct: 251 LIYGFCIMGQLKEAVGL---------------LHKMI--LENINPR-------------- 279

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
              + T S L    CK  K  E   +  V    D   D+ +YN ++   C    + +A  
Sbjct: 280 ---MYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKD 336

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +   M  +G+  +V  Y +++   C+  ++  A  L+++M       N+ TYN LI    
Sbjct: 337 IFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLG 396

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           ++G+I   L+L   M ++G  P+  TY S+L+ LC+  ++  A  +     +  +     
Sbjct: 397 KLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMY 456

Query: 542 ILSTFMISLCRRGHFLVATKLLRGL 566
             +  +  LC+ G    A K+   L
Sbjct: 457 TYTVLIKGLCQSGKLEDAQKVFEDL 481



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/462 (21%), Positives = 188/462 (40%), Gaps = 66/462 (14%)

Query: 33  LLEQTLHQLGLRDSLSPSLVARVI----NPYLLTHHSL------------ALGFFNWASQ 76
           +L     QLGL +SLS S+  +++    +P  +T ++L            AL F +    
Sbjct: 110 ILINCFSQLGL-NSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVA 168

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q  F    +SY +++  L    +I A   +LK+V    +  ++ +Y  II ++ + K   
Sbjct: 169 Q-GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVN 227

Query: 137 KAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            AF +++++    + I P+   CNSL+      G +  A+ +  +M    +      F +
Sbjct: 228 DAFDLYSQMV--AKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSI 285

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +  FC+  K+ +   ML    K++  +I   V    ++ G+C  K + +A  + D +  
Sbjct: 286 LVDAFCKEGKVKEAKMMLGVTMKKD--IILDVVTYNSLMDGYCLVKEINKAKDIFDSMAS 343

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI-C 313
           R    +  +Y  +      +  V E   + ++ R   + P    Y   I GL    +I C
Sbjct: 344 RGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISC 403

Query: 314 EAKELGEVIVSGK---FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             K + E+   G+       + +L+AL  +   +D   AI     + ++G  P + T + 
Sbjct: 404 VLKLVDEMHDRGQPPNIITYNSILDALCKN-HHVD--KAIALLTNLKDQGIRPDMYTYTV 460

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI------- 423
           L K LC+  K ++  +V++ L    Y  D+ +Y VM+   C  G    A  ++       
Sbjct: 461 LIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNG 520

Query: 424 ----------------------------QEMKRKGLDPDVSF 437
                                       +EM  +GL  + S+
Sbjct: 521 CIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKSY 562



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           +  K   P +  +N ++ +  +      A  L  QM  +G   +  T+NILI+ FS++G 
Sbjct: 61  LHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGL 120

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
              +  +F  +L+KG  P+A T+ +L++GLC + ++  A    +K V     L +    T
Sbjct: 121 NSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGT 180

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMAIE 594
            +  LC+ G    A +LL+ +   L   ++  + +++ ++  A+ V  A +
Sbjct: 181 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFD 231


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 205/418 (49%), Gaps = 5/418 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I   I+  N ++A  + +E+      +     N+++  +A  G +  A+ +F+EM
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G+E  T  + + I  + ++  + +   +L E++ R+  +        ++I G C   
Sbjct: 408 LMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK--LTPSPFTYSVLISGLCHSS 465

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDY 299
            +++A +VLD++     KP+   Y  + + + +  S +E  + +LK     GV P    Y
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAY-VQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIE 358
              I+GL   +++ EAK L   +       +     A I   S S + + A  +F  M+ 
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G VP     + L K  C    + E +  +K +       D+ +Y+ ++  L  +G+ +E
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKE 644

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A GV  +  + G+ PDV  YNSL+   C+E  +  A +L+D+M  +G + N+  YN LI+
Sbjct: 645 AMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN 704

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
              ++GE+  A  LF  + EK + PD  TY+++++G C+  NL  AF++F++ ++  +
Sbjct: 705 GLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/568 (20%), Positives = 226/568 (39%), Gaps = 49/568 (8%)

Query: 80   FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
             T SP +Y  ++  L  S  +   + VL Q+  N +  +  +Y  +I + +Q    + A 
Sbjct: 447  LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506

Query: 140  SVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
             +   +  N   + P++ C N L+  L     ++ A  +  +M  +G++ +   +G FI 
Sbjct: 507  ELLKIMIAN--GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 198  KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             + ++ ++        ++    + ++  +VI  ++I G C      EA      +  +  
Sbjct: 565  LYSKSGEIQVAERYFKDML--SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 258  KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
             PD  AY  +       G   E   V  K  K GV P    Y   I G   E  I +A +
Sbjct: 623  IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682

Query: 318  LGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            L + ++      +  V N LI  +  + +   A   F+ + EK  VP + T S +    C
Sbjct: 683  LYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYC 742

Query: 377  KRNKSDELVEVY-----KVLSANDYF-----------------------------TDMES 402
            K     E  +++     K +S + Y                                + +
Sbjct: 743  KSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSA 802

Query: 403  YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            +N ++   C  G++ EA  +  +M  K L P++  Y  L++A  + +++  A++L+  M 
Sbjct: 803  FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 862

Query: 463  ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
                  N  TY  L+  ++++G     + LF +M  +G+A DA  Y  +    C+E    
Sbjct: 863  TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 922

Query: 523  AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHVIL 579
             A ++ NKS+   + L   +    +  LC+        +LL  +  +   L     + +L
Sbjct: 923  EALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLL 982

Query: 580  LKSLADAREVEMA-----IEHIKWIQES 602
            L       E E +     ++ + W+  S
Sbjct: 983  LGFYKSGNEDEASKVLGVMQRLGWVPTS 1010



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 1/328 (0%)

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I G C+   V+EA +V   +  +   PD   Y ++ + F       E +++ +     G+
Sbjct: 283 IGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGL 342

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIV 351
            P    Y   I G I E  I EA  + + +++    ++    NA+IG ++     + A+ 
Sbjct: 343 NPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMS 402

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            FN M+  G  P   T + L     K +   +  E+   + A        +Y+V++S LC
Sbjct: 403 LFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLC 462

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            S  L++A  V+ +M R G+ P+V  Y +L++A  +E     A +L   M A+G   +L 
Sbjct: 463 HSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLF 522

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            YN LI       ++E A  L  +M EKG+ P+A TY + +    +   +Q A   F   
Sbjct: 523 CYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDM 582

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVA 559
           ++  ++    I +  +   C  G+ + A
Sbjct: 583 LSSGIVPNNVIYTILIKGHCDVGNTVEA 610



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 2/243 (0%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +EK   P L T +     LC+    DE +EV K++       D  +Y ++V   C   R 
Sbjct: 268 MEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRS 327

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           +EA  + + M   GL+P+   Y +L++   +E  +  A ++ D+M   G   N+ TYN +
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I   ++ GE+  A+ LF+ ML  G+ PD  TY  L++G  +  ++  A E+  +     +
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIE 594
             +    S  +  LC       A ++L  +  +    +  +   L+K+       EMAIE
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 595 HIK 597
            +K
Sbjct: 508 LLK 510


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 224/484 (46%), Gaps = 17/484 (3%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--LASDGYIDNALK 175
           D   Y  II  L +     +A  +  E+    + + P++    + V  L   G +D A +
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTE--KGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +F +M  RG   +T+ +   I   C++  + +   +L+E+  +     N  +    I+ G
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDN--ITYNTILSG 124

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK----KRKLG 291
            C+  +V EA +  D +  R   PD +AY  + +     G V E   + K      RK  
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK-- 182

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA-LIGSVSSIDPRSAI 350
           VAP    Y   I G     +  EA +L + +++  +  D    N+ L+G     +   A 
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 242

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F  M++ G  P  +T S +    C+       +E+Y+ ++   +  D+   N ++  L
Sbjct: 243 EMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDML 302

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + ++ +A+ V++EM + G  PDV  YN L++  C+ +L+  A +L+  M  +GC+ ++
Sbjct: 303 CKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 362

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +Y+++++   +  ++  A  LF  M+E+ + PD  T+  L++GLC+   L  A ++ + 
Sbjct: 363 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDV 422

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
              H+V+      +T M  LCR      A +L + +      +D   H I+L  L   RE
Sbjct: 423 MSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL--CRE 480

Query: 589 VEMA 592
            ++A
Sbjct: 481 GKLA 484



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 209/449 (46%), Gaps = 7/449 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           +++++ L   G +  AL+M +EM+ +GV      + + + + C   K+ +   +  ++ +
Sbjct: 14  STIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIE 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  S    +V    +I+G CK + +E A+K+L+E+  +  +PD I Y  +      MG V
Sbjct: 74  RGCSA--NTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV 131

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
            E +         G +P    Y   +  L  E ++ EA  L + +      +  D++  N
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYN 191

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI     ++    A+  F  +I KG +P   T +++   L +++  DE  E++K +  +
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               +  +Y++++S  C  G +     + +EM  K   PDV   N++++  C+   +  A
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDA 311

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            K+ ++M   G   ++ TYNIL+    +   ++ A  LF  M++ G APD  +Y+ +L G
Sbjct: 312 HKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNG 371

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGH 572
           LC+   +  A  +F++ +   ++      +  M  LC+ G    A  LL  +S    L  
Sbjct: 372 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQE 601
             +   L+  L   +  + A+   +++ E
Sbjct: 432 GVTCTTLMHGLCRDKRTDEAVRLFQYMVE 460



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/521 (20%), Positives = 209/521 (40%), Gaps = 42/521 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I+  L  + +++  D +  ++     + ++  Y  +I  L + +N ++A+ +  E+
Sbjct: 47  TYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEM 106

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                +      N++L+ L   G +  A + FD M  RG     + +   +    +  K+
Sbjct: 107 ASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKV 166

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +   +   +  +    +    +I GFC+ ++ +EA K+  ++  +   PD + Y 
Sbjct: 167 AEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYN 226

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +        ++ E E + KK    G AP    Y   + G      +    EL E +   
Sbjct: 227 SILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK 286

Query: 326 KFTIDDDVLNALIG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +F+ D  + NA+I        +D    +     M + G VP + T + L   LCK N  D
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKV--LEEMSKIGAVPDVVTYNILLDGLCKTNLVD 344

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +  E++  +  N    D+ SY+V+++ LC + ++ +A  +   M  + L PDV  +N LM
Sbjct: 345 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILM 404

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV- 501
           +  C+   L  AK L D M       +  T   L+         + A+RLF  M+EKG  
Sbjct: 405 DGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTV 464

Query: 502 ------------------------------------APDATTYTSLLEGLCQETNLQAAF 525
                                               +PD  TYT+L+  L +   +  A 
Sbjct: 465 ADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAV 524

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + F +             +T M  L ++G  + A +L + +
Sbjct: 525 DYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 53/461 (11%)

Query: 65  SLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKV--NKITLDSS 120
           S A  FF+     P+  +SP  ++Y+ +L +L    ++     + K + +   K+  D  
Sbjct: 132 SEAKQFFD---SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I    + + T +A  +F +V            NS+L  LA    +D A +MF +M
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   +   + + +   C    + + L + +E+ ++  S     ++   +I   CK K
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFS--PDVLLCNAVIDMLCKAK 306

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +V++A KVL+E+                                    K+G  P    Y 
Sbjct: 307 KVDDAHKVLEEMS-----------------------------------KIGAVPDVVTYN 331

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNALIGSVSSIDPRSAIVFFNFM 356
             + GL     + +A EL   +V      D      VLN L  +    D R   V F+ M
Sbjct: 332 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR---VLFDRM 388

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           IE+  VP + T + L   LCK  K DE  ++  V+S ++   D  +   ++  LC   R 
Sbjct: 389 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRT 448

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC--SGNLKTYN 474
            EA  + Q M  KG   DV  +N ++   CRE  L  A   +  M  S    S ++ TY 
Sbjct: 449 DEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYT 508

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L++   E G ++ A+  F  M   G APD   Y +L+ GL
Sbjct: 509 TLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 2/211 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M EKG  P + T S +   LCK  K  E +E+ + ++      D+ +Y ++V  LC +G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  +  +M  +G   +   YN+L+   C+++ +  A KL ++M + G   +  TYN 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           ++S    +G++  A + F +M  +G +PD   Y  LL+ L +E  +  A+ +F      D
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 536 VMLARSILS--TFMISLCRRGHFLVATKLLR 564
             +A  +++  T +   CR      A KL +
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFK 211



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG +PDV  Y++++   C+   +  A ++ ++M   G + ++ TY I++ +    G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ A  LFH M+E+G + +   Y +L+ GLC++ N++ A+++  +  +          +T
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 546 FMISLCRRGHFLVATKLL-----RGLSSDL 570
            +  LCR G    A +       RG S D+
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDV 150



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 79/193 (40%), Gaps = 4/193 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  +L  L  + +++    +  ++   K+  D   +  ++  L +     +A  + + 
Sbjct: 363 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDV 422

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +  ++ P+   C +L+  L  D   D A+++F  M  +G     +   + +   C  
Sbjct: 423 MSEH--NVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCRE 480

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            KL Q L     + K +       V    +++   +  RV++A     ++    C PD++
Sbjct: 481 GKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYV 540

Query: 263 AYRIVAEEFKLMG 275
           AY  +    +  G
Sbjct: 541 AYNTLMNGLRKQG 553


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 218/503 (43%), Gaps = 58/503 (11%)

Query: 51  LVARVINPYLLTHHSLALGFFNW-----ASQQPNFTHSP-----LSYHSILKSLSLSRQI 100
           LV +   P ++    L  GFFN+     AS+      S       +Y++++       QI
Sbjct: 104 LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQI 163

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEICNS 159
            A   VL ++K      D   Y  +I SL   +    A +V +++   NC    P +   
Sbjct: 164 EAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM---PTVITY 220

Query: 160 LLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            + + A+  +G I+ A+K+ +EM  RG+      +                         
Sbjct: 221 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA----------------------- 257

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                         II G CK   VE A +++  L  + C+PD I+Y I+   F   G  
Sbjct: 258 --------------IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKW 303

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E ++ +    G  P    Y   I  L    RI EA  + +V++  + T D    + L
Sbjct: 304 DEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPL 363

Query: 338 IGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I ++     +D   AI   ++MI  G +P +   + +   LCK   +++ +E++  L   
Sbjct: 364 ISALCKEGRLD--LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGM 421

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ SYN M+S L + G    A G++  M  KG+DPD   YNSL+   CR+ L+  A
Sbjct: 422 GCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEA 481

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L D M  SG    + +YNI++    +V  I+ A+ +F  M+EKG  P+ TTY  L+EG
Sbjct: 482 IGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEG 541

Query: 515 LCQETNLQAAFEVFNKSVNHDVM 537
           +        A E+ N   + DV+
Sbjct: 542 IGFAGWRTEAMELANSLFSRDVI 564



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 38/344 (11%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           ++   +I GF   K +E+A +V++ L     +PD  AY  V   F  +  +     VL +
Sbjct: 114 ILCTKLIKGFFNFKNIEKASRVMEILE-SHTEPDVFAYNAVISGFCKVNQIEAATQVLNR 172

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
            +  G  P    Y   I  L      C  ++LG                           
Sbjct: 173 MKARGFLPDIVTYNIMIGSL------CNRRKLG--------------------------- 199

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+   + ++    +PT+ T + L +        +E +++ + + A     DM +YN +
Sbjct: 200 -LALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 258

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  +C  G +  A  +I  +  KG +PDV  YN L+ A   +      +KL  +MF+ GC
Sbjct: 259 IRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 318

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  TY+ILIS     G I+ A+ +   M+EK + PD  +Y  L+  LC+E  L  A  
Sbjct: 319 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 378

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL---LRGLS 567
           + +  +++  +      +T + +LC+ G+   A ++   LRG+ 
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + E+     +PDV  YN+++   C+ + +  A ++ ++M A G   ++ TYNI+I     
Sbjct: 135 VMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN 194

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++  AL +   +L     P   TYT L+E    E  +  A ++  +      MLAR +
Sbjct: 195 RRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEE------MLARGL 248

Query: 543 L------STFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSL 583
           L      +  +  +C+ G    A +L+  L+S     D  S+ ILL++ 
Sbjct: 249 LPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAF 297


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 226/514 (43%), Gaps = 16/514 (3%)

Query: 82  HSPLS---YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           H P S   +  +L S++  +  + + S+  Q+    +  +      +I S         A
Sbjct: 51  HPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFA 110

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           FSV  ++        P    +L+  L  +G I  AL +FD+M   G + + + +G  I  
Sbjct: 111 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 170

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            C   K+G   + +  +R  E       V I   II   CK ++V EAF +  ++  +  
Sbjct: 171 LC---KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 227

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD   Y  +      +        +L +     + P    +   +  L  E ++ EA E
Sbjct: 228 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 287

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + ++++      D      L+ G     +   A+  F+ M+ KG  P + + + L    C
Sbjct: 288 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 347

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K +K D+ + +++ +   ++  D ++YN ++  LC  GRL++A  +  EM  +G  PD+ 
Sbjct: 348 KIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLV 407

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ L+++ C+   L  A  L   + AS  + +++ YNI+I      GE+E A  LF N+
Sbjct: 408 TYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 467

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
             KG+ P   TY  ++ GLC+   L  A ++F +   +D        +T      +    
Sbjct: 468 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 527

Query: 557 LVATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
           L A +LL     RG S+D+    +  +L++ L+D
Sbjct: 528 LRAIQLLEEMLARGFSADVS---TTTLLVEMLSD 558



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 205/448 (45%), Gaps = 13/448 (2%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
             QP+    P ++ ++++ L +  +I     +  ++       +   Y  +I  L +  N
Sbjct: 121 GHQPD----PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN 176

Query: 135 TQKAFSVFNEV-KFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           T  A  +   + + NC+   P+  I  S++  L  D  +  A  +F +M  +G+      
Sbjct: 177 TSAAIRLLRSMEQGNCQ---PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   +   C   +   V ++L+++   +  ++   VI   ++   CK  +V EA +++D 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSK--ILPDVVIFSTVVDALCKEGKVTEAHEIVDM 291

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R  +PD + Y  + +   L   + E   V     + G AP    Y   I G     +
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
           I +A  L E +   ++  D    N L+  +  +   + AI  F+ M+ +G++P L T S 
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L  +LCK    +E + + K + A++   D++ YN+++  +C +G L  A  +   +  KG
Sbjct: 412 LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 471

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P V  YN ++   C+  LL  A KL+ +M  + CS +  TYN +   F +  E   A+
Sbjct: 472 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 531

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           +L   ML +G + D +T T L+E L  +
Sbjct: 532 QLLEEMLARGFSADVSTTTLLVEMLSDD 559



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 2/238 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN ++     P++   + L  ++ K      ++ +   + +     ++ + N++++
Sbjct: 40  ALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILIN 99

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   R+  A+ V+ ++ + G  PD + + +L+   C E  +  A  L+D+M   G   
Sbjct: 100 SFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQP 159

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI+   +VG    A+RL  +M +    PD   YTS+++ LC++  +  AF +F
Sbjct: 160 NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLF 219

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           ++ V   +       ++ + +LC    +   T LL  + +     D  V++  ++ DA
Sbjct: 220 SQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD--VVIFSTVVDA 275


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 228/485 (47%), Gaps = 25/485 (5%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L+ +G I  AL +  EM    V+ + + +   I   C++  +   L +  ++ +R
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              ++  +V    +I G C   R +E  ++L ++      PD   + I+ +     G + 
Sbjct: 225 --GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E + VL    K G  P    Y   + G      + EA+EL   +V  K  ++ DVLN  +
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV--KRGLEPDVLNYNV 340

Query: 339 ---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
              G   +     A+V F  +  K  VPT+++ ++L   LC   +   + ++   +  + 
Sbjct: 341 LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +YN+++  LC  GR+ EA GV+  M +KG+ P++  YN++M+  C  + +  AK
Sbjct: 401 QPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAK 460

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++++M  SG   ++  YN+LI+ + +   ++ A+ LF  M  K + PD  +Y SL++GL
Sbjct: 461 DIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGL 520

Query: 516 CQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFLVATKLLR----GLS 567
           C    +    E+ ++  +     DV+    +L  F    C+   F  A  L R    G+ 
Sbjct: 521 CNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAF----CKTQPFDKAISLFRQIVEGIW 576

Query: 568 SDLGHSDSHVILLKSLADAREVEMAIEHIK--WIQESSPTMLQEISAELFASLSSSSYPE 625
            D     +H I + +L    +++MA + +K   +   SP  +Q  +  + A     S+ E
Sbjct: 577 PDF--YTNHAI-VDNLCKGEKLKMAEDALKHLLMHGCSPN-VQTYTILINALCKDGSFGE 632

Query: 626 PILLL 630
            +LLL
Sbjct: 633 AMLLL 637



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 196/450 (43%), Gaps = 22/450 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++       +   +  +L ++    +  D   +  +I +L +     +A  V   
Sbjct: 231 VTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAM 290

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    E   P+I   N+L+    S   +  A ++F+ M  RG+E   + + V I  +C+ 
Sbjct: 291 MSKRGEK--PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIREC 257
                   M+DE       + N +++  +     +I G C   R+    K+LDE+     
Sbjct: 349 -------KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD + Y I+ +     G + E   VL    K GV P    Y   + G  +   +  AK+
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 318 LGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +   +V  K  ++ D+LN  +   G   +     AIV F  M  K  +P +++ ++L   
Sbjct: 462 IFNRMV--KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC   +   + E+   +  +    D+ +YN+++   C +    +A  + +++  +G+ PD
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPD 578

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
               +++++  C+ + L+ A+     +   GCS N++TY ILI+   + G    A+ L  
Sbjct: 579 FYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLS 638

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            M +    PDA T+  ++  L Q      A
Sbjct: 639 KMEDNDRPPDAITFEIIIGVLLQRNETDKA 668



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 162/385 (42%), Gaps = 10/385 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++++       ++    +  ++    +  D   Y  +I    + K   +A  +F E
Sbjct: 301 VTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKE 360

Query: 145 VKFNC-EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +   C +++ P I   NSL+  L + G I +  K+ DEM         + + + I   C+
Sbjct: 361 L---CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++ + L +L  + K+   +    V    ++ G+C    V  A  + + +     +PD 
Sbjct: 418 EGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDI 475

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y ++   +     V E  V+ K+ R   + P    Y   I GL    RI   +EL + 
Sbjct: 476 LNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDE 535

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     + D    N L+ +     P   AI  F  ++E G  P   T   +  NLCK  K
Sbjct: 536 MCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEK 594

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
                +  K L  +    ++++Y ++++ LC  G   EA  ++ +M+     PD   +  
Sbjct: 595 LKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEI 654

Query: 441 LMEACCREDLLRPAKKLWDQMFASG 465
           ++    + +    A+KL ++M A G
Sbjct: 655 IIGVLLQRNETDKAEKLREEMIARG 679



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ F   ++ +G +    T   L   L K  +    + + + +  +    ++  Y+ ++ 
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G + +A G+  ++  +G+  D   YNSL++ CC     +   +L  +M       
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+NILI    + G I  A  +   M ++G  PD  TY +L+EG C   N+  A E+F
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELF 323

Query: 529 NKSV 532
           N+ V
Sbjct: 324 NRMV 327



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +++ G  P L T + +    C      + ++  + L A  Y  D  +Y  +++ L  +G+
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQ 175

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           ++ A  ++QEM++  + P++  Y++L++  C++  +  A  L  Q+   G   +  TYN 
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNS 235

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           LI     VG  +   +L   M+ + V PD  T+  L++ LC+E  +  A
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 1/236 (0%)

Query: 333 VLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           V + L+G++  +    +AI  F  +  KG  P+++T + L      ++ +     +   +
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             + Y  ++ ++N +++  C +G + +A    Q +  +G   D   Y +L+    +   +
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQI 176

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + A  L  +M  S    NL  Y+ LI    + G +  AL L   + E+G+  DA TY SL
Sbjct: 177 KAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSL 236

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           ++G C     Q   ++  K V  +V       +  + +LC+ G  L A  +L  +S
Sbjct: 237 IDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMS 292



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 94/216 (43%)

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+  FN M+     P  S    L   + +       + ++  L +      + ++ +++
Sbjct: 38  DAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILI 97

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +          A+ ++  + + G  P++  +N+++   C   ++  A      + A G  
Sbjct: 98  NCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYL 157

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  TY  LI+  S+ G+I+ AL L   M +  V P+   Y++L++GLC++  +  A  +
Sbjct: 158 FDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGL 217

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            ++     ++L     ++ +   C  G +   T+LL
Sbjct: 218 CSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 61/154 (39%)

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C    + +A      M R    P  S ++ L+ A  R      A  L+ Q+ + G S ++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+ ILI+ +        A  L   +L+ G  P+  T+ +++ G C    +  A +    
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            +    +  +    T +  L + G    A  LL+
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQ 184


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 212/457 (46%), Gaps = 11/457 (2%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H P   ++ ++++ L +  +I     +  ++       +   Y  +I  L +  N++ A 
Sbjct: 140 HQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAI 199

Query: 140 SVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            +    V+ NCE   P +   N+++  L  D  ++ AL +F EM  +G+  +   +   I
Sbjct: 200 RLLRSMVQKNCE---PNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSII 256

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+ ++   V ++++E+   ++ ++   VI   ++   CK   V  A  V+D +  R 
Sbjct: 257 HGLCKFSEWKHVATLMNEMV--DSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRG 314

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            +PD + Y  + +   L   + E + V     + G AP    Y   I G    +RI +A 
Sbjct: 315 VEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAM 374

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L E +   +   +    N LI  +  +   R AI  F+ M+  G++P L T   L   L
Sbjct: 375 YLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYL 434

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK    D+ + + K +  ++   D++SYN+++  +C  G L  A  +   +  KGL PDV
Sbjct: 435 CKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDV 494

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  ++   C + LL  A KL+ +M   GCS +  TYN++   F    E   A++L   
Sbjct: 495 WTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQE 554

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           ML +G + DA+T T ++E L  +   Q+  ++ ++ V
Sbjct: 555 MLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFV 591



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 219/488 (44%), Gaps = 43/488 (8%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D    +  ++   G +  T  F   I   C   K+G+ L + D++   E    NG    
Sbjct: 125 VDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG-EGFQPNGVTYG 183

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            LI HG CK      A ++L  +  + C+P+ I Y  + +       V E   +  +   
Sbjct: 184 TLI-HGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIA 242

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP--R 347
            G++P  + Y   I GL      C+  E   V       +D  ++  ++   + +D   +
Sbjct: 243 KGISPNVSTYNSIIHGL------CKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK 296

Query: 348 SAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             +V       + MI++G  P + T + L    C R++ DE  +V+  +       ++ S
Sbjct: 297 EGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVIS 356

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y+ +++  C   R+ +A  + +EM ++ L P++  YN+L+   C    LR A  L+ +M 
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMV 416

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           ASG   +L TY IL+    +   ++ A+ +   +    +APD  +Y  +++G+C+   L+
Sbjct: 417 ASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELE 476

Query: 523 AAFEVFN----KSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSD--S 575
           AA ++F+    K ++ DV        T MI+ LC +G    ATKL R +++D    D  +
Sbjct: 477 AAGDLFSSLSSKGLHPDVWTY-----TIMINGLCLQGLLAEATKLFREMNTDGCSPDDCT 531

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
           + ++ +      E   AI+           +LQE+    F++ +S+     I L++  L 
Sbjct: 532 YNLITRGFLRNNETLSAIQ-----------LLQEMLGRGFSADAST-----ITLIVEMLS 575

Query: 636 EKCLDSEI 643
           +  LD  +
Sbjct: 576 DDGLDQSV 583



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 188/428 (43%), Gaps = 9/428 (2%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID AL  F+ M H     S + F   +           VLS+     K+ +S+   S + 
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSL----SKQMDSLGIPSDVY 110

Query: 230 VL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            L  +I+ FC   RV+  F VL ++     +PD   +  +     + G + E   +  K 
Sbjct: 111 TLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKM 170

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDP 346
              G  P    Y   I GL        A  L   +V      +    N +I  +      
Sbjct: 171 VGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQV 230

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+  F+ MI KG  P +ST +++   LCK ++   +  +   +  +    ++  +  +
Sbjct: 231 NEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTL 290

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V  LC  G +  A+ V+  M ++G++PDV  Y +LM+  C    +  A K++D M   GC
Sbjct: 291 VDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGC 350

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N+ +Y+ LI+ + ++  I+ A+ LF  M ++ + P+  TY +L+ GLC    L+ A  
Sbjct: 351 APNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIA 410

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-SSDLGHS-DSHVILLKSLA 584
           +F++ V    +         +  LC+  H   A  +L+ +  S+L     S+ I++  + 
Sbjct: 411 LFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMC 470

Query: 585 DAREVEMA 592
              E+E A
Sbjct: 471 RVGELEAA 478


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/542 (23%), Positives = 243/542 (44%), Gaps = 36/542 (6%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L + FF WA +Q  ++H+   Y ++ + L         + +L+++  +    D  V R +
Sbjct: 116 LCVRFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGED----DREVLRRL 171

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMS 181
           +  L++       +    E     +D G  P     N+L+ VLAS G ++   ++  EMS
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231

Query: 182 HRG--VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
             G  ++ STIG+  F    C+  +    L+ML+    +E+  ++ +V+   +I G  + 
Sbjct: 232 ASGFCMDRSTIGY--FAQALCKVGRWADALNMLE----KEDFNLD-TVLCTQMISGLMEA 284

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
               EA   L  +R   C P+ + YR +   F         + ++      G  P  + +
Sbjct: 285 SLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLF 344

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIV-----F 352
              + G         A +L   + +          N  IGS+   +  P + ++      
Sbjct: 345 NSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKV 404

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +  M+    V      +N S+ LC   K ++  ++ K +    +  D  +Y  +++FLC 
Sbjct: 405 YEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQ 464

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           + ++ +++ + QEMKR G++PDV  Y  L+++ C+  L+  A+  +D+M + GCS N+ T
Sbjct: 465 AKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVT 524

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-- 530
           Y  L+  + +  ++  A  +FH M++    P+A TY++L++GLC+   +Q A EV+ K  
Sbjct: 525 YTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLI 584

Query: 531 ----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
               +V  D     +   T   ++   G       L+ GL      SD+H +L   LA  
Sbjct: 585 GTSGNVESDFYFEGNDTCTIAPNVVTYG------ALIDGLCKAQKVSDAHELLDAMLAAG 638

Query: 587 RE 588
            E
Sbjct: 639 CE 640



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/521 (21%), Positives = 204/521 (39%), Gaps = 59/521 (11%)

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
            N   S L +++ N    +   YR ++   ++ K       + N +     +  P + NS
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNS 346

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+    + G    A K+F+ M+  G     + + +FI   C   +L     +LD V K  
Sbjct: 347 LVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNA-ELLDLVEKVY 405

Query: 220 NSMINGS--------------------------VIAVLIIHGF--------------CKG 239
             M+  S                          ++  ++  GF              C+ 
Sbjct: 406 EEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQA 465

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K+VE++F +  E++     PD   Y I+ + F   G + +      + R +G +P    Y
Sbjct: 466 KKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTY 525

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIVFFNFMI 357
              +   +  +++ +A ++   +V      +    +ALI  +       ++  V+   + 
Sbjct: 526 TALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIG 585

Query: 358 EKGRV---------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             G V               P + T   L   LCK  K  +  E+   + A     +   
Sbjct: 586 TSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIV 645

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y+ ++   C  G++  A  V   M + G  P V  Y SL++   ++  L  A K+  +M 
Sbjct: 646 YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEML 705

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              C+ N+ TY  +I   S+VGEIE AL L   M EKG +P+  TYT+L++GL +     
Sbjct: 706 NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           A+ ++F K +N        +    +I+ C     L    LL
Sbjct: 766 ASLKLF-KQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLL 805



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/480 (21%), Positives = 205/480 (42%), Gaps = 59/480 (12%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           +LK++       D+S Y  +I  L Q K  +K+F +F E+K     + P++     L+  
Sbjct: 439 ILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKR--AGVNPDVYTYTILIDS 496

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV--------------- 208
               G I+ A   FDEM   G   + + +   +  + ++ +L Q                
Sbjct: 497 FCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPN 556

Query: 209 ----------LSMLDEVRK-----------------------RENSMINGSVIAV-LIIH 234
                     L    E++K                        +   I  +V+    +I 
Sbjct: 557 AVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALID 616

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK ++V +A ++LD +    C+P+ I Y  + + F  +G +   + V  +  K G  P
Sbjct: 617 GLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLP 676

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
             + Y   I  +  + R+  A ++   +++     +     A+I  +S + +   A+   
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLL 736

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M EKG  P + T + L   L K  K+D  ++++K +++     +  +Y V+++  C +
Sbjct: 737 SLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAA 796

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L EA+ ++ EMK       +  Y+  ++   ++ +   +  L ++M +         Y
Sbjct: 797 GLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFI--ASLGLLEEMESHETVPIAPVY 854

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATT---YTSLLEGLCQETNLQAAFEVFNK 530
            +LI  FS+ G +E AL L   ++E   + + T+   Y SL++ LC  + ++ AF ++ +
Sbjct: 855 GMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTE 914



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 121/296 (40%), Gaps = 18/296 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+      G IDNA ++F  M+  G   S   +   I +  ++ +L   + +L E+  
Sbjct: 647 DALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEML- 705

Query: 218 RENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             N   N +V+    +I G  K   +E+A  +L  +  + C P+ + Y  + +     G 
Sbjct: 706 --NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGK 763

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE---VIVSGKFTIDDDV 333
                 + K+    G AP    YR  I         C A  L E   ++   K T     
Sbjct: 764 ADASLKLFKQMNSKGCAPNYVTYRVLI------NHCCAAGLLDEAHLLLDEMKHTHWPKH 817

Query: 334 LNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           L     +V     +  +++     M     VP       L  +  K  + +  +E++K L
Sbjct: 818 LQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKEL 877

Query: 392 ---SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
              S++   T    Y  ++  LC + ++ EA+ +  EM RKG+ PD+  + SL++ 
Sbjct: 878 VEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKG 933


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 199/437 (45%), Gaps = 10/437 (2%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           +Y  +I +L +  N + A S+ N+V  +          S++     +  +D+A ++F+ M
Sbjct: 230 IYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRM 289

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G E +   +   I   C + ++ + L  + E+  R   +         I+   C   
Sbjct: 290 DEEGCEPNAATYSTLINGLCNSGRVNEALDFISEM-TRHGVLPTVHTFTAPIV-ALCDMG 347

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV--LKKKRKLGVAPRTND 298
           R+E+A+K+  +++ + CKP+   Y  +     + G    R  +    +  + GV P T  
Sbjct: 348 RIEDAWKIFIDMKKKGCKPNVYTYTSL-----ISGQRVSRMAIGLFHRMSRDGVVPNTVT 402

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMI 357
           Y   +  L+    I  A  +  ++       +    N LI    +I D   A+     M+
Sbjct: 403 YNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNML 462

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +    PTL T + + K  C    +D  + V +++ AN    D  SY  ++S  C   ++ 
Sbjct: 463 KGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKME 522

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            A G+  EM  +GL P+   Y +L+   C+++ L  A ++ ++M  SGC  N++TYN+LI
Sbjct: 523 LASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLI 582

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              ++     GA  L   MLE+ ++PD  TY++++ GLC    +  A E+FNK V H  +
Sbjct: 583 HGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCL 642

Query: 538 LARSILSTFMISLCRRG 554
                 S+ + +L + G
Sbjct: 643 PNLHTYSSLIQALGQEG 659



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/488 (20%), Positives = 198/488 (40%), Gaps = 35/488 (7%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L Y+S++ +L     +   +S++ +V  + +  D+  Y  +I    + ++  
Sbjct: 225 QPNL----LIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLD 280

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF +FN +     +      ++L+  L + G ++ AL    EM+  GV  +   F   I
Sbjct: 281 SAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPI 340

Query: 197 WKFCENAKLGQVLSMLDEVRKRE--------NSMINGSVIAVLIIHGFCKGKR------- 241
              C+  ++     +  +++K+          S+I+G  ++ + I  F +  R       
Sbjct: 341 VALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNT 400

Query: 242 ---------------VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                          ++ A  V + +    C P+  +Y  +   +  +G   +   +L  
Sbjct: 401 VTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTN 460

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
             K    P    Y   I G         A  + E++ +     D+     LI     I  
Sbjct: 461 MLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISK 520

Query: 347 RS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A   FN M+++G  P   T + L    CK  K D    + + +  +    ++++YNV
Sbjct: 521 MELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNV 580

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++  L        A  + + M  + + PDV  Y++++   C    +  A +++++M   G
Sbjct: 581 LIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHG 640

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C  NL TY+ LI    + G +E A  +F  + ++G+ PD  TY  ++E       +  AF
Sbjct: 641 CLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAF 700

Query: 526 EVFNKSVN 533
           +   + +N
Sbjct: 701 DFLGEMIN 708



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 210/519 (40%), Gaps = 67/519 (12%)

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQK-AFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           + + K     +VY +   SLI G+   + A  +F+ +  +         N+L+ VL  + 
Sbjct: 357 IDMKKKGCKPNVYTYT--SLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENM 414

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-RENSMINGSV 227
            ID+AL +F+ M   G   +T  +   I  +C      + +SML  + K R    +   V
Sbjct: 415 EIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTL---V 471

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              +II G+C     + A +VL+ ++   C+PD  +Y  +   F  +  +     +  + 
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM 531

Query: 288 RKLGVAPRTNDYREFILGLIVERRI-CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
              G+ P    Y   I G   + ++ C A+ L                            
Sbjct: 532 MDRGLCPNEVTYTALISGYCKDEKLDCAARMLER-------------------------- 565

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                    M   G  P + T + L   L K+N      E+ KV+       D+ +Y+ +
Sbjct: 566 ---------MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTV 616

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC +G +  A  +  +M + G  P++  Y+SL++A  +E  +  A++++ ++   G 
Sbjct: 617 INGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE-------- 518
             +  TY  +I      G+++ A      M+  G  P   TY  L++GL  E        
Sbjct: 677 IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVA 736

Query: 519 -TNLQAAFEVFNKSVNHDVM-------------LARSILSTFMISLCRRGHFLVATKLLR 564
             N  +     ++ +N DV+             L+R +    +  L R G +  A  L R
Sbjct: 737 LPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYR 796

Query: 565 GL--SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            +   S   + D++   L SL  A +V++A++  K + +
Sbjct: 797 SMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSD 835



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 88/180 (48%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ + +   ++G    L T + L   L K N +  +++ Y  +       ++  YN +++
Sbjct: 177 ALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVIN 236

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G +R+A  +I ++ + G+ PD   Y S++   CR   L  A +++++M   GC  
Sbjct: 237 ALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEP 296

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  TY+ LI+     G +  AL     M   GV P   T+T+ +  LC    ++ A+++F
Sbjct: 297 NAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIF 356



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%)

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           M+        + +A   +    ++G    +  Y +L+    + ++       + Q+   G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              NL  YN +I+   + G +  A  + + + + G+ PD  TYTS++ G C+  +L +AF
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           E+FN+          +  ST +  LC  G
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSG 312



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 159/381 (41%), Gaps = 39/381 (10%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LA G FN    +     + ++Y +++       +++    +L+++K +    +   Y   
Sbjct: 523 LASGMFNEMMDR-GLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNV- 580

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNC-----EDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
              LI G   Q  FS   E+   C     E I P++   ++++  L ++G I  AL+MF+
Sbjct: 581 ---LIHGLTKQNNFSGAEEL---CKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFN 634

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           +M   G   +   +   I    +  ++ +   M  E++K+   +I   V  V +I     
Sbjct: 635 KMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQ--GLIPDEVTYVKMIEVCVM 692

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +V+ AF  L E+    C+P    Y ++ +         + E+V  K   L  A  T+ 
Sbjct: 693 SGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL-------QNEMVYHKLVALPNAASTST 745

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF-----F 353
           + + I+           K++  V+ S    +D ++   L  ++ S   RS   F     +
Sbjct: 746 FDDQIIN----------KDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLY 795

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M+ + + P   T  +   +L +  K D  ++V+K +S       +  Y  ++  LC  
Sbjct: 796 RSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQL 855

Query: 414 GRLREAYGVIQEMKRKGLDPD 434
            R +EA  V ++M  + L+ D
Sbjct: 856 HRRKEARFVFEKMLSRALNAD 876


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 193/380 (50%), Gaps = 9/380 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++ VL  +G +  A      M   GV+ + + +   +  +C + ++    ++L  +++
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 218 RE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           ++   +S   GS+I+     G CK  R+EEA K+ +E+  +  +P  + Y  + + F   
Sbjct: 285 QKIEPDSFTYGSLIS-----GMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G++        +  K G++P  + Y   I  L +E+R  EA+ + + I     + D    
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY 399

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI G     + + A +  + M+  G  PT  T ++L   L K+N+  E  +++K +++
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+  +N ++   C++  ++ A+ ++++M R  + PD   +N++M+  CRE  +  
Sbjct: 460 EGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A++L+D+M   G   +  ++N LIS +S  G+I+ A R+ + ML+ G  P   TY +L++
Sbjct: 520 ARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579

Query: 514 GLCQETNLQAAFEVFNKSVN 533
           GLC+      A E+  + V+
Sbjct: 580 GLCKNQEGDLAEELLKEMVS 599



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 203/483 (42%), Gaps = 42/483 (8%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           S V+ ++I S        +AF  F  +K        E CNSLL++       + A  ++ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM    ++ S   F +                                     +I+  CK
Sbjct: 211 EMFRLRIKSSVYTFNI-------------------------------------MINVLCK 233

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             ++++A   +  +     KP+ + Y  +   +   G V   + +L   ++  + P +  
Sbjct: 234 EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFT 293

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I G+  + R+ EA ++ E +V         + N LI G  +  +   A  + + M+
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +KG  PT+ST ++L   L    ++DE   + K +       D  +YN++++  C     +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+ +  EM   G+ P    Y SL+    +++ ++ A  L+ ++ + G   ++  +N LI
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                   ++GA  L  +M    V PD  T+ ++++G C+E  ++ A E+F++     + 
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIE 594
                 +T +    RRG    A + +R    D G +    ++  L++ L   +E ++A E
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFR-VRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 595 HIK 597
            +K
Sbjct: 593 LLK 595



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 176/417 (42%), Gaps = 42/417 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +G    +  +PN     ++Y++I+     S ++ A D++L  +K  KI  DS  Y     
Sbjct: 244 VGHMETSGVKPNI----VTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTY----- 294

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
                                          SL++ +   G ++ A K+F+EM  +G+  
Sbjct: 295 ------------------------------GSLISGMCKQGRLEEASKIFEEMVQKGLRP 324

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           S + +   I  FC    L    +  DE+ K+  S    +  +  +IH     +R +EA  
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNS--LIHALFMEQRTDEAEC 382

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           ++ E++ +   PD I Y I+   +    +  +  ++  +    G+ P    Y   +  L 
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            + R+ EA +L + I S     D  + NALI G  S+ + + A      M      P   
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + + +  C+  K +E  E++  +       D  S+N ++S     G +++A+ V  EM
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              G +P V  YN+L++  C+      A++L  +M + G + +  TY  LI   ++V
Sbjct: 563 LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 140/318 (44%), Gaps = 32/318 (10%)

Query: 295 RTNDYREFILGLIVERRICEAKE----LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           + +D R   L +++  R+   K     L + +  G      ++   L  S   +  +S+I
Sbjct: 93  KLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSI 152

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF +++I               K+ C  N++DE  E +  +        +E+ N ++S  
Sbjct: 153 VF-DYLI---------------KSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLF 196

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
               R   A+ +  EM R  +   V  +N ++   C+E  L+ AK     M  SG   N+
Sbjct: 197 LKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNI 256

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  +   G +E A  +   M  + + PD+ TY SL+ G+C++  L+ A ++F +
Sbjct: 257 VTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDS--HVILLKSL 583
            V   +  +  I +T +   C +G+  +A+      L +G+S  +   +S  H + ++  
Sbjct: 317 MVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQR 376

Query: 584 ADAREVEMAIEHIKWIQE 601
            D  E       IK IQE
Sbjct: 377 TDEAEC-----MIKEIQE 389



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 7/353 (1%)

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R+      S++   +I   C   R +EAF+    ++ +   P       +   F  +   
Sbjct: 143 RDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVL-- 334
               V+  +  +L +      +   I  L  E ++ +AK+ +G +  SG   +  +++  
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG---VKPNIVTY 259

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N ++ G  SS    +A      M  +   P   T  +L   +CK+ + +E  ++++ +  
Sbjct: 260 NTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQ 319

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                    YN ++   C  G L  A     EM +KG+ P +S YNSL+ A   E     
Sbjct: 320 KGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDE 379

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+ +  ++   G S +  TYNILI+ +      + A  L   ML  G+ P   TYTSLL 
Sbjct: 380 AECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLH 439

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            L ++  ++ A ++F K  +  V+    + +  +   C   +   A +LL+ +
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDM 492



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 139/306 (45%), Gaps = 13/306 (4%)

Query: 51  LVARVINPYLLTHHSLALGFFN---------WASQQPNFTHSPL--SYHSILKSLSLSRQ 99
           +V + + P  + +++L  GF N         +  +      SP   +Y+S++ +L + ++
Sbjct: 317 MVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQR 376

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
            +  + ++K+++   I+ D+  Y  +I    +  N +KAF + +E+  +      +   S
Sbjct: 377 TDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTS 436

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL VL+    +  A  +F +++  GV    I F   I   C N+ +     +L ++ + +
Sbjct: 437 LLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMK 496

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    V    I+ G C+  +VEEA ++ DE++ R  KPD I++  +   +   G + +
Sbjct: 497 --VPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD 554

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              V  +    G  P    Y   + GL   +    A+EL + +VS   T DD     LI 
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 340 SVSSID 345
            ++ ++
Sbjct: 615 GIAKVN 620


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 144/592 (24%), Positives = 258/592 (43%), Gaps = 25/592 (4%)

Query: 18  ISASNRTRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWA 74
           I  +  + PA +W  LLE       LR S   ++P  + +++   L       L  F   
Sbjct: 46  IKMNVESEPATEWESLLE-PFDLTKLRKSHILITPVQLCKLLE--LPLDVPTLLEIFERV 102

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
             Q  + H+   Y+  +  L    +   ID +L Q+K   I    S++  I+    +   
Sbjct: 103 GGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQ 162

Query: 135 TQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             +A  +  +++  + CE       + +L +L +      A  +F +M  +GV  +   F
Sbjct: 163 PGQAIRLLLDMRAVYLCEPTFKSY-DLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTF 221

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           G+ +   C   ++    S+L ++ K  +  +  S++   +IH   +  +V EA K+L+E+
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTK--HGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            +  C PD   +  V      +  + +   ++ +    G  P    Y   + GL    ++
Sbjct: 280 FVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKL 339

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN-FMIEKGRVPTLSTLSN 370
            EA+++   I       ++ +LN LI G V S   + A  F N  MI  G  P + T + 
Sbjct: 340 NEARKILIKIPCP----NNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LCK        ++   +S      ++ +Y ++V+ LC +G L EA  V+ EM  +G
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L  +   YN L+ A CR++ +  A  L  +M   GC  +L TYN LI    +V  I+ A 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           RLFHNML  G   +  TY +L+  L +    Q A  + N  +     L +   +  + + 
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 551 CRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           C+ G+      L    ++ GL +D   + S  I++  L    +V+ A E ++
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGAD---TISCNIMINGLCKVGKVDNAFEFLR 624



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 218/473 (46%), Gaps = 10/473 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++  ++K+L +  ++++  S+L+ +  +    +S VY+ +I +L Q     +A  +  E
Sbjct: 219 FTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEE 278

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +         +  N ++  L     I +A K+ D M  RG     + +G  +   C   K
Sbjct: 279 MFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIA 263
           L +   +L ++    N+++N       +I+G+    +++EA   L+E  I    +PD   
Sbjct: 339 LNEARKILIKIPCPNNAILN------TLINGYVMSGQLKEAQSFLNETMINFGFQPDIFT 392

Query: 264 YRIVAEEFKLMGSV-FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           Y I+       GS+ F R++V +  R+ G  P    Y   + GL     + EA  +   +
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRR-GCEPNVITYAILVNGLCKAGLLEEAGLVLHEM 451

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            +   TI+  + N LI ++   +    A+   + M  KG  P L T ++L   LCK ++ 
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DE   ++  +  +    +  +YN ++  L   G  ++A  ++ +M  +G   D   YN L
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGL 571

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++A C+   +    +L++QM   G   +  + NI+I+   +VG+++ A     + + +G 
Sbjct: 572 IKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGF 631

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            PD  TY S+L GLC+   ++ A  +F++     V       +TF+   C+ G
Sbjct: 632 VPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEG 684


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 144/592 (24%), Positives = 258/592 (43%), Gaps = 25/592 (4%)

Query: 18  ISASNRTRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWA 74
           I  +  + PA +W  LLE       LR S   ++P  + +++   L       L  F   
Sbjct: 46  IKMNVESEPATEWESLLE-PFDLTKLRKSRILITPVQLCKLLE--LPLDVPTLLEIFERV 102

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
             Q  + H+   Y+  +  L    +   ID +L Q+K   I    S++  I+    +   
Sbjct: 103 GGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQ 162

Query: 135 TQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             +A  +  +++  + CE       + +L +L +      A  +F +M  +GV  +   F
Sbjct: 163 PGQAIRLLLDMRAVYLCEPTFKSY-DLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTF 221

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           G+ +   C   ++    S+L ++ K  +  +  S++   +IH   +  +V EA K+L+E+
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTK--HGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            +  C PD   +  V      +  + +   ++ +    G  P    Y   + GL    ++
Sbjct: 280 FVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKL 339

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN-FMIEKGRVPTLSTLSN 370
            EA+++   I       ++ +LN LI G V S   + A  F N  MI  G  P + T + 
Sbjct: 340 NEARKILIKIPCP----NNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LCK        ++   +S      ++ +Y ++V+ LC +G L EA  V+ EM  +G
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L  +   YN L+ A CR++ +  A  L  +M   GC  +L TYN LI    +V  I+ A 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           RLFHNML  G   +  TY +L+  L +    Q A  + N  +     L +   +  + + 
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 551 CRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           C+ G+      L    ++ GL +D   + S  I++  L    +V+ A E ++
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGAD---TISCNIMINGLCKVGKVDNAFEFLR 624



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 218/473 (46%), Gaps = 10/473 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++  ++K+L +  ++++  S+L+ +  +    +S VY+ +I +L Q     +A  +  E
Sbjct: 219 FTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEE 278

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +         +  N ++  L     I +A K+ D M  RG     + +G  +   C   K
Sbjct: 279 MFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIA 263
           L +   +L ++    N+++N       +I+G+    +++EA   L+E  I    +PD   
Sbjct: 339 LNEARKILIKIPCPNNAILN------TLINGYVMSGQLKEAQSFLNETMINFGFQPDIFT 392

Query: 264 YRIVAEEFKLMGSV-FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           Y I+       GS+ F R++V +  R+ G  P    Y   + GL     + EA  +   +
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRR-GCEPNVITYAILVNGLCKAGLLEEAGLVLHEM 451

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            +   TI+  + N LI ++   +    A+   + M  KG  P L T ++L   LCK ++ 
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DE   ++  +  +    +  +YN ++  L   G  ++A  ++ +M  +G   D   YN L
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGL 571

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++A C+   +    +L++QM   G   +  + NI+I+   +VG+++ A     + + +G 
Sbjct: 572 IKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGF 631

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            PD  TY S+L GLC+   ++ A  +F++     V       +TF+   C+ G
Sbjct: 632 VPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEG 684



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 6/174 (3%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y+ ++K+      I     + +Q+ ++ +  D+     +I  L +      AF 
Sbjct: 562 TLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFE 621

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
              +   N     P+I   NS+L  L   G I  AL +FD +   GV      +  FI  
Sbjct: 622 FLRDA-IN-RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISW 679

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            C+   +    S     R  EN  +  ++   ++++   K    E  F VLDEL
Sbjct: 680 QCKEGMVNDACSFF--YRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 216/476 (45%), Gaps = 9/476 (1%)

Query: 96  LSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153
           L R  +A+D VL Q+  +   +  D+ V+  ++  L++G   +   SV+NE+      I 
Sbjct: 137 LRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM--TGRGIQ 194

Query: 154 PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P++   N+L+  L     +  A+ M +EMS  GV      F   +  F E   +   L +
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
             + +  E       V   ++I+G+CK  RVE+A   + +      +PD + Y       
Sbjct: 255 --KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL 312

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G V     V+    + G  P    Y   I  L     + EAK +   +V      D 
Sbjct: 313 CQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT 372

Query: 332 DVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N LI ++SS +    A+     +  KG  P + T + L   LCK       + +++ 
Sbjct: 373 TTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEE 432

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + ++    D  +YN+++  LC+ G+L  A  ++ EM+  G       YN++++A C++  
Sbjct: 433 MKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR 492

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A++++DQM A G S +  T+N LI    +   I+ A  L   M+++G+ P+  TY S
Sbjct: 493 IEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNS 552

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +L   C++ N++ A ++      +   +      T +  LC+ G   VA KLLRG+
Sbjct: 553 ILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM 608



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/542 (20%), Positives = 246/542 (45%), Gaps = 12/542 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL   N A  + +F  S   Y  I++ L  +   + ++ ++++++     + + V R  +
Sbjct: 72  ALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFV 131

Query: 127 PSLIQGKNTQKAFS-VFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHR 183
            S  + +    A   V N++  +   +  +  + N LL VL     +     +++EM+ R
Sbjct: 132 ESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGR 191

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G++   +     I   C   ++   + ML+E+    + +         ++ GF +   +E
Sbjct: 192 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSS--HGVAPDETTFTTLMQGFIEEGSIE 249

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            A +V  ++    C P  +   ++   +  MG V +    ++++   G  P    Y  F+
Sbjct: 250 AALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFV 309

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS---SIDPRSAIVFFNFMIEKG 360
            GL     +  A ++ ++++      D    N +I  +S    +D    IV  N M+++G
Sbjct: 310 HGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV--NQMVDRG 367

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P  +T + L   L  +N+ +E +++ + L+      D+ ++N++++ LC  G      
Sbjct: 368 CLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGI 427

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + +EMK  G  PD   YN L++  C    L  A  L ++M ++GC  +  TYN +I   
Sbjct: 428 RLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDAL 487

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +   IE A  +F  M  +G++  A T+ +L++GLC+   +  A E+  + V   +    
Sbjct: 488 CKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNN 547

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKW 598
              ++ +   C++G+   A  +L  ++++    D  ++  L+  L  A   ++A++ ++ 
Sbjct: 548 ITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRG 607

Query: 599 IQ 600
           ++
Sbjct: 608 MR 609



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 8/402 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   Y   +  L Q  +   A  V + +     D      N+++  L+ +G +D A  + 
Sbjct: 301 DQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV 360

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
           ++M  RG    T  F   I       +L + L +  E+  +   +        ++I+  C
Sbjct: 361 NQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVK--GLSPDVYTFNILINALC 418

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K        ++ +E++   C PD + Y I+ +    MG +     +L +    G    T 
Sbjct: 419 KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFN 354
            Y   I  L  + RI EA+E+ + + +   +      N LI  +     ID   A     
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRID--DATELIE 536

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G  P   T +++  + CK+    +  ++ + ++AN +  D+ +Y  +++ LC +G
Sbjct: 537 QMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAG 596

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R + A  +++ M+ KG+ P    YN ++++  R + LR A  L+ +M   G   +  TY 
Sbjct: 597 RTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYK 656

Query: 475 ILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           I+       G  I+ A      M+ KG  P+ +++  L EGL
Sbjct: 657 IVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 698



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 63  HHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           H S AL   +   Q+    H P   +Y++++  LS + +++    ++ Q+       D++
Sbjct: 317 HVSHALKVMDLMLQE---GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 373

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            +  +I +L      ++A  +  E+    + + P++   N L+  L   G     +++F+
Sbjct: 374 TFNTLIVALSSQNRLEEALDLAREL--TVKGLSPDVYTFNILINALCKVGDPHLGIRLFE 431

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM   G     + + + I   C   KLG  L +L+E+    N     +V    II   CK
Sbjct: 432 EMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES--NGCPRSTVTYNTIIDALCK 489

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             R+EEA +V D++  +      + +  + +       + +   ++++  K G+ P    
Sbjct: 490 KMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNIT 549

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   +     +  I +A ++ E + +  F ID      LI G   +   + A+     M 
Sbjct: 550 YNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 609

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC-TSGRL 416
            KG  PT    + + ++L +RN   + + +++ ++      D  +Y ++   LC   G +
Sbjct: 610 IKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPI 669

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +EA+  + EM  KG  P+ S +  L E 
Sbjct: 670 KEAFDFLVEMVNKGFMPEFSSFRMLAEG 697



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
            + S +++++++  L  +++I+    +++Q+    +  ++  Y  I+    +  N +KA 
Sbjct: 508 ISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAA 567

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +   +  N  +I      +L+  L   G    ALK+   M  +G+  +   +   I   
Sbjct: 568 DILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECK 258
                L   L++  E+   E      ++   ++    C+ G  ++EAF  L E+  +   
Sbjct: 628 FRRNNLRDALNLFREM--TEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFM 685

Query: 259 PDFIAYRIVAEEFKLMG 275
           P+F ++R++AE    +G
Sbjct: 686 PEFSSFRMLAEGLLNLG 702


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 151/642 (23%), Positives = 280/642 (43%), Gaps = 60/642 (9%)

Query: 42  GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSIL----KSLSLS 97
           G +  L PS+ A ++   L  +  L   F++WA+  P F H+  S++  L    KS S +
Sbjct: 70  GCKGRLHPSVAAAIL-AQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPA 128

Query: 98  RQINAIDSVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI 156
           + I+   S L  + + N  T  S++ R    +   G + ++    F  ++ +   +    
Sbjct: 129 KAIDLFRSRLPPRCRPNHFTY-STLLRATYKA---GGDVERTLGFFRRIRSSSRSVADY- 183

Query: 157 CNSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            N +L  L   G    AL++F  EM+  GV  + + +   I   C++ +LG  + + +E+
Sbjct: 184 -NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            +R +      V    +I   CK   +EEA ++  ++  R C P+ + Y ++      +G
Sbjct: 243 VERGHH--PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVG 300

Query: 276 SVFE-REVVLKKKRK-LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            + E RE++ +  RK   V P    Y  F+ GL  +    EA EL   +  G   +  D 
Sbjct: 301 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 360

Query: 334 L--NALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +  + LI  +     ID   A   F+ MI  G VP + T + L   LCK +K +    + 
Sbjct: 361 VTFSTLIDGLCKCGQID--EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 418

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + +       D+ +Y+V+V   C + R+ EA  ++  M  +G  P+V  +NS+++  C+ 
Sbjct: 419 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 478

Query: 449 DLLRPAKKLWDQM--------------------FASGCSGNLK------------TYNIL 476
           D    A +++D M                    F +G +G  +             +N  
Sbjct: 479 DRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCC 538

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+  S++G++  AL++++ MLE  + PD  T+  L+ G C+  N + A  +F + V  ++
Sbjct: 539 INGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 598

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LLKSLADAREVEMAI 593
                     +  LC+ G    A  +L  L  +LG   + V    L+  L  +  +E A 
Sbjct: 599 QPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657

Query: 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
           + ++ +  S           L  +L  +S  +  L L+  L+
Sbjct: 658 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 699



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 196/444 (44%), Gaps = 10/444 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVN--KITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           ++Y+S L  L           +++ ++    +++ D+  +  +I  L +     +A SVF
Sbjct: 324 ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVF 383

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +++            N+L+  L     ++ A  M + M  +GV    I + V +  FC+ 
Sbjct: 384 DDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 443

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDF 261
           +++ + L +L  +  R        V    II G CK  R  EAF++ D++ ++    PD 
Sbjct: 444 SRVDEALELLHGMASR--GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDK 501

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  + +     G   + E +L         P T  +   I GL     +  A ++   
Sbjct: 502 ITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNR 557

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++  +   D    N LI G+  + +   A   F  M+ K   P + T   L   LCK  +
Sbjct: 558 MLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 617

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +   ++  ++       ++ +YN +V  LC SGR+ EA   ++EM   G  PD   Y S
Sbjct: 618 VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGS 677

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+ A CR      A +L  ++ + G   +  TYNIL+    + G+ E A+ +   M+ KG
Sbjct: 678 LVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKG 737

Query: 501 VAPDATTYTSLLEGLCQETNLQAA 524
             PD  TY +L++ LC+  +L+ A
Sbjct: 738 HHPDVVTYNTLIDSLCKAGDLEEA 761



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 203/461 (44%), Gaps = 49/461 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKM 176
           D+  +   I  L +  +  +A  V+N +    E +  ++  N L+A     G  + A  +
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRM-LELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHG 235
           F+EM  + ++   + FG  I   C   K GQV +  D +    N  +  +V+    ++HG
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLC---KAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R+EEA + L+E+    C PD I Y          GS+            L  A R
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITY----------GSLV---------YALCRASR 687

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
           T+D  + +          E K  G       +  D    N L+ G   S     AI    
Sbjct: 688 TDDALQLV---------SELKSFG-------WDPDTVTYNILVDGLWKSGQTEQAITVLE 731

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN---DYFTDMESYNVMVSFLC 411
            M+ KG  P + T + L  +LCK    +E   ++  +S+        ++ +Y+V+++ LC
Sbjct: 732 EMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLC 791

Query: 412 TSGRLREAYGVIQEMKRKGLD--PDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CS 467
             GR+ EA  +IQEM RK  D  P++  YNS ++  C++ ++  A +L   +       S
Sbjct: 792 KVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVS 851

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  T++ LI    + G+ + A  +F +M+  G  P+  TY  L+ GLC+   ++ A  +
Sbjct: 852 PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
               V+  V       S  + + C+  H   A +LL G++S
Sbjct: 912 IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 229/531 (43%), Gaps = 41/531 (7%)

Query: 51   LVARVINPYLLTHHSLALGFFNWASQQP---------NFTHSP--LSYHSILKSLSLSRQ 99
            +VA+ + P ++T  +L  G       +          N    P  ++Y++++  L  S +
Sbjct: 593  MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR 652

Query: 100  INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
            I      L+++  +    DS  Y  ++ +L +   T  A  + +E+K    D      N 
Sbjct: 653  IEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNI 712

Query: 160  LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
            L+  L   G  + A+ + +EM  +G     + +   I   C+   L +   +  ++  R 
Sbjct: 713  LVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772

Query: 220  NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK--PDFIAYR----------I 266
            +     +V+   ++I+G CK  R++EA +++ E+  + C   P+ I Y           +
Sbjct: 773  SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSM 832

Query: 267  VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
            +AE  +LM S+        +   L V+P T  +   I GL    +  EA  + + +++G 
Sbjct: 833  MAEACELMRSL--------RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGG 884

Query: 327  FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            +  +    N L+  +   D    A      M++KG  P + T S L    CK +  DE +
Sbjct: 885  YVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEAL 944

Query: 386  EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEA 444
            E+   +++     ++ ++N ++  LC S +  EA+ +  +M  K GL PD   Y +L++ 
Sbjct: 945  ELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDG 1004

Query: 445  CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
              R      A+ L D M       +   +N  I+  S++G++    R  H MLE  + PD
Sbjct: 1005 LFRTGWAGQAEVLLDAMPDP----DTYAFNCCINGLSKLGDVS---RALHRMLELELVPD 1057

Query: 505  ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
              T+  L+ G C+  N + A  +F + V  ++          +  LC+ G 
Sbjct: 1058 KVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 27/276 (9%)

Query: 158  NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            ++L+  L   G  D A  +FD+M   G   + + + V +   C+  K+ +  +M++    
Sbjct: 858  STLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIE---- 913

Query: 218  RENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF- 271
               SM++  V   +I     +  FCK   V+EA ++L  +  R C P+ + +  + +   
Sbjct: 914  ---SMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLC 970

Query: 272  --KLMGSVFE--REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                 G  F+   ++ LK     G+AP    Y   I GL       +A    EV++    
Sbjct: 971  KSDQSGEAFQMFDDMTLKH----GLAPDKITYCTLIDGLFRTGWAGQA----EVLLDAMP 1022

Query: 328  TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
              D    N  I  +S +   S     + M+E   VP   T + L    CK    ++   +
Sbjct: 1023 DPDTYAFNCCINGLSKLGDVSRA--LHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 388  YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            ++ + A +   D+ ++  ++  LC +G++   + ++
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/584 (23%), Positives = 250/584 (42%), Gaps = 73/584 (12%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           L  +L P  V+++IN ++ T    AL FF W S++  + H    + S+L  L   + +  
Sbjct: 65  LASTLRPHHVSKIINTHINT--DTALQFFYWISKRHFYKHDMGCFVSMLNRLVKDKILAP 122

Query: 103 IDSV-------------LKQV------------------------------KVNKITLDS 119
            D V             LK+V                              K + +T   
Sbjct: 123 ADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQ 182

Query: 120 SVYRFII-----PSLI-----------QGKNTQKAFSVFNEV-KFNCEDIGPE--ICNSL 160
           +VY  I      PSL+           +GK  Q+A  VFN++ +F   D+ P+     SL
Sbjct: 183 NVYAQIFSSGVKPSLLTFNTMINILCKKGK-VQEAVLVFNKIFQF---DLCPDAFTYTSL 238

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     +  +D A ++FD M   G   +++ +   I   C   ++G+ + ML+E+ ++  
Sbjct: 239 ILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG- 297

Query: 221 SMINGSVIAVLI-IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             I  +V    + I   C   RV++A  ++  +  + C P    Y  +       G +  
Sbjct: 298 --IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +  K  K G+ P T  Y   I  L  E R   A ++ + +       +    N +I 
Sbjct: 356 AIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIK 415

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +  +D    A+V FN M++ G  PT+ T + L     KR   +       ++  ++   
Sbjct: 416 GLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEP 475

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +Y  ++S  C  G+L  A     EM + G+ P+   Y ++++  C+E  +  A  L+
Sbjct: 476 DERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLF 535

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M  +GCS +++TYN +IS  S+      A +    M E+G+ P+  TYTSL+ GLC+ 
Sbjct: 536 ERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKN 595

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           T    AF++F++    + +      ++ +  LC+ G    A +L
Sbjct: 596 TATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL 639



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 182/453 (40%), Gaps = 41/453 (9%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LA+G ++   ++     + ++Y++++  L    +      +   ++ +    ++  Y  I
Sbjct: 355 LAIGMYHKMLKE-GLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQI 413

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I  L    + +KA  VFN++  +         N+L+      GY++NA +    M     
Sbjct: 414 IKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNC 473

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           E     +   I  FC+  KL    S   E+ K   S    +  A  +I G+CK  +++ A
Sbjct: 474 EPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTA--MIDGYCKEGKIDVA 531

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             + + +    C      Y  +           E E    K  + G+ P T  Y   I G
Sbjct: 532 LSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLING 591

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L                                    +     A   F+ M +K  +P  
Sbjct: 592 L----------------------------------CKNTATNLAFKIFHEMEKKNCLPNA 617

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T ++L   LC+  K    V+  + L+ N     +++Y+ +VS LC  GR  EA  +++ 
Sbjct: 618 HTYTSLIYGLCQEGK----VDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVEN 673

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           MK KGL P +  Y SL+ A C+   +  A ++++ M   G   +L  Y +LI     V  
Sbjct: 674 MKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSR 733

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            E AL +F ++L+K    D   +T L++GL QE
Sbjct: 734 AEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQE 766



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 196/513 (38%), Gaps = 67/513 (13%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S L++++++  L    ++     V  ++    +  D+  Y  +I    + +   KAF VF
Sbjct: 196 SLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVF 255

Query: 143 NE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +  VK  C +      ++L+  L ++G I  A+ M +EM+ +G+E +   + V I   C+
Sbjct: 256 DRMVKDGC-NPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD 314

Query: 202 NAKLGQVLSMLDEVRKR---------------------------------ENSMINGSVI 228
             ++   ++++  + K+                                 +  ++  +V 
Sbjct: 315 IGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVT 374

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +I+  C   R   A K+ D +       +   Y  + +    M  + +  VV  K  
Sbjct: 375 YNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKML 434

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
           K G +P    Y   I+  +    +  A     ++       D+     LI G        
Sbjct: 435 KDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLD 494

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           SA  FF  M++ G  P   T + +    CK  K D  + +++ +  N     +E+YN ++
Sbjct: 495 SATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAII 554

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           S L    R  EA     +M  +GL P+   Y SL+   C+      A K++ +M    C 
Sbjct: 555 SGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCL 614

Query: 468 GNLKTYNILISKFSEVGEIEGALRL-------------------------------FHNM 496
            N  TY  LI    + G+++ A RL                                 NM
Sbjct: 615 PNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM 674

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            EKG++P    Y SLL   C+   +  A E+FN
Sbjct: 675 KEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFN 707



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 125/306 (40%), Gaps = 34/306 (11%)

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP  + +  +       G V E  +V  K  +  + P    Y   ILG    R++ +A E
Sbjct: 194 KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFE 253

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           +                                  F+ M++ G  P   T S L   LC 
Sbjct: 254 V----------------------------------FDRMVKDGCNPNSVTYSTLINGLCN 279

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +  E +++ + ++       + +Y V +S LC  GR+ +A  +++ M +KG  P V  
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +++    R   +  A  ++ +M   G   N  TYN LI++    G    AL++F  M 
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME 399

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             G   +A TY  +++GL    +++ A  VFNK +           +T ++   +RG+  
Sbjct: 400 GHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLN 459

Query: 558 VATKLL 563
            AT+ L
Sbjct: 460 NATRFL 465



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 178/442 (40%), Gaps = 22/442 (4%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYR 123
            +AL  F+W        ++  +Y+ I+K L        +D + K + V NK+  D     
Sbjct: 389 GIALKIFDWMEGHGTLANAQ-TYNQIIKGLF------GMDDIEKAMVVFNKMLKDGPSPT 441

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKF-------NCEDIGPEICNSLLAVLASDGYIDNALKM 176
            +  + +  +N ++ + + N  +F       NCE      C  L++     G +D+A   
Sbjct: 442 VVTYNTLIVENLKRGY-LNNATRFLYMMKESNCEPDERTYC-ELISGFCKGGKLDSATSF 499

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F EM   G+  +   +   I  +C+  K+   LS+ +  R  EN           II G 
Sbjct: 500 FYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFE--RMEENGCSASIETYNAIISGL 557

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            KG R  EA K   ++  +  +P+ I Y  +        +      +  +  K    P  
Sbjct: 558 SKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNA 617

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
           + Y   I GL  E ++  A+ L E   +G     D     + G         A      M
Sbjct: 618 HTYTSLIYGLCQEGKVDAAERLTE---NGCEPTIDTYSTLVSGLCREGRSNEASQLVENM 674

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            EKG  P++    +L    CK  K D  +E++ +++   +   +  Y V++  LC   R 
Sbjct: 675 KEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRA 734

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  + Q + +K  + D+  +  L++   +E       K    M +  C+ +L TY IL
Sbjct: 735 EEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIIL 794

Query: 477 ISKFSEVGEIEGALRLFHNMLE 498
             + S+VG+  G  ++ + + E
Sbjct: 795 ARELSKVGKSIGTDQIGNRLRE 816


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 192/380 (50%), Gaps = 9/380 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++ VL  +G +  A      M   GV+ + + +   +  +C + ++    ++L  +++
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 218 RE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           ++   +S   GS+I+     G CK  R+EEA K+ +E+  +  +P  + Y  + + F   
Sbjct: 285 QKIEPDSFTYGSLIS-----GMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G++        +  K G++P  + Y   I  L +E+R  EA+ + + I     + D    
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY 399

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI G     + + A +  + M+  G  PT  T ++L   L K+N+  E  +++K +++
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D   +N ++   C++  ++ A+ ++++M R  + PD   +N++M+  CRE  +  
Sbjct: 460 EGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A++L+D+M   G   +  ++N LIS +S  G+I+ A R+ + ML+ G  P   TY +L++
Sbjct: 520 ARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579

Query: 514 GLCQETNLQAAFEVFNKSVN 533
           GLC+      A E+  + V+
Sbjct: 580 GLCKNQEGDLAEELLKEMVS 599



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 177/457 (38%), Gaps = 78/457 (17%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           S V+ ++I S        +AF  F  +K        E CNSLL++       + A  ++ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM    ++ S   F +                                     +I+  CK
Sbjct: 211 EMFRLRIKSSVYTFNI-------------------------------------MINVLCK 233

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             ++++A   +  +     KP+ + Y  +   +   G V   + +L   ++  + P +  
Sbjct: 234 EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFT 293

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I G+  + R+ EA ++ E +V         + N LI G  +  +   A  + + M+
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +KG  PT+ST                                   YN ++  L    R  
Sbjct: 354 KKGISPTMST-----------------------------------YNSLIHALFMEQRTD 378

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  +I+E++ KG+ PD   YN L+   CR    + A  L D+M ASG     KTY  L+
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              S+   ++ A  LF  +  +GV PDA  + +L++G C  +N++ AFE+        V 
Sbjct: 439 HVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498

Query: 538 LARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
                 +T M   CR G    A +L      RG+  D
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 176/417 (42%), Gaps = 42/417 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +G    +  +PN     ++Y++I+     S ++ A D++L  +K  KI  DS  Y     
Sbjct: 244 VGHMETSGVKPNI----VTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTY----- 294

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
                                          SL++ +   G ++ A K+F+EM  +G+  
Sbjct: 295 ------------------------------GSLISGMCKQGRLEEASKIFEEMVQKGLRP 324

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           S + +   I  FC    L    +  DE+ K+  S    +  +  +IH     +R +EA  
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNS--LIHALFMEQRTDEAEC 382

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           ++ E++ +   PD I Y I+   +    +  +  ++  +    G+ P    Y   +  L 
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            + R+ EA +L + I S     D  + NALI G  S+ + + A      M      P   
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + + +  C+  K +E  E++  +       D  S+N ++S     G +++A+ V  EM
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              G +P V  YN+L++  C+      A++L  +M + G + +  TY  LI   ++V
Sbjct: 563 LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 140/318 (44%), Gaps = 32/318 (10%)

Query: 295 RTNDYREFILGLIVERRICEAKE----LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           + +D R   L +++  R+   K     L + +  G      ++   L  S   +  +S+I
Sbjct: 93  KLSDARTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGFKSSI 152

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF +++I               K+ C  N++DE  E +  +        +E+ N ++S  
Sbjct: 153 VF-DYLI---------------KSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLF 196

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
               R   A+ +  EM R  +   V  +N ++   C+E  L+ AK     M  SG   N+
Sbjct: 197 LKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNI 256

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  +   G +E A  +   M  + + PD+ TY SL+ G+C++  L+ A ++F +
Sbjct: 257 VTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDS--HVILLKSL 583
            V   +  +  I +T +   C +G+  +A+      L +G+S  +   +S  H + ++  
Sbjct: 317 MVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQR 376

Query: 584 ADAREVEMAIEHIKWIQE 601
            D  E       IK IQE
Sbjct: 377 TDEAEC-----MIKEIQE 389



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 7/353 (1%)

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R+      S++   +I   C   R +EAF+    ++ +   P       +   F  +   
Sbjct: 143 RDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVL-- 334
               V+  +  +L +      +   I  L  E ++ +AK+ +G +  SG   +  +++  
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG---VKPNIVTY 259

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N ++ G  SS    +A      M  +   P   T  +L   +CK+ + +E  ++++ +  
Sbjct: 260 NTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQ 319

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                    YN ++   C  G L  A     EM +KG+ P +S YNSL+ A   E     
Sbjct: 320 KGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDE 379

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+ +  ++   G S +  TYNILI+ +      + A  L   ML  G+ P   TYTSLL 
Sbjct: 380 AECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLH 439

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            L ++  ++ A ++F K  +  V+    + +  +   C   +   A +LL+ +
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDM 492



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 122/260 (46%), Gaps = 2/260 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+S++ +L + ++ +  + ++K+++   I+ D+  Y  +I    +  N +KAF + +E+
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +      +   SLL VL+    +  A  +F +++  GV    I F   I   C N+ +
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNV 482

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +L ++ + +  +    V    I+ G C+  +VEEA ++ DE++ R  KPD I++ 
Sbjct: 483 KGAFELLKDMDRMK--VPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFN 540

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   +   G + +   V  +    G  P    Y   + GL   +    A+EL + +VS 
Sbjct: 541 TLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSK 600

Query: 326 KFTIDDDVLNALIGSVSSID 345
             T DD     LI  ++ ++
Sbjct: 601 GMTPDDTTYFTLIEGIAKVN 620


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 139/568 (24%), Positives = 243/568 (42%), Gaps = 70/568 (12%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  V+   +  H  + + FF WA ++ NF H   +Y 
Sbjct: 73  KWGPDAEKALEVLKLK--VDHRLVREVLKIDVEIH--VKIQFFKWAGKRRNFEHDSTTYM 128

Query: 89  S-----------------------------------ILKSLSLSRQINAIDSVLKQVKVN 113
           +                                   I+K L  ++ +N   S+  Q+K  
Sbjct: 129 ALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGR 188

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
           K    S+ Y  +I  L+Q  + +K   ++NE+  N  D  P+    ++L+A     G  D
Sbjct: 189 KCKPTSNTYNSMILMLMQEGHHEKVHELYNEM-CNEGDCLPDTVTYSALIAAFGKLGRDD 247

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
           +A+ +FDEM   G+  +   +   +  + +  ++ + L ++ E++++      G  + V 
Sbjct: 248 SAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEK------GCALTVY 301

Query: 232 ----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G  K  +VEEA+ +   +    CKPD +    +       G + +   + ++ 
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 288 RKLGVAPRTNDYREFILGLIVER-RICEA-------KELGEVIVSGKFTIDDDVLNALIG 339
             L   P    Y   I  L   + R  EA       KE G V  S  ++I  D      G
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID------G 415

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              +     A++    M EKG  P  +   +L   L K  + +   E+++ L  N  ++ 
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSS 475

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
              Y VM+  L   GRL EA  +  EMK+ G +PDV  YN+LM    R  +   A  L  
Sbjct: 476 ARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLR 535

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M  +GC+ +L ++NI+++ F+  G  +GA+ +F  M    + PD  +Y ++L  L +  
Sbjct: 536 TMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAG 595

Query: 520 NLQAAF----EVFNKSVNHDVMLARSIL 543
             + A     E+ +K   +D++   SIL
Sbjct: 596 MFEEAAKLMKEMNSKGFEYDLITYSSIL 623


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/536 (23%), Positives = 235/536 (43%), Gaps = 77/536 (14%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           ++  L  SR+++   ++ KQ+    I  D   Y  +I  L + +  ++A+ +F E +   
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEAR--A 58

Query: 150 EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS-HRGVEFSTIGFGVFIWKFCENAKLG 206
           +   P +   N+++  L   G I+NAL ++D+M+ H G   + + +   I   C + ++ 
Sbjct: 59  KGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVD 118

Query: 207 QVLSMLDEVRKRE--------NSMINGS-------------------------VIAVLII 233
           +   +L+E+  R         N+++N                           +   LII
Sbjct: 119 KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 234 HGFCKGKRVEEAFKVLDEL-------------------------RI------------RE 256
            G CK   +E AF+V+DE+                         RI            R 
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C+P+ + Y  + +    M  + E   +L K  +LG    T  Y   + GL+   R+ +A 
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 298

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +   +       D    N LI G       R A+     M+E G  P++ T + L   L
Sbjct: 299 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 358

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPD 434
           C+  + DE VE+   ++A     +  +Y+ +V  LC +GR+ EA G  ++M R + + P 
Sbjct: 359 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 418

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y++L++  C+   +  A +  ++M  +G   ++ T++ILI+   + G I+  L LF 
Sbjct: 419 VIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFR 478

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            M E+G  PD  TY +L++ LC+ + +  AF++F +  +  +   RS   T +  L
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 184/417 (44%), Gaps = 12/417 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           + ++Y++++ +L    +     S+L+Q+  N    +   +  II  L +    + AF V 
Sbjct: 135 NAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 194

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E+      + P++   NS+L  L  +  I +A  +F     RG   + + +   I    
Sbjct: 195 DEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 254

Query: 201 ENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           + AK+ + L +L    E+  R N++   +V+      G  K  R+E+A  VL ++R   C
Sbjct: 255 KMAKMDEALQLLAKMVELGCRANTVTYSTVV-----DGLLKVGRMEDAVVVLRQMRDAGC 309

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD + Y  + + F     + E   +L++  + G  P    Y     GL    R  EA E
Sbjct: 310 LPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVE 369

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNL 375
           + + + +     +    ++++ G   +     A+ +F  M     V P +   S L   L
Sbjct: 370 ILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGL 429

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK  K DE  E  + +       D+ +++++++ LC +GR+     + + M  +G  PD+
Sbjct: 430 CKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDM 489

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
             Y +L++  CR   +  A  L+ QM + G S +  T   +I    EV   E A R+
Sbjct: 490 VTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/528 (24%), Positives = 231/528 (43%), Gaps = 46/528 (8%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           FN    Q N   S   +  IL SL  S   + + S+ +Q++ N IT D  +   +I    
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 131 QGKNTQKAFSVFNEV-KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           Q      +FSV  ++ K   E   P +    +L+  L   G I  AL+  D++   G   
Sbjct: 119 QLGQNPLSFSVLAKILKMGYE---PNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHL 175

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAF 246
           + + +G  I   C   K+GQ  + L  +R+ +  ++  +V+    II   CK K V EAF
Sbjct: 176 NKVSYGTLINGLC---KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            +  E+  +   PD + Y  +   F ++G + +   +  K     + P    +   + G 
Sbjct: 233 DLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGF 292

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
             ERR+ EAK +                                     M+++G  P + 
Sbjct: 293 CKERRLKEAKNV----------------------------------LAMMMKQGIKPDVF 318

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L    C   + ++   ++  +S      ++ SY++M+   C   ++ EA  + +EM
Sbjct: 319 TYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM 378

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
               + PDV  YNSL++  C+   +  A KL D+M   G   +  TYN ++    +  ++
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ L   M ++G+ PD  TYT+L++GLC+   L+ A  VF   +    +L  +I +  
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAM 498

Query: 547 MISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
           +   C  G F  +  LL  +  +  + ++ ++ I++ SL D  E + A
Sbjct: 499 IQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKA 546



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 186/406 (45%), Gaps = 16/406 (3%)

Query: 172 NALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE-NSMINGSVIA 229
           N +  F+ + H +  + S   FG  +    ++     V+S+    R+ E N + +  VI 
Sbjct: 54  NLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLH---RQMEFNGITSDLVIL 110

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ F +  +   +F VL ++     +P+ I    + +   L G + +      K   
Sbjct: 111 SILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVA 170

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-NALIGSVSSID-PR 347
           LG       Y   I GL    +   A +L    V GK    + V+ N +I S+  +    
Sbjct: 171 LGFHLNKVSYGTLINGLCKVGQTSAALQLLRR-VDGKLVQPNVVMYNTIIDSMCKVKLVN 229

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   ++ M+ KG  P + T + L    C   K  +  +++  +   +   ++ ++N++V
Sbjct: 230 EAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILV 289

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C   RL+EA  V+  M ++G+ PDV  YNSLM+  C    +  AK +++ +   G +
Sbjct: 290 DGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVN 349

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-- 525
            N+ +Y+I+I  F ++ +++ A+ LF  M    + PD  TY SL++GLC+   +  A   
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 526 --EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             E+ ++ V HD +   SIL     +LC+      A  LL  +  +
Sbjct: 410 VDEMHDRGVPHDKITYNSILD----ALCKNHQVDKAIALLTKMKDE 451



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 208/471 (44%), Gaps = 26/471 (5%)

Query: 33  LLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILK 92
           +L     QLG ++ LS S++A++          L +G+      +PN     ++  +++K
Sbjct: 112 ILINCFSQLG-QNPLSFSVLAKI----------LKMGY------EPNV----ITLTTLIK 150

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152
            L L  QI+       +V      L+   Y  +I  L +   T  A  +   V       
Sbjct: 151 GLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 210

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
              + N+++  +     ++ A  ++ EM  +G+    + +   I  FC   K+     + 
Sbjct: 211 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLF 270

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           +++   EN  IN +V    +++ GFCK +R++EA  VL  +  +  KPD   Y  + + +
Sbjct: 271 NKMI-FEN--INPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            L+  V + + +     + GV P  + Y   I G    +++ EA  L + +       D 
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDV 387

Query: 332 DVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N+LI  +  +   S A+   + M ++G      T +++   LCK ++ D+ + +   
Sbjct: 388 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 447

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +       D+ +Y  +V  LC +GRL +A  V +++  KG   DV+ Y ++++  C   L
Sbjct: 448 MKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGL 507

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
              +  L  +M  +GC  N  TY I+I    +  E + A +L   M+ +G+
Sbjct: 508 FDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 7/246 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+S++    L +++N    +   +    +  +   Y  +I    + K   +A ++F E
Sbjct: 318 FTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKE 377

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +C +I P++   NSL+  L   G I  ALK+ DEM  RGV    I +   +   C+N
Sbjct: 378 M--HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKN 435

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            ++ + +++L   + ++  +         ++ G CK  R+E+A  V ++L ++    D  
Sbjct: 436 HQVDKAIALL--TKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVN 493

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEV 321
            Y  + + F   G   E   +L K  + G  P    Y   I  L  +    +A K L E+
Sbjct: 494 IYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREM 553

Query: 322 IVSGKF 327
           I  G F
Sbjct: 554 ITRGLF 559


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 215/447 (48%), Gaps = 8/447 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I   I+  N ++A  + +E+      +     N+++  +A  G +  A+ +F+EM
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G+E  T  + + I  + ++  + +   +L E++ R+  +        ++I G C   
Sbjct: 408 LMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK--LTPSPFTYSVLISGLCHSS 465

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDY 299
            +++A +VLD++     KP+   Y  + + + +  S +E  + +LK     GV P    Y
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAY-VQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIE 358
              I+GL   +++ EAK L   +       +     A I   S S + + A  +F  M+ 
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G VP     + L K  C    + E +  +K +       D+ +Y+ ++  L  +G+ +E
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKE 644

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A GV  +  + G+ PDV  YNSL+   C+E  +  A +L+D+M  +G + N+  YN LI+
Sbjct: 645 AMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN 704

Query: 479 KFS--EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            +   + G +  A +LF  M+ KG++PD   Y  L++G  +E NL+ A  +F+++    V
Sbjct: 705 DYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 764

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL 563
             + S  ++ + S C+ G  + A +L 
Sbjct: 765 G-SLSAFNSLIDSFCKHGKVIEARELF 790



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 222/509 (43%), Gaps = 24/509 (4%)

Query: 68  LGFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           LGF N AS          F  + +  +++++ L  +  +     V   +   KI  D   
Sbjct: 185 LGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYT 244

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDE 179
           Y  +I +  +  +  K   V +E++  C+   P +   N+ +  L   G +D AL++   
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECK---PNLFTYNAFIGGLCQTGAVDEALEVKKL 301

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCK 238
           M  +G+      + + +  FC+  +  +   + + +    +S +N +      +I GF K
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM---PSSGLNPNRFTYTALIDGFIK 358

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
              +EEA ++ DE+  R  K + + Y  +       G + +   +  +    G+ P T  
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWT 418

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I G +    + +A EL   + + K T      + LI G   S D + A    + MI
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G  P +     L K   + ++ +  +E+ K++ AN    D+  YN ++  LC + ++ 
Sbjct: 479 RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  ++ +M  KG+ P+   Y + +    +   ++ A++ +  M +SG   N   Y ILI
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVN 533
               +VG    AL  F  MLEKG+ PD   Y++++  L +    + A  VF K     V 
Sbjct: 599 KGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVV 658

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKL 562
            DV L  S++S F    C+ G    A++L
Sbjct: 659 PDVFLYNSLISGF----CKEGDIEKASQL 683



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 113/536 (21%), Positives = 219/536 (40%), Gaps = 18/536 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
            T SP +Y  ++  L  S  +   + VL Q+  N +  +  +Y  +I + +Q    + A 
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506

Query: 140 SVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            +   +  N   + P++ C N L+  L     ++ A  +  +M  +G++ +   +G FI 
Sbjct: 507 ELLKIMIAN--GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + ++ ++        ++    + ++  +VI  ++I G C      EA      +  +  
Sbjct: 565 LYSKSGEIQVAERYFKDML--SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD  AY  +       G   E   V  K  K GV P    Y   I G   E  I +A +
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682

Query: 318 LGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           L + ++      +  V N LI   G   S +   A   F+ MI KG  P       L   
Sbjct: 683 LYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDG 742

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             K    ++ + ++   +       + ++N ++   C  G++ EA  +  +M  K L P+
Sbjct: 743 CGKEGNLEKALSLFHE-AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPN 801

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  Y  L++A  + +++  A++L+  M       N  TY  L+  ++++G     + LF 
Sbjct: 802 IVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFK 861

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +M  +G+A DA  Y  +    C+E     A ++ NKS+   + L   +    +  LC+  
Sbjct: 862 DMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEK 921

Query: 555 HFLVATKLLRGLSSD---LGHSDSHVILLKSLADAREVEMA-----IEHIKWIQES 602
                 +LL  +  +   L     + +LL       E E +     ++ + W+  S
Sbjct: 922 QISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTS 977



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 129/543 (23%), Positives = 228/543 (41%), Gaps = 53/543 (9%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQ---PNFTHSPLSYHSILK-SLSLSRQINA 102
           L+P +V  V+    +        FF+W+S +   P + HS    +SIL   L  S  I+ 
Sbjct: 83  LNPEIVCSVLQKSEIDDSVRLQNFFHWSSSKMSTPQYLHS----YSILAIRLCNSGLIHQ 138

Query: 103 IDSVL-KQVKVNKITLDSSVYRFIIPSLIQ-----GKNTQKAFSVFNEVKFNC------- 149
            D++L K ++  K  L+      I+ SL++     G +    F +F + KF         
Sbjct: 139 ADNMLEKLLQTRKPPLE------ILDSLVRCYREFGGSNLTVFDIFID-KFRVLGFLNEA 191

Query: 150 ---------EDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
                    E   P +  CN+L+  L     +    K++  M    +      +   I  
Sbjct: 192 SSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKA 251

Query: 199 FCENAKLGQVLS---MLDEVRK--RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            C   K+G V+    +L E+ K  + N     + I      G C+   V+EA +V   + 
Sbjct: 252 HC---KVGDVIKGKMVLSEMEKECKPNLFTYNAFIG-----GLCQTGAVDEALEVKKLMM 303

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +   PD   Y ++ + F       E +++ +     G+ P    Y   I G I E  I 
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIE 363

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLS 372
           EA  + + +++    ++    NA+IG ++     + A+  FN M+  G  P   T + L 
Sbjct: 364 EALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLI 423

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
               K +   +  E+   + A        +Y+V++S LC S  L++A  V+ +M R G+ 
Sbjct: 424 DGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK 483

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y +L++A  +E     A +L   M A+G   +L  YN LI       ++E A  L
Sbjct: 484 PNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             +M EKG+ P+A TY + +    +   +Q A   F   ++  ++    I +  +   C 
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCD 603

Query: 553 RGH 555
            G+
Sbjct: 604 VGN 606



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 2/243 (0%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +EK   P L T +     LC+    DE +EV K++       D  +Y ++V   C   R 
Sbjct: 268 MEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRS 327

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           +EA  + + M   GL+P+   Y +L++   +E  +  A ++ D+M   G   N+ TYN +
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I   ++ GE+  A+ LF+ ML  G+ PD  TY  L++G  +  ++  A E+  +     +
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIE 594
             +    S  +  LC       A ++L  +  +    +  +   L+K+       EMAIE
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 595 HIK 597
            +K
Sbjct: 508 LLK 510


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 234/504 (46%), Gaps = 32/504 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ L+ +LV  V++  L+ +  L + FF WA +Q  + H+   YH++L+ L        
Sbjct: 123 FREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRV 180

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICN 158
            +  L++++      D  +   ++  LI+       ++V  E     +D+G +      N
Sbjct: 181 PEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYN 236

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EMS  G        G F+   C+  +  + L++++   K 
Sbjct: 237 ALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KE 293

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E  +   +VI   +I G C+    EEA   L  +R   C P+ + YRI+     L G + 
Sbjct: 294 EFKL--DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL-----LCGCLR 346

Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTI 329
           +R++     +L      G  P    +   I           A    K++G+      + +
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 330 DDDVLNALIGS--VSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
            + ++  + G+  + S+D    A   +  M++   V     +SNL++ LC   K ++   
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           + + + +  +  D  +Y+ ++  LC + ++  A+ + +EMK   + PDV  Y  L+++ C
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +  LL+ A+K +D+M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK 530
           TYT+L++G C+   ++ A +++ +
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYAR 610



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 173/432 (40%), Gaps = 58/432 (13%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I NSL+      G    A K+  +M   G +   + + + I   C N KL   L +L+  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELA 429

Query: 216 RKRENSMING--------------------------SVIAVLIIHGF------------- 236
            K    M++                           S+I  ++  GF             
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 237 -CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C   +V+ AF + +E++     PD   Y I+ + F  +G + +      +  + G AP 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              Y   I   +  R++  A EL E+++S     +     ALI G   S     A   + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 355 --------------FMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                         F I+ G  R P + T   L   LCK +K  E  ++  V+S      
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +   Y+ ++   C  G+L EA  V  +M  +G  P+V  Y+SL++   ++  L  A K+ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M  + C+ N+  Y  +I    +VG+ + A RL   M EKG  P+  TYT++++G  + 
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 519 TNLQAAFEVFNK 530
             +    E+  +
Sbjct: 790 GKVDKCLELMRQ 801



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 204/470 (43%), Gaps = 25/470 (5%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F     +Y  ++  L  + +++    + +++K N +  D   Y  +I S  +    Q+A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 139 FSVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
              F+E V+  C    P +    +L+        + +A ++F+ M   G   + + +   
Sbjct: 535 RKWFDEMVRDGC---APNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 196 IWKFCENAKLGQVLSMLDEVR------------KRENSMINGSVIAVL--IIHGFCKGKR 241
           I   C++ ++ +   +   +R            K ++  I    I     ++ G CK  +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EA  +LD + +  C+P+ I Y  + + F  +G + E ++V  K  + G  P    Y  
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKG 360
            I  L  ++R+  A ++   ++      +  +   +I  +  +     A    + M EKG
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + +     K  K D+ +E+ + + A     +  +Y V+++  C +G L +A+
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAH 831

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ EMK+      ++ Y  ++E   RE ++  +  L D++  +     +  Y ILI  F
Sbjct: 832 QLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 481 SEVGEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + G +E AL L   M       A D   Y+SL+E L   + +  AFE++
Sbjct: 890 CKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELY 939



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 9/208 (4%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           TL      LCK  +  E +    ++   ++  D   Y  M+S LC +    EA   +  M
Sbjct: 269 TLGCFVHLLCKAGRWREAL---ALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +     P+V  Y  L+  C R+  L   K++   M   GC  + + +N LI  +   G+ 
Sbjct: 326 RSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDY 385

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR 540
             A +L   M + G  P    Y  L+ G+C    L      + A + + + ++  V+L +
Sbjct: 386 SYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNK 445

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSS 568
             +S     LC  G F  A  ++R + S
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMS 473



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V     + RL  AY V +EM   G + D       +   C+    R A  L ++ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKE 293

Query: 462 FASGCSGNLKT--YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
                   L T  Y  +IS   E    E A+     M      P+  TY  LL G  ++ 
Sbjct: 294 -----EFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
            L     + +  +      +R I ++ + + CR G +  A KLL+ +  D G    +V+
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM-GDCGCQPGYVV 406


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 217/503 (43%), Gaps = 58/503 (11%)

Query: 51  LVARVINPYLLTHHSLALGFFNW-----ASQQPNFTHSP-----LSYHSILKSLSLSRQI 100
           LV +   P ++    L  GFFN+     AS+      S       +Y++++       +I
Sbjct: 94  LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRI 153

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEICNS 159
            A   VL ++K      D   Y  +I SL   +    A  V +++   NC    P +   
Sbjct: 154 EAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM---PTVITY 210

Query: 160 LLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            + + A+  +G I+ A+K+ +EM  RG+      +                         
Sbjct: 211 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA----------------------- 247

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                         II G CK   VE A +++  L  + CKPD I+Y I+   F   G  
Sbjct: 248 --------------IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKW 293

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E ++ +    G  P    Y   I  L    RI EA  + +V++  + T D    + L
Sbjct: 294 DEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPL 353

Query: 338 IGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I ++     +D   AI   ++MI  G +P +   + +   LCK   +++ +E++  L   
Sbjct: 354 ISALCKEGRLD--LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGM 411

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ SYN M+S L + G    A G++  M  KG+DPD   YNSL+   CR+ L+  A
Sbjct: 412 GCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEA 471

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L D M  SG    + +YNI++    +V  I+ A+ +F  M+EKG  P+ TTY  L+EG
Sbjct: 472 IGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEG 531

Query: 515 LCQETNLQAAFEVFNKSVNHDVM 537
           +        A E+ N   + DV+
Sbjct: 532 IGFAGWRTEAMELANSLFSRDVI 554



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 38/344 (11%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           ++   +I GF   K +E+A +V++ L     +PD  AY  V   F  +  +     VL +
Sbjct: 104 ILCTKLIKGFFNFKNIEKASRVMEILE-SHTEPDVFAYNAVISGFCKVNRIEAATQVLNR 162

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
            +  G  P    Y   I  L      C  ++LG  +          VL+ L+        
Sbjct: 163 MKARGFLPDIVTYNIMIGSL------CNRRKLGLAL---------KVLDQLL-------- 199

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                  N M      PT+ T + L +        +E +++ + + A     DM +YN +
Sbjct: 200 -----LDNCM------PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  +C  G +  A  +I  +  KG  PDV  YN L+ A   +      +KL  +MF+ GC
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  TY+ILIS     G I+ A+ +   M+EK + PD  +Y  L+  LC+E  L  A  
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL---LRGLS 567
           + +  +++  +      +T + +LC+ G+   A ++   LRG+ 
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 412



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + E+     +PDV  YN+++   C+ + +  A ++ ++M A G   ++ TYNI+I     
Sbjct: 125 VMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN 184

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++  AL++   +L     P   TYT L+E    E  +  A ++  +      MLAR +
Sbjct: 185 RRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEE------MLARGL 238

Query: 543 L------STFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSL 583
           L      +  +  +C+ G    A +L+  L+S     D  S+ ILL++ 
Sbjct: 239 LPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAF 287


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 196/426 (46%), Gaps = 17/426 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKM 176
            Y  ++  L +     KA+ VF E+    +D G  P++     L+      G I+ ALK+
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEM----DDFGVAPDVRSFTILIGGFCRVGEIEEALKI 222

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           + EM HRG++   + F   I  F    K+   ++ L E+R     ++   VI  ++I GF
Sbjct: 223 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCF--GLVPDGVIYTMVIGGF 280

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   + +A +V DE+    C PD + Y  +         + + E +L + R+ GV P  
Sbjct: 281 CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDL 340

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             +   I G  +E ++ +A +L + +++ +   D    N LI G     D   A   ++ 
Sbjct: 341 CTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD 400

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  +   P   T S L  + C++ + ++       +       ++ +YN ++   C SG 
Sbjct: 401 MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGN 460

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +    +Q+M    + PD+  YN+L+    +ED +  A KL + M       ++ TYN+
Sbjct: 461 VSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 520

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+ FS  G ++ A  +F  M  KG+ PD  TY S++ G     N + AF++      HD
Sbjct: 521 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL------HD 574

Query: 536 VMLARS 541
            ML R 
Sbjct: 575 EMLQRG 580



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/514 (21%), Positives = 199/514 (38%), Gaps = 77/514 (14%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H+  K+L    + + +D+V+ +++   +  D   +  ++ +  +  + + A ++ + +  
Sbjct: 103 HNYCKAL----EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 158

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                G    NS+L  L   G  D A ++F EM   GV      F               
Sbjct: 159 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF--------------- 203

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
                                  ++I GFC+   +EEA K+  E+R R  KPD +++  +
Sbjct: 204 ----------------------TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 241

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
              F   G +      L++ R  G+ P    Y   I G       C A      ++S   
Sbjct: 242 IGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF------CRAG-----LMSDAL 290

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            + D+                       M+  G +P + T + L   LCK  +  +   +
Sbjct: 291 RVRDE-----------------------MVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       D+ ++  ++   C  G+L +A  +   M  + L PD+  YN+L++  CR
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           +  L  A  LWD M +     N  TY+ILI    E G++E A      M+ KG+ P+  T
Sbjct: 388 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 447

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           Y S+++G C+  N+    +   K + + V       +T +    +      A KLL  + 
Sbjct: 448 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 507

Query: 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            +    D  V+    L +   V   ++   WI E
Sbjct: 508 KEKVQPD--VVTYNMLINGFSVHGNVQEAGWIFE 539



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 2/337 (0%)

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           NS +N   + +++ H +CK    ++   V+ E+  R   PD + + ++ +     G    
Sbjct: 90  NSEVNTYTLNIMV-HNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 148

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              ++      G+ P    Y   + GL       +A E+ + +       D      LIG
Sbjct: 149 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 208

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               + +   A+  +  M  +G  P L + S L     +R K D  +   + +       
Sbjct: 209 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 268

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   Y +++   C +G + +A  V  EM   G  PDV  YN+L+   C+E  L  A+ L 
Sbjct: 269 DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLL 328

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G   +L T+  LI  +   G+++ AL+LF  ML + + PD  TY +L++G+C++
Sbjct: 329 NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 388

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            +L  A ++++   + ++       S  + S C +G 
Sbjct: 389 GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 425



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 197/456 (43%), Gaps = 11/456 (2%)

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T    V+  +I +  Q +  ++AF  F  +  +   I     N+LLA L+  G+   A  
Sbjct: 22  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAAD 81

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            +  +     E +T    + +  +C+  +  +V +++ E+ KR   +    V   +++  
Sbjct: 82  AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKR--CVFPDVVTHNVMVDA 139

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             +    E A  ++D +  +  KP  + Y  V +     G   +   V K+    GVAP 
Sbjct: 140 RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 199

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFN 354
              +   I G      I EA ++ + +       D    + LIG  +       A+ +  
Sbjct: 200 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 259

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M   G VP     + +    C+     + + V   +       D+ +YN +++ LC   
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           RL +A G++ EM+ +G+ PD+  + +L+   C E  L  A +L+D M       ++ TYN
Sbjct: 320 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 379

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNK 530
            LI      G+++ A  L+ +M  + + P+  TY+ L++  C++  ++ AF    E+ NK
Sbjct: 380 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 439

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +  ++M   SI+  +    CR G+     K L+ +
Sbjct: 440 GILPNIMTYNSIIKGY----CRSGNVSKGQKFLQKM 471


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 139/568 (24%), Positives = 243/568 (42%), Gaps = 70/568 (12%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  V+   +  H  + + FF WA ++ NF H   +Y 
Sbjct: 73  KWGPDAEKALEVLKLK--VDHRLVREVLKIDVEIH--VKIQFFKWAGKRRNFEHDSTTYM 128

Query: 89  S-----------------------------------ILKSLSLSRQINAIDSVLKQVKVN 113
           +                                   I+K L  ++ +N   S+  Q+K  
Sbjct: 129 ALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGR 188

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
           K    S+ Y  +I  L+Q  + +K   ++NE+  N  D  P+    ++L+A     G  D
Sbjct: 189 KCKPTSNTYNSMILMLMQEGHHEKVHELYNEM-CNEGDCLPDTVTYSALIAAFGKLGRDD 247

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
           +A+ +FDEM   G+  +   +   +  + +  ++ + L ++ E++++      G  + V 
Sbjct: 248 SAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEK------GCALTVY 301

Query: 232 ----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G  K  +VEEA+ +   +    CKPD +    +       G + +   + ++ 
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 288 RKLGVAPRTNDYREFILGLIVER-RICEA-------KELGEVIVSGKFTIDDDVLNALIG 339
             L   P    Y   I  L   + R  EA       KE G V  S  ++I  D      G
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID------G 415

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              +     A++    M EKG  P  +   +L   L K  + +   E+++ L  N  ++ 
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSS 475

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
              Y VM+  L   GRL EA  +  EMK+ G +PDV  YN+LM    R  +   A  L  
Sbjct: 476 ARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLR 535

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M  +GC+ +L ++NI+++ F+  G  +GA+ +F  M    + PD  +Y ++L  L +  
Sbjct: 536 TMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAG 595

Query: 520 NLQAAF----EVFNKSVNHDVMLARSIL 543
             + A     E+ +K   +D++   SIL
Sbjct: 596 MFEEAAKLMKEMNSKGFEYDLITYSSIL 623


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 196/426 (46%), Gaps = 17/426 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKM 176
            Y  ++  L +     KA+ VF E+    +D G  P++     L+      G I+ ALK+
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEM----DDFGVAPDVRSFTILIGGFCRVGEIEEALKI 283

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           + EM HRG++   + F   I  F    K+   ++ L E+R     ++   VI  ++I GF
Sbjct: 284 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC--FGLVPDGVIYTMVIGGF 341

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   + +A +V DE+    C PD + Y  +         + + E +L + R+ GV P  
Sbjct: 342 CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDL 401

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             +   I G  +E ++ +A +L + +++ +   D    N LI G     D   A   ++ 
Sbjct: 402 CTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD 461

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  +   P   T S L  + C++ + ++       +       ++ +YN ++   C SG 
Sbjct: 462 MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGN 521

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +    +Q+M    + PD+  YN+L+    +ED +  A KL + M       ++ TYN+
Sbjct: 522 VSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 581

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+ FS  G ++ A  +F  M  KG+ PD  TY S++ G     N + AF++      HD
Sbjct: 582 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL------HD 635

Query: 536 VMLARS 541
            ML R 
Sbjct: 636 EMLQRG 641



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/514 (21%), Positives = 199/514 (38%), Gaps = 77/514 (14%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H+  K+L    + + +D+V+ +++   +  D   +  ++ +  +  + + A ++ + +  
Sbjct: 164 HNYCKAL----EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 219

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                G    NS+L  L   G  D A ++F EM   GV      F               
Sbjct: 220 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF--------------- 264

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
                                  ++I GFC+   +EEA K+  E+R R  KPD +++  +
Sbjct: 265 ----------------------TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 302

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
              F   G +      L++ R  G+ P    Y   I G       C A      ++S   
Sbjct: 303 IGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF------CRAG-----LMSDAL 351

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            + D+                       M+  G +P + T + L   LCK  +  +   +
Sbjct: 352 RVRDE-----------------------MVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       D+ ++  ++   C  G+L +A  +   M  + L PD+  YN+L++  CR
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           +  L  A  LWD M +     N  TY+ILI    E G++E A      M+ KG+ P+  T
Sbjct: 449 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 508

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           Y S+++G C+  N+    +   K + + V       +T +    +      A KLL  + 
Sbjct: 509 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 568

Query: 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            +    D  V+    L +   V   ++   WI E
Sbjct: 569 KEKVQPD--VVTYNMLINGFSVHGNVQEAGWIFE 600



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 2/337 (0%)

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           NS +N   + +++ H +CK    ++   V+ E+  R   PD + + ++ +     G    
Sbjct: 151 NSEVNTYTLNIMV-HNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 209

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              ++      G+ P    Y   + GL       +A E+ + +       D      LIG
Sbjct: 210 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 269

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               + +   A+  +  M  +G  P L + S L     +R K D  +   + +       
Sbjct: 270 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 329

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   Y +++   C +G + +A  V  EM   G  PDV  YN+L+   C+E  L  A+ L 
Sbjct: 330 DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLL 389

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G   +L T+  LI  +   G+++ AL+LF  ML + + PD  TY +L++G+C++
Sbjct: 390 NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 449

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            +L  A ++++   + ++       S  + S C +G 
Sbjct: 450 GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 486



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 197/456 (43%), Gaps = 11/456 (2%)

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T    V+  +I +  Q +  ++AF  F  +  +   I     N+LLA L+  G+   A  
Sbjct: 83  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAAD 142

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            +  +     E +T    + +  +C+  +  +V +++ E+ KR   +    V   +++  
Sbjct: 143 AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKR--CVFPDVVTHNVMVDA 200

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             +    E A  ++D +  +  KP  + Y  V +     G   +   V K+    GVAP 
Sbjct: 201 RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 260

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFN 354
              +   I G      I EA ++ + +       D    + LIG  +       A+ +  
Sbjct: 261 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 320

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M   G VP     + +    C+     + + V   +       D+ +YN +++ LC   
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           RL +A G++ EM+ +G+ PD+  + +L+   C E  L  A +L+D M       ++ TYN
Sbjct: 381 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 440

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNK 530
            LI      G+++ A  L+ +M  + + P+  TY+ L++  C++  ++ AF    E+ NK
Sbjct: 441 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 500

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +  ++M   SI+  +    CR G+     K L+ +
Sbjct: 501 GILPNIMTYNSIIKGY----CRSGNVSKGQKFLQKM 532



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 140/337 (41%), Gaps = 9/337 (2%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           + L++++   +  D  +Y  +I    +      A  V +E+   C  + P++   N+LL 
Sbjct: 317 AYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM-VGCGCL-PDVVTYNTLLN 374

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +  + +A  + +EM  RGV      F   I  +C   KL + L + D +    N  
Sbjct: 375 GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML---NQR 431

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   ++    +I G C+   +++A  + D++  RE  P+ + Y I+ +     G V +  
Sbjct: 432 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 491

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
             L +    G+ P    Y   I G      + + ++  + ++  K + D    N LI G 
Sbjct: 492 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 551

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +       A    N M ++   P + T + L           E   +++ + A     D 
Sbjct: 552 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 611

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +Y  M++   T+G  +EA+ +  EM ++G  PD  F
Sbjct: 612 YTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 39/283 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFN 143
           ++Y+++L  L   R++   + +L +++   +  D   +  +I    I+GK   KA  +F+
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFD 425

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +  N + + P+I   N+L+  +   G +D A  ++D+M  R +  + + + + I   CE
Sbjct: 426 TM-LN-QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 202 NAKLGQVLSMLDEVRKRE--------NSMINGS-------------------------VI 228
             ++      LDE+  +         NS+I G                          + 
Sbjct: 484 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 543

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +IHG+ K  ++ +AFK+L+ +   + +PD + Y ++   F + G+V E   + +K  
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             G+ P    Y   I G +      EA +L + ++   F  DD
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 234/504 (46%), Gaps = 32/504 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ L+ +LV  V++  L+ +  L + FF WA +Q  + H+   YH++L+ L        
Sbjct: 123 FREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRV 180

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICN 158
            +  L++++      D  +   ++  LI+       ++V  E     +D+G +      N
Sbjct: 181 PEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYN 236

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EMS  G        G F+   C+  +  + L++++   K 
Sbjct: 237 ALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KE 293

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E  +   +VI   +I G C+    EEA   L  +R   C P+ + YRI+     L G + 
Sbjct: 294 EFKL--DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL-----LCGCLR 346

Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTI 329
           +R++     +L      G  P    +   I           A    K++G+      + +
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 330 DDDVLNALIGS--VSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
            + ++  + G+  + S+D    A   +  M++   V     +SNL++ LC   K ++   
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           + + + +  +  D  +Y+ ++  LC + ++  A+ + +EMK   + PDV  Y  L+++ C
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +  LL+ A+K +D+M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK 530
           TYT+L++G C+   ++ A +++ +
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYAR 610



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 173/432 (40%), Gaps = 58/432 (13%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I NSL+      G    A K+  +M   G +   + + + I   C N KL   L +L+  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELA 429

Query: 216 RKRENSMING--------------------------SVIAVLIIHGF------------- 236
            K    M++                           S+I  ++  GF             
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 237 -CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C   +V+ AF + +E++     PD   Y I+ + F  +G + +      +  + G AP 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              Y   I   +  R++  A EL E+++S     +     ALI G   S     A   + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 355 --------------FMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                         F I+ G  R P + T   L   LCK +K  E  ++  V+S      
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +   Y+ ++   C  G+L EA  V  +M  +G  P+V  Y+SL++   ++  L  A K+ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M  + C+ N+  Y  +I    +VG+ + A RL   M EKG  P+  TYT++++G  + 
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 519 TNLQAAFEVFNK 530
             +    E+  +
Sbjct: 790 GKVDKCLELMRQ 801



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/523 (21%), Positives = 224/523 (42%), Gaps = 25/523 (4%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F     +Y  ++  L  + +++    + +++K N +  D   Y  +I S  +    Q+A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 139 FSVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
              F+E V+  C    P +    +L+        + +A ++F+ M   G   + + +   
Sbjct: 535 RKWFDEMVRDGC---APNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 196 IWKFCENAKLGQVLSMLDEVR------------KRENSMINGSVIAVL--IIHGFCKGKR 241
           I   C++ ++ +   +   +R            K ++  I    I     ++ G CK  +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EA  +LD + +  C+P+ I Y  + + F  +G + E ++V  K  + G  P    Y  
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKG 360
            I  L  ++R+  A ++   ++      +  +   +I  +  +     A    + M EKG
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + +     K  K D+ +E+ + + A     +  +Y V+++  C +G L +A+
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAH 831

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ EMK+      ++ Y  ++E   RE ++  +  L D++  +     +  Y ILI  F
Sbjct: 832 QLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 481 SEVGEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + G +E AL L   M       A D   Y+SL+E L   + +  AFE++   +    + 
Sbjct: 890 CKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIP 949

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
             SI    +  L R   +  A +L   +   +  S+S  ++LK
Sbjct: 950 ELSIFFYLVKGLIRINRWEEALQLSDCICQMVHVSNSSSLILK 992



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 9/208 (4%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           TL      LCK  +  E +    ++   ++  D   Y  M+S LC +    EA   +  M
Sbjct: 269 TLGCFVHLLCKAGRWREAL---ALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +     P+V  Y  L+  C R+  L   K++   M   GC  + + +N LI  +   G+ 
Sbjct: 326 RSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDY 385

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR 540
             A +L   M + G  P    Y  L+ G+C    L      + A + + + ++  V+L +
Sbjct: 386 SYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNK 445

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSS 568
             +S     LC  G F  A  ++R + S
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMS 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V     + RL  AY V +EM   G + D       +   C+    R A  L ++ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKE 293

Query: 462 FASGCSGNLKT--YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
                   L T  Y  +IS   E    E A+     M      P+  TY  LL G  ++ 
Sbjct: 294 -----EFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
            L     + +  +      +R I ++ + + CR G +  A KLL+ +  D G    +V+
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM-GDCGCQPGYVV 406


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 234/504 (46%), Gaps = 32/504 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ L+ +LV  V++  L+ +  L + FF WA +Q  + H+   YH++L+ L        
Sbjct: 123 FREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRV 180

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICN 158
            +  L++++      D  +   ++  LI+       ++V  E     +D+G +      N
Sbjct: 181 PEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYN 236

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EMS  G        G F+   C+  +  + L++++   K 
Sbjct: 237 ALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KE 293

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E  +   +VI   +I G C+    EEA   L  +R   C P+ + YRI+     L G + 
Sbjct: 294 EFKL--DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL-----LCGCLR 346

Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTI 329
           +R++     +L      G  P    +   I           A    K++G+      + +
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 330 DDDVLNALIGS--VSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
            + ++  + G+  + S+D    A   +  M++   V     +SNL++ LC   K ++   
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           + + + +  +  D  +Y+ ++  LC + ++  A+ + +EMK   + PDV  Y  L+++ C
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +  LL+ A+K +D+M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK 530
           TYT+L++G C+   ++ A +++ +
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYAR 610



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 173/432 (40%), Gaps = 58/432 (13%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I NSL+      G    A K+  +M   G +   + + + I   C N KL   L +L+  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELA 429

Query: 216 RKRENSMING--------------------------SVIAVLIIHGF------------- 236
            K    M++                           S+I  ++  GF             
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 237 -CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C   +V+ AF + +E++     PD   Y I+ + F  +G + +      +  + G AP 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              Y   I   +  R++  A EL E+++S     +     ALI G   S     A   + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 355 --------------FMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                         F I+ G  R P + T   L   LCK +K  E  ++  V+S      
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +   Y+ ++   C  G+L EA  V  +M  +G  P+V  Y+SL++   ++  L  A K+ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M  + C+ N+  Y  +I    +VG+ + A RL   M EKG  P+  TYT++++G  + 
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 519 TNLQAAFEVFNK 530
             +    E+  +
Sbjct: 790 GKVDKCLELMRQ 801



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 221/519 (42%), Gaps = 29/519 (5%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F     +Y  ++  L  + +++    + +++K N +  D   Y  +I S  +    Q+A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 139 FSVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
              F+E V+  C    P +    +L+        + +A ++F+ M   G   + + +   
Sbjct: 535 RKWFDEMVRDGC---APNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 196 IWKFCENAKLGQVLSMLDEVR------------KRENSMINGSVIAVL--IIHGFCKGKR 241
           I   C++ ++ +   +   +R            K ++  I    I     ++ G CK  +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EA  +LD + +  C+P+ I Y  + + F  +G + E ++V  K  + G  P    Y  
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKG 360
            I  L  ++R+  A ++   ++      +  +   +I  +  +     A    + M EKG
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + +     K  K D+ +E+ + + A     +  +Y V+++  C +G L +A+
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAH 831

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ EMK+      ++ Y  ++E   RE ++  +  L D++  +     +  Y ILI  F
Sbjct: 832 QLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 481 SEVGEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + G +E AL L   M       A D   Y+SL+E L   + +  AFE++   +    + 
Sbjct: 890 CKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIP 949

Query: 539 ARSILSTFMISLCRRGHFLV----ATKLLRGLSSDLGHS 573
             SI    +  L R    L     A+  L G S+  GH+
Sbjct: 950 ELSIFFYLVKGLIRINRTLCXTTWASYYLWGQSAATGHA 988



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 9/208 (4%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           TL      LCK  +  E +    ++   ++  D   Y  M+S LC +    EA   +  M
Sbjct: 269 TLGCFVHLLCKAGRWREAL---ALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +     P+V  Y  L+  C R+  L   K++   M   GC  + + +N LI  +   G+ 
Sbjct: 326 RSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDY 385

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR 540
             A +L   M + G  P    Y  L+ G+C    L      + A + + + ++  V+L +
Sbjct: 386 SYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNK 445

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSS 568
             +S     LC  G F  A  ++R + S
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMS 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V     + RL  AY V +EM   G + D       +   C+    R A  L ++ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKE 293

Query: 462 FASGCSGNLKT--YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
                   L T  Y  +IS   E    E A+     M      P+  TY  LL G  ++ 
Sbjct: 294 -----EFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
            L     + +  +      +R I ++ + + CR G +  A KLL+ +  D G    +V+
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM-GDCGCQPGYVV 406


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 3/408 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G ++ A ++   M   G + ++  F + I  +C    +G+ L +LDE+ K
Sbjct: 372 NVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  +++  +V    +I+G C  K +  A K+L+++     KP+ + Y I+   +   G +
Sbjct: 432 R--NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L      GVAP    Y   I  L    ++ EA      I       D     A 
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 338 IGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S     + A  +F+ M++ G +P     + L     K     E + +++ L A   
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+++ +  +  L  +GR++EA  V  E+K KGL PDV  Y+SL+   C++  +  A +
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G + N+  YN L+    + G+I+ A +LF  M EKG+ PD+ TY+++++G C
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 729

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +  N+  AF +F++  +  V     + +  +   C+ G    A  L R
Sbjct: 730 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 777



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 231/526 (43%), Gaps = 43/526 (8%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   S +SY +++  L   + ++  + +L+++  + +  +  VY  +I +       
Sbjct: 430 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A  + + +  +C  + P+I C N++++ L+  G ++ A     E+  RG++   + FG
Sbjct: 490 EEARRLLDGM--SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI--------------------- 232
            FI  + +  K+ +     DE+      M N  +  VLI                     
Sbjct: 548 AFILGYSKTGKMTEAAKYFDEMLDH-GLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHA 606

Query: 233 -------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                        IHG  K  RV+EA KV  EL+ +   PD   Y  +   F   G V E
Sbjct: 607 LGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV-E 665

Query: 280 REVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +   L  +  L G+AP    Y   + GL     I  A++L + +       D    + +I
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 725

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G   S +   A   F+ M  KG  P     + L    CK    ++ + +++ +    + 
Sbjct: 726 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA 785

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           T + S+N ++   C S +++EA  + QEM  K + PD   Y ++++  C+   +  A  L
Sbjct: 786 TTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 844

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M       +  TY  L+  ++++G+      LF  M+ KGV PD  TY  ++   C+
Sbjct: 845 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCK 904

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           E NL  AF++ ++ V   ++   +I    + +LC+R     A+KLL
Sbjct: 905 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLL 950



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 209/472 (44%), Gaps = 19/472 (4%)

Query: 103 IDSVL--KQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICN 158
           ID VL  K V V+  I ++   Y  +I  L +    +KA  +    V   C+       N
Sbjct: 349 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP------N 402

Query: 159 SLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           S    L  +GY     +  AL++ DEM  R +  S + +G  I   C    L     +L+
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 462

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           ++    + +    V+  ++I  +    R+EEA ++LD +      PD   Y  +      
Sbjct: 463 KMTF--SGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 520

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E    L + +  G+ P    +  FILG     ++ EA +  + ++      ++ +
Sbjct: 521 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 580

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              LI G   + +   A+  F  +   G +P + T S     L K  +  E ++V+  L 
Sbjct: 581 YTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 640

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+ ++S  C  G + +A+ +  EM  KG+ P++  YN+L++  C+   ++
Sbjct: 641 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 700

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+KL+D M   G   +  TY+ +I  + +   +  A  LFH M  KGV P +  Y +L+
Sbjct: 701 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            G C+E +++ A  +F + +        S  +T +   C+      A++L +
Sbjct: 761 HGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQ 811



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/540 (22%), Positives = 222/540 (41%), Gaps = 20/540 (3%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           L+P ++  V++   +      L FF W+  Q        S+  +   L  S      + V
Sbjct: 69  LNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGV 128

Query: 107 LKQVKVNKIT----LDSSVYRF-------------IIPSLIQGKNTQKAFSVFNEVKFNC 149
           L Q+     +    LDS ++ F             +I S  +     +A +VF   K + 
Sbjct: 129 LTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDS 188

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
             I    CNSLL  L   G ++   K+++ M    + F    +   +   C+   L    
Sbjct: 189 ILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAK 248

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            +L E+   E  +     I  L+I G C+   ++EA ++   +  +   P+   Y I+  
Sbjct: 249 RVLIEMD--EKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITA 306

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                  + E ++  ++ +K G+ P  N     I G + E  I E   + +V+VS    I
Sbjct: 307 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPI 366

Query: 330 DDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +    N LI  +        A      M+  G  P   T   L +  C+ +     +E+ 
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +   +      SY  M++ LC    L  A  ++++M   GL P+V  Y+ L+ A   E
Sbjct: 427 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASE 486

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A++L D M  SG + ++  YN +IS  S+ G++E A      +  +G+ PDA T+
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 546

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            + + G  +   +  A + F++ ++H +M    + +  +    + G+ + A  + R L +
Sbjct: 547 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHA 606



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 185/458 (40%), Gaps = 54/458 (11%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           ++  Y  I   L + K   +A   F E++          C++L+     +G ID  L++ 
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 356

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           D M   G+  + I + V I   C+  K+    ++L  +  +  + NS         L+I 
Sbjct: 357 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRT-----FCLLIE 411

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+C+   +  A ++LDE+  R   P  ++Y  +         +     +L+K    G+ P
Sbjct: 412 GYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 471

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y   I+    E RI EA+ L + +       D    NA+I  +S            
Sbjct: 472 NVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS------------ 519

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
              + G++   ST                L+E+           D  ++   +     +G
Sbjct: 520 ---KAGKMEEASTY---------------LLEI----QGRGLKPDAVTFGAFILGYSKTG 557

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA     EM   GL P+   Y  L+    +   L  A  ++ ++ A G   +++T +
Sbjct: 558 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCS 617

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
             I    + G ++ AL++F  + EKG+ PD  TY+SL+ G C++  ++ AFE+      H
Sbjct: 618 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL------H 671

Query: 535 DVMLARSILSTFMI------SLCRRGHFLVATKLLRGL 566
           D M  + I     I       LC+ G    A KL  G+
Sbjct: 672 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 709


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/555 (21%), Positives = 247/555 (44%), Gaps = 37/555 (6%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S AL  F WAS QPN++  P  +H +L+ L+ +   +++ ++L+Q+  +KI +D S +  
Sbjct: 73  SSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLI 132

Query: 125 IIPSLIQGKN-----------TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
            + +     +            ++ F+V  + +F          N  L++L     +   
Sbjct: 133 FLETYATSHHLHAEINPLFLLMERDFAVKPDTRFY---------NVALSLLVKANKLKLV 183

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-----VRKRENSMINGSVI 228
             +  +M    V      F + I   C+  +L   + ML++     +R  E +       
Sbjct: 184 ETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTT---- 239

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              ++ GF +   VE A ++ + +    C+   ++  ++       G + E    + ++ 
Sbjct: 240 ---LMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEE 296

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPR 347
             G  P    +   + GL     I +  E+ + ++   F +D    N+LI  +  + +  
Sbjct: 297 --GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEID 354

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+   + M+ +   P   T + L   LCK N  +   E+ +VL++     D+ ++N ++
Sbjct: 355 EAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLI 414

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC +     A  + +EMK KG DPD   Y+ L+E+ C E  L+ A  L  +M  SGC+
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCA 474

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+  YN LI    +   +  A  +F  M   GV+  + TY +L+ GLC+   ++ A ++
Sbjct: 475 RNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQL 534

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLAD 585
            ++ +   +   +   +T +   C++G    A  +++ ++ +    D  ++  L+  L  
Sbjct: 535 MDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCK 594

Query: 586 AREVEMAIEHIKWIQ 600
           A  V++A + ++ +Q
Sbjct: 595 AGRVDVASKLLRSVQ 609



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/501 (20%), Positives = 195/501 (38%), Gaps = 75/501 (14%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+  L  L  + ++  ++++  ++  + +  D S +  +I +L +    + A  +  ++ 
Sbjct: 167 YNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMP 226

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                   +   +L+     +  ++ AL++ + M   G E +++   V +   C+  ++ 
Sbjct: 227 NYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIE 286

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + L  + E    E       V    +++G C+   +++  +++D +  +  + D   Y  
Sbjct: 287 EALRFIYE----EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNS 342

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +      +G + E   +L         P T  Y   I  L  E  +  A EL  V+ S  
Sbjct: 343 LISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKG 402

Query: 327 FTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL- 384
              D    N+LI  +     R  A+  F  M EKG  P   T S L ++LC   +  E  
Sbjct: 403 VLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEAL 462

Query: 385 --------------VEVYKVL-----------SANDYFTDME---------SYNVMVSFL 410
                         V VY  L            A D F  ME         +YN +++ L
Sbjct: 463 MLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGL 522

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C S R+ EA  ++ +M  +GL PD   Y ++++  C++  ++ A  +   M  +GC  ++
Sbjct: 523 CKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDI 582

Query: 471 KTYNILISKFSEVGEIE-----------------------------------GALRLFHN 495
            TY  LI    + G ++                                    A+RLF  
Sbjct: 583 VTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFRE 642

Query: 496 MLEKGVAPDATTYTSLLEGLC 516
           M+EKG  PD  TY  +  GLC
Sbjct: 643 MMEKGDPPDVITYKIVFRGLC 663



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 162/361 (44%), Gaps = 4/361 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL++ L   G ID A+++   M  R  E +T+ +   I   C+   + +  + L  V  
Sbjct: 341 NSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV-EAATELARVLT 399

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  + +      LI  G C     E A ++ +E++ + C PD   Y I+ E       +
Sbjct: 400 SKGVLPDVCTFNSLI-QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRL 458

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  ++LK+    G A     Y   I GL    R+ +A+++ + +     +      N L
Sbjct: 459 KEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTL 518

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   S     A    + MI +G  P   T + + K  C++       ++ + ++ N  
Sbjct: 519 INGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y  ++  LC +GR+  A  +++ ++ KG+      YN +++A C+    + A +
Sbjct: 579 EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMR 638

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           L+ +M   G   ++ TY I+       G  I+ A+     MLEKG+ P+  ++  L EGL
Sbjct: 639 LFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGL 698

Query: 516 C 516
           C
Sbjct: 699 C 699



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 139/355 (39%), Gaps = 39/355 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++ +L     + A   + + +    +  D   +  +I  L    N + A  +F E
Sbjct: 373 VTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEE 432

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +K    D      + L+  L S+  +  AL +  EM   G   + + +   I   C+N +
Sbjct: 433 MKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNR 492

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G    + D++     S    SV    +I+G CK KRVEEA +++D++ +   KPD   Y
Sbjct: 493 VGDAEDIFDQMEMLGVS--RSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + F   G +     +++     G  P    Y   I GL    R+  A +L   +  
Sbjct: 551 TTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQM 610

Query: 325 GKFTIDDDVLNALIGSV-----------------SSIDP--------------------R 347
               +     N +I ++                    DP                    +
Sbjct: 611 KGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQ 670

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
            A+ F   M+EKG +P   +   L++ LC  +  D L+++  ++     F+  E+
Sbjct: 671 EAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSET 725


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 223/487 (45%), Gaps = 14/487 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFI 125
           AL  FN   ++  F HS L+Y  I++ L       A+++VL + +++   +L   VY   
Sbjct: 23  ALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGA 82

Query: 126 IPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + S  +    Q+A  VF  + F NCE   P +   N+++ +L   GY   A K+F  M +
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCE---PSVLSYNAIMNILVESGYFKQAHKVFLRMKN 139

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
            G+      F + I  FC   +    L +L+ +  +   +   +V    ++ GF +    
Sbjct: 140 VGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQL--NAVAYCTVVAGFYEENYR 197

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA+++ +++      PD   +  +       G V E E +L K  K G+      +  F
Sbjct: 198 VEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIF 257

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           I GL  +  +  A  + + ++    T D    N LI G   + +   A  + + ++  G 
Sbjct: 258 IQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P   T + L    CK        ++ +      +  D  +Y  +++ LC +  +  A  
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALA 377

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +      KGL P V  YN L++  C+E L+  A ++ ++M  +GCS ++ TYN++I+   
Sbjct: 378 LFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLC 437

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVM 537
           ++G +  A  L ++ + KG  PD  T+ +L++G C++  ++   ++ NK  +H    DV+
Sbjct: 438 KMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVI 497

Query: 538 LARSILS 544
              S+L+
Sbjct: 498 TYNSVLN 504



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/523 (23%), Positives = 231/523 (44%), Gaps = 16/523 (3%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   S LSY++I+  L  S        V  ++K   I  D   +   I S  + K    A
Sbjct: 106 NCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSA 165

Query: 139 FSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
             + N  V   C+      C +++A    + Y   A ++F++M   G+      F   + 
Sbjct: 166 LRLLNNMVSQGCQLNAVAYC-TVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLH 224

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             C+  ++ +   +L++V K+   M +      + I G C+   +  A  +LD +     
Sbjct: 225 TLCKKGEVQESERLLNKVLKK--GMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGL 282

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD + Y  +        +V E E  L K    G+ P    Y   I G      +  A++
Sbjct: 283 TPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEK 342

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + +  +   F  D+    +LI  +   D    A+  FN  + KG  PT+   + L K LC
Sbjct: 343 ILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLC 402

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +     + +++   +S N   +D+ +YN++++ LC  G + +A  ++ +   KG  PDV 
Sbjct: 403 QEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVF 462

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +N+L++  C++  +    ++ ++M++ G + ++ TYN +++  S+  + E  +  F  M
Sbjct: 463 TFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM 522

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCR 552
           +EKG  P+  TY  L E LC+   +  A     E+ NK +  D +   +I+S F      
Sbjct: 523 VEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGF----AN 578

Query: 553 RGHFLVATKLLR--GLSSDLGHSD-SHVILLKSLADAREVEMA 592
            G    A +L R  G    + H+  ++ I++ + A+  ++ M 
Sbjct: 579 NGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMG 621



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 184/405 (45%), Gaps = 5/405 (1%)

Query: 173 ALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-ENSMINGSVIAV 230
           AL+MF+++    G + S + +   I K   +     + ++L E R   +NS++ G  I  
Sbjct: 23  ALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGA 82

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +  +G  KGK V+EA  V + +    C+P  ++Y  +       G   +   V  + + +
Sbjct: 83  MKSYGR-KGK-VQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNV 140

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SA 349
           G+ P    +   I      +R   A  L   +VS    ++      ++      + R  A
Sbjct: 141 GIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEA 200

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              FN M+  G  P +ST + L   LCK+ +  E   +   +      +++ ++N+ +  
Sbjct: 201 YELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQG 260

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G L  A  ++  + R+GL PDV  YN+L+   C+   +  A+K   ++   G   +
Sbjct: 261 LCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPD 320

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TYN LI  + ++G ++ A ++    + KG  PD  TY SL+ GLCQ   +  A  +FN
Sbjct: 321 GFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFN 380

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            ++   +     + +  +  LC+ G  L A +++  +S +   SD
Sbjct: 381 AALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSD 425



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 197/447 (44%), Gaps = 14/447 (3%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           LS  ++ +DSV+++     +T D   Y  +I  L +  N  +A    +++     +    
Sbjct: 267 LSGAMSMLDSVIRE----GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGF 322

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N+L+      G + NA K+      +G       +   I   C+N ++ + L++ +  
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAA 382

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             +   +    ++  ++I G C+   + +A ++++E+    C  D   Y +V      MG
Sbjct: 383 LGK--GLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMG 440

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----D 331
            V +   ++      G  P    +   I G   + ++    ++   + S   T D    +
Sbjct: 441 CVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYN 500

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
            VLN L  +V + D       F  M+EKG VP   T + L+++LCK  K +E +++   +
Sbjct: 501 SVLNGLSKAVKNEDLMET---FETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEI 557

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEACCREDL 450
                  D  S+  ++S    +G L+ AY + + M ++  +    + YN ++ A   +  
Sbjct: 558 LNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLD 617

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L   +KL+ +M A GC+ +  TY ++I  F   G  +   +    M+EKG  P  TT+  
Sbjct: 618 LHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGR 677

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVM 537
           ++  LC +  +  A ++ +  V++ ++
Sbjct: 678 VINCLCVQHRVHEAVDIIHFMVHNGIV 704



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/511 (19%), Positives = 216/511 (42%), Gaps = 27/511 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++ +L +L    ++   + +L +V    +  +   +   I  L +      A S+ + V
Sbjct: 218 TFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSV 277

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               E + P++   N+L+  L  +  +  A K   ++ + G+E     +   I  +C+  
Sbjct: 278 IR--EGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCK-- 333

Query: 204 KLGQVLSMLDEVRK-RENSMINGSV----IAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
                + ML    K  + ++  G V        +I+G C+   ++ A  + +    +  K
Sbjct: 334 -----MGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLK 388

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P  I Y ++ +     G + +   ++ +  + G +     Y   I GL     + +A  L
Sbjct: 389 PTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNL 448

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
               ++  +  D    N LI G    +   + I   N M   G  P + T +++   L K
Sbjct: 449 MNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSK 508

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             K+++L+E ++ +       +  +YN++   LC +G++ EA  ++ E+  KG+ PD   
Sbjct: 509 AVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVS 568

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
           + +++        L+ A +L+ +M      S    TYNI+I+ F+E  ++    +LF  M
Sbjct: 569 FATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEM 628

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-- 554
              G APD  TY  +++G C   N  + ++   + +    + + +     +  LC +   
Sbjct: 629 GAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRV 688

Query: 555 -------HFLVATKLLRGLSSDLGHSDSHVI 578
                  HF+V   ++  + + +  +D  V+
Sbjct: 689 HEAVDIIHFMVHNGIVPEVVNSISEADKKVV 719


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 225/514 (43%), Gaps = 42/514 (8%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LA+ FF+WA +Q  + H   SY+ +L  L  S        V K +  +  + +   ++ +
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKIL 68

Query: 126 IPSLIQGKNTQKAFSVFNEV-KFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           I    +     +A      + +F+   + P+  I N L+  L  DG  D A+K+F+ M  
Sbjct: 69  IRGNCKAGQATRALEFLRALDEFS---VAPDVYIFNFLIHGLFKDGNPDQAVKLFENMES 125

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKRENSMINGSVIAVLIIHGFCKGKR 241
             V      +   I   C++  L +   +L+E +R+   S  +      LI  G CK   
Sbjct: 126 SRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGD 185

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           VEEA ++LD +++    PD I Y  +     + G V E   +LK    +  +P    +  
Sbjct: 186 VEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKT---MSCSPDLVTFNT 242

Query: 302 FILG----------LIVERRICEAKELGEVIVSGKFTIDDDVLNAL--IGSVSSIDPRSA 349
            + G          L V   +C    L +VI    +TI   ++N L  +G V     + A
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVIT---YTI---LVNGLCRVGQV-----QVA 291

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES------- 402
                 ++ +G +P +   ++L   LCK  + +E  ++ K +SA +   +M S       
Sbjct: 292 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPL 351

Query: 403 --YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             YN+++  L   G + +A  +I ++  +G  PDV  YN+L++  C+ + +R A  L D+
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE 411

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M + GC  N  T   ++     VG ++ A  L   M  K  AP+   YTSL++GLC+   
Sbjct: 412 MASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDR 471

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +  A  V +      V L        ++S+   G
Sbjct: 472 MDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGG 505



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 189/426 (44%), Gaps = 28/426 (6%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL-A 162
           + + ++ +++  D   Y  +I  L +  N +KA  +  E+        P+I   N+L+ A
Sbjct: 119 LFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINA 178

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            +  DG ++ AL++ D M   G     I +   I   C   ++ +   +L  +    + +
Sbjct: 179 GICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLV 238

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +     ++ GFCK   +  A +VL+E+      PD I Y I+      +G V     
Sbjct: 239 TFNT-----LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 293

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-----GEVIVSGKFTID------- 330
           +L++  + G  P    Y   + GL     I EA +L        I++   +I+       
Sbjct: 294 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFT 353

Query: 331 -DDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            + VL  LI  GS+S      A+   + ++ +G VP + T + L   LCK N+  E  ++
Sbjct: 354 YNIVLGGLIKDGSISK-----AVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDL 408

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +++   F +  +   +V  LC  GR+ +A+ ++ EM RK   P+V  Y SL++  C+
Sbjct: 409 ADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCK 468

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            D +  A  + D M   G + +   Y  LI      G +  A+ ++  M+ +G  PD +T
Sbjct: 469 SDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528

Query: 508 YTSLLE 513
             +L E
Sbjct: 529 SKTLEE 534



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 13/251 (5%)

Query: 326 KFTIDDDV--LNALI-GSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRN-- 379
           +F++  DV   N LI G     +P  A+  F  M E  RV P + T + +   LCK    
Sbjct: 90  EFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENM-ESSRVNPDIFTYNTVISGLCKSGNL 148

Query: 380 -KSDELVEVYKVLSANDYFTDMESYNVMV-SFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            K+ EL+E   +        D+ +YN ++ + +C  G + EA  ++  MK  G  PDV  
Sbjct: 149 EKARELLE-EMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVIT 207

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YNS++ A C    +  A ++   M    CS +L T+N L+  F + G +  AL +   M 
Sbjct: 208 YNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC 264

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            + + PD  TYT L+ GLC+   +Q AF +  + V    +      ++ +  LC+ G   
Sbjct: 265 RENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIE 324

Query: 558 VATKLLRGLSS 568
            A KL++ +S+
Sbjct: 325 EAHKLVKEMSA 335



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 16/299 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL      G +  AL++ +EM    +    I + + +   C   ++     +L+E+ +
Sbjct: 241 NTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVR 300

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC---------KPDFIAYRIVA 268
           +    I   +    ++ G CK   +EEA K++ E+  RE           P    Y IV 
Sbjct: 301 Q--GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVL 358

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS-GKF 327
                 GS+ +   ++      G  P    Y   I GL    R+ EA +L + + S G F
Sbjct: 359 GGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCF 418

Query: 328 TIDDDVLNALIG--SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
             D  + + + G   V  +D   ++V    M  K   P +   ++L   LCK ++ D+  
Sbjct: 419 PNDVTLGSVVFGLCRVGRVDDAWSLVVE--MSRKRHAPNVVVYTSLIDGLCKSDRMDDAC 476

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            V   +       D  +Y  ++  +   GR+ EA  +  EM  +G  PD S   +L EA
Sbjct: 477 VVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEA 535



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           ++ G   DV  YN L++   +        K++  +  SGCS NL T+ ILI    + G+ 
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSI 542
             AL     + E  VAPD   +  L+ GL ++ N   A ++F    +  VN D+    ++
Sbjct: 79  TRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTV 138

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA-----REVEMAIEHIK 597
           +S     LC+ G+   A +LL  +    G S   ++   +L +A      +VE A+E + 
Sbjct: 139 IS----GLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILD 194

Query: 598 WIQESSPT 605
            ++ + P 
Sbjct: 195 GMKLAGPA 202


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 220/492 (44%), Gaps = 41/492 (8%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           FF WA  +P F H+  + +S+L+             V K   V     D   Y  +I   
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGF 62

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            + +   +A ++  E+K     I P I    SL+  L    + D AL++F +M    V+ 
Sbjct: 63  CKAEQIPQAVNLLGEMK--AAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKP 120

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
               + V I   C+  KL    S  +  R  ++  +   V   +++H   K  + E+  +
Sbjct: 121 DAFLYTVVIGHLCKINKLDLAASYFE--RMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQ 178

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           + +E+  +   P+ + Y  V   +   G + +   ++++ +  G +P  + Y   I GL 
Sbjct: 179 IFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLC 238

Query: 308 VERRICEAKELGE--------VIV----------SGKFTIDDDVLNALIGSVSSIDPRSA 349
              R  EA+EL E        VIV          +GK      V   +I +  + DP S 
Sbjct: 239 KHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSY 298

Query: 350 IVFFNFMIEKGRV----------------PTLSTLSNLSKNLCKRNKSDE-LVEVYKVLS 392
            V    + +  RV                P +   + L   LCK  + +E  V + ++L 
Sbjct: 299 NVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLE 358

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
             D    + +Y+ ++  LC + RL +AY V+Q+M+R G  PDV  Y ++++A C+   L 
Sbjct: 359 TGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLD 418

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++L+ +M   GC+ ++  YNILI  +    +++ A+ +   M  +G+ P+  + ++++
Sbjct: 419 EARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIV 478

Query: 513 EGLCQETNLQAA 524
           +GLC+E+ ++ A
Sbjct: 479 DGLCKESRVEEA 490



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 15/235 (6%)

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F  DD     LI G   +     A+     M   G  PT+ T  +L + LC+ N +D+ +
Sbjct: 48  FRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKAL 107

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY----NSL 441
           +++  +       D   Y V++  LC   +L  A    + M + G  PD   Y    +SL
Sbjct: 108 QIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSL 167

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
            +AC  E       +++++M + G S  L TY  +++ + + G I+ AL L   +   G 
Sbjct: 168 FKACKWEQ----GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGR 223

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVN--HDVMLARSILSTFMISLCRRG 554
           +P  + Y++L++GLC+      A E+F  +     DV+    + ++F+  LC+ G
Sbjct: 224 SPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVI----VYTSFISGLCKAG 274



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 115/278 (41%), Gaps = 1/278 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T   L +  CK  +  + V +   + A      + ++  ++  LC      +A  +
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQI 109

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             +M    + PD   Y  ++   C+ + L  A   +++M  SGC  +  TY +L+    +
Sbjct: 110 FHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFK 169

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             + E   ++F  ML KG +P+  TY +++ G C+   +  A  +  +        + S+
Sbjct: 170 ACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSL 229

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE-HIKWIQE 601
            ST +  LC+      A +L    + D+     +   +  L  A +++ A   H+K I+ 
Sbjct: 230 YSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEA 289

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
                    +  +++    +   E   L+  A++ KC+
Sbjct: 290 GCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM 327



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 5/172 (2%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++      G  REAY V ++       PD   Y +L+   C+ + +  A  L  +M A
Sbjct: 21  NSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKA 80

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +G +  + T+  LI K  E+   + AL++FH M++  V PDA  YT ++  LC+   L  
Sbjct: 81  AGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDL 140

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISL---CR--RGHFLVATKLLRGLSSDL 570
           A   F + V    +  +   +  + SL   C+  +GH +    L +G S +L
Sbjct: 141 AASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPEL 192


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 218/493 (44%), Gaps = 43/493 (8%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           S QP+      ++  +L+ L  S Q+     +L ++K      D ++Y  +I    + K+
Sbjct: 5   SCQPD----AFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 135 TQKAFSVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             +AF    E VK +C    P +    +++  L   G   +A+K+ DEM  +G   +   
Sbjct: 61  FGQAFKFLAEMVKNHCL---PTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYT 117

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMING------------------ 225
           + V +   CE  KL +   ML+E+  R         NS I G                  
Sbjct: 118 YNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP 177

Query: 226 ----SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
                V    +I+G CK   ++ A ++LD++  R C PD + Y  + + F   G V    
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            +L    KLG  P    Y   +  L     I +A+++   +    FT D    NA I  +
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +  + A   F+ M+E+G  P  S+ S L + LCK+ + D+ + + +         D+
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQE-MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             Y V++  LC  GR  EA  +  + +  K  +PDV FYN ++++ C+   +  A ++  
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 417

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           QM    C  N+ T+NIL+        +  A  +   M+++G  PD  TY +L++ +C+  
Sbjct: 418 QMLERNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCG 476

Query: 520 NLQAAFEVFNKSV 532
              AA E+F ++V
Sbjct: 477 KSAAALELFEEAV 489



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 7/396 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L     ++ A ++   M   G       +   I  + +    GQ    L E+ K  
Sbjct: 16  LLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK-- 73

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           N  +   V    I+ G CK  R ++A K+LDE+R + C P+   Y ++ E       + E
Sbjct: 74  NHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDE 133

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALI 338
            + +L++    G  P    Y  FI GL    R+ EA++ L  + V+        V+N L 
Sbjct: 134 AKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGL- 192

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               S D  SA    + M  +G  P + T S+L    CK  + +  + +   +       
Sbjct: 193 --CKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRP 250

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +M +YN ++  L   G + +A  ++ EM+R+G  PDV  YN+ ++  C+ + ++ AK ++
Sbjct: 251 NMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVF 310

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D+M   GC+ N  +Y++L+ +  +  E++ A+ L     EK    D   YT LL+GLC+ 
Sbjct: 311 DRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKG 370

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRR 553
                A  +F+K ++  +          M+ S C+R
Sbjct: 371 GRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKR 406



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 186/426 (43%), Gaps = 9/426 (2%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  +  +     F + +   C + +L +   +L   R +E   +    I   +I G+ K 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLG--RMKEMGCVPDDAIYNALISGYSKA 58

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K   +AFK L E+    C P  + Y  + +     G   +   +L + R  G +P    Y
Sbjct: 59  KDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTY 118

Query: 300 REFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
              + GL  ER++ EAK+ L E+ V G F  D    N+ I  +   D         F+  
Sbjct: 119 NVIVEGLCEERKLDEAKKMLEEMAVRGYFP-DVVTYNSFIKGLCKCDRVDEAR--KFLAR 175

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
               P + + + +   LCK    D    +   ++      D+ +Y+ ++   C  G +  
Sbjct: 176 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A G++  M + G  P++  YNSL+ A  R   +  A+ +  +M   G + ++ +YN  I 
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              +   ++ A  +F  M+E+G  P+A++Y+ L+E LC++  L  A  +  ++     ++
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV 355

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-RGLSSDLGHSDS--HVILLKSLADAREVEMAIEH 595
              + +  +  LC+ G F  A  L  + L   +   D   + ++L S    R+++ A++ 
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 415

Query: 596 IKWIQE 601
            K + E
Sbjct: 416 HKQMLE 421



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 227/513 (44%), Gaps = 75/513 (14%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ I++ L   R+++    +L+++ V     D   Y   I  L +     +A      +
Sbjct: 117 TYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
                 + P++ +  +++  L   G +D+A +M D+M++RG     + +   I  FC+  
Sbjct: 177 P-----VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 204 KLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           ++ + + +LD + K   R N +   S++  L   G      + +A  +L E+  R   PD
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLG-----HIGKAEDMLVEMERRGFTPD 286

Query: 261 FIAYRIV------AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
            ++Y         AE  K   +VF+R V      + G  P  + Y      ++VE  +C+
Sbjct: 287 VVSYNACIDGLCKAERVKKAKAVFDRMV------ERGCTPNASSY-----SMLVEE-LCK 334

Query: 315 AKELGEVIV-----SGKFTIDDDVLNALIGSVSSIDPR---SAIVFFNFMIEKGRVPTLS 366
            KEL + I        K+ I D +L  ++        R   +  +F   + EK   P + 
Sbjct: 335 KKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVF 394

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             + +  + CKR + D+ ++++K +   +   ++ ++N++V  LC   RL +A  ++  M
Sbjct: 395 FYNVMLDSHCKRRQIDKALQIHKQMLERN-CCNVVTWNILVHGLCVDDRLSDAETMLLTM 453

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK------- 479
             +G  PD   Y +L++A C+      A +L+++    GC  ++ TY+ LI+        
Sbjct: 454 VDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMA 513

Query: 480 ---------------------FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQ 517
                                ++E G  +  L+LF  ++E  V P+A T+   + G L +
Sbjct: 514 EEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVK 573

Query: 518 ETNLQAAFEVFNKSVNH----DVMLARSILSTF 546
             +L  A  +F+++V      D+ +A +++  F
Sbjct: 574 AESLGKARGLFDRAVKGGFFPDLFVANTLIDVF 606



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 185/458 (40%), Gaps = 56/458 (12%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   +SY +++  L  S  +++   +L Q+     T D   Y  +I    +G   ++A  
Sbjct: 179 TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMG 238

Query: 141 VFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           + +  +K  C    P +   NSLL  L   G+I  A  M  EM  RG     + +   I 
Sbjct: 239 LLDSMLKLGCR---PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 198 KFCENAKLGQVLSMLDEV---------------------------------RKRENSMIN 224
             C+  ++ +  ++ D +                                 + RE   I 
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV 355

Query: 225 GSVIAVLIIHGFCKGKRVEEAF----KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
             ++  +++ G CKG R +EA     KVLDE   + C+PD   Y ++ +       + ++
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKVLDE---KICEPDVFFYNVMLDSHCKRRQI-DK 411

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
            + + K+           +   + GL V+ R+ +A+ +   +V   F  D      L+ +
Sbjct: 412 ALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 471

Query: 341 VSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           +      +A +  F   ++ G VP + T S L   L   N ++E   ++  L       D
Sbjct: 472 MCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------D 524

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLW 458
           +  +N M+     +G       +  E+    ++P+  +F   +     + + L  A+ L+
Sbjct: 525 VALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLF 584

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
           D+    G   +L   N LI  F++ G++E A R+F++M
Sbjct: 585 DRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 157/403 (38%), Gaps = 30/403 (7%)

Query: 41  LGLRDSL-----SPSLVARVINPYLLTHHSLALGFFNWAS------QQPNFTHSPLSYHS 89
           +GL DS+      P++VA   N  L   H L  G    A       ++  FT   +SY++
Sbjct: 237 MGLLDSMLKLGCRPNMVA--YNSLLGALHRL--GHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
            +  L  + ++    +V  ++     T ++S Y  ++  L + K    A ++  + +   
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKY 352

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           + +   +   LL  L   G  D A  +F + +  +  E     + V +   C+  ++ + 
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA 412

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           L +  ++ +R    +   V   +++HG C   R+ +A  +L  +      PDF+ Y  + 
Sbjct: 413 LQIHKQMLERNCCNV---VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLV 469

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           +     G       + ++  K G  P    Y   I GL+ E    EA  L        FT
Sbjct: 470 DAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL--------FT 521

Query: 329 -IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN-LSKNLCKRNKSDELV 385
            +D  + NA+I G   +      +  F  +IE    P   T    +S  L K     +  
Sbjct: 522 KLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKAR 581

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
            ++       +F D+   N ++      G L EA  +   MK+
Sbjct: 582 GLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/593 (22%), Positives = 254/593 (42%), Gaps = 79/593 (13%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNT 135
           +  F H+  +Y S+L+ L    + N ++++L +++ N   TL   VY   +    +    
Sbjct: 112 KQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKI 171

Query: 136 QKAFSVFNEVK-FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           Q+A   F  +  FNC+   P +   N+++ +L   GY + A K++  M  + VE     +
Sbjct: 172 QEAVDTFERMDLFNCD---PSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTY 228

Query: 193 GVFIWKFCENAKLGQVLSML--------------------------DEVRKRE--NSMIN 224
            + I  FC   +    L +L                          D  R RE  + M+ 
Sbjct: 229 TIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLE 288

Query: 225 GSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   +     ++H  CK   V E+ ++ D++  R   P+   + I  +     GS+  
Sbjct: 289 CCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDR 348

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L    + G+ P    Y   I GL  + R+ EA+E    +V+G F  +D   N++I 
Sbjct: 349 AVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIID 408

Query: 339 -----------------------------------GSVSSIDPRSAIVFFNFMIEKGRVP 363
                                              G     DP  A+  F   + KG  P
Sbjct: 409 GYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRP 468

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           ++   + L K LC++      +++   ++      D+ +YN++++ LC  G L +A  +I
Sbjct: 469 SIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLI 528

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            +   KG  PD+  YN+L++  CR+  L  A +L ++M++ G + ++ TYN L++   + 
Sbjct: 529 GDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKT 588

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            + E  + +F  M EKG AP+  TY +++E LC    +  A ++  +  +  +       
Sbjct: 589 AKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSF 648

Query: 544 STFMISLCRRGHFLVATKLLRGLSS--DLGHSD-SHVILLKSLADAREVEMAI 593
            T +   C+ G    A  L RG+    D+ H+  ++ I++ + ++   ++MA+
Sbjct: 649 GTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMAL 701



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 134/565 (23%), Positives = 230/565 (40%), Gaps = 82/565 (14%)

Query: 66  LALGFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS 119
           +  G+FN A +               +Y   +KS   + +  A   +L+ + V     ++
Sbjct: 201 VEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNA 260

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMF 177
             Y  ++    +  +  +A  +F+E+   C  + P++   N L+  L   G++  + ++F
Sbjct: 261 VAYCTVVTGFYEFGDNDRARELFDEMLECC--LCPDVTTFNKLVHALCKKGFVLESERLF 318

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVL--- 231
           D++  RGV  +   F +FI   C+   L + + +L  V +   R + +   +VI  L   
Sbjct: 319 DKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRK 378

Query: 232 ---------------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                                      II G+CK   V +A ++L +   +  KPD   Y
Sbjct: 379 SRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTY 438

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL------ 318
             +   F   G   +   V K     G+ P    Y   I GL  +  I  A +L      
Sbjct: 439 CSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAE 498

Query: 319 ------------------------------GEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
                                         G+ I  G    D    N L+ G    +   
Sbjct: 499 KGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIP-DIFTYNTLVDGYCRQLKLD 557

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           SAI   N M  +G  P + T + L   LCK  KS+E++E++K ++      ++ +YN ++
Sbjct: 558 SAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTII 617

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GC 466
             LC S ++ EA  ++ EMK KGL PDV  + +L+   C+   L  A  L+  M      
Sbjct: 618 ESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDV 677

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S    TYNI+IS FSE   ++ ALRLF  M + G  PD  TY  L++G C+  N+   ++
Sbjct: 678 SHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYK 737

Query: 527 VFNKSVNHDVMLARSILSTFMISLC 551
              +++    + + +     +  LC
Sbjct: 738 FLLENIEKGFIPSLTTFGRVLNCLC 762



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/418 (19%), Positives = 155/418 (37%), Gaps = 76/418 (18%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML-DEVR 216
           NS++      G + +A ++  +   +G +     +   +  FC++    Q +++  D + 
Sbjct: 404 NSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLG 463

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K     I   ++   +I G C+   +  A ++++E+  + CKPD   Y ++      MG 
Sbjct: 464 KGLRPSI---IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGC 520

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + +   ++      G  P    Y   + G   + ++  A EL   + S   T D    N 
Sbjct: 521 LSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNT 580

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ G   +      +  F  M EKG  P + T + + ++LC   K +E V++   + +  
Sbjct: 581 LLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKG 640

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQ------------------------------- 424
              D+ S+  +++  C  G L  AYG+ +                               
Sbjct: 641 LTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMA 700

Query: 425 -----EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
                EMK+ G DPD                                     TY +LI  
Sbjct: 701 LRLFSEMKKNGCDPDNY-----------------------------------TYRVLIDG 725

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           F + G +    +     +EKG  P  TT+  +L  LC E  +Q A  + +  V  D++
Sbjct: 726 FCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIV 783



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           E  +LGEV + G+ T D D+++        +  R+  +      ++G   TL T  ++ +
Sbjct: 71  EDDDLGEVKMEGRRT-DRDLVDVFCMKYEDVCIRNLQLIKK--TKQGFKHTLFTYKSMLQ 127

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMES-YNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
            L    K +E+  +   + +N   T +E  Y   + F    G+++EA    + M     D
Sbjct: 128 KLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCD 187

Query: 433 PDVSFYNSLM-----------------------------------EACCREDLLRPAKKL 457
           P V  YN++M                                   ++ CR      A +L
Sbjct: 188 PSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRL 247

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              M   GC  N   Y  +++ F E G+ + A  LF  MLE  + PD TT+  L+  LC+
Sbjct: 248 LRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCK 307

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +  +  +  +F+K +   V       + F+  LC+ G    A +LL  +S +
Sbjct: 308 KGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSRE 359


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 207/496 (41%), Gaps = 59/496 (11%)

Query: 51  LVARVINPYLLTHHSLALGFFN----------WASQQPNFTHSPLSYHSILKSLSLSRQI 100
           +VA+   P ++    L  GFFN              + +      +Y++++     + +I
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRI 60

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV--KFNCEDIGPEICN 158
            +  +VL ++K    + D   +  +I +         A  VF E+    NC+   P +  
Sbjct: 61  ESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCK---PTLIT 117

Query: 159 SLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
             + + A   +G ID ALK+ DEM  RG+E  T  + V                      
Sbjct: 118 YTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNV---------------------- 155

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                          I  G CK  +V+ AF+ +  L  R CKPD I Y I+       G 
Sbjct: 156 ---------------ITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGK 200

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E E  + +    G  P    Y   I  L  + +I E+  L +V+     T D    + 
Sbjct: 201 WDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP 260

Query: 337 LIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LI +      +D   AI F + MI  G +P +   + +   LCK    D  VE++  L  
Sbjct: 261 LIAAFCREGKLD--MAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDE 318

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ SYN M+S L +SG    A G+I +M  KG+DPDV  YNSL+   CR+ ++  
Sbjct: 319 VGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDE 378

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L   M +     N+ +Y  ++    +   I+ A+ +   M+E G  P+ TTYT L+E
Sbjct: 379 AIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIE 438

Query: 514 GLCQETNLQAAFEVFN 529
           G+    +   A E+ N
Sbjct: 439 GIGFSGSRTQAMELAN 454



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 201/463 (43%), Gaps = 50/463 (10%)

Query: 150 EDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           +D  P++  C  L+    +   ID A ++   +   G +     +   I  FC+  ++  
Sbjct: 4   KDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIES 62

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRI 266
             ++LD ++++  S     V   ++I  FC   +++ A KV +EL +   CKP  I Y I
Sbjct: 63  AKTVLDRMKRKGFS--PDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + E + L G + E   +L +    G+ P T  Y     GL  E ++  A E         
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFE--------- 171

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                                    F   +  +G  P + T + L + L  + K DE  +
Sbjct: 172 -------------------------FVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEK 206

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
               + +     ++ +Y++++S LC  G++ E+  +++ MK KGL PD   Y+ L+ A C
Sbjct: 207 WMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFC 266

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           RE  L  A +  D M   G   ++  YN +++   + G  + A+ +F  + E G  P+ +
Sbjct: 267 REGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVS 326

Query: 507 TYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           +Y ++L  L    +   A     ++ +K ++ DV+   S++S     LCR G    A  L
Sbjct: 327 SYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLIS----CLCRDGMVDEAIGL 382

Query: 563 LRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQESS 603
           L  + S     +  S+  +L  L  A  ++ AIE +  + E+ 
Sbjct: 383 LADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENG 425


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 243/557 (43%), Gaps = 48/557 (8%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  L   LV  V+   +  H  + + FF WA ++ NF H   +Y 
Sbjct: 74  KWGPDAEKALEVLKLK--LDIRLVREVLKIDVEVH--VKIQFFKWAGKKRNFEHDSTTYM 129

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           ++++ L  +R +  +   ++ +  +   +  S    I+  L + K   KA S+F +VK  
Sbjct: 130 ALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGR 189

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQ 207
                    NS++ +L  +G+ +   ++++EM   G  F  T+ +   I  F +  +   
Sbjct: 190 KCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDS 249

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            + + DE++  EN +   + I   ++  + K  +VEEA  ++ E+R+R C P    Y  +
Sbjct: 250 AVRLFDEMK--ENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTEL 307

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                  G V +   V K   K G  P        I  L    R+ EA EL E +     
Sbjct: 308 IRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNC 367

Query: 328 TIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE-- 383
           T +    N +I S+      P  A  +   M + G VP+  T S L    CK N+ ++  
Sbjct: 368 TPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKAL 427

Query: 384 ------------------------LVEVYKVLSANDYFTDMES---------YNVMVSFL 410
                                   L +  +  +AN+ F +++          Y VM+   
Sbjct: 428 LLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHF 487

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              GR  EA G+  EMK+ G  PDV  YN+L+    R D++  A  L+  M  +GC+ ++
Sbjct: 488 GKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDI 547

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----E 526
            ++NI+++  +  G  + A+ +F  M    + PDA +Y ++L  L +    + A     E
Sbjct: 548 NSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKE 607

Query: 527 VFNKSVNHDVMLARSIL 543
           + +K   +D++   SIL
Sbjct: 608 MNSKGFEYDLITYSSIL 624


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 178/377 (47%), Gaps = 3/377 (0%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C+S++  L   G +D+AL + + M  RG         + I + C+  K+ +    L  + 
Sbjct: 52  CHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMN 111

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMG 275
           +  ++  +       +++  CK K+V +AF +   +   R   PD ++Y I+ + F  + 
Sbjct: 112 RTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKID 171

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E + K+   L   P    Y  F+ GL+ + RI +A+ + E ++S   + D    +
Sbjct: 172 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYS 231

Query: 336 ALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI   S +     A   F  MI +G  P   T + L   LCK +K DE  E+++ +   
Sbjct: 232 TLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 291

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  +Y  ++   C  G++ +A  V  EM  KG DPDV  YN L++   R      A
Sbjct: 292 GCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEA 351

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLE 513
           ++L+  M +  C  +  ++NI+I   S+   ++ A+ +F  M  + G +PD  TY SL+ 
Sbjct: 352 RQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIF 411

Query: 514 GLCQETNLQAAFEVFNK 530
           GLC E  L  A +VF +
Sbjct: 412 GLCGEQRLSEAMKVFKE 428



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 40/274 (14%)

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--SANDYFTDMESYNV 405
           SA+     MI++G  P ++T S L   LCK +K  E  E  + +  + +   +   SYN 
Sbjct: 67  SALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNS 126

Query: 406 MVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-- 462
           +++ LC + ++ +A+ +   M   + + PDV  Y+ L++  C+ D L  A+KL+ QM   
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 463 ---------------------------------ASGCSGNLKTYNILISKFSEVGEIEGA 489
                                            ++GCS ++ TY+ LI  FS   + + A
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQA 246

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             LF  M+ +G  P+A TY  LL GLC+E+    A E+F K V       +   +T +  
Sbjct: 247 HELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYG 306

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
            C  G    A ++   + S  GH D  V+    L
Sbjct: 307 FCNVGKIEQAVEVFDEMVSK-GH-DPDVVAYNCL 338



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 168/402 (41%), Gaps = 7/402 (1%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           HS+++ L  + ++++  S+L+ +       D + +  +I  L +    Q+A      +  
Sbjct: 53  HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 148 NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEM-SHRGVEFSTIGFGVFIWKFCENAK 204
                       NSLL  L     +  A  +F  M S R V    + + + I  FC+  +
Sbjct: 113 TISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           LG+   +  ++    N + N +     + +G  +  R+ +A  V +E+    C PD I Y
Sbjct: 173 LGRAEKLYKQMIDL-NCVPNVTTYNAFL-NGLMRKGRIADAQGVYEEMISAGCSPDVITY 230

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   F L     +   + +     G  P    Y   + GL  E +  EA EL   +V 
Sbjct: 231 STLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 290

Query: 325 GKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D      L+    ++     A+  F+ M+ KG  P +   + L K   +  K  E
Sbjct: 291 RGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 350

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLM 442
             ++++V+ + +   D  S+N+M+  L  + RL +A  V + M++  G  PD+  YNSL+
Sbjct: 351 ARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 410

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
              C E  L  A K++ ++     S +   +N+L+      G
Sbjct: 411 FGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 224/507 (44%), Gaps = 55/507 (10%)

Query: 82  HSP--LSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           H P  ++Y +I+  +  L   ++A++ +L+++  ++I  +  +Y  I+  L +  N  KA
Sbjct: 41  HQPDAVTYGTIVNGMCKLGDTVSALN-MLRKMDESQIKANVVIYSAIVDRLCKDGNHIKA 99

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            ++F E+    + I P +   N ++    S G   +A ++  +M  R ++   + F   I
Sbjct: 100 QNIFTEMHE--KGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALI 157

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             F +  K+     +  E+ +R  ++   ++    +I GFCK  R+E+A  + D +  + 
Sbjct: 158 NAFVKEGKVSGAEELYREMLRR--NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKG 215

Query: 257 CKPDFI-----------AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
           C PD I           A R +   F  +G+V   + + ++    GV+P        + G
Sbjct: 216 CSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAG 275

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L    ++ +A E+ +V    K  +D    N +I                           
Sbjct: 276 LCENGKLEKALEMFKVFQKSKMDLDTATCNIII--------------------------- 308

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                    +CK NK DE  +++  L  N   TD+ +YN+++      G    A  +  E
Sbjct: 309 -------NGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG+ P    YNS+++  C+++ L  A+++ D M + GCS ++ T++ LI  + + G 
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++  L LF  M ++G+  D  TY +L+ G C+  +L  A ++F + V+  V        +
Sbjct: 422 VDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRS 481

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGH 572
            +  LC +        +L  L   + H
Sbjct: 482 MLAGLCTKAELQKGLTMLEDLQKSVDH 508



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 128/270 (47%), Gaps = 19/270 (7%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+   + M+E+G  P   T   +   +CK   +   + + + +  +    ++  Y+ +V 
Sbjct: 29  ALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVD 88

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G   +A  +  EM  KG+ P+V  YN +++  C       A++L   M       
Sbjct: 89  RLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDP 148

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ T++ LI+ F + G++ GA  L+  ML + + P   TY+S+++G C+ + L+ A  +F
Sbjct: 149 DVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMF 208

Query: 529 N----KSVNHDVMLARSILST-------FMISLCRRGHFLVATKLLR-----GLSSDLGH 572
           +    K  + D++   +++          +   C+ G+  VA  L +     G+S D+  
Sbjct: 209 DLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVT 268

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQES 602
            ++   LL  L +  ++E A+E  K  Q+S
Sbjct: 269 CNT---LLAGLCENGKLEKALEMFKVFQKS 295



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 128/308 (41%), Gaps = 45/308 (14%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G C+  RV +A  ++D +     +PD + Y  +      +G       +L+K  +  
Sbjct: 16  LMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQ 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           +          I   IV+R   +   +                              A  
Sbjct: 76  IKANV-----VIYSAIVDRLCKDGNHI-----------------------------KAQN 101

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F  M EKG  P + T + +    C   K  +  ++ + +   +   D+ +++ +++   
Sbjct: 102 IFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFV 161

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G++  A  + +EM R+ + P    Y+S+++  C+   L  AK ++D M + GCS ++ 
Sbjct: 162 KEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDII 221

Query: 472 TYNILIS-----------KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           T N LI             F +VG +  A  LF  M+  GV+PD  T  +LL GLC+   
Sbjct: 222 TLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGK 281

Query: 521 LQAAFEVF 528
           L+ A E+F
Sbjct: 282 LEKALEMF 289



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 106/236 (44%), Gaps = 12/236 (5%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+E G    + T + L   LC+  +  + + +   +    +  D  +Y  +V+ +C  G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              A  ++++M    +  +V  Y+++++  C++     A+ ++ +M   G   N+ TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I  +   G+   A +L  +M+E+ + PD  T+++L+    +E  +  A E++ + +  +
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADA 586
           +       S+ +   C+      A  +      +G S D       +I L +L D 
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPD-------IITLNTLIDG 229


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 3/408 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G ++ A ++   M   G + ++  F + I  +C    +G+ L +LDE+ K
Sbjct: 283 NVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 342

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  +++  +V    +I+G C  K +  A K+L+++     KP+ + Y  +   +   G +
Sbjct: 343 R--NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L      GVAP    Y   I  L    ++ EA      I       D     A 
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 338 IGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S     + A  +F+ M++ G +P     + L     K     E + +++ L A   
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+++ +  +  L  +GR++EA  V  E+K KGL PDV  Y+SL+   C++  +  A +
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 580

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G + N+  YN L+    + G+I+ A +LF  M EKG+ PD+ TY+++++G C
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 640

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +  N+  AF +F++  +  V     + +  +   C+ G    A  L R
Sbjct: 641 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 230/526 (43%), Gaps = 43/526 (8%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   S +SY +++  L   + ++  + +L+++  + +  +  VY  +I         
Sbjct: 341 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A  + + +  +C  + P+I C N++++ L+  G ++ A     E+  RG++   + FG
Sbjct: 401 EEARRLLDGM--SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 458

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI--------------------- 232
            FI  + +  K+ +     DE+      M N  +  VLI                     
Sbjct: 459 AFILGYSKTGKMTEAAKYFDEMLDH-GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA 517

Query: 233 -------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                        IHG  K  RV+EA KV  EL+ +   PD   Y  +   F   G V E
Sbjct: 518 LGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV-E 576

Query: 280 REVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +   L  +  L G+AP    Y   + GL     I  A++L + +       D    + +I
Sbjct: 577 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 636

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G   S +   A   F+ M  KG  P     + L    CK    ++ + +++ +    + 
Sbjct: 637 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA 696

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           T + S+N ++   C S +++EA  + QEM  K + PD   Y ++++  C+   +  A  L
Sbjct: 697 TTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 755

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M       +  TY  L+  ++++G+      LF  M+ KGV PD  TY  ++   C+
Sbjct: 756 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCK 815

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           E NL  AF++ ++ V   ++   +I    + +LC+R     A+KLL
Sbjct: 816 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLL 861



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 209/472 (44%), Gaps = 19/472 (4%)

Query: 103 IDSVL--KQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICN 158
           ID VL  K V V+  I ++   Y  +I  L +    +KA  +    +   C+       N
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKP------N 313

Query: 159 SLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           S    L  +GY     +  AL++ DEM  R +  S + +G  I   C    L     +L+
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           ++    + +    V+   +I G+    R+EEA ++LD +      PD   Y  +      
Sbjct: 374 KMTF--SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 431

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E    L + +  G+ P    +  FILG     ++ EA +  + ++      ++ +
Sbjct: 432 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 491

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              LI G   + +   A+  F  +   G +P + T S     L K  +  E ++V+  L 
Sbjct: 492 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 551

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+ ++S  C  G + +A+ +  EM  KG+ P++  YN+L++  C+   ++
Sbjct: 552 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 611

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+KL+D M   G   +  TY+ +I  + +   +  A  LFH M  KGV P +  Y +L+
Sbjct: 612 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            G C+E +++ A  +F + +        S  +T +   C+      A++L +
Sbjct: 672 HGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQ 722



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 185/458 (40%), Gaps = 54/458 (11%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           ++  Y  I   L + K   +A   F E++          C++L+     +G ID  L++ 
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 267

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           D M   G+  + I + V I   C+  K+    ++L  +  +  + NS         L+I 
Sbjct: 268 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT-----FCLLIE 322

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+C+   +  A ++LDE+  R   P  ++Y  +         +     +L+K    G+ P
Sbjct: 323 GYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 382

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y   I+G   E RI EA+ L + +       D    NA+I  +S            
Sbjct: 383 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS------------ 430

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
              + G++   ST                L+E+           D  ++   +     +G
Sbjct: 431 ---KAGKMEEASTY---------------LLEI----QGRGLKPDAVTFGAFILGYSKTG 468

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA     EM   GL P+   Y  L+    +   L  A  ++  + A G   +++T +
Sbjct: 469 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 528

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
             I    + G ++ AL++F  + EKG+ PD  TY+SL+ G C++  ++ AFE+      H
Sbjct: 529 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL------H 582

Query: 535 DVMLARSILSTFMI------SLCRRGHFLVATKLLRGL 566
           D M  + I     I       LC+ G    A KL  G+
Sbjct: 583 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 620



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 199/439 (45%), Gaps = 18/439 (4%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +++++LS+ R ++A+  VL  V+              I  L++    Q+A  VF+E+K  
Sbjct: 504 NLMEALSIFRHLHAL-GVLPDVQTCSA---------FIHGLLKNGRVQEALKVFSELKE- 552

Query: 149 CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            + + P++   +SL++     G ++ A ++ DEM  +G+  +   +   +   C++  + 
Sbjct: 553 -KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 611

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   + D +   E  +   SV    +I G+CK + V EAF +  E+  +  +P    Y  
Sbjct: 612 RARKLFDGMP--EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNA 669

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G + +   + ++  + G A  T  +   I G     +I EA +L + +++ +
Sbjct: 670 LVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ 728

Query: 327 FTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D      +I     +     A + F  M E+  +    T ++L     K  +S E+ 
Sbjct: 729 IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVF 788

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +++ + A     D  +Y +++   C    L EA+ +  E+  KG+    + ++ L+ A 
Sbjct: 789 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 848

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+ + L  A KL D+M   G   +L   + L+  F E G+++ A R+F  +   G+ PD 
Sbjct: 849 CKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDT 908

Query: 506 TTYTSLLEGLCQETNLQAA 524
           TT   L+ G   +T+ + A
Sbjct: 909 TTLIDLVNGNLNDTDSEDA 927



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+   Y I+         + E ++  ++ +K G+ P  N     I G + E  I E   +
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            +V+VS    I+    N LI  +        A      MI  G  P   T   L +  C+
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 326

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +     +E+   +   +      SY  M++ LC    L  A  ++++M   GL P+V  
Sbjct: 327 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 386

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y++L+     E  +  A++L D M  SG + ++  YN +IS  S+ G++E A      + 
Sbjct: 387 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 446

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            +G+ PDA T+ + + G  +   +  A + F++ ++H +M    + +  +    + G+ +
Sbjct: 447 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 506

Query: 558 VATKLLRGLSS 568
            A  + R L +
Sbjct: 507 EALSIFRHLHA 517


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 148/620 (23%), Positives = 259/620 (41%), Gaps = 53/620 (8%)

Query: 14  SQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLS---PSLVARVINPYLLTHHSLALGF 70
           +  + + +N      +W  LL +      LR SL+   P  + +++   L    S+ L  
Sbjct: 41  NDTVFNNTNGLDSGTEWERLL-KPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMEL-- 97

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F WA  Q  + H    Y+ ++  L  + +   ID++L Q+K   I    S++  I+    
Sbjct: 98  FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYG 157

Query: 131 QGKNTQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           +     +A  +  +++  ++CE       N +L VL +         +F EM  +G+  +
Sbjct: 158 RAGLPGQATRLLLDMRGVYSCEPTFRSY-NVVLDVLLAGNCPKVVPNVFYEMLSKGISPT 216

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLI------------- 232
              FGV +   C   ++    ++L ++ +     N+++  ++I  L              
Sbjct: 217 VYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLE 276

Query: 233 -----------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
                            IHG CK  R+ EA K++D + +R   P+   Y ++      MG
Sbjct: 277 EMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMG 336

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVL 334
            V E  ++L K       P    +   I G +   R+ EAK  + E ++S     D    
Sbjct: 337 KVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 392

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI G        SA    N M  KG  P + T + L    CK  + +E   V   +S 
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 452

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +   YN ++S LC   ++++A  +  +M  KG  PD+  +NSL+   C+ +    
Sbjct: 453 KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEE 512

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L+  M   G   N  TYN LI  F   G ++ AL+L ++ML +G   D  TY  L++
Sbjct: 513 ALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIK 572

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSS 568
            LC+  N++    +F   ++  +       +  +  LCR G+   A + L     RGL+ 
Sbjct: 573 ALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 632

Query: 569 DLGHSDSHVILLKSLADARE 588
           D+   +S +  L     A+E
Sbjct: 633 DIVTYNSLINGLCKTGRAQE 652



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 193/413 (46%), Gaps = 14/413 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT +  +Y  ++  L    +++    +L +V    + L    +  +I   +      +A 
Sbjct: 318 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEAK 373

Query: 140 SVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +V +E   +    GP+I   N+L+  L   GY+ +A ++ +EM  +G E + I + + I 
Sbjct: 374 AVMHESMLSV-GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 432

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +FC+  +L +  ++LDE+  +  ++   +V    +I   CK ++V++A  +  ++  + C
Sbjct: 433 RFCKEGRLEEARNVLDEMSGKGLAL--NAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 490

Query: 258 KPDFIAYRIVAEEFKLMG-SVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEA 315
           KPD   +  +   F L   + FE  + L +   L GV   T  Y   I   +    + EA
Sbjct: 491 KPDIFTFNSLI--FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 548

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L   ++     +DD   N LI ++  + +    +  F  M+ KG  P   + + L   
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+       +E  + +       D+ +YN +++ LC +GR +EA  +  +++ +G+ PD
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
              YN+L+   C+E +   A  L  +   SG   N  T+ IL+S F + G+ E
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 202/448 (45%), Gaps = 17/448 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G I +AL +FD+M HRG   S + + + +   C+ +   Q +++LDE+R 
Sbjct: 255 NPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRA 314

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +  E  ++  +V+    I+  C    V+EA  +L  L    CKPD + Y  V +   L G
Sbjct: 315 KGCEPDIVTYNVL----INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLK--SLCG 368

Query: 276 SVFEREV--VLKKKRKLGVAPRTNDYREFILGL----IVERRICEAKELGEVIVSGKFTI 329
           S   +EV  +L +      AP    +   +  L    +V+R I     + E         
Sbjct: 369 SERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVT 428

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
              +L+ L   V  +D   A+   + +   G  P     + + K LC   + +   E+  
Sbjct: 429 YSSILDGLC-DVGRVD--DAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMA 485

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +  +D   D  ++N +V+ LC  G +  A  V+++M   G  PD+  YN +++  C E 
Sbjct: 486 EMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNES 545

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +L   + + GC  ++ T+N L+     V   E A +L  NM+     PD  T+ 
Sbjct: 546 CIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFN 605

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +++  LCQ+  L  A E       +  +   S  S  + +L + G    A +LL G+++ 
Sbjct: 606 TVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG 665

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIK 597
                ++  ++ +L  A ++E A++ ++
Sbjct: 666 TPDLITYNTVISNLTKAGKMEEALDLLR 693



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/518 (22%), Positives = 225/518 (43%), Gaps = 44/518 (8%)

Query: 128 SLIQGKNTQKAFSVFNEVKF----NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH- 182
           SL+Q     +A  +F+ +      NC  + P  CN L+  L SDG + +A ++F  +   
Sbjct: 159 SLVQRGEIDEALVLFDSMASGGGRNCPPVVP--CNILIKRLCSDGRVSDAERVFAALGPS 216

Query: 183 --------------------------RGVEF--STIGFGVFIWKFCENAKLGQVLSMLDE 214
                                      G+ F   T  F   I   C   ++   L++ D+
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDD 276

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +  R  S     V   +++   CK     +A  +LDE+R + C+PD + Y ++       
Sbjct: 277 MLHRGCS--PSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G V E   +L      G  P    Y   +  L    R  E +EL   + S     D+   
Sbjct: 335 GDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTF 394

Query: 335 NALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           N ++ S+     +D   AI   + M E G V  + T S++   LC   + D+ VE+   L
Sbjct: 395 NTIVTSLCQQGLVD--RAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            +     D  +Y  ++  LC++ +   A  ++ EM      PD   +N+++ + C++ L+
Sbjct: 453 KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLV 512

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A ++ +QM  +GCS ++ TYN +I        I+ A+ L  ++   G  PD  T+ +L
Sbjct: 513 DRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTL 572

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-- 569
           L+GLC     + A ++    +  +        +T + SLC++G    A + L+ ++ +  
Sbjct: 573 LKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGC 632

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607
           + +S ++ I++ +L  A + + A+E +  +   +P ++
Sbjct: 633 VPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLI 670



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/546 (21%), Positives = 228/546 (41%), Gaps = 48/546 (8%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     +++ ++++L +  +I    +V   +     +     Y  ++ +  +    ++A 
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 140 SVFNEVKF-NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           ++ +E++   CE   P+I   N L+  + ++G +D AL +   +   G +   + +   +
Sbjct: 307 ALLDEMRAKGCE---PDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVL 363

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C + +  +V  +L E+    N+     V    I+   C+   V+ A +V+D +    
Sbjct: 364 KSLCGSERWKEVEELLAEMTS--NNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG 421

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C  D + Y  + +    +G V +   +L + +  G  P T  Y   + GL    +   A+
Sbjct: 422 CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAE 481

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           EL   ++      D+   N ++ S+     +D   AI     M E G  P + T + +  
Sbjct: 482 ELMAEMLCSDCPPDEVTFNTVVASLCQKGLVD--RAIRVVEQMSENGCSPDIVTYNCIID 539

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC  +  D+ +E+   L +     D+ ++N ++  LC   R  +A  ++  M R    P
Sbjct: 540 GLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPP 599

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN------------------------ 469
           D   +N+++ + C++ LL  A +    M  +GC  N                        
Sbjct: 600 DELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELL 659

Query: 470 ---------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
                    L TYN +IS  ++ G++E AL L   M+  G+ PD TTY SL  G+C+E  
Sbjct: 660 SGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDG 719

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVI 578
              A  +  +  +  +    +  +  ++  CR     +A      + S     D  ++VI
Sbjct: 720 TDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVI 779

Query: 579 LLKSLA 584
           LL++LA
Sbjct: 780 LLEALA 785



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/499 (23%), Positives = 217/499 (43%), Gaps = 22/499 (4%)

Query: 33  LLEQTLHQLGLRDSLS--PSLVARVINPYLLTHHSLALGFFNWA---------SQQPNFT 81
           LL+ T  + G R +++    + A+   P ++T++ L     N           S  P+  
Sbjct: 292 LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
             P  ++Y  +LKSL  S +   ++ +L ++  N    D   +  I+ SL Q     +A 
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAI 411

Query: 140 SVFNEV-KFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            V + + +  C  DI     +S+L  L   G +D+A+++   +   G +  TI +   + 
Sbjct: 412 EVVDHMSEHGCVADI--VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLK 469

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             C   +  +   ++ E+   +       V    ++   C+   V+ A +V++++    C
Sbjct: 470 GLCSTEQWERAEELMAEMLCSDCP--PDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD + Y  + +       + +   +L   +  G  P    +   + GL    R  +A++
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           L   ++      D+   N +I S+      + AI     M E G VP  ST S +   L 
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALL 647

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  K+   +E+   ++  +   D+ +YN ++S L  +G++ EA  +++ M   GL PD +
Sbjct: 648 KAGKAQAALELLSGMT--NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTT 705

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y SL    CRED    A ++  ++  +G S +   YN ++  F      + A+  F +M
Sbjct: 706 TYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHM 765

Query: 497 LEKGVAPDATTYTSLLEGL 515
           +  G  PD +TY  LLE L
Sbjct: 766 VSSGCMPDESTYVILLEAL 784


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 190/419 (45%), Gaps = 49/419 (11%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           PE CN++L+ L     +D A+++F E+ H+ V      + + +   C+  ++     + D
Sbjct: 232 PEACNAVLSRLP----LDEAIELFQELPHKNV----CSYNILLKALCDAGRVKDARQLFD 283

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------ 267
           E+    + +  G     ++IHG C    +E A K+LDE+     +P+   Y  V      
Sbjct: 284 EMASAPDVVTYG-----ILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCD 338

Query: 268 ----AEEFKLMGSVFEREVVLKKK-------------------------RKLGVAPRTND 298
               ++  +++  + +R+V+L +                          ++ G+A     
Sbjct: 339 KGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 398

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I GL     + EA++L + + + +  +D+     LI G         A    N M+
Sbjct: 399 YTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMV 458

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G  P + T + L+  LCK+       E+   +S      +  +YN +++ LC +G L 
Sbjct: 459 QRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLE 518

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A   + +M    L PDV  Y +L++A C+   L  A  L  +M   G    + TYN+L+
Sbjct: 519 QAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLM 578

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           + F   G +EG  +L   MLEK + P+A TY SL++  C E N+++  E++    + DV
Sbjct: 579 NGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDV 637



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/481 (21%), Positives = 191/481 (39%), Gaps = 39/481 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +LK+L  + ++     +  ++       D   Y  +I         + A  + +E+
Sbjct: 261 SYNILLKALCDAGRVKDARQLFDEMASAP---DVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                +    +  S++A+L   G+I +AL++ ++M  R V      +   +  FC    L
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDL 377

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                  DE++++   +    V    +I+G C+   +EEA K+L E+  R    D + Y 
Sbjct: 378 VSARRWFDEMQRK--GLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYT 435

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ + +   G + E   +     + GV P    Y     GL  +  +  A EL       
Sbjct: 436 VLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANEL------- 488

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                       + M  KG      T ++L   LCK    ++ +
Sbjct: 489 ---------------------------LHEMSNKGLELNACTYNSLINGLCKAGYLEQAM 521

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                +       D+ +Y  ++  LC SG L  A+ ++QEM  KG+ P +  YN LM   
Sbjct: 522 RTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 581

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +   KKL D M       N  TYN L+ ++     ++    ++  M  + V P+ 
Sbjct: 582 CMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNE 641

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY  L++G C+  N++ A    ++ +     L  +  S  +  L ++  F+ A +L   
Sbjct: 642 NTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHD 701

Query: 566 L 566
           +
Sbjct: 702 M 702



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           Y   +  L    R+ +A++L + + S    +   +L  + G  +  +  +A+   + M+ 
Sbjct: 262 YNILLKALCDAGRVKDARQLFDEMASAPDVVTYGIL--IHGHCALGELENAVKLLDEMVA 319

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G  P  +  +++   LC +    + + V + +       D   Y  ++S  C  G L  
Sbjct: 320 GGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVS 379

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A     EM+RKGL  D   Y +++   CR   L  A+KL  +M+A     +  TY +LI 
Sbjct: 380 ARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLID 439

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + + G++  A ++ + M+++GV P+  TYT+L +GLC++ ++QAA E+ ++  N  + L
Sbjct: 440 GYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLEL 499

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
                ++ +  LC+ G+   A + +  + +     D  ++  L+ +L  + +++ A
Sbjct: 500 NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRA 555



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 41/264 (15%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q   T + ++Y ++   L     + A + +L ++    + L++  Y  +I  L +    +
Sbjct: 459 QRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLE 518

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A     ++   C  + P++    +L+  L   G +D A  +  EM  +G++ + + + V
Sbjct: 519 QAMRTMADMDTAC--LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +                                     +GFC   RVE   K+LD +  
Sbjct: 577 LM-------------------------------------NGFCMSGRVEGGKKLLDWMLE 599

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +   P+   Y  + +++ +  ++     + K  R   V P  N Y   I G    R + E
Sbjct: 600 KNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKE 659

Query: 315 AKELGEVIVSGKFTIDDDVLNALI 338
           A    + ++   F +     +ALI
Sbjct: 660 ALYFHDEMIQKGFRLTATSYSALI 683



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 43/170 (25%)

Query: 469 NLKTYNILISKFSE--------------------------------VGEIEGALRLFHNM 496
           N+ +YNIL+    +                                +GE+E A++L   M
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +  GV P+AT YTS++  LC +  +  A  V    V   V+L  ++ +T +   C +G  
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDL 377

Query: 557 LVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           + A +       +GL++D     ++  ++  L  A E+E   E  K +QE
Sbjct: 378 VSARRWFDEMQRKGLATD---GVTYTTMINGLCRAVELE---EAEKLLQE 421


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 226/522 (43%), Gaps = 51/522 (9%)

Query: 118 DSSVYRFIIPSLIQG---KNTQKAFSVFNEVKFNCEDIGPEIC----NSLLAVLASDGYI 170
           D+S   F +    +G    N   A + FN++      + P  C    N LLA L    + 
Sbjct: 65  DASFDNFAVRDKCKGGSFSNFDDALAYFNQMV----HMNPFPCITQFNQLLAALVRMKHY 120

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSM 222
           D+ + ++ +M   GV  S     + I   C    +G   S+L ++ K          N++
Sbjct: 121 DSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTL 180

Query: 223 INGSVIA-------------------------VLIIHGFCKGKRVEEAFKVLDELRIREC 257
           ING  I                           +I++G CK  +   A   + ++   +C
Sbjct: 181 INGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDC 240

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           +P+ ++Y I+ +       V E   +    R +G++P    Y   I G+    +  +A  
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI 300

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           L + ++      D    + L+ ++        A+  F  MI+    P + T S+L   +C
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K +   E   +   + + +   D+ ++++ V   C  G + EA  +I  M  +GL P+V 
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVV 420

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YNSLM+  C    +  A+K++D M   GC+ ++ +YNILI  + +   I+ A +LF  M
Sbjct: 421 TYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEM 480

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
             KG+ P++ T+T+L+ GLCQ     AA E+F K  +H         ST +   C+ GH 
Sbjct: 481 SHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540

Query: 557 LVATKLLRGL-SSDLGHSDSHV---ILLKSLADAREVEMAIE 594
             A  L   L  S L    +HV   ILL  +  A ++E A E
Sbjct: 541 DEALALFEALKKSQL--KPNHVICKILLGGMCKAGKLEDAKE 580



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 168/376 (44%), Gaps = 21/376 (5%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G    A+    +M     E   + + + I   C+N  + + + +   +R      I
Sbjct: 219 LCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIG---I 275

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           + +V+    +I+G C   + ++A  +  E+     KPD + + I+ +     G V E   
Sbjct: 276 SPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALS 335

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK-------FTIDDDVL- 334
           V  K  ++ + P    Y   I G+       E+  L   ++S         F+I  DV  
Sbjct: 336 VFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFC 395

Query: 335 -NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
              ++    SI         N MIE+G  P + T ++L    C  ++ DE  +V+ ++  
Sbjct: 396 KKGMVSEAQSI--------INLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVN 447

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+ SYN+++   C S R+ EA  +  EM  KGL P+   + +L+   C+      
Sbjct: 448 KGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYA 507

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK+L+ +M + GC  +L TY+ L+S F + G ++ AL LF  + +  + P+      LL 
Sbjct: 508 AKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLG 567

Query: 514 GLCQETNLQAAFEVFN 529
           G+C+   L+ A E+F+
Sbjct: 568 GMCKAGKLEDAKELFS 583



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 165/386 (42%), Gaps = 40/386 (10%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  II SL + +   +A  +F  ++     I P +   NSL+  + + G    A  +F E
Sbjct: 247 YSIIIDSLCKNRLVNEAVDLFYHMR--SIGISPTVVTYNSLIYGMCNSGQWKQASILFKE 304

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M    ++   + F + +   C+   + + LS+  ++   + +M    V    +IHG CK 
Sbjct: 305 MLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMI--QIAMEPDIVTYSSLIHGVCKS 362

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              +E+  +L+E+  R  +PD + + I  + F   G V E + ++    + G+ P    Y
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
              + G  +  ++ EA+++                                  F+ M+ K
Sbjct: 423 NSLMDGYCLHSQMDEARKV----------------------------------FDIMVNK 448

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + + + L K  CK  + DE  +++  +S      +  ++  ++S LC +GR   A
Sbjct: 449 GCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAA 508

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + ++M   G  PD+  Y++L+   C+   L  A  L++ +  S    N     IL+  
Sbjct: 509 KELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGG 568

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDA 505
             + G++E A  LF ++  + + PD 
Sbjct: 569 MCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 22/401 (5%)

Query: 51  LVARVINPYLLTHHSLALGFFN---------WASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           +++R   P + TH  +  G            W  +       P  +SY  I+ SL  +R 
Sbjct: 200 IMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRL 259

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC- 157
           +N    +   ++   I+     Y  +I  +      ++A  +F E +++N   + P++  
Sbjct: 260 VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN---MKPDVVT 316

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            + L+  L  +G +  AL +F +M    +E   + +   I   C+++   +  ++L+E+ 
Sbjct: 317 FSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEML 376

Query: 217 KRENSMINGSVIAVLI-IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            R    I   V+   I +  FCK   V EA  +++ +  R  +P+ + Y  + + + L  
Sbjct: 377 SRN---IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHS 433

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E   V       G AP    Y   I G     RI EAK+L + +     T +     
Sbjct: 434 QMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHT 493

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   +  P +A   F  M   G  P L T S L    CK    DE + +++ L  +
Sbjct: 494 TLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKS 553

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
               +     +++  +C +G+L +A  +   +  + L PDV
Sbjct: 554 QLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 217/485 (44%), Gaps = 11/485 (2%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           ++ DS  Y  +I  L +      A ++F ++  +          SL+  L      D+A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++F +M+ RG   S + + V I   C+   L +   ++ ++   E+  +   V    ++ 
Sbjct: 66  ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI--EDGHVPDVVTYNTVMD 123

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK  RVEEA  + +E+    C P+  ++  +         + +   V  +     + P
Sbjct: 124 GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPP 183

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
            +  Y   I GL    ++ EA +L + ++    T      N +I G   +     A+  F
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M  KG  P+  T + L    CKR K DE   + K ++ + +  D+ +Y+ ++S LC+ 
Sbjct: 244 KSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 303

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            R+ +A  ++++M ++   P V   N+L+   C+   ++ A+++ D M +SG S ++ TY
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 363

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N L+      G+ E A  L  +M+ +G+AP+  TYT+L+ GLC+   L  A  VF +  +
Sbjct: 364 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 423

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI-------LLKSLADA 586
                     +  ++  C  G      KL  G     G S  HV+       L KS   A
Sbjct: 424 SGCAPNLFTYTALILGFCSAGQVDGGLKLF-GEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 587 REVEM 591
           R +E+
Sbjct: 483 RALEI 487



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/476 (22%), Positives = 198/476 (41%), Gaps = 46/476 (9%)

Query: 83  SPLSYHSILKSLSLSRQI--NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           SP++Y+ ++ + S  R +   A D + K ++   +  D   Y  ++  L +    ++A  
Sbjct: 79  SPVTYNVMIDA-SCKRGMLEEACDLIKKMIEDGHVP-DVVTYNTVMDGLCKSSRVEEALL 136

Query: 141 VFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           +FNE+ +  C        N+++  L     ID A ++F EM  + +   +  +G+ I   
Sbjct: 137 LFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGL 195

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  KL +   +    R  ++ +   +V   ++IHG C    ++EA ++   +R + C+P
Sbjct: 196 AKAGKLNEAYKLFQ--RMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
               + I+ +     G + E   +LK+    G  P    Y   I GL    R+ +A+ L 
Sbjct: 254 SRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E +V  +        N LI G   +   + A    + M+  G+ P + T + L    C+ 
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 373

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +++   E+   + A     ++ +Y  +VS LC + RL EA GV  +MK  G  P++  Y
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS----------------- 481
            +L+   C    +    KL+ +M  +G S +   Y  L ++                   
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 493

Query: 482 --------------------EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
                               E G++E AL    +M+  G  P      SL+ GLC+
Sbjct: 494 SLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCK 549



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E+   P   +   L   L K  K ++   +++ L  +       +Y  ++  LC +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +A  +  +M R+G  P    YN +++A C+  +L  A  L  +M   G   ++ TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           ++    +   +E AL LF+ M   G  P+  ++ +++ GLCQ++ +  A +VF++    D
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 536 V 536
           +
Sbjct: 181 I 181



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 141/379 (37%), Gaps = 40/379 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY  ++  L+ + ++N    + +++  + IT  +  Y  +I  +       +A  +F  +
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +           N L+      G +D A ++   M+  G     + +   I   C  A++
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +L+++ KR+       V    +IHG CK  R++EA +VLD +      PD + Y 
Sbjct: 307 DDARHLLEDMVKRQCKPT--VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +       G       +L      G+AP    Y   + GL    R+ EA  +   + S 
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS--- 381
               +     ALI G  S+      +  F  M+  G  P       L+  LCK  +S   
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 382 -------------------------DELVEVYKVLSANDYFTDM---------ESYNVMV 407
                                    D L+E  K+  A  +  DM         E    +V
Sbjct: 485 LEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLV 544

Query: 408 SFLCTSGRLREAYGVIQEM 426
           + LC SG+  EA  V++E+
Sbjct: 545 AGLCKSGQGGEARAVLEEI 563


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 218/505 (43%), Gaps = 34/505 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R  L+P LV  +++   L    L + FF WA +Q  + H+P  Y ++L           
Sbjct: 132 FRQKLNPDLVVEILS--FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRV 189

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICN 158
            +  L++++ +    D  V   ++  LI+       ++V  E     +D G +      N
Sbjct: 190 PEEFLREIRGD----DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYN 245

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EMS  G+       G F    C+  K  + LS++++    
Sbjct: 246 ALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---- 301

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               +  +++   +I G C+    EEA   L+ +R   C P+   YRI      L+    
Sbjct: 302 -EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRI------LLCGCL 354

Query: 279 EREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            ++ + + KR L      G  P    +   +           A +L + +   +      
Sbjct: 355 NKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYV 414

Query: 333 VLNALIGSVSSIDPRSAIVFF-------NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           V N LIGS+ S       V F       N M+  G V     + + ++ LC   K ++  
Sbjct: 415 VYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAY 474

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +V   +  N +  D  +Y+ ++ FLC + R+  A+ + +EMK  G+ PDV  Y  L++  
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +  +++ A    D+M   GC   + TY  LI  + +  ++  A  LF  M+ KG  P+ 
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TYT+L++G C+  N++ A +++ +
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYAR 619



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 117/530 (22%), Positives = 207/530 (39%), Gaps = 79/530 (14%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           V+ ++  N    D+S Y  +I  L      + AF +F E+K     + P++     L+  
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGT--GVVPDVYTYTILIDC 533

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
            +  G I  A    DEM   G E + + +   I  + +  K+  V + L E+   +    
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKV-SVANELFELMIAKGCFP 592

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
           N  +    +I G+CK   +E+A ++   +R     PD   Y      FK+  +V E+   
Sbjct: 593 N-VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMY------FKIKNNVAEK--- 642

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
                     P    Y   + GL    ++ +A++L E                       
Sbjct: 643 ----------PNVVTYGALVDGLCKAHKVKDARDLLET---------------------- 670

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                       M   G  P       L    CK  K DE  EV+  +  + Y  ++ +Y
Sbjct: 671 ------------MFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTY 718

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++  L    RL     V+ +M      P++  Y  +++   +      A KL   M  
Sbjct: 719 SSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEE 778

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            GC  N+ TY  +I  F + G+++  L LF  M  KG AP+  TYT L+   C   +L  
Sbjct: 779 KGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDE 838

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCR-----RGHFLVATKLLRGLSSDLGHSDSHVI 578
           A+ +  +       + ++     + S C+     +  F+++  LL  +  +   S   ++
Sbjct: 839 AYALLEE-------MKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKN--GSAPIIL 889

Query: 579 LLKSLAD----AREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSS 622
           L K L D    A  +E+A+E  K +  +S +M   + +   L  S S +S
Sbjct: 890 LYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYAS 939



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/494 (20%), Positives = 209/494 (42%), Gaps = 25/494 (5%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F     +Y  ++  L  + ++     + K++K   +  D   Y  +I    +    ++A
Sbjct: 484 GFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 139 FSVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            +  +E V+  CE   P +    +L+        +  A ++F+ M  +G   + I +   
Sbjct: 544 HNWLDEMVRDGCE---PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600

Query: 196 IWKFCENAKLGQVLSMLDEVR------------KRENSMINGSVIAVL--IIHGFCKGKR 241
           I  +C++  + +   +   +R            K +N++     +     ++ G CK  +
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHK 660

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V++A  +L+ + +  C+P+ I Y  + + F     + E + V  K  + G  P    Y  
Sbjct: 661 VKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSS 720

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKG 360
            I  L  ++R+    ++   ++      +  +   +I  +S +     A      M EKG
Sbjct: 721 LIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKG 780

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + +     K  K D+ +E+++ + +     +  +Y V+++  C +G L EAY
Sbjct: 781 CKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAY 840

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++EMK+      VS Y  ++E   RE +L  +  L +++  +G +  +  Y +LI  F
Sbjct: 841 ALLEEMKQTYWPKHVSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAPIILLYKVLIDNF 898

Query: 481 SEVGEIEGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + G +E AL L   ++   +  A     YTSL+      + +  AFE+F   +   V+ 
Sbjct: 899 VKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIP 958

Query: 539 ARSILSTFMISLCR 552
                   ++ L R
Sbjct: 959 DLGTFVHLLMGLIR 972



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 3/195 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  PT  T + L +   + +K D    V++ +S      D  +       LC  G+ REA
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +I+   ++   P+   YN ++   C       A    ++M ++ C  N++TY IL+  
Sbjct: 296 LSLIE---KEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG 352

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                ++    R+   M+ +G  P  T + SL+   C+  +   A+++  K    +    
Sbjct: 353 CLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPG 412

Query: 540 RSILSTFMISLCRRG 554
             + +  + S+C  G
Sbjct: 413 YVVYNILIGSICSGG 427



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 3/165 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V     + +L  A  V +EM   GL  D        +A C+    R A  L ++ 
Sbjct: 243 TYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK- 301

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                  N   YN +IS   E    E A+   + M      P+  TY  LL G   +  L
Sbjct: 302 --EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQL 359

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
                + +  +      + +I ++ + + C+   F  A KLL+ +
Sbjct: 360 GRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM 404


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 218/505 (43%), Gaps = 34/505 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R  L+P LV  +++   L    L + FF WA +Q  + H+P  Y ++L           
Sbjct: 132 FRQKLNPDLVVEILS--FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRV 189

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICN 158
            +  L++++ +    D  V   ++  LI+       ++V  E     +D G +      N
Sbjct: 190 PEEFLREIRGD----DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYN 245

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V      +D A  +  EMS  G+       G F    C+  K  + LS++++    
Sbjct: 246 ALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---- 301

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               +  +++   +I G C+    EEA   L+ +R   C P+   YRI      L+    
Sbjct: 302 -EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRI------LLCGCL 354

Query: 279 EREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            ++ + + KR L      G  P    +   +           A +L + +   +      
Sbjct: 355 NKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYV 414

Query: 333 VLNALIGSVSSIDPRSAIVFF-------NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           V N LIGS+ S       V F       N M+  G V     + + ++ LC   K ++  
Sbjct: 415 VYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAY 474

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +V   +  N +  D  +Y+ ++ FLC + R+  A+ + +EMK  G+ PDV  Y  L++  
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +  +++ A    D+M   GC   + TY  LI  + +  ++  A  LF  M+ KG  P+ 
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TYT+L++G C+  N++ A +++ +
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYAR 619



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/550 (20%), Positives = 223/550 (40%), Gaps = 33/550 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L      +Q+     +L  +         +++  ++ +  +  +   A+ +  ++
Sbjct: 345 TYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM 404

Query: 146 KFNCE-DIGPEICNSLLAVLASDGYIDN------ALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +  CE   G  + N L+  + S G +        A K ++EM   G   + +    F   
Sbjct: 405 E-KCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+    N  +  +     +I   C   RVE AF +  E++     
Sbjct: 464 LCGFGKFEKAYKVIHEMMG--NGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVV 521

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + +    L +  + G  P    Y   I   +  +++  A EL
Sbjct: 522 PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANEL 581

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E++++     +     ALI G   S +   A   +  M     +P +     +  N+ +
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641

Query: 378 RNKS-------DELVEVYKVLSANDYFTDMES---------YNVMVSFLCTSGRLREAYG 421
           +          D L + +KV  A D    M           Y+ ++   C + +L EA  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M  +G +P+V  Y+SL++   ++  L    K+  +M  + C+ N+  Y  +I   S
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +V + + A +L   M EKG  P+  TYT++++G  +   +    E+F +  +        
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDL--GHSDSHVILLKSLADAREVEMAIEHIKWI 599
             +  +   C  GH   A  LL  +       H  S+  +++     RE  +++  ++ +
Sbjct: 822 TYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY--KREFILSLGLLEEV 879

Query: 600 QE--SSPTML 607
           ++  S+PT+L
Sbjct: 880 EKNGSAPTIL 889



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/493 (20%), Positives = 210/493 (42%), Gaps = 25/493 (5%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     +Y  ++  L  + ++     + K++K   +  D   Y  +I    +    ++A 
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 140 SVFNE-VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +  +E V+  CE   P +    +L+        +  A ++F+ M  +G   + I +   I
Sbjct: 545 NWLDEMVRDGCE---PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALI 601

Query: 197 WKFCENAKLGQVLSMLDEVR------------KRENSMINGSVIAVL--IIHGFCKGKRV 242
             +C++  + +   +   +R            K +N++     +     ++ G CK  +V
Sbjct: 602 DGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKV 661

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           ++A  +L+ + +  C+P+ I Y  + + F     + E + V  K  + G  P    Y   
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSL 721

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGR 361
           I  L  ++R+    ++   ++      +  +   +I  +S +     A      M EKG 
Sbjct: 722 IDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC 781

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + +     K  K D+ +E+++ + +     +  +Y V+++  C +G L EAY 
Sbjct: 782 KPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYA 841

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++EMK+      VS Y  ++E   RE +L  +  L +++  +G +  +  Y +LI  F 
Sbjct: 842 LLEEMKQTYWPKHVSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAPTILLYKVLIDNFV 899

Query: 482 EVGEIEGALRLFHNMLEKGVAPDA--TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           + G +E AL L   ++   ++  A    YTSL+      + +  AFE+F   +   V+  
Sbjct: 900 KAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPD 959

Query: 540 RSILSTFMISLCR 552
                  ++ L R
Sbjct: 960 LGTFVHLLMGLIR 972



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 3/195 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  PT  T + L +   + +K D    V++ +S      D  +       LC  G+ REA
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +I+   ++   P+   YN ++   C       A    ++M ++ C  N++TY IL+  
Sbjct: 296 LSLIE---KEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG 352

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                ++    R+   M+ +G  P  T + SL+   C+  +   A+++  K    +    
Sbjct: 353 CLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPG 412

Query: 540 RSILSTFMISLCRRG 554
             + +  + S+C  G
Sbjct: 413 YVVYNILIGSICSGG 427



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 3/165 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V     + +L  A  V +EM   GL  D        +A C+    R A  L ++ 
Sbjct: 243 TYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK- 301

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                  N   YN +IS   E    E A+   + M      P+  TY  LL G   +  L
Sbjct: 302 --EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQL 359

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
                + +  +      + +I ++ + + C+   F  A KLL+ +
Sbjct: 360 GRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM 404


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 194/427 (45%), Gaps = 38/427 (8%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L A++    Y D  + +  +M   G+  +     + I  F    ++    S+L ++ K  
Sbjct: 104 LSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKL- 162

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    V    +I+  CK  +  +A ++ D++  R C+PD   Y  +      +G    
Sbjct: 163 -GLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAA 221

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +LKK  + G  P    Y   I     +RR+ EA ++                     
Sbjct: 222 AAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI--------------------- 260

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                        F++M  KG  P + T ++L + LC  ++  E   +   + + +   D
Sbjct: 261 -------------FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + ++NV+V  +C  G++ EA GV++ M   G++PDV  Y+SLM        +  A+KL+D
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD 367

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   GC  ++ +YNILI+ + +V  I+ A +LF+ M+ +G+ P+  +Y +L+ GLCQ  
Sbjct: 368 AMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579
           +L+ A  +F     +  +      S  +   C++G+F  A +L R + S   +S  ++++
Sbjct: 428 SLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQST--YSKPNLVM 485

Query: 580 LKSLADA 586
              L DA
Sbjct: 486 YNILIDA 492



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/515 (22%), Positives = 214/515 (41%), Gaps = 53/515 (10%)

Query: 64  HSLALGFFNWASQQPNFTH----SPL----SYHSILKSL-SLSRQINAIDSVLKQVKVNK 114
           H  A  F N      +F H     PL     +  +L ++  + +  + + S+ KQ+++  
Sbjct: 69  HDDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAG 128

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICN--SLLAVLASDGYID 171
           ++ +      +I      +    AFSV  ++ K   +   P I    +L+  L   G   
Sbjct: 129 LSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQ---PTIVTFTTLINWLCKVGKFA 185

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFC---ENAKLGQVLSMLDEVRKRENSMINGSVI 228
            A+++FD+M  RG       +   I   C   E A    +L  ++E   + N +   ++I
Sbjct: 186 QAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245

Query: 229 AVL------------------------------IIHGFCKGKRVEEAFKVLDELRIRECK 258
                                            +I G C   + +EA  +L+E+R     
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + + ++ +     G V E + VLK   ++GV P    Y   + G  +   + EA++L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 319 GEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            + +++     D    N LI     V  ID   A   FN MI +G  P   + + L   L
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRID--EAKQLFNEMIHQGLTPNNVSYNTLIHGL 423

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+     E   ++K +  N    ++ +Y++++   C  G   +A+ + + M+     P++
Sbjct: 424 CQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNL 483

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN L++A C+   LR A+KL+ ++F  G   N + Y  +I+   + G ++ AL  F N
Sbjct: 484 VMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRN 543

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           M E G  PD  +Y  ++ G     +   A ++  +
Sbjct: 544 MEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGE 578



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 188/435 (43%), Gaps = 5/435 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +  ++   G++ + + F   I   C+  K  Q + + D++  R           
Sbjct: 149 VDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR--GCRPDVYTY 206

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             II+G CK      A  +L ++    C+P+ + Y  + +  +    V E   +    + 
Sbjct: 207 TTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKV 266

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS- 348
            G++P    Y   I GL    +  EA  L   + S     D    N L+ ++      S 
Sbjct: 267 KGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSE 326

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A      M E G  P + T S+L      R++  E  +++  +       D+ SYN++++
Sbjct: 327 AQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILIN 386

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   R+ EA  +  EM  +GL P+   YN+L+   C+   LR A+ L+  M  +G   
Sbjct: 387 GYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLP 446

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           NL TY+IL+  F + G    A RLF  M      P+   Y  L++ +C+  NL+ A ++F
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
           ++     +     I +T +  LC+ G    A +  R +  D    D  S+ ++++     
Sbjct: 507 SELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHH 566

Query: 587 REVEMAIEHIKWIQE 601
           ++   A++ I  +++
Sbjct: 567 KDESRAVQLIGEMRD 581



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 151/342 (44%), Gaps = 3/342 (0%)

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           D  ++ AL +F  M  +G+      +   I   C  ++  +  ++L+E+R    +++   
Sbjct: 251 DRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL--NIMPDI 308

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   +++   CK  +V EA  VL  +     +PD + Y  +   + L   V E   +   
Sbjct: 309 VTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDA 368

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
               G  P    Y   I G    +RI EAK+L   ++    T ++   N LI  +  +  
Sbjct: 369 MITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGS 428

Query: 347 -RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            R A   F  M   G +P L T S L    CK+    +   +++ + +     ++  YN+
Sbjct: 429 LREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNI 488

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++  +C SG LR+A  +  E+  KGL P+   Y +++   C+E LL  A + +  M   G
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDG 548

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           C  +  +YN++I  F    +   A++L   M +KG   D  T
Sbjct: 549 CPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 212/474 (44%), Gaps = 7/474 (1%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           L R  +A+D V  Q+    +  D++VY  ++  L +G   +   SV+NE+      I P+
Sbjct: 137 LRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTD--RGIQPD 194

Query: 156 IC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           +   N+L+  L     +  A+ M +EMS   V      F   +  F E   +   L +  
Sbjct: 195 VVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRV-- 252

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           + +  E       V   ++I+G+CK  RVE+A   + +      +PD + Y         
Sbjct: 253 KTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQ 312

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G V     V+    + G  P    Y   I  L     + EAK +   +V      D   
Sbjct: 313 NGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTT 372

Query: 334 LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI ++ S +    A+     +  KG  P + T + L   LCK       + +++ + 
Sbjct: 373 FNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 432

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           ++    D  +YN+++  LC+ G+L  A  +++EM+  G       YN++++A C++  + 
Sbjct: 433 SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIE 492

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++++DQM A G S +  T+N LI    +   I+ A  L   M+++G+ P   TY S+L
Sbjct: 493 EAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSIL 552

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
              C++ +L+ A ++      +   +      T +  LC+ G   VA KLLRG+
Sbjct: 553 THYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM 606



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/540 (21%), Positives = 242/540 (44%), Gaps = 10/540 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL   N A  + +F  S   Y  I++ L  +   + ++ ++++++       + V R  +
Sbjct: 72  ALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFV 131

Query: 127 PSLIQGKNTQKAFS-VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
            S  + +    A   V N++          + N LL VLA    +     +++EM+ RG+
Sbjct: 132 ESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGI 191

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           +   +     I   C   ++   + ML+E+    +++         ++ GF +   +E A
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSS--HAVAPDETTFTTLMQGFIEEGSIEAA 249

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            +V  ++    C P  +   ++   +  MG V +    ++K+   G  P    Y  F+  
Sbjct: 250 LRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHC 309

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS---SIDPRSAIVFFNFMIEKGRV 362
           L     +  A ++ ++++      D    N +I  +S    +D    IV  N M+++G +
Sbjct: 310 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV--NQMVDRGCL 367

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P  +T + L   LC +N+ +E +++ + L+      D+ ++N++++ LC  G       +
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 427

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EMK  G  PD   YN L++  C    L  A  L  +M ++GC  +  TYN +I    +
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCK 487

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              IE A  +F  M   G++  A T+ +L++GLC+   +  A E+  + V   +  +   
Sbjct: 488 QMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNIT 547

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
            ++ +   C++G    A  +L  ++++    D  ++  L+  L  A   ++A++ ++ ++
Sbjct: 548 YNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 189/424 (44%), Gaps = 9/424 (2%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           + R  +A+  + K++  +    D   Y   +  L Q  +   A  V + +     D    
Sbjct: 278 MGRVEDALGYIQKEI-ADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVF 336

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N+++  L+ +G +D A  + ++M  RG    T  F   I   C   +L + L +  E+
Sbjct: 337 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLAREL 396

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             +   +        ++I+  CK        ++ +E++   C PD + Y I+ +    MG
Sbjct: 397 TVK--GLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMG 454

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     +LK+    G    T  Y   I  L  + RI EA+E+ + + +   +      N
Sbjct: 455 KLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFN 514

Query: 336 ALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            LI  +     ID  + ++    M+++G  P+  T +++  + CK+    +  ++ + ++
Sbjct: 515 TLIDGLCKAKRIDDATELI--EQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMT 572

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           AN +  D+ +Y  +++ LC +GR + A  +++ M+ KG+ P    YN ++++  R + LR
Sbjct: 573 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLR 632

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSL 511
            A  L+ +M   G   +  TY I+       G  I+ A      M+ KG  P+ +++  L
Sbjct: 633 DALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 692

Query: 512 LEGL 515
            EGL
Sbjct: 693 AEGL 696



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 165/388 (42%), Gaps = 13/388 (3%)

Query: 63  HHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           H S AL   +   Q+    H P   +Y++++  LS + +++    ++ Q+       D++
Sbjct: 315 HVSHALKVMDLMLQE---GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 371

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            +  +I +L      ++A  +  E+    + + P++   N L+  L   G     +++F+
Sbjct: 372 TFNTLIVALCSQNRLEEALDLARELTV--KGLSPDVYTFNILINALCKVGDPHLGIRLFE 429

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM   G     + + + I   C   KL   L +L E+    N     +V    II   CK
Sbjct: 430 EMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMES--NGCPRSTVTYNTIIDALCK 487

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             R+EEA +V D++         + +  + +       + +   ++++  K G+ P    
Sbjct: 488 QMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNIT 547

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   +     +  + +A ++ E + +  F ID      LI G   +   + A+     M 
Sbjct: 548 YNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC-TSGRL 416
            KG  PT    + + ++L +RN   + + +++ ++      D  +Y ++   LC   G +
Sbjct: 608 IKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPI 667

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +EA+  + EM  KG  P+ S +  L E 
Sbjct: 668 KEAFDFLVEMVNKGFMPEFSSFRMLAEG 695



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
            + S +++++++  L  +++I+    +++Q+    +   +  Y  I+    +  + +KA 
Sbjct: 506 ISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAA 565

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +   +  N  +I      +L+  L   G    ALK+   M  +G+  +   +   I   
Sbjct: 566 DILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECK 258
                L   LS+  E+   E      ++   ++  G C+ G  ++EAF  L E+  +   
Sbjct: 626 FRRNNLRDALSLFREM--TEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFM 683

Query: 259 PDFIAYRIVAEEFKLMG 275
           P+F ++R++AE    +G
Sbjct: 684 PEFSSFRMLAEGLLNLG 700


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 217/498 (43%), Gaps = 13/498 (2%)

Query: 82  HSPLS---YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           H P S   +  +L S++  +  + + S+  Q+    +  +      +I S         A
Sbjct: 60  HPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFA 119

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           FSV  ++        P    +L+  L  +G I  AL +FD+M   G + + + +G  I  
Sbjct: 120 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 179

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            C   K+G   + +  +R  E       V I   II   CK ++V EAF +  ++  +  
Sbjct: 180 LC---KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 236

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD   Y  +      +        +L +     + P    +   +  L  E ++ EA E
Sbjct: 237 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 296

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + ++++      D      L+ G     +   A+  F+ M+ KG  P + + + L    C
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 356

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K +K D+ + +++ +   ++  D ++YN ++  LC  GRL++A  +  EM  +G  PD+ 
Sbjct: 357 KIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLV 416

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ L+++ C+   L  A  L   + AS  + +++ YNI+I      GE+E A  LF N+
Sbjct: 417 TYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 476

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
             KG+ P   TY  ++ GLC+   L  A ++F +   +D        +T      +    
Sbjct: 477 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 536

Query: 557 LVATKLL-----RGLSSD 569
           L A +LL     RG S+D
Sbjct: 537 LRAIQLLEEMLARGFSAD 554



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 2/238 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN ++     P++   + L  ++ K      ++ +   + +     ++ + N++++
Sbjct: 49  ALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILIN 108

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   R+  A+ V+ ++ + G  PD + + +L+   C E  +  A  L+D+M   G   
Sbjct: 109 SFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQP 168

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI+   +VG    A+RL  +M +    PD   YTS+++ LC++  +  AF +F
Sbjct: 169 NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLF 228

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           ++ V   +       ++ + +LC    +   T LL  + +     D  V++  ++ DA
Sbjct: 229 SQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD--VVIFSTVVDA 284


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 202/444 (45%), Gaps = 16/444 (3%)

Query: 149 CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           C    P+I  C SL+  L   G    A ++ + +   G     I + V I  +C+  ++G
Sbjct: 138 CRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIG 197

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             L +LD +    + +   +++  L     C   +++EA +VLD    REC PD I Y I
Sbjct: 198 SALQLLDRMSVSPDVVTYNTILRTL-----CDSGKLKEAMEVLDRQMQRECYPDVITYTI 252

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + E       V +   +L + R  G  P    Y   I G+  E R+ EA      + S  
Sbjct: 253 LIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYG 312

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              +    N ++ S+ S      A  F   MI KG  P++ T + L   LC++      +
Sbjct: 313 CQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAI 372

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +V + +  +    +  SYN ++  LC   ++  A   +  M  +G  PD+  YN+L+ A 
Sbjct: 373 DVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTAL 432

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C++  +  A ++ +Q+ + GCS  L TYN +I   S+VG+ + A++L   M  KG+ PD 
Sbjct: 433 CKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDI 492

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-----RGHFLVAT 560
            TY++L+ GL +E  +  A   F+      V       ++ M+ LC+     R    +A 
Sbjct: 493 ITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAY 552

Query: 561 KLLRGLSSDLGHSDSHVILLKSLA 584
            + RG         S++IL++ LA
Sbjct: 553 MVARGCKPT---ETSYMILIEGLA 573



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 197/457 (43%), Gaps = 16/457 (3%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSS------VYRFIIPSLIQGKNTQKAFSVFN 143
           I+   SL R +       K  +V +I  DS        Y  +I    +      A  + +
Sbjct: 145 IIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLD 204

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +      + P++   N++L  L   G +  A+++ D    R      I + + I   C+
Sbjct: 205 RMS-----VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            + +GQ + +LDE+R +        V   ++I+G CK  R++EA + L+ +    C+P+ 
Sbjct: 260 ESGVGQAMKLLDEMRDK--GCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNV 317

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I + I+       G   + E  L +  + G +P    +   I  L  +  I  A ++ E 
Sbjct: 318 ITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEK 377

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     T +    N L+ ++        AI + + M+ +G  P + T + L   LCK  K
Sbjct: 378 MPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 437

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D  VE+   L +      + +YN ++  L   G+  +A  ++ EMK KGL PD+  Y++
Sbjct: 438 VDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYST 497

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+    RE  +  A   +  +   G   N  TYN ++    +  +   A+     M+ +G
Sbjct: 498 LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARG 557

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             P  T+Y  L+EGL  E   + A E+ N+  +  V+
Sbjct: 558 CKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVV 594



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 16/214 (7%)

Query: 380 KSDELVEVYKVLS---ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           ++ EL E +K L          D+ +   ++  LC +G+  +A  V++ ++  G  PDV 
Sbjct: 122 RNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVI 181

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN L+   C+   +  A +L D+M     S ++ TYN ++    + G+++ A+ +    
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMSV---SPDVVTYNTILRTLCDSGKLKEAMEVLDRQ 238

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCR 552
           +++   PD  TYT L+E  C+E+ +  A     E+ +K    DV+    +++     +C+
Sbjct: 239 MQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN----GICK 294

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
            G    A + L  + S     +  +H I+L+S+ 
Sbjct: 295 EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMC 328



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           +R   SPS+V   I    L    L     +   + P    +P  LSY+ +L +L   +++
Sbjct: 344 IRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKM 403

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--- 157
                 L  +       D   Y  ++ +L +      A  + N+       +G + C   
Sbjct: 404 ERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ-------LGSKGCSPV 456

Query: 158 ----NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-- 211
               N+++  L+  G  D+A+K+ DEM  +G++   I +   +       K+ + ++   
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFH 516

Query: 212 -LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
            L+E+  + N++   S++      G CK ++   A   L  +  R CKP   +Y I+ E 
Sbjct: 517 DLEEMGVKPNAITYNSIML-----GLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEG 571

Query: 271 FKLMG 275
               G
Sbjct: 572 LAYEG 576



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+ +    R   L    K  + M   G   ++     LI    + G+   A R+   + +
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVNHDVMLARSILSTFMISLCRRGHFL 557
            G  PD  TY  L+ G C+   + +A ++ ++ SV+ DV+   +IL T    LC  G   
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRT----LCDSGKLK 229

Query: 558 VATKLL 563
            A ++L
Sbjct: 230 EAMEVL 235


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 3/408 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G ++ A ++   M   G + ++  F + I  +C    +G+ L +LDE+ K
Sbjct: 84  NVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 143

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  +++  +V    +I+G C  K +  A K+L+++     KP+ + Y  +   +   G +
Sbjct: 144 R--NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 201

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L      GVAP    Y   I  L    ++ EA      I       D     A 
Sbjct: 202 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 261

Query: 338 IGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S     + A  +F+ M++ G +P     + L     K     E + +++ L A   
Sbjct: 262 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 321

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+++ +  +  L  +GR++EA  V  E+K KGL PDV  Y+SL+   C++  +  A +
Sbjct: 322 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 381

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G + N+  YN L+    + G+I+ A +LF  M EKG+ PD+ TY+++++G C
Sbjct: 382 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 441

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +  N+  AF +F++  +  V     + +  +   C+ G    A  L R
Sbjct: 442 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 489



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 209/472 (44%), Gaps = 19/472 (4%)

Query: 103 IDSVL--KQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICN 158
           ID VL  K V V+  I ++   Y  +I  L +    +KA  +    +   C+       N
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKP------N 114

Query: 159 SLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           S    L  +GY     +  AL++ DEM  R +  S + +G  I   C    L     +L+
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           ++    + +    V+   +I G+    R+EEA ++LD +      PD   Y  +      
Sbjct: 175 KMTF--SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 232

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E    L + +  G+ P    +  FILG     ++ EA +  + ++      ++ +
Sbjct: 233 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 292

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              LI G   + +   A+  F  +   G +P + T S     L K  +  E ++V+  L 
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+ ++S  C  G + +A+ +  EM  KG+ P++  YN+L++  C+   ++
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 412

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+KL+D M   G   +  TY+ +I  + +   +  A  LFH M  KGV P +  Y +L+
Sbjct: 413 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            G C+E +++ A  +F + +        S  +T +   C+      A++L +
Sbjct: 473 HGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQ 523



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/508 (22%), Positives = 224/508 (44%), Gaps = 25/508 (4%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N   S +SY +++  L   + ++  + +L+++  + +  +  VY  +I         
Sbjct: 142 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 201

Query: 136 QKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A  + + +  +C  + P+I C N++++ L+  G ++ A     E+  RG++   + FG
Sbjct: 202 EEARRLLDGM--SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 259

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            FI  + +  K+ +     DE+   ++ ++  + +  ++I+G  K   + EA  +   L 
Sbjct: 260 AFILGYSKTGKMTEAAKYFDEML--DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLH 317

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                PD              G V E   V  + ++ G+ P    Y   I G   +  + 
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A EL + +       +  + NAL+ G   S D + A   F+ M EKG  P   T S + 
Sbjct: 378 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 437

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              CK     E   ++  + +         YN +V   C  G + +A  + +EM +KG  
Sbjct: 438 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA 497

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA--- 489
             +SF N+L++  C+   ++ A +L+ +M A     +  TY  +I    + G++E A   
Sbjct: 498 TTLSF-NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 556

Query: 490 --------------LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
                           LF  M+ KGV PD  TY  ++   C+E NL  AF++ ++ V   
Sbjct: 557 FKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 616

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
           ++   +I    + +LC+R     A+KLL
Sbjct: 617 MLTKGTIHDLLITALCKREDLTEASKLL 644



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 187/458 (40%), Gaps = 54/458 (11%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           ++  Y  I   L + K   +A   F E++          C++L+     +G ID  L++ 
Sbjct: 9   NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 68

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           D M   G+  + I + V I   C+  K+    ++L  +  +  + NS         L+I 
Sbjct: 69  DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT-----FCLLIE 123

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+C+   +  A ++LDE+  R   P  ++Y  +         +     +L+K    G+ P
Sbjct: 124 GYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 183

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y   I+G   E RI EA+ L               L+ +  S S + P   I  +N
Sbjct: 184 NVVVYSTLIMGYASEGRIEEARRL---------------LDGM--SCSGVAPD--IFCYN 224

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            +I           S LSK       S  L+E+           D  ++   +     +G
Sbjct: 225 AII-----------SCLSKAGKMEEASTYLLEI----QGRGLKPDAVTFGAFILGYSKTG 269

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA     EM   GL P+   Y  L+    +   L  A  ++  + A G   +++T +
Sbjct: 270 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 329

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
             I    + G ++ AL++F  + EKG+ PD  TY+SL+ G C++  ++ AFE+      H
Sbjct: 330 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL------H 383

Query: 535 DVMLARSILSTFMI------SLCRRGHFLVATKLLRGL 566
           D M  + I     I       LC+ G    A KL  G+
Sbjct: 384 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 421



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+   Y I+         + E ++  ++ +K G+ P  N     I G + E  I E   +
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            +V+VS    I+    N LI  +        A      MI  G  P   T   L +  C+
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +     +E+   +   +      SY  M++ LC    L  A  ++++M   GL P+V  
Sbjct: 128 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 187

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y++L+     E  +  A++L D M  SG + ++  YN +IS  S+ G++E A      + 
Sbjct: 188 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 247

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            +G+ PDA T+ + + G  +   +  A + F++ ++H +M    + +  +    + G+ +
Sbjct: 248 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 307

Query: 558 VATKLLRGLSS 568
            A  + R L +
Sbjct: 308 EALSIFRHLHA 318



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 2/247 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M EKG VP   T + ++  LC+  + +E    ++ +       D  + + ++      G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + E   +   M   G+  ++  YN L+   C+   +  A ++   M   GC  N +T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI  +     +  AL L   M ++ + P A +Y +++ GLC   +L  A ++  K     
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
           +     + ST ++     G    A +LL G+S      D   +  ++  L+ A ++E A 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 594 EHIKWIQ 600
            ++  IQ
Sbjct: 241 TYLLEIQ 247


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 219/504 (43%), Gaps = 29/504 (5%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++       ++  ++ +L+  +   + LD   Y  ++    +     KAF   + + 
Sbjct: 308 YNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMV 367

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N         N+LL    S G ID+ALK++  M  RGV  + I     +  F +  K  
Sbjct: 368 RNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTE 427

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           Q L++  E   R   +    V    +I+G CK +R+ EA ++   ++   C  D + YR 
Sbjct: 428 QALNLWKETLAR--GLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRT 485

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + +  +G +     +  +   LG  P    +  FI GL + ++  +  ++   + +  
Sbjct: 486 LIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKG 545

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            + +     ALI G     +   A + +  M+EKG  P L   S L     +  K DE  
Sbjct: 546 LSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEAN 605

Query: 386 EVYKVLSANDYFTDMES--------------------------YNVMVSFLCTSGRLREA 419
            V + L+  D   D  +                          +N+++  LC  GR+ +A
Sbjct: 606 LVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADA 665

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + +++K KG  PD   Y+SL+  C     +  A  L D+M ++  + N+ TYN LI  
Sbjct: 666 RNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYG 725

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             +   +  A+ LF+ +  KG++P+A TY +L++G C++ N   AF++  K +   +   
Sbjct: 726 LCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPT 785

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +  +  LC +G+   A KLL
Sbjct: 786 VFTYTILIHGLCTQGYMEEAIKLL 809



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 179/412 (43%), Gaps = 18/412 (4%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL   A  G + +AL +FDEM   G   +       + +  +   +G  +++  ++R   
Sbjct: 100 LLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRC-A 158

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
            ++ +   +A++    +C+  RV  A   L E+       + +AY  V + +  +G    
Sbjct: 159 GTLPDDFTVAIMA-KAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEV 217

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALI 338
              +L   +  G++P    Y   + G   E R+ EA K + E+  + K  ID+    ALI
Sbjct: 218 ARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALI 277

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G         A    + MI+ G    +   + +    CK  +   + EV K+L AN+Y 
Sbjct: 278 NGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGR---MGEVEKLLQANEYR 334

Query: 398 T---DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  SYN +V   C  G + +A+     M R G       YN+L+   C    +  A
Sbjct: 335 GVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDA 394

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            KLW  M   G   N  + + L+  F + G+ E AL L+   L +G+A +  T  +++ G
Sbjct: 395 LKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVING 454

Query: 515 LCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           LC+   +  A E+F++    S   D +  R+++  +    C+ G    AT++
Sbjct: 455 LCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGY----CKLGDLGRATQI 502



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 182/389 (46%), Gaps = 16/389 (4%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  + A K+   +  +G+  + + + + +  +C+  ++ +   ++ E+++ E  +I+   
Sbjct: 213 GQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVA 272

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              LI +G+C+  R+E+A +V DE+     + +   Y  +   +  +G + E E +L+  
Sbjct: 273 YGALI-NGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQAN 331

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---I 344
              GV      Y   + G   +  + +A E  +++V   FT      N L+    S   I
Sbjct: 332 EYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAI 391

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A+  +  M+++G VP   + S L     K  K+++ + ++K   A     ++ + N
Sbjct: 392 D--DALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTIN 449

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++ LC + R+ EA  +   MK      D   Y +L++  C+   L  A ++  +M   
Sbjct: 450 TVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENL 509

Query: 465 GCSGNLKTYNILISKF---SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
           G   +++ +N  I+      + G++   +R+   M  KG++P+  TY +L+ G C+E NL
Sbjct: 510 GFVPSVEMFNSFITGLFIAKQSGKVND-IRV--EMSAKGLSPNTVTYGALIAGWCKEGNL 566

Query: 522 QAA----FEVFNKSVNHDVMLARSILSTF 546
             A    FE+  K +  ++ +   ++S F
Sbjct: 567 HDACILYFEMVEKGLKPNLFICSVLVSCF 595



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 187/433 (43%), Gaps = 38/433 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++ ++++  L  +R++   + +  ++K      DS  YR +I    +  +  +A     +
Sbjct: 446 VTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRA----TQ 501

Query: 145 VKFNCEDIG----PEICNSLLAVL--ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           ++   E++G     E+ NS +  L  A      N +++  EMS +G+  +T+ +G  I  
Sbjct: 502 IRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRV--EMSAKGLSPNTVTYGALIAG 559

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR----I 254
           +C+   L     +  E+   E  +     I  +++  F +  +V+EA  VL +L     I
Sbjct: 560 WCKEGNLHDACILYFEMV--EKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMI 617

Query: 255 RECKPDFIAYRIVAEEFK-LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           ++C    +    VA   + L G   +   ++              +   ILGL    R+ 
Sbjct: 618 QDCSASTLNIGKVAHIIESLAGGNHQSAKIM--------------WNIVILGLCKLGRVA 663

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVS---SIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           +A+ L E +    F  D+   ++LI   S   SID   A    + M+     P + T ++
Sbjct: 664 DARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDL--AFGLRDEMLSARLTPNIVTYNS 721

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LCK       V ++  L +     +  +YN ++   C  G   EA+ + Q+M ++G
Sbjct: 722 LIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEG 781

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + P V  Y  L+   C +  +  A KL DQM  +    N  TY  LI  ++  G ++   
Sbjct: 782 IQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAIT 841

Query: 491 RLFHNMLEKGVAP 503
           +L++ M   G+ P
Sbjct: 842 KLYNEMHICGLLP 854



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 194/442 (43%), Gaps = 45/442 (10%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEICNSLLA 162
           +++ + +  N +T+++     +I  L + +   +A  +F+ +K ++C       C+SL  
Sbjct: 435 ETLARGLARNVVTINT-----VINGLCKNRRMTEAEELFHRMKEWSCP------CDSLTY 483

Query: 163 VLASDGY-----IDNALKMFDEMSHRG----VE-FSTIGFGVFIWKFCENAKLGQVLSML 212
               DGY     +  A ++  EM + G    VE F++   G+FI K  ++ K+  +   +
Sbjct: 484 RTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAK--QSGKVNDIRVEM 541

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                  N++  G++IA     G+CK   + +A  +  E+  +  KP+     ++   F 
Sbjct: 542 SAKGLSPNTVTYGALIA-----GWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFY 596

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E  +VL+K   L       D     L       I +   + E +  G       
Sbjct: 597 REGKVDEANLVLQK---LADTDMIQDCSASTL------NIGKVAHIIESLAGGNHQSAKI 647

Query: 333 VLNALIGSVSSI----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           + N +I  +  +    D R+    F  +  KG +P   T S+L          D    + 
Sbjct: 648 MWNIVILGLCKLGRVADARN---LFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLR 704

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     ++ +YN ++  LC S  +  A  +  +++ KG+ P+   YN+L++  C++
Sbjct: 705 DEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKD 764

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                A KL  +M   G    + TY ILI      G +E A++L   M+E  V P+  TY
Sbjct: 765 GNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITY 824

Query: 509 TSLLEGLCQETNLQAAFEVFNK 530
            +L++G  +  N++A  +++N+
Sbjct: 825 WTLIQGYARCGNMKAITKLYNE 846


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 192/440 (43%), Gaps = 47/440 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++A     G +DNA ++   M    +E  T  +   I   C   +    L++LD++ +
Sbjct: 124 NAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLR 180

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    +   V   +++   CK    ++A K+LDE+R + C PD + Y +V       G V
Sbjct: 181 R--GCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRV 238

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +    LK     G  P T  Y   + GL    R  +A++L                   
Sbjct: 239 DDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKL------------------- 279

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M  KGR P + T + L   LC+R   +  +E+   +      
Sbjct: 280 ---------------MAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCT 324

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            +  SYN ++   C   ++  A   ++ M   G  PD+  YN+L+ A CR   +  A +L
Sbjct: 325 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVEL 384

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             Q+   GC+  L +YN +I   ++ G+ E AL L + M+ KG+ PD  TY+++  GLC+
Sbjct: 385 LHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDS 575
           E  ++ A + F K  +  +     + +  ++ LC+R     A  L   + S+  + +  +
Sbjct: 445 EGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNEST 504

Query: 576 HVILLKSLA------DAREV 589
           + IL++ LA      +ARE+
Sbjct: 505 YTILIEGLAYEGLVKEAREM 524



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 174/382 (45%), Gaps = 5/382 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L   G  DNAL + D+M  RG     + + + +   C+ +   Q + +LDE+R 
Sbjct: 156 NTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR- 214

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +       V   ++++G C+  RV++A + L  L    C+P+ ++Y IV +        
Sbjct: 215 -DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AKELGEVIVSGKFTIDDDVLNA 336
            + E ++ +  + G  P    +   ++  +  R + E A E+ + I     T +    N 
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTF-NMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNP 332

Query: 337 LIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ +         A+ F   M+  G  P + + + L   LC+  + D  VE+   L    
Sbjct: 333 ILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG 392

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + SYN ++  L  +G+  EA  ++ EM  KGL PD+  Y+++    CRE  +  A 
Sbjct: 393 CTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAI 452

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           K + ++   G   N   YN ++    +      A+ LF  M+  G  P+ +TYT L+EGL
Sbjct: 453 KAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGL 512

Query: 516 CQETNLQAAFEVFNKSVNHDVM 537
             E  ++ A E+  +  +  V+
Sbjct: 513 AYEGLVKEAREMMAELCSRGVV 534



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 161/416 (38%), Gaps = 83/416 (19%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C   R  EA +VL       C+PD ++Y  +   + + G        L   R+L 
Sbjct: 96  LIKKLCASGRTAEARRVL-----ASCEPDVMSYNAMVAGYCVTGQ-------LDNARRLV 143

Query: 292 VA----PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            A    P T  Y   I GL                  G+   D+                
Sbjct: 144 AAMPMEPDTYTYNTLIRGL-----------------CGRGRTDN---------------- 170

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+   + M+ +G VP + T + L +  CKR+   + V++   +       D+ +YNV+V
Sbjct: 171 -ALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           + +C  GR+ +A   ++ +   G +P+   YN +++  C  +    A+KL  +M   G  
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP 289

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ T+N+LIS     G +E A+ +   + + G  P++ +Y  +L   C++  +  A   
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 349

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587
               V+          +T + +LCR G                                 
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGG--------------------------------- 376

Query: 588 EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
           EV+ A+E +  +++   T +      +   L+ +   E  L LL+ +  K L  +I
Sbjct: 377 EVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDI 432



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 76  QQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           Q P +  +P  LSY+ IL +    ++++   + ++ +  +    D   Y  ++ +L +G 
Sbjct: 317 QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGG 376

Query: 134 NTQKAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
               A  + +++K   C  +     N+++  L   G  + AL++ +EM  +G++   I +
Sbjct: 377 EVDAAVELLHQLKDKGCTPVLISY-NTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITY 435

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
                  C   ++ + +    +V+    R N+++  +     I+ G CK +    A  + 
Sbjct: 436 STISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNA-----ILLGLCKRRATHSAIDLF 490

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
             +    C P+   Y I+ E     G V E   ++ +    GV  +T
Sbjct: 491 TYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVSKT 537


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 124/522 (23%), Positives = 228/522 (43%), Gaps = 11/522 (2%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           +S SL +++ + +    HSL   F    +  P  T     +  IL SL          S+
Sbjct: 21  ISTSLYSQLHHHHQDDEHSLVSSFNRILNINP--TPPIFEFGKILGSLVKINCYQTAISL 78

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
            ++++ N I  D   +  +I    Q  +T  +FSVF  +     +       +L+  L  
Sbjct: 79  HREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCL 138

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G I  AL   D++   G   + + +G  I   C   K+GQ  + L  +R+ +  ++  +
Sbjct: 139 KGQIHQALHFHDKVVALGFHLNKVCYGTLINGLC---KVGQTSAALQLLRRVDGKLVQPN 195

Query: 227 VIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           V+    II   CK K V EAF +  E+  +   PD + Y  +   F ++G + +   +  
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN 255

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VS 342
           K     + P    +   + G   E R+ EAK +  +++      D     +L+     V 
Sbjct: 256 KMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVK 315

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
            ++   +I  FN M + G    + + + +    CK  K DE + ++K +   +   D+ +
Sbjct: 316 QVNKAKSI--FNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN ++  LC SG++  A  ++ EM  +G+  D   YNS+++A C+   +  A  L  +M 
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK 433

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   ++ TY ILI    + G ++ A  +F ++L KG      TYT +++G C      
Sbjct: 434 DEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFD 493

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            A  + +K  ++  +         ++SL  +    +A KLLR
Sbjct: 494 KALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLR 535



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 46/392 (11%)

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           + A  +  E+       D + + I+   F  +G       V     K G  P        
Sbjct: 73  QTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTL 132

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA------------- 349
           I GL ++ +I +A    + +V+  F ++      LI  +  +   SA             
Sbjct: 133 IKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLV 192

Query: 350 ---IVFFNF--------------------MIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
              +V +N                     M+ KG  P + T S L    C   K ++ + 
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++  + + +   D+ +++++V   C  GR++EA  V+  M ++G+ PDV  Y SLM+  C
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC 312

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
               +  AK +++ M   G + N+++YNI+I+ F ++ +++ A+ LF  M  K + PD  
Sbjct: 313 LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVV 372

Query: 507 TYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           TY SL++GLC+   +  A     E+ ++ V HD +   SIL     +LC+      A  L
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILD----ALCKNHQVDKAIAL 428

Query: 563 LRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
           L  +  +    D  ++ IL+  L     ++ A
Sbjct: 429 LTKMKDEGIQPDMYTYTILIDGLCKGGRLKDA 460



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 177/458 (38%), Gaps = 47/458 (10%)

Query: 62  THHSLALGFFNWASQ--QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS 119
           TH S ++ F N   +  +PN     ++  +++K L L  QI+       +V      L+ 
Sbjct: 107 THFSFSV-FANILKKGYEPN----AITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK 161

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
             Y  +I  L +   T  A  +   V          + N+++  +     ++ A  ++ E
Sbjct: 162 VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 221

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCK 238
           M  +G+    + +   I  FC   KL   + + +++   E   IN  V    +++ GFCK
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE---INPDVYTFSILVDGFCK 278

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             RV+EA  VL  +  +  KPD + Y  + + + L+  V + + +     + GV      
Sbjct: 279 EGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQS 338

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-------------VSSID 345
           Y   I G    +++ EA  L + +       D    N+LI               V  + 
Sbjct: 339 YNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMH 398

Query: 346 PRS-----------------------AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            R                        AI     M ++G  P + T + L   LCK  +  
Sbjct: 399 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLK 458

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   +++ L    Y   + +Y VM+   C +    +A  ++ +M+  G  P+   Y  ++
Sbjct: 459 DAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +   +D    A+KL  +M A G     K    L ++F
Sbjct: 519 LSLFEKDENDMAEKLLREMIARGLLFGWKKAYCLFTRF 556



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +  ++ +  + +  + A  L  +M  +G + +L T+NILI+ FS++G    +  +
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F N+L+KG  P+A T T+L++GLC +  +  A    +K V     L +    T +  LC+
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            G    A +LLR +   L     +V++  ++ D+
Sbjct: 174 VGQTSAALQLLRRVDGKL--VQPNVVMYNTIIDS 205


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 205/441 (46%), Gaps = 15/441 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DGYIDNALKMFD 178
           +Y  +I +L +  N   A ++  +V F  E + P+       +L       +D+AL++F+
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKV-FESE-MSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIH 234
           +M+  G E +T+ +   I   C++ ++ +   ++ E+             G +IA+    
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL---- 330

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             C     E+A+++  +++ + C+P+   Y  +     + G +     +  +  + GV P
Sbjct: 331 --CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
            T  Y   I  L+  RRI  A  +  ++     + +    N +I     + DP+ A++  
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N M+++G    L T + + K  C    +   + +  ++       D  SY  ++   C  
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            ++  A+G+  EM   GL P+   Y +L++  C+++ L  A  L + M  SGC  N++TY
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N+LI   ++     GA  L   M+E+G+ P+  TYT++++GLC+  +   A E+FNK + 
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 534 HDVMLARSILSTFMISLCRRG 554
              +      S+ + +L + G
Sbjct: 629 QGCLPNLLTYSSLIRALGQEG 649



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/492 (20%), Positives = 203/492 (41%), Gaps = 42/492 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L Y++++ +L     +   ++++K+V  ++++ D+  Y  +I    +  +  
Sbjct: 212 QPNL----LIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 137 KAFSVFNEV-KFNCE--------------DIG--------------------PEICNSLL 161
            A  VFN++ K  CE              D G                       C   +
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  ++A ++F +M ++G E +   +   I   C +  L   + +    R   + 
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH--RMSRDG 385

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V    +I+   + +R++ AF VL+ +    C P+ + Y  + + + ++G   +  
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           +V+    + G +     Y   I G         A  + +++  G    D+     LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             I    SA   FN M++ G  P   T + L    CK  K D    + + +  +    ++
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YNV++  L        A  + + M  +G+ P+V  Y ++++  C+      A +++++
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC  NL TY+ LI    + G++E A  LF  +   G+ PD  TY  ++E       
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 521 LQAAFEVFNKSV 532
           ++ AF    + +
Sbjct: 686 VEHAFNFLGRMI 697



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 192/470 (40%), Gaps = 31/470 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  L +S  +     +  ++  + +  ++  Y  +I  L++ +  + AF V N +
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             N     P I   N ++      G    A+ + + M  RG   + + +   I  +C++ 
Sbjct: 417 GRN--GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG 474

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                L +LD +R         S     +I GFCK  ++E AF + +E+      P+ + 
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTE--LICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +     +     +L+  ++ G  P    Y   I GL  +     A+EL +V++
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 +     A+I  +      S A+  FN MIE+G +P L T S+L + L +  K +
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E   ++  L  +    D  +Y  M+     SG++  A+  +  M + G  P +  Y  L+
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 443 EACCREDLLRPAK---------------KLWDQMFASGCSGNL---------KTYNILIS 478
           +    E LL   +               +  DQ   S  S  L         +  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             S  G    A  L  +M+ +G+ PD   Y SLL  L +  N+  A  VF
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVF 822



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 119/543 (21%), Positives = 210/543 (38%), Gaps = 69/543 (12%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A+G F+  S+   F ++ ++Y++++  L  +R+I     VL  +  N  + +   Y  +
Sbjct: 373 VAIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I       + +KA  V N +            N+++      G   +AL++ D M   G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           +     +   I  FC+ +K+     + +E+   ++ +    V    +I G+CK ++++ A
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 246 FKVLDELRIRECKPDFIAYRIV------------AEEF-KLM------------------ 274
             +L+ ++   C+P+   Y ++            AEE  K+M                  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 275 ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
               GS      +  K  + G  P    Y   I  L  E ++ EA+ L  E+   G    
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPD 669

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL-------------- 375
           +   +  +   + S     A  F   MI+ G  PTL T   L K L              
Sbjct: 670 EITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL 729

Query: 376 ------CKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                 C         +   V+SA     D    ++  N +VS L T+GR  EA  ++  
Sbjct: 730 PDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +GL PD   YNSL+ +  R   +  A  ++  M   GC  +L  Y  LI    ++  
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHR 849

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + A   F NML +   PD      L++GL ++       E  +      +M  R  + +
Sbjct: 850 RKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH------IMETRRYMPS 903

Query: 546 FMI 548
           F I
Sbjct: 904 FHI 906



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + + + G    L   S L  +L +   +  +++ Y  + +     ++  YN +++ LC
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + +A  +++++    + PD   Y S++   CR+  L  A ++++QM   GC  N  
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--- 528
           TY+ LI+   + G +  A  L   M+  G+ P A T T  +  LC     + A+ +F   
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 529 -NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLAD 585
            NK    +V    +++S     LC  G   VA  L   +S D    ++ ++  L+  L +
Sbjct: 347 KNKGCEPNVYTYTALIS----GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402

Query: 586 AREVEMA 592
            R ++ A
Sbjct: 403 NRRIKYA 409



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 68/455 (14%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A G FN          + ++Y +++       +++   S+L+ +K +    +   Y    
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV-- 570

Query: 127 PSLIQGKNTQKAFSVFNEVKFNC-----EDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
             LI G   Q  FS   E+   C     E I P +    +++  L  +G    AL+MF++
Sbjct: 571 --LIHGLTKQNNFSGAEEL---CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  +G   + + +   I    +  K+ +  ++  E+ +  + +I   +  V +I  +   
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER--HGLIPDEITYVKMIEAYIMS 683

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +VE AF  L  +    C+P    Y ++ +  K                        N+Y
Sbjct: 684 GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLK------------------------NEY 719

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
                 L+ ++R+    ++      G  T D D ++ +   ++ +DP  ++   N ++  
Sbjct: 720 ------LLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS- 772

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE- 418
                         NL    +  E  E+   + +     D E+YN   S LC+  R+R  
Sbjct: 773 --------------NLSTAGRWFEANELLGSMISQGLCPDQEAYN---SLLCSLLRVRNV 815

Query: 419 --AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A GV + M  +G +  ++ Y  L+ A C+    + A+  ++ M     + +     +L
Sbjct: 816 DLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVL 875

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           I      G  +  +   H M  +   P    YT L
Sbjct: 876 IDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+++C  ++ +       D +  SG    L  Y+ L+   S +G     +  +H ML +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V P+   Y +++  LC++ N+  A  +  K    ++       ++ ++  CR+     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 561 KLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           ++   ++ +    +  ++  L+  L D+  V  A + I+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 215/485 (44%), Gaps = 11/485 (2%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           ++ DS  Y  +I  L +      A  +F ++  +          SL+  L      D+A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++F +M+ RG   S + + V I   C+   L +   ++ ++   E+  +   V    ++ 
Sbjct: 66  ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMI--EDGHVPDVVTYNTVMD 123

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK  RVEEA  + +E+    C P+  ++  +         + +   V  +     + P
Sbjct: 124 GLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPP 183

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
            +  Y   I GL    ++ EA +L   ++    T      N +I G   +     A+  F
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M  KG  P+  T + L    CKR K DE   + K ++ + +  D+ +Y+ ++S LC+ 
Sbjct: 244 KSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 303

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            R+ +A  ++++M ++   P V   N+L+   C+   ++ A+++ D M +SG S ++ TY
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 363

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N L+      G+ E A  L  +M+ +G+AP+  TYT+L+ GLC+   L  A  VF +  +
Sbjct: 364 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 423

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI-------LLKSLADA 586
                     +  ++  C  G      KL  G     G S  HV+       L KS   A
Sbjct: 424 SGCAPNLFTYTALILGFCSAGQVDGGLKLF-GEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 587 REVEM 591
           R +E+
Sbjct: 483 RALEI 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E+   P   +   L   L K  K ++  ++++ L  +       +Y  ++  LC +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +A  +  +M R+G  P    YN +++A C+  +L  A  L  +M   G   ++ TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           ++    + G +E AL LF+ M   G  P+  ++ +++ GLCQ++ +  A +VF++    D
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLR 564
           +          +  L + G    A KL R
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFR 209



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 141/379 (37%), Gaps = 40/379 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY  ++  L+ + ++N    + +++  + IT  +  Y  +I  +       +A  +F  +
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +           N L+      G +D A ++   M+  G     + +   I   C  A++
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +L+++ KR+       V    +IHG CK  R++EA +VLD +      PD + Y 
Sbjct: 307 DDARHLLEDMVKRQCKPT--VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +       G       +L      G+AP    Y   + GL    R+ EA  +   + S 
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS--- 381
               +     ALI G  S+      +  F  M+  G  P       L+  LCK  +S   
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 382 -------------------------DELVEVYKVLSANDYFTDM---------ESYNVMV 407
                                    D L++  K+  A  +  DM         E    +V
Sbjct: 485 LEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLV 544

Query: 408 SFLCTSGRLREAYGVIQEM 426
           + LC SG+  EA  V++E+
Sbjct: 545 AGLCKSGQGGEARAVLEEI 563



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/219 (17%), Positives = 86/219 (39%), Gaps = 23/219 (10%)

Query: 51  LVARVINPYLLTHHSLALGFFNW---------------ASQQPNFTHSPLSYHSILKSLS 95
           +V R   P ++T ++L  G                   + Q P+     ++Y++++    
Sbjct: 316 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV----VTYNTLVHGHC 371

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
            + Q      +L  +    +  +   Y  ++  L +     +A  VF ++K +     P 
Sbjct: 372 RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS--GCAPN 429

Query: 156 I--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           +    +L+    S G +D  LK+F EM   G+    + +G    + C++ +  + L +L 
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           E R+   S   G  +    + G     ++E A   + ++
Sbjct: 490 EGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDM 528


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 204/441 (46%), Gaps = 15/441 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DGYIDNALKMFD 178
           +Y  +I +L +  N   A ++  +V F  E + P+       +L       +D+AL++F+
Sbjct: 387 IYNAVINALCKDGNVADAETIMKKV-FESE-MSPDTFTYTSMILGHCRKHDLDSALQVFN 444

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIH 234
           +M+  G E +T+ +   I   C++ ++ +   ++ E+             G +IA+    
Sbjct: 445 QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL---- 500

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             C     E+A+++  +++ + C+P+   Y  +     + G +     +  +  + GV P
Sbjct: 501 --CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 558

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
            T  Y   I  L+  RRI  A  +  ++       +    N +I     + DP+ A++  
Sbjct: 559 NTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVM 618

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N M+++G    L T + + K  C    +   + +  ++       D  SY  ++   C  
Sbjct: 619 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 678

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            ++  A+G+  EM   GL P+   Y +L++  C+++ L  A  L + M  SGC  N++TY
Sbjct: 679 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 738

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N+LI   ++     GA  L   M+E+G+ P+  TYT++++GLC+  +   A E+FNK + 
Sbjct: 739 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 798

Query: 534 HDVMLARSILSTFMISLCRRG 554
              +      S+ + +L + G
Sbjct: 799 QGCLPNLLTYSSLIRALGQEG 819



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/492 (20%), Positives = 201/492 (40%), Gaps = 42/492 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L Y++++ +L     +   ++++K+V  ++++ D+  Y  +I    +  +  
Sbjct: 382 QPNL----LIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 437

Query: 137 KAFSVFNEV-KFNCE--------------DIG--------------------PEICNSLL 161
            A  VFN++ K  CE              D G                       C   +
Sbjct: 438 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 497

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  ++A ++F +M ++G E +   +   I   C +  L   + +    R   + 
Sbjct: 498 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH--RMSRDG 555

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V    +I+   + +R++ AF VL+ +       + + Y  + + + ++G   +  
Sbjct: 556 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAM 615

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           +V+    + G +     Y   I G         A  + +++  G    D+     LI   
Sbjct: 616 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 675

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             I    SA   FN M++ G  P   T + L    CK  K D    + + +  +    ++
Sbjct: 676 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 735

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YNV++  L        A  + + M  +G+ P+V  Y ++++  C+      A +++++
Sbjct: 736 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 795

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC  NL TY+ LI    + G++E A  LF  +   G+ PD  TY  ++E       
Sbjct: 796 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855

Query: 521 LQAAFEVFNKSV 532
           ++ AF    + +
Sbjct: 856 VEHAFNFLGRMI 867



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 190/468 (40%), Gaps = 27/468 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  L +S  +     +  ++  + +  ++  Y  +I  L++ +  + AF V N +
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 586

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             N         N ++      G    A+ + + M  RG   + + +   I  +C++   
Sbjct: 587 GRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 646

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              L +LD +R         S     +I GFCK  ++E AF + +E+      P+ + Y 
Sbjct: 647 TSALRILDLMRDGGCKPDEWSYTE--LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYT 704

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + +     +     +L+  ++ G  P    Y   I GL  +     A+EL +V++  
Sbjct: 705 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 764

Query: 326 KFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +     A+I  +      S A+  FN MIE+G +P L T S+L + L +  K +E 
Sbjct: 765 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 824

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
             ++  L  +    D  +Y  M+     SG++  A+  +  M + G  P +  Y  L++ 
Sbjct: 825 ENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 884

Query: 445 CCREDLLRPAK---------------KLWDQMFASGCSGNL---------KTYNILISKF 480
              E LL   +               +  DQ   S  S  L         +  N L+S  
Sbjct: 885 LKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNL 944

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           S  G    A  L  +M+ +G+ PD   Y SLL  L +  N+  A  VF
Sbjct: 945 STAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVF 992



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 122/560 (21%), Positives = 230/560 (41%), Gaps = 42/560 (7%)

Query: 67  ALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           AL  FN  +++   PN     ++Y +++  L  S ++N    +++++ ++ I   +    
Sbjct: 439 ALQVFNQMAKEGCEPN----TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 494

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
             I +L      + A+ +F ++K    +       +L++ L   G +  A+ +F  MS  
Sbjct: 495 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 554

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           GV  +T+ +   I    EN ++     +L+ + +  N +    V    +I G+C     +
Sbjct: 555 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGR--NGLFTNIVTYNEMIKGYCILGDPK 612

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A  V++ +  R    + + Y  + + +   G+      +L   R  G  P    Y E I
Sbjct: 613 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 672

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            G     ++  A  L   +V      ++    ALI G        +A      M   G  
Sbjct: 673 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 732

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L   L K+N      E+ KV+     F ++ +Y  M+  LC +G    A  +
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             +M  +G  P++  Y+SL+ A  +E  +  A+ L+ ++   G   +  TY  +I  +  
Sbjct: 793 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE-----------------------T 519
            G++E A      M++ G  P   TY  L++GL  E                       T
Sbjct: 853 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 912

Query: 520 NLQAAFEVFN-KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHS 573
             Q A  V + K    D  L+  + +  + +L   G +  A +LL     +GL  D    
Sbjct: 913 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD---Q 969

Query: 574 DSHVILLKSLADAREVEMAI 593
           +++  LL SL   R V++A+
Sbjct: 970 EAYNSLLCSLLRVRNVDLAM 989



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 119/543 (21%), Positives = 210/543 (38%), Gaps = 69/543 (12%)

Query: 66   LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
            +A+G F+  S+   F ++ ++Y++++  L  +R+I     VL  +  N +  +   Y  +
Sbjct: 543  VAIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEM 601

Query: 126  IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
            I       + +KA  V N +            N+++      G   +AL++ D M   G 
Sbjct: 602  IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 661

Query: 186  EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
            +     +   I  FC+ +K+     + +E+   ++ +    V    +I G+CK ++++ A
Sbjct: 662  KPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYTALIDGYCKDEKLDTA 719

Query: 246  FKVLDELRIRECKPDFIAYRIV------------AEEF-KLM------------------ 274
              +L+ ++   C+P+   Y ++            AEE  K+M                  
Sbjct: 720  TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 779

Query: 275  ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
                GS      +  K  + G  P    Y   I  L  E ++ EA+ L  E+   G    
Sbjct: 780  LCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPD 839

Query: 330  DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL-------------- 375
            +   +  +   + S     A  F   MI+ G  PTL T   L K L              
Sbjct: 840  EITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL 899

Query: 376  ------CKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                  C         +   V+SA     D    ++  N +VS L T+GR  EA  ++  
Sbjct: 900  PDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 959

Query: 426  MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
            M  +GL PD   YNSL+ +  R   +  A  ++  M   GC  +L  Y  LI    ++  
Sbjct: 960  MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHR 1019

Query: 486  IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
             + A   F NML +   PD      L++GL ++       E  +      +M  R  + +
Sbjct: 1020 RKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH------IMETRRYMPS 1073

Query: 546  FMI 548
            F I
Sbjct: 1074 FHI 1076



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + + + G    L   S L  +L +   +  +++ Y  + +     ++  YN +++ LC
Sbjct: 337 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 396

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + +A  +++++    + PD   Y S++   CR+  L  A ++++QM   GC  N  
Sbjct: 397 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 456

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--- 528
           TY+ LI+   + G +  A  L   M+  G+ P A T T  +  LC     + A+ +F   
Sbjct: 457 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 516

Query: 529 -NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLAD 585
            NK    +V    +++S     LC  G   VA  L   +S D    ++ ++  L+  L +
Sbjct: 517 KNKGCEPNVYTYTALIS----GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVE 572

Query: 586 AREVEMA 592
            R ++ A
Sbjct: 573 NRRIKYA 579



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 68/455 (14%)

Query: 67   ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
            A G FN          + ++Y +++       +++   S+L+ +K +    +   Y    
Sbjct: 684  AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV-- 740

Query: 127  PSLIQGKNTQKAFSVFNEVKFNC-----EDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
              LI G   Q  FS   E+   C     E I P +    +++  L  +G    AL+MF++
Sbjct: 741  --LIHGLTKQNNFSGAEEL---CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 795

Query: 180  MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
            M  +G   + + +   I    +  K+ +  ++  E+ +  + +I   +  V +I  +   
Sbjct: 796  MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER--HGLIPDEITYVKMIEAYIMS 853

Query: 240  KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             +VE AF  L  +    C+P    Y ++ +  K                        N+Y
Sbjct: 854  GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLK------------------------NEY 889

Query: 300  REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
                  L+ ++R+    ++      G  T D D ++ +   ++ +DP  ++   N ++  
Sbjct: 890  ------LLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALV-- 941

Query: 360  GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE- 418
                          NL    +  E  E+   + +     D E+YN   S LC+  R+R  
Sbjct: 942  -------------SNLSTAGRWFEANELLGSMISQGLCPDQEAYN---SLLCSLLRVRNV 985

Query: 419  --AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
              A GV + M  +G +  ++ Y  L+ A C+    + A+  ++ M     + +     +L
Sbjct: 986  DLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVL 1045

Query: 477  ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            I      G  +  +   H M  +   P    YT L
Sbjct: 1046 IDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 1080



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+++C  ++ +       D +  SG    L  Y+ L+   S +G     +  +H ML +G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V P+   Y +++  LC++ N+  A  +  K    ++       ++ ++  CR+     A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 561 KLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           ++   ++ +    +  ++  L+  L D+  V  A + I+
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 479


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 205/441 (46%), Gaps = 15/441 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DGYIDNALKMFD 178
           +Y  +I +L +  N   A ++  +V F  E + P+       +L       +D+AL++F+
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKV-FESE-MSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIH 234
           +M+  G E +T+ +   I   C++ ++ +   ++ E+             G +IA+    
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL---- 330

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             C     E+A+++  +++ + C+P+   Y  +     + G +     +  +  + GV P
Sbjct: 331 --CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFP 388

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
            T  Y   I  L+  RRI  A  +  ++     + +    N +I     + DP+ A++  
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N M+++G    L T + + K  C    +   + +  ++       D  SY  ++   C  
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            ++  A+G+  EM   GL P+   Y +L++  C+++ L  A  L + M  SGC  N++TY
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N+LI   ++     GA  L   M+E+G+ P+  TYT++++GLC+  +   A E+FNK + 
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 534 HDVMLARSILSTFMISLCRRG 554
              +      S+ + +L + G
Sbjct: 629 QGCLPNLLTYSSLIRALGQEG 649



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/492 (20%), Positives = 203/492 (41%), Gaps = 42/492 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L Y++++ +L     +   ++++K+V  ++++ D+  Y  +I    +  +  
Sbjct: 212 QPNL----LIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 137 KAFSVFNEV-KFNCE--------------DIG--------------------PEICNSLL 161
            A  VFN++ K  CE              D G                       C   +
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  ++A ++F +M ++G E +   +   I   C +  L   + +    R   + 
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFH--RMSRDG 385

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V    +I+   + +R++ AF VL+ +    C P+ + Y  + + + ++G   +  
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           +V+    + G +     Y   I G         A  + +++  G    D+     LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             I    SA   FN M++ G  P   T + L    CK  K D    + + +  +    ++
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YNV++  L        A  + + M  +G+ P+V  Y ++++  C+      A +++++
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC  NL TY+ LI    + G++E A  LF  +   G+ PD  TY  ++E       
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 521 LQAAFEVFNKSV 532
           ++ AF    + +
Sbjct: 686 VEHAFNFLGRMI 697



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 192/470 (40%), Gaps = 31/470 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  L +S  +     +  ++  + +  ++  Y  +I  L++ +  + AF V N +
Sbjct: 357 TYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             N     P I   N ++      G    A+ + + M  RG   + + +   I  +C++ 
Sbjct: 417 GRN--GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG 474

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                L +LD +R         S     +I GFCK  ++E AF + +E+      P+ + 
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTE--LICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +     +     +L+  ++ G  P    Y   I GL  +     A+EL +V++
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 +     A+I  +      S A+  FN MIE+G +P L T S+L + L +  K +
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E   ++  L  +    D  +Y  M+     SG++  A+  +  M + G  P +  Y  L+
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 443 EACCREDLLRPAK---------------KLWDQMFASGCSGNL---------KTYNILIS 478
           +    E LL   +               +  DQ   S  S  L         +  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             S  G    A  L  +M+ +G+ PD   Y SLL  L +  N+  A  VF
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVF 822



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 119/543 (21%), Positives = 210/543 (38%), Gaps = 69/543 (12%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A+G F+  S+   F ++ ++Y++++  L  +R+I     VL  +  N  + +   Y  +
Sbjct: 373 VAIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I       + +KA  V N +            N+++      G   +AL++ D M   G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           +     +   I  FC+ +K+     + +E+   ++ +    V    +I G+CK ++++ A
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 246 FKVLDELRIRECKPDFIAYRIV------------AEEF-KLM------------------ 274
             +L+ ++   C+P+   Y ++            AEE  K+M                  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 275 ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
               GS      +  K  + G  P    Y   I  L  E ++ EA+ L  E+   G    
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPD 669

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL-------------- 375
           +   +  +   + S     A  F   MI+ G  PTL T   L K L              
Sbjct: 670 EITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL 729

Query: 376 ------CKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                 C         +   V+SA     D    ++  N +VS L T+GR  EA  ++  
Sbjct: 730 PDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +GL PD   YNSL+ +  R   +  A  ++  M   GC  +L  Y  LI    ++  
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHR 849

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + A   F NML +   PD      L++GL ++       E  +      +M  R  + +
Sbjct: 850 RKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH------IMETRRYMPS 903

Query: 546 FMI 548
           F I
Sbjct: 904 FHI 906



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + + + G    L   S L  +L +   +  +++ Y  + +     ++  YN +++ LC
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + +A  +++++    + PD   Y S++   CR+  L  A ++++QM   GC  N  
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--- 528
           TY+ LI+   + G +  A  L   M+  G+ P A T T  +  LC     + A+ +F   
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 529 -NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLAD 585
            NK    +V    +++S     LC  G   VA  L   +S D    ++ ++  L+  L +
Sbjct: 347 KNKGCEPNVYTYTALIS----GLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402

Query: 586 AREVEMA 592
            R ++ A
Sbjct: 403 NRRIKYA 409



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 68/455 (14%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A G FN          + ++Y +++       +++   S+L+ +K +    +   Y    
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV-- 570

Query: 127 PSLIQGKNTQKAFSVFNEVKFNC-----EDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
             LI G   Q  FS   E+   C     E I P +    +++  L  +G    AL+MF++
Sbjct: 571 --LIHGLTKQNNFSGAEEL---CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  +G   + + +   I    +  K+ +  ++  E+ +  + +I   +  V +I  +   
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER--HGLIPDEITYVKMIEAYIMS 683

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +VE AF  L  +    C+P    Y ++ +  K                        N+Y
Sbjct: 684 GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLK------------------------NEY 719

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
                 L+ ++R+    ++      G  T D D ++ +   ++ +DP  ++   N ++  
Sbjct: 720 ------LLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALV-- 771

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE- 418
                         NL    +  E  E+   + +     D E+YN   S LC+  R+R  
Sbjct: 772 -------------SNLSTAGRWFEANELLGSMISQGLCPDQEAYN---SLLCSLLRVRNV 815

Query: 419 --AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A GV + M  +G +  ++ Y  L+ A C+    + A+  ++ M     + +     +L
Sbjct: 816 DLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVL 875

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           I      G  +  +   H M  +   P    YT L
Sbjct: 876 IDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+++C  ++ +       D +  SG    L  Y+ L+   S +G     +  +H ML +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V P+   Y +++  LC++ N+  A  +  K    ++       ++ ++  CR+     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 561 KLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           ++   ++ +    +  ++  L+  L D+  V  A + I+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 212/476 (44%), Gaps = 21/476 (4%)

Query: 68  LGF-FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LGF F+  ++     H P   ++ ++++ L +  +I     +  ++       +   Y  
Sbjct: 120 LGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGT 179

Query: 125 IIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
           +I  L +  NT  A  +   + + NC+   P++    S++  L  D  +  A  +F +M 
Sbjct: 180 LINGLCKVGNTNAAIRLLRSMEQGNCQ---PDVVVYTSIIDSLCKDRQVTEAFNLFSKMV 236

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII-----HGF 236
            +G+      +   I   C   +   V ++L       N MIN  ++  ++I        
Sbjct: 237 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLL-------NQMINSKIMPDVVIFSTVVDAL 289

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  ++ EA  V+D + IR  +P+ + Y  + +   L   + E   V       G AP  
Sbjct: 290 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 349

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y   I G    +R+ +A  L E +   +   +    N L+        + AI  F+ M
Sbjct: 350 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEM 409

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +  G++P L+T   L   LCK++  DE + + K +  ++   D++ Y +++  +C +G L
Sbjct: 410 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 469

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A  +   +  KGL P+V  Y  ++   CR  LL  A KL+ +M  +GCS +  TYN +
Sbjct: 470 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTI 529

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
                +  E   A++L   ML +G + D +T T L+E LC +   Q+  ++ ++ V
Sbjct: 530 TQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 585



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/533 (22%), Positives = 217/533 (40%), Gaps = 60/533 (11%)

Query: 58  PYL--LTH---HSLALGFFNWASQQPNFT-----HSPLS---YHSILKSLSLSRQINAID 104
           PY   L+H   HS +L F        +F      H P S   ++ +L S++ ++Q   + 
Sbjct: 30  PYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVF 89

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           S+  Q+    I  D      +I S         AFSV  ++             +L+  L
Sbjct: 90  SLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGL 149

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G I +AL +FD+M   G + + + +G  I   C   K+G   + +  +R  E     
Sbjct: 150 CVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC---KVGNTNAAIRLLRSMEQGNCQ 206

Query: 225 GSVIAVL-IIHGFCKGKRVEEAFKV----------------------------------- 248
             V+    II   CK ++V EAF +                                   
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTL 266

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           L+++   +  PD + +  V +     G + E   V+      GV P    Y   + G  +
Sbjct: 267 LNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 326

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLST 367
           +  + EA ++ + +V   +  +    N LI     I     A   F  M +K  +P   T
Sbjct: 327 QSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVT 386

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + L  + C   +  + + ++  + A+    D+ +Y +++ +LC    L EA  +++ ++
Sbjct: 387 YNTL-MHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE 445

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
              +DPD+  Y  +++  CR   L  A+ ++  + + G   N++TY I+I+     G ++
Sbjct: 446 GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD 505

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            A +LF  M   G +PD  TY ++ +GL Q      A ++  +      MLAR
Sbjct: 506 EANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE------MLAR 552



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 193/427 (45%), Gaps = 8/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     ST+ F   +    +  +   V S+ +++   ++  I   V  
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQM---DSFGIPPDVYT 106

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC   R+  AF VL ++     +PD   +  +     + G + +   +  K  
Sbjct: 107 LNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 166

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   I GL        A  L   +  G    D  V  ++I S+       
Sbjct: 167 GEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 226

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ M+ +G  P + T ++L  +LC   +   +  +   +  +    D+  ++ +V
Sbjct: 227 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVV 286

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G++ EA+ V+  M  +G++P+V  YN+LM+  C +  +  A K++D M  +G +
Sbjct: 287 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 346

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  ++ A  LF  M +K + P+  TY +L+   C    LQ A  +
Sbjct: 347 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIAL 405

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V H  +   +     +  LC++ H   A  LL+ +       D  +  I++  +  
Sbjct: 406 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 465

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 466 AGELEAA 472



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 171/412 (41%), Gaps = 4/412 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  +A          + ++M   G+        + I  FC   +LG   S+L ++ K
Sbjct: 73  NRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILK 132

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             +     +     +I G C   ++ +A  + D++     +P+ + Y  +      +G+ 
Sbjct: 133 LGHQPDTATFTT--LIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 190

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L+   +    P    Y   I  L  +R++ EA  L   +V    + D     +L
Sbjct: 191 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 250

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+ ++ + +      N MI    +P +   S +   LCK  K  E  +V  ++     
Sbjct: 251 IHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGV 310

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YN ++   C    + EA  V   M   G  P+V  YN+L+   C+   +  A  
Sbjct: 311 EPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATY 370

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++M       N  TYN L+     VG ++ A+ LFH M+  G  PD  TY  LL+ LC
Sbjct: 371 LFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 429

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           ++++L  A  +       ++     I +  +  +CR G    A  +   LSS
Sbjct: 430 KKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSS 481



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 161/372 (43%), Gaps = 10/372 (2%)

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K K+    F + +++      PD     I+   F  +  +     VL K  KLG  P T 
Sbjct: 81  KTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTA 140

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            +   I GL VE +I +A  L + ++   F  +      LI  +  +   +A +     +
Sbjct: 141 TFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM 200

Query: 358 EKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           E+G   P +   +++  +LCK  +  E   ++  +       D+ +Y  ++  LC     
Sbjct: 201 EQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEW 260

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           +    ++ +M    + PDV  ++++++A C+E  +  A  + D M   G   N+ TYN L
Sbjct: 261 KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 320

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +       E++ A+++F  M+  G AP+  +Y +L+ G C+   +  A  +F +    + 
Sbjct: 321 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE- 379

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEM 591
           ++  ++    ++  C  G    A  L       G   DL    ++ ILL  L     ++ 
Sbjct: 380 LIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLA---TYRILLDYLCKKSHLDE 436

Query: 592 AIEHIKWIQESS 603
           A+  +K I+ S+
Sbjct: 437 AMALLKTIEGSN 448



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           VLS   YF+ + S+N   S       L +A      M      P    +N L+ +  +  
Sbjct: 25  VLSLPPYFSSL-SHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTK 83

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
                  L +QM + G   ++ T NILI+ F  +  +  A  +   +L+ G  PD  T+T
Sbjct: 84  QYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFT 143

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L+ GLC E  +  A  +F+K +            T +  LC+ G+   A +LLR  S +
Sbjct: 144 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR--SME 201

Query: 570 LGHSDSHVILLKSLADA 586
            G+    V++  S+ D+
Sbjct: 202 QGNCQPDVVVYTSIIDS 218


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 197/427 (46%), Gaps = 10/427 (2%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASDGYIDNALKMF 177
           S+V+  ++ S       +KA ++ +  K N    G    N++L +++     +  A K++
Sbjct: 132 SAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVY 191

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM   GV  +   + + I  FC    L   L   +E+ +  N  +   V    +I  +C
Sbjct: 192 REMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMER--NRCLPNVVTYNTVIGAYC 249

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K KR++EAFK+L  + +   +P+ + Y +V      +G + E   VL +  + G AP   
Sbjct: 250 KLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGV 309

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFM 356
            Y   + G        +A  L   ++      D     +LI ++    +   A+ FF+ M
Sbjct: 310 TYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM 369

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
             +G  P   T ++L     ++   DE   ++  +  + +   + +YN +++  C SGR+
Sbjct: 370 HVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRM 429

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA G+++ M+ KGL PDV  Y++++   CR   L  A ++  +M   G S +  TY+ L
Sbjct: 430 EEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSL 489

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I    E   +  A  LF  ML K + PD  TYTSL+ G C+E +L  A  +      HD 
Sbjct: 490 IQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL------HDE 543

Query: 537 MLARSIL 543
           M+ +  L
Sbjct: 544 MIKKGFL 550



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 211/524 (40%), Gaps = 23/524 (4%)

Query: 80  FTHSPLSYHSILKSLSLSRQ-INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           F    LSY++IL S+   R+ +   + V +++  + ++L+   Y  +I       N +  
Sbjct: 163 FMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMG 222

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
              F E++ N         N+++        ID A K+   M   G+E + + + + I  
Sbjct: 223 LRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVING 282

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   ++ +   +L E+ ++        V    +++G+CK     +A  +  E+      
Sbjct: 283 LCRVGRIEETSGVLAEMDRK--GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + Y  +       G++        +    G+ P    Y   I G   +  + EA  +
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + ++   F       NAL+ G   S     AI     M  KG  P + + S +    C+
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + D   ++   +       D  +Y+ ++  LC   RL EA  + QEM  K L PD   
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFT 520

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y SL+   C+E  L  A  L D+M   G   +  TYN+LI+  ++      A RL   + 
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLF 580

Query: 498 EKGVAPDATTYTSLLE---------------GLCQETNLQAAFEVFNKSVNHDVMLARSI 542
                P+  TY +L+E               G C +  +  A +VF   +  +     ++
Sbjct: 581 YDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAV 640

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLG---HSDSHVILLKSL 583
            +  +   CR G+   A KL + +  D G   H+ + + L+K+L
Sbjct: 641 YNVIIHGHCRDGNVHKAHKLYKEM-VDFGFIPHTVTIIALVKAL 683



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 208/476 (43%), Gaps = 34/476 (7%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     L+Y+ ++  L    +I     VL ++       D   Y  ++    +  N  
Sbjct: 270 EPNL----LTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  + +E+  N   + P++    SL+  +   G ++ A++ FD+M  RG+  + + +  
Sbjct: 326 QALVLHSEMLRN--GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELR 253
            I  F +   + +   + DE+ +   S    +++    +++G C   R+EEA  +L  + 
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIR---SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGME 440

Query: 254 IRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
            +   PD ++Y  +   F   + +   F+    + +K   GV+P    Y   I GL  +R
Sbjct: 441 GKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEK---GVSPDAITYSSLIQGLCEQR 497

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+ EA +L + +++     D+    +LI G     D   A+   + MI+KG +P   T +
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYN 557

Query: 370 NLSKNLCKRNKSDE----LVEVY---KVLSANDYFTDMESYN--------VMVSFLCTSG 414
            L   L K+ ++ E    L++++    + +   Y T +ES +         ++   C  G
Sbjct: 558 VLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKG 617

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            + EA  V + M ++   P+ + YN ++   CR+  +  A KL+ +M   G   +  T  
Sbjct: 618 LMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTII 677

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            L+      G  E    +  ++L      DA    +L++   +E N+ A F +  +
Sbjct: 678 ALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTE 733


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 205/441 (46%), Gaps = 15/441 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DGYIDNALKMFD 178
           +Y  +I +L +  N   A ++  +V F  E + P+       +L       +D+AL++F+
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKV-FESE-MSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIH 234
           +M+  G E +T+ +   I   C++ ++ +   ++ E+             G +IA+    
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL---- 330

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             C     E+A+++  +++ + C+P+   Y  +     + G +     +  +  + GV P
Sbjct: 331 --CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
            T  Y   I  L+  RRI  A  +  ++     + +    N +I     + DP+ A++  
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N M+++G    L T + + K  C    +   + +  ++       D  SY  ++   C  
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            ++  A+G+  EM   GL P+   Y +L++  C+++ L  A  L + M  SGC  N++TY
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N+LI   ++     GA  L   M+E+G+ P+  TYT++++GLC+  +   A E+FNK + 
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 534 HDVMLARSILSTFMISLCRRG 554
              +      S+ + +L + G
Sbjct: 629 QGCLPNLLTYSSLIRALGQEG 649



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/492 (20%), Positives = 203/492 (41%), Gaps = 42/492 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L Y++++ +L     +   ++++K+V  ++++ D+  Y  +I    +  +  
Sbjct: 212 QPNL----LIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 137 KAFSVFNEV-KFNCE--------------DIG--------------------PEICNSLL 161
            A  VFN++ K  CE              D G                       C   +
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  ++A ++F +M ++G E +   +   I   C +  L   + +    R   + 
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH--RMSRDG 385

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V    +I+   + +R++ AF VL+ +    C P+ + Y  + + + ++G   +  
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           +V+    + G +     Y   I G         A  + +++  G    D+     LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             I    SA   FN M++ G  P   T + L    CK  K D    + + +  +    ++
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YNV++  L        A  + + M  +G+ P+V  Y ++++  C+      A +++++
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC  NL TY+ LI    + G++E A  LF  +   G+ PD  TY  ++E       
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 521 LQAAFEVFNKSV 532
           ++ AF    + +
Sbjct: 686 VEHAFNFLGRMI 697



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 192/470 (40%), Gaps = 31/470 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  L +S  +     +  ++  + +  ++  Y  +I  L++ +  + AF V N +
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             N     P I   N ++      G    A+ + + M  RG   + + +   I  +C++ 
Sbjct: 417 GRN--GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG 474

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                L +LD +R         S     +I GFCK  ++E AF + +E+      P+ + 
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTE--LICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +     +     +L+  ++ G  P    Y   I GL  +     A+EL +V++
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 +     A+I  +      S A+  FN MIE+G +P L T S+L + L +  K +
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E   ++  L  +    D  +Y  M+     SG++  A+  +  M + G  P +  Y  L+
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 443 EACCREDLLRPAK---------------KLWDQMFASGCSGNL---------KTYNILIS 478
           +    E LL   +               +  DQ   S  S  L         +  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             S  G    A  L  +M+ +G+ PD   Y SLL  L +  N+  A  VF
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVF 822



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 119/543 (21%), Positives = 210/543 (38%), Gaps = 69/543 (12%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A+G F+  S+   F ++ ++Y++++  L  +R+I     VL  +  N  + +   Y  +
Sbjct: 373 VAIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I       + +KA  V N +            N+++      G   +AL++ D M   G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           +     +   I  FC+ +K+     + +E+   ++ +    V    +I G+CK ++++ A
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 246 FKVLDELRIRECKPDFIAYRIV------------AEEF-KLM------------------ 274
             +L+ ++   C+P+   Y ++            AEE  K+M                  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 275 ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
               GS      +  K  + G  P    Y   I  L  E ++ EA+ L  E+   G    
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPD 669

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL-------------- 375
           +   +  +   + S     A  F   MI+ G  PTL T   L K L              
Sbjct: 670 EITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL 729

Query: 376 ------CKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                 C         +   V+SA     D    ++  N +VS L T+GR  EA  ++  
Sbjct: 730 PDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +GL PD   YNSL+ +  R   +  A  ++  M   GC  +L  Y  LI    ++  
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHR 849

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + A   F NML +   PD      L++GL ++       E  +      +M  R  + +
Sbjct: 850 RKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH------IMETRRYMPS 903

Query: 546 FMI 548
           F I
Sbjct: 904 FHI 906



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + + + G    L   S L  +L +   +  +++ Y  + +     ++  YN +++ LC
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + +A  +++++    + PD   Y S++   CR+  L  A ++++QM   GC  N  
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--- 528
           TY+ LI+   + G +  A  L   M+  G+ P A T T  +  LC     + A+ +F   
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 529 -NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLAD 585
            NK    +V    +++S     LC  G   VA  L   +S D    ++ ++  L+  L +
Sbjct: 347 KNKGCEPNVYTYTALIS----GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402

Query: 586 AREVEMA 592
            R ++ A
Sbjct: 403 NRRIKYA 409



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 68/455 (14%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A G FN          + ++Y +++       +++   S+L+ +K +    +   Y    
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV-- 570

Query: 127 PSLIQGKNTQKAFSVFNEVKFNC-----EDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
             LI G   Q  FS   E+   C     E I P +    +++  L  +G    AL+MF++
Sbjct: 571 --LIHGLTKQNNFSGAEEL---CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  +G   + + +   I    +  K+ +  ++  E+ +  + +I   +  V +I  +   
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER--HGLIPDEITYVKMIEAYIMS 683

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +VE AF  L  +    C+P    Y ++ +  K                        N+Y
Sbjct: 684 GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLK------------------------NEY 719

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
                 L+ ++R+    ++      G  T D D ++ +   ++ +DP  ++   N ++  
Sbjct: 720 ------LLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALV-- 771

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE- 418
                         NL    +  E  E+   + +     D E+YN   S LC+  R+R  
Sbjct: 772 -------------SNLSTAGRWFEANELLGSMISQGLCPDQEAYN---SLLCSLLRVRNV 815

Query: 419 --AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A GV + M  +G +  ++ Y  L+ A C+    + A+  ++ M     + +     +L
Sbjct: 816 DLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVL 875

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           I      G  +  +   H M  +   P    YT L
Sbjct: 876 IDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+++C  ++ +       D +  SG    L  Y+ L+   S +G     +  +H ML +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V P+   Y +++  LC++ N+  A  +  K    ++       ++ ++  CR+     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 561 KLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           ++   ++ +    +  ++  L+  L D+  V  A + I+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 215/443 (48%), Gaps = 9/443 (2%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
           F++ SL++    + ++ VF ++  +C  + P++   ++++    + G +D+A+++F +M 
Sbjct: 167 FLLSSLVKANEVKMSYQVF-DIMCHC-GVTPDVYLFSTMVNAFCTGGRVDDAIELFRKME 224

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGK 240
             GV  + + +   I   C+N +L +     +++ K     +  S++   ++I+G  K +
Sbjct: 225 KVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER---VKPSLVTYGVLINGLVKLE 281

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R +EA  +L E+  R   P+ + Y  + + +  +G++     +       G++P +    
Sbjct: 282 RFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCN 341

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEK 359
             I G     ++  A+ L E +++G   I+     ++I  +       SA++F   M+ +
Sbjct: 342 SLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLR 401

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P    L+ L   LC+  K  E +E++  L    +  +  + N ++  LC +G   EA
Sbjct: 402 NFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEA 461

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +++EM  +GL  D   YN+L+ ACC+E  +    KL ++M   G   ++ TYN+L+  
Sbjct: 462 AKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHG 521

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              +G+IE A  L+H   + G  PDA TY  +++G C+   ++   ++F + V   +   
Sbjct: 522 LCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQN 581

Query: 540 RSILSTFMISLCRRGHFLVATKL 562
             +  T + + C  G+   A +L
Sbjct: 582 AVVYGTLIRAYCENGNMREAFRL 604



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/486 (21%), Positives = 208/486 (42%), Gaps = 7/486 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++I+  L  + +++      ++++  ++      Y  +I  L++ +   +A  +  E
Sbjct: 233 VTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKE 292

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          + N+L+      G I  AL++ D+M   G+  +++     I  +C++ +
Sbjct: 293 MSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQ 352

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +     +L+E+      +  G+  +V  IH  C   R + A   + E+ +R  KP+    
Sbjct: 353 MEHAEHLLEEMLTGGGVINQGTFTSV--IHRLCLKCRFDSALLFIMEMLLRNFKPNDGLL 410

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++       G   E   +  +  + G A  T      I GL       EA +L + ++ 
Sbjct: 411 TLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLE 470

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               +D    N LI                  M+ +G  P + T + L   LC   K +E
Sbjct: 471 RGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEE 530

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              ++     N  F D  +Y +M+   C + R+ E   + QEM    ++ +   Y +L+ 
Sbjct: 531 AGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIR 590

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C    +R A +L D M + G      TY+ LI   S +G ++ A +L   M ++G++P
Sbjct: 591 AYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSP 650

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK-SVNHDVMLARSILSTFMIS-LCRRGHFLVATK 561
           +   YT+L+ G C+   +     +  + S+N+  +    I  T MI+  C+ G+   A K
Sbjct: 651 NVVCYTALIGGYCKLGQMHKVDSILQEMSINN--VHPNKITYTIMINGHCKLGNMKAAAK 708

Query: 562 LLRGLS 567
           LL  ++
Sbjct: 709 LLNEMA 714



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/487 (19%), Positives = 202/487 (41%), Gaps = 3/487 (0%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  ++  L    + +  + +LK++       ++ VY  +I    +  N   A  + 
Sbjct: 266 SLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIR 325

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +++  N        CNSL+        +++A  + +EM   G   +   F   I + C  
Sbjct: 326 DDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +    L  + E+  R     +G  +  L++ G C+  +  EA ++   L  +    + +
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDG--LLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTV 443

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
               +       GS  E   +LK+  + G+   +  Y   IL    E ++ E  +L E +
Sbjct: 444 TSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM 503

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V      D    N L+  + ++     A   ++   + G  P   T   +    CK N+ 
Sbjct: 504 VRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRV 563

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E  ++++ +       +   Y  ++   C +G +REA+ +  +M+ +G+    + Y+SL
Sbjct: 564 EEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSL 623

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +       L+  A +L D+M   G S N+  Y  LI  + ++G++     +   M    V
Sbjct: 624 IHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNV 683

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P+  TYT ++ G C+  N++AA ++ N+     ++      +      C+ G    A K
Sbjct: 684 HPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALK 743

Query: 562 LLRGLSS 568
           +   +S+
Sbjct: 744 VCDLMST 750



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 160/356 (44%), Gaps = 3/356 (0%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L++ L  +G    A++++  +  +G   +T+     I   CE     +   +L E+ +R 
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER- 471

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             ++  S+    +I   CK  +VEE FK+ +E+  R  +PD   Y ++      MG + E
Sbjct: 472 -GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEE 530

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +  + +K G  P    Y   I G     R+ E ++L + +V+ K   +  V   LI 
Sbjct: 531 AGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIR 590

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               + + R A    + M  +G   T +T S+L   L      D   ++   +       
Sbjct: 591 AYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSP 650

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++  Y  ++   C  G++ +   ++QEM    + P+   Y  ++   C+   ++ A KL 
Sbjct: 651 NVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLL 710

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           ++M   G   +  TYN L + F + G++E AL++   M   G++ D  TYT+L++G
Sbjct: 711 NEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 111/225 (49%), Gaps = 2/225 (0%)

Query: 349 AIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +VF  F+ +  KG  P+L T + L  +L K N+     +V+ ++       D+  ++ M
Sbjct: 144 GVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTM 203

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V+  CT GR+ +A  + ++M++ G+ P+V  YN+++   C+   L  A +  ++M     
Sbjct: 204 VNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERV 263

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +L TY +LI+   ++   + A  +   M ++G AP+   Y +L++G C+  N+  A +
Sbjct: 264 KPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQ 323

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           + +  +++ +       ++ +   C+      A  LL  + +  G
Sbjct: 324 IRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGG 368



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLST-----LSNLSKNLCKRNKSDELVEVYKVLS 392
           IGS ++++PR+A  FF+F  E    P ++      L ++     K      + E++ +L+
Sbjct: 96  IGS-NNVNPRTAFNFFHFASETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLA 154

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
               F  +++ N ++S L  +  ++ +Y V   M   G+ PDV  +++++ A C    + 
Sbjct: 155 NKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVD 214

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L+ +M   G + N+ TYN +I    + G ++ A +    M ++ V P   TY  L+
Sbjct: 215 DAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLI 274

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            GL +      A  +  +  +        + +T +   CR G+   A ++   + S+ G 
Sbjct: 275 NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN-GI 333

Query: 573 SDSHVI---LLKSLADAREVEMAIEHI 596
           S + V    L++    + ++E A EH+
Sbjct: 334 SPNSVTCNSLIQGYCKSNQMEHA-EHL 359



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 117/280 (41%), Gaps = 46/280 (16%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFN----------W--ASQQPNFTHSPLSYHSILKSL 94
           L   +V R I P + T++ L  G  N          W    +  NF  +  +Y  ++   
Sbjct: 499 LKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA-YTYGIMIDGY 557

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
             + ++   + + +++   KI  ++ VY  +I +  +  N ++AF + ++++        
Sbjct: 558 CKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTS 617

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
              +SL+  L++ G +D+A ++ DEM   G+  + + +   I  +C+  ++ +V S+L E
Sbjct: 618 ATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQE 677

Query: 215 V--------RKRENSMING-------------------------SVIAVLIIHGFCKGKR 241
           +        +     MING                         +V    + +GFCK  +
Sbjct: 678 MSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGK 737

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +EEA KV D +       D I Y  + + +    +V  RE
Sbjct: 738 MEEALKVCDLMSTGGISLDDITYTTLIDGWHKPLTVSSRE 777


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 223/497 (44%), Gaps = 5/497 (1%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
            FN    + N     + +  IL SL  ++Q     S+ +Q++ N I  D      ++   
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
            Q  + + +FSVF ++              L+  L   G +  AL   D++  +G +   
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKV 248
           + +G  I   C   ++G+  + +  +R+ +  ++  +V+    II   CK K V +AF +
Sbjct: 164 VSYGTLINGLC---RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDL 220

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
             E+  +   PD + Y  +   F ++G +     +  +     + P    +   I G   
Sbjct: 221 YCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCK 280

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLST 367
           E ++ EAK +  V++     +D    N+L+     +     A   FN M ++G  P + +
Sbjct: 281 EGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWS 340

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            S +    CK    DE +++++ +     F ++ +YN +V  LC SGR   A  ++ EM 
Sbjct: 341 YSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMH 400

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
            +G   ++  YNS+++A C+ + +  A  L  ++   G   ++ TY +LI+   +VG ++
Sbjct: 401 DRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLD 460

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A ++F ++L KG +P+  TYTSL+ G C +        + +K  ++  +         +
Sbjct: 461 DAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILI 520

Query: 548 ISLCRRGHFLVATKLLR 564
            SL  +     A KLLR
Sbjct: 521 HSLFEKDENDKAEKLLR 537



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 352 FFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            FN ++ K   +P       +  +L K  +    + + + +  N    D  + N++++  
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G ++ ++ V  ++ +KG  PD   +  L++  C +  +  A    D++ A G   + 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF-- 528
            +Y  LI+    VGE + A++L   +  K V P+   Y+++++ +C++  +  AF+++  
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 529 --NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             +K ++ DV+   S++S F    C  G    A  L   + SD
Sbjct: 224 MVSKRISPDVVTYSSLISGF----CVVGKLKYAVDLFNRMISD 262



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K   + P + F   ++ +  +    + A  L  QM  +G   +  T N+L++ FS++G I
Sbjct: 51  KNNPIPPAIEF-GKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHI 109

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + +  +F  +L+KG  PDA T+T L++GLC +  +  A    +K V     L +    T 
Sbjct: 110 KFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTL 169

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           +  LCR G    A +LLR +   L   +  V++  ++ D+
Sbjct: 170 INGLCRVGETKAAVQLLRRVDGKLVRPN--VVMYSTIIDS 207


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 149/621 (23%), Positives = 255/621 (41%), Gaps = 55/621 (8%)

Query: 14  SQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLS---PSLVARVINPYLLTHHSLALGF 70
           +  + + +N      +W  LL +      LR SL+   P  + +++   L    S+ L  
Sbjct: 59  NDTVFNNTNGLDSGTEWERLL-KPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMEL-- 115

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F WA  Q  + H    Y+ ++  L  + +    D++L Q+K   I    S++  I+    
Sbjct: 116 FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYG 175

Query: 131 QGKNTQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           +     +A  +  +++  ++CE       N +L VL +         +F EM  +G+  +
Sbjct: 176 RAGLPGQATRLLLDMRGVYSCEPTFRSY-NVVLDVLLAGNCPKVVPNVFYEMLSKGISPT 234

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI---------------- 232
              FGV +   C   ++    ++L ++  R   + N  V   LI                
Sbjct: 235 VYTFGVVMKALCLVNEVDSACALLKDM-TRHGCVPNAIVYQTLIHALSKVGRVNEVLKLL 293

Query: 233 ------------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                             IHG CK  R+ EA K++D + +R   P+   Y ++      M
Sbjct: 294 EEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRM 353

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDV 333
           G V E  ++L K       P    +   I G +   R+ EAK  + E ++S     D   
Sbjct: 354 GKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFT 409

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI G        SA    N M  KG  P + T + L    CK  + +E   V   +S
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 469

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +   YN ++S LC   ++++A  +  +M  KG  PD+  +NSL+   C+ +   
Sbjct: 470 GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFE 529

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  L+  M   G   N  TYN LI  F   G ++ AL+L ++ML +G   D  TY  L+
Sbjct: 530 EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 589

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLS 567
           + LC+  N++    +F   ++  +       +  +  LCR G+   A + L     RGL+
Sbjct: 590 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLT 649

Query: 568 SDLGHSDSHVILLKSLADARE 588
            D+   +S +  L     A+E
Sbjct: 650 PDIVTYNSLINGLCKTGRAQE 670



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 193/413 (46%), Gaps = 14/413 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT +  +Y  ++  L    +++    +L +V    + L    +  +I   +      +A 
Sbjct: 336 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEAK 391

Query: 140 SVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +V +E   +    GP+I   N+L+  L   GY+ +A ++ +EM  +G E + I + + I 
Sbjct: 392 AVMHESMLSV-GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 450

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +FC+  +L +  ++LDE+  +  ++   +V    +I   CK ++V++A  +  ++  + C
Sbjct: 451 RFCKEGRLEEARNVLDEMSGKGLAL--NAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 508

Query: 258 KPDFIAYRIVAEEFKLMG-SVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEA 315
           KPD   +  +   F L   + FE  + L +   L GV   T  Y   I   +    + EA
Sbjct: 509 KPDIFTFNSLI--FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 566

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L   ++     +DD   N LI ++  + +    +  F  M+ KG  P   + + L   
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+       +E  + +       D+ +YN +++ LC +GR +EA  +  +++ +G+ PD
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
              YN+L+   C+E +   A  L  +   SG   N  T+ IL+S F + G+ E
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 181/383 (47%), Gaps = 12/383 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ VL+S G +D   ++  EMS  G        G F    C+  +    L M++    
Sbjct: 44  NALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIE---- 99

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           RE+  ++ +V+   +I G  +    +EA   L  +R   C P+ + YR +   F     +
Sbjct: 100 REDFKLD-TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              + ++      G  P  + +   +     E+    A +L   + +        V N  
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 338 IGSVSSID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           IGS+   +  P   ++      +  M+    V     ++N ++ LC   K D+  ++ K 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKE 278

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    +  D  +Y+ +++FLC + ++ +A+ + QEMK  G+ PDV  Y  L+++ C+  L
Sbjct: 279 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGL 338

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+ L+++M + GCS  + TY  LI  + +  ++  A  +FH M++ G  P+  TY +
Sbjct: 339 IEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 511 LLEGLCQETNLQAAFEVFNKSVN 533
           L++GLC+  N+  AFEV+ K + 
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIG 421



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/469 (20%), Positives = 198/469 (42%), Gaps = 25/469 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++L      +Q+     ++  +       + S++  ++ S    K+   A+ + N 
Sbjct: 143 VTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 202

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +       G  + N  +        L S   +D A K++ EM       + +    F   
Sbjct: 203 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 262

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+ ++    +  +     +I   C   +VE+AF +  E+++    
Sbjct: 263 LCGVGKFDKAFQLIKEMMRK--GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 320

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + + + + ++ R +G +P    Y   I   +  +++ +A ++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 380

Query: 319 GEVIVSGKFTIDDDVLNALI------GSVS-----------SIDPRSAIVFFNFMIEKGR 361
              +V      +D    AL+      G++S           + D   +  +F        
Sbjct: 381 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 440

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T   L   LCK +K D   E+   + ++    +   Y+ ++   C +G++  A  
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M + G  P V  Y SL++   ++  L  A K+  QM    C+ N+ TY  +I    
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 560

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +GE E AL+L   M EKG +P+  TYT+L++GL +   +  + ++F +
Sbjct: 561 RIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 609



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/520 (20%), Positives = 211/520 (40%), Gaps = 58/520 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           ++K++       D+S Y  +I  L      +KAF +F E+K     + P++     L+  
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM--VGVTPDVYTYTILIDS 332

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKREN 220
               G I+ A  +F+EM   G   + + +   I  + +  ++ Q   +   + +   R N
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 221 SMINGSVIAVL----------------------------------------------IIH 234
            +  G+++  L                                              ++ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK  +V+ A ++LD +    C+P+ I Y  + + F   G +   + V  +  K G  P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
             + Y   I  +  + R+  A ++   ++    T +     A+I  +  I +   A+   
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M EKG  P + T + L   L K  K D  ++++  +S      +  +Y V+++ LC +
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L +A  ++ EMK+      +  Y   ++   +  +   +  + ++M + G       Y
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFI--ASLGILEEMESYGTVPIAPVY 690

Query: 474 NILISKFSEVGEIEGALRLFHNMLE--KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            +LI  FS+ G +E A+ L   M+E    V  D   Y SL++ LC  + ++ AF ++++ 
Sbjct: 691 GMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
                +   S+    +  L     +  A +L  G+  ++G
Sbjct: 751 TRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVG 790



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/453 (19%), Positives = 175/453 (38%), Gaps = 66/453 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF-- 142
           ++Y +++ +   ++Q+   + +  ++       +   Y  ++  L +  N  KAF V+  
Sbjct: 359 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 143 ---------NEVKFNCED---IGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
                    ++  F CED   + P +    +L+  L     +D+A ++ D M   G E +
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 189 TIGFGVFIWKFCENAKLGQV-------------------LSMLDEVRKR----------- 218
            I +   I  FC+  K+                       S++D + K            
Sbjct: 479 HIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLS 538

Query: 219 ---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              ++S     V    +I G C+    E+A K+L  +  + C P+ + Y  + +     G
Sbjct: 539 QMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAG 598

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVL 334
            +     +  +  + G +P    YR  I  L     + +A+ L GE+    K T     L
Sbjct: 599 KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM----KQTYWPKYL 654

Query: 335 NALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                ++        +++     M   G VP       L     K  + +  +E++K + 
Sbjct: 655 QGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 714

Query: 393 --ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
              +   TD + Y  ++  LC + ++ EA+ +  EM R+G  P++S +  L++       
Sbjct: 715 EVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG------ 768

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           L   KK WD+     C G      +L+S  +++
Sbjct: 769 LVEVKK-WDEALQL-CYGICHEVGLLLSYTTQI 799



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 3/192 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+  T + L + L    + D    V K +S + +  D  +       LC  GR  +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +I+   R+    D      ++           A     +M  + C  N+ TY  L+S 
Sbjct: 95  LDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +  ++    R+ + M+ +G  P+ + + SL+   C E +   A+++ N+         
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211

Query: 540 RSILSTFMISLC 551
             + + F+ S+C
Sbjct: 212 YVVYNIFIGSIC 223


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 36/385 (9%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +   LK+  EM  +G++ +   +   I   C++ K+     +L E+  +   ++  +V
Sbjct: 24  GELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQ--GIVPDTV 81

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +   +I GFCK   ++ A+K+ DE+  +   PDFIAY  V       G + E + V  K 
Sbjct: 82  VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKM 141

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              GV P    Y   I G       C++ E+                             
Sbjct: 142 FSRGVEPDEVTYTTLIDGY------CKSGEM----------------------------E 167

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A    N M++ G  P + T + L+  LCK  + D   E+   +       ++ +YN +V
Sbjct: 168 KAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           + LC SG +R+A  +++EM+  G+ PD   + +LM+A C+   +  A +L  +M   G  
Sbjct: 228 NGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             + T+N+L++ F   G +E   RL   MLEKG+ P+ TTY SL++  C   N++   E+
Sbjct: 288 PTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEI 347

Query: 528 FNKSVNHDVMLARSILSTFMISLCR 552
           +       VM   +  +  +   C+
Sbjct: 348 YKGMCARGVMPDSNTYNILIKGHCK 372



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 177/395 (44%), Gaps = 15/395 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I+G+C G  +++  K++ E++++  KP+   Y  +       G V + E VL++    G
Sbjct: 16  VINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           + P T  Y   I G      I  A +L + +   +   D     A+I G         A 
Sbjct: 76  IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEAD 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             FN M  +G  P   T + L    CK  + ++   ++  +  +    ++ +Y  +   L
Sbjct: 136 KVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGL 195

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G++  A  ++ EM  KGL  ++  YNSL+   C+   +R A KL ++M  +G   + 
Sbjct: 196 CKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDT 255

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+  L+  + + GE+  A  L   ML++G+ P   T+  L+ G C    L+    +   
Sbjct: 256 ITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAW 315

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADARE 588
            +   +M   +  ++ M   C R +    T++ +G+ +   +  S+++ IL+K    AR 
Sbjct: 316 MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARN 375

Query: 589 VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623
           ++ A     W        L +  AE   +L++SSY
Sbjct: 376 MKEA-----WF-------LHKEMAEKGFNLTASSY 398



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 177/396 (44%), Gaps = 7/396 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I     G   QK   +  E++   + + P +   NS++ +L   G +D+A +
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQM--KGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +  EM ++G+   T+ +   I  FC+   +     + DE+ K+   ++   +    +I G
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR--IVPDFIAYTAVICG 124

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C+  ++ EA KV +++  R  +PD + Y  + + +   G + +   +  +  + G+ P 
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              Y     GL    ++  A EL   +      ++    N+L+ G   S + R A+    
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M   G  P   T + L    CK  +  +  E+ + +        + ++NV+++  C SG
Sbjct: 245 EMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L +   ++  M  KG+ P+ + YNSLM+  C  + +R   +++  M A G   +  TYN
Sbjct: 305 MLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYN 364

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           ILI    +   ++ A  L   M EKG    A++Y S
Sbjct: 365 ILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNS 400



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 210/456 (46%), Gaps = 9/456 (1%)

Query: 48  SPSLVA--RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +P +V+   VIN Y L      +       Q      +  +Y+SI+  L  S +++  + 
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAV 163
           VL+++    I  D+ VY  +I    +  N Q A+ +F+E++   + I P+     +++  
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEK--QRIVPDFIAYTAVICG 124

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G +  A K+F++M  RGVE   + +   I  +C++ ++ +  S+ +++   ++ + 
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMV--QSGLT 182

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    +  G CK  +V+ A ++L E+  +  + +   Y  +       G++ +   +
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           +++    G+ P T  +   +        + +A EL   ++           N L+ G   
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S           +M+EKG +P  +T ++L K  C RN      E+YK + A     D  +
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++   C +  ++EA+ + +EM  KG +   S YNS+++   ++  +  A++L+++M 
Sbjct: 363 YNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMR 422

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
             G + + + YN+ +      G +E AL L    +E
Sbjct: 423 REGMAADAEIYNLFVDISYGEGNMETALELCDEAIE 458



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ SY+ +++  C  G L++   +IQEM+ KGL P++  YNS++   C+   +  A+++ 
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M   G   +   Y  LI  F ++G I+ A +LF  M ++ + PD   YT+++ GLC+ 
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
             +  A +VFNK  +  V       +T +   C+ G  
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEM 166



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           MK +G  PDV  Y++++   C    L+   KL  +M   G   NL TYN +I    + G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ A R+   M+ +G+ PD   YT+L++G C+  N+QAA+++F++     ++      + 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 546 FMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIE-HIKWI 599
            +  LCR G  + A K+      RG+  D     ++  L+     + E+E A   H + +
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPD---EVTYTTLIDGYCKSGEMEKAFSLHNQMV 177

Query: 600 Q 600
           Q
Sbjct: 178 Q 178


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 204/444 (45%), Gaps = 29/444 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ VLA+ G +D   ++  EMS  G        G F    C+  +    L M++    
Sbjct: 44  NALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIE---- 99

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           RE+  ++ +V+   +I G  +    +EA   L  +R   C P+ + YR +   F     +
Sbjct: 100 REDFKLD-TVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQL 158

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              + ++    K G  P  + +   +      R    A +L + +            N  
Sbjct: 159 GWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIF 218

Query: 338 IGSVSSID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           IGS+   +  P   ++      +  M+    V      +N ++ LC   K D   ++ KV
Sbjct: 219 IGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKV 278

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    +  D  +Y+ +++FLC + ++ +A+ + QEMK  G++PDV  Y  L+++ C+  L
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGL 338

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+  +D+M + GCS N+ TY  L+  + +  ++  A  +F+ M++ G  P+  TY++
Sbjct: 339 IEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSA 398

Query: 511 LLEGLCQETNLQAAFEVFNKSVN--------------HDVMLARSILS--TFMISLCRRG 554
           L++GLC+   +Q A EV+ K +               H   +A ++++    +  LC+  
Sbjct: 399 LVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAH 458

Query: 555 HFLVATKLLRGLSSDLGHSDSHVI 578
             + A +LL  + S+ G   +H+I
Sbjct: 459 KVVDAQELLDAMLSN-GCEPNHII 481



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 112/521 (21%), Positives = 224/521 (42%), Gaps = 26/521 (4%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQI 100
           L+ S V   +N          +G F+ A Q         F     +Y  ++  L  + ++
Sbjct: 245 LASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKV 304

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
                + +++K   +  D   Y  +I S  +    ++A S F+E++            +L
Sbjct: 305 EKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTAL 364

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV----- 215
           L        +  A  +F+ M   G   +TI +   +   C+  ++ +   +  ++     
Sbjct: 365 LHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSD 424

Query: 216 ---------RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
                     K  +S+    V    +I G CK  +V +A ++LD +    C+P+ I Y  
Sbjct: 425 NVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDA 484

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + F  +G +   + V  +  K G  P  + Y   I  +  +RR+  A ++   +V   
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESS 544

Query: 327 FTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            T +     A+I  +  I + + A+   + M EKG  P + T + L   L K  K D  +
Sbjct: 545 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL 604

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +++  +S      +  +Y V+++  C +G L EA+ ++ EMK+      +  Y S+++  
Sbjct: 605 QLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF 664

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            ++ +   +  L +++ + G       Y +LI  FS+ G +E AL L   M+E   + + 
Sbjct: 665 SKKFI--ASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNI 722

Query: 506 TT---YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           T+   YTSL++ LC  + L+ AFE++++     V+   S+ 
Sbjct: 723 TSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVF 763



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 126/298 (42%), Gaps = 18/298 (6%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I ++L+      G IDNA ++F  MS  G   +   +   I    ++ +L   + +L ++
Sbjct: 481 IYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQM 540

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E+S     V    +I G C+    ++A K+L  +  + C P+ + Y  + +     G
Sbjct: 541 V--ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSG 598

Query: 276 SV-FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE---VIVSGKFTIDD 331
            V    ++ ++   K G AP    YR  I         C A  L E   ++   K T   
Sbjct: 599 KVDLSLQLFIQMSTK-GCAPNYVTYRVLI------NHCCAAGLLDEAHSLLSEMKQTYWP 651

Query: 332 DVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             L      V     +  +++     +   G VP       L  N  K  + +E +E++K
Sbjct: 652 KYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHK 711

Query: 390 V---LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
               LS++   T  + Y  ++  LC + +L +A+ +  E+ RKG+ P++S +  L++ 
Sbjct: 712 EMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKG 769



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 3/192 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+ +T + L + L    + D    V K +S + +  D  +       LC  GR  +A
Sbjct: 35  GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +I+   R+    D      ++       L   A     +M  + C  N+ TY  L++ 
Sbjct: 95  LVMIE---REDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTG 151

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +  ++    R+ + M+++G  P+ + + SL+   C   +   A+++  +  +      
Sbjct: 152 FLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPG 211

Query: 540 RSILSTFMISLC 551
               + F+ S+C
Sbjct: 212 YVAYNIFIGSIC 223



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 15/195 (7%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V  L T+G++   + V +EM   G   D        +A C+E     A  + ++ 
Sbjct: 42  TYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIER- 100

Query: 462 FASGCSGNLKTYNIL----ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
                  + K   +L    IS   E    + A+   H M      P+  TY +LL G  +
Sbjct: 101 ------EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLK 154

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
           +  L     + N  +        S+ ++ + S C    +  A KLL+ + +D G    +V
Sbjct: 155 KKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRM-ADCGCPPGYV 213

Query: 578 ---ILLKSLADAREV 589
              I + S+    E+
Sbjct: 214 AYNIFIGSICGGEEL 228


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/526 (23%), Positives = 231/526 (43%), Gaps = 14/526 (2%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LA+ FF+WA +Q  + H   SY+ +L  L  S        V K +  +  + +   ++ +
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKIL 68

Query: 126 IPSLIQGKNTQKAFSVFNEV-KFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           I    +     +A      + +F+   + P+  I N L+  L  DG  D A+K+F+ M  
Sbjct: 69  IRGNCKAGQAMRALEFLRALDEFS---VAPDVYIFNVLIHGLFKDGNPDQAVKLFENMES 125

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
             V+   + +   I   C++  L +   +L+E+ ++        V    +I+ F +  R+
Sbjct: 126 SRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI 185

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA    ++++     PD +   I+       G V E   +L   +  G  P    Y   
Sbjct: 186 REACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSI 245

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKG 360
           I  L V  ++ EA    E++ +   + D    N L+     + + PR A+     M  + 
Sbjct: 246 IHALCVAGKVVEA---AEILKTMSCSPDLVTFNTLLDGFCKAGMLPR-ALEVLEEMCREN 301

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P + T + L   LC+  +      + + +    Y  D+ +Y  +V  LC SG + EA+
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++EM  +G    V  Y+SL+   CR   +  A+++  +M +      L TYNI++   
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGL 421

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            + G I  A+ L  +++ +G  PD  TY +L++GLC+   ++ A ++ ++  +       
Sbjct: 422 IKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPND 481

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
             L + +  LCR G    A  L+  +S        +V++  SL D 
Sbjct: 482 VTLGSVVFGLCRVGRVDDAWSLVVEMSRK--RHAPNVVVYTSLIDG 525



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 214/472 (45%), Gaps = 53/472 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQV--KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           ++Y++++  L  S  +     +L+++  K  K   D   Y  +I +  +    ++A + F
Sbjct: 133 VTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACA-F 191

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG---------------- 184
            E K     I P++  CN L++ +  DG ++ AL++ D M   G                
Sbjct: 192 RE-KMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALC 250

Query: 185 -----VEFSTI-----------GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
                VE + I            F   +  FC+   L + L +L+E+  REN ++   + 
Sbjct: 251 VAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM-CREN-ILPDVIT 308

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             ++++G C+  +V+ AF +L+E+  +   PD IAY  + +     G + E   ++K+  
Sbjct: 309 YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMS 368

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKE-LGEVI----VSGKFTIDDDVLNALI--GSV 341
             G       Y   + G      + +A+E L E++    V   FT +  VL  LI  GS+
Sbjct: 369 VRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNI-VLGGLIKDGSI 427

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S      A+   + ++ +G VP + T + L   LCK N+  E  ++   +++   F +  
Sbjct: 428 SK-----AVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDV 482

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +   +V  LC  GR+ +A+ ++ EM RK   P+V  Y SL++  C+ D +  A  + D M
Sbjct: 483 TLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAM 542

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
              G + +   Y  LI   S  G +  A+ ++  M+ +G  PD +T  +L E
Sbjct: 543 RGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEE 594



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 155/366 (42%), Gaps = 16/366 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SI+ +L ++ ++     +LK +  +    D   +  ++    +     +A  V  E
Sbjct: 240 ITYNSIIHALCVAGKVVEAAEILKTMSCSP---DLVTFNTLLDGFCKAGMLPRALEVLEE 296

Query: 145 VKFNC-EDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +   C E+I P++    + V  L   G +  A  + +E+  +G     I +   +   C+
Sbjct: 297 M---CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + ++ +   ++ E+  R      G V+   ++ G+C+   V +A ++L E+      P  
Sbjct: 354 SGEIEEAHKLVKEMSVR--GCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPL 411

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y IV       GS+ +   ++      G  P    Y   I GL    R+ EA +L + 
Sbjct: 412 FTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE 471

Query: 322 IVS-GKFTIDDDVLNALIG--SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + S G F  D  + + + G   V  +D   ++V    M  K   P +   ++L   LCK 
Sbjct: 472 MASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE--MSRKRHAPNVVVYTSLIDGLCKS 529

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           ++ D+   V   +       D  +Y  ++  +   GR+ EA  +  EM  +G  PD S  
Sbjct: 530 DRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTS 589

Query: 439 NSLMEA 444
            +L EA
Sbjct: 590 KTLEEA 595


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 229/494 (46%), Gaps = 16/494 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ ++  L  + + +    +L ++    +T D+  +  I+  L +    ++A S+   
Sbjct: 11  FTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAV 70

Query: 145 V-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + + NC    P  C  N+L++ L     +D A  + DE    G     + + +     C+
Sbjct: 71  MAERNCR---PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++ +   ++ E+    N      V    +I G CK  + E+A+++L+ L      PD 
Sbjct: 128 RGRIDEAFELVKEMSG--NGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y I+ +     G + +   +++   K G  P    Y   + GL    R+ EA  + + 
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +VS   T D     +L+ G   S   + A    + +  +G  P +   + L    CK  +
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RG-TPYIDVYNALMDGYCKEGR 302

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE+  V++ ++      ++++YN+++  LC  G++ EA+  ++ M   G  PDV  YN 
Sbjct: 303 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 362

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++   +    + A+++ DQM  +G   +  TYN L+++F +    + A+ +  NM++ G
Sbjct: 363 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 422

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSV-NHDVMLARSILSTFMISLCRRGHFLVA 559
           V PD  TY +L+ GL Q   L  A+E+ ++ + N  V+ A +  +T +  LC+ G    A
Sbjct: 423 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQA 482

Query: 560 TKLLRGLSSDLGHS 573
             L+  ++   GH 
Sbjct: 483 LLLMDHMT---GHG 493



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 221/495 (44%), Gaps = 15/495 (3%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T S ++Y ++++ L  + +++    + K++     T D+  Y  ++    +   T++A  
Sbjct: 217 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 276

Query: 141 VFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           V + ++       P  ++ N+L+     +G +D    +F++M+ RG   +   + + +  
Sbjct: 277 VVDGIRGT-----PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDG 331

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C++ K+ +    L+ +       +   V   +II G  K  + +EA +VLD++      
Sbjct: 332 LCKHGKVDEAFPFLESMHSA--GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIP 389

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + Y  +  +F       +   +LK   K GV P    Y   I GL    R+ +A EL
Sbjct: 390 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 449

Query: 319 -GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             E++ +G         N +I  +      + A++  + M   G      T +     LC
Sbjct: 450 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLC 509

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDV 435
           K  + DE      +LS  D   D  SY  ++  LC + +L  A  + +EM   KGL    
Sbjct: 510 KEGRLDE---ASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITS 566

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             +N L++A  +   L  A  L + M   GCS ++ TYN++I+   ++ +++ A  LF  
Sbjct: 567 HTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDE 626

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M  +G+   + +YT L+ GLC +   + A +V  +  + D  +         ++L  +G 
Sbjct: 627 MAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGR 686

Query: 556 FLVATKLLRGLSSDL 570
              A +LLR +++ +
Sbjct: 687 GEEAAELLRRMTTKM 701



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/557 (20%), Positives = 228/557 (40%), Gaps = 51/557 (9%)

Query: 58  PYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSV 106
           P ++T+  LA G          F    +      +P  ++Y++++  L  + +      +
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS-VFNEVKFNCEDIGPEICN--SLLAV 163
           L+ +  +    D   Y  I+  L +     KA   V   +K  C    P +    +L+  
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCT---PSVITYTALMEG 229

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----- 218
           L   G +D A  +F EM  +      + +   +  +C++++  +   ++D +R       
Sbjct: 230 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV 289

Query: 219 ---------------------ENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELR 253
                                E+    G V  +    +++ G CK  +V+EAF  L+ + 
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 349

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD ++Y I+ +         E   VL +  + G+ P    Y   +     E R  
Sbjct: 350 SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFD 409

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN-L 371
           +A  + + ++      D+   N LI  +S  +    A    + M+  G V +  T  N +
Sbjct: 410 DAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTI 469

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK     + + +   ++ +    +  +YN+ +  LC  GRL EA  ++ EM    L
Sbjct: 470 IDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--L 527

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
             +VS+   ++  C  E L R +K   + +   G      T+N+LI  F++   ++ AL 
Sbjct: 528 RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALT 587

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M+++G +P   TY  ++  LC+   +  A+E+F++     ++ +    +  +  LC
Sbjct: 588 LLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLC 647

Query: 552 RRGHFLVATKLLRGLSS 568
            +G    A ++L  ++S
Sbjct: 648 GQGRGKEALQVLEEMAS 664



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 1/276 (0%)

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           VAP    Y   I GL    +  +A E+   +V    T D    N+++ G   +     A 
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M E+   P+  T + L   LCK+   D    +     ++ +  D+ +Y+++   L
Sbjct: 66  SLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGL 125

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  GR+ EA+ +++EM   G  P++  YN+L++  C+      A +L + + +SG   ++
Sbjct: 126 CKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY I++    + G ++ AL++   ML++G  P   TYT+L+EGLC+   +  A  +F +
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            V+ D         + +   C+      A K++ G+
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI 281



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E+   P + T + L   LCK +K+D+  E+   +       D  ++N ++  LC +G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              A+ ++  M  +   P    YN+L+   C++  +  AK L D+  +SG   ++ TY+I
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L     + G I+ A  L   M   G  P+  TY +L++GLC+ +  + A+E+    V+  
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +      +  +  LC+ G    A K++ G+
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 211



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  + + PDV  YN L++  C+      A ++  +M   G + +  T+N ++    + G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            E A  L   M E+   P   TY +L+ GLC++ N+  A  + ++ V+   +      S 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQESS 603
               LC+RG    A +L++ +S +    +  ++  L+  L  A + E A E ++ +  S 
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 181/383 (47%), Gaps = 12/383 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ VL+S G +D   ++  EMS  G        G F    C+  +    L M++    
Sbjct: 44  NALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIE---- 99

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           RE+  ++ +V+   +I G  +    +EA   L  +R   C P+ + YR +   F     +
Sbjct: 100 REDFKLD-TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              + ++      G  P  + +   +     E+    A +L   + +        V N  
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 338 IGSVSSID--PRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           IGS+   +  P   ++      +  M+    V     ++N ++ LC   K D+  ++ K 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKE 278

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    +  D  +Y+ +++FLC + ++ +A+ + QEMK  G+ PDV  Y  L+++ C+  L
Sbjct: 279 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGL 338

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+ L+++M + GCS  + TY  LI  + +  ++  A  +FH M++ G  P+  TY +
Sbjct: 339 IEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 511 LLEGLCQETNLQAAFEVFNKSVN 533
           L++GLC+  N+  AFEV+ K + 
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIG 421



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/469 (20%), Positives = 198/469 (42%), Gaps = 25/469 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++L      +Q+     ++  +       + S++  ++ S    K+   A+ + N 
Sbjct: 143 VTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 202

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +       G  + N  +        L S   +D A K++ EM       + +    F   
Sbjct: 203 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 262

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+ ++    +  +     +I   C   +VE+AF +  E+++    
Sbjct: 263 LCGVGKFDKAFQLIKEMMRK--GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 320

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + + + + ++ R +G +P    Y   I   +  +++ +A ++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 380

Query: 319 GEVIVSGKFTIDDDVLNALI------GSVS-----------SIDPRSAIVFFNFMIEKGR 361
              +V      +D    AL+      G++S           + D   +  +F        
Sbjct: 381 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 440

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T   L   LCK +K D   E+   + ++    +   Y+ ++   C +G++  A  
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M + G  P V  Y SL++   ++  L  A K+  QM    C+ N+ TY  +I    
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 560

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +GE E AL+L   M EKG +P+  TYT+L++GL +   +  + ++F +
Sbjct: 561 RIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 609



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/519 (19%), Positives = 198/519 (38%), Gaps = 93/519 (17%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           ++K++       D+S Y  +I  L      +KAF +F E+K     + P++     L+  
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM--VGVTPDVYTYTILIDS 332

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKREN 220
               G I+ A  +F+EM   G   + + +   I  + +  ++ Q   +   + +   R N
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 221 SMINGSVIAVL----------------------------------------------IIH 234
            +  G+++  L                                              ++ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK  +V+ A ++LD +    C+P+ I Y  + + F   G +   + V  +  K G  P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
             + Y   I  +  + R+  A ++   ++    T +     A+I  +  I +   A+   
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M EKG  P + T + L   L K  K D  ++++  +S      +  +Y V+++ LC +
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 414 GRLREA---------------------------------YGVIQEMKRKGLDPDVSFYNS 440
           G L +A                                  G+++EM+  G  P    Y  
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGM 692

Query: 441 LMEACCREDLLRPAKKLWDQMF--ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           L++   +   L  A +L  +M    S    +   Y  LI       ++E A RL+  M  
Sbjct: 693 LIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTR 752

Query: 499 KGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVN 533
           +G  P+ + +  L++GL +    +  LQ  + + ++ VN
Sbjct: 753 RGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 791



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 3/192 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+  T + L + L    + D    V K +S + +  D  +       LC  GR  +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +I+   R+    D      ++           A     +M  + C  N+ TY  L+S 
Sbjct: 95  LDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +  ++    R+ + M+ +G  P+ + + SL+   C E +   A+++ N+         
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211

Query: 540 RSILSTFMISLC 551
             + + F+ S+C
Sbjct: 212 YVVYNIFIGSIC 223


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 202/451 (44%), Gaps = 42/451 (9%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +   L S++  +Q ++  S+  Q+ +  +T +      +I  L +  +   A SV 
Sbjct: 95  SVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVM 154

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            ++ F    I P+    N+L+  L ++G I  A+ +F+EM   G E + I +   I   C
Sbjct: 155 GKM-FKL-GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +N   G  +  +   RK E +    +V+    II   CK + V EA + L E+  R   P
Sbjct: 213 KN---GNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  +   F  +G + E   + K+     V P T  +   + GL  E  + EA+ + 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           E                                   M EKG  P   T + L    C  N
Sbjct: 330 ET----------------------------------MTEKGAEPNAYTYNALMDGYCLHN 355

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + DE ++V  ++       ++ SYN++++  C S R+ EA  ++ EM  K L PD   Y+
Sbjct: 356 QMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYS 415

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +LM+  C+    R A  L+ +M +SG   +L  Y+IL+  F + G ++ AL+L   M E+
Sbjct: 416 TLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHER 475

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            + P+   YT L+ G+     L+ A E+F+K
Sbjct: 476 RIKPNIILYTILIRGMFIAGKLEVAKELFSK 506



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/495 (21%), Positives = 220/495 (44%), Gaps = 6/495 (1%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           TH+  S + ++  L     ++   SV+ ++    I  D+  +  +I  L      ++A  
Sbjct: 128 THNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVG 187

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +FNE+ ++  +      N+++  L  +G    A+++F +M     + + + +   I   C
Sbjct: 188 LFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLC 247

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           ++  + + +  L E+  R   +    V    I+HGFC   ++ EA ++  E+  R   PD
Sbjct: 248 KDRLVNEAVEFLSEMVDR--GIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + + I+ +     G V E   V +   + G  P    Y   + G  +  ++ EA ++  
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +++      +    N LI G   S     A    + M EK   P   T S L + LC+  
Sbjct: 366 IMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           +  E + ++K + ++    D+ +Y++++   C  G L EA  +++EM  + + P++  Y 
Sbjct: 426 RPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYT 485

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L+        L  AK+L+ ++ A G   ++ TYN++I    + G  + A   F  M + 
Sbjct: 486 ILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDD 545

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G  PD+ +Y  +++G  Q  +   A ++ ++ V        +  STF + L    H  + 
Sbjct: 546 GFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRF---SADSSTFQMLLDLESHDEII 602

Query: 560 TKLLRGLSSDLGHSD 574
           ++ +RG S     +D
Sbjct: 603 SRFMRGSSQHTKMND 617



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 174/405 (42%), Gaps = 36/405 (8%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
            L  +A      +A+ + ++M   GV  +     V I   C  + +   +S++ ++ K  
Sbjct: 102 FLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKL- 160

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   ++    +I+G C   +++EA  + +E+     +P+ I+Y  V       G+   
Sbjct: 161 -GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIM 219

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              V +K  +    P    Y   I  L  +R + EA E                      
Sbjct: 220 AVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE---------------------- 257

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                       F + M+++G  P + T + +    C   + +E   ++K +   +   D
Sbjct: 258 ------------FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             ++N++V  LC  G + EA  V + M  KG +P+   YN+LM+  C  + +  A K+  
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   GC+ NL +YNILI+ + +   +  A RL   M EK + PD  TY++L++GLCQ  
Sbjct: 366 IMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             + A  +F +  +  ++      S  +   C+ GH   A KLL+
Sbjct: 426 RPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLK 470


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 180/375 (48%), Gaps = 9/375 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR- 216
           N +   L   G +  A ++  +M  RG     I +   I  +C+  +L +VL +++E++ 
Sbjct: 257 NIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQI 316

Query: 217 --KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
              + N      VI +L     CK  +V EA +VL E+      PD + Y  + + F  +
Sbjct: 317 KGLKPNPYTYNGVILLL-----CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G+V     +  + +K  ++P    Y   I GL    R+ EA +L   +V  +   D+   
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
            ALI G       + A    N M++ G  P + T + L+  LCK  + D   E+   +  
Sbjct: 432 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN +V+ LC +G + +A  ++++M+  G  PD   Y +LM+A C+   +  
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L  QM        + T+N+L++ F   G +E   +L   MLEKG+ P+ATTY SL++
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 611

Query: 514 GLCQETNLQAAFEVF 528
             C   N++A  E++
Sbjct: 612 QYCIRNNMRATTEIY 626



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/564 (23%), Positives = 246/564 (43%), Gaps = 36/564 (6%)

Query: 7   TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           ++L  RIS AI     R+ P R+     E            +  L+  ++N  +   + L
Sbjct: 63  SELVHRISIAI--KQRRSEPLRRVLKPYESKFR--------ADHLIWVLMN--IKNDYRL 110

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
            L FF WA          L     L++  +  QI      LK  +  K+  D     ++ 
Sbjct: 111 VLSFFEWAC---------LRRDPSLEARCIVAQIATASKDLKMAR--KLIQDF----WVN 155

Query: 127 PSLIQGKNTQKAFSVFNE-VKFNCEDIG--PEICNSLLAVLASDGYIDNALKMFDEMSHR 183
           P+L  G     +F  F E + +  +D G  P + +    VL   G +D A K+FD+M + 
Sbjct: 156 PNLDVGV----SFGHFVEQLIYTYKDWGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNY 211

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+  S     +FI    E+   G  +++   V   E  +   +    +I H  C+  RV 
Sbjct: 212 GLLISVDSCNLFISHLSEDLD-GIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVV 270

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA ++L ++ +R C PD I+Y  V   +  +G +     ++++ +  G+ P    Y   I
Sbjct: 271 EAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVI 330

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRV 362
           L L    ++ EA+ +   ++S     D  +   LI     + +  SA   F+ M ++   
Sbjct: 331 LLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKIS 390

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + +   LC+  +  E  +++  +       D  +Y  ++   C  G+++EA+ +
Sbjct: 391 PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSL 450

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             +M + GL P++  Y +L +  C+   +  A +L  +M   G   N+ TYN L++   +
Sbjct: 451 HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 510

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G I+ A++L  +M   G  PDA TYT+L++  C+   +  A E+  + ++ ++      
Sbjct: 511 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 570

Query: 543 LSTFMISLCRRGHFLVATKLLRGL 566
            +  M   C  G      KLL+ +
Sbjct: 571 FNVLMNGFCMSGMLEDGEKLLKWM 594



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 175/408 (42%), Gaps = 8/408 (1%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +   LK+ +EM  +G++ +   +   I   C+  K+ +   +L E+      +    V
Sbjct: 302 GELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE--GIAPDGV 359

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           I   +I GFCK   V  A+++ DE++ R+  PDFI Y  V       G V E + +  + 
Sbjct: 360 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 419

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
               + P    Y   I G   E ++ EA  L   ++    T +     AL  G     + 
Sbjct: 420 VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV 479

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +A    + M  KG    + T ++L   LCK    D+ V++ K +    +  D  +Y  +
Sbjct: 480 DTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 539

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C S  +  A+ ++++M  + L P V  +N LM   C   +L   +KL   M   G 
Sbjct: 540 MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 599

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  TYN LI ++     +     ++  M  KGV PD  TY  L++G C+  N++ A+ 
Sbjct: 600 MPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWF 659

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +    V     L  S  +  +    +R  FL A +L       GL +D
Sbjct: 660 LHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVAD 707



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 208/479 (43%), Gaps = 6/479 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD-GYIDNALKM 176
           D  V+      L++     +A  +F+++      I  + CN  ++ L+ D   I  ALK+
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKV 240

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F E    GV ++T  + +     C+  ++ +   +L ++  R    I   +    +I+G+
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELR--GCIPDVISYSTVINGY 298

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   ++   K+++E++I+  KP+   Y  V       G V E E VL++    G+AP  
Sbjct: 299 CQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG 358

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G      +  A  L + +   K + D     A+I G   +     A   F+ 
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ K   P   T + L    CK  K  E   ++  +       ++ +Y  +   LC  G 
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A  ++ EM RKGL+ ++  YNSL+   C+   +  A KL   M  +G   +  TY  
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+  + +  E+  A  L   ML++ + P   T+  L+ G C    L+   ++    +   
Sbjct: 539 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 598

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
           +M   +  ++ +   C R +    T++ RG+ +   +   +++ IL+K    AR ++ A
Sbjct: 599 IMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 198/462 (42%), Gaps = 3/462 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ I  SL    ++     +L Q+++     D   Y  +I    Q    Q+   +  E+
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEM 314

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +       P   N ++ +L   G +  A ++  EM   G+    + +   I  FC+   +
Sbjct: 315 QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNV 374

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                + DE++KR+ S     +    +I G C+  RV EA K+  E+  +  +PD + Y 
Sbjct: 375 SSAYRLFDEMQKRKIS--PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + +   G + E   +  +  ++G+ P    Y     GL     +  A EL   +   
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 492

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
              ++    N+L+ G   + +   A+     M   G  P   T + L    CK  +    
Sbjct: 493 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRA 552

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+ + +   +    + ++NV+++  C SG L +   +++ M  KG+ P+ + YNSL++ 
Sbjct: 553 HELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 612

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C  + +R   +++  M A G   +  TYNILI    +   ++ A  L  +M+ KG    
Sbjct: 613 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLT 672

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
            ++Y +L++G  +      A E+F +     ++  R I + F
Sbjct: 673 VSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 191/434 (44%), Gaps = 11/434 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN    P +Y+ ++  L  + ++   + VL+++    I  D  +Y  +I    +  N  
Sbjct: 320 KPN----PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 375

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A+ +F+E++     I P+     +++  L   G +  A K+F EM  + +E   + +  
Sbjct: 376 SAYRLFDEMQK--RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 433

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  +C+  K+ +  S+ +++ +    +    V    +  G CK   V+ A ++L E+  
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQM--GLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  + +   Y  +       G++ +   ++K     G  P    Y   +      R +  
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A EL   ++  +        N L+ G   S           +M+EKG +P  +T ++L K
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 611

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C RN      E+Y+ + A     D  +YN+++   C +  ++EA+ + ++M  KG + 
Sbjct: 612 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 671

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
            VS YN+L++   +      A++L++QM   G   + + YNI      + G++E  L L 
Sbjct: 672 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELC 731

Query: 494 HNMLEKGVAPDATT 507
              +EK +  D  T
Sbjct: 732 DEAIEKCLVGDIQT 745



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 123/244 (50%), Gaps = 8/244 (3%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G +P + + S +    C+  +   ++++ + +       +  +YN ++  LC +G++ E
Sbjct: 282 RGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAE 341

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  V++EM  +G+ PD   Y +L++  C+   +  A +L+D+M     S +  TY  +I 
Sbjct: 342 AERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVIC 401

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              + G +  A +LFH M+ K + PD  TYT+L++G C+E  ++ AF + N+ +   +  
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP 461

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
                +     LC+ G    A +LL     +GL  ++   +S   L+  L  A  ++ A+
Sbjct: 462 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS---LVNGLCKAGNIDQAV 518

Query: 594 EHIK 597
           + +K
Sbjct: 519 KLMK 522



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/452 (20%), Positives = 190/452 (42%), Gaps = 9/452 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++       ++  +  +++++++  +  +   Y  +I  L +     +A  V  E
Sbjct: 289 ISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLRE 348

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    E I P+  I  +L+      G + +A ++FDEM  R +    I +   I   C+ 
Sbjct: 349 MI--SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT 406

Query: 203 AKLGQVLSMLDE-VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            ++ +   +  E V KR   +    V    +I G+CK  +++EAF + +++      P+ 
Sbjct: 407 GRVMEADKLFHEMVCKR---LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNI 463

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  +A+     G V     +L +  + G+      Y   + GL     I +A +L + 
Sbjct: 464 VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD 523

Query: 322 IVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +    F  D      L+ +   S +   A      M+++   PT+ T + L    C    
Sbjct: 524 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 583

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            ++  ++ K +       +  +YN ++   C    +R    + + M  KG+ PD + YN 
Sbjct: 584 LEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNI 643

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++  C+   ++ A  L   M   G +  + +YN LI  F +  +   A  LF  M  +G
Sbjct: 644 LIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 703

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           +  D   Y    +    E  ++   E+ ++++
Sbjct: 704 LVADREIYNIFADINYDEGKMELTLELCDEAI 735


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 190/420 (45%), Gaps = 19/420 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
           Y  +I  L +  NT  A  +   + + NC+   P++    S++  L  D  +  A  +F 
Sbjct: 175 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQ---PDVVVYTSIIDSLCKDRQVTEAFNLFS 231

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS-----VIAVLII 233
           +M  +G+      +   I   C   +   V ++L       N MIN       VI   ++
Sbjct: 232 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLL-------NQMINSKIMPDVVIFSTVV 284

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
              CK  ++ EA  V+D + IR  +P+ + Y  + +   L   + E   V       G A
Sbjct: 285 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 344

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G    +R+ +A  L E +   +   +    N L+  +  +   + AI  
Sbjct: 345 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIAL 404

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M+  G++P L+T   L   LCK++  DE + + K +  ++   D++ Y +++  +C 
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 464

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G L  A  +   +  KGL P+V  Y  ++   CR  LL  A KL+ +M  +GCS +  T
Sbjct: 465 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCT 524

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN +     +  E   A++L   ML +G + D +T T L+E LC +   Q+  ++ ++ V
Sbjct: 525 YNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 584



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/536 (22%), Positives = 221/536 (41%), Gaps = 65/536 (12%)

Query: 58  PYL--LTH---HSLALGFFNWASQQPNFT-----HSPLS---YHSILKSLSLSRQINAID 104
           PY   L+H   HS +L F        +F      H P S   ++ +L S++ ++Q   + 
Sbjct: 28  PYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVF 87

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICN--SLL 161
           S+  Q+    I  D      +I S         AFSV  ++ K   +   P+     +L+
Sbjct: 88  SLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQ---PDTATFTTLI 144

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L  +G I +AL +FD+M   G + + + +G  I   C   K+G   + +  +R  E  
Sbjct: 145 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC---KVGNTNAAIRLLRSMEQG 201

Query: 222 MINGSVIAVL-IIHGFCKGKRVEEAFKV-------------------------------- 248
                V+    II   CK ++V EAF +                                
Sbjct: 202 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHV 261

Query: 249 ---LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              L+++   +  PD + +  V +     G + E   V+      GV P    Y   + G
Sbjct: 262 TTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDG 321

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPT 364
             ++  + EA ++ + +V   +  +    N LI     I     A   F  M +K  +P 
Sbjct: 322 HCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 381

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T + L   LC   +  + + ++  + A+    D+ +Y +++ +LC    L EA  +++
Sbjct: 382 TVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLK 441

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            ++   +DPD+  Y  +++  CR   L  A+ ++  + + G   N++TY I+I+     G
Sbjct: 442 TIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 501

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            ++ A +LF  M   G +PD  TY ++ +GL Q      A ++  +      MLAR
Sbjct: 502 LLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE------MLAR 551



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 194/427 (45%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     ST+ F   +    +  +   V S+ +++   ++  I   V  
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQM---DSFGIPPDVYT 104

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC   R   AF VL ++     +PD   +  +     + G + +   +  K  
Sbjct: 105 LNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 164

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   I GL        A  L   +  G    D  V  ++I S+       
Sbjct: 165 GEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 224

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ M+ +G  P + T ++L  +LC   +   +  +   +  +    D+  ++ +V
Sbjct: 225 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVV 284

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G++ EA+ V+  M  +G++P+V  YN+LM+  C +  +  A K++D M  +G +
Sbjct: 285 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 344

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  ++ A  LF  M +K + P+  TY +L+ GLC    LQ A  +
Sbjct: 345 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIAL 404

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V H  +   +     +  LC++ H   A  LL+ +       D  +  I++  +  
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 464

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 465 AGELEAA 471



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 170/412 (41%), Gaps = 3/412 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  +A          + ++M   G+        + I  FC   + G   S+L ++ K
Sbjct: 71  NRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILK 130

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +   +     +I G C   ++ +A  + D++     +P+ + Y  +      +G+ 
Sbjct: 131 L--GLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 188

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L+   +    P    Y   I  L  +R++ EA  L   +V    + D     +L
Sbjct: 189 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 248

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+ ++ + +      N MI    +P +   S +   LCK  K  E  +V  ++     
Sbjct: 249 IHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGV 308

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YN ++   C    + EA  V   M   G  P+V  YN+L+   C+   +  A  
Sbjct: 309 EPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATY 368

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++M       N  TYN L+     VG ++ A+ LFH M+  G  PD  TY  LL+ LC
Sbjct: 369 LFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 428

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           ++++L  A  +       ++     I +  +  +CR G    A  +   LSS
Sbjct: 429 KKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSS 480



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           VLS   YF+ + S+N   S       L +A      M      P    +N L+ +  +  
Sbjct: 23  VLSLPPYFSSL-SHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTK 81

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
                  L +QM + G   ++ T NILI+ F  +     A  +   +L+ G+ PD  T+T
Sbjct: 82  QYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFT 141

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L+ GLC E  +  A  +F+K +            T +  LC+ G+   A +LLR  S +
Sbjct: 142 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR--SME 199

Query: 570 LGHSDSHVILLKSLADA 586
            G+    V++  S+ D+
Sbjct: 200 QGNCQPDVVVYTSIIDS 216


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 222/503 (44%), Gaps = 20/503 (3%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
            P    S   + + ++ L+ +  ++ +   L+++++  +          I +  +  +  
Sbjct: 44  DPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSAD 103

Query: 137 KAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +A   F       C D G  + N LL  L  +  +   + ++D M   GV+ +   + + 
Sbjct: 104 RALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLL 163

Query: 196 IWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           I   C+N ++     MLDE+ ++    + + +G++++     G CK  RVEEA   L E 
Sbjct: 164 IRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVS-----GMCKLGRVEEARGFLAET 218

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
              +   + + + +  E F+ M  VF    V+ +  + G+ P    Y   +      R +
Sbjct: 219 VPVQASYNAVVHALCGE-FR-MWEVFS---VVNEMVQRGLQPNVVTYTTIVDAFCKAREL 273

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
             A  +   +VS   T +     AL+ G         A+  +++M+++G  P+  + + L
Sbjct: 274 RMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVL 333

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            + LC        ++ +  +  N    +  +Y+ +V     +G L  A  +  EMK  G 
Sbjct: 334 IRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGC 393

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+V  Y ++++  C++ +   A+ L D+M    C  N  T+N LI +  + G +  AL 
Sbjct: 394 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALN 453

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           +FH M   G  P+  TY  LL GL +E N + AF +  + +N+   L+    +T +  LC
Sbjct: 454 VFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLC 513

Query: 552 R---RGH--FLVATKLLRGLSSD 569
           +   R H   L+   +++G+  D
Sbjct: 514 QMCMRKHAMLLLGRMMVQGIQPD 536



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 179/434 (41%), Gaps = 44/434 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE- 144
           SY++++ +L    ++  + SV+ ++    +  +   Y  I+ +  + +  + A ++    
Sbjct: 224 SYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARM 283

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           V   C    P +    +L+     DG + +AL M+  M   G   STI + V I   C  
Sbjct: 284 VSMGCT---PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCI 340

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L   L   + +++  N+++  +     ++ GF     ++ A  + +E++   CKP+ +
Sbjct: 341 GDLKGALDFFNSMKR--NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVV 398

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +         + E ++ K       P T  +   I       R+C+   +G   
Sbjct: 399 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLI------GRLCDCGRVGR-- 450

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR-NKS 381
                                     A+  F+ M   G  P   T + L   L +  N  
Sbjct: 451 --------------------------ALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHK 484

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D    V ++L+ N +   + +YN +++ LC     + A  ++  M  +G+ PD   +N++
Sbjct: 485 DAFAMVIEMLN-NGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAI 543

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + A C+E  +  A  L  QM A  C  N+  Y ILIS+    G++  A+     ML +G+
Sbjct: 544 IHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGI 603

Query: 502 APDATTYTSLLEGL 515
            P+  T+  L+  +
Sbjct: 604 CPNEATWNVLVRAI 617


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 227/523 (43%), Gaps = 21/523 (4%)

Query: 66  LALGFFNWASQQ-PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           L L F    S   PNF HS LS     H +++   LS     I  ++++  V+++ +  S
Sbjct: 116 LGLKFIGLVSYHFPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVES 175

Query: 121 -------------VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
                        +Y  ++ + +Q K  ++    F  ++     +    CN LL  L   
Sbjct: 176 LISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRT 235

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G++D A +++ E+   G+E +     + +   C++ K   V+  L ++  +   +    V
Sbjct: 236 GWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK--GVFADIV 293

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I+ +C+   VEEAF++L+    R  +P  + Y  +      +G     + VL + 
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDP 346
            +LG+ P    Y   ++ +     I EA+E+ + +       D    ++LIG ++ +   
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A++ F  M   G VP     + L    C+     + +++   + A   F D+ +YN  
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC      +A  +  EM  +G+ PD   + +L+   C++  +  A  L++ M  +  
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TYN LI  F + GE+  A  L+ +M+ K + PD  +Y ++L G C    L  A  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           + ++ +   +       +T +   CR G    A + L  + S+
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 188/415 (45%), Gaps = 17/415 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+     +G ++ A ++ +  S RG+E   + +   ++  C+  K  +   +L E+ +
Sbjct: 296 NTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ 355

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                 N +    L++   C+   + EA ++ DE+  R   PD +++  +       G +
Sbjct: 356 L-GLTPNAATYNTLLVE-ICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF---TIDDDV 333
           ++  +  ++  + G+ P    Y   I G      + +A ++  E++  G F      +  
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L       D   A + FN M+E+G VP   T + L +  CK    D+ + +++ +  
Sbjct: 474 LNGLCKKKMFAD---ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR 530

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
            +   D  +YN ++   C +G +  A  +  +M RK + PD   Y +++   C   LL  
Sbjct: 531 TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPE 590

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L DQM   G   NL T N LI  +   G++  A      M+  G+ PD+ +Y +L++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650

Query: 514 GLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           G  +E NL+ AF + N    + +  +++    IL+ F    C  G    A ++LR
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF----CAEGKMQEAEQVLR 701



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 9/387 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL  +     I  A ++FDEMS RGV    + F   I     N  L Q L    E+ +
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + ++  +VI  ++I GFC+   + +A K+ DE+  R C  D + Y             
Sbjct: 426 --SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMF 483

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            + +++  +  + G+ P    +   I G   +  + +A  L E +V      D    N L
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   + +   A   ++ MI K  +P   +   +    C      E + +   +     
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ + N ++   C SG + +AY  + +M   G+ PD   YN+L++   +E  L  A  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M   G   N+ TYN++++ F   G+++ A ++   M+E G+ PD  TY+SL+ G  
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHV 723

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSIL 543
            + N++ AF        HD ML R ++
Sbjct: 724 SQDNMKEAFRF------HDEMLQRGLV 744



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 195/424 (45%), Gaps = 9/424 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+Y++IL  L    + +    VL ++    +T +++ Y  ++  + +  N  +A  +F+E
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +   + P++ +  SL+ VLA +G++  AL  F EM   G+    + + + I  FC N
Sbjct: 388 M--SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L   L M DE+  R   M    V     ++G CK K   +A  + +E+  R   PDF 
Sbjct: 446 GALSDALKMRDEMLARGCFM--DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  +   +   G++ +   + +   +  + P    Y   I G      +  AKEL + +
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 323 VSGKFTIDDDVL--NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +  K  I D +     L G  SS     A+   + M+EKG  P L T + L K  C+   
Sbjct: 564 IR-KDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             +  E    + +N    D  SYN ++        L +A+ +I EM+++GL  ++  YN 
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++   C E  ++ A+++  +M   G + +  TY+ LI+       ++ A R    ML++G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 501 VAPD 504
           + PD
Sbjct: 743 LVPD 746



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 116/257 (45%), Gaps = 12/257 (4%)

Query: 78  PNFTHSPLSYHSILKSLSLSRQINAIDSVLK-QVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           P+F           K  ++ + +N  +++++  +K +K+T     Y  +I    +     
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT-----YNTLIDGFCKAGEMG 554

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +++++    +DI P+  +  ++L    S G +  AL + D+M  +G+  + +    
Sbjct: 555 RAKELWDDMIR--KDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  +C +  + +    L ++    N +I  S     +I G+ K   +E+AF +++E+  
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMI--SNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R  + + I Y ++   F   G + E E VL+K  ++G+ P    Y   I G + +  + E
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 315 AKELGEVIVSGKFTIDD 331
           A    + ++      DD
Sbjct: 731 AFRFHDEMLQRGLVPDD 747


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 209/434 (48%), Gaps = 6/434 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I   ++  ++ +AF V  E+      +     N+L+  +   G ++ A  + +EM 
Sbjct: 344 YTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMI 403

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             G++  T  +   I  + +     +V  +L E++K  ++++  +    +II+G C+   
Sbjct: 404 MVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKK--SNLVPTAYTCGMIINGLCRHGS 461

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +E+A +V + +     KP+ + Y  + +     G   E   +LK   K GV P    Y  
Sbjct: 462 IEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNS 521

Query: 302 FILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
            I+GL   R++ EAK+ L E+I  G    +     ALI G   S + + A  +F  M+  
Sbjct: 522 VIIGLCKSRKMEEAKDYLVEMIERG-LKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGC 580

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P     + L    CK   + E   +++ +       D+ +Y+ ++  L  +G+L+ A
Sbjct: 581 GIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA 640

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++ E   KGL PDV  YNS++   C++  +  A +L + M   G S N+ TYN LI+ 
Sbjct: 641 MELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALING 700

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + GEIE A  LF  +  KG+A +A TY ++++G C+  NL  AF +F++     V   
Sbjct: 701 LCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP-P 759

Query: 540 RSILSTFMISLCRR 553
            S + + +I  CR+
Sbjct: 760 DSFVYSALIDGCRK 773



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 131/606 (21%), Positives = 240/606 (39%), Gaps = 54/606 (8%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           + W  LL        + + LSP +V  VI   +     L L FFNW   Q  F+    S+
Sbjct: 52  KNWESLLPL------VSNKLSPDVVHSVITKQVNDPKRL-LDFFNWVQFQMGFSQKLQSF 104

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT------------ 135
             +   L  SR  +  DSV+ Q+    I + S  Y  I+ SLI+                
Sbjct: 105 SILALILCNSRLFSRADSVVNQM----IMMSSGGYSEILDSLIKSCKEFDLNNVNGNENS 160

Query: 136 ----------------------QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
                                  +A S F   K N   +G   CN LL+ L     ++  
Sbjct: 161 NNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELF 220

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKF--CENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            + ++ M    V      +   I       NAK G+ L    E +    S++  +V+   
Sbjct: 221 WRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVV--- 277

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
            I G C+   V+EAF++   +  +    D   Y I+ + F       E +++L++    G
Sbjct: 278 -IGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG 336

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
           + P    Y   I G + +    EA  + E +++    ++    NAL+  V    D   A 
Sbjct: 337 LKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKAD 396

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              N MI  G  P   T +N+ +   K   +  + ++   +  ++      +  ++++ L
Sbjct: 397 ALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGL 456

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G + +A  V + M   G+ P+   Y +L++   +E   + A ++   M   G   ++
Sbjct: 457 CRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDV 516

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN +I    +  ++E A      M+E+G+ P+  TY +L+ G C+   +Q A   F +
Sbjct: 517 LCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKE 576

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
            +   +     + +  +   C+ G    AT + R +     H D  ++  L+  L    +
Sbjct: 577 MLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGK 636

Query: 589 VEMAIE 594
           ++ A+E
Sbjct: 637 LQGAME 642



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 116/531 (21%), Positives = 207/531 (38%), Gaps = 53/531 (9%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            L Y+S++  L  SR++      L ++    +  +   Y  +I    +    Q A   F E
Sbjct: 517  LCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKE 576

Query: 145  VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +   C  I P   +C +L+     +G    A  +F  M  R V      +   I     N
Sbjct: 577  M-LGC-GIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRN 634

Query: 203  AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             KL   + +L E    E  ++        II GFCK   + +AF++              
Sbjct: 635  GKLQGAMELLSEFL--EKGLVPDVFTYNSIISGFCKQGGIGKAFQL-------------- 678

Query: 263  AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
                              E + +K    G++P    Y   I GL     I  A+EL + I
Sbjct: 679  -----------------HEYMCQK----GISPNIITYNALINGLCKAGEIERARELFDGI 717

Query: 323  VSGKFTIDDDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
              GK    + V  A I  G   S +   A   F+ M  KG  P     S L     K   
Sbjct: 718  -PGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGN 776

Query: 381  SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +++ + ++ + S    F    S N ++   C SG++ EA  ++++M  K + PD   Y  
Sbjct: 777  TEKALSLF-LESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTI 835

Query: 441  LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
            L++  C+   L+ A++ +  M       N  TY  L+S ++  G       LF  M+ K 
Sbjct: 836  LIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKD 895

Query: 501  VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
            + PD  T++ +++   +E +     ++ +  +     +++++    +  LCR+ H     
Sbjct: 896  IEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVL 955

Query: 561  KLL-----RGLSSDLGHSDSHVILLK---SLADAREVEMAIEHIKWIQESS 603
            K+L     +GL+  L    + V        +  A  V  ++   KW+ +S+
Sbjct: 956  KVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDST 1006



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 176/398 (44%), Gaps = 8/398 (2%)

Query: 118  DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALK 175
            D   Y  +I  L++    Q A  + +E  F  + + P++   NS+++     G I  A +
Sbjct: 620  DVRTYSALIHGLLRNGKLQGAMELLSE--FLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 176  MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            + + M  +G+  + I +   I   C+  ++ +   + D +  +   + + +V    II G
Sbjct: 678  LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK--GLAHNAVTYATIIDG 735

Query: 236  FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            +CK   + +AF++ DE+ ++   PD   Y  + +  +  G+  +   +  +  + G A  
Sbjct: 736  YCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAS- 794

Query: 296  TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFN 354
            T+     + G     ++ EA +L E +V      D      LI         + A  FF 
Sbjct: 795  TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV 854

Query: 355  FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
             M ++  +P   T + L        +  E+  ++  + A D   D  +++VM+      G
Sbjct: 855  DMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEG 914

Query: 415  RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
               +   ++ +M +KG +   +  + L++  CR++ +    K+ +++   G + +L T +
Sbjct: 915  DHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCS 974

Query: 475  ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
             L+  F + G+++GA R+  +M+     PD+T    L+
Sbjct: 975  TLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/454 (18%), Positives = 179/454 (39%), Gaps = 59/454 (12%)

Query: 6    ATDLATRISQAIISASNRTRP-ARKWTPLLEQTLHQLGLRDSLS--PSLVARVINPYLLT 62
            +T  AT I + ++  S    P  R ++ L+   L    L+ ++      + + + P + T
Sbjct: 601  STTEATSIFRCMLGRS--VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFT 658

Query: 63   HHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVK 111
            ++S+  GF                 Q   + + ++Y++++  L  + +I     +   + 
Sbjct: 659  YNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIP 718

Query: 112  VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGY 169
               +  ++  Y  II    +  N  KAF +F+E+    + + P+  + ++L+     +G 
Sbjct: 719  GKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTL--KGVPPDSFVYSALIDGCRKEGN 776

Query: 170  IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
             + AL +F E   +G              F   + L  ++                    
Sbjct: 777  TEKALSLFLESVQKG--------------FASTSSLNALMD------------------- 803

Query: 230  VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                 GFCK  +V EA ++L+++  +  KPD + Y I+ +     G + E E      +K
Sbjct: 804  -----GFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 290  LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRS 348
              + P    Y   + G  +  R  E   L + +++     D    + +I + +   D   
Sbjct: 859  RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVK 918

Query: 349  AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
             +   + M++KG   + +    L   LC++    E+++V + +        + + + +V 
Sbjct: 919  TLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVR 978

Query: 409  FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                +G++  A  V++ M R    PD +  N L+
Sbjct: 979  CFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 220/480 (45%), Gaps = 53/480 (11%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVK---VNKITLDSS--------- 120
            S  PNF HS  S+ +++  L  SR++ +A   +L+ V+   V+++ +  S         
Sbjct: 122 TSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCG 181

Query: 121 ----VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
               V+  ++ + +Q +  ++    F  +K     +    CNSLL  L   G++D A ++
Sbjct: 182 SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEI 241

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           + E+   GV+ +     + I   C+N K+    S L ++   E  +    V    +I+ +
Sbjct: 242 YQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM--EEKGVFPDVVTYNTLINAY 299

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   +EEAF+++D +  +  KP    Y  +       G     + VL +  K+G++P T
Sbjct: 300 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 359

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y      L+VE   C                +D++++A          R     F+ M
Sbjct: 360 ATYNI----LLVE--CCR---------------NDNMMDA---------ER----IFDEM 385

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
             +G VP L + S L   L K    D+ ++ ++ +       D   Y +++   C +G +
Sbjct: 386 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 445

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  V  EM  +G   DV  YN+++   C+E +L  A +L+ +M   G   +  T+  L
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+ +S+ G +  A+ LF  M+++ + PD  TY +L++G C+ + ++   E++N  ++  +
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 9/387 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL     +  + +A ++FDEM  +GV    + F   I    +N  L Q L    +++ 
Sbjct: 363 NILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKN 422

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +   +VI  ++I GFC+   + EA KV DE+  + C  D + Y  +         +
Sbjct: 423 A--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML 480

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + +  +  + GV P    +   I G   +  + +A  L E+++      D    N L
Sbjct: 481 SEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 540

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     +       +N MI +   P   +   L    C      E   ++  +    +
Sbjct: 541 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 600

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + + N +V   C +G   +A   +  M  KG+ PD   YN+L+    +E+ +  A  
Sbjct: 601 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 660

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M  SG   ++ TYN++++ FS  G ++ A  +   M+E+GV PD +TYTSL+ G  
Sbjct: 661 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 720

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSIL 543
            + NL+ AF V      HD ML R  +
Sbjct: 721 TQNNLKEAFRV------HDEMLQRGFV 741



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 195/427 (45%), Gaps = 15/427 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+  L  + +      VL ++    ++ D++ Y  ++    +  N   A  +F+E
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 384

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P++ +  +L+ +L+ +G +D ALK F +M + G+    + + + I  FC N
Sbjct: 385 MP--SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 442

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECK 258
             + + L + DE+ ++      G V+ V+    I++G CK K + EA ++  E+  R   
Sbjct: 443 GVMSEALKVRDEMLEQ------GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 496

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PDF  +  +   +   G++ +   + +   +  + P    Y   I G      + +  EL
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              ++S +   +      LI    ++   S A   ++ M+EKG   T+ T + + K  C+
Sbjct: 557 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 616

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
              + +  E    +       D  +YN +++       +  A+ ++ +M+  GL PDV  
Sbjct: 617 AGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVIT 676

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN ++    R+  ++ A+ +  +M   G + +  TY  LI+       ++ A R+   ML
Sbjct: 677 YNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 736

Query: 498 EKGVAPD 504
           ++G  PD
Sbjct: 737 QRGFVPD 743



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 24/321 (7%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VLK K   G+    N     + GL+    +  A E+ + +V     ++   LN +I ++ 
Sbjct: 209 VLKSK---GLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC 265

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                 +   F + M EKG  P + T + L    C++   +E  E+   +S       + 
Sbjct: 266 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVF 325

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +++ LC +G+   A GV+ EM + G+ PD + YN L+  CCR D +  A++++D+M
Sbjct: 326 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 385

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            + G   +L +++ LI   S+ G ++ AL+ F +M   G+APD   YT L+ G C+   +
Sbjct: 386 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 445

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCR----------------RG---HFLVATKL 562
             A +V ++ +    +L     +T +  LC+                RG    F   T L
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 563 LRGLSSDLGHSDSHVILLKSL 583
           + G S D G+ +  V L + +
Sbjct: 506 INGYSKD-GNMNKAVTLFEMM 525



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 1/246 (0%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
           R++ E  E   V+ S    +  +  N+L+G +  +     A   +  ++  G    + TL
Sbjct: 198 RKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 257

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   LCK  K +        +     F D+ +YN +++  C  G L EA+ ++  M  
Sbjct: 258 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 317

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KGL P V  YN+++   C+      AK + D+M   G S +  TYNIL+ +      +  
Sbjct: 318 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 377

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A R+F  M  +GV PD  ++++L+  L +   L  A + F    N  +     I +  + 
Sbjct: 378 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 437

Query: 549 SLCRRG 554
             CR G
Sbjct: 438 GFCRNG 443



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R     F  +  KG   +++  ++L   L K    D   E+Y+ +  +    ++ + N+M
Sbjct: 201 REGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIM 260

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC + ++      + +M+ KG+ PDV  YN+L+ A CR+ LL  A +L D M   G 
Sbjct: 261 INALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 320

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + TYN +I+   + G+   A  +   ML+ G++PD  TY  LL   C+  N+  A  
Sbjct: 321 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 380

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
           +F++  +  V+      S  +  L + G    A K  R +  + G +  +VI
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM-KNAGLAPDNVI 431



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           ++++V     + +LRE     + +K KGL   ++  NSL+    +   +  A +++ ++ 
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            SG   N+ T NI+I+   +  +IE       +M EKGV PD  TY +L+   C++  L+
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSD 569
            AFE+ +      +       +  +  LC+ G +L A  +L      G+S D
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 358



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L +   +  K  E  E ++VL +      + + N ++  L   G +  A+ + QE+ R G
Sbjct: 190 LVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSG 249

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  +V   N ++ A C+   +   K     M   G   ++ TYN LI+ +   G +E A 
Sbjct: 250 VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAF 309

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L  +M  KG+ P   TY +++ GLC+      A  V ++ +   +    +  +  ++  
Sbjct: 310 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 369

Query: 551 CRRGHFLVATKLLRGLSS 568
           CR  + + A ++   + S
Sbjct: 370 CRNDNMMDAERIFDEMPS 387



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 121/282 (42%), Gaps = 37/282 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++IL  L   + ++  D +  ++    +  D   +  +I    +  N  KA ++F E
Sbjct: 465 VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF-E 523

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     ++ P++   N+L+        ++   +++++M  R +  + I +G+ I  +C  
Sbjct: 524 MMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING-------------------------SVIA 229
             + +   + DE+ ++         N+++ G                          +  
Sbjct: 583 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 642

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I+GF K + ++ AF +++++      PD I Y ++   F   G + E E+++ K  +
Sbjct: 643 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 702

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            GV P  + Y   I G + +  + EA  + + ++   F  DD
Sbjct: 703 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 744


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 210/452 (46%), Gaps = 9/452 (1%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           FN    Q N T S + +  IL SL  +   + + S+ +Q++ N I  +      +I    
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           Q  +   +FSVF+ +     +       +L+  L   G I  AL   D++   G + + +
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVL 249
            +   I   C   K+GQ  + L+ +R+ +  ++   V+    II G CK K V +AF   
Sbjct: 176 SYRTLINGLC---KVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFY 232

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            E+  +   P  + Y  +     +MG + +   +L K     + P    +   +     E
Sbjct: 233 SEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKE 292

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLS 366
            ++ EAK +  V++      +    N+L+     V+ ++   +I  FN M + G  P + 
Sbjct: 293 GKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESI--FNTMAQIGVAPDVH 350

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           + S +    CK    DE +++++ +     F D+ +YN ++  LC SGR+  A  +I EM
Sbjct: 351 SYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEM 410

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             +G  P++  YNSL++A C+   +  A +L  ++       ++ TYNILI+   + G +
Sbjct: 411 HDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRL 470

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           + A ++F ++L  G   D  TY ++++G C++
Sbjct: 471 KDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKK 502



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 188/400 (47%), Gaps = 8/400 (2%)

Query: 61  LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           L H+SL+   F+   ++  +    ++  +++K L L   I+       +V      L+  
Sbjct: 117 LGHNSLSFSVFSNILKK-GYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            YR +I  L +   T+ A  +   +      +   + N+++  +  D  +++A   + EM
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKG 239
             + +  + + +   I   C   +L   + +L ++   EN  IN +V    +++  FCK 
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI-LEN--INPTVYTFSILVDAFCKE 292

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +V+EA  V   +  ++ KP+ + Y  +   + L+  V + E +     ++GVAP  + Y
Sbjct: 293 GKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSY 352

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I G    + + EA +L E +   +   D    N+LI G   S     A+     M +
Sbjct: 353 SIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHD 412

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G+ P + T ++L   LCK +  D+ +E+   L  ++    + +YN++++ LC SGRL++
Sbjct: 413 RGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKD 472

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           A  V +++   G + DV  YN++++  C++  + P  + W
Sbjct: 473 AQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIP--QFW 510



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 101/215 (46%), Gaps = 1/215 (0%)

Query: 353 FNFMI-EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FN ++ +K   P++     +  +L K N    +V +++ +  N   +++ + +++++   
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G    ++ V   + +KG +PD     +L++  C +  +  A    D++ A G   N  
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           +Y  LI+   +VG+ + AL +   +  K V  D   Y ++++G+C++  +  AF+ +++ 
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           V   +       +T +  LC  G    A  LL  +
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKM 270



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           + +K   P +  +  ++ +  + +       L  QM  +G + NL T +ILI+ FS++G 
Sbjct: 60  LHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGH 119

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
              +  +F N+L+KG  PDA T T+L++GLC + ++  A    +K +     L +    T
Sbjct: 120 NSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRT 179

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            +  LC+ G    A ++LR +   L   D  V++  ++ D 
Sbjct: 180 LINGLCKVGQTKAALEMLRRIDGKLVRLD--VVMYNTIIDG 218


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 218/484 (45%), Gaps = 41/484 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE- 144
           ++  +LKS     ++     + +Q+  N I+ D   Y  +I    +     +A  ++ E 
Sbjct: 10  TFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEM 69

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           V    E   P I   NSLL     +  +  A+++F  M+ +G E   + +   I   C+ 
Sbjct: 70  VSVGLE---PSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKT 126

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+ + L ML   +  E      +V    +I+G CK + +E A+K+L+E+  +   PD I
Sbjct: 127 GKVTEALEMLFH-KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +      MG V E +         G +P    Y   +  L  E +  EA +L    
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL---- 241

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                                         F  +I KG +P   T +++   L +++  D
Sbjct: 242 ------------------------------FKDVIAKGYMPDTVTYNSILLGLARKSNMD 271

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  E++K + A+    +  +Y++++S  C + ++ +A+ V++EM + G  PDV  YN L+
Sbjct: 272 EAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 331

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  C+ +L+  A +L+  M  +GC+ ++ +Y+++++   +  ++  A  LF  M+E+ + 
Sbjct: 332 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLV 391

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           PD  T+  L++GLC+   L  A ++ ++             +T M  L ++G  + A +L
Sbjct: 392 PDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRL 451

Query: 563 LRGL 566
            + +
Sbjct: 452 TQAM 455



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           +REC P+   +R+V + F   G + +   + ++    G++P   +Y   I G   + R+ 
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           EA  L E +VS          N+L+ +       + A+  F  M EKG  P + T S + 
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 373 KNLCKRNKSDELVEV--YKVL----SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             LCK  K  E +E+  +K++    SAN       +YN +++ LC    +  AY +++EM
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIERGCSANTV-----AYNALINGLCKDENIERAYKLLEEM 175

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             KG  PD   YN+++   CR   +  AK+ +D M + G S ++  YN L+    + G+ 
Sbjct: 176 ASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKT 235

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A++LF +++ KG  PD  TY S+L GL +++N+  A E+F K V        +  S  
Sbjct: 236 DEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIV 295

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIE 594
           +   CR      A K+L  +S      D  ++ ILL  L     V+ A E
Sbjct: 296 LSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 345


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 210/451 (46%), Gaps = 11/451 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + +  IL SL  ++    +  + ++++++ I  +      +I S    +    AFSVF +
Sbjct: 50  IKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAK 109

Query: 145 V-KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + K   +   P+I    +L+  L  +G +  +L   D +  +G++   + +G  I   C 
Sbjct: 110 ILKLGYQ---PDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLC- 165

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             K+GQ    L  +RK E  +    V+    II G CK K V +AF +  E+  +   P+
Sbjct: 166 --KIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPN 223

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  +   F ++G + +   +L +     V P    +   + GL  E ++ EAK L  
Sbjct: 224 VVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVA 283

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           V++      D    NAL+ G     +   A   FN M + G    + + S +   L K  
Sbjct: 284 VMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMK 343

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE +++++ +   +   D+ +Y+ ++  LC SGR+  A   + EM  +G  P+V  Y 
Sbjct: 344 MLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYT 403

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SL++A C+   +  A  L  ++   G   N+ TYNIL+    + G +  A ++F ++L K
Sbjct: 404 SLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMK 463

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           G   D  TY+ ++ GLC+E+    A  + +K
Sbjct: 464 GHNVDVVTYSIMINGLCKESLFDEALTLLSK 494



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  FN M+     P +     +  +L K      ++ +++ +  +   ++  + N++++
Sbjct: 33  AIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILIN 92

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   ++  A+ V  ++ + G  PD+  Y +L+   C    ++ +    D++ + G   
Sbjct: 93  SYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKL 152

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF--- 525
           +  +Y  LI+   ++G+   ALRL   +  +   PD   Y ++++GLC++  ++ AF   
Sbjct: 153 DHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLY 212

Query: 526 -EVFNKSVNHDVMLARSILSTFMI 548
            E+F K V  +V+   S++  F I
Sbjct: 213 CEMFEKRVFPNVVTYTSLIYGFCI 236


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 218/480 (45%), Gaps = 53/480 (11%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVK---VNKITLDSS--------- 120
            S  PNF HS  S+ +++  L  SR++ +A   +L+ V+   V+++ +  S         
Sbjct: 226 TSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCG 285

Query: 121 ----VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
               V+  ++ + +Q +  ++    F  +K     +    CNSLL  L   G++D A ++
Sbjct: 286 SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEI 345

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           + E+   GV+ +     + I   C+N K+    S L ++   E  +    V    +I+ +
Sbjct: 346 YQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM--EEKGVFPDVVTYNTLINAY 403

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   +EEAF+++D +  +  KP    Y  +       G     + VL +  K+G++P T
Sbjct: 404 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y      L+VE   C                +D++++A                F+ M
Sbjct: 464 ATYNI----LLVE--CCR---------------NDNMMDAE-------------RIFDEM 489

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
             +G VP L + S L   L K    D+ ++ ++ +       D   Y +++   C +G +
Sbjct: 490 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  V  EM  +G   DV  YN+++   C+E +L  A +L+ +M   G   +  T+  L
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+ + + G +  A+ LF  M+++ + PD  TY +L++G C+ + ++   E++N  ++  +
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 9/387 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL     +  + +A ++FDEM  +GV    + F   I    +N  L Q L    +++ 
Sbjct: 467 NILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKN 526

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +   +VI  ++I GFC+   + EA KV DE+  + C  D + Y  +         +
Sbjct: 527 A--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKML 584

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + +  +  + GV P    +   I G   +  + +A  L E+++      D    N L
Sbjct: 585 SEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 644

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     +       +N MI +   P   +   L    C      E   ++  +    +
Sbjct: 645 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 704

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + + N +V   C +G   +A   +  M  KG+ PD   YN+L+    +E+ +  A  
Sbjct: 705 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 764

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M  SG   ++ TYN++++ FS  G ++ A  +   M+E+GV PD +TYTSL+ G  
Sbjct: 765 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 824

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSIL 543
            + NL+ AF V      HD ML R  +
Sbjct: 825 TQNNLKEAFRV------HDEMLQRGFV 845



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 192/423 (45%), Gaps = 7/423 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+  L  + +      VL ++    ++ D++ Y  ++    +  N   A  +F+E
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 488

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P++ +  +L+ +L+ +G +D ALK F +M + G+    + + + I  FC N
Sbjct: 489 MP--SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 546

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             + + L + DE+ ++   +    V    I++G CK K + EA ++  E+  R   PDF 
Sbjct: 547 GVMSEALKVRDEMLEQGCXL--DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 604

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  +   +   G++ +   + +   +  + P    Y   I G      + +  EL   +
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +S +   +      LI    ++   S A   ++ M+EKG   T+ T + + K  C+   +
Sbjct: 665 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 724

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            +  E    +       D  +YN +++       +  A+ ++ +M+  GL PDV  YN +
Sbjct: 725 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 784

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +    R+  ++ A+ +  +M   G + +  TY  LI+       ++ A R+   ML++G 
Sbjct: 785 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 844

Query: 502 APD 504
            PD
Sbjct: 845 VPD 847



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 134/271 (49%), Gaps = 4/271 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VLK K   G+    N     + GL+    +  A E+ + +V     ++   LN +I ++ 
Sbjct: 313 VLKSK---GLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC 369

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                 +   F + M EKG  P + T + L    C++   +E  E+   +S       + 
Sbjct: 370 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVF 429

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +++ LC +G+   A GV+ EM + G+ PD + YN L+  CCR D +  A++++D+M
Sbjct: 430 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 489

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            + G   +L +++ LI   S+ G ++ AL+ F +M   G+APD   YT L+ G C+   +
Sbjct: 490 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             A +V ++ +     L     +T +  LC+
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 1/246 (0%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
           R++ E  E   V+ S    +  +  N+L+G +  +     A   +  ++  G    + TL
Sbjct: 302 RKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 361

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   LCK  K +        +     F D+ +YN +++  C  G L EA+ ++  M  
Sbjct: 362 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 421

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KGL P V  YN+++   C+      AK + D+M   G S +  TYNIL+ +      +  
Sbjct: 422 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 481

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A R+F  M  +GV PD  ++++L+  L +   L  A + F    N  +     I +  + 
Sbjct: 482 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 541

Query: 549 SLCRRG 554
             CR G
Sbjct: 542 GFCRNG 547



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 5/228 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R     F  +  KG   +++  ++L   L K    D   E+Y+ +  +    ++ + N+M
Sbjct: 305 REGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIM 364

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC + ++      + +M+ KG+ PDV  YN+L+ A CR+ LL  A +L D M   G 
Sbjct: 365 INALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 424

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + TYN +I+   + G+   A  +   ML+ G++PD  TY  LL   C+  N+  A  
Sbjct: 425 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 484

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSD 569
           +F++  +  V+      S  +  L + G    A K  R     GL+ D
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 532



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           ++++V     + +LRE     + +K KGL   ++  NSL+    +   +  A +++ ++ 
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            SG   N+ T NI+I+   +  +IE       +M EKGV PD  TY +L+   C++  L+
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSD 569
            AFE+ +      +       +  +  LC+ G +L A  +L      G+S D
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 462



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L +   +  K  E  E ++VL +      + + N ++  L   G +  A+ + QE+ R G
Sbjct: 294 LVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSG 353

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  +V   N ++ A C+   +   K     M   G   ++ TYN LI+ +   G +E A 
Sbjct: 354 VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAF 413

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L  +M  KG+ P   TY +++ GLC+      A  V ++ +   +    +  +  ++  
Sbjct: 414 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 473

Query: 551 CRRGHFLVATKLLRGLSS 568
           CR  + + A ++   + S
Sbjct: 474 CRNDNMMDAERIFDEMPS 491



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 121/282 (42%), Gaps = 37/282 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++IL  L   + ++  D +  ++    +  D   +  +I    +  N  KA ++F E
Sbjct: 569 VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLF-E 627

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     ++ P++   N+L+        ++   +++++M  R +  + I +G+ I  +C  
Sbjct: 628 MMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 686

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING-------------------------SVIA 229
             + +   + DE+ ++         N+++ G                          +  
Sbjct: 687 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 746

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I+GF K + ++ AF +++++      PD I Y ++   F   G + E E+++ K  +
Sbjct: 747 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 806

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            GV P  + Y   I G + +  + EA  + + ++   F  DD
Sbjct: 807 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 848


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 218/504 (43%), Gaps = 29/504 (5%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++  L    ++  +  VL++++   +  D   Y  +I    +  + +KAF +   + 
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMV 421

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N         N+LL    S   ID+AL+++  M  RGV  + I     +    +  K  
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTE 481

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           Q L++  E   R   +    +    +I+G CK  R+ EA ++LD ++   C PD + YR 
Sbjct: 482 QALNLWKETLAR--GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRT 539

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + +  +G +     ++ K   LG AP    +  FI G  + ++  +  ++   + +  
Sbjct: 540 LFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARG 599

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE-- 383
            + +     ALI G     +   A   +  M+  G  P +   S L     K  K DE  
Sbjct: 600 LSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEAN 659

Query: 384 ------------------LVEVYKVLSANDYFTDMES------YNVMVSFLCTSGRLREA 419
                              +E+ K+    D   D         +NV++  LC SGR+ +A
Sbjct: 660 LVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADA 719

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + + ++ K   PD   Y+SL+  C     +  A  L D M ++G + N+ TYN LI  
Sbjct: 720 KSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYG 779

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + G++  A+ LF+ +  KG++P+  TY +L++  C+E     AF++  K V   +   
Sbjct: 780 LCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 839

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               S  +  LC +G+   A KLL
Sbjct: 840 VITYSILIYGLCTQGYMEEAIKLL 863



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 190/386 (49%), Gaps = 10/386 (2%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G+ ++A ++ + +  +G+  + + + + +  +C++ ++ +   ++ E+++  + +++  V
Sbjct: 267 GWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVD-EV 325

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              ++I+G+C+  R+++A +V +E+R      +   Y  +      +G + E + VL++ 
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG---SVSSI 344
             +G+ P    Y   I G   E  + +A E+  ++V           N L+    S+ +I
Sbjct: 386 EDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAI 445

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A+  +  M+++G  P   + S L   L K  K+++ + ++K   A     ++ ++N
Sbjct: 446 D--DALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFN 503

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++ LC  GR+ EA  ++  MK     PD   Y +L +  C+   L  A  L ++M   
Sbjct: 504 TVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL 563

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G + +++ +N  I+      +      +   M  +G++P+  TY +L+ G C+E NL  A
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 525 ----FEVFNKSVNHDVMLARSILSTF 546
               FE+ N  +N +V +  +++S F
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCF 649



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 12/410 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL   A  G + +AL +FD M   G   S       + K  ++   G    +  ++R   
Sbjct: 154 LLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIA- 212

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             ++       ++   +C+  RV +A + ++E+     + + +AY  V + +  MG   +
Sbjct: 213 -GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTED 271

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALI 338
              +L+  ++ G++P    Y   + G   + R+ EA+ +  E+  +G   +D+     +I
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G         A    N M + G    L   + +   LCK  + +E+ +V + +      
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMR 391

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  SYN ++   C  G +R+A+ + + M R GL      YN+L++  C    +  A +L
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           W  M   G + N  + + L+    + G+ E AL L+   L +G+A +  T+ +++ GLC+
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 518 ETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              +  A E+ ++        D +  R++   +    C+ G    AT L+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGY----CKLGQLGTATHLM 557



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 181/428 (42%), Gaps = 71/428 (16%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C++LL  L   G  + AL ++ E   RG+  + I F   I   C+  ++ +   +LD  R
Sbjct: 467 CSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLD--R 524

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD------FIAYRIVAEE 270
            +E      S+    +  G+CK  ++  A  +++++      P       FI    +A++
Sbjct: 525 MKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQ 584

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS------ 324
           +  +  +        +    G++P    Y   I G   E  + EA  L   +V+      
Sbjct: 585 WHKVNDIHS------EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPN 638

Query: 325 --------------GKF----------------------TIDDDVLNALIGSVSSIDPRS 348
                         GK                       TI+ D ++ ++ +++  +P S
Sbjct: 639 VFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHS 698

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V +N +I                 LCK  +  +   +++ L    +  D  +Y+ ++ 
Sbjct: 699 ANVMWNVII---------------FGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
               SG + EA+ +   M   GL P++  YNSL+   C+   L  A  L++++ + G S 
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP 803

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  TYN LI ++ + G+   A +L   M+E+G+ P   TY+ L+ GLC +  ++ A ++ 
Sbjct: 804 NGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLL 863

Query: 529 NKSVNHDV 536
           ++ + ++V
Sbjct: 864 DQMIENNV 871



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 110/225 (48%), Gaps = 1/225 (0%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V S DP  A + +  M   G +P   T++ ++K  C+  +  + VE  + +       ++
Sbjct: 194 VQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNL 253

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+ ++   C  G   +A  +++ ++RKGL P+V  Y  L++  C++  +  A+++  +
Sbjct: 254 VAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313

Query: 461 MFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           M  +G    +   Y ++I+ + + G ++ A R+ + M + G+  +   Y +++ GLC+  
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLG 373

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            ++   +V  +  +  +   +   +T +   CR G    A ++ R
Sbjct: 374 RMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 8/179 (4%)

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           ++ L+ A      L  A  ++D M   GC  +L++ N L++K  + G+   A  ++  M 
Sbjct: 151 FDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR 210

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             GV PD  T   + +  C++  +  A E   +     + +        M   C  G   
Sbjct: 211 IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTE 270

Query: 558 VATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
            A ++L     +GLS ++    ++ +L+K       +E A   +K ++E+   ++ E++
Sbjct: 271 DARRILESLQRKGLSPNV---VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVA 326


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 189/386 (48%), Gaps = 11/386 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  L   G +  A  +  +M+ RG     + +GV +  +C   +L +VL ++DE++
Sbjct: 245 CNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELK 304

Query: 217 KR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            +    +  I  ++I +L     CK   V EA ++L  +R     PD + Y  V   F  
Sbjct: 305 GKGLKPDEYIYNNIILLL-----CKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCK 359

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDD 332
           +G+V     +  + R+  + P    Y   I G+    ++ EA+E+  E++V G    D+ 
Sbjct: 360 LGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG-LEPDEV 418

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
              ALI G   + + + A    N M++KG  P + T + L+  LCK  + D   E+   +
Sbjct: 419 TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM 478

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           S      ++ +YN +V+ LC  G + +   +++EM   G  PD   Y +LM+A C+   +
Sbjct: 479 SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEM 538

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +L   M        L T+N+L++ F   G +E   RL   MLEKG+ P+ATT+ SL
Sbjct: 539 AKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSL 598

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVM 537
           ++  C + N++A  E++    +  VM
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVM 624



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 227/514 (44%), Gaps = 25/514 (4%)

Query: 47  LSPS-LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
             PS L+  +IN  L   + L L  FNWA  Q     S   +H  L+SL +   ++   +
Sbjct: 77  FKPSHLIWVLIN--LKNDYPLVLNLFNWAKSQ-----SQQQFHPTLESLCIVVHLSVASN 129

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIG--PEICNSLLA 162
            ++  K         V+ F     I   +  K+F +F E+  +  +D G  P + +    
Sbjct: 130 DIQTAK-------RLVFEFCAKPKI---DVSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQ 179

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF-CENAKLGQVLSMLDEVRKRENS 221
           VL  +G++  A K+F ++   GV  S     +F+ +  C    +   + + +E    E  
Sbjct: 180 VLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFP--ELG 237

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V   +++H  C+  +V EA  +L ++  R   PD ++Y +V   +  +G + +  
Sbjct: 238 VCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVL 297

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            ++ + +  G+ P    Y   IL L     + EA++L   +       D+ V   +I   
Sbjct: 298 KLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGF 357

Query: 342 SSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             +   SA    F+ M  K  VP + T +++   +CK  K  E  E++  +       D 
Sbjct: 358 CKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDE 417

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y  ++   C +G ++EA+ V  +M +KGL P+V  Y +L +  C+   +  A +L  +
Sbjct: 418 VTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHE 477

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   N+ TYN +++   ++G IE  ++L   M   G  PD  TYT+L++  C+   
Sbjct: 478 MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGE 537

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +  A E+    +N  +       +  M   C  G
Sbjct: 538 MAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSG 571



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 185/416 (44%), Gaps = 3/416 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I N+++ +L  +G +  A ++   M   GV    + +   I  FC+   +     + DE+
Sbjct: 314 IYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEM 373

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R+++  ++   V    +IHG CK  ++ EA ++ +E+ ++  +PD + Y  + + +   G
Sbjct: 374 RRKK--IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAG 431

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E   V  +  + G+ P    Y     GL     I  A EL   +       +    N
Sbjct: 432 EMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYN 491

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            ++  +  I +    +     M   G  P   T + L    CK  +  +  E+ +++   
Sbjct: 492 TIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNK 551

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                + ++NV+++  C SG L +   +I+ M  KG+ P+ + +NSLM+  C ++ +R  
Sbjct: 552 RLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRAT 611

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +++  M   G   +  TYNILI    +   ++ A  L   M+EKG +  A TY +L+ G
Sbjct: 612 TEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRG 671

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
             +      A ++F +   H ++  + I   F+      G++ +  +L     ++L
Sbjct: 672 FYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMTEL 727


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 180/366 (49%), Gaps = 15/366 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L S G    AL++  +M       + + +   I  FC   ++   L ++ E+R+
Sbjct: 158 NIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRE 213

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIV----AEEFK 272
           R     N       +I G+CK  RV+EA KV DE+  + E KP+ + Y  +     ++ K
Sbjct: 214 RGGIAPNQYTYGT-VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 272

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L  ++  R+ ++++    GVA     Y   +  L ++ R  EA EL E +      +D  
Sbjct: 273 LDTALLYRDRMVER----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVF 328

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G     + + A+  F  M  +G   T+ T ++L   L K+ +  E  +++   
Sbjct: 329 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YN +++   TSG +  A+ ++ EM++K + PD   YN+LM   C    +
Sbjct: 389 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 448

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+KL D+M   G   +L TYN LIS +S  G+++ ALR+ + M+ KG  P   TY +L
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 508

Query: 512 LEGLCQ 517
           ++GLC+
Sbjct: 509 IQGLCK 514



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 164/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F +M    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQM-PRPNAVTYNTVIA--- 193

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A  ++ E+R R                                   G+
Sbjct: 194 --GFCSRGRVQAALDIMREMRERG----------------------------------GI 217

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           AP    Y   I G     R+ EA K   E++  G+   +  + NALIG       +D  +
Sbjct: 218 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--T 275

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+++ + M+E+G   T++T                                   YN++V 
Sbjct: 276 ALLYRDRMVERGVAMTVAT-----------------------------------YNLLVH 300

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   GR  EAY +++EM  KGL  DV  YN L+   C+E  ++ A ++++ M   G   
Sbjct: 301 ALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 360

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TY  LI   S+ G+++   +LF   + +G+ PD   Y +L+       N+  AFE+ 
Sbjct: 361 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 420

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M  LC  G    A KL+     RG+  DL
Sbjct: 421 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDL 467



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 46/297 (15%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L  DG    A ++ +EM  +G+      + + I   C+   + + L + + + +
Sbjct: 296 NLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSR 355

Query: 218 RENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    +  +V+    +I+   K  +V+E  K+ DE   R  +PD + Y  +       G+
Sbjct: 356 RG---VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 412

Query: 277 V---FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +   FE    ++KKR   +AP    Y   + GL +  R+ EA++L + +       D   
Sbjct: 413 IDRAFEIMGEMEKKR---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVT 469

Query: 334 LNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI   S   D + A+   N M+ KG  PTL T                         
Sbjct: 470 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT------------------------- 504

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
                     YN ++  LC +G+  +A  +++EM   G+ PD S Y SL+E    ED
Sbjct: 505 ----------YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 551



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 112/263 (42%), Gaps = 2/263 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++ +L +  +      +++++    + LD   Y  +I    +  N +KA  +F  +
Sbjct: 294 TYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENM 353

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                        SL+  L+  G +    K+FDE   RG+    + +   I     +  +
Sbjct: 354 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 413

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+ K+   +    V    ++ G C   RV+EA K++DE+  R  +PD + Y 
Sbjct: 414 DRAFEIMGEMEKKR--IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   + + G V +   +  +    G  P    Y   I GL    +  +A+ + + +V  
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 326 KFTIDDDVLNALIGSVSSIDPRS 348
             T DD    +LI  +++ D R+
Sbjct: 532 GITPDDSTYISLIEGLTTEDERA 554


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 205/452 (45%), Gaps = 9/452 (1%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +   L S++  +Q + + S+  Q+ +  +T +      +I  L +  +   A SV 
Sbjct: 91  SVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVL 150

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            ++ F    I P+    N+L+     +G I  A+ +F+EM  RG +   I +   I   C
Sbjct: 151 GKM-FKL-GIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLC 208

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           ++      L +L   RK E      +++A   II   CK   V +A  +L E+  R   P
Sbjct: 209 KSGNTSMALQLL---RKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPP 265

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  +   F  +G + E  ++  +     V P T  +   + GL  E  + EA+ + 
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E +       +    NAL+ G   +     A    + M++KG  P + + + L    CKR
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + DE   +   +S  +   D  +Y+ ++  LC  GR +EA  + +EM   GL PD+  Y
Sbjct: 386 RRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTY 445

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           ++L++  C+   L  A KL   M  S    ++  YNILI      G++E A  LF  +  
Sbjct: 446 STLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFA 505

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            G+ P   TYT +++GL +E     A+E+F K
Sbjct: 506 DGIQPTIRTYTIMIKGLLKEGLSDEAYELFRK 537



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 208/458 (45%), Gaps = 13/458 (2%)

Query: 81  THSPLSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           TH+  S + ++  L  L+  + AI  + K  K+  I  D+  +  +I         ++A 
Sbjct: 124 THNVYSLNILINCLCRLNHVVFAISVLGKMFKLG-IQPDAITFNTLINGRCIEGEIKEAV 182

Query: 140 SVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            +FNE+        P++ +  +++  L   G    AL++  +M  +G + + + +   I 
Sbjct: 183 GLFNEMVRRGHQ--PDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIID 240

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             C++  +   + +L E+  R   +    V    I+HGFC    + EA  + +E+  R  
Sbjct: 241 SLCKDTLVNDAMDLLSEMVDR--GIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNV 298

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+ + + I+ +     G V E   V +   K G  P    Y   + G  +  ++ EA++
Sbjct: 299 MPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQK 358

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           + +++V           N LI        +D   +++    M EK   P   T S L + 
Sbjct: 359 VLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVE--MSEKELTPDTVTYSTLMQG 416

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+  +  E + ++K + ++    D+ +Y+ ++  LC  G L EA  +++ M+   ++PD
Sbjct: 417 LCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD 476

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  YN L+E       L  AK+L+ ++FA G    ++TY I+I    + G  + A  LF 
Sbjct: 477 IVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            M + G  P++ +Y  +++G  Q  +   A  + ++ V
Sbjct: 537 KMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 196/437 (44%), Gaps = 23/437 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID+AL  F  M       S + FG F+    +  +   V+S+ +++   +   +  +V +
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQM---DLFGVTHNVYS 129

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+  C+   V  A  VL ++     +PD I +  +     + G + E   +  +  
Sbjct: 130 LNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV 189

Query: 289 KLGVAPRTNDYREFILGLIVER---------RICEAKELGEVIVSGKFTIDDDVLNALIG 339
           + G  P    Y   I GL             R  E K     +V+    ID    + L+ 
Sbjct: 190 RRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV- 248

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                    A+   + M+++G  P + T S +    C     +E   ++  +   +   +
Sbjct: 249 -------NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             ++ ++V  LC  G + EA  V + M +KG +P+   YN+LM+  C  + +  A+K+ D
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   GC+  + +YNILI+ + +   ++ A  L   M EK + PD  TY++L++GLCQ  
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS--HV 577
             Q A  +F +  +  ++      ST +  LC+ GH   A KLL+ +       D   + 
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481

Query: 578 ILLKSLADAREVEMAIE 594
           IL++ +  A ++E+A E
Sbjct: 482 ILIEGMFIAGKLEVAKE 498



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 182/397 (45%), Gaps = 11/397 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMF 177
           Y  +I  L +  NT  A  +  ++    E+ G  P +    +++  L  D  +++A+ + 
Sbjct: 200 YSTVINGLCKSGNTSMALQLLRKM----EEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLL 255

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM  RG+    + +   +  FC    L +   + +E+  R N M N +V   +++ G C
Sbjct: 256 SEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGR-NVMPN-TVTFTILVDGLC 313

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   V EA  V + +  +  +P+   Y  + + + L   + E + VL      G AP  +
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFM 356
            Y   I G    RR+ EAK L   +   + T D    + L+  +  +  P+ A+  F  M
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
              G +P L T S L   LCK    DE +++ K +  +    D+  YN+++  +  +G+L
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKL 493

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A  +  ++   G+ P +  Y  +++   +E L   A +L+ +M   G   N  +YN++
Sbjct: 494 EVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVI 553

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           I  F +  +   A+RL   M+ K  + D++T+  LL+
Sbjct: 554 IQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 168/383 (43%), Gaps = 21/383 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++Y +I+ SL     +N    +L ++    I  D   Y  I+       +  
Sbjct: 229 KPNL----VAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLN 284

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +FNE+     ++ P      + V  L  +G +  A  +F+ M+ +G E +   +  
Sbjct: 285 EATILFNEMV--GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-----LIIHGFCKGKRVEEAFKVL 249
            +  +C N ++       DE +K  + M++     V     ++I+G+CK +R++EA  +L
Sbjct: 343 LMDGYCLNNQM-------DEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLL 395

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            E+  +E  PD + Y  + +    +G   E   + K+    G+ P    Y   + GL   
Sbjct: 396 VEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKH 455

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             + EA +L + +   K   D  + N LI G   +     A   F+ +   G  PT+ T 
Sbjct: 456 GHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTY 515

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + + K L K   SDE  E+++ +  + +  +  SYNV++     +     A  +I EM  
Sbjct: 516 TIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVG 575

Query: 429 KGLDPDVSFYNSLMEACCREDLL 451
           K    D S +  L++   R++++
Sbjct: 576 KRFSADSSTFQMLLDLESRDEII 598


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 229/502 (45%), Gaps = 24/502 (4%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI 103
           R+ L+ S+V  V+    +    L + FF WA +Q  + H+   Y ++ + L         
Sbjct: 96  REFLTDSVVVAVLGA--VRSPELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTA 153

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NS 159
           + +L+++  +    D  V   ++  L++    Q  +    E     +D G  P     N+
Sbjct: 154 ERLLREIGED----DRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNA 209

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+ VLAS G ++ A ++  EMS  G        G F    C+  + G  L +L+    RE
Sbjct: 210 LVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLE----RE 265

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           +  ++ +V+   +I G  +     EA   L  +R     P+ + YR +   F     +  
Sbjct: 266 DFKLD-TVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGW 324

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
            + ++      G  P  + +   +           A +L   + +        V N  IG
Sbjct: 325 CKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIG 384

Query: 340 SVSSID--PRSAI------VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           S+   +  P   +      V+   ++    +  ++T +N ++ LC   K ++  ++ K +
Sbjct: 385 SICGREELPNPELLDLAEKVYEEMLVASCVLNKINT-ANFARCLCGVGKFEKAFQIVKEM 443

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
               +  D  +Y  +++FLC + R+ +A+ + QEMK+ G++PDV  Y  L+++ C+  L+
Sbjct: 444 MRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLI 503

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+  +D+M ++GCS N+ TY  L+  + +  ++  A  +FH M+     P+A TY++L
Sbjct: 504 EQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSAL 563

Query: 512 LEGLCQETNLQAAFEVFNKSVN 533
           ++GLC+   +Q A EV+ K + 
Sbjct: 564 IDGLCKAGEIQKACEVYAKLIG 585



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/470 (20%), Positives = 191/470 (40%), Gaps = 31/470 (6%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++L      +Q+     ++  +         S++  ++ +    ++   A+ +FN 
Sbjct: 307 VTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNR 366

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +       G  + N  +        L +   +D A K+++EM       + I    F   
Sbjct: 367 MNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARC 426

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+ ++    +  +     +I   C+ KRV++AF +  E++     
Sbjct: 427 LCGVGKFEKAFQIVKEMMRK--GFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVN 484

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + + +    + R  G +P    Y   +   +  +++ +A ++
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDI 544

Query: 319 GEVIV--------------------SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
              +V                    +G+     +V   LIG+  +I+   +  +F     
Sbjct: 545 FHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIE---SDFYFEGKDT 601

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
               P + T   L   LCK  K  +  ++   + A     +   Y+ +V   C  G +  
Sbjct: 602 DTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDS 661

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  V   M + G  P V  Y SL++   ++  L  A K+  QM    C+ N+ TY  ++ 
Sbjct: 662 AQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVD 721

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
              + GE E AL L   M +KG +P+  TYT+L++GL +   + A  E+F
Sbjct: 722 GLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELF 771



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 145/371 (39%), Gaps = 21/371 (5%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  + A ++  EM  +G       +   I   C+  ++ +   +  E++K     +
Sbjct: 427 LCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKK---VGV 483

Query: 224 NGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           N  V    ++I  FCK   +E+A    DE+R   C P+ + Y  +   +     +++   
Sbjct: 484 NPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQAND 543

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD---------- 332
           +  +       P    Y   I GL     I +A E+   ++     I+ D          
Sbjct: 544 IFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDT 603

Query: 333 ------VLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                    AL+  +      S A    + M+  G  P       L    CK  + D   
Sbjct: 604 ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           EV+  ++   Y   + +Y  ++  +   GRL  A  V+ +M +   +P+V  Y ++++  
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+      A  L   M   GCS N+ TY  LI    + G+++  L LF  M  KG AP+ 
Sbjct: 724 CKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783

Query: 506 TTYTSLLEGLC 516
            TY  L+   C
Sbjct: 784 VTYRILINHCC 794



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/519 (19%), Positives = 214/519 (41%), Gaps = 59/519 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           ++K++       D+S Y  +I  L Q K   KAF +F E+K     + P++     L+  
Sbjct: 439 IVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKK--VGVNPDVYTYTILIDS 496

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV--------------- 208
               G I+ A   FDEM   G   + + +   +  + ++ +L Q                
Sbjct: 497 FCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPN 556

Query: 209 ----------LSMLDEVRK-----------------------RENSMINGSVIAV-LIIH 234
                     L    E++K                       ++   I+ +V+    +++
Sbjct: 557 AITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVN 616

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK ++V +A  +LD +    C+P+ I Y  + + F  +G +   + V  +  K G  P
Sbjct: 617 GLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLP 676

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
             + Y   I  +  + R+  A ++   ++      +     A++ G   + +   A+   
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M +KG  P + T + L   L K  K D  +E++  +       +  +Y ++++  C +
Sbjct: 737 SLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAA 796

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L +A+ ++ EMK+      +  Y + ++   +  L   +  L ++M +   +     Y
Sbjct: 797 GLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFL--ASLGLLEEMESHDTAPIAPVY 854

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATT---YTSLLEGLCQETNLQAAFEVFNK 530
            +LI  FS+ G +E AL L   M+E   + +  +   +TSL++ LC  + ++ A  ++++
Sbjct: 855 GMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSE 914

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
                ++   S     +  L  R  +  A +L  G+  +
Sbjct: 915 MRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQE 953



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 1/146 (0%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y+ +   L      R A  +++E+     D      N L+  CC + L   A +   ++ 
Sbjct: 137 YDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLK 196

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +  TYN L+   +  G++E A R+   M   G   D +T  S  + LC+E    
Sbjct: 197 DFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWG 256

Query: 523 AAFEVFNK-SVNHDVMLARSILSTFM 547
            A ++  +     D +L   ++S  M
Sbjct: 257 DALDLLEREDFKLDTVLCTQMISGLM 282


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 12/399 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L + G I +A ++FDEM+        + +G+ +  +C  ++L   + +L E+  
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEMAA 313

Query: 218 RE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R    N +   SVIA+L     C   +V +A +V++++ +     D   +  V   F   
Sbjct: 314 RGLELNPVAYTSVIALL-----CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +        + +K G+A     Y   I GL     + EA+ + + +      +D    
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 335 NALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             LI     +   + A +  N M++K   P + T + LS  LCK+       E+   + +
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN +++ LC +G L +A   + +M   GL PDV  Y +++ A C+   L  
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L  +M   G    + TYN+L++ F   G +EG  RL   MLEK + P+ TTY SL++
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             C E N+++  E++   ++ +V+   +  +  +   C+
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/484 (21%), Positives = 197/484 (40%), Gaps = 39/484 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +LK+L  + +I     +  ++       D   Y  ++         + A  + +E+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                ++ P    S++A+L  +G + +A+++ ++M   GV      F   +  FC    L
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               +  DE++KR   +    V    +I+G C+   ++EA +VL E+  +    D + Y 
Sbjct: 372 AAARNWFDEMQKR--GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ + +  +G + E  +V  K  +  V P    Y     GL  +  +C A EL       
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL------- 482

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                       + M  KG    + T ++L   LCK    ++ +
Sbjct: 483 ---------------------------LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                +       D+ +Y  ++  LC S  L  A+ ++QEM  KG+ P +  YN LM   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +   K+L + M       N  TYN L+ ++     ++    ++  ML + V P+ 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY  L++G C+  N++ A    ++ +     L  S  +  +  L ++  F  A +L   
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 566 LSSD 569
           +  D
Sbjct: 696 MRKD 699



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 175/411 (42%), Gaps = 49/411 (11%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           PE CN++L  L     +D A+++F E+     E +T  + + +   C   ++     + D
Sbjct: 226 PESCNAVLCRLP----LDEAVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFD 277

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E+    + +  G     +++HG+C    +E A K+L E+  R  + + +AY  V      
Sbjct: 278 EMASPPDVVTYG-----IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV------ 326

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
                                        I  L  E ++ +A  + E +V     +D  V
Sbjct: 327 -----------------------------IALLCDEGQVSDAVRVVEDMVMHGVVLDAAV 357

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ++ G     D  +A  +F+ M ++G      T + L   LC+  +  E   V + + 
Sbjct: 358 FTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEME 417

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +Y V++   C  G++ EA+ V  +M +K + P+V  Y +L +  C++  + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L  +M + G   N+ TYN LI+   + G +E A+R   +M E G+ PD  TYT+++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             LCQ   L  A  +  + ++  +       +  M   C  G      +LL
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 137/631 (21%), Positives = 264/631 (41%), Gaps = 65/631 (10%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVIN-----P 58
           RPA  +A+  +  I++   R    R+W        ++      LSPS+ A  +      P
Sbjct: 9   RPAAAVASTSTPDIVAELGRVLSTRRW--------NKGSAYKRLSPSVTAAHVADLFRAP 60

Query: 59  YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI------------------ 100
                 + AL FF   +++P F H+  S+ ++L+ L+  R                    
Sbjct: 61  VSPLDPATALAFFECVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAE 120

Query: 101 ---NAIDSV--LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
               A+D++  +++V   ++ L    Y   + SL++   T+    +++ +    E + P+
Sbjct: 121 DVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQ--EGLLPD 178

Query: 156 IC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLS 210
               N+++      G +  A + F  +   G++  T      +  +C  + L +   +L 
Sbjct: 179 TVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLM 238

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           M+  +  R N          ++I G C+ + V EA  ++  +    C  +   Y ++ + 
Sbjct: 239 MMPLMGCRRNE-----YSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKG 293

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G + +   +L +    GV P    Y   I G     R+ +A  +  ++       D
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           D   N+LI  +       A    N  I +G  PT+ T +NL    CK  + D+ + V   
Sbjct: 354 DWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN 413

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +++   D+++Y V+++ L    RL+EA   + EM   GL P+V  Y S+++  C+  +
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGM 473

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +++  M   GC  N  TY  LI    +  ++  A+ L   M E G+ P   TYT+
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTT 533

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH------FLV------ 558
           L++G C++     AF +F     + +       +    +LC+ G       FLV      
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVL 593

Query: 559 ----ATKLLRGLSSDLGHSDSHVILLKSLAD 585
                T L+ G S   G++D   +L++ + +
Sbjct: 594 TKVTYTSLVDGFSK-AGNTDFAAVLIEKMVN 623



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/492 (21%), Positives = 201/492 (40%), Gaps = 27/492 (5%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            FT + +++ +++     + +I+    V   +  +   LD   Y  +I  LI+    ++A
Sbjct: 383 GFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEA 442

Query: 139 FSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
               NE+  N   + P +    S++      G +  AL++F  M H G   +   +G  I
Sbjct: 443 KETLNEMFAN--GLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLI 500

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           +   ++ KL + ++++   + +E+ +  G +    +I G CK    + AF++ + +    
Sbjct: 501 YGLIQDKKLHKAMALI--TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNG 558

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PD  AY ++ +     G   E    L +K   GV      Y   + G         A 
Sbjct: 559 LTPDEQAYNVLTDALCKSGRAEEAYSFLVRK---GVVLTKVTYTSLVDGFSKAGNTDFAA 615

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L E +V+     D    + L+ ++        A+   + M   G    +   + +   +
Sbjct: 616 VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K  K D    ++  + ++ +     +Y V +S  C  GR+ EA  +I EM+R G+ PDV
Sbjct: 676 IKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDV 735

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG----------- 484
             YN  +  C     +  A     +M  + C  N  TY +L+  F ++            
Sbjct: 736 VTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSG 795

Query: 485 -----EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                E+    +L   M++ G+ P   TY+S++ G C+ T L+ A  + +  +  D+   
Sbjct: 796 MWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPN 855

Query: 540 RSILSTFMISLC 551
             I  T +I  C
Sbjct: 856 EEIY-TMLIKCC 866


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/571 (22%), Positives = 237/571 (41%), Gaps = 50/571 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           +L +F   S    F H+ L+Y +++  L  + +++ +  +L+Q+K+  +     +++F+I
Sbjct: 57  SLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVI 116

Query: 127 PSLIQGKNTQKAFSVFNEVK-FNC--------------------------------EDIG 153
               +    ++   +F  ++ F C                                E + 
Sbjct: 117 KCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLE 176

Query: 154 PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P +   N LL  L  +G +D A K+  EMS++G +   + +   I   C   KLG V   
Sbjct: 177 PNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMC---KLGDV--- 230

Query: 212 LDEVRKRENSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
               + RE +M    V+ V   +IHG CK  R +EAF +++E+  R   P+ I+Y  V  
Sbjct: 231 ---DKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVIS 287

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
               MG+V     V  +    G  P    +   I G  V  R+ +A  L  +++    + 
Sbjct: 288 CLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSP 347

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +    N LI G  S  +   AI  +N M +    P ++T S +     K        E +
Sbjct: 348 NVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETW 407

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +       ++  Y  MV  LC      +A+ +I  M   G  P V  +N+ ++  CR 
Sbjct: 408 NKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRA 467

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A  + DQM    C  N++TYN L+           A  L   + E+ V  D  TY
Sbjct: 468 GRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTY 527

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +++ G       Q   ++  K + + + L    ++T + + C+ G    A K+L  +S+
Sbjct: 528 NTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISA 587

Query: 569 DLG-HSD--SHVILLKSLADAREVEMAIEHI 596
           +    +D  +H I+L  + +    E A+ ++
Sbjct: 588 EKEFRADIITHTIILWGICNWLGTEEAVVYL 618


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 188/411 (45%), Gaps = 39/411 (9%)

Query: 158 NSLL-AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N LL A++    Y D  + +  +M   G+  +T    + I  FC    +    S+L +V 
Sbjct: 94  NKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVI 153

Query: 217 KRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           K     +  ++I    +I+G CK     +A ++ D++  R C+PD   Y  +      MG
Sbjct: 154 KLG---LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                  ++KK  ++G  P    Y   I  L  +R + EA ++                 
Sbjct: 211 ETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDI----------------- 253

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                            F++M  KG  PT+ + ++L + LC  ++  E   +   +++ +
Sbjct: 254 -----------------FSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ ++++++   C  G + EA GV++ M   G++P+V  YNSLM     +  +  A+
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL+D M   GC  ++ +Y+ILI+ +  V  I+ A +LF+ M+ +G+ P+  +YT+L+   
Sbjct: 357 KLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           CQ   L+ A E+F     +  +      S  +   C++G+   A +L R +
Sbjct: 417 CQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAM 467



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 217/486 (44%), Gaps = 45/486 (9%)

Query: 85  LSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           + ++ +L ++   RQ  +A+ S+ KQ+++  ++ ++     +I      ++    FSV  
Sbjct: 91  IQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLA 150

Query: 144 EV-KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +V K   +   P I    +L+  L   G    AL++FD+M  RG +     +   I   C
Sbjct: 151 KVIKLGLQ---PTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207

Query: 201 ---ENAKLGQVLSMLDEVRKRENSMINGSVIAVL-------------------------- 231
              E A    ++  + EV  + + +   ++I  L                          
Sbjct: 208 KMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267

Query: 232 ----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G C   R +EA  +L+E+      PD + + ++ + F   G+V E + VLK  
Sbjct: 268 SYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTM 327

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSI 344
            ++GV P    Y   + G  ++  + EA++L +V+++     D    + LI     V  I
Sbjct: 328 TEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRI 387

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A   FN MI +G  P   + + L    C+  K  E  E++K +  N Y  D+ +Y+
Sbjct: 388 D--EAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYS 445

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           V++   C  G L +A+ + + M+   L P++  Y  L+++ C+   L  A+KL+ ++F  
Sbjct: 446 VLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVH 505

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +++ Y  +I+   + G ++ AL  F  M E G  P+  +Y  ++ G  Q  +   A
Sbjct: 506 GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRA 565

Query: 525 FEVFNK 530
            ++  +
Sbjct: 566 VQLIGE 571


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 12/399 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L + G I +A ++FDEM+        + +G+ +  +C  ++L   + +L E+  
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEMAA 313

Query: 218 RE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R    N +   SVIA+L     C   +V +A +V++++ +     D   +  V   F   
Sbjct: 314 RGLELNPVAYTSVIALL-----CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +        + +K G+A     Y   I GL     + EA+ + + +      +D    
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 335 NALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             LI     +   + A +  N M++K   P + T + LS  LCK+       E+   + +
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN +++ LC +G L +A   + +M   GL PDV  Y +++ A C+   L  
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L  +M   G    + TYN+L++ F   G +EG  RL   MLEK + P+ TTY SL++
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             C E N+++  E++   ++ +V+   +  +  +   C+
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/484 (21%), Positives = 197/484 (40%), Gaps = 39/484 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +LK+L  + +I     +  ++       D   Y  ++         + A  + +E+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                ++ P    S++A+L  +G + +A+++ ++M   GV      F   +  FC    L
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               +  DE++KR   +    V    +I+G C+   ++EA +VL E+  +    D + Y 
Sbjct: 372 AAARNWFDEMQKR--GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ + +  +G + E  +V  K  +  V P    Y     GL  +  +C A EL       
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL------- 482

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                       + M  KG    + T ++L   LCK    ++ +
Sbjct: 483 ---------------------------LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                +       D+ +Y  ++  LC S  L  A+ ++QEM  KG+ P +  YN LM   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +   K+L + M       N  TYN L+ ++     ++    ++  ML + V P+ 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY  L++G C+  N++ A    ++ +     L  S  +  +  L ++  F  A +L   
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 566 LSSD 569
           +  +
Sbjct: 696 MRKE 699



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 175/411 (42%), Gaps = 49/411 (11%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           PE CN++L  L     +D A+++F E+     E +T  + + +   C   ++     + D
Sbjct: 226 PESCNAVLCRLP----LDEAVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFD 277

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E+    + +  G     +++HG+C    +E A K+L E+  R  + + +AY  V      
Sbjct: 278 EMASPPDVVTYG-----IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV------ 326

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
                                        I  L  E ++ +A  + E +V     +D  V
Sbjct: 327 -----------------------------IALLCDEGQVSDAVRVVEDMVMHGVVLDAAV 357

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ++ G     D  +A  +F+ M ++G      T + L   LC+  +  E   V + + 
Sbjct: 358 FTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEME 417

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +Y V++   C  G++ EA+ V  +M +K + P+V  Y +L +  C++  + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L  +M + G   N+ TYN LI+   + G +E A+R   +M E G+ PD  TYT+++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             LCQ   L  A  +  + ++  +       +  M   C  G      +LL
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 176/359 (49%), Gaps = 8/359 (2%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II    K  + EE++KVL+E+    C PD  A+  V + F    ++ +   V +   + G
Sbjct: 16  IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 75

Query: 292 VAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSVSS---IDPR 347
             P    Y   I GL    ++ E+ K L E+++ G+ T      ++L+ +++    +D  
Sbjct: 76  YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQ-TPSMQAYSSLVRALAKARRVDHA 134

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           S++  F+ MI  G  P       L   LC+  K  +  E +K +  +    ++  YNV++
Sbjct: 135 SSL--FDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLL 192

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC+SG+L +A  +  EMK     PDV  YN+L++A C+   +    KL++ M A+G  
Sbjct: 193 HGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYV 252

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ T++ LI      GE+E AL +F +MLE G  P+  TYT+L+ GLC+   +  A E+
Sbjct: 253 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAREL 312

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           F K     +       ++ +   C+RG    A KL R +S   G   + ++   +L D 
Sbjct: 313 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT-IVTFNTLIDG 370



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 111/495 (22%), Positives = 211/495 (42%), Gaps = 20/495 (4%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   +  +Y SI+KSL    +      VL+++       D   +  ++    +  N +KA
Sbjct: 5   NIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKA 64

Query: 139 FSVFN---EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             V+    E  +  +++   I   L+  LA  G +D +LK+  EM  RG   S   +   
Sbjct: 65  REVYQHMVESGYKPDNVSYHI---LIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSL 121

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGS-----VIAVLIIHGFCKGKRVEEAFKVLD 250
           +    +  ++    S+ DE       MI G      ++   +I G C+  +V++A +   
Sbjct: 122 VRALAKARRVDHASSLFDE-------MIRGGHHPDRLMFYELILGLCQAGKVKDASERFK 174

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++    C+P+   Y ++       G + +   +  + +    +P    Y   +  +   R
Sbjct: 175 QMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKAR 234

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+ E  +L E + +  +  +    + LI G   + +   A+  F  M+E G  P   T +
Sbjct: 235 RVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYT 294

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR- 428
            L   LC+  K  +  E+++ ++      D  +YN +++  C  G + EA  + +EM   
Sbjct: 295 TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            GL P +  +N+L++  C+   L  A +L  +M   G + +  TY ILI+  S   +++ 
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE 414

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           AL ++  M EK    D  +  S + GLC+  N+  A+ VF  +     +           
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474

Query: 549 SLCRRGHFLVATKLL 563
           SL + G    A KL+
Sbjct: 475 SLIKLGRVEDAQKLM 489



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 163/412 (39%), Gaps = 39/412 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SYH ++  L+   +++    +L ++ +   T     Y  ++ +L + +    A S+F+E
Sbjct: 81  VSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDE 140

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          +   L+  L   G + +A + F +M   G + +   + V +   C + +
Sbjct: 141 MIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQ 200

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L Q  ++  E++   +S     V    ++   CK +RVEE  K+ + +R     P+ I +
Sbjct: 201 LEQANTLFAEMK--SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITF 258

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +       G + +   V     + G  P    Y   I GL    ++ +A+EL E +  
Sbjct: 259 STLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQ 318

Query: 325 GKFTIDDDVLNALI------GSVSSIDP-----------RSAIVFFNFMIE--------- 358
                D    N+LI      GS+   +            +  IV FN +I+         
Sbjct: 319 ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG 378

Query: 359 -----------KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                      KG      T   L   L +  K DE +EVYK +    +  D  S    V
Sbjct: 379 RANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFV 438

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             LC +G + +AY V +  ++ G  P+   +  L E+  +   +  A+KL +
Sbjct: 439 GGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 97/193 (50%), Gaps = 2/193 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y+ ++  L    +  E+Y V++EM   G +PDV  +N +M+   R + +  A++++  M
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             SG   +  +Y+ILI   +++G+++ +L++   M+ +G  P    Y+SL+  L +   +
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A  +F++ +       R +    ++ LC+ G    A++  + +       +  V  +L
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 580 LKSLADAREVEMA 592
           L  L  + ++E A
Sbjct: 192 LHGLCSSGQLEQA 204



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 2/237 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M +K     + T S++ K+L K  K +E  +V + + A     D+ ++N ++     S  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +A  V Q M   G  PD   Y+ L+    +   L  + K+  +M   G + +++ Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+   ++   ++ A  LF  M+  G  PD   +  L+ GLCQ   ++ A E F +   H 
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
                 + +  +  LC  G    A  L   + S     D  ++  LL ++  AR VE
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 214/474 (45%), Gaps = 56/474 (11%)

Query: 77  QPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN     ++Y +I+  +  +   ++A++ + K  +V++I  +  +Y  II  L +    
Sbjct: 209 QPN----QITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQ 264

Query: 136 QKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A ++F+E++   + I P +   N ++    S G    A ++  EM  R +    + F 
Sbjct: 265 TDAQNLFSEMQE--KGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFS 322

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           V I    +  K  +   + +E+  R   +I  ++    +I GF K  R++ A ++   + 
Sbjct: 323 VLINALVKEGKFFEAEELYNEMLPR--GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMA 380

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            + C PD I + I+ + +     V +   +L +  + G+   T  Y   I G        
Sbjct: 381 TKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFC------ 434

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
              +LG              LNA            A+     MI  G  P + T + L  
Sbjct: 435 ---QLGN-------------LNA------------ALDLLQEMISSGVCPNVVTCNTLLD 466

Query: 374 NLCKRNKSDELVEVYKVLSA-----------NDYFTDMESYNVMVSFLCTSGRLREAYGV 422
            LC   K  + +E++KV+             ND   D+++YN+++  L   G+  EA  +
Sbjct: 467 GLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEEL 526

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM  +GL PD   YNS+++  C++  L  A +++D M + G S ++ T+  LI+ + +
Sbjct: 527 YEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCK 586

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           VG +   L +F  M  +G+  +A TY +L+ G CQ  N+  A ++F + ++  V
Sbjct: 587 VGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGV 640



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 184/412 (44%), Gaps = 18/412 (4%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           LL V+      D  + +  +M  R +  +   F + I  FC  +KL   LS   ++ K  
Sbjct: 82  LLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLG 141

Query: 219 -ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              S++  S +    +HG C   RV EA     ++    CKP+ IA+  +       G V
Sbjct: 142 FHPSLVTFSTL----LHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRV 193

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVI-VSGKFTIDDD 332
            E   +L +  + G+ P    Y   + G+        A    +++ EV  +     I   
Sbjct: 194 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSA 253

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           +++ L       D ++    F+ M EKG  P L T + +    C   +  E   + + + 
Sbjct: 254 IIDGLWKDGRQTDAQN---LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMF 310

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +++V+++ L   G+  EA  +  EM  +G+ P+   YNS+++   +++ L 
Sbjct: 311 ERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLD 370

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++++  M   GCS ++ T++ILI  +     ++  ++L H M  +G+  +  TYT+L+
Sbjct: 371 AAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLI 430

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            G CQ  NL AA ++  + ++  V       +T +  LC  G    A ++ +
Sbjct: 431 HGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFK 482



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/487 (21%), Positives = 208/487 (42%), Gaps = 54/487 (11%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L  +G +  A+ + D M   G++ + I +G  +   C   K+G  +S L+ +RK 
Sbjct: 182 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC---KMGDTVSALNLLRKM 238

Query: 219 E-------NSMINGSVIAVL------------------------------IIHGFCKGKR 241
           E       N +I  ++I  L                              +I+GFC   R
Sbjct: 239 EEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGR 298

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
             EA ++L E+  R+  PD + + ++       G  FE E +  +    G+ P T  Y  
Sbjct: 299 WSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNS 358

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I G   + R+  A+ +  ++ +   + D    + LI G   +      +   + M  +G
Sbjct: 359 MIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRG 418

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            V    T + L    C+    +  +++ + + ++    ++ + N ++  LC +G+L++A 
Sbjct: 419 LVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDAL 478

Query: 421 GVIQEMKRKGLD-----------PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            + + M++  +D           PDV  YN L+     E     A++L+++M   G   +
Sbjct: 479 EMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPD 538

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TYN +I    +   ++ A ++F +M  KG +PD  T+T+L+ G C+   +    EVF 
Sbjct: 539 TITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFC 598

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAR 587
           +     ++       T +   C+ G+   A  + + + S   + D+  I  +L  L    
Sbjct: 599 EMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 658

Query: 588 EVEMAIE 594
           E++ A++
Sbjct: 659 ELKRAVQ 665


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/545 (23%), Positives = 231/545 (42%), Gaps = 60/545 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEIC--NSLLA 162
           VL+++K + I + S  +  +I +  +    +KA   F+ ++ F+C+   P++   N +L 
Sbjct: 115 VLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCK---PDLFAFNLILH 171

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L        AL ++++M    +    + +G+ I   C+  K    L + DE+  R   +
Sbjct: 172 FLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDR--GI 229

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +   +I  +++ G C+ K++ +A ++  ++R   C  D I Y ++   F   G + +   
Sbjct: 230 LPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFT 289

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L+   K G       Y   I GL   RR  EA    + ++      D  +   +I  +S
Sbjct: 290 LLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLS 349

Query: 343 SIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             + R   A+     M E+G  P     + L K  C     DE   +   +S +D F + 
Sbjct: 350 Q-EGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNN 408

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL------------------- 441
            +Y++++  +C +G + +A  + +EM++ G  P V  +NSL                   
Sbjct: 409 HTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQ 468

Query: 442 -----------------------------MEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
                                        ME  C   ++  A KL  Q+  SG   +++T
Sbjct: 469 MEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRT 528

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YNILI+ F + G I GA +LF  M  KG  PD+ TY +L++GL +    + A E+F + V
Sbjct: 529 YNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMV 588

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-GHSDSHVILLKSLADAREVEM 591
               +   S   T M   CR  +  +A  +      D  G  D  V ++    D  E++ 
Sbjct: 589 KKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEKVRVVAESFDNEELQT 648

Query: 592 AIEHI 596
           AI  +
Sbjct: 649 AIRRL 653



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 196/444 (44%), Gaps = 24/444 (5%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           +V  Q+    +  D   Y  +I  L +   TQ A  +F+E+          I + +L+ L
Sbjct: 184 AVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGL 243

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
                I +A ++F +M   G     I + V +  FC++  L    ++L  + K      +
Sbjct: 244 CQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTK------D 297

Query: 225 GSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
           G ++ V+    +I+G  + +R EEA     ++     KPD + Y I+       G V E 
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEA 357

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-G 339
             +L +  + G+ P T  Y   I G      + EA+ L   I       ++   + LI G
Sbjct: 358 LTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY----------- 388
              +     A   F  M + G +P++ T ++L   LCK N+ +E   ++           
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL 477

Query: 389 --KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
             ++    D   D+ S  VM+  LC SG + +AY ++ ++   G+ PD+  YN L+   C
Sbjct: 478 FLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFC 537

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   +  A KL+ +M   G   +  TY  LI      G  E AL +F  M++KG  P+++
Sbjct: 538 KFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESS 597

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK 530
           TY +++   C+E N+  A  V+ K
Sbjct: 598 TYKTIMTWSCRENNISLALSVWMK 621



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/483 (20%), Positives = 188/483 (38%), Gaps = 83/483 (17%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NT 135
           +P   HS   YHS    ++ S +++ I   L  ++     + S +  + I S++Q + +T
Sbjct: 18  KPTLFHS---YHSRTNPIATSIEVSTIIETLDPMEDGLKVISSRIRSYTITSVLQEQPDT 74

Query: 136 QKAFSVF----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +  F +F          C  +   I   L+   A + Y     K+  E+ +  ++ S+  
Sbjct: 75  RLGFRLFIWSLKSWHLRCRTVQDLIIGKLIKENAFELY----WKVLQELKNSAIKISSEA 130

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F V I  + E          +DE                          +  E+F ++ +
Sbjct: 131 FSVLIEAYSEAG--------MDE--------------------------KAVESFSLMRD 156

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
               +CKPD  A+ ++               +++K+              F+L L V  +
Sbjct: 157 F---DCKPDLFAFNLILH------------FLVRKE-------------AFLLALAVYNQ 188

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
           + +     +V+  G           + G   +   + A+V F+ M ++G +P     S +
Sbjct: 189 MLKCNLNPDVVTYGIL---------IHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIV 239

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LC+  K  +   ++  + A+    D+ +YNV+++  C SG L +A+ ++Q + + G 
Sbjct: 240 LSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGH 299

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
              V  Y  L+    R      A   + +M       ++  Y I+I   S+ G +  AL 
Sbjct: 300 ILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALT 359

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M E+G+ PD   Y +L++G C    L  A  +  +   HD        S  +  +C
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMC 419

Query: 552 RRG 554
           + G
Sbjct: 420 KNG 422



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 190/456 (41%), Gaps = 46/456 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ +L     S  ++   ++L+ +  +   L    Y  +I  L + +  ++A   +  
Sbjct: 269 ITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ- 327

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   E+I P++    + +  L+ +G +  AL +  EM+ RG+   TI +   I  FC+ 
Sbjct: 328 -KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDM 386

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  S+  E+ K +    N    ++LI  G CK   + +A  +  E+    C P  +
Sbjct: 387 GYLDEAESLRLEISKHD-CFPNNHTYSILIC-GMCKNGLINKAQHIFKEMEKLGCLPSVV 444

Query: 263 AYRIVA---------EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +  +          EE +L+   ++ E+V K    L ++  T+   +     ++  R+C
Sbjct: 445 TFNSLINGLCKANRLEEARLL--FYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLC 502

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           E+   G ++ + K  +                          +++ G +P + T + L  
Sbjct: 503 ES---GMILKAYKLLMQ-------------------------LVDSGVLPDIRTYNILIN 534

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK    +   +++K +    +  D  +Y  ++  L  +GR  +A  + ++M +KG  P
Sbjct: 535 GFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVP 594

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           + S Y ++M   CRE+ +  A  +W +          +   ++   F    E++ A+R  
Sbjct: 595 ESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEKVRVVAESFDN-EELQTAIRRL 653

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             M  K    D   YT  L GL Q      AF +F+
Sbjct: 654 LEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFS 689



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/255 (18%), Positives = 101/255 (39%), Gaps = 37/255 (14%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G I  A K+  ++   GV      + + I  FC+   +     +  E++ + +  +
Sbjct: 501 LCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH--M 558

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA--------------- 268
             SV    +I G  +  R E+A ++ +++  + C P+   Y+ +                
Sbjct: 559 PDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618

Query: 269 -------------EEFKLMGSVFERE---VVLKKKRKLGVAPRTND---YREFILGLIVE 309
                        E+ +++   F+ E     +++  ++ +  +  D   Y  F++GL+  
Sbjct: 619 WMKYLRDFRGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQA 678

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
           +R CEA  +  V+   K  I       LIG +  ++    A+  F F +E+G        
Sbjct: 679 KRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPIC 738

Query: 369 SNLSKNLCKRNKSDE 383
           + L  NL   ++ D+
Sbjct: 739 NQLLCNLLHLDRKDD 753


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 6/397 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C SL+      G    A ++ + + + G     I + V I  +C++ ++ + L +L+ + 
Sbjct: 144 CTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM- 202

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
               S+    V    I+   C   +++EA +VLD    REC PD I Y I+ E       
Sbjct: 203 ----SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSG 258

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V +   +L + RK G  P    Y   I G+  E R+ EA +    + S     +    N 
Sbjct: 259 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNI 318

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ S+ S      A    + M+ KG  P++ T + L   LC++      ++V + +  + 
Sbjct: 319 ILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 378

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+L+ A C++  +  A 
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           ++ +Q+ + GCS  L TYN +I   ++VG+ E A+ L   M  KG+ PD  TY++LL GL
Sbjct: 439 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            +E  +  A ++F+      +  +    +  M+ LC+
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 535



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 178/401 (44%), Gaps = 10/401 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +     KA  V   +      + P++   N++L  L   G +  A++
Sbjct: 175 DVITYNVLIGGYCKSGEIDKALEVLERM-----SVAPDVVTYNTILRSLCDSGKLKEAME 229

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D    R      I + + I   C ++ +GQ + +LDE+RK+        V   ++I+G
Sbjct: 230 VLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK--GCKPDVVTYNVLING 287

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+ +    CKP+ I + I+       G   + E +L    + G +P 
Sbjct: 288 ICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPS 347

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +R +  A ++ E +       +    N L+ G         AI +  
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLE 407

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + L   LCK  K D  VE+   LS+      + +YN ++  L   G
Sbjct: 408 IMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 467

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +   A  +++EM+RKGL PD+  Y++L+    RE  +  A K++  M       +  TYN
Sbjct: 468 KTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYN 527

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++    +  +   A+     M+EKG  P   TYT L+EG+
Sbjct: 528 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F   MI +G +P +   ++L +  C+  K+ +   + ++L  +    D+ +YNV++   C
Sbjct: 128 FLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYC 187

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            SG + +A  V++ M    + PDV  YN+++ + C    L+ A ++ D+     C  ++ 
Sbjct: 188 KSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVI 244

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY ILI        +  A++L   M +KG  PD  TY  L+ G+C+E  L  A +  N  
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            ++         +  + S+C  G ++ A +LL
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTGRWMDAERLL 336



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 165/404 (40%), Gaps = 39/404 (9%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EE  K L+ +  +   PD IA   +   F   G   +   +++     G  P    Y  
Sbjct: 122 LEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNV 181

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            I G       C++ E+ + +         +VL  +  SV+                   
Sbjct: 182 LIGGY------CKSGEIDKAL---------EVLERM--SVA------------------- 205

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + + ++LC   K  E +EV       + + D+ +Y +++   C    + +A  
Sbjct: 206 -PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMK 264

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ EM++KG  PDV  YN L+   C+E  L  A K  + M + GC  N+ T+NI++    
Sbjct: 265 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMC 324

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G    A RL  +ML KG +P   T+  L+  LC++  L  A +V  K   H  +    
Sbjct: 325 STGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSL 384

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWI 599
             +  +   C+      A + L  + S   + D  ++  LL +L    +V+ A+E +  +
Sbjct: 385 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQL 444

Query: 600 QESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
                + +      +   L+     E  + LL  ++ K L  +I
Sbjct: 445 SSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDI 488



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+ +  L  +G L E    ++ M  +G  PDV    SL+   CR    + A ++ + +  
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG   ++ TYN+LI  + + GEI+ AL +   M    VAPD  TY ++L  LC    L+ 
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKE 226

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           A EV ++ +  +        +  + + C       A KLL
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLL 266


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 170/361 (47%), Gaps = 23/361 (6%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           MS  G        G F    C++ K  + LS+L++        +  +V+   +I G C+ 
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEK-----EEFVPDTVLYTKMISGLCEA 55

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL------GVA 293
              EEA   L  +R   C P+ + YRI      L+     +E + + KR L      G  
Sbjct: 56  SLFEEAMDFLTRMRASSCLPNVLTYRI------LLCGCLNKEKLGRCKRILSMMITEGCY 109

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIV- 351
           P    +   +           A +L + +V         V N LIG + SS +P   ++ 
Sbjct: 110 PSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLD 169

Query: 352 ----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                +  M+E G V     +SN S+ LC   K ++   V + + +  +  D  +Y+ ++
Sbjct: 170 LAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVI 229

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
            +LC + ++ +A+ + QEMKR G+ PDV  Y +L+++ C+   +  A+  +D+M   GC+
Sbjct: 230 GYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCA 289

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ TY  LI  + +  ++  A  ++  ML KG  P+  TYT+L++GLC+   ++ A ++
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349

Query: 528 F 528
           +
Sbjct: 350 Y 350



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 222/504 (44%), Gaps = 45/504 (8%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
           +V++++       D+S Y  +I  L      +KAF +F E+K N   I P+  +  +L+ 
Sbjct: 208 NVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRN--GIAPDVYVYTTLID 265

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                G+I+ A   FDEM   G   + + +   I  + ++ K+ +   + + +  +    
Sbjct: 266 SFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSK--GC 323

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDF-IAYRIVAEEFKLMGSVFER 280
               V    +I G CK  ++E+A ++   ++    + PD  + +R+V       G+  E 
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVD------GASNE- 376

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-G 339
                        P    Y   + GL    ++ EA++L + +       +  V +ALI G
Sbjct: 377 -------------PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDG 423

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              +     A   F  M+E G  P + T S+L   L K  + D  ++V   +  N    +
Sbjct: 424 CCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPN 483

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           +  Y  M+  LC  G+  EAY ++  M+ KG +P+V  Y ++++   +   +    +L  
Sbjct: 484 VVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQ 543

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE- 518
           QM + GC+ N  TY +LI+     G ++ A +L   M +         Y  ++EG  +E 
Sbjct: 544 QMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREF 603

Query: 519 -TNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS----DL 570
             +L  +FE+   S N  V +A   R ++  F+    + G   +A +L   LSS      
Sbjct: 604 IASLYLSFEI---SENDSVPVAPVYRVLIDNFI----KAGRLEIALELNEELSSFSPFSA 656

Query: 571 GHSDSHVILLKSLADAREVEMAIE 594
            + + H+ L+++L+ A + + A E
Sbjct: 657 ANQNIHITLIENLSLAHKADKAFE 680



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 164/379 (43%), Gaps = 20/379 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A K + EM   GV  + +    F    C   K  +  +++ E+  +    I  +   
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSK--GFIPDTSTY 225

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I   C   +VE+AF++  E++     PD   Y  + + F   G + +      +  +
Sbjct: 226 SKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMER 285

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G AP    Y   I   +  R++ +A E+ E+++S   T +     ALI  +     I+ 
Sbjct: 286 DGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEK 345

Query: 347 RSAI-------------VFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
            S I             V  +F +  G    P + T   L   LCK  +  E  ++ K +
Sbjct: 346 ASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSM 405

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           S      +   Y+ ++   C +G+L EA  V   M   G DP+V  Y+SL++   ++  L
Sbjct: 406 SVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRL 465

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A K+  +M  + C+ N+  Y  +I    +VG+ + A +L   M EKG  P+  TYT++
Sbjct: 466 DLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAM 525

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++G  +   ++   E+  +
Sbjct: 526 IDGFGKSGRVEKCLELLQQ 544



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/476 (20%), Positives = 188/476 (39%), Gaps = 101/476 (21%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           P I NSL+      G    A K+  +M   G +   + + + I   C + + G+   +LD
Sbjct: 112 PRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGK--DVLD 169

Query: 214 EVRKRENSMING--------------------------SVIAVLIIHGF----------- 236
              K    M+                            +VI  ++  GF           
Sbjct: 170 LAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVI 229

Query: 237 ---CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
              C   +VE+AF++  E++     PD   Y  + + F   G + +      +  + G A
Sbjct: 230 GYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCA 289

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
           P    Y   I   +  R++ +A E+                                  +
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEV----------------------------------Y 315

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-NDYFTDME----------- 401
             M+ KG  P + T + L   LCK  K ++  ++YK++   N    D++           
Sbjct: 316 EMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASN 375

Query: 402 -----SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
                +Y  +V  LC + +++EA  +++ M  +G +P+   Y++L++ CC+   L  A++
Sbjct: 376 EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE 435

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++  M   G   N+ TY+ LI +  +   ++ AL++   MLE   AP+   YT +++GLC
Sbjct: 436 VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLC 495

Query: 517 QETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +      A+++      K  N +V+   +++  F     + G      +LL+ +SS
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFG----KSGRVEKCLELLQQMSS 547



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 150/385 (38%), Gaps = 20/385 (5%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  + A  +  EM  +G    T  +   I   C  +K+ +   +  E+++  N + 
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKR--NGIA 254

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
               +   +I  FCK   +E+A    DE+    C P+ + Y  +   +     V +   V
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEV 314

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI---------VSGKFTIDDDVL 334
            +     G  P    Y   I GL    +I +A ++ +++         V   F + D   
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGAS 374

Query: 335 N--------ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           N        AL+ G   +   + A      M  +G  P       L    CK  K DE  
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           EV+  +    Y  ++ +Y+ ++  L    RL  A  V+ +M      P+V  Y  +++  
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGL 494

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+      A KL   M   GC+ N+ TY  +I  F + G +E  L L   M  KG AP+ 
Sbjct: 495 CKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNF 554

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TY  L+   C    L  A ++  +
Sbjct: 555 VTYRVLINHCCSTGLLDEAHKLLEE 579



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 45/246 (18%)

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S   Y  D  +       LC SG+ REA  +++   ++   PD   Y  ++   C   L
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLE---KEEFVPDTVLYTKMISGLCEASL 57

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNI----------------------------------- 475
              A     +M AS C  N+ TY I                                   
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN-----LQAAFEVFNK 530
           L+  +   G+   A +L   M++ G  P    Y  L+ G+C         L  A + + +
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADARE 588
            +   V+L +  +S F   LC  G F  A  ++R + S   +  + ++  ++  L +A +
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237

Query: 589 VEMAIE 594
           VE A +
Sbjct: 238 VEKAFQ 243


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 134/571 (23%), Positives = 242/571 (42%), Gaps = 75/571 (13%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           RKW   + + L +L  +  L+P LV  V+      H  LA  FF WA QQ  ++H+  +Y
Sbjct: 130 RKWDAEMGKQLERLKFK--LNPGLVCDVVVNQKDLH--LAKCFFTWAGQQDGYSHTVGTY 185

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK- 146
             ++K L+ +++ +A+  +L  +      +   +   ++ +     N   A  +FN++K 
Sbjct: 186 TLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKS 245

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F C +    + N +L +L   G+  +A+ +F ++    ++     F +F+  F  + +L 
Sbjct: 246 FGC-NPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLD 304

Query: 207 QVL----------------------------SMLDEVRKRENSMIN-----GSVIAVLII 233
                                            +DE  K  N M N       V    ++
Sbjct: 305 PAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLV 364

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +G  K  R+EEA +V  E++   C PD IAY  + +     G       + K+ +  G+ 
Sbjct: 365 NGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLV 424

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAI 350
           P    Y   I  L    R  EA +L   +       D    N LI   G    +D   AI
Sbjct: 425 PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAI 484

Query: 351 VFFNFMIEKG------------------------RVPTLS-------TLSNLSKNLCKRN 379
           +    M+EKG                          P+L        T + L        
Sbjct: 485 I--KEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNG 542

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE V++ +V+  ++    + +Y  +V  L  +GRL EA  +++EM+++G +P V  Y+
Sbjct: 543 HVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYS 602

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SLM +  + D    +  L+D+M   GC  ++ TY+++I+   +  +++ AL +F  M E+
Sbjct: 603 SLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEE 662

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           G+ P    Y +LL  L ++  +  A ++FN+
Sbjct: 663 GMEPLLGNYKTLLSSLVKDEKIDFALQIFNE 693



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 196/435 (45%), Gaps = 21/435 (4%)

Query: 83   SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
            S ++Y S++ S     Q     S+  ++       D S Y  +I  L +  +  +A  VF
Sbjct: 597  SVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVF 656

Query: 143  NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
              +K   E + P + N  +LL+ L  D  ID AL++F+E+    +   T  + + +    
Sbjct: 657  GRMKE--EGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLV 714

Query: 201  ENAKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIR 255
            ++ ++       DE  K  +SM N +++  L     ++ G  K  R+EEAF +  ++   
Sbjct: 715  KSNRV-------DEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEE 767

Query: 256  ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              +PD +AY  + +     G +    ++ +   K    P    Y   I  L  E R+ EA
Sbjct: 768  GHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827

Query: 316  KELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
                E  +S   T +  V ++LI   G    +D   A+  F  M  +   P + T +NL 
Sbjct: 828  YYFFENSISKGCTPNVGVYSSLIDSFGKKGMVD--RALELFEEMQRRQCPPNIVTYNNLL 885

Query: 373  KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              L K  + +   ++ + +       D+ +YN+++  +   G + EA    + MK KG+ 
Sbjct: 886  SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV 945

Query: 433  PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            PDV  + SL+E+  + D L  A +L+D M   G + ++ TYN+LI      G++  A  +
Sbjct: 946  PDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMI 1005

Query: 493  FHNMLEKGVAPDATT 507
            FH M  KG  PD  T
Sbjct: 1006 FHEMKVKGCMPDGIT 1020



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/579 (21%), Positives = 249/579 (43%), Gaps = 74/579 (12%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N +   ++Y++++  L  + + +    + K++K   +  +   Y  +I  L +    
Sbjct: 384 KENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQ 443

Query: 136 QKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG--------- 184
            +A+ +F+++K   +   P++   N+L+ VL   G +D  L +  EM  +G         
Sbjct: 444 PEAWQLFHDLKE--QGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDS 501

Query: 185 --------------VEFSTIGF--------GVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                         VE+ ++GF           +  F  N  + + + +L+ ++K E   
Sbjct: 502 NAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE--C 559

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE- 281
           I   V    ++ G  K  R++EA  +L E+  + C+P  + Y        LM S ++R+ 
Sbjct: 560 IPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYS------SLMASFYKRDQ 613

Query: 282 -----VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI-VSGKFTIDDDVLN 335
                 +  +  + G     + Y       +V   +C++ ++ + + V G+  + ++ + 
Sbjct: 614 EEESLSLFDEMVRKGCVADVSTYS------LVINCLCKSDDVDQALDVFGR--MKEEGME 665

Query: 336 ALIGS----VSSIDPRSAIVF----FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            L+G+    +SS+     I F    FN + E   VP     + +   L K N+ DE  ++
Sbjct: 666 PLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKL 725

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +   +   D+ +Y  ++  L  SGRL EA+ +  +M  +G +PDV  Y SLM+   +
Sbjct: 726 VDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGK 785

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L  A  ++  M    C  ++ TY+ LI    + G +E A   F N + KG  P+   
Sbjct: 786 GGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGV 845

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR--- 564
           Y+SL++   ++  +  A E+F +             +  +  L + G   VA KLL    
Sbjct: 846 YSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME 905

Query: 565 --GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
             G   DL    ++ IL+  +     V+ A  + K ++E
Sbjct: 906 KVGCVPDL---VTYNILIDGVGKMGMVDEAESYFKRMKE 941



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 203/447 (45%), Gaps = 40/447 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L  + +++   S+L++++          Y  ++ S  +    +++ S+F+E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623

Query: 145 -VKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            V+  C  D+     + ++  L     +D AL +F  M   G+E     +   +    ++
Sbjct: 624 MVRKGCVADV--STYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKD 681

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+   L + +E++  E+S++  + +  ++++G  K  RV+EA K++D ++ +   PD  
Sbjct: 682 EKIDFALQIFNELQ--ESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLF 739

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +     G + E   +  K  + G  P    Y   +                   
Sbjct: 740 TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLM------------------- 780

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                    DVL    G +S      A++ F  M +K  VP + T S+L  +L K  + +
Sbjct: 781 ---------DVLGKG-GKLSH-----ALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E    ++   +     ++  Y+ ++      G +  A  + +EM+R+   P++  YN+L+
Sbjct: 826 EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
               +   L  A+KL ++M   GC  +L TYNILI    ++G ++ A   F  M EKG+ 
Sbjct: 886 SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV 945

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFN 529
           PD  T+TSL+E L +   L  A E+F+
Sbjct: 946 PDVITFTSLIESLGKVDKLLEACELFD 972



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 202/448 (45%), Gaps = 27/448 (6%)

Query: 159  SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
            +L+  L   G +D A+ +  EM  +G E S + +   +  F +  +  + LS+ DE+ ++
Sbjct: 568  TLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK 627

Query: 219  ENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                  G V  V    L+I+  CK   V++A  V   ++    +P    Y+       L+
Sbjct: 628  ------GCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT------LL 675

Query: 275  GSVFERE------VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
             S+ + E       +  + ++  + P T  Y   + GL+   R+ EA +L + + +    
Sbjct: 676  SSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735

Query: 329  IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
             D     +L+ G   S     A   F  M E+G  P +   ++L   L K  K    + +
Sbjct: 736  PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795

Query: 388  YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            ++ ++      D+ +Y+ ++  L   GR+ EAY   +    KG  P+V  Y+SL+++  +
Sbjct: 796  FRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGK 855

Query: 448  EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            + ++  A +L+++M    C  N+ TYN L+S  ++ G +  A +L   M + G  PD  T
Sbjct: 856  KGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVT 915

Query: 508  YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            Y  L++G+ +   +  A   F +     ++      ++ + SL +    L A +L   + 
Sbjct: 916  YNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME 975

Query: 568  SDLGHSDSHV---ILLKSLADAREVEMA 592
             + G++ S V   +L+  L  A +V  A
Sbjct: 976  EE-GYNPSVVTYNVLIDILGRAGKVHEA 1002



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 115/258 (44%), Gaps = 15/258 (5%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK---FTIDDDVLNALI- 338
           +  + +  G  P TN Y  F+L L+V+     +     VIV GK   F I  D     I 
Sbjct: 239 IFNQMKSFGCNPSTNMYN-FVLELLVKGGFYHSA----VIVFGKLGQFRIQPDAQTFRIF 293

Query: 339 ----GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
                    +DP +  +    MI+ G  P + T + L   L K    DE  + +  +   
Sbjct: 294 VHSFNRSGRLDPAAEPI--QEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +Y  +V+ L  +GRL EA  V  EMK     PD   YN+L++   +      A
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMA 411

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L+ +M   G   NL+TYNI+IS   + G    A +LFH++ E+G  PD  TY +L++ 
Sbjct: 412 CGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDV 471

Query: 515 LCQETNLQAAFEVFNKSV 532
           L +   +     +  + V
Sbjct: 472 LGKGGQMDKVLAIIKEMV 489



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 130/298 (43%), Gaps = 6/298 (2%)

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTL 365
           ++ RR  +A E+G+ +   KF ++  ++  ++  V+  D   A  FF +  ++ G   T+
Sbjct: 126 VIRRRKWDA-EMGKQLERLKFKLNPGLVCDVV--VNQKDLHLAKCFFTWAGQQDGYSHTV 182

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + + K L    ++D +V++   +    +   M     ++    ++  +  A  +  +
Sbjct: 183 GTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQ 242

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           MK  G +P  + YN ++E   +      A  ++ ++       + +T+ I +  F+  G 
Sbjct: 243 MKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGR 302

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ A      M++ G+ P   T+T L++ L +  N+  A + FN   N          +T
Sbjct: 303 LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTT 362

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQE 601
            +  L + G    A ++   +  +    D  ++  L+  L  A E +MA    K +++
Sbjct: 363 LVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/545 (22%), Positives = 237/545 (43%), Gaps = 53/545 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++K L +  +I+    +   +K      D+  Y  ++  L Q      A  +  E
Sbjct: 271 VTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQE 330

Query: 145 V-----KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +     ++  + I P++  S  L+ +L  +G +  A ++ + M  RG     + +   I 
Sbjct: 331 MLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 390

Query: 198 KFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVL----------------------- 231
             C   ++ +   +   ++K   R +++  G+++  L                       
Sbjct: 391 GLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRY 450

Query: 232 -------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
                        II G CK +R +EA ++ +E++ +   PD I+Y  +   F L G   
Sbjct: 451 GIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWE 510

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           + + +  +   +G+ P        I  L  + ++ EA +L EV++     +D      L+
Sbjct: 511 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--SAND 395
            G         A   F  M + G +P + T + L K LC+       +E++K +    + 
Sbjct: 571 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 630

Query: 396 YFTDME----SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           Y  + +    SY++++  LC  GR  EA  + +EMK  G+ PDV  Y SL+   CR    
Sbjct: 631 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 690

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + AK L+++M   G   ++ T+++LI    + G++  A  L   M+++G  P+  TYT+L
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           ++GLC    +  A ++F K      +       T M  LC+ G+   A +L + + SD G
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTG 810

Query: 572 HSDSH 576
              ++
Sbjct: 811 QYGTN 815



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 207/488 (42%), Gaps = 56/488 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  I+  L   R+ +    + +++K   I  D   Y  +I         +KA  +FNE
Sbjct: 459 ISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNE 518

Query: 145 VKFNCEDIG--PEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +     D+G  P++  S  L+ +L   G +  A K+ + +  RG     +     +   C
Sbjct: 519 ML----DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLC 574

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----- 255
              ++ +   +  +++K    M N    A L+  G C+   ++ A ++   +        
Sbjct: 575 MKHRISKATQLFLKMQKL-GCMPNVVTCATLM-KGLCQSGNIKIALELHKNMLSDTSPYG 632

Query: 256 -ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
             CKP+ I+Y I+ +     G   E   + K+ + LGV P    Y   I G       C 
Sbjct: 633 INCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGF------CR 686

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                    SGK+                   + A   FN M++ G  P ++T S L   
Sbjct: 687 ---------SGKW-------------------KDAKYLFNEMVDIGVQPDVTTFSVLIDM 718

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K  E  E+ +V+       +  +Y  +V  LC + R+ EA  +  +M++ G  PD
Sbjct: 719 LCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPD 778

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSG-NLK----TYNILISKFSEVGEIEG 488
           V  Y +LM+  C+   ++ A +L  +M + +G  G N K    +Y+I+I    + G  + 
Sbjct: 779 VVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE 838

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  LF  M   GV P+  +YTSL+ G C+   L+ A  +FN+ V+  V L     S  + 
Sbjct: 839 ARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIH 898

Query: 549 SLCRRGHF 556
             C+ G  
Sbjct: 899 GFCKEGQI 906



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 232/510 (45%), Gaps = 32/510 (6%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVN---------KITLDSSVYRFIIPSLIQGKNT 135
           ++Y +++K L  +  IN I   L Q  +N         K TL S  Y  II  L + +  
Sbjct: 125 ITYGTLMKGLCQTGNIN-IALQLHQEMLNDTGRYGIKCKPTLIS--YSIIIDGLCKDRRE 181

Query: 136 QKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            +A  +F E+K   + + P++ +  SL+      G  + A  +F+EM   G++      G
Sbjct: 182 DEARELFKEMKA--QGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           V I  FC+  K+ +   +L+ +  R    I   V    +I G C   R+ EA ++   ++
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHR--GCILDIVTYSTLIKGLCMKHRISEATQLFMSMK 297

Query: 254 IRECKPDFIAY----RIVAEEFKLMGSVFEREVVLKKKRKLGVA---PRTNDYREFILGL 306
              C+PD IAY    + + +  K+  ++   + +L    + G+    P        I  L
Sbjct: 298 KLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDIL 357

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             E ++ EA EL EV++     +D    + LI G         A   F  M + G  P  
Sbjct: 358 CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 417

Query: 366 STLSNLSKNLCKRNKSDELVEVYK-VLSANDYF-----TDMESYNVMVSFLCTSGRLREA 419
            T   L K LC+    +  +++++ +L+    +       + SY++++  LC   R  EA
Sbjct: 418 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 477

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + +EMK +G+ PDV  Y +L+   C       AK L+++M   G   ++ T ++LI  
Sbjct: 478 RELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDM 537

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + G++  A +L   ++++G   D  T T+L++GLC +  +  A ++F K      M  
Sbjct: 538 LCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPN 597

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSD 569
               +T M  LC+ G+  +A +L + + SD
Sbjct: 598 VVTCATLMKGLCQSGNIKIALELHKNMLSD 627



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 134/571 (23%), Positives = 230/571 (40%), Gaps = 96/571 (16%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  I+  L   R+ +    + K++K   +  D   Y  +I         +KA  +FNE
Sbjct: 166 ISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNE 225

Query: 145 VKFNCEDIG--PEICNS--LLAVLASDGYIDNALKMFDEMSHRG-----VEFST------ 189
           +     D+G  P++  S  L+ +   +G +  A ++ + M HRG     V +ST      
Sbjct: 226 ML----DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLC 281

Query: 190 ------------------------IGFGVFIWKFCENAKLGQVL---------------- 209
                                   I +G  +   C+  K+   L                
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 341

Query: 210 ---------SMLDEVRKRENSMIN-----------GSVIAVL----IIHGFCKGKRVEEA 245
                    SML ++  +E  +I            G ++ ++    +I G C   R+ EA
Sbjct: 342 CIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEA 401

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-----FEREVVLKKKR-KLGVAPRTNDY 299
             +   ++   C+PD I Y  + +     G++       +E++    R  +   P    Y
Sbjct: 402 TWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISY 461

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL  +RR  EA+EL E + +     D      LI G   S     A   FN M++
Sbjct: 462 SIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 521

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G  P ++T S L   LCK+ K  E  ++ +V+       D+ +   +V  LC   R+ +
Sbjct: 522 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISK 581

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------FASGCSGNLKT 472
           A  +  +M++ G  P+V    +LM+  C+   ++ A +L   M      +   C  N  +
Sbjct: 582 ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 641

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y+I+I    + G  + A  LF  M   GV PD  +YTSL+ G C+    + A  +FN+ V
Sbjct: 642 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 701

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  V    +  S  +  LC+ G  + A +LL
Sbjct: 702 DIGVQPDVTTFSVLIDMLCKEGKVIEANELL 732



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 39/342 (11%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I   CK  +V EA ++L+ +  R C  D + Y  + +   +   + E   +    +KL
Sbjct: 59  MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 118

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIV--SGKFTIDDDVLNALIGSVSSIDPRS 348
           G  P    Y   + GL     I  A +L + ++  +G++ I                   
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK---------------- 162

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
                         PTL + S +   LCK  + DE  E++K + A     D+ SY  ++ 
Sbjct: 163 --------------PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 208

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C SG+  +A  +  EM   G+ PDV+    L++  C+E  +  A +L + M   GC  
Sbjct: 209 GFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCIL 268

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF--- 525
           ++ TY+ LI        I  A +LF +M + G  PDA  Y +L++GLCQ   +  A    
Sbjct: 269 DIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLH 328

Query: 526 -EVFNKSVNHDVMLARSILST---FMISLCRRGHFLVATKLL 563
            E+ N +  + +   R  ++T    +  LC+ G  + A +LL
Sbjct: 329 QEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELL 370



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P ++T S L   LCK  K  E  E+ +V+       D+ +Y+ ++  LC   R+ EA  +
Sbjct: 52  PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 111

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------FASGCSGNLKTYNIL 476
              M++ G  PD   Y +LM+  C+   +  A +L  +M      +   C   L +Y+I+
Sbjct: 112 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 171

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SV 532
           I    +    + A  LF  M  +G+ PD  +YTSL+ G C     + A  +FN+     +
Sbjct: 172 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGI 231

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             DV  +  ++  F    C+ G  + A +LL
Sbjct: 232 QPDVTTSGVLIDMF----CKEGKVIEANELL 258



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 9/275 (3%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
               MI++G +  + T S L K LC  ++  E   ++  +       D  +Y  ++  LC
Sbjct: 76  LLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLC 135

Query: 412 TSGRLREAYGVIQEM----KRKGL--DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            +G +  A  + QEM     R G+   P +  Y+ +++  C++     A++L+ +M A G
Sbjct: 136 QTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQG 195

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              ++ +Y  LI  F   G+ E A  LF+ ML+ G+ PD TT   L++  C+E  +  A 
Sbjct: 196 MMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEAN 255

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSL 583
           E+    V+   +L     ST +  LC +     AT+L   +       D  ++  L+K L
Sbjct: 256 ELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGL 315

Query: 584 ADAREVEMAIE-HIKWIQESSPTMLQEISAELFAS 617
               ++ +A+  H + + ++S   ++ I  ++  S
Sbjct: 316 CQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTS 350



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN---------SLMEACCR 447
           F D  ++N++++ LC   R+ E    +  + R+G  PD+  Y+          L++  C+
Sbjct: 7   FPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCK 66

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  +  A +L + M   GC  ++ TY+ LI        I  A  LF +M + G  PDA T
Sbjct: 67  EGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAIT 126

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVN 533
           Y +L++GLCQ  N+  A ++  + +N
Sbjct: 127 YGTLMKGLCQTGNINIALQLHQEMLN 152


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 12/399 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L + G I +A ++FDEM+        + +G+ +  +C  ++L   + +L E+  
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEMAA 313

Query: 218 RE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R    N +   SVIA+L     C   +V +A +V++++ +     D   +  V   F   
Sbjct: 314 RGLELNPVAYTSVIALL-----CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +        + +K G+A     Y   I GL     + EA+ + + +      +D    
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 335 NALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             LI     +   + A +  N M++K   P + T + LS  LCK+       E+   + +
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN +++ LC +G L +A   + +M   GL PDV  Y +++ A C+   L  
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L  +M   G    + TYN+L++ F   G +EG  RL   MLEK + P+ TTY SL++
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             C E N+++  E++   ++ +V+   +  +  +   C+
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/481 (21%), Positives = 196/481 (40%), Gaps = 39/481 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +LK+L  + +I     +  ++       D   Y  ++         + A  + +E+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                ++ P    S++A+L  +G + +A+++ ++M   GV      F   +  FC    L
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               +  DE++KR   +    V    +I+G C+   ++EA +VL E+  +    D + Y 
Sbjct: 372 AAARNWFDEMQKR--GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ + +  +G + E  +V  K  +  V P    Y     GL  +  +C A EL       
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL------- 482

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                       + M  KG    + T ++L   LCK    ++ +
Sbjct: 483 ---------------------------LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                +       D+ +Y  ++  LC S  L  A+ ++QEM  KG+ P +  YN LM   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +   K+L + M       N  TYN L+ ++     ++    ++  ML + V P+ 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY  L++G C+  N++ A    ++ +     L  S  +  +  L ++  F  A +L   
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 566 L 566
           +
Sbjct: 696 M 696



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 175/411 (42%), Gaps = 49/411 (11%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           PE CN++L  L     +D A+++F E+     E +T  + + +   C   ++     + D
Sbjct: 226 PESCNAVLCRLP----LDEAVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFD 277

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E+    + +  G     +++HG+C    +E A K+L E+  R  + + +AY  V      
Sbjct: 278 EMASPPDVVTYG-----IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV------ 326

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
                                        I  L  E ++ +A  + E +V     +D  V
Sbjct: 327 -----------------------------IALLCDEGQVSDAVRVVEDMVMHGVVLDAAV 357

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ++ G     D  +A  +F+ M ++G      T + L   LC+  +  E   V + + 
Sbjct: 358 FTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEME 417

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +Y V++   C  G++ EA+ V  +M +K + P+V  Y +L +  C++  + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L  +M + G   N+ TYN LI+   + G +E A+R   +M E G+ PD  TYT+++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             LCQ   L  A  +  + ++  +       +  M   C  G      +LL
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 142/613 (23%), Positives = 262/613 (42%), Gaps = 59/613 (9%)

Query: 26  PARKWTPL-LEQTLHQLGLRDSLSPSLVARVINPYLLTHHS---------------LALG 69
           P +K   L L+  L Q  LR   SPS +   ++   LTH                 +AL 
Sbjct: 82  PLKKICSLVLDTYLRQPHLR--FSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALS 139

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-----------------------AIDSV 106
           FF WA   P F +    Y  I+ ++SL  + N                       A+D +
Sbjct: 140 FFYWAVGFPKFRYFMRLY--IVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMI 197

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVL 164
           L  ++   + L + V   II    + +  + A +VF+E+  +   + P+ C    ++   
Sbjct: 198 L-DMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEM--SARGVYPDSCTYKYIIVGY 254

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSM 222
             +G +  A +   EM  RG         + I  FCE + + + +    +V K     ++
Sbjct: 255 CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 314

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-- 280
           IN S +    I G CK   V++AF++L+E+     KP+   +  +       G   ER  
Sbjct: 315 INYSSM----ISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT-ERAF 369

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-G 339
            + LK  R     P  + Y   I G   E ++  A+ L E +       + +    LI G
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              + +   A      M  +G  P   T +++   LCKR +++E  ++      N    D
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 489

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +Y +++S  C    + +A   + +M + G  PD+  Y +L+ A CR+++++ ++KL+D
Sbjct: 490 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFD 549

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           ++   G +   +TY  +I  +    ++  A++ F  M + G APD+ +Y +L+ GLC+E+
Sbjct: 550 EVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKES 609

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579
            L  A ++++  ++  +        T     C+   F  A  +L  L+  L     H  L
Sbjct: 610 RLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHT-L 668

Query: 580 LKSLADAREVEMA 592
           ++ L   ++V +A
Sbjct: 669 IRKLCCEKKVALA 681


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 128/534 (23%), Positives = 226/534 (42%), Gaps = 46/534 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  I+  L   R+ +    + K++K   +  D   Y  +I    +    +KA  +FNE
Sbjct: 122 VSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNE 181

Query: 145 ----------------VKFNCEDIGPEICNSLLAVLASDGYI------------------ 170
                           +   C++      N LL V+   G I                  
Sbjct: 182 MLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHR 241

Query: 171 -DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV---RKRENSMINGS 226
              A ++F  M   G     I +G  +   C+   +   L +  E+     R       +
Sbjct: 242 ISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPT 301

Query: 227 VIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           +I+  +II G CK +R +EA ++  E++ +   PD I+Y  +   F L G   + + +  
Sbjct: 302 LISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFN 361

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
           +   +G+ P        I  L  + ++ EA +L EV++      D      L+ G     
Sbjct: 362 EMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKH 421

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--SANDYFTDME- 401
               A   F  M + G +P + T + L K LC+       +E++K +    + Y  + + 
Sbjct: 422 RISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 481

Query: 402 ---SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
              SY++++  LC  GR  EA  + +EMK  G+ PDV  Y SL+   CR    + AK L+
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G   ++ T+++LI    + G++  A  L   M+++G  P+  TYT+L++GLC  
Sbjct: 542 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMN 601

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
             +  A ++F K      +       T M  LC+ G+   A +L + + SD G 
Sbjct: 602 DRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 655



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 207/488 (42%), Gaps = 56/488 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY  I+  L   R+ +    + K++K   I  D   Y  +I         +KA  +FNE
Sbjct: 303 ISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNE 362

Query: 145 VKFNCEDIG--PEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +     D+G  P++  S  L+ +L   G +  A K+ + +  RG     +     +   C
Sbjct: 363 ML----DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLC 418

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----- 255
              ++ +   +  +++K    M N    A L+  G C+   ++ A ++   +        
Sbjct: 419 MKHRISKATQLFLKMQKL-GCMPNVVTCATLM-KGLCQSGNIKIALELHKNMLSDTSPYG 476

Query: 256 -ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
             CKP+ I+Y I+ +     G   E   + K+ + LGV P    Y   I G       C 
Sbjct: 477 INCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGF------CR 530

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                    SGK+                   + A   FN M++ G  P ++T S L   
Sbjct: 531 ---------SGKW-------------------KDAKYLFNEMVDIGVQPDVTTFSVLIDM 562

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K  E  E+ +V+       +  +Y  +V  LC + R+ EA  +  +M++ G  PD
Sbjct: 563 LCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPD 622

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSG-NLK----TYNILISKFSEVGEIEG 488
           V  Y +LM+  C+   ++ A +L  +M + +G  G N K    +Y+I+I    + G  + 
Sbjct: 623 VVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE 682

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  LF  M   GV P+  +YTSL+ G C+   L+ A  +FN+ V+  V L     S  + 
Sbjct: 683 ARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIH 742

Query: 549 SLCRRGHF 556
             C+ G  
Sbjct: 743 GFCKEGQI 750



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 225/503 (44%), Gaps = 31/503 (6%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVN---------KITLDSSVYRFIIPSLIQGKNT 135
           ++Y +++K L  + +IN I   L Q  +N         K TL S  Y  II  L + +  
Sbjct: 81  IAYGTLMKGLCQTGKIN-IALHLHQEMLNDTSQYGIKCKPTLVS--YSIIIDGLCKDRRE 137

Query: 136 QKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            +A  +F E+K   + + P++ +  SL+      G  + A  +F+EM   G+        
Sbjct: 138 DEARELFKEMKA--QGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSS 195

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           + I   C+  K+ +   +L+ + +R    I   V    +I G C   R+ EA ++   ++
Sbjct: 196 MLIDILCKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMKHRISEATRLFMSMQ 253

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFE----REVVLKKKRKLGVA--PRTNDYREFILGLI 307
              C+PD IAY  + +     G++       + +L    + G+   P    Y   I GL 
Sbjct: 254 KLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 313

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            +RR  EA+EL + + +     D      LI G   S     A   FN M++ G  P ++
Sbjct: 314 KDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVT 373

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T S L   LCK+ K  E  ++ +V+       D+ +   +V  LC   R+ +A  +  +M
Sbjct: 374 TSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKM 433

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------FASGCSGNLKTYNILISKF 480
           ++ G  P+V    +LM+  C+   ++ A +L   M      +   C  N  +Y+I+I   
Sbjct: 434 QKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGL 493

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            + G  + A  LF  M   GV PD  +YTSL+ G C+    + A  +FN+ V+  V    
Sbjct: 494 CKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDV 553

Query: 541 SILSTFMISLCRRGHFLVATKLL 563
           +  S  +  LC+ G  + A +LL
Sbjct: 554 TTFSVLIDMLCKEGKVIEANELL 576



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 181/397 (45%), Gaps = 15/397 (3%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M H G++      GV I  FC+  K+ +   +L+ + +R    I   V    +I G C  
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQR--GCILDIVTYSTLIKGLCMK 58

Query: 240 KRVEEAFKVLDELRIRECKPDFIAY----RIVAEEFKLMGSVFEREVVLKKKRKLGV--A 293
            R+ EA ++   ++   C+PD IAY    + + +  K+  ++   + +L    + G+   
Sbjct: 59  HRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCK 118

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVF 352
           P    Y   I GL  +RR  EA+EL + + +     D     +LI G   S     A   
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           FN M++ G    ++T S L   LCK  K  E  E+ +V+       D+ +Y+ ++  LC 
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 238

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------FASGC 466
             R+ EA  +   M++ G  PD   Y +LM+  C+   +  A +L  +M      +   C
Sbjct: 239 KHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKC 298

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              L +Y+I+I    +    + A  LF  M  +G+ PD  +YT+L+ G C     + A  
Sbjct: 299 KPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 358

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +FN+ ++  +    +  S  +  LC++G  + A KLL
Sbjct: 359 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLL 395



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 189/423 (44%), Gaps = 11/423 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL----SMLD 213
           ++L+  L     I  A ++F  M   G     I +G  +   C+  K+   L     ML+
Sbjct: 49  STLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN 108

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           +  +         V   +II G CK +R +EA ++  E++ +   PD I+Y  +   F  
Sbjct: 109 DTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCR 168

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G   + + +  +   +G+          I  L  E ++ EA EL EV++     +D   
Sbjct: 169 SGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVT 228

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK-VL 391
            + LI G         A   F  M + G  P       L K LC+    +  +++++ +L
Sbjct: 229 YSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEML 288

Query: 392 SANDYF-----TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           +    +       + SY++++  LC   R  EA  + +EMK +G+ PDV  Y +L+   C
Sbjct: 289 NDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFC 348

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
                  AK L+++M   G   ++ T ++LI    + G++  A +L   ++++G  PD  
Sbjct: 349 LSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVV 408

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           T T+L++GLC +  +  A ++F K      M      +T M  LC+ G+  +A +L + +
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNM 468

Query: 567 SSD 569
            SD
Sbjct: 469 LSD 471



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 46/454 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++K L +  +I+    +   +K      D+  Y  ++  L Q      A  +  E
Sbjct: 46  VTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQE 105

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +  +    G +   +L++       L  D   D A ++F EM  +G+    I +   I  
Sbjct: 106 MLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHG 165

Query: 199 FCENAKLGQVLSMLDE---VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           FC + K  +   + +E   V  R +   +  +I +L     CK  +V EA ++L+ +  R
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDIL-----CKEGKVIEANELLEVMIQR 220

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C  D + Y  + +   +   + E   +    +KLG  P    Y   + GL     I  A
Sbjct: 221 GCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTA 280

Query: 316 KELGEVIV--SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            +L + ++  +G++ I                                 PTL + S +  
Sbjct: 281 LQLHQEMLNDTGRYGIKCK------------------------------PTLISYSIIID 310

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  + DE  E++K + A     D+ SY  ++   C SG+  +A  +  EM   G+ P
Sbjct: 311 GLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQP 370

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV+  + L++  C++  +  A KL + +   GC  ++ T   L+        I  A +LF
Sbjct: 371 DVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLF 430

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             M + G  P+  T  +L++GLCQ  N++ A E+
Sbjct: 431 LKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 192/425 (45%), Gaps = 22/425 (5%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDE 179
           Y  +I  L Q     +A  +F   K N  ++ P+  +   L+  LA  G +++A  +F +
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFE--KMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQK 348

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           + H GV  ST+ +   I   C          +  ++ +R        V   ++I   CK 
Sbjct: 349 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR--GCPPSPVTYNVMIDASCKR 406

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             +EEA  ++ ++      PD + Y  V +       V E  ++  +  +LG  P    +
Sbjct: 407 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSH 466

Query: 300 REFILGLIVERRI---CEAKELGEVIVSGKFTIDD----DVL--NALIGSVSSI----DP 346
              ILGL  + +I   C+  +L E     K   DD    DV+  + LI  + SI    D 
Sbjct: 467 NTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 526

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R        M+++   PT+ T + L   LCK  +  E  EV   + ++    D+ +YN +
Sbjct: 527 RH---LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 583

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V   C +G+   A  ++ +M  +GL P+V  Y +L+   C+ + L  A  ++ QM +SGC
Sbjct: 584 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 643

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + NL TY  LI  F   G+++G L+LF  M+  G++PD   Y +L   LC+      A E
Sbjct: 644 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 703

Query: 527 VFNKS 531
           +  + 
Sbjct: 704 ILREG 708



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 129/539 (23%), Positives = 231/539 (42%), Gaps = 60/539 (11%)

Query: 82  HSPLS--YHSILKSLSLSRQINAIDSVLKQVKVNKITL-DSSVYRFIIPSLIQGKNTQKA 138
           HSP    Y+ ++ SLS  ++  A+  ++ QV V++    DS  +  I+  L +     +A
Sbjct: 40  HSPYPDVYNVLIDSLSKRQETEAVKKMV-QVMVDRGCFPDSFTFTTILCGLCKAGKMDEA 98

Query: 139 FSVFNEVK---------------------------FNCEDIGPEICNS-----LLAVLAS 166
             V +E++                           F   +I P + NS     ++  L  
Sbjct: 99  ELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP-VANSSAYNIVVVALCK 157

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              +D+AL++   MS + +  +       +    ++ ++ + L +  E R RE  ++  +
Sbjct: 158 AARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENR-REPCLVTLN 216

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V+    + GFC   +V++A ++L  +   EC PD ++Y  V +     G V E  V L  
Sbjct: 217 VL----LEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRV-EEAVRLFG 271

Query: 287 KRKLGVAPRT-------NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
            R+L  +  +         Y   ILGL    RI EA ++ E +     + D      LI 
Sbjct: 272 DRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILID 331

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            ++       A   F  ++  G  P+    ++L   LC  N  D+  E++  ++      
Sbjct: 332 GLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP 391

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
              +YNVM+   C  G L EA  +I++M   G  PDV  YN++M+  C+   +  A  L+
Sbjct: 392 SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 451

Query: 459 DQMFASGCSGNLKTYNILI------SKFSEV---GEIEGALRLFHNMLEKGVAPDATTYT 509
           ++M   GC+ N +++N +I      SK  +    G+++ A RL   M + G  PD  TY+
Sbjct: 452 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYS 511

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +L+ GLC    +  A  +    V           +T +  LC+ G    A ++L  + S
Sbjct: 512 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 570



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 19/350 (5%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+ G CK  +++EA  V+DE+R R   P F     +A E  L GS+ ER   L     L 
Sbjct: 85  ILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSM-ERAFQL-----LE 138

Query: 292 VAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA-LIGSVSSIDPRS 348
           + P  N   Y   ++ L    R+ +A EL   +   +  +    L++ L+G + S     
Sbjct: 139 IMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDE 198

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  +    E  R P L TL+ L +  C R + D+  E+ + +   +   D  SY  ++ 
Sbjct: 199 ALQVYR---ENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLD 255

Query: 409 FLCTSGRLREAYGVIQEMK------RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            LC +GR+ EA  +  + +           P +  YN ++   C+ D +  A +++++M 
Sbjct: 256 GLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMN 315

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
               S +  +Y ILI   ++ G++  A  LF  +L  GV P    YTSL+ GLC   +  
Sbjct: 316 ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 375

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            A E+F          +    +  + + C+RG    A  L++ +  D GH
Sbjct: 376 DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED-GH 424



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 150/393 (38%), Gaps = 53/393 (13%)

Query: 83  SPLSYHSILKSLSLSRQI--NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           SP++Y+ ++ + S  R +   A D + K ++   +  D   Y  ++  L +    ++A  
Sbjct: 392 SPVTYNVMIDA-SCKRGMLEEACDLIKKMIEDGHVP-DVVTYNTVMDGLCKSSRVEEALL 449

Query: 141 VFNEV-KFNC-------EDIGPEICN-SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +FNE+ +  C         I   +C  S +      G +D A ++   M+  G     + 
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   I   C  A++     +L+++ KR+       V    +IHG CK  R++EA +VLD 
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPT--VVTQNTLIHGLCKAGRIKEAREVLDA 567

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +      PD + Y  +       G       +L      G+AP    Y   + GL    R
Sbjct: 568 MVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 627

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + EA  +   + S     +     ALI G  S+      +  F  M+  G  P       
Sbjct: 628 LPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGT 687

Query: 371 LSKNLCKRNKS----------------------------DELVEVYKVLSANDYFTDM-- 400
           L+  LCK  +S                            D L+E  K+  A  +  DM  
Sbjct: 688 LAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVR 747

Query: 401 -------ESYNVMVSFLCTSGRLREAYGVIQEM 426
                  E    +V+ LC SG+  EA  V++E+
Sbjct: 748 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M E+   P     + L  +L KR +++ + ++ +V+     F D  ++  ++ 
Sbjct: 29  AVKIFSLM-EECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILC 87

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G++ EA  V+ EM+ + + P  +  + L    C    +  A +L + M  +    
Sbjct: 88  GLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVA---- 143

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N   YNI++    +   ++ AL L   M EK +   A +  S+L GL     +  A +V+
Sbjct: 144 NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
            ++     ++    L+  +   C RG    A +LLR +  +    D  S+  +L  L  A
Sbjct: 204 RENRREPCLVT---LNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKA 260

Query: 587 REVEMAI 593
             VE A+
Sbjct: 261 GRVEEAV 267



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M ++G+ P    + S+++  C       A K++  M     S     YN+LI   S+  E
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECH-SPYPDVYNVLIDSLSKRQE 59

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            E   ++   M+++G  PD+ T+T++L GLC+   +  A  V       D M +R I   
Sbjct: 60  TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVM------DEMRSRMIPPY 113

Query: 546 FMIS------LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWI 599
           F  S      LC RG    A +LL  +   + +S ++ I++ +L  A  V+ A+E  + +
Sbjct: 114 FATSSFLAHELCLRGSMERAFQLLEIMP--VANSSAYNIVVVALCKAARVDDALELARTM 171

Query: 600 QESS-PTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
            E   P     + + L   + S    E + +     +E CL
Sbjct: 172 SEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCL 212


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 188/430 (43%), Gaps = 43/430 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++A     G +D A ++  EM    VE     +   I   C   +    L++LDE+ +
Sbjct: 4   NAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLR 60

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    +   V   +++   CK    ++A K+LDE+R + C PD + Y +V       G V
Sbjct: 61  RR--CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNA 336
            +    LK     G  P T  Y   + GL    R  +A+EL GE                
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE---------------- 162

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                              M +KG  P + T + L   LC++   +  +EV + +     
Sbjct: 163 -------------------MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 203

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +  SYN ++   C   ++ +A   +  M  +G  PD+  YN+L+ A CR   +  A +
Sbjct: 204 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 263

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L  Q+   GC+  L +YN +I   ++ G+ + AL L + M+ KG+ PD  TY+++  GLC
Sbjct: 264 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 323

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSD 574
           +E  ++ A   F K  +  +     + +  ++ LC+R     A  L   +  +  + +  
Sbjct: 324 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNES 383

Query: 575 SHVILLKSLA 584
           ++ IL++ LA
Sbjct: 384 TYTILIEGLA 393



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 115/272 (42%), Gaps = 38/272 (13%)

Query: 402 SYNVMVS--------------------------------FLCTSGRLREAYGVIQEMKRK 429
           +YN MV+                                 LC  GR   A  V+ EM R+
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRR 61

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
              PDV  Y  L+EA C+    + A KL D+M   GC+ ++ TYN++++   + G ++ A
Sbjct: 62  RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDA 121

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           +    N+   G  P+  +Y  +L+GLC     + A E+  +             +  +  
Sbjct: 122 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF 181

Query: 550 LCRRGHFLVATKLLRGLS--SDLGHSDSHVILLKSLADAREVEMAIEHIKWI--QESSPT 605
           LCR+G    A ++L  +       +S S+  LL +    ++++ A+  +  +  +   P 
Sbjct: 182 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD 241

Query: 606 MLQEISAELFASLSSSSYPEPILLLLHALQEK 637
           ++   +  L  +L  S   +  + LLH L++K
Sbjct: 242 IVSYNT--LLTALCRSGEVDVAVELLHQLKDK 271


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 136/631 (21%), Positives = 263/631 (41%), Gaps = 65/631 (10%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVIN-----P 58
           RPA  +A+  +  I++   R    R+W        ++      LSPS+ A  +      P
Sbjct: 9   RPAAAVASTSTPDIVAELGRVLSTRRW--------NKGSAYKRLSPSVTAAHVADLFRAP 60

Query: 59  YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI------------------ 100
                 + AL FF W +++P F H+  S+ ++L+ L+  R                    
Sbjct: 61  VSPLDPATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAE 120

Query: 101 ---NAIDSV--LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
               A+D++  +++V   ++ L    Y   + SL++   T+    +++ +    E + P+
Sbjct: 121 DVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQ--EGLLPD 178

Query: 156 IC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLS 210
               N+++      G +  A + F  +   G++  T      +  +C  + L +   +L 
Sbjct: 179 TVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLM 238

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           M+  +  R N          ++I G  + + V EA  ++  +    C  +   Y ++ + 
Sbjct: 239 MMPLMGCRRNE-----YSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKG 293

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G + +   +L +    GV P    Y   I G     R+ +A  +  ++       D
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           D   N+LI  +       A    N  I +G  PT+ T +NL    CK  + D+ + V   
Sbjct: 354 DWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN 413

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +++   D+++Y V+++ L    RL+EA   + EM   GL P+V  Y S+++  C+  +
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGM 473

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +++  M   GC  N  TY  LI    +  ++  A+ L   M E G+ P    YT+
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTT 533

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH------FLV------ 558
           L++G C++     AF +F     + +       +    +LC+ G       FLV      
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVL 593

Query: 559 ----ATKLLRGLSSDLGHSDSHVILLKSLAD 585
                T L+ G S   G++D   +L++ + +
Sbjct: 594 TKVTYTSLVDGFSK-AGNTDFAAVLIEKMVN 623



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 191/513 (37%), Gaps = 102/513 (19%)

Query: 122 YRFIIPSLIQGKNTQKAFS-VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           Y  +I  L + +  ++A   VF  V+  C  +   +   L+  L  +G I +A  + DEM
Sbjct: 252 YTILIQGLYEARCVREALVLVFMMVQDGCS-LNLHMYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSM---------------------------LD 213
             RGV  S   +   I  +C++ ++   L +                           LD
Sbjct: 311 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLD 370

Query: 214 EVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           E  +  N  I       +I     I+G+CK +R+++A +V   +    CK D  AY ++ 
Sbjct: 371 EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLI 430

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                   + E +  L +    G+AP    Y   I G      +  A E+ +++      
Sbjct: 431 NVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCH 490

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            +     +LI G +       A+     M E G  P +   + L +  CK+++ D    +
Sbjct: 491 PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRL 550

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG-------------------------- 421
           ++++  N    D ++YNV+   LC SGR  EAY                           
Sbjct: 551 FEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGN 610

Query: 422 ------VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL----- 470
                 +I++M  +G   D+  Y+ L++A C++  L  A  + DQM  SG   N+     
Sbjct: 611 TDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI 670

Query: 471 ------------------------------KTYNILISKFSEVGEIEGALRLFHNMLEKG 500
                                          TY + IS + ++G+IE A  L   M   G
Sbjct: 671 IISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 730

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           V PD  TY   + G      +  AF    + V+
Sbjct: 731 VTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVD 763



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 118/605 (19%), Positives = 228/605 (37%), Gaps = 110/605 (18%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            FT + +++ +++     + +I+    V   +  +   LD   Y  +I  LI+    ++A
Sbjct: 383 GFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEA 442

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
               NE+  N       I  S++      G +  AL++F  M H G   +   +G  I+ 
Sbjct: 443 KETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYG 502

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             ++ KL + ++++   + +E+ +  G +    +I G CK    + AF++ + +      
Sbjct: 503 LIQDKKLHKAMALI--TKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLT 560

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG-----------LI 307
           PD  AY ++ +     G   E    L +K   GV      Y   + G           ++
Sbjct: 561 PDEQAYNVLTDALCKSGRAEEAYSFLVRK---GVVLTKVTYTSLVDGFSKAGNTDFAAVL 617

Query: 308 VERRI------------------CEAKELGEVI-------VSG------KFTIDDDVLNA 336
           +E+ +                  C+ K+L E +       VSG       +TI   +++ 
Sbjct: 618 IEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI---IISE 674

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           +I        +S    FN MI  G  P+ +T +    + CK  + +E   +   +  +  
Sbjct: 675 MIKEGKHDHAKS---LFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGV 731

Query: 397 FTDMESYNVMVS----------------------------------------------FL 410
             D+ +Y++ ++                                              ++
Sbjct: 732 TPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYI 791

Query: 411 CTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            TSG      L   + +++ M + GL+P V  Y+S++   C+   L  A  L D M    
Sbjct: 792 DTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKA 851

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            S N + Y +LI    ++      +    +M+E G  P   +Y  L+ GLC E +   A 
Sbjct: 852 ISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAK 911

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH----SDSHVILLK 581
            +F   +  D              L + GH    ++LL  +  D  H    S+S+ +L  
Sbjct: 912 SLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAM--DNRHCRIDSESYSMLTD 969

Query: 582 SLADA 586
           S+ +A
Sbjct: 970 SIREA 974


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 192/437 (43%), Gaps = 45/437 (10%)

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           GP++   N+++A     G +D A ++  EM    VE     +   I   C   +    L+
Sbjct: 123 GPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALA 179

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +LDE+ +R    +   V   +++   CK    ++A K+LDE+R + C PD + Y +V   
Sbjct: 180 VLDEMLRRR--CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
               G V +    LK     G  P T  Y   + GL    R  +A+EL GE         
Sbjct: 238 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE--------- 288

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                                     M +KG  P + T + L   LC++   +  +EV +
Sbjct: 289 --------------------------MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE 322

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +       +  SYN ++   C   ++ +A   +  M  +G  PD+  YN+L+ A CR  
Sbjct: 323 QIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSG 382

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +L  Q+   GC+  L +YN +I   ++ G+ + AL L + M+ KG+ PD  TY+
Sbjct: 383 EVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 442

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           ++  GLC+E  ++ A   F K  +  +     + +  ++ LC+R     A  L   +  +
Sbjct: 443 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 502

Query: 570 --LGHSDSHVILLKSLA 584
             + +  ++ IL++ LA
Sbjct: 503 GCMPNESTYTILIEGLA 519



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 108/273 (39%), Gaps = 16/273 (5%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP-- 84
           A +W    E+ + ++G +    P++V   +    L    L         Q P +  +P  
Sbjct: 276 AERWEDA-EELMGEMG-QKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 333

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           LSY+ +L +    ++++   + L  +       D   Y  ++ +L +      A  + ++
Sbjct: 334 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 393

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K   +   P +   N+++  L   G    AL++ +EM  +G++   I +       C  
Sbjct: 394 LKD--KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 203 AKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            ++   +    +V+    R N+++  +     II G CK +    A  +   +    C P
Sbjct: 452 DRIEDAIRAFGKVQDMGIRPNTVLYNA-----IILGLCKRRETHSAIDLFAYMIGNGCMP 506

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +   Y I+ E     G + E   +L +    GV
Sbjct: 507 NESTYTILIEGLAYEGLIKEARDLLDELCSRGV 539


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/496 (21%), Positives = 217/496 (43%), Gaps = 5/496 (1%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           FN      N T     ++ IL SL  ++  +   S+ +Q+++N I  D   +  +I    
Sbjct: 48  FNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFS 107

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           Q      +FS+F ++            N+L+  L   G+I  AL   D++  +G     +
Sbjct: 108 QLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQV 167

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVL 249
            +G  I   C   K+G++ + L  +++ +  ++   +V+  +II   CK K V +AF + 
Sbjct: 168 SYGTLINGLC---KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLY 224

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            ++  +   PD   Y  +   F  +  +     +  K +K  + P    +   + G   E
Sbjct: 225 SQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKE 284

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTL 368
            ++ +AK +  +++      D    N+L+    SI+    A   F+ M   G +  +   
Sbjct: 285 GKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIY 344

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +    CK    DE + +++ +       ++ +Y+ ++  LC  GR+  A  ++ EM  
Sbjct: 345 TTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHD 404

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G  P++  Y+S+++A C+   +  A  L   +   G   ++ TY ILI    + G +E 
Sbjct: 405 RGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLED 464

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  +F ++L KG   D   YT +++G C +     A  + +K  ++  +         ++
Sbjct: 465 AQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVIL 524

Query: 549 SLCRRGHFLVATKLLR 564
           SL  +     A KLLR
Sbjct: 525 SLFEKDENDTAEKLLR 540


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/529 (22%), Positives = 216/529 (40%), Gaps = 48/529 (9%)

Query: 42  GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           G   +++P +  RV+    +    +A  FF WA  +P F H+  +   +L +   +++  
Sbjct: 36  GYASTVTPEVAGRVLQQ--VEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHE 93

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
               +LK+           +     P               NE+ +           +++
Sbjct: 94  EAHRLLKE----------ELEPLCFP---------------NEIMYT----------TVI 118

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
                 G +D A ++ DEM  RGV+   +     I   C   ++ + L       K    
Sbjct: 119 NGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF----KSMGE 174

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR-----ECKPDFIAYRIVAEEFKLMG 275
             + +VI    +++G CK  R++EA ++ D++  R      C+PD I+Y  V +      
Sbjct: 175 ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ 234

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V +     K+ R +G AP    Y   I GL    R  E  EL   +    F I+    N
Sbjct: 235 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFN 294

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           A++ ++   D +  A  FF  +++ G+ P + T +     LCK  + DE   +   +  +
Sbjct: 295 AMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVES 354

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y+ ++   C +GR+ +A  V   M      P    + +L+         R A
Sbjct: 355 KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREA 414

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ + M  +G    L+TYN+L+        +E AL ++H M  K   PD  TY  L++ 
Sbjct: 415 FRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQC 474

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           LC+   +  A E  +     +V+   +I    +  LC++G    A  +L
Sbjct: 475 LCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVL 523



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 197/458 (43%), Gaps = 23/458 (5%)

Query: 85  LSYHSILKSLSLSRQINA----IDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAF 139
           ++Y++++  L  + +I+      D + K+ + +     D   Y  +I +L + +   KA+
Sbjct: 181 ITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAY 240

Query: 140 SVFNEVK-FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             F  ++   C    P +   +SL+  L         L++   M  +G   + I F   +
Sbjct: 241 EYFKRMRAVGC---APNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAML 297

Query: 197 ---WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
              WK  E  K  Q    L +  K+ N      V   + +HG CK  RV+EA+++L E+ 
Sbjct: 298 HALWKNDEQEKACQFFERLLKSGKKPNV-----VTYNVAVHGLCKAGRVDEAYRILLEMV 352

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
             +  PD I Y  + + F   G + + + V  +       P    +   + G    ++  
Sbjct: 353 ESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSR 412

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLS 372
           EA  + E +V+  F       N L+  V   D   SA+  ++ M  K R P  +T + L 
Sbjct: 413 EAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLI 472

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           + LC+  + DE  E   V+ A++   +    + +V  LC  G + EA  V+  +   G  
Sbjct: 473 QCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQ 532

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P    +  L+E          A KL   + + G   +  TY++ +++  + G+ + A+ +
Sbjct: 533 PLGETFKILVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEV 589

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              M+ KGV PD  TY ++L  LC    +++A   F K
Sbjct: 590 IEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEK 627



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 10/351 (2%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G +D A ++  EM    V    I +   I  FC+  ++ +   +    R   +  I
Sbjct: 335 LCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVF--TRMMVHECI 392

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V  + ++HGF + K+  EAF+V +++      P    Y ++ +      SV     +
Sbjct: 393 PHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEI 452

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-- 341
             K ++    P  N Y   I  L   RR+ EAKE  +V+ +     +  + +AL+  +  
Sbjct: 453 YHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCK 512

Query: 342 -SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +D   A    + ++E G  P   T   L + L  R K +      K+L +  +  D 
Sbjct: 513 QGEVD--EACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEA---ASKLLRSPGFVADA 567

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y++ V+ +C +G+  EA  VI++M  KG+ PD   Y +++ + C  D +  A   +++
Sbjct: 568 ATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEK 627

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           M + GC+  L TY +LI +       + A R+F  M+  G  P A T  +L
Sbjct: 628 MASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 143/335 (42%), Gaps = 6/335 (1%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y SI+     + +++  D V  ++ V++       +  ++    + K +++AF 
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V  ++       G +  N L+  +     +++AL+++ +M  +  +     +   I   C
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLC 476

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              ++ +    LD V + +N + NG++   L+    CK   V+EA  VLD +    C+P 
Sbjct: 477 RARRVDEAKEFLD-VMEADNVVPNGAICHALV-EVLCKQGEVDEACSVLDNVVEVGCQPL 534

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              ++I+ EE  L     + E   K  R  G       Y   +  +    +  EA E+ E
Sbjct: 535 GETFKILVEELYLRK---KWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIE 591

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            +V      D+    A++ S+  +D   SAI  F  M  +G  P L T + L    C  +
Sbjct: 592 QMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSAD 651

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            +DE   +++ + A  +    ++   + S L  +G
Sbjct: 652 MADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 686



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   N  T  +L++ F +    E A RL    LE    P+   YT+++ G C+   +  A
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG-HSDSHVILLKSL 583
           FE+ ++     V +   + ST +  LCR+G    A +  + +  +   +  ++  ++  L
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGL 190

Query: 584 ADAREVEMAIE 594
             A  ++ A+E
Sbjct: 191 CKANRIDEALE 201


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 210/482 (43%), Gaps = 40/482 (8%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ +L  L+   +I  ++S   ++    I  D   +  +I +L + +  + A  +  E+ 
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMS 223

Query: 147 FNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            +C D+ P+     +L+     +G I+ AL++   MS  G   +++   V I  +C+  +
Sbjct: 224 -SC-DVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGR 281

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G  L  + +  +  +      V     ++G C+   V+ A KVL  +    C+PD   Y
Sbjct: 282 VGDALGYIQQ--EIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTY 339

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             V       G + E + ++ +    G  P T  +   I+ L  E ++ EA +L      
Sbjct: 340 STVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAR---- 395

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
            + T+                             KG  P + T + L   LCK       
Sbjct: 396 -ELTV-----------------------------KGLSPNVYTFNILINALCKVGDPHLA 425

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V +++ + ++    D  +YN+++  LC+SG+L +A  +++EM+  G       YN++++ 
Sbjct: 426 VRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  A++++DQM  +G   N  T+N LI        I+ A  L   M+ +G+ P+
Sbjct: 486 LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY S+L   C++ N+  A ++      +   +     +T +  LC+      A KLLR
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLR 605

Query: 565 GL 566
           G+
Sbjct: 606 GM 607



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/585 (21%), Positives = 249/585 (42%), Gaps = 26/585 (4%)

Query: 23  RTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH 82
           R R   K+    EQ      LR+   P    R++N  L              ++    T 
Sbjct: 43  RARFQLKFAAGSEQERLVTALREQADPEAALRMLNSAL--------------ARDDGLTP 88

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS-V 141
           S   Y  I++ L  +   + +  ++ +++     +   + +  I S  + +    AF  V
Sbjct: 89  SRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLV 148

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            N++         E+ N LL VLA    I      + EMS +G+E   + F   I   C 
Sbjct: 149 SNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCR 208

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             +    + ML+E+   +  +         ++ GF +   +E A ++   +    C P  
Sbjct: 209 ARQARTAVLMLEEMSSCD--VAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTS 266

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGE 320
           +   ++   +  +G V +    ++++   G  P    +  F+ GL     +  A K LG 
Sbjct: 267 VTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGL 326

Query: 321 VIVSG---KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           ++  G          V+N L  +   ++    IV  N M++ G +P  +T + L   LC 
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNN-GELEEAKGIV--NQMVDSGCLPDTTTFNTLIVALCT 383

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            N+ +E +++ + L+      ++ ++N++++ LC  G    A  + +EMK  G  PD   
Sbjct: 384 ENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVT 443

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN L++  C    L  A  L  +M  SGC  +  TYN +I    +   IE A  +F  M 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             G+  +A T+ +L++GLC    +  A E+ ++ ++  +       ++ +   C++G+  
Sbjct: 504 VTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNIS 563

Query: 558 VATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
            A  +L+ ++++    D  ++  L+  L  AR  + A++ ++ ++
Sbjct: 564 KAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMR 608


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/506 (22%), Positives = 236/506 (46%), Gaps = 23/506 (4%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           S L ++K +K T   +VY  +I  L + +  ++A S++++V      +  + CN LL VL
Sbjct: 103 SELSRLKSSKFT--PNVYGELIIVLCKMELVEEALSMYHKVG---AALTIQACNVLLYVL 157

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
              G  +   ++++EM   G+  S I FG  I   C    L +   M DE+R +   ++ 
Sbjct: 158 VKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVK--GIVP 215

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             ++  ++I G C   ++EEA  +   +R     P+   Y  + + +  + +  +   + 
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY 275

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           +     G+ P    +   I GL     +  A+ L   ++    T +  V N+LI +   +
Sbjct: 276 QDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKV 335

Query: 345 DPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
              S  +     +E+  V P + T S L + LC  ++++E   +++ ++      +  +Y
Sbjct: 336 GDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTY 395

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++   C  G++ +A  +  +M   G++P+V  +++L++  C+   L+ A  ++ +M  
Sbjct: 396 NSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVI 455

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
              S ++ TY  +I    + G ++ AL+L+ +ML+ G+ P+  T + LL+GLC++  +  
Sbjct: 456 KSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISD 515

Query: 524 AFEVFNKSV-------NHDV-----MLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDL 570
           A E+F + +       N D       L   +  T +I  LC+ G F  A KL   +    
Sbjct: 516 ALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYG 575

Query: 571 GHSDS--HVILLKSLADAREVEMAIE 594
              D   +V++L+ L   + + M + 
Sbjct: 576 LQPDEVIYVVMLRGLFQVKYILMMLH 601


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 236/521 (45%), Gaps = 48/521 (9%)

Query: 88  HSILKSLSLSRQI--NAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           HS L S    +Q+  +A+D +L Q++ +  I  D+ VY  ++  L++G   +   SV++E
Sbjct: 113 HSFLDSYE-GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSE 171

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      I P++   N+L+  L     +  A+ M +EMS RGV      F   +  F E 
Sbjct: 172 M--GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +   L +  + R  E       V   ++I+G+CK  RVE+A   + +      +PD I
Sbjct: 230 GSIEAALRV--KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y                                     F+ GL     +  A ++ +V+
Sbjct: 288 TYNT-----------------------------------FVNGLCQNDHVGHALKVMDVM 312

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V      D    N ++  +  +     A    N M+++G +P ++T + L   LC  N+ 
Sbjct: 313 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRL 372

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E +++ + ++      D+ ++N++++ LC  G    A  + +EMK  G  PD   YN+L
Sbjct: 373 EEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C    L  A  L   M ++GC  +  TYN +I    +   IE A  +F  M  +G+
Sbjct: 433 IDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI 492

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           + +A T+ +L++GLC++  +  AFE+ N+ ++  +       ++ +   C++G    A  
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 562 LLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
           +L  ++++    D  ++  L+  L  A   ++A++ ++ ++
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 226/523 (43%), Gaps = 21/523 (4%)

Query: 66  LALGFFNWASQQ-PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           L L F    S   PNF HS  S     H +++   LS     I  ++++  V+++ +  S
Sbjct: 116 LGLKFIGLVSYHFPNFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVES 175

Query: 121 -------------VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
                        +Y  ++ + +Q K  ++    F  ++     +    CN LL  L   
Sbjct: 176 LISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRT 235

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G++D A +++ E+   G+E +     + +   C++ K   V+  L ++  +   +    V
Sbjct: 236 GWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK--GVFADIV 293

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I+ +C+   VEEAF++L+    R  +P  + Y  +      +G     + VL + 
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDP 346
            +LG+ P    Y   ++ +     I EA+E+ + +       D    ++LIG ++ +   
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A++ F  M   G VP     + L    C+     + +++   + A   F D+ +YN  
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC      +A  +  EM  +G+ PD   + +L+   C++  +  A  L++ M  +  
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TYN LI  F + GE+  A  L+ +M+ K + PD  +Y ++L G C    L  A  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           + ++ +   +       +T +   CR G    A + L  + S+
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 188/415 (45%), Gaps = 17/415 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+     +G ++ A ++ +  S RG+E   + +   ++  C+  K  +   +L E+ +
Sbjct: 296 NTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ 355

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                 N +    L++   C+   + EA ++ DE+  R   PD +++  +       G +
Sbjct: 356 L-GLTPNAATYNTLLVE-ICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF---TIDDDV 333
           ++  +  ++  + G+ P    Y   I G      + +A ++  E++  G F      +  
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L       D   A + FN M+E+G VP   T + L +  CK    D+ + +++ +  
Sbjct: 474 LNGLCKKKMFAD---ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR 530

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
            +   D  +YN ++   C +G +  A  +  +M RK + PD   Y +++   C   LL  
Sbjct: 531 TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPE 590

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L DQM   G   NL T N LI  +   G++  A      M+  G+ PD+ +Y +L++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650

Query: 514 GLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           G  +E NL+ AF + N    + +  +++    IL+ F    C  G    A ++LR
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF----CAEGKMQEAEQVLR 701



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 9/387 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL  +     I  A ++FDEMS RGV    + F   I     N  L Q L    E+ +
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + ++  +VI  ++I GFC+   + +A K+ DE+  R C  D + Y             
Sbjct: 426 --SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMF 483

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            + +++  +  + G+ P    +   I G   +  + +A  L E +V      D    N L
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   + +   A   ++ MI K  +P   +   +    C      E + +   +     
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ + N ++   C SG + +AY  + +M   G+ PD   YN+L++   +E  L  A  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M   G   N+ TYN++++ F   G+++ A ++   M+E G+ PD  TY+SL+ G  
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHV 723

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSIL 543
            + N++ AF        HD ML R ++
Sbjct: 724 SQDNMKEAFRF------HDEMLQRGLV 744



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 195/424 (45%), Gaps = 9/424 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+Y++IL  L    + +    VL ++    +T +++ Y  ++  + +  N  +A  +F+E
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +   + P++ +  SL+ VLA +G++  AL  F EM   G+    + + + I  FC N
Sbjct: 388 M--SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L   L M DE+  R   M    V     ++G CK K   +A  + +E+  R   PDF 
Sbjct: 446 GALSDALKMRDEMLARGCFM--DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  +   +   G++ +   + +   +  + P    Y   I G      +  AKEL + +
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 323 VSGKFTIDDDVL--NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +  K  I D +     L G  SS     A+   + M+EKG  P L T + L K  C+   
Sbjct: 564 IR-KDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             +  E    + +N    D  SYN ++        L +A+ +I EM+++GL  ++  YN 
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++   C E  ++ A+++  +M   G + +  TY+ LI+       ++ A R    ML++G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 501 VAPD 504
           + PD
Sbjct: 743 LVPD 746



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 116/257 (45%), Gaps = 12/257 (4%)

Query: 78  PNFTHSPLSYHSILKSLSLSRQINAIDSVLK-QVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           P+F           K  ++ + +N  +++++  +K +K+T     Y  +I    +     
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT-----YNTLIDGFCKAGEMG 554

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +++++    +DI P+  +  ++L    S G +  AL + D+M  +G+  + +    
Sbjct: 555 RAKELWDDMIR--KDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  +C +  + +    L ++    N +I  S     +I G+ K   +E+AF +++E+  
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMI--SNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R  + + I Y ++   F   G + E E VL+K  ++G+ P    Y   I G + +  + E
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 315 AKELGEVIVSGKFTIDD 331
           A    + ++      DD
Sbjct: 731 AFRFHDEMLQRGLVPDD 747


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 206/465 (44%), Gaps = 31/465 (6%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H+P  + ++ IL SL+  +Q     S+ KQ++V  I  +      +I           +F
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++            N+L+  L   G +  +L   D++  +G +   + +G  +   
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 200 CENAKLGQ------VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           C   K+G+      +L M+++   R N ++  +     II G CK K V EA+ +  E+ 
Sbjct: 126 C---KIGETRCAVKLLRMIEDRSTRPNVVMYNT-----IIDGLCKDKLVNEAYDLYSEMD 177

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            R   PD I Y  +   F L+G +     +L +     + P    Y   I  L  E  + 
Sbjct: 178 ARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVK 237

Query: 314 EAKELGEVIVSGKFTIDDDVLN--------ALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           EAK L  V+   K  I   V+          L+G V     ++A   F+ M++ G  P +
Sbjct: 238 EAKNLLAVMT--KEGIKPGVVTYSTLMDGYCLVGEV-----QNAKQIFHAMVQMGVNPNV 290

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            + + +   LCK  + DE + + + +   +   D  +YN ++  LC SGR+  A  ++ E
Sbjct: 291 YSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE 350

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G   DV  Y SL++A C+   L  A  L+ +M   G    + TY  LI    + G 
Sbjct: 351 MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR 410

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ++ A  LF ++L KG   D  TYT ++ GLC+E     A  + +K
Sbjct: 411 LKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSK 455



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 187/427 (43%), Gaps = 9/427 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QP+     ++ ++++K L L  ++        +V      +D   Y  ++  L +   T+
Sbjct: 77  QPD----TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETR 132

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A  +   ++         + N+++  L  D  ++ A  ++ EM  RG+    I +   I
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLI 192

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           + FC   +L    S+LDE+  +    IN G  I  ++I+  CK   V+EA  +L  +   
Sbjct: 193 YGFCLLGQLMGAFSLLDEMILKN---INPGVYIYNILINALCKEGNVKEAKNLLAVMTKE 249

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             KP  + Y  + + + L+G V   + +     ++GV P    Y   I GL   +R+ EA
Sbjct: 250 GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 309

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L   ++      D    N+LI G   S    SA+   N M  +G+   + T ++L   
Sbjct: 310 MNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 369

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK    D+   ++  +        M +Y  ++  LC  GRL+ A  + Q +  KG   D
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 429

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y  ++   C+E +   A  +  +M  +GC  N  T+ I+I    E  E + A +L H
Sbjct: 430 VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 489

Query: 495 NMLEKGV 501
            M+ KG+
Sbjct: 490 EMIAKGL 496



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 177/383 (46%), Gaps = 11/383 (2%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K K+   A  +  ++ ++  + +F+   I+   F  +G +     VL K  KLG
Sbjct: 16  ILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      + GL ++  + ++    + +V+  F +D      L+  +  I + R A+
Sbjct: 76  YQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAV 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                + ++   P +   + +   LCK    +E  ++Y  + A   F D  +Y  ++   
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGF 195

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+L  A+ ++ EM  K ++P V  YN L+ A C+E  ++ AK L   M   G    +
Sbjct: 196 CLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGV 255

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  VGE++ A ++FH M++ GV P+  +Y  ++ GLC+   +  A  +  +
Sbjct: 256 VTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
            ++ +++      ++ +  LC+ G    A  L+     RG  +D+    ++  LL +L  
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADV---VTYTSLLDALCK 372

Query: 586 AREVEMAIEHIKWIQESS--PTM 606
            + ++ A      ++E    PTM
Sbjct: 373 NQNLDKATALFMKMKERGIQPTM 395



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++ +  +      A  L  QM   G   N  T NILI+ F  +G++  +  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L+ G  PD  T  +L++GLC +  ++ +    +K V     +      T +  LC+
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 553 RGHFLVATKLLR 564
            G    A KLLR
Sbjct: 128 IGETRCAVKLLR 139


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 211/486 (43%), Gaps = 79/486 (16%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           LSY  ++K+L  + +I+   S + ++   K+  D   Y  +I +L + +   +A   F  
Sbjct: 11  LSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFET 70

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +        P++   N+LL  L  +G +  A  +F  M   G+  S + +   I  FC+ 
Sbjct: 71  MP------EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKM 124

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +      +L  +  R+ S    S  +  II+G CK ++V++A+++ +E+++  CKPD +
Sbjct: 125 CQFETAYGLLQLMASRKCSPTVYSYCS--IINGLCKNRKVDQAYQLFEEMKLAGCKPDRV 182

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +                                   I GL V++R+ EAK+L  V+
Sbjct: 183 TYNTL-----------------------------------IHGLCVKQRLHEAKDLLTVM 207

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V   F  D     ALI  + + D  + A V F  M ++G  P L T + L   LC R K 
Sbjct: 208 VENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKL 267

Query: 382 DELVEVYK--------VLSANDYFTDME--------------------SYNVMV--SFLC 411
              + V +        V+     F ++                     + NV+   +F  
Sbjct: 268 RPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFK 327

Query: 412 TSGRLREAYGVIQEMKR---KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             G  +E     +E +R   +G++PD+  YN L++  C+ + L  A+K+   M  SG   
Sbjct: 328 GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPP 387

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TYN L+      G++E    L H M+ +G  PD  T+++L+ GL +   + AA+   
Sbjct: 388 NIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFL 447

Query: 529 NKSVNH 534
           N +++ 
Sbjct: 448 NLAMSQ 453



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 147/379 (38%), Gaps = 62/379 (16%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           ++   C+  ++++A   + E+   +  PD   Y +V +              L K R++ 
Sbjct: 16  LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVID-------------TLCKARRIS 62

Query: 292 VA---------PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
            A         P    Y   + GL    R+ +A  L   +     T  D     LI    
Sbjct: 63  RAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 122

Query: 343 SI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +    +A      M  +   PT+ +  ++   LCK  K D+  ++++ +       D  
Sbjct: 123 KMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRV 182

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  LC   RL EA  ++  M      PD   + +L+E  C  D ++ A  L+  M
Sbjct: 183 TYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGM 242

Query: 462 FASGCSGNLKTYNILISK------------------------------FSEVGEIEG--- 488
              GC+ +L T+ +L+SK                              F E+G   G   
Sbjct: 243 AKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDR 302

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV---MLARSILST 545
           A RL   M  +GVAP+  TYT+  +GL        A+  F + +   +   M+A ++L  
Sbjct: 303 AARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVL-- 360

Query: 546 FMISLCRRGHFLVATKLLR 564
            +   C+     +A K++R
Sbjct: 361 -VDGFCKANRLDMAEKMVR 378



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 21/363 (5%)

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           ++CKP+ ++Y  + +     G + +    + +  +  + P    Y   I  L   RRI  
Sbjct: 4   QDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISR 63

Query: 315 AKELGEVIVSGKFTIDDDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           A E  E +        + +L  L   G V+      A   F  M   G  P+  T + L 
Sbjct: 64  AIEFFETMPEPDVVTYNTLLGGLCKNGRVAQ-----ACSLFGSMEGAGITPSDVTYTTLI 118

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              CK  + +    + +++++      + SY  +++ LC + ++ +AY + +EMK  G  
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 178

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD   YN+L+   C +  L  AK L   M  +    +  T+  LI        I+ A  L
Sbjct: 179 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVL 238

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLC 551
           F  M ++G APD  T+T L+  LC    L+ A  V     N+       IL T +   L 
Sbjct: 239 FQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVR---NYPACPEAVILYTPIFRELG 295

Query: 552 RRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS--P 604
           RR  F  A +LL     RG++ ++    ++    K L D +E   A    + + E    P
Sbjct: 296 RRRGFDRAARLLQKMARRGVAPNV---VTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEP 352

Query: 605 TML 607
            M+
Sbjct: 353 DMV 355



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 8/155 (5%)

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +F+  C  N  +Y  L+      G+I+ A      M  + + PD  TY  +++ LC+   
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-SSDLGHSD-SHVI 578
           +  A E F      DV+   ++L      LC+ G    A  L   +  + +  SD ++  
Sbjct: 61  ISRAIEFFETMPEPDVVTYNTLLG----GLCKNGRVAQACSLFGSMEGAGITPSDVTYTT 116

Query: 579 LLKSLADAREVEMAIEHIKWI--QESSPTMLQEIS 611
           L+       + E A   ++ +  ++ SPT+    S
Sbjct: 117 LIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 151


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 236/521 (45%), Gaps = 48/521 (9%)

Query: 88  HSILKSLSLSRQI--NAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           HS L S    +Q+  +A+D +L Q++ +  I  D+ VY  ++  L++G   +   SV++E
Sbjct: 113 HSFLDSYE-GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSE 171

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      I P++   N+L+  L     +  A+ M +EMS RGV      F   +  F E 
Sbjct: 172 M--GARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +   L +  + R  E       V   ++I+G+CK  RVE+A   + +      +PD I
Sbjct: 230 GSIEAALRV--KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y                                     F+ GL     +  A ++ +V+
Sbjct: 288 TYNT-----------------------------------FVNGLCQNDHVGHALKVMDVM 312

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V      D    N ++  +  +     A    N M+++G +P ++T + L   LC  N+ 
Sbjct: 313 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRL 372

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E +++ + ++      D+ ++N++++ LC  G    A  + +EMK  G  PD   YN+L
Sbjct: 373 EEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C    L  A  L   M ++GC  +  TYN +I    +   IE A  +F  M  +G+
Sbjct: 433 IDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI 492

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           + +A T+ +L++GLC++  +  AFE+ N+ ++  +       ++ +   C++G    A  
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 562 LLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
           +L  ++++    D  ++  L+  L  A   ++A++ ++ ++
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 219/507 (43%), Gaps = 16/507 (3%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  L  L LR SL P LV  V+         +AL FF WA +Q  ++H P+ Y++
Sbjct: 150 WNPNFEGRLRHL-LR-SLKPPLVCAVLRSQ--ADERVALNFFYWADRQWRYSHHPVVYYT 205

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS ++       VL+ +    I      + +++ S  +    + A  V   ++   
Sbjct: 206 MLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAG 265

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL   G ++ ALK  + M   G++   + +   I  +C+   L ++ 
Sbjct: 266 VEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCD---LNRIE 322

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECK--PDFIAYRI 266
             L+ +    +       ++   + GF CK K++EE  K L E  +      PD + Y  
Sbjct: 323 DALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEV-KCLMEKMVWNSNLIPDQVTYNT 381

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G   +    LK+ +  G       Y   +     + R+ EAK L   + S  
Sbjct: 382 LIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRG 441

Query: 327 FTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              D     A++     +  ID    I+    M + G  P   + + L   LC   KS E
Sbjct: 442 CNPDVVTYTAIVDGFCRLGRIDEAKKIL--QQMYKHGCKPNTVSYTALLNGLCHSGKSLE 499

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             E+  V   + +  +  +Y  ++  L   G+L EA  + +EM  KG  P     N L++
Sbjct: 500 AREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQ 559

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           + C+   +  AKK  ++    GC+ N+  +  +I  F ++G++E AL +  +M   G  P
Sbjct: 560 SLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHP 619

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK 530
           DA TYT+L + L ++  L  A E+  K
Sbjct: 620 DAVTYTALFDALGKKGRLDEAAELIVK 646



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 188/450 (41%), Gaps = 12/450 (2%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           P +  ++L VL+       A ++   M+ RG+E     FG  +  +    KL   L +L 
Sbjct: 200 PVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLT 259

Query: 214 EVRKR--ENSM-INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
            ++K   E S+ I  + I VL+     KG ++E+A K L+ +++   KPD + Y  + + 
Sbjct: 260 LMQKAGVEPSLSICNTTIYVLV-----KGGKLEKALKFLERMQVTGIKPDIVTYNSLIKG 314

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +  + +   ++      G  P    Y   +  L  E++I E K L E +V     I 
Sbjct: 315 YCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIP 374

Query: 331 DDV-LNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D V  N LI  +S       A+ F     +KG        S +  + C++ + DE   + 
Sbjct: 375 DQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLV 434

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     D+ +Y  +V   C  GR+ EA  ++Q+M + G  P+   Y +L+   C  
Sbjct: 435 IDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHS 494

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                A+++ +       + N  TY  ++      G++  A  L   M+EKG  P     
Sbjct: 495 GKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEI 554

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             L++ LCQ   +  A +   + +N    +     +T +   C+ G    A  +L  +  
Sbjct: 555 NLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYL 614

Query: 569 DLGHSD--SHVILLKSLADAREVEMAIEHI 596
              H D  ++  L  +L     ++ A E I
Sbjct: 615 SGKHPDAVTYTALFDALGKKGRLDEAAELI 644



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 199/470 (42%), Gaps = 22/470 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++K      +I     ++  +       D   Y  ++  L + K  ++   +  +
Sbjct: 306 VTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEK 365

Query: 145 VKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + +N   I  ++  N+L+ +L+  G+ D+AL    E   +G     +G+   +  FC+  
Sbjct: 366 MVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKG 425

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           ++ +  S++ ++  R     N  V+    I+ GFC+  R++EA K+L ++    CKP+ +
Sbjct: 426 RMDEAKSLVIDMYSRG---CNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTV 482

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           +Y  +       G   E   ++    +    P    Y   + GL  E ++ EA +L   +
Sbjct: 483 SYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREM 542

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V   F      +N LI S+        A  +    + KG    +   + +    C+    
Sbjct: 543 VEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDM 602

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +  + V   +  +    D  +Y  +   L   GRL EA  +I +M  KGLDP    Y S+
Sbjct: 603 EAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSV 662

Query: 442 MEACCR----EDLLRPAKKLWD-QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
           +    +    +D+L   +K+   Q F +        YN +I K  + G +E A +L   +
Sbjct: 663 IHRYSQWGRVDDMLNLLEKMLKRQPFRT-------VYNQVIEKLCDFGNLEEAEKLLGKV 715

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEV----FNKSVNHDVMLARSI 542
           L      DA T   L+E   ++    +A++V    F +++  D+ L   +
Sbjct: 716 LRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKV 765


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 202/450 (44%), Gaps = 42/450 (9%)

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           RG   +   F + +  FC++    + + +   +++  N +I   V    +I+G CKGKR+
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR--NCLIPDCVSYNTVINGLCKGKRL 180

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG----------- 291
            EA ++  E++  ECKP+ + +  + + F   G V E   +L++  K+G           
Sbjct: 181 VEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSAL 240

Query: 292 ------------------------VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                                   V P    Y   +  L  +++  EA ++ + +   K 
Sbjct: 241 ISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKV 300

Query: 328 TIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D      L   +S     S AI   + M+++G  P   T + +   LCK  + D+ + 
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEA 444
           + + ++      D+ +Y+ +V  LC  G++ EA  ++  +  K   + PDV  +N +++ 
Sbjct: 361 ILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQE 420

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C++  LR AK+++  M   G   N+ TYNILI  +   G++  AL L+ + ++ G++P+
Sbjct: 421 LCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPN 480

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A TYT L+ GLC+   L  A  +FNK          S  +T M SLCR      A  L +
Sbjct: 481 AATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQ 540

Query: 565 GLSSDLGHSD--SHVILLKSLADAREVEMA 592
            + +     D  S  I++     A +VE A
Sbjct: 541 EMRNANHDPDVVSFNIIIDGTLKAGDVESA 570



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/510 (21%), Positives = 219/510 (42%), Gaps = 50/510 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY++++  L   +++     + K++K  +   +S  +  +I    +  + ++ F +  E
Sbjct: 165 VSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEE 224

Query: 145 VKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +    E +G E    + ++L++   S G I+   ++F+EM  + V  + + +   +   C
Sbjct: 225 M----EKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALC 280

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLII-HGFCKGKRVEEAFKVLDELRIRECKP 259
           +  K  +   MLD +       +   V+A  ++  G  K  R  +A KVLD +  R  +P
Sbjct: 281 KKQKWKEAAQMLDTM---TGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEP 337

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + Y  +       G V +   +L+   K G  P    Y   + GL    +I EA +L 
Sbjct: 338 NNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLL 397

Query: 320 EVIVSGKFTIDDDVL-------------------------------------NALI-GSV 341
            +++S +F I  DV                                      N LI G +
Sbjct: 398 NLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYL 457

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S+     A+  +   ++ G  P  +T + L   LCK         ++    A+     + 
Sbjct: 458 SAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVS 517

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN +++ LC    + +A  + QEM+    DPDV  +N +++   +   +  AK+L  +M
Sbjct: 518 EYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEM 577

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                  +  T++ILI++F ++G+++ A  L+  M+  G  PDA  + SLL+G   +   
Sbjct: 578 LNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKT 637

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           +    +  +  + DV+L   + ST +  LC
Sbjct: 638 EKVVSMLQQMADKDVVLDSKLTSTILACLC 667



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 1/197 (0%)

Query: 334 LNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           L+ALI S V++  P  A      ++++G    +   + L K  C+   S + ++++ ++ 
Sbjct: 97  LSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMK 156

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            N    D  SYN +++ LC   RL EA  + +EMK     P+   +++L++  C+   + 
Sbjct: 157 RNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVE 216

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
               L ++M   G  G++  Y+ LIS F   G+IE    LF+ ML K V P+  TY+ L+
Sbjct: 217 EGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLM 276

Query: 513 EGLCQETNLQAAFEVFN 529
             LC++   + A ++ +
Sbjct: 277 NALCKKQKWKEAAQMLD 293



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 100/205 (48%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P  ++LS L ++     K      V  ++    +  ++ ++N+++   C SG   +A  +
Sbjct: 92  PCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDL 151

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
              MKR  L PD   YN+++   C+   L  AK+L+ +M    C  N  T++ LI  F +
Sbjct: 152 FCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCK 211

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G++E    L   M + G+  D   Y++L+ G C + +++   E+FN+ +  +V      
Sbjct: 212 NGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVT 271

Query: 543 LSTFMISLCRRGHFLVATKLLRGLS 567
            S  M +LC++  +  A ++L  ++
Sbjct: 272 YSCLMNALCKKQKWKEAAQMLDTMT 296



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 119/260 (45%), Gaps = 2/260 (0%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L G   S D   A+  F  M     +P   + + +   LCK  +  E  E++K +   + 
Sbjct: 136 LKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGEC 195

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +  +++ ++   C +G + E +G+++EM++ GL+ DV  Y++L+   C +  +   K+
Sbjct: 196 KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKE 255

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++M     + N+ TY+ L++   +  + + A ++   M    V PD   YT L +GL 
Sbjct: 256 LFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLS 315

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
           +      A +V +  V           +  +  LC+ G    A  +L  ++      D  
Sbjct: 316 KNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVV 375

Query: 575 SHVILLKSLADAREVEMAIE 594
           ++  L+K L    +++ A++
Sbjct: 376 TYSTLVKGLCGVGKIDEAVD 395


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 129/545 (23%), Positives = 235/545 (43%), Gaps = 20/545 (3%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E+ L  L LR SL+P LV  V+         +AL FF WA +Q  + H  + Y++
Sbjct: 147 WNPKFEENLRHL-LR-SLNPRLVCAVLRSQ--DDERIALDFFYWADRQWRYRHDAIVYYT 202

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS +R       +L+ +    I      + +++ S  +    + A  +   ++   
Sbjct: 203 MLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAG 262

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL     ++ AL+  + M   G+E   + +   I  +C+  ++   L
Sbjct: 263 VEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDAL 322

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVA 268
            ++ E+  +       S   V+     CK ++VEE  ++++ + +     PD + Y  + 
Sbjct: 323 ELIAEMPFKGCPPDKVSYYTVMAF--LCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLI 380

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                 G   +  V L++  + G       Y   +      + I +AK L   + S    
Sbjct: 381 YALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCN 440

Query: 329 IDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            D     A+I     V  ID   A      M + G  P   T + L   LC   KS E  
Sbjct: 441 PDVVTYTAIIDGFCRVGKID--EAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAR 498

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+  V   + +  +  +Y+ ++  L   G+L EA  + +EM  KG  P+    N L+++ 
Sbjct: 499 EMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSL 558

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR   +  AKK  ++    GC+ N+  +  +I  F ++G+++ AL +  +M      PDA
Sbjct: 559 CRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDA 618

Query: 506 TTYTSLLEGLCQETNLQAAFE----VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            TYT+L + L +++ L  A E    +  K ++   +  R+++  F    C+ G      K
Sbjct: 619 ITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRF----CQWGRVDDMMK 674

Query: 562 LLRGL 566
           LL  +
Sbjct: 675 LLEKM 679



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 201/472 (42%), Gaps = 14/472 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+ ++K      +I+    ++ ++       D   Y  ++  L + +  ++   +   
Sbjct: 303 VSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMEN 362

Query: 145 VKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +  N   I  ++  N+L+  L+  G+ D+AL    E   +G     +G+   +  FC+N 
Sbjct: 363 MVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNK 422

Query: 204 KLGQVLSM-LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            + +  S+ +D   K  N  +   V    II GFC+  +++EA K+L ++    CKP+ +
Sbjct: 423 NIDKAKSLVIDMYSKGCNPDV---VTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTV 479

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y ++       G   E   ++    +    P    Y   + GL  E ++ EA +L   +
Sbjct: 480 TYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREM 539

Query: 323 VSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +   F  +   +N LI S+  + +   A  +    + KG    +   +++    C+    
Sbjct: 540 IEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDL 599

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  + + + +  ++   D  +Y  +   L    RL EA  +I +M  KG+DP    Y ++
Sbjct: 600 DAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAV 659

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKT-YNILISKFSEVGEIEGALRLFHNMLEKG 500
           +   C+   +    KL ++M A       KT YN +I K    G  E A +L   +L   
Sbjct: 660 IHRFCQWGRVDDMMKLLEKMIARQ---PFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTA 716

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEV----FNKSVNHDVMLARSILSTFMI 548
              DA T   L+E    + N  +A++V    F +++  D+ L   +    ++
Sbjct: 717 SKLDAKTCHILIESYLIDGNALSAYKVACQMFRRNLIPDLKLCEKVTKKLVL 768



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 2/171 (1%)

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           VMVS+   +G LR A  ++  M++ G++PD+S  N+ +    + + L  A +  ++M  +
Sbjct: 238 VMVSY-SRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVA 296

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   ++ +YN LI  + +V  I+ AL L   M  KG  PD  +Y +++  LC++  ++  
Sbjct: 297 GIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEV 356

Query: 525 FEVFNKSV-NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
             +    V N +++  +   +T + +L + GH   A   LR       H D
Sbjct: 357 KRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHID 407



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/437 (19%), Positives = 177/437 (40%), Gaps = 25/437 (5%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q  N     ++Y++++ +LS     +     L++ +     +D   Y  ++ S  + KN 
Sbjct: 365 QNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNI 424

Query: 136 QKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            KA S+   +    +   P++    +++      G ID A KM  +M   G + +T+ + 
Sbjct: 425 DKAKSLV--IDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYT 482

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           V +   C N K  +   M++     E+     ++    ++HG  +  ++ EA  +  E+ 
Sbjct: 483 VLLNGLCHNGKSLEAREMINV--SEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMI 540

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +   P+ +   ++ +      +V   +  L++    G A    ++   I G       C
Sbjct: 541 EKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGF------C 594

Query: 314 EAKELG-------EVIVSGKF--TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           +  +L        ++ +S K    I    L   +G  S +D  S ++    M+ KG  PT
Sbjct: 595 QIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVK--MLGKGIDPT 652

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T   +    C+  + D+++++ + + A   F  +  YN ++  LC  G   EA  ++ 
Sbjct: 653 PVTYRAVIHRFCQWGRVDDMMKLLEKMIARQPFKTV--YNQVIEKLCYFGNREEAEKLLG 710

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           ++ R     D    + L+E+   +     A K+  QMF      +LK    +  K    G
Sbjct: 711 KVLRTASKLDAKTCHILIESYLIDGNALSAYKVACQMFRRNLIPDLKLCEKVTKKLVLDG 770

Query: 485 EIEGALRLFHNMLEKGV 501
               A  L    +E+G+
Sbjct: 771 MPAEADDLMLRFVERGI 787


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 221/500 (44%), Gaps = 44/500 (8%)

Query: 67  ALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRF 124
           AL +FN    ++P      + ++ +L ++   R   +A+ S+ KQ+++  ++ D+     
Sbjct: 105 ALAYFNHMLHRKPR--PCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHM 162

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +I    Q +     FSV  ++      +     N+L+  L   G    A+++FD+M  RG
Sbjct: 163 LINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARG 222

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVE 243
            +     +   I   C   K+G+ ++     RK   +     V+    II   CK +RV 
Sbjct: 223 YQPDVHTYTTIINGLC---KIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVN 279

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAE----------------------------EFKLM- 274
           EA  +   ++ +   P+   Y  + +                             F L+ 
Sbjct: 280 EALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 275 ------GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                 G+VFE   VLK   ++GV P    Y   + G  ++  + EA++L +V+++    
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCK 399

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            D    N LI G   +     A   FN MI +G  P + + + L   LC+  +  E  ++
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL 459

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +K +  N    D+ +Y++++   C  G L +A+ + + M+   L P++  YN L++A C+
Sbjct: 460 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 519

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L+ A+KL+ ++F  G   N++ Y  +I+   + G ++ AL  F NM E G  P+  +
Sbjct: 520 SRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFS 579

Query: 508 YTSLLEGLCQETNLQAAFEV 527
           Y  ++ G  Q  +   A ++
Sbjct: 580 YNVIIRGFLQHKDESRAVQL 599



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 204/459 (44%), Gaps = 47/459 (10%)

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEIC----NSLL-AVLASDGYIDNALKMFDEMSHRGVEF 187
           +N   A + FN +        P  C    N LL A++    Y D  + +  +M   G+  
Sbjct: 100 RNIDDALAYFNHMLHR----KPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSP 155

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
            T    + I  F +  ++    S+L ++ K    +    V    +I+G CK  +  +A +
Sbjct: 156 DTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLT--IVTFNTLINGLCKVGKFGQAVE 213

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           + D++  R  +PD   Y  +      +G       + +K  + G  P    Y   I  L 
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC 273

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
            +RR+ EA ++                                  F++M  KG  P + T
Sbjct: 274 KDRRVNEALDI----------------------------------FSYMKAKGISPNIFT 299

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            ++L + LC  ++  E   +   + + +   ++ +++++++  C  G + EA GV++ M 
Sbjct: 300 YNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMT 359

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G++P+V  Y+SLM     +  +  A+KL+D M   GC  ++ +YNILI+ + +   I 
Sbjct: 360 EMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIG 419

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A +LF+ M+ +G+ PD  +Y +L++GLCQ   L+ A ++F   + +  +      S  +
Sbjct: 420 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 479

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
              C++G+   A +L R + S   +   ++++   L DA
Sbjct: 480 DGFCKQGYLAKAFRLFRAMQST--YLKPNMVMYNILIDA 516



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 176/394 (44%), Gaps = 9/394 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           D   Y  II  L +   T  A  +F ++ +  C+   P++   ++++  L  D  ++ AL
Sbjct: 226 DVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQ---PDVVTYSTIIDSLCKDRRVNEAL 282

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            +F  M  +G+  +   +   I   C  ++  +  +ML+E+    N M N  V   L+I+
Sbjct: 283 DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL-NIMPN-IVTFSLLIN 340

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
            FCK   V EA  VL  +     +P+ + Y  +   + L   V E   +       G  P
Sbjct: 341 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKP 400

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFF 353
               Y   I G    +RI EAK+L   ++    T D    N LI  +  +   R A   F
Sbjct: 401 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 460

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M+  G +P L T S L    CK+    +   +++ + +     +M  YN+++  +C S
Sbjct: 461 KNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS 520

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
             L+EA  +  E+  +GL P+V  Y +++   C+E LL  A + +  M   GC  N  +Y
Sbjct: 521 RNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSY 580

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           N++I  F +  +   A++L   M EKG   D  T
Sbjct: 581 NVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 228/519 (43%), Gaps = 44/519 (8%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +   L S +  +Q + + S+  Q+ + ++T +      +I  L +  +   + SV 
Sbjct: 92  SVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVL 151

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            ++ F    I P+    N+L+  L ++G I  A+++F+EM  RG E + I +   I   C
Sbjct: 152 GKM-FKL-GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K G     +D  +K E +    +V+    II   CK + V +A + L E+  R   P
Sbjct: 210 ---KTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPP 266

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           +   Y  +   F  +G + E   + K+     V P T  +   + GL  E  + EA+   
Sbjct: 267 NVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEAR--- 323

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                          + F  M EKG  P +ST + L    C + 
Sbjct: 324 -------------------------------LVFETMTEKGVEPDISTYNALMDGYCLQR 352

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             +E  +V++++          SYN++++  C S R+ EA  ++ EM  K L+PD   Y+
Sbjct: 353 LMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYS 412

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +LM+  C+    + A  L+ +M + G   NL TY IL+  F + G ++ AL+L  +M EK
Sbjct: 413 TLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEK 472

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
            + P+   YT L+EG+     L+ A E+F+K             +  +  L + G    A
Sbjct: 473 KLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEA 532

Query: 560 TKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHI 596
             L R +  D  L +S S+ ++++     ++   AI  I
Sbjct: 533 YDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLI 571



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 204/466 (43%), Gaps = 81/466 (17%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM---LDEVRKRENS----- 221
           +D+AL  F  M       S + FG F+  F +  +   V+S+   +D  R   N      
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 222 MING-----------SVIAVL--------------IIHGFCKGKRVEEAFKVLDELRIRE 256
           +IN            SV+  +              +I+G C   +++EA ++ +E+  R 
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            +P+ I+Y  V       G+      V KK  + G  P    Y   I  L  +R + +A 
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E                                  F + M+E+G  P + T +++    C
Sbjct: 254 E----------------------------------FLSEMVERGIPPNVFTYNSIVHGFC 279

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              + +E   ++K +   D   +  ++ ++V  LC  G + EA  V + M  KG++PD+S
Sbjct: 280 NLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDIS 339

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+LM+  C + L+  AKK+++ M   GC+    +YNILI+ + +   ++ A  L   M
Sbjct: 340 TYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEM 399

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL---CRR 553
             K + PD  TY++L++GLCQ    + A  +F +  ++        L T++I L   C+ 
Sbjct: 400 YHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG---PHPNLVTYVILLDGFCKH 456

Query: 554 GHFLVATKLLRG-----LSSDLGHSDSHVILLKSLADAREVEMAIE 594
           GH   A KLL+      L  ++ H   + IL++ +  A ++E+A E
Sbjct: 457 GHLDEALKLLKSMKEKKLEPNIVH---YTILIEGMFIAGKLEVAKE 499



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 219/489 (44%), Gaps = 8/489 (1%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           TH+  S + ++  L     ++   SVL ++    I  D+  +  +I  L      ++A  
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +FNE+     +       +++  L   G    A+ +F +M   G + + + +   I   C
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           ++  +   +  L E+ +R    I  +V     I+HGFC   ++ EA ++  E+  R+  P
Sbjct: 245 KDRLVNDAMEFLSEMVERG---IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMP 301

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + + I+ +     G V E  +V +   + GV P  + Y   + G  ++R + EAK++ 
Sbjct: 302 NTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVF 361

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E+++           N LI G   S     A      M  K   P   T S L + LC+ 
Sbjct: 362 EIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQL 421

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +  E + ++K + +     ++ +Y +++   C  G L EA  +++ MK K L+P++  Y
Sbjct: 422 GRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHY 481

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
             L+E       L  AK+L+ ++F  G   +++TY ++I    + G  + A  LF  M +
Sbjct: 482 TILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMED 541

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
            G  P++ +Y  +++G  Q  +   A  + ++ V     +    LSTF + L       +
Sbjct: 542 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVN---LSTFQMLLDLESQDEI 598

Query: 559 ATKLLRGLS 567
            ++ +RG S
Sbjct: 599 ISQFMRGSS 607


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 224/514 (43%), Gaps = 42/514 (8%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           +   L S +  +Q + + S+  Q+ +  +T +      +I  L +  +   A S+  ++ 
Sbjct: 91  FGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMF 150

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K           N+L+  L ++G I  A+++F+EM  RG E + I +   I   C   K 
Sbjct: 151 KLGIHPTASTF-NALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLC---KT 206

Query: 206 GQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           G     +D  +K E +     V+    II   CK + V +A + L E+  R   P+   Y
Sbjct: 207 GNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTY 266

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   F ++G + E   + K+     V P T      + GL  E  + EA+        
Sbjct: 267 NCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEAR-------- 318

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                                     + F  M EKG  P +ST + L    C +   +E 
Sbjct: 319 --------------------------LVFETMTEKGVEPNISTYNALMDGYCLQRLMNEA 352

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            +V++++        + SYN++++  C S R+ EA  ++ EM  K L+PD   Y++LM+ 
Sbjct: 353 KKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQG 412

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+    + A  ++ +M + G   NL TY+IL+  F + G ++ AL+L  +M EK + P+
Sbjct: 413 LCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPN 472

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              +T L+EG+     L+ A E+F+K     +       +  +  L + G    A  L R
Sbjct: 473 IVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFR 532

Query: 565 GLSSD--LGHSDSHVILLKSLADAREVEMAIEHI 596
            +  D  L +S S+ ++++     ++   AI  I
Sbjct: 533 KMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLI 566



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 218/489 (44%), Gaps = 8/489 (1%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           TH+  S + ++  L     ++   S+L ++    I   +S +  +I  L      ++A  
Sbjct: 120 THNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVE 179

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +FNE+     +      N+++  L   G    A+ +F +M   G +   + +   I   C
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           ++  +   +  L E+  R    I  +V     ++HGFC   ++ EA ++  E+  R+  P
Sbjct: 240 KDRLVNDAMEFLSEMLDRG---IPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMP 296

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D +   I+ +     G V E  +V +   + GV P  + Y   + G  ++R + EAK++ 
Sbjct: 297 DTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVF 356

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E+++           N LI G   S     A      M  K   P   T S L + LC+ 
Sbjct: 357 EIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQF 416

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +  E + ++K + +     ++ +Y++++   C  G L EA  +++ M+ K L+P++  +
Sbjct: 417 GRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHH 476

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
             L+E       L  AK+L+ ++FA G    ++TY ++I    + G  + A  LF  M +
Sbjct: 477 TILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMED 536

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
            G  P++ +Y  +++G  Q  +   A  + ++ V        + LSTF + L       +
Sbjct: 537 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRF---SANLSTFQMLLDLESQDEI 593

Query: 559 ATKLLRGLS 567
            ++ +RG S
Sbjct: 594 ISQFMRGSS 602



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 2/222 (0%)

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           SID   A+  F  M+     P+++       +  K+ +   +V +   +       ++ S
Sbjct: 68  SID--DALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYS 125

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            NV+++ LC    +  A  ++ +M + G+ P  S +N+L+   C E  ++ A +L+++M 
Sbjct: 126 LNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMV 185

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N+ +YN +I+   + G    A+ +F  M + G  PD  TY ++++ LC++  + 
Sbjct: 186 RRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVN 245

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            A E  ++ ++  +       +  +   C  G    AT+L +
Sbjct: 246 DAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFK 287



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 2/187 (1%)

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           T+  + +A      M R    P V+ +   + +  ++        L +QM   G + N+ 
Sbjct: 65  TNISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVY 124

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           + N+LI+    +  ++ A+ +   M + G+ P A+T+ +L+ GLC E  ++ A E+FN+ 
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEM 184

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
           V           +T +  LC+ G+  +A  + + +  +    D  ++  ++ SL   R V
Sbjct: 185 VRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLV 244

Query: 590 EMAIEHI 596
             A+E +
Sbjct: 245 NDAMEFL 251


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 139/605 (22%), Positives = 259/605 (42%), Gaps = 58/605 (9%)

Query: 33   LLEQTLHQLGLRDSLSPSLVARVINPYLLTHHS---------------LALGFFNWASQQ 77
            +L+  L Q  LR   SPS +   ++   LTH                 +AL FF WA   
Sbjct: 677  VLDTYLRQPHLR--FSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFYWAVGF 734

Query: 78   PNFTHSPLSYHSILKSLSLSRQIN-----------------------AIDSVLKQVKVNK 114
            P F +    Y  I+ ++SL  + N                       A+D +L  ++   
Sbjct: 735  PKFRYFMRLY--IVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMIL-DMRNQG 791

Query: 115  ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDN 172
            + L + V   II    + +  + A +VF+E+  +   + P+ C    ++     +G +  
Sbjct: 792  LVLTTRVMNRIILVAAEMRLVEYAGNVFDEM--SARGVYPDSCTYKYIIVGYCRNGNVLE 849

Query: 173  ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAV 230
            A +   EM  RG         + I  FCE + + + +    +V K     ++IN S +  
Sbjct: 850  ADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSM-- 907

Query: 231  LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER--EVVLKKKR 288
              I G CK   V++AF++L+E+     KP+   +  +       G   ER   + LK  R
Sbjct: 908  --ISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT-ERAFRLFLKLIR 964

Query: 289  KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
                 P  + Y   I G   E ++  A+ L E +       + +    LI G   + +  
Sbjct: 965  SDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFS 1024

Query: 348  SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
             A      M  +G  P   T +++   LCKR +++E  ++      N    D  +Y +++
Sbjct: 1025 KAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILI 1084

Query: 408  SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
            S  C    + +A   + +M + G  PD+  Y +L+ A CR+++++ ++KL+D++   G +
Sbjct: 1085 SEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLA 1144

Query: 468  GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
               +TY  +I  +    ++  A++ F  M + G APD+ +Y +L+ GLC+E+ L  A ++
Sbjct: 1145 PTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQL 1204

Query: 528  FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587
            ++  ++  +        T     C+   F  A  +L  L+  L     H  L++ L   +
Sbjct: 1205 YDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHT-LIRKLCCEK 1263

Query: 588  EVEMA 592
            +V +A
Sbjct: 1264 KVALA 1268


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 221/480 (46%), Gaps = 24/480 (5%)

Query: 34  LEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKS 93
           +E++L   G  D L P LV +VI  + +   + A   F WA +Q  FTH+  + +++L  
Sbjct: 56  IEKSLGLYG--DILVPDLVGKVI--HRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSV 111

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153
              +R++       +    N    D   Y  ++    +  + +KA ++F E+K    D G
Sbjct: 112 YVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMK----DSG 167

Query: 154 PEIC---NSLLAVLASDGYIDNALKMFDEMSHRGVEFST--IGFGVFIWKFCENAKLGQV 208
             +    N +L  L S G I  A ++F +MS  G+ FS   I + + I   C++ K+ + 
Sbjct: 168 IAVLRSHNIVLRGLCSGGKISMAWEVFKDMS--GI-FSPNLISYTIMIDGLCKSRKVDKA 224

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           +++  ++   + ++    V    +I G  K +RV+EA+ + +E R + C P  + Y  + 
Sbjct: 225 ITLFKQMV--DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 269 EEFKLMGSVFEREVVLKKK--RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +     G + E  + L     R+  + P    Y   I GL +  R  +A EL E ++   
Sbjct: 283 DGLCKCGRI-ENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTG 341

Query: 327 FTIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
            + D    N L+  +  S  + ++  +F    +     P + T + L    CK ++  + 
Sbjct: 342 CSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDA 401

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V++ K +       D  ++  ++  LC   R+ EA+ + + +  K   PD   +N+++  
Sbjct: 402 VKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIG-KTCKPDSVLFNTMLAG 460

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  AKKL D+M  SGC+  L TY  L++ F   G    AL ++H M+E G  P+
Sbjct: 461 YCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 160/343 (46%), Gaps = 27/343 (7%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
           RR+ +A    +  +   F  D+   N L+ G   + D + A+  F  M + G +  L + 
Sbjct: 116 RRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSG-IAVLRSH 174

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + + + LC   K     EV+K +S   +  ++ SY +M+  LC S ++ +A  + ++M  
Sbjct: 175 NIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVD 233

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           K + PDV  Y +L++   ++  ++ A  L+++  A GC   + TYN +I    + G IE 
Sbjct: 234 KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIEN 293

Query: 489 ALRLFHNML-EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           AL L+ +M+ E  + PD  TY++L+ GL      + A+E++ + ++          +T +
Sbjct: 294 ALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLL 353

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGH-SDSHVILLKSLAD--------------AREVEM- 591
             LC+ G    A ++ R +   +G+  D +VI    L D              A+E+E  
Sbjct: 354 DGLCKSGCEDKAMEIFRKMG--VGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGR 411

Query: 592 -----AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629
                A+     IQ+       + + ELF S+  +  P+ +L 
Sbjct: 412 SLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSVLF 454



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/441 (20%), Positives = 175/441 (39%), Gaps = 84/441 (19%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN+LL+V      +++A   F        E   + +   +  F +   + + L++  E++
Sbjct: 105 CNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMK 164

Query: 217 KRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
                    S IAVL     ++ G C G ++  A++V  ++      P+ I+Y I+ +  
Sbjct: 165 D--------SGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMS-GIFSPNLISYTIMIDGL 215

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
                V +   + K+     + P    Y   I GL  +RR+ EA +L             
Sbjct: 216 CKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL------------- 262

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                                F     KG  PT+ T + +   LCK  + +  + +Y  +
Sbjct: 263 ---------------------FEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301

Query: 392 SANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
               +   DM +Y+ +++ L  S R  +AY + +EM   G  PDV  YN+L++  C+   
Sbjct: 302 VREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGC 361

Query: 451 LRPAKKLWDQM-FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
              A +++ +M   + C  N+ TY +LI +F +V  +  A++L   M  + + PDA T+T
Sbjct: 362 EDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFT 421

Query: 510 S----------------------------------LLEGLCQETNLQAAFEVFNKSVNHD 535
           +                                  +L G C+ T +  A ++ ++ ++  
Sbjct: 422 TVIQKLCKESRIDEAHELFESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG 481

Query: 536 VMLARSILSTFMISLCRRGHF 556
                +  +  +   CR G +
Sbjct: 482 CAPTLATYTALVTGFCRTGRY 502


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 128/545 (23%), Positives = 232/545 (42%), Gaps = 60/545 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEIC--NSLLA 162
           VL+++K + I + S  +  +I +  +    +KA   F  ++ F+C+   P++   N +L 
Sbjct: 115 VLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCK---PDLFAFNLILH 171

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L        AL ++++M    +    + +G+ I   C+  K    L + DE+  R   +
Sbjct: 172 FLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDR--GI 229

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +   +I  +++ G C+ K++ +A ++  ++R   C  D I Y ++   F   G + +   
Sbjct: 230 LPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFT 289

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L+   K G       Y   I GL   RR  EA    + ++      D  +   +I  +S
Sbjct: 290 LLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLS 349

Query: 343 SIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             + R   A+     M E+G  P     + L K  C     DE   +   +S +D F + 
Sbjct: 350 Q-EGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNN 408

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL------------------- 441
            +Y++++  +C +G + +A  + +EM++ G  P V  +NSL                   
Sbjct: 409 HTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQ 468

Query: 442 -----------------------------MEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
                                        ME  C   ++  A KL  Q+  SG   +++T
Sbjct: 469 MEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRT 528

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YNILI+ F + G I GA +LF  M  KG  PD+ TY +L++GL +    + A E+F + V
Sbjct: 529 YNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMV 588

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKL-LRGLSSDLGHSDSHVILLKSLADAREVEM 591
               +   S   T M   CR  +  +A  + ++ L    G  D  V ++    D  E++ 
Sbjct: 589 KKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEKVRVVAESFDNEELQT 648

Query: 592 AIEHI 596
           AI  +
Sbjct: 649 AIRRL 653



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 196/444 (44%), Gaps = 24/444 (5%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           +V  Q+    +  D   Y  +I  L +   TQ A  +F+E+          I + +L+ L
Sbjct: 184 AVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGL 243

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
                I +A ++F +M   G     I + V +  FC++  L    ++L  + K      +
Sbjct: 244 CQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTK------D 297

Query: 225 GSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
           G ++ V+    +I+G  + +R EEA     ++     KPD + Y I+       G V E 
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEA 357

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-G 339
             +L +  + G+ P T  Y   I G      + EA+ L   I       ++   + LI G
Sbjct: 358 LTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY----------- 388
              +     A   F  M + G +P++ T ++L   LCK N+ +E   ++           
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL 477

Query: 389 --KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
             ++    D   D+ S  VM+  LC SG + +AY ++ ++   G+ PD+  YN L+   C
Sbjct: 478 FLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFC 537

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   +  A KL+ +M   G   +  TY  LI      G  E AL +F  M++KG  P+++
Sbjct: 538 KFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESS 597

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK 530
           TY +++   C+E N+  A  V+ K
Sbjct: 598 TYKTIMTWSCRENNISLALSVWMK 621



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/483 (20%), Positives = 188/483 (38%), Gaps = 83/483 (17%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NT 135
           +P   HS   YHS    ++ S +++ I   L  ++     + S +  + I S++Q + +T
Sbjct: 18  KPTLFHS---YHSRTNPIATSIEVSTIIETLDPMEDGLKVISSRIRSYTITSVLQEQPDT 74

Query: 136 QKAFSVF----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +  F +F          C  +   I   L+   A + Y     K+  E+ +  ++ S+  
Sbjct: 75  RLGFRLFIWSLKSWHLRCRTVQDLIIGKLIKENAFELY----WKVLQELKNSAIKISSEA 130

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F V I  + E          +DE                          +  E+F ++ +
Sbjct: 131 FSVLIEAYSEAG--------MDE--------------------------KAVESFGLMRD 156

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
               +CKPD  A+ ++               +++K+              F+L L V  +
Sbjct: 157 F---DCKPDLFAFNLILH------------FLVRKE-------------AFLLALAVYNQ 188

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
           + +     +V+  G           + G   +   + A+V F+ M ++G +P     S +
Sbjct: 189 MLKCNLNPDVVTYGIL---------IHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIV 239

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LC+  K  +   ++  + A+    D+ +YNV+++  C SG L +A+ ++Q + + G 
Sbjct: 240 LSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGH 299

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
              V  Y  L+    R      A   + +M       ++  Y I+I   S+ G +  AL 
Sbjct: 300 ILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALT 359

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M E+G+ PD   Y +L++G C    L  A  +  +   HD        S  +  +C
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMC 419

Query: 552 RRG 554
           + G
Sbjct: 420 KNG 422



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 190/456 (41%), Gaps = 46/456 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ +L     S  ++   ++L+ +  +   L    Y  +I  L + +  ++A   +  
Sbjct: 269 ITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ- 327

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   E+I P++    + +  L+ +G +  AL +  EM+ RG+   TI +   I  FC+ 
Sbjct: 328 -KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDM 386

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  S+  E+ K +    N    ++LI  G CK   + +A  +  E+    C P  +
Sbjct: 387 GYLDEAESLRLEISKHD-CFPNNHTYSILIC-GMCKNGLINKAQHIFKEMEKLGCLPSVV 444

Query: 263 AYRIVA---------EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +  +          EE +L+   ++ E+V K    L ++  T+   +     ++  R+C
Sbjct: 445 TFNSLINGLCKANRLEEARLL--FYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLC 502

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           E+   G ++ + K  +                          +++ G +P + T + L  
Sbjct: 503 ES---GMILKAYKLLMQ-------------------------LVDSGVLPDIRTYNILIN 534

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK    +   +++K +    +  D  +Y  ++  L  +GR  +A  + ++M +KG  P
Sbjct: 535 GFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVP 594

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           + S Y ++M   CRE+ +  A  +W +          +   ++   F    E++ A+R  
Sbjct: 595 ESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEKVRVVAESFDN-EELQTAIRRL 653

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             M  K    D   YT  L GL Q      AF +F+
Sbjct: 654 LEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFS 689



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/268 (18%), Positives = 107/268 (39%), Gaps = 37/268 (13%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G I  A K+  ++   GV      + + I  FC+   +     +  E++ + +  +
Sbjct: 501 LCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH--M 558

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA--------------- 268
             SV    +I G  +  R E+A ++ +++  + C P+   Y+ +                
Sbjct: 559 PDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618

Query: 269 -------------EEFKLMGSVFERE---VVLKKKRKLGVAPRTND---YREFILGLIVE 309
                        E+ +++   F+ E     +++  ++ +  +  D   Y  F++GL+  
Sbjct: 619 WMKYLRDFRGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQA 678

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
           +R CEA  +  V+   K  I       LIG +  ++    A+  F F +E+G        
Sbjct: 679 KRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPIC 738

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + L  NL   ++ D+ + +   + A+ Y
Sbjct: 739 NQLLCNLLHLDRKDDALFLANRMEASGY 766


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 210/496 (42%), Gaps = 12/496 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +  +L S++  +  + + S+  Q+    I  D      +I S    +    AFSV 
Sbjct: 149 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 208

Query: 143 NEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            ++ K  C+       N+L+  L  +G I  AL +FD+    G +   + +G  +   C 
Sbjct: 209 AKLLKLGCQPDNTTF-NTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLC- 266

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             K+G   + +  +R         +VIA   II   CK ++V EAF +  E+  +   PD
Sbjct: 267 --KVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPD 324

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              Y  +      +        +L +     + P    +   +  L  E  I  A ++ +
Sbjct: 325 IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVD 384

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +++      D     AL+ G     +   A+  F+ M+ KG VP + + + L    C+  
Sbjct: 385 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 444

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + D+ + + + +S      D  +YN ++  LC  GRL+ A  +  EM   G  PD+  Y 
Sbjct: 445 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 504

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++  C+   L  A  L   +  S    ++  YNI I      GE+E A  LF N+  K
Sbjct: 505 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 564

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G+ PD  TY  ++ GLC+   L  A ++F K   +       I +T +    R      A
Sbjct: 565 GLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGA 624

Query: 560 TKLLR-----GLSSDL 570
           T+LL+     G S+D+
Sbjct: 625 TQLLQEMLAEGFSADV 640



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 198/455 (43%), Gaps = 16/455 (3%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QP+ T    +++++++ L +  +I     +  +        D   Y  ++  L +  NT 
Sbjct: 217 QPDNT----TFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 272

Query: 137 KAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            A  +    V+ NC    P +   N+++  L  D  +  A  +F EM  +G+      + 
Sbjct: 273 AAIRLLRSMVQKNCR---PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 329

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL 252
             I   C   +   V ++L+E+    NS I  +V+    ++   CK   +  A  V+D +
Sbjct: 330 SLIHALCNLCEWKHVTTLLNEMV---NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM 386

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R  +PD + Y  + +   L   + E   V       G  P    Y   I G    +R+
Sbjct: 387 IKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRM 446

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A  L E +       D    N LI  +  +   + AI  F+ M+  G++P L T   L
Sbjct: 447 DKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRIL 506

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK +   E + + K +  ++   D+  YN+ +  +C +G L  A  +   +  KGL
Sbjct: 507 LDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGL 566

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV  YN ++   C+  LL  A KL+ +M  +GCS +   YN +I  F    E  GA +
Sbjct: 567 QPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQ 626

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           L   ML +G + D +T T ++E L  +  L  +FE
Sbjct: 627 LLQEMLAEGFSADVSTTTLIVEML-SDDGLDQSFE 660



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 188/427 (44%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     ST+ F   +    +      VLS+  ++   ++  I   V  
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM---DSFGIPPDVYT 187

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC  +R+  AF VL +L    C+PD   +  +     + G + E   +  K  
Sbjct: 188 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 247

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   + GL        A  L   +V      +    N +I S+       
Sbjct: 248 GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVT 307

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ MI KG  P + T ++L   LC   +   +  +   +  +    ++  ++ +V
Sbjct: 308 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 367

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G +  A+ V+  M ++G++PDV  Y +LM+  C    +  A K++D M   GC 
Sbjct: 368 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV 427

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+++YNILI+ + ++  ++ A+ L   M  +G+  D  TY +L+ GLC    LQ A  +
Sbjct: 428 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 487

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V    +         +  LC+  H   A  LL+ +      +D  V  I +  +  
Sbjct: 488 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 547

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 548 AGELEAA 554



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 124/253 (49%), Gaps = 12/253 (4%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+     P+    + L  ++ K      ++ +   + +     D+ + N++++
Sbjct: 134 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 193

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   RL  A+ V+ ++ + G  PD + +N+L+   C E  +  A  L+D+    G   
Sbjct: 194 SFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQP 253

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY  L++   +VG    A+RL  +M++K   P+   Y ++++ LC++  +  AF +F
Sbjct: 254 DVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLF 313

Query: 529 N----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584
           +    K ++ D+    S++   + +LC   H  V T L   ++S +     +V++  ++ 
Sbjct: 314 SEMITKGISPDIFTYNSLIHA-LCNLCEWKH--VTTLLNEMVNSKIM---PNVVVFSTVV 367

Query: 585 DA--REVEMAIEH 595
           DA  +E  +AI H
Sbjct: 368 DALCKEGMIAIAH 380


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 214/508 (42%), Gaps = 66/508 (12%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWAS--------------QQPNFTHSPLSYHSILKSLS 95
           ++V +  NP ++    L  GFF   +               QP+      +Y++++    
Sbjct: 114 TMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDV----FAYNALINGFC 169

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGP 154
              +I+    VL +++    + D+  Y  +I SL        A  V N++   NC+   P
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ---P 226

Query: 155 EICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
            +    + + A+  +G +D ALK+ DEM  RG++     +                    
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT------------------ 268

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                              II G CK   V+ AF+++  L ++ C+PD I+Y I+     
Sbjct: 269 -------------------IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G   E E ++ K       P    Y   I  L  + +I EA  L +++     T D  
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 333 VLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             + LI +      +D   AI F   MI  G +P +   + +   LCK  K+D+ +E++ 
Sbjct: 370 SYDPLIAAFCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            L       +  SYN M S L +SG    A  +I EM   G+DPD   YNS++   CRE 
Sbjct: 428 KLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
           ++  A +L   M +     ++ TYNI++  F +   IE A+ +  +M+  G  P+ TTYT
Sbjct: 488 MVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYT 547

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            L+EG+        A E+ N  V  D +
Sbjct: 548 VLIEGIGFAGYRAEAMELANDLVRIDAI 575



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 2/324 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I H  C+     E+  +L+ +  +   PD I    + + F  + ++ +   V++   K G
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
             P    Y   I G     RI +A  + + + S  F+ D    N +IGS+ S      A+
Sbjct: 155 -QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              N ++     PT+ T + L +        DE +++   + +     DM +YN ++  +
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G +  A+ +++ ++ KG +PDV  YN L+ A   +      +KL  +MF+  C  N+
Sbjct: 274 CKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNV 333

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ILI+     G+IE A+ L   M EKG+ PDA +Y  L+   C+E  L  A E    
Sbjct: 334 VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET 393

Query: 531 SVNHDVMLARSILSTFMISLCRRG 554
            ++   +      +T + +LC+ G
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNG 417



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 184/376 (48%), Gaps = 25/376 (6%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER---EVVLKKKR 288
           +I+GFCK  R+++A +VLD +R ++  PD + Y I      ++GS+  R   ++ LK   
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI------MIGSLCSRGKLDLALKVLN 217

Query: 289 KL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SS 343
           +L      P    Y   I   ++E  + EA +L + ++S     D    N +I  +    
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +  R+  +  N  + KG  P + + + L + L  + K +E  ++   + +     ++ +Y
Sbjct: 278 MVDRAFEMVRNLEL-KGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +++++ LC  G++ EA  +++ MK KGL PD   Y+ L+ A CRE  L  A +  + M +
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN--- 520
            GC  ++  YN +++   + G+ + AL +F  + E G +P++++Y ++   L    +   
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 521 -LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHV 577
            L    E+ +  ++ D +   S++S     LCR G    A +LL  + S   H    ++ 
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISC----LCREGMVDEAFELLVDMRSCEFHPSVVTYN 512

Query: 578 ILLKSLADAREVEMAI 593
           I+L     A  +E AI
Sbjct: 513 IVLLGFCKAHRIEDAI 528



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + E+  K   PDV  YN+L+   C+ + +  A ++ D+M +   S +  TYNI+I     
Sbjct: 146 VMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G+++ AL++ + +L     P   TYT L+E    E  +  A ++ ++ ++  +      
Sbjct: 206 RGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFT 265

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            +T +  +C+ G    A +++R L       D  S+ ILL++L +  + E
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWE 315



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/367 (17%), Positives = 151/367 (41%), Gaps = 17/367 (4%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++Y  ++++  L   ++    ++ ++    +  D   Y  II  + +     +A
Sbjct: 223 NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRA 282

Query: 139 FSVFNEVKF-NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           F +   ++   CE   P++   N LL  L + G  +   K+  +M     + + + + + 
Sbjct: 283 FEMVRNLELKGCE---PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C + K+ + +++L  ++  E  +   +     +I  FC+  R++ A + L+ +   
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMK--EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C PD + Y  V       G   +   +  K  ++G +P ++ Y      L        A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV--FFNFMIEKGRV---PTLSTLSN 370
             +   ++S     D+   N++I  +     R  +V   F  +++       P++ T + 
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLC----REGMVDEAFELLVDMRSCEFHPSVVTYNI 513

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +    CK ++ ++ + V + +  N    +  +Y V++  +  +G   EA  +  ++ R  
Sbjct: 514 VLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRID 573

Query: 431 LDPDVSF 437
              + SF
Sbjct: 574 AISEYSF 580


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 203/449 (45%), Gaps = 49/449 (10%)

Query: 96  LSRQINAIDSVLKQVKV---NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152
           LSR  N  + +   +KV     I+ +++ Y  II SL +    ++A  +  ++ F     
Sbjct: 232 LSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST- 290

Query: 153 GPEICNSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
            P++ +    +   DGY     +  ALK+ D+M  +G++ +   +   I   C+  K  +
Sbjct: 291 -PDVVSYSTVI---DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFE 346

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              +L E+  ++  +I  +V+   +IHGF K   V  A K  DE+  ++  PD+I Y  +
Sbjct: 347 AEKVLREMMSQK--IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTL 404

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            + F   G V E + +  +    G+ P    Y   I         C+A   GE++     
Sbjct: 405 IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI------DVYCKA---GEMV----- 450

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                               +A    N M++ G  P + T   L   LCK  + D   E+
Sbjct: 451 --------------------NAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       ++  YN MV+ +C +G + +A  +++EM+  G+DPD   Y ++++A CR
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              +  A KL  +M   G    + T+N+L++ F  +G +E   RL   MLEKG+ PDA T
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT 610

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           Y +L++  C   ++    +++ +  N  V
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGV 639



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 224/516 (43%), Gaps = 34/516 (6%)

Query: 64  HSLALGFFNWAS--QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSS 120
           ++L L FF+WA   ++P+     +  H  + S  L      +       K+   + +   
Sbjct: 116 YNLVLAFFDWARVRREPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQF 175

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            +R I      G N   AF +F                    VL   G++  A K+ D++
Sbjct: 176 THRLIYTYKYWGPNPI-AFDIF------------------FQVLVEIGHLSEARKLLDKL 216

Query: 181 SHRGVEFSTIGFGVFIWKFCENAK-LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
              G+  +      F+ +   N++ +   + +  E     N+         +II+  C+ 
Sbjct: 217 LSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYN-----IIIYSLCRL 271

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +V+EA ++L ++  R   PD ++Y  V + +  +G + +   ++   +  G+ P    Y
Sbjct: 272 GKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY 331

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              IL L    +  EA+++   ++S K   D+ V   LI     +   R+A  +F+ M+ 
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           K   P   T + L +   +  K  E   ++  + +     D  +Y  ++   C +G +  
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ +  EM + G+ P++  Y +L++  C+   L  A +L D+M   G   N+  YN +++
Sbjct: 452 AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNH 534
              + G IE A++L   M   G+ PDA TYT++++  C+  ++  A     E+ ++ +  
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 535 DVMLARSILSTF-MISLCRRGHFLVATKLLRGLSSD 569
            V+    +++ F M+ +   G  L+   L +G+  D
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 168/394 (42%), Gaps = 52/394 (13%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           KI+ D   Y  +I    QG    +  ++F+E+             +L+ V    G + NA
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--------ENSMING 225
             + +EM   G+  + + +G  I   C++ +L     +LDE+RK+         NSM+NG
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
                      CK   +E+A K++ E+ +    PD I Y  V + +  +G + +   +L+
Sbjct: 513 ----------ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +    G+ P    +   + G                               ++G +   D
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGF-----------------------------CMLGMLEDGD 593

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
                    +M+EKG VP   T + L K  C RN  +   ++YK +       D  +YN+
Sbjct: 594 R-----LLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++   C +  L+EA+ + +EM  KG  P V+ YN+L++   ++     A++L+++M   G
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHG 708

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
              + + YN  +    E G++E  L L    +EK
Sbjct: 709 LVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 9/310 (2%)

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF-TIDDDVLN---A 336
           E+ +K   + G++  T  Y   I  L    R+ + KE   +++   F +   DV++    
Sbjct: 243 EMAIKVFCEYGISWNTTSYNIIIYSLC---RLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G     + + A+   + M  KG  P   T +++   LCK  KS E  +V + + +   
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D   Y  ++      G +R A     EM  K + PD   Y +L++   +   +   + 
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQN 419

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+ +M + G   +  TY  LI  + + GE+  A  L + M++ G+ P+  TY +L++GLC
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
           +   L  A E+ ++     + L   I ++ +  +C+ G+   A KL++ +  ++   D  
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPD 537

Query: 577 VILLKSLADA 586
            I   ++ DA
Sbjct: 538 AITYTTVIDA 547


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 15/366 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L S G    AL++  +M       + + +   I  FC   ++   L ++ E+R+
Sbjct: 492 NIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRE 547

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIV----AEEFK 272
           R     N       +I G+CK  RV+EA KV DE+  + E KP+ + Y  +     ++ K
Sbjct: 548 RGGIAPNQYTYGT-VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 606

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L  ++  R+ ++++    GVA     Y   +  L ++ R  EA EL E +       D  
Sbjct: 607 LDTALLYRDRMVER----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 662

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G     + + A+  F  M  +G   T+ T + L   L K+ +  E  +++   
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YN +++   TSG +  A+ ++ EM++K + PD   YN+LM   C    +
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+KL D+M   G   +L TYN LIS +S  G+++ ALR+ + M+ KG  P   TY +L
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 842

Query: 512 LEGLCQ 517
           ++GLC+
Sbjct: 843 IQGLCK 848



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 165/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F +M    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQM-PRPNAVTYNTVIA--- 527

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A  ++ E+R R                                   G+
Sbjct: 528 --GFCSRGRVQAALDIMREMRERG----------------------------------GI 551

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           AP    Y   I G     R+ EA K   E++  G+   +  + NALIG       +D  +
Sbjct: 552 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--T 609

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+++ + M+E+G   T++T                                   YN++V 
Sbjct: 610 ALLYRDRMVERGVAMTVAT-----------------------------------YNLLVH 634

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   GR  EAY +++EM  KGL PDV  YN L+   C+E  ++ A ++++ M   G   
Sbjct: 635 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 694

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TY  LI   S+ G+++   +LF   + +G+ PD   Y +L+       N+  AFE+ 
Sbjct: 695 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 754

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M  LC  G    A KL+     RG+  DL
Sbjct: 755 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 801



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 155/371 (41%), Gaps = 11/371 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++Y++++       ++ A   ++++++    I  +   Y  +I    +     +A  VF+
Sbjct: 520 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 579

Query: 144 EVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           E+    E + PE  + N+L+      G +D AL   D M  RGV  +   + + +     
Sbjct: 580 EMLTKGE-VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 638

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + +  +   +++E+  +   +        ++I+G CK   V++A ++ + +  R  +   
Sbjct: 639 DGRGTEAYELVEEMGGK--GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 696

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  +       G V E + +  +  + G+ P    Y   I        I  A E+   
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756

Query: 322 IVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +   +   DD   N L+  +     +D   A    + M E+G  P L T + L      +
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVD--EARKLIDEMTERGIQPDLVTYNTLISGYSMK 814

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
               + + +   +    +   + +YN ++  LC +G+  +A  +++EM   G+ PD S Y
Sbjct: 815 GDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTY 874

Query: 439 NSLMEACCRED 449
            SL+E    ED
Sbjct: 875 ISLIEGLTTED 885



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 2/263 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++ +L +  +      +++++    +  D   Y  +I    +  N +KA  +F  +
Sbjct: 628 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 687

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                        +L+  L+  G +    K+FDE   RG+    + +   I     +  +
Sbjct: 688 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 747

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+ K+   +    V    ++ G C   RV+EA K++DE+  R  +PD + Y 
Sbjct: 748 DRAFEIMGEMEKKR--IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 805

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   + + G V +   +  +    G  P    Y   I GL    +  +A+ + + +V  
Sbjct: 806 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865

Query: 326 KFTIDDDVLNALIGSVSSIDPRS 348
             T DD    +LI  +++ D R+
Sbjct: 866 GITPDDSTYISLIEGLTTEDERA 888


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 203/449 (45%), Gaps = 49/449 (10%)

Query: 96  LSRQINAIDSVLKQVKV---NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152
           LSR  N  + +   +KV     I+ +++ Y  II SL +    ++A  +  ++ F     
Sbjct: 232 LSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST- 290

Query: 153 GPEICNSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
            P++ +    +   DGY     +  ALK+ D+M  +G++ +   +   I   C+  K  +
Sbjct: 291 -PDVVSYSTVI---DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFE 346

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              +L E+  ++  +I  +V+   +IHGF K   V  A K  DE+  ++  PD+I Y  +
Sbjct: 347 AEKVLREMMSQK--IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTL 404

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            + F   G V E + +  +    G+ P    Y   I         C+A   GE++     
Sbjct: 405 IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI------DVYCKA---GEMV----- 450

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                               +A    N M++ G  P + T   L   LCK  + D   E+
Sbjct: 451 --------------------NAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       ++  YN MV+ +C +G + +A  +++EM+  G+DPD   Y ++++A CR
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              +  A KL  +M   G    + T+N+L++ F  +G +E   RL   MLEKG+ PDA T
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT 610

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           Y +L++  C   ++    +++ +  N  V
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGV 639



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 224/516 (43%), Gaps = 34/516 (6%)

Query: 64  HSLALGFFNWAS--QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSS 120
           ++L L FF+WA   ++P+     +  H  + S  L      +       K+   + +   
Sbjct: 116 YNLVLAFFDWARVRREPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQF 175

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            +R I      G N   AF +F                    VL   G++  A K+ D++
Sbjct: 176 THRLIYTYKYWGPNPI-AFDIF------------------FQVLVEIGHLSEARKLLDKL 216

Query: 181 SHRGVEFSTIGFGVFIWKFCENAK-LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
              G+  +      F+ +   N++ +   + +  E     N+         +II+  C+ 
Sbjct: 217 LSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYN-----IIIYSLCRL 271

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            +V+EA ++L ++  R   PD ++Y  V + +  +G + +   ++   +  G+ P    Y
Sbjct: 272 GKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY 331

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              IL L    +  EA+++   ++S K   D+ V   LI     +   R+A  +F+ M+ 
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           K   P   T + L +   +  K  E   ++  + +     D  +Y  ++   C +G +  
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ +  EM + G+ P++  Y +L++  C+   L  A +L D+M   G   N+  YN +++
Sbjct: 452 AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNH 534
              + G IE A++L   M   G+ PDA TYT++++  C+  ++  A     E+ ++ +  
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 535 DVMLARSILSTF-MISLCRRGHFLVATKLLRGLSSD 569
            V+    +++ F M+ +   G  L+   L +G+  D
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 169/394 (42%), Gaps = 52/394 (13%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           KI+ D   Y  +I    QG    +  ++F+E+             +L+ V    G + NA
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--------ENSMING 225
             + +EM   G+  + + +G  I   C++ +L     +LDE+RK+         NSM+NG
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
                      CK   +E+A K++ E+ +    PD I Y  V + +  +G + +   +L+
Sbjct: 513 ----------ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +    G+ P    +   + G                               ++G +   D
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGF-----------------------------CMLGMLEDGD 593

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
                    +M+EKG VP   T + L K  C RN  +   ++YK +       D  +YN+
Sbjct: 594 R-----LLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++   C +  L+EA+ + +EM  KG  P V+ YN+L++   ++  +  A++L+++M   G
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHG 708

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
              + + YN  +    E G++E  L L    +EK
Sbjct: 709 LVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 9/310 (2%)

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF-TIDDDVLN---A 336
           E+ +K   + G++  T  Y   I  L    R+ + KE   +++   F +   DV++    
Sbjct: 243 EMAIKVFCEYGISWNTTSYNIIIYSLC---RLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G     + + A+   + M  KG  P   T +++   LCK  KS E  +V + + +   
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D   Y  ++      G +R A     EM  K + PD   Y +L++   +   +   + 
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQN 419

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+ +M + G   +  TY  LI  + + GE+  A  L + M++ G+ P+  TY +L++GLC
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
           +   L  A E+ ++     + L   I ++ +  +C+ G+   A KL++ +  ++   D  
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPD 537

Query: 577 VILLKSLADA 586
            I   ++ DA
Sbjct: 538 AITYTTVIDA 547


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 235/525 (44%), Gaps = 27/525 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++++L    +I    +VL ++          +Y  I+ +  +G   + A  V  ++
Sbjct: 124 TYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 183

Query: 146 KF-NCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               C  D+G   CN +L  +   G +D AL +  ++   G E   + +   +   C   
Sbjct: 184 HARGCALDVGN--CNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAK 241

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V  +++E+  R     N      LI +  C+    E   +VL ++    C PD   
Sbjct: 242 RWGCVQELMEEM-VRMACPPNIVTFNTLISY-LCRNGLFERVHEVLAQMVEHGCTPDIRM 299

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + +     G +     +L +    G+ P    Y   + GL    R  E +EL   + 
Sbjct: 300 YATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF 359

Query: 324 SGKFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
                +DD   N L+      G V  +     I     M+E+G +P + T + +    CK
Sbjct: 360 DKDCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLERGCMPDVITYTTVINGFCK 414

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE V + K ++A     +  SY +++  LC++ R  +A  ++ +M ++G   +   
Sbjct: 415 EGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPIT 474

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L+   C++ L+  A +L  QM  +GCS +L +Y+ +I    + G+ + AL L + M+
Sbjct: 475 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 534

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRR 553
            KG++P+   Y+S+   L +E  +    ++F+     ++  D +L  +++S    SLC+R
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS----SLCKR 590

Query: 554 GHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHI 596
           G    A + L  + S   + +  ++ IL++ LA    V+ A E +
Sbjct: 591 GETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 635



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 206/458 (44%), Gaps = 44/458 (9%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           P+F   P  +SY+++LK L ++++   +  +++++       +   +  +I  L +    
Sbjct: 219 PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLF 278

Query: 136 QKAFSVFNE-VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           ++   V  + V+  C    P+I    +++  +  +G+++ A ++ + M   G++ + + +
Sbjct: 279 ERVHEVLAQMVEHGCT---PDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCY 335

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              +   C   +  +   +L E+  ++  + +  V   +++  FC+   V+   ++L+++
Sbjct: 336 NTLLKGLCSAERWEETEELLAEMFDKDCPLDD--VTFNILVDFFCQNGLVDRVIELLEQM 393

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R C PD I Y  V   F   G + E  ++LK     G  P T  Y       IV + +
Sbjct: 394 LERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT------IVLKGL 447

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C A+         ++   +D+++ +I     ++P +     NF                 
Sbjct: 448 CSAE---------RWVDAEDLMSQMIQQGCPLNPITFNTLINF----------------- 481

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LCK+   ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ 
Sbjct: 482 --LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMS 539

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+   Y+S+  A  RE  +    +++D +  +    +   YN +IS   + GE E A+  
Sbjct: 540 PNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEF 599

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              M+  G  P+ +TYT L+ GL  E  ++ A E+  +
Sbjct: 600 LAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTE 637



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 43/208 (20%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN MV+  C +G+L  A  +   +    + P+   Y  ++ A C    +  A  + D+M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 463 -----------------------------------ASGCSGNLKTYNILISKFSEVGEIE 487
                                              A GC+ ++   N++++   + G ++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            AL L  ++   G  PD  +Y ++L+GLC         E+  + V           +T +
Sbjct: 210 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 548 ISLCRRG-----HFLVATKLLRGLSSDL 570
             LCR G     H ++A  +  G + D+
Sbjct: 270 SYLCRNGLFERVHEVLAQMVEHGCTPDI 297



 Score = 45.8 bits (107), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN +++ +   G++E A RL   +    V P+A TY  ++  LC    +  A  V ++  
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAR 587
                    +    + + CR G F  A ++L     RG + D+G+ +   ++L ++ D  
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQG 206

Query: 588 EVEMAIEHIK 597
            V+ A+  ++
Sbjct: 207 SVDEALHLLR 216


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 202/486 (41%), Gaps = 79/486 (16%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           LSY  ++K+L  + +I+   S + ++   K+  D   Y  +I +L + +   +A   F  
Sbjct: 36  LSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFET 95

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +        P++   N+LL  L  +G +  A  +F  M   G+  S + +   I  FC+ 
Sbjct: 96  MP------EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKM 149

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +      +L  +  R+ S    S  +  II+G CK ++V++A+++ +E+++  CKPD +
Sbjct: 150 CQFETAYGLLQLMASRKCSPTVYSYCS--IINGLCKNRKVDQAYQLFEEMKLAGCKPDRV 207

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +                                   I GL V++R+ EAK+L  V+
Sbjct: 208 TYNTL-----------------------------------IHGLCVKQRLHEAKDLLTVM 232

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC----- 376
           V   F  D     ALI  + + D  + A V F  M ++G  P L T + L   LC     
Sbjct: 233 VENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKL 292

Query: 377 ----------------------------KRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
                                       +R   D    + + ++      ++ +Y     
Sbjct: 293 RPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFK 352

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L        AY   + M  +G++PD+  YN L++  C+ D L  A+K+   M  SG   
Sbjct: 353 GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPP 412

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TYN L+      G++E    L H M+ +G  PD  T+++L+ GL       AA+   
Sbjct: 413 NIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFL 472

Query: 529 NKSVNH 534
           N +++ 
Sbjct: 473 NLAMSQ 478



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 159/380 (41%), Gaps = 21/380 (5%)

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           + +R E+   V   +  ++CKP+ ++Y  + +     G + +    + +  +  + P   
Sbjct: 12  RARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVF 71

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI--GSVSSIDPRSAIVFFNF 355
            Y   I  L   RRI  A E  E +        + +L  L   G V+      A   F  
Sbjct: 72  TYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQ-----ACSLFGS 126

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M   G  P+  T + L    CK  + +    + +++++      + SY  +++ LC + +
Sbjct: 127 MEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRK 186

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +AY + +EMK  G  PD   YN+L+   C +  L  AK L   M  +G   +  T+  
Sbjct: 187 VDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTA 246

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI        I+ A  LF  M ++G APD  T+T L+  LC    L+ A  V     N+ 
Sbjct: 247 LIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVR---NYP 303

Query: 536 VMLARSILSTFMI-SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREV 589
                 IL T +   L RR  F  A +LL     RG+  ++    ++    K L D +E 
Sbjct: 304 ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNV---VTYTAFFKGLGDWKEG 360

Query: 590 EMAIEHIKWIQESS--PTML 607
             A    + + E    P M+
Sbjct: 361 MRAYREFRRMLEQGIEPDMV 380



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 147/379 (38%), Gaps = 62/379 (16%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           ++   C+  ++++A   + E+   +  PD   Y +V +              L K R++ 
Sbjct: 41  LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVID-------------TLCKARRIS 87

Query: 292 VA---------PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
            A         P    Y   + GL    R+ +A  L   +     T  D     LI    
Sbjct: 88  RAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 147

Query: 343 SI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +    +A      M  +   PT+ +  ++   LCK  K D+  ++++ +       D  
Sbjct: 148 KMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRV 207

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  LC   RL EA  ++  M   G  PD   + +L+E  C  D ++ A  L+  M
Sbjct: 208 TYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGM 267

Query: 462 FASGCSGNLKTYNILISK------------------------------FSEVGEIEG--- 488
              GC+ +L T+ +L+SK                              F E+G   G   
Sbjct: 268 AKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDR 327

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV---MLARSILST 545
           A RL   M  +GV P+  TYT+  +GL        A+  F + +   +   M+A ++L  
Sbjct: 328 AARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVL-- 385

Query: 546 FMISLCRRGHFLVATKLLR 564
            +   C+     +A K++R
Sbjct: 386 -VDGFCKADRLDMAEKMVR 403



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 14/173 (8%)

Query: 449 DLLRPAKK------LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           DLL  A++      ++ ++F+  C  N  +Y  L+      G+I+ A      M  + + 
Sbjct: 8   DLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLV 67

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           PD  TY  +++ LC+   +  A E F      DV+   ++L      LC+ G    A  L
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLG----GLCKNGRVAQACSL 123

Query: 563 LRGL-SSDLGHSD-SHVILLKSLADAREVEMAIEHIKWI--QESSPTMLQEIS 611
              +  + +  SD ++  L+       + E A   ++ +  ++ SPT+    S
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 176


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 173/356 (48%), Gaps = 3/356 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K K    A  +  +++++  +PD     I+   F  +G +     VL K  KLG
Sbjct: 16  IVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      + GL ++  + ++    + +V+  F +D      L+  +  I + RSA+
Sbjct: 76  YQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSAL 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                + ++   P +   + +   LCK    +E  ++Y  + A   F ++ +Y+ ++   
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGF 195

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C +G+L EA+G++ EM  K ++P+V  Y  LM+A C+E  ++ AK L   M   G   N+
Sbjct: 196 CLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNV 255

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +YN L+  +  +GE++ A ++FH M++KGV P+  +Y  +++ LC+   +  A  +  +
Sbjct: 256 VSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLRE 315

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            ++ +++      S+ +   C+ G    A  LL+ +      +D  V+   SL DA
Sbjct: 316 VLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPAD--VVTYTSLLDA 369



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 197/448 (43%), Gaps = 5/448 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + ++ I+ SL   +      S+ KQ++V  I  D      +I           +F+V  +
Sbjct: 11  MEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGK 70

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            N+L+  L   G +  +L   D++  +G +   + +   +   C   K
Sbjct: 71  ILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC---K 127

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +G+  S L  +R  E+     +V+    II G CK K V EA+ +  E+  R   P+ I 
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   F L G + E   +L +     + P    Y   +  L  E ++ EAK L  V+ 
Sbjct: 188 YSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT 247

Query: 324 SGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 +    N L+     I + ++A   F+ M++KG  P + + + +   LCK  + D
Sbjct: 248 KEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVD 307

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + + + +   +   +  +Y+ ++   C  GR+  A  +++EM  +G   DV  Y SL+
Sbjct: 308 EAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLL 367

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +A C+   L  A  L+ +M   G   N  TY  LI    + G  + A +LF ++L KG  
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCR 427

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +  TY  ++ GLC+E  L  A  + +K
Sbjct: 428 INVWTYNVMISGLCKEGMLDEALAMKSK 455



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 208/477 (43%), Gaps = 48/477 (10%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L LG+      QPN     ++ ++++K L L  ++        +V      +D   Y  +
Sbjct: 72  LKLGY------QPN----TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATL 121

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           +  L +   T+ A  +   ++         + N+++  L  D  ++ A  ++ EM  RG+
Sbjct: 122 LNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEE 244
             + I +   I+ FC   +L +   +L+E+  +    IN +V    +++   CK  +V+E
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN---INPNVYTYTILMDALCKEGKVKE 238

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +L  +     KP+ ++Y  + + + L+G V   + +     + GV P    Y     
Sbjct: 239 AKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYN---- 294

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
             I+  R+C++K + E                            A+     ++ K  VP 
Sbjct: 295 --IMIDRLCKSKRVDE----------------------------AMNLLREVLHKNMVPN 324

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T S+L    CK  +    +++ K +       D+ +Y  ++  LC +  L +A  +  
Sbjct: 325 TVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           +MK +G+ P+   Y +L++  C+    + A+KL+  +   GC  N+ TYN++IS   + G
Sbjct: 385 KMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEG 444

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
            ++ AL +   M E G  PDA T+  ++  L ++     A ++ ++ +  D++  R 
Sbjct: 445 MLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLRFRD 501



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 96/201 (47%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P +   + +  +L K       + ++K +       D+ + N++++  C  G++  ++ V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++ + G  P+    N+LM+  C +  ++ +    D++ A G   +  +Y  L++   +
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +GE   AL+L   + ++   P+   Y ++++GLC++  +  A++++++     +      
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 543 LSTFMISLCRRGHFLVATKLL 563
            ST +   C  G  + A  LL
Sbjct: 188 YSTLIYGFCLAGQLMEAFGLL 208



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++ +  +      A  L+ QM   G   +L T NILI+ F  +G++  +  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L+ G  P+  T  +L++GLC +  ++ +    +K V     + +   +T +  LC+
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 553 RGHFLVATKLLR 564
            G    A KLLR
Sbjct: 128 IGETRSALKLLR 139


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 15/366 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L S G    AL++  +M       + + +   I  FC   ++   L ++ E+R+
Sbjct: 487 NIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRE 542

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIV----AEEFK 272
           R     N       +I G+CK  RV+EA KV DE+  + E KP+ + Y  +     ++ K
Sbjct: 543 RGGIAPNQYTYGT-VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 601

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L  ++  R+ ++++    GVA     Y   +  L ++ R  EA EL E +       D  
Sbjct: 602 LDTALLYRDRMVER----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 657

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G     + + A+  F  M  +G   T+ T + L   L K+ +  E  +++   
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YN +++   TSG +  A+ ++ EM++K + PD   YN+LM   C    +
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+KL D+M   G   +L TYN LIS +S  G+++ ALR+ + M+ KG  P   TY +L
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 837

Query: 512 LEGLCQ 517
           ++GLC+
Sbjct: 838 IQGLCK 843



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 165/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F +M    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQM-PRPNAVTYNTVIA--- 522

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A  ++ E+R R                                   G+
Sbjct: 523 --GFCSRGRVQAALDIMREMRERG----------------------------------GI 546

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           AP    Y   I G     R+ EA K   E++  G+   +  + NALIG       +D  +
Sbjct: 547 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--T 604

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+++ + M+E+G   T++T                                   YN++V 
Sbjct: 605 ALLYRDRMVERGVAMTVAT-----------------------------------YNLLVH 629

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   GR  EAY +++EM  KGL PDV  YN L+   C+E  ++ A ++++ M   G   
Sbjct: 630 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 689

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TY  LI   S+ G+++   +LF   + +G+ PD   Y +L+       N+  AFE+ 
Sbjct: 690 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 749

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M  LC  G    A KL+     RG+  DL
Sbjct: 750 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 796



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 155/371 (41%), Gaps = 11/371 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++Y++++       ++ A   ++++++    I  +   Y  +I    +     +A  VF+
Sbjct: 515 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 574

Query: 144 EVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           E+    E + PE  + N+L+      G +D AL   D M  RGV  +   + + +     
Sbjct: 575 EMLTKGE-VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 633

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + +  +   +++E+  +   +        ++I+G CK   V++A ++ + +  R  +   
Sbjct: 634 DGRGTEAYELVEEMGGK--GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 691

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  +       G V E + +  +  + G+ P    Y   I        I  A E+   
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 751

Query: 322 IVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +   +   DD   N L+  +     +D   A    + M E+G  P L T + L      +
Sbjct: 752 MEKKRIAPDDVTYNTLMRGLCLLGRVD--EARKLIDEMTERGIQPDLVTYNTLISGYSMK 809

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
               + + +   +    +   + +YN ++  LC +G+  +A  +++EM   G+ PD S Y
Sbjct: 810 GDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTY 869

Query: 439 NSLMEACCRED 449
            SL+E    ED
Sbjct: 870 ISLIEGLTTED 880



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 2/263 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++ +L +  +      +++++    +  D   Y  +I    +  N +KA  +F  +
Sbjct: 623 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 682

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                        +L+  L+  G +    K+FDE   RG+    + +   I     +  +
Sbjct: 683 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 742

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+ K+   +    V    ++ G C   RV+EA K++DE+  R  +PD + Y 
Sbjct: 743 DRAFEIMGEMEKKR--IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 800

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   + + G V +   +  +    G  P    Y   I GL    +  +A+ + + +V  
Sbjct: 801 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 860

Query: 326 KFTIDDDVLNALIGSVSSIDPRS 348
             T DD    +LI  +++ D R+
Sbjct: 861 GITPDDSTYISLIEGLTTEDERA 883


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/531 (20%), Positives = 215/531 (40%), Gaps = 70/531 (13%)

Query: 75  SQQPNFTHSPLSYH-SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           S  PN   +    H + ++ L+ +  ++ +   L+++++  +          I +  +  
Sbjct: 45  SPAPNAGEALARAHEATVRRLAAAGDLDGVQYTLQEMRLRGVACPEGALVAAICAFARAG 104

Query: 134 NTQKAFSVFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
              +A   F   + +     P   + N LL  L  +  +   + ++D M   GVE +   
Sbjct: 105 AADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYT 164

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVL----------------- 231
           + + I   C+N ++G    MLDE+ +   R + + + ++I+ L                 
Sbjct: 165 YNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMT 224

Query: 232 --------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
                   ++H  C   R+ E F V+DE+  R  +PD +AY  +   F     +     +
Sbjct: 225 PVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAI 284

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L +    G  P    +                     V+V G F  DD  ++  +G    
Sbjct: 285 LARMVTEGCVPNVQTF--------------------TVLVKGFF--DDGKVHDALG---- 318

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    +N+M+ +G  P+  + + L + LC        + V+  +  +D   D+ +Y
Sbjct: 319 --------MWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTY 370

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++     +G L  A  +  +M   G  P+V  Y ++++  C++ +   A+ L D+M  
Sbjct: 371 STLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSL 430

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
             C  N  T+N LI    ++G    AL +FH M   G  P+  TY  LL GL +E N + 
Sbjct: 431 ENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCED 490

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSD 569
           A  +  + +NH   L+    +T +  LC     +    L+   +++G+  D
Sbjct: 491 ALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPD 541



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/477 (19%), Positives = 185/477 (38%), Gaps = 45/477 (9%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  +PN      +Y+ ++K+L  + ++ A   +L ++       D   +  II +L +  
Sbjct: 156 AGVEPNV----YTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLD 211

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A  +  E+      +G    N+++  L     +     + DEM HRG+   T+ + 
Sbjct: 212 RLDEARGILAEMT----PVGASY-NAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYT 266

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI--------------------- 232
             +  FC+  +L    ++L  +   E  + N     VL+                     
Sbjct: 267 SIVGAFCKARELRMACAILARMVT-EGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVA 325

Query: 233 -------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                        I G C    ++ A  V   +   +C PD   Y  + + F   G +  
Sbjct: 326 EGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDV 385

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +       G  P    Y   +  L  +    +A+ L + +       +    N LI 
Sbjct: 386 AMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIR 445

Query: 340 SVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           S+  +     A+  F+ M   G  P   T + L   L +    ++ + +   +  + +  
Sbjct: 446 SLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFEL 505

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
            + SYN  +S LC    ++EA  ++  M  +G+ PD   +N+++ A C+E  +R A  + 
Sbjct: 506 SLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWML 565

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            +M A  C  N+  Y  L+S      +++ A+     ML +G+ P+  T+  L+ G+
Sbjct: 566 GRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLVRGI 622


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/558 (23%), Positives = 238/558 (42%), Gaps = 49/558 (8%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L LR  +   LV  V+   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 72  KWGPDAEKALEVLMLR--VDHWLVREVMKTDIGV--NVKMQFFRWAAKRRNYEHDTSTYM 127

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L +  Q   +  +++++  N I  +  +    ++  L   K   KA ++F ++K 
Sbjct: 128 ALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKT 187

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                  +  NS++ +L  +G      ++++EMS  G  F  T+ +   I  FC+  +  
Sbjct: 188 RKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRD 247

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
               +L+E++  EN M   + I  ++I  F K   V  A  + +E+R + C+PD   Y  
Sbjct: 248 SATQLLNEMK--ENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTE 305

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVI 322
           +       G + E      + ++ G  P T      I  L    R+ +A    +E+G + 
Sbjct: 306 LIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLR 365

Query: 323 VSGKFTIDDDVLNALIGSVS---------------SIDPRS------------------A 349
                   + ++ AL  S S                I P S                  A
Sbjct: 366 CIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKA 425

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           ++    M EKG  P  +   +L   L K  + D   E+++ L  N   +    Y VM+  
Sbjct: 426 MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L  +GRL +A  +  EM + G  PDV  YN+LM    R  +L  A     +M   GC  +
Sbjct: 486 LGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +YNI+++  ++ G    A+ +  NM +  V PD  +Y ++L  L      + A ++  
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLME 605

Query: 530 K----SVNHDVMLARSIL 543
           +       +D++   SIL
Sbjct: 606 EMNTLGFEYDLITYSSIL 623



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 43/383 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
           S+ ++++      D   Y  +I  L +     +A+  F E++   E   P+  + N+++ 
Sbjct: 286 SLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR--EGCRPDTVVMNNMIN 343

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-AKLGQVLSMLDEVRKRENS 221
            L   G +D+A+K+F EM       S + +   I    E+ ++  +V S  +  R +E+ 
Sbjct: 344 FLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE--RMKESG 401

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   S    ++I GFCK  R+E+A  +L+E+  +   P   AY  + +            
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID------------ 449

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS 340
             L K ++  +A                   CE  +EL E   S    +   ++  L G 
Sbjct: 450 -ALGKAKRYDLA-------------------CELFQELKENCGSSSARVYAVMIKHL-GK 488

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +D   AI  F+ M + G  P +   + L   L +    DE +   + +  +    D+
Sbjct: 489 AGRLD--DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDI 546

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            SYN++++ L  +G    A  ++  MK+  + PDV  YN+++ A     +   A KL ++
Sbjct: 547 NSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEE 606

Query: 461 MFASGCSGNLKTYNILISKFSEV 483
           M   G   +L TY+ ++    +V
Sbjct: 607 MNTLGFEYDLITYSSILEAIGKV 629



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 5/265 (1%)

Query: 83  SPLSYHSILKSLSLSR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S ++Y++I+K+L  S+ + + + S  +++K + I+  S  Y  +I    +    +KA  +
Sbjct: 369 SVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMML 428

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             E+        P    SL+  L      D A ++F E+       S   + V I    +
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGK 488

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             +L   ++M DE+ K   +     V A   ++ G  +   ++EA   +  ++   C PD
Sbjct: 489 AGRLDDAINMFDEMNKLGCA---PDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             +Y I+       G       +L   ++  V P    Y   +  L       EA +L E
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLME 605

Query: 321 VIVSGKFTIDDDVLNALIGSVSSID 345
            + +  F  D    ++++ ++  +D
Sbjct: 606 EMNTLGFEYDLITYSSILEAIGKVD 630


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 211/493 (42%), Gaps = 14/493 (2%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--NTQKAFSVFNE 144
           ++ +L SL   +  + + S+ KQ+ ++ I  +      +I  L      +   AFS   +
Sbjct: 72  FNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGK 131

Query: 145 V-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + K   +        +LL  L S   I +A+K+FDE+   G   S I +   I   C   
Sbjct: 132 MFKLGLQPTHVTF-GTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLC--- 187

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           K+G   + L  ++K E       V+A   +I   CK +R  EA     E+  +   P+ +
Sbjct: 188 KIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVV 247

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   F  +G + E   + K+     V P T  +   + GL  E  I EA+ + E++
Sbjct: 248 TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM 307

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  D    +AL+ G         A   F+ M+ KG  P++   + L    CK  + 
Sbjct: 308 TENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRL 367

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E   +   +   D   D  +Y+ ++   C +GR + A  + +EM   GL PD   Y+ L
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSIL 427

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C+   L  A +L   M  S    ++  YNILI      G++E A  LF N+  KG+
Sbjct: 428 LDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI 487

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P   TYT ++ GL +E     A E+F K V +  +      +  +    R G    A +
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVR 547

Query: 562 LL-----RGLSSD 569
           L+     RG S+D
Sbjct: 548 LIEEMVGRGFSAD 560



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 177/398 (44%), Gaps = 41/398 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G C   ++ +A K+ DE+      P  I Y  + +    +G       +LKK  + G
Sbjct: 147 LLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG 206

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P    Y   I  L  +RR  EA                                  + 
Sbjct: 207 CKPDVVAYNTVIDSLCKDRRANEA----------------------------------MY 232

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF+ M+++G  P + T S++    C   + +E   ++K +   +   +  ++ ++V  LC
Sbjct: 233 FFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLC 292

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + EA  V + M   G++PD   Y++LM+  C +  +  A+KL+D M   G + +++
Sbjct: 293 KEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVR 352

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            YNILI+   +   +  A  L   M ++ + PD  TY++L++G CQ    Q A ++F + 
Sbjct: 353 VYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEM 412

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREV 589
            ++ ++      S  +  LC+ GH   A +LL+ +  S    H   + IL++ + +  ++
Sbjct: 413 CSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKL 472

Query: 590 EMAIE-----HIKWIQESSPTMLQEISAELFASLSSSS 622
           E A E      +K IQ S  T    IS  L   LS+ +
Sbjct: 473 EAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEA 510



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 203/454 (44%), Gaps = 19/454 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRF 124
           ALG       QP  TH  +++ ++L  L    +I  ID+V    ++ K+    S+  Y  
Sbjct: 128 ALGKMFKLGLQP--TH--VTFGTLLNGLCSKAKI--IDAVKLFDEIGKMGFAPSLITYTT 181

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEM 180
           II  L +  +T  A  +  ++    E+ G  P++   N+++  L  D   + A+  F EM
Sbjct: 182 IIKGLCKIGHTTNALQLLKKM----EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEM 237

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +G+  + + +   +  FC   +L +  S+  ++  R N M N +V   +++ G CK  
Sbjct: 238 VDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR-NVMPN-TVTFTILVDGLCKEG 295

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            + EA +V + +     +PD   Y  + + + L   + E + +       G AP    Y 
Sbjct: 296 MILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYN 355

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I G    RR+ EAK L   +     T D    + L+ G   +  P+ A   F  M   
Sbjct: 356 ILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSY 415

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P   T S L   LCK    DE   + K +  +     +  YN+++  +C  G+L  A
Sbjct: 416 GLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAA 475

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +   +  KG+ P V  Y  ++    +E L   A +++ +M  +GC  N  TYN+ I  
Sbjct: 476 RELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQG 535

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           F   G+   A+RL   M+ +G + D++T+  LL+
Sbjct: 536 FLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/542 (22%), Positives = 242/542 (44%), Gaps = 28/542 (5%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYR 123
           S AL  F WAS  PNF H+  +Y +++  L   R+   +  VL ++  +     D S++ 
Sbjct: 108 SQALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFV 167

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF-DEMSH 182
            I+  L + +  ++   V + +    E+   +I NS+L VL  +  ID A + +  +M  
Sbjct: 168 TIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKED-IDLAREFYRKKMMM 226

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
            GV      FG+ +   C   ++G    +L  ++ R  +    +VI   +IH  CK  +V
Sbjct: 227 NGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKT--PNTVIYNTMIHALCKNGKV 284

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
             A  +++E+     +P  + + ++   +    ++ +  V+L+K   +G  P      + 
Sbjct: 285 GRARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKV 340

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGR 361
           +  L    R+ E  E+ E + S    +D    N LI     +   +        M  KG 
Sbjct: 341 VGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGC 400

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P + T + L+   C     D  ++++  +  +    +  +Y+ ++  LC+ GR+ + + 
Sbjct: 401 LPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFK 460

Query: 422 VIQEMK--RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM---FASGCSGNLKTYNIL 476
           +++ M+  R G    +S YNS++    +++    A +   +M   F      +L+     
Sbjct: 461 ILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLR----- 515

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F   G I  A R++  M+++G  P    Y  L+ G CQ+ N++ AFE+ N+ V+H  
Sbjct: 516 ILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGY 575

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEM 591
                  +  + + C +G    A KL+     RG   D+G   S+  ++ +L +  + + 
Sbjct: 576 FPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMG---SYSPMVDALCNKGDFQK 632

Query: 592 AI 593
           A+
Sbjct: 633 AV 634



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 112/523 (21%), Positives = 199/523 (38%), Gaps = 78/523 (14%)

Query: 16  AIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWAS 75
            I+    R R  R+   +L+  + + G   SL   +   +++  +     LA  F+    
Sbjct: 168 TIVRGLGRARMVRQMIKVLD-LITKFGENPSLK--IFNSILDVLVKEDIDLAREFYRKKM 224

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
                +    ++  ++K L L+ +I     +L+ +K    T ++ +Y  +I +L +    
Sbjct: 225 MMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKV 284

Query: 136 QKAFSVFNE------VKFN------CED---------------IG--PEICNS--LLAVL 164
            +A S+ NE      V FN      C++               +G  P++  +  ++ +L
Sbjct: 285 GRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGIL 344

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC--ENAKLGQVL------------- 209
              G +   +++ + +   G     + +   I  FC    AK+G  +             
Sbjct: 345 CKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNV 404

Query: 210 -------------SMLDEVRKRENSM----INGSVIAV-LIIHGFCKGKRVEEAFKVLDE 251
                         MLD      N M    IN + +    +I G C G R+E+ FK+L+ 
Sbjct: 405 DTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILE- 463

Query: 252 LRIRECKPDFIAYRIVAEEFKLMG----SVFEREV-VLKKKRKLGVAPRTNDYREFILGL 306
             + E        RI      + G    + FE  +  L K  KL   PR  D    ILG 
Sbjct: 464 --LMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVDRSLRILGF 519

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             E  I +AK + + ++         V   LI G     + R A    N M++ G  PT 
Sbjct: 520 CNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTA 579

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L    C + K    +++ + +       DM SY+ MV  LC  G  ++A  +  +
Sbjct: 580 PTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQ 639

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           M  K + PD S +NS++    +E +      L+      G  G
Sbjct: 640 MVEKDILPDYSTWNSMLLCLTQETVWLEGDNLFHLQLQDGKYG 682


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 236/521 (45%), Gaps = 48/521 (9%)

Query: 88  HSILKSLSLSRQI--NAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           HS L S    +Q+  +A+D +L Q++ +  I  D+ VY  ++  L++G   +   SV++E
Sbjct: 21  HSFLDSYE-GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSE 79

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      I P++   N+L+  L     +  A+ M +EMS RGV      F   +  F E 
Sbjct: 80  M--GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 137

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +   L +  + R  E       V   ++I+G+CK  RVE+A   + +      +PD I
Sbjct: 138 GSIEAALRV--KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 195

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y                                     F+ GL     +  A ++ +V+
Sbjct: 196 TYNT-----------------------------------FVNGLCQNDHVGHALKVMDVM 220

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V      D    N ++  +  +     A    N M+++G +P ++T + L   LC  N+ 
Sbjct: 221 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRL 280

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E +++ + ++      D+ ++N++++ LC  G    A  + +EMK  G  PD   YN+L
Sbjct: 281 EEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 340

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C    L  A  L   M ++GC  +  TYN +I    +   IE A  +F  M  +G+
Sbjct: 341 IDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI 400

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           + +A T+ +L++GLC++  +  AFE+ N+ ++  +       ++ +   C++G    A  
Sbjct: 401 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 460

Query: 562 LLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
           +L  ++++    D  ++  L+  L  A   ++A++ ++ ++
Sbjct: 461 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 501


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 244/560 (43%), Gaps = 53/560 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  V+   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 68  KWGPDAEKALEVLMLK--VDHWLVREVMKTDVGV--NVKMQFFRWAAKKRNYEHDTSTYM 123

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L +  Q   +  +++++  N + + + +    II  L   K   KA ++F ++K 
Sbjct: 124 ALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKV 183

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                  +  NS++ +L  +G  +   ++++EMS+ G  F  T+ +   I  FC+  +  
Sbjct: 184 RKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQD 243

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + +L+E++  +N M   + I  ++I  F K   V  A  + +E+R + C+PD   Y  
Sbjct: 244 SAIRLLNEMK--DNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTE 301

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVI 322
           +       G   E      + R+ G  P T      I  L    R+ +A    +E+G + 
Sbjct: 302 LIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQ 361

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                   + ++ AL  S S I   S+  +F  M   G  P+  T S L    CK N+++
Sbjct: 362 CIPSVVTYNTIIKALFESKSRISEISS--WFERMKGSGISPSPFTYSILIDGFCKTNRTE 419

Query: 383 ELV-----------------------------------EVYKVLSANDYFTDMESYNVMV 407
           + +                                   E+++ L  N   +    Y VM+
Sbjct: 420 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMI 479

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             L  +GRL +A  +  EM + G  P+V  YN+LM    R  +L  A     +M   GC 
Sbjct: 480 KHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCI 539

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            ++ +YNI+++  ++ G    A+ +  NM +  + PDA +Y ++L  +      + A ++
Sbjct: 540 PDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKL 599

Query: 528 FNK----SVNHDVMLARSIL 543
             +       +D++   SIL
Sbjct: 600 MKEMNVLGFEYDLITYSSIL 619



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 148/337 (43%), Gaps = 10/337 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALK 175
           D   Y  +I  L +     +A++ F+E++   E   P+  + N+++  L   G +D+A+K
Sbjct: 295 DVFTYTELIRGLGKAGRFDEAYNFFHEMRR--EGCRPDTVVINNMINFLGKAGRLDDAVK 352

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCEN-AKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           +F+EM       S + +   I    E+ +++ ++ S  +  R + + +        ++I 
Sbjct: 353 LFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFE--RMKGSGISPSPFTYSILID 410

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           GFCK  R E+A  +L+E+  +   P   AY  ++    K        E+  + K   G +
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCG-S 469

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
                Y   I  L    R+ +A  L + +     T +    NAL+  ++       A+  
Sbjct: 470 SSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTT 529

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
              M E G +P +++ + +   L K       +E+   +  +    D  SYN ++  +  
Sbjct: 530 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSH 589

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +G   EA  +++EM   G + D+  Y+S++EA  + D
Sbjct: 590 AGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVD 626


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/542 (23%), Positives = 237/542 (43%), Gaps = 10/542 (1%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P LE  L  L LR SL P  V  V+   L T   +AL FF WA +Q  + H P+ Y++
Sbjct: 84  WNPKLEGELRHL-LR-SLKPRQVCAVLQ--LQTDERVALRFFYWADRQWRYRHDPIVYYA 139

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL+ +   +I      + +++ S  +    + A  V   ++   
Sbjct: 140 MLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAG 199

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL     +D A++  + M    +E + I +   I  +C+  +L   +
Sbjct: 200 IEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAM 259

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDE-LRIRECKPDFIAYRIV 267
            ++ E+  +  S      I+   + GF CK KR++E   ++++ L+     PD + Y   
Sbjct: 260 ELIAEMPFKGCS---PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTF 316

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                  G   E    L++  +         Y   +     E R+ +AKE+   + S   
Sbjct: 317 VHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGC 376

Query: 328 TIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D     ++I G         A      M + G  P   + + L   LCK   S E  E
Sbjct: 377 IPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEARE 436

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           +  +   + +  +  +Y+V++      G+  EA  +++EM +KG  P     N L+++ C
Sbjct: 437 MMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLC 496

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E+ +  AK+  +Q   +GC+ N+  +  +I  F +  ++E AL L  +M      PD  
Sbjct: 497 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 556

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TYT++++ L ++  ++ A ++  K +   ++       T +   CR G      KLL  +
Sbjct: 557 TYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM 616

Query: 567 SS 568
            S
Sbjct: 617 LS 618



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/479 (21%), Positives = 184/479 (38%), Gaps = 78/479 (16%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLS 210
           P +  ++L +L+       A ++   M+ R +E     FG  +  +    KL    +VL+
Sbjct: 134 PIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLT 193

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           M+ +     +  I  + I VL++     G R+++A + L+ ++I E +P+ I Y  + + 
Sbjct: 194 MMQKAGIEPDLSICNTAIHVLVM-----GNRLDKAVRFLERMQIVEIEPNVITYNCLIKG 248

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +  + +   ++ +    G +P    Y   +  L  E+RI E + L E     K   D
Sbjct: 249 YCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLME-----KMLKD 303

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
            ++L                            P   T +     L K    DE +E  + 
Sbjct: 304 SNLL----------------------------PDQVTYNTFVHMLSKHGHGDEALEFLRE 335

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                +  D   Y+ +V   C  GR+ +A  ++ EM  KG  PDV  Y S++   C+E  
Sbjct: 336 AEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERK 395

Query: 451 LRPAKKLWDQMFASGCSGNLK-----------------------------------TYNI 475
           +  AKK+  QM+  GC  N                                     TY++
Sbjct: 396 VDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSV 455

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+  F   G+   A  L   M++KG  P       L++ LCQE  +  A     + +N+ 
Sbjct: 456 LMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
             +     +T +   C++     A  LL  +     H D  ++  ++ +L     +E A
Sbjct: 516 CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEA 574



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 169/401 (42%), Gaps = 19/401 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+ + +L+  G+ D AL+   E   R      +G+   +  FC   ++ +   +++E+  
Sbjct: 314 NTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFS 373

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +    I   V    +I+G C+ ++V++A K+L ++    CKP+ ++Y  +       G+ 
Sbjct: 374 K--GCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNS 431

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +    P    Y   + G   E +  EA +L   ++   F      +N L
Sbjct: 432 LEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLL 491

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+   +    A  F    +  G    +   + +    C+++  +  + +   +  ++ 
Sbjct: 492 IQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNK 551

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLR 452
             D+ +Y  ++  L   GR+ EA  +  +M R GL P    Y +++   CR    EDLL 
Sbjct: 552 HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLL- 610

Query: 453 PAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
              KL ++M +   C      YN +I K    G +E A +L   +L      DA T   L
Sbjct: 611 ---KLLEKMLSRQECR---TAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 664

Query: 512 LEGLCQE----TNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           +E    +     +   A  +FN+++  D+ L   +    M+
Sbjct: 665 IESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLML 705



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/502 (19%), Positives = 210/502 (41%), Gaps = 63/502 (12%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           I P ++T++ L  G+             ++ P    SP  +SY++++  L   ++I  + 
Sbjct: 235 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVR 294

Query: 105 SVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV---KFNCEDIGPEICNSL 160
            ++ K +K + +  D   Y   +  L +  +  +A     E    +F  + +G    +++
Sbjct: 295 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGY---SAI 351

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     +G +D A ++ +EM  +G     + +   I   C+  K+ Q   ML ++ K  +
Sbjct: 352 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYK--H 409

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
                +V    +++G CK     EA ++++        P+ I Y ++   F+  G   E 
Sbjct: 410 GCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEA 469

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE---------------VIVSG 325
             ++++  K G  P   +    I  L  E ++ EAK   E                ++ G
Sbjct: 470 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529

Query: 326 KFTIDDDVLNAL--IGSVSSIDPRSAIVFFNFMIE----KGRV----------------P 363
            F   DD+  AL  +  +   +    +V +  +I+    KGR+                P
Sbjct: 530 -FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIP 588

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           T  T   +    C+  + ++L+++  K+LS  +  T   +YN ++  LC+ G L +AY +
Sbjct: 589 TPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAYKL 645

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++ R     D +  + L+E+   + +   +  +  +MF      +LK    +  K   
Sbjct: 646 LGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLML 705

Query: 483 VGEIEGALRLFHNMLEKG-VAP 503
            G+ E A +L    +E+G ++P
Sbjct: 706 EGKSEEADKLILRFVERGRISP 727


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/523 (23%), Positives = 233/523 (44%), Gaps = 27/523 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++++L    +I    +VL ++          +Y  I+ +  +G   + A  V  ++
Sbjct: 161 TYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 220

Query: 146 KF-NCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               C  D+G   CN +L  +   G +D AL +  ++   G E   + +   +   C   
Sbjct: 221 HARGCALDVGN--CNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAK 278

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V  +++E+  R     N      LI +  C+    E   +VL ++    C PD   
Sbjct: 279 RWGCVQELMEEM-VRMACPPNIVTFNTLISY-LCRNGLFERVHEVLAQMVEHGCTPDIRM 336

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + +     G +     +L +    G+ P    Y   + GL    R  E +EL   + 
Sbjct: 337 YATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF 396

Query: 324 SGKFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
                +DD   N L+      G V  +     I     M+E G +P + T + +    CK
Sbjct: 397 DKDCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLEHGCMPDVITYTTVINGFCK 451

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE V + K ++A     +  SY +++  LC++ R  +A  ++ +M ++G   +   
Sbjct: 452 EGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPIT 511

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L+   C++ L+  A +L  QM  +GCS +L +Y+ +I    + G+ + AL L + M+
Sbjct: 512 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 571

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRR 553
            KG++P+   Y+S+   L +E  +    ++F+     ++  D +L  +++S    SLC+R
Sbjct: 572 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS----SLCKR 627

Query: 554 GHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
           G    A + L  + S   + +  ++ IL++ LA    V+ A E
Sbjct: 628 GETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 670



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 205/457 (44%), Gaps = 42/457 (9%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           P+F   P  +SY+++LK L ++++   +  +++++       +   +  +I  L +    
Sbjct: 256 PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLF 315

Query: 136 QKAFSVFNE-VKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++   V  + V+  C  DI   +  +++  +  +G+++ A ++ + M   G++ + + + 
Sbjct: 316 ERVHEVLAQMVEHGCTPDI--RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYN 373

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +   C   +  +   +L E+  ++  + +  V   +++  FC+   V+   ++L+++ 
Sbjct: 374 TLLKGLCSAERWEETEELLAEMFDKDCPLDD--VTFNILVDFFCQNGLVDRVIELLEQML 431

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD I Y  V   F   G + E  ++LK     G  P T  Y       IV + +C
Sbjct: 432 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT------IVLKGLC 485

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            A+         ++   +D+++ +I     ++P +     NF                  
Sbjct: 486 SAE---------RWVDAEDLMSQMIQQGCPLNPITFNTLINF------------------ 518

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK+   ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P
Sbjct: 519 -LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 577

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +   Y+S+  A  RE  +    +++D +  +    +   YN +IS   + GE E A+   
Sbjct: 578 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 637

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             M+  G  P+ +TYT L+ GL  E  ++ A E+  +
Sbjct: 638 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTE 674



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 43/208 (20%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN MV+  C +G+L  A  +   +    + P+   Y  ++ A C    +  A  + D+M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 463 -----------------------------------ASGCSGNLKTYNILISKFSEVGEIE 487
                                              A GC+ ++   N++++   + G ++
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            AL L  ++   G  PD  +Y ++L+GLC         E+  + V           +T +
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 548 ISLCRRG-----HFLVATKLLRGLSSDL 570
             LCR G     H ++A  +  G + D+
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDI 334



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN +++ +   G++E A RL   +    V P+A TY  ++  LC    +  A  V ++  
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAR 587
                    +    + + CR G F  A ++L     RG + D+G+ +   ++L ++ D  
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQG 243

Query: 588 EVEMAIEHIK 597
            V+ A+  ++
Sbjct: 244 SVDEALHLLR 253


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 198/453 (43%), Gaps = 16/453 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++  +++  LS + +I A   + K ++   +  +  VY  +I  L + +    A  +  +
Sbjct: 127 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 186

Query: 145 VK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K  F   D      N L+  L   G ++ A   FDEM   G +     + + I  FC+ 
Sbjct: 187 MKKAFCTPDTITY--NVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKA 244

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECK 258
                    L      + + ING  I +     I+    K K++EEA  +++++    C 
Sbjct: 245 GNTDAASHSL-----AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCT 299

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P    Y  +      MG + E   +L+K    G  P    Y   I GL  E+R  EA +L
Sbjct: 300 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 359

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            + +      +D     ALI  +      P+++ V+   M   G VP + TLS +   L 
Sbjct: 360 FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY-KTMTSHGCVPDVVTLSTMIDGLS 418

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  +    V ++K + A     +   Y+ ++  LC + ++  A  ++ +MK+    PD  
Sbjct: 419 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 478

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN L++  C+   +  A+  +D+M  +GC  ++ TYNILIS F + G  + A  +F +M
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
                + +  TY +L+ GLC+   L  A   F 
Sbjct: 539 SSSRCSANVVTYGALISGLCKRRQLTKASLYFQ 571



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 218/513 (42%), Gaps = 45/513 (8%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y S++  L   ++      + K++ +  + LD+  Y  +I  L+Q     +A S
Sbjct: 53  TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASS 112

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           V+  +  +     P++   ++++  L+  G I  A+++F  M  RG+  + + +   I  
Sbjct: 113 VYKTMTSH--GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+  K+   L ML +++K   +    ++   ++I G CK   VE A    DE+    CK
Sbjct: 171 LCKARKMDCALEMLAQMKKAFCT--PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCK 228

Query: 259 PDFIAYRI-----------------VAEEFKLMGSVFEREVV------LKKKRKL----- 290
           PD   Y I                 +A+E  + G   +          L K +K+     
Sbjct: 229 PDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVA 288

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
                   G  P    Y   + GL    R+ EA +L   IV    T D     +LI  + 
Sbjct: 289 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 348

Query: 343 SIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             + RS  A   F  M  +G        + L + L +  K  +   VYK ++++    D+
Sbjct: 349 K-EKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDV 407

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            + + M+  L  +GR+  A  + + M+ +GL P+   Y++L+   C+   +  A ++  Q
Sbjct: 408 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 467

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  + C+ +  TYNILI    + G++E A   F  MLE G  PD  TY  L+ G C+  N
Sbjct: 468 MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 527

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             AA  VF+   +             +  LC+R
Sbjct: 528 TDAACGVFDDMSSSRCSANVVTYGALISGLCKR 560



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 198/451 (43%), Gaps = 6/451 (1%)

Query: 81  THSPLSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           T +  +Y+++L  L  + R   AID +L+++  N  T D   Y  +I  L + K + +A+
Sbjct: 18  TPTIATYNALLNGLCKMGRLEEAID-LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 76

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +F E+      +      +L+  L   G I  A  ++  M+  G     +     I   
Sbjct: 77  KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 136

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  ++G  + +   +  R   +    V+   +IHG CK ++++ A ++L +++   C P
Sbjct: 137 SKAGRIGAAVRIFKSMEAR--GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-L 318
           D I Y ++ +     G V        +  + G  P    Y   I G         A   L
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSL 254

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            +       TID     A++  ++       A+     +   G  PT++T + L   LCK
Sbjct: 255 AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCK 314

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + +E +++ + +  N    D+ +Y  ++  L    R  EAY + +EM  +GL  D   
Sbjct: 315 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC 374

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +L+    +   +  A  ++  M + GC  ++ T + +I   S+ G I  A+R+F +M 
Sbjct: 375 YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 434

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            +G+AP+   Y++L+ GLC+   +  A E+ 
Sbjct: 435 ARGLAPNEVVYSALIHGLCKARKMDCALEML 465



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 184/419 (43%), Gaps = 10/419 (2%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           Y +++  L  +R+++    +L Q+K    T D+  Y  +I  L +  + + A + F+E+ 
Sbjct: 164 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNAL-KMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  C+   P++   N L++     G  D A   +  E +  G       +   +    +N
Sbjct: 224 EAGCK---PDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKN 280

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+ + +++++++     +    +  A+L  +G CK  R+EEA  +L ++    C PD +
Sbjct: 281 KKIEEAVALMEKITANGCTPTIATYNALL--NGLCKMGRLEEAIDLLRKIVDNGCTPDVV 338

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +        FE   + K+    G+A  T  Y   I  L+   +I +A  + + +
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            S     D   L+ +I  +S      A V  F  M  +G  P     S L   LCK  K 
Sbjct: 399 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 458

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  +E+   +       D  +YN+++  LC SG +  A     EM   G  PDV  YN L
Sbjct: 459 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 518

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +   C+      A  ++D M +S CS N+ TY  LIS   +  ++  A   F +M E+G
Sbjct: 519 ISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++EEA  +++++    C P    Y  +      MG + E   +L+K    G  P    Y 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIVFFNFMIE 358
             I GL  E+R  EA +L + +      +D     ALI  +      P+++ V +  M  
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSV-YKTMTS 119

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G VP + TLS +   L K  +    V ++K + A     +   Y+ ++  LC + ++  
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++ +MK+    PD   YN L++  C+   +  A+  +D+M  +GC  ++ TYNILIS
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239

Query: 479 KFSEVGEIEGALR-LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            F + G  + A   L       G   D  TYT++++ L +   ++ A  +  K   +   
Sbjct: 240 GFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCT 299

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
              +  +  +  LC+ G    A  LLR +  +    D  V+   SL D 
Sbjct: 300 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD--VVTYTSLIDG 346



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 114/529 (21%), Positives = 204/529 (38%), Gaps = 80/529 (15%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLA 162
           ++++++  N  T   + Y  ++  L +    ++A  +  ++  N     P++    SL+ 
Sbjct: 7   ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN--GCTPDVVTYTSLID 64

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +     A K+F EM+ RG+   T+ +   I +  +  K+ Q               
Sbjct: 65  GLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA-------------- 110

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              SV   +  HG                     C PD +    + +     G +     
Sbjct: 111 --SSVYKTMTSHG---------------------CVPDVVTLSTMIDGLSKAGRIGAAVR 147

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           + K     G+AP    Y   I GL   R++  A E+   +     T D    N LI G  
Sbjct: 148 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLC 207

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD------------------- 382
            S D  +A  FF+ M+E G  P + T + L    CK   +D                   
Sbjct: 208 KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDI 267

Query: 383 -----------------ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                            E V + + ++AN     + +YN +++ LC  GRL EA  ++++
Sbjct: 268 HTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRK 327

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           +   G  PDV  Y SL++   +E     A KL+ +M   G + +   Y  LI +  + G+
Sbjct: 328 IVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGK 387

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           I  A  ++  M   G  PD  T +++++GL +   + AA  +F       +     + S 
Sbjct: 388 IPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSA 447

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
            +  LC+      A ++L  +       D  ++ IL+  L  + +VE A
Sbjct: 448 LIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAA 496



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K +E V + + ++AN     + +YN +++ LC  GRL EA  +++++   G  PDV  Y 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SL++   +E     A KL+ +M   G + +   Y  LI +  + G+I  A  ++  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G  PD  T +++++GL +   + AA  +F       +     + S  +  LC+      A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 560 TKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
            ++L  +       D  ++ +L+  L  + +VE A
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAA 215


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/546 (23%), Positives = 250/546 (45%), Gaps = 31/546 (5%)

Query: 62  THHSLALGFFNWASQQPN-----FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKI 115
           THHSL    F   S   +     +    LS++S++++ S S    +++ +L Q+K  N++
Sbjct: 38  THHSLPPQIFKSPSNTSSHKWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCENRV 97

Query: 116 TLDSSVYRFIIPSLIQGKN--TQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYID 171
            ++ S   FII     GK    QKA  +F+ +  +F+C+       N++L V+  +G  D
Sbjct: 98  FIEKS---FIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSF-NTVLNVVIQEGCFD 153

Query: 172 NALKMF----DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
            AL+ +    D  S   ++ + + F + I   C    + Q + +   +  R N + +G  
Sbjct: 154 LALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDR-NCVADGYT 212

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            + L+ HG C   R++EA  +LDE+++    P+ +A+ ++       G +     ++   
Sbjct: 213 YSTLM-HGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNM 271

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
              G  P    Y   + GL ++ ++ +A  L   +V+ K   +D     L+ G V     
Sbjct: 272 FLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRA 331

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
              +     + EKG      + S+L   L K  K +  ++++K +       +   Y+ +
Sbjct: 332 LDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSAL 391

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  G+  EA   + EMK KG  P+   Y+SLM        +  A  +W +M  + C
Sbjct: 392 IDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDC 451

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + +   Y+ILI+   + G+++ AL ++  ML +G+  D   Y+S++ G C    ++   +
Sbjct: 452 NHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMK 511

Query: 527 VFNKSVNHDVMLARSILSTFMI--SLCRRGHF-----LVATKLLRGLSSDLGHSDSHVIL 579
           +FN+ + H+  L   +++  ++  + C +        ++ T L +G   D    D   I 
Sbjct: 512 LFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCD---IF 568

Query: 580 LKSLAD 585
           LK+L D
Sbjct: 569 LKTLRD 574


>gi|357119238|ref|XP_003561352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Brachypodium distachyon]
          Length = 732

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 234/517 (45%), Gaps = 37/517 (7%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  ++W P +   L +L     + P+LVA V++ +      LAL FF+WA +Q  F H  
Sbjct: 108 RRHQRWGPPVVADLSKL---RRVPPTLVAEVLSAHPPPPPPLALPFFHWAGRQKGFRHCF 164

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++H++   LS +    A D +   ++ +   +       ++      +   +A      
Sbjct: 165 PAFHALASLLSAAGLPAAADQLPDLIRAHGKPVSHPQLTLLVRLHTAARRPLRALYTLR- 223

Query: 145 VKFNCE-DIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +F  E  + P++  CN +L  LA+ G++++ALK+FDEMS  GV    + F + +     
Sbjct: 224 -RFRHEFSVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVRPMPVTFAIIVRALGH 282

Query: 202 NAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
                ++L M+  +R    R +  +  +++  ++  G      +E   +V +E+     +
Sbjct: 283 AGMTERILEMIGRMRDEVCRPDVFVYTALVKTMMRRG-----HIEGCIRVWEEMGTDGVE 337

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD +AY  +       G V +   + ++ RK G+      +   + G + + R+ +   +
Sbjct: 338 PDAMAYATMVGGLCNAGMVEQAAKLFEEMRKKGLLVDRTVFASLVDGYVADGRVGDGCRV 397

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +V   +  D    N LIG +  I     A   F  ++++  VP+  T+S L   +C 
Sbjct: 398 LKEMVDAGYRADLGTYNTLIGGLCGIGREDKAYKMFQIILQEELVPSSETVSQLL--VCY 455

Query: 378 RNKS---------DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
            +K          D+LVE+   L A DY  D      +  F C  GR  +A  V   M++
Sbjct: 456 ADKGEMIKIFGLVDKLVELR--LPATDYLVDF-----LKLFACKDGRELKAVEVFDTMRQ 508

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIE 487
           +G    VS YN ++E   +    + A  L+++M  S  C     TY+ +I  F E G IE
Sbjct: 509 RGYY-SVSTYNIIIENLLKIKERKKALLLFEEMQGSDDCKPESCTYSHMIPCFVEEGNIE 567

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            A   +++M++    P  + Y SL++GLC+   + AA
Sbjct: 568 EACSCYNSMMKAEWIPSISAYCSLVKGLCKIGEINAA 604



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 110/232 (47%), Gaps = 1/232 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P +   + L K + +R   +  + V++ +  +    D  +Y  MV  LC +G + +A  +
Sbjct: 303 PDVFVYTALVKTMMRRGHIEGCIRVWEEMGTDGVEPDAMAYATMVGGLCNAGMVEQAAKL 362

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM++KGL  D + + SL++    +  +    ++  +M  +G   +L TYN LI     
Sbjct: 363 FEEMRKKGLLVDRTVFASLVDGYVADGRVGDGCRVLKEMVDAGYRADLGTYNTLIGGLCG 422

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +G  + A ++F  +L++ + P + T + LL     +  +   F + +K V   +     +
Sbjct: 423 IGREDKAYKMFQIILQEELVPSSETVSQLLVCYADKGEMIKIFGLVDKLVELRLPATDYL 482

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHS-DSHVILLKSLADAREVEMAI 593
           +    +  C+ G  L A ++   +     +S  ++ I++++L   +E + A+
Sbjct: 483 VDFLKLFACKDGRELKAVEVFDTMRQRGYYSVSTYNIIIENLLKIKERKKAL 534



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 70/163 (42%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ ++V  L  +G       +I  M+ +   PDV  Y +L++   R   +    ++W++M
Sbjct: 272 TFAIIVRALGHAGMTERILEMIGRMRDEVCRPDVFVYTALVKTMMRRGHIEGCIRVWEEM 331

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   +   Y  ++      G +E A +LF  M +KG+  D T + SL++G   +  +
Sbjct: 332 GTDGVEPDAMAYATMVGGLCNAGMVEQAAKLFEEMRKKGLLVDRTVFASLVDGYVADGRV 391

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
                V  + V+          +T +  LC  G    A K+ +
Sbjct: 392 GDGCRVLKEMVDAGYRADLGTYNTLIGGLCGIGREDKAYKMFQ 434



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 59/148 (39%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           LR  Y + +      + P V   N ++ A      +  A KL+D+M   G      T+ I
Sbjct: 216 LRALYTLRRFRHEFSVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVRPMPVTFAI 275

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           ++      G  E  L +   M ++   PD   YT+L++ + +  +++    V+ +     
Sbjct: 276 IVRALGHAGMTERILEMIGRMRDEVCRPDVFVYTALVKTMMRRGHIEGCIRVWEEMGTDG 335

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
           V       +T +  LC  G    A KL 
Sbjct: 336 VEPDAMAYATMVGGLCNAGMVEQAAKLF 363


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 15/366 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L S G    AL++  +M       + + +   I  FC   ++   L ++ E+R+
Sbjct: 118 NIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRE 173

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIV----AEEFK 272
           R     N       +I G+CK  RV+EA KV DE+  + E KP+ + Y  +     ++ K
Sbjct: 174 RGGIAPNQYTYGT-VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 232

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L  ++  R+ ++++    GVA     Y   +  L ++ R  EA EL E +       D  
Sbjct: 233 LDTALLYRDRMVER----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 288

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G     + + A+  F  M  +G   T+ T + L   L K+ +  E  +++   
Sbjct: 289 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 348

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YN +++   TSG +  A+ ++ EM++K + PD   YN+LM   C    +
Sbjct: 349 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 408

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+KL D+M   G   +L TYN LIS +S  G+++ ALR+ + M+ KG  P   TY +L
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 468

Query: 512 LEGLCQ 517
           ++GLC+
Sbjct: 469 IQGLCK 474



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 165/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F +M    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQM-PRPNAVTYNTVIA--- 153

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A  ++ E+R R                                   G+
Sbjct: 154 --GFCSRGRVQAALDIMREMRERG----------------------------------GI 177

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           AP    Y   I G     R+ EA K   E++  G+   +  + NALIG       +D  +
Sbjct: 178 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--T 235

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+++ + M+E+G   T++T                                   YN++V 
Sbjct: 236 ALLYRDRMVERGVAMTVAT-----------------------------------YNLLVH 260

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   GR  EAY +++EM  KGL PDV  YN L+   C+E  ++ A ++++ M   G   
Sbjct: 261 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 320

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TY  LI   S+ G+++   +LF   + +G+ PD   Y +L+       N+  AFE+ 
Sbjct: 321 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 380

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M  LC  G    A KL+     RG+  DL
Sbjct: 381 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 427



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 46/297 (15%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L  DG    A ++ +EM  +G+      + + I   C+   + + L + + + +
Sbjct: 256 NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR 315

Query: 218 RENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    +  +V+    +I+   K  +V+E  K+ DE   R  +PD + Y  +       G+
Sbjct: 316 RG---VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 372

Query: 277 V---FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +   FE    ++KKR   +AP    Y   + GL +  R+ EA++L + +       D   
Sbjct: 373 IDRAFEIMGEMEKKR---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 429

Query: 334 LNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI   S   D + A+   N M+ KG  PTL T                         
Sbjct: 430 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT------------------------- 464

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
                     YN ++  LC +G+  +A  +++EM   G+ PD S Y SL+E    ED
Sbjct: 465 ----------YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 511



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 2/263 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++ +L +  +      +++++    +  D   Y  +I    +  N +KA  +F  +
Sbjct: 254 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 313

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                        +L+  L+  G +    K+FDE   RG+    + +   I     +  +
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 373

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+ K+   +    V    ++ G C   RV+EA K++DE+  R  +PD + Y 
Sbjct: 374 DRAFEIMGEMEKKR--IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 431

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   + + G V +   +  +    G  P    Y   I GL    +  +A+ + + +V  
Sbjct: 432 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491

Query: 326 KFTIDDDVLNALIGSVSSIDPRS 348
             T DD    +LI  +++ D R+
Sbjct: 492 GITPDDSTYISLIEGLTTEDERA 514


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 143/604 (23%), Positives = 244/604 (40%), Gaps = 100/604 (16%)

Query: 46  SLSPSLVARVI----NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI- 100
           SLSP  V +++    NP     HS AL  F+  ++ P ++H+P  +H ILK L   + + 
Sbjct: 7   SLSPKRVIKLLKSEKNP-----HS-ALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVA 60

Query: 101 ----------NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE------ 144
                      A+D   +  ++         Y  ++ +LI+     +A S F        
Sbjct: 61  HAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGL 120

Query: 145 ----------VKFNCE----DIGPEICN---------------SLLAVLASDGYIDNALK 175
                     +K +C     D   E+ N               +L+  LA +GY+ +ALK
Sbjct: 121 SPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALK 180

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM  RGV      + + I  F +   +     + + + K  +   N     V+I +G
Sbjct: 181 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMI-NG 239

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  + +E+F++   ++  E   D   Y  +       G++     V K+  + GV+P 
Sbjct: 240 LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPD 299

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
              Y   + G +   RI E  EL +V+                                 
Sbjct: 300 VVVYNTMLNGYLRAGRIEECLELWKVM--------------------------------- 326

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
             EK    T+ + + L + L +  K DE + ++++L   D   D  +Y V+V  LC +G 
Sbjct: 327 --EKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGY 384

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L +A  +++E +    D D   Y+S++   CRE  L     + DQM   GC  N    N 
Sbjct: 385 LNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNA 444

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I+ F    ++E ALR F NM+ KG  P   TY +L+ GL +      A+ +  + +   
Sbjct: 445 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKG 504

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVE 590
                   S  M  LC+     +A  L      +G   D+     H I++  L  + +VE
Sbjct: 505 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDV---KMHNIIIHGLCSSGKVE 561

Query: 591 MAIE 594
            A++
Sbjct: 562 DALQ 565



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 213/480 (44%), Gaps = 28/480 (5%)

Query: 54  RVINPYLLTHHSLALGFFN----------WAS--QQPNFTHSPLSYHSILKSLSLSRQIN 101
           R + P +  ++ L  GFF           W    + P+   +  SY+ ++  L    + +
Sbjct: 188 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 247

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NS 159
               +  ++K N+   D   Y  +I  L    N   A  V+ E+  N   + P++   N+
Sbjct: 248 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN--GVSPDVVVYNT 305

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L      G I+  L+++  M   G   + + + + I    ENAK+ + +S+ + + +++
Sbjct: 306 MLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD 364

Query: 220 ---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
              +SM  G     +++HG CK   + +A  +L+E        D  AY  +       G 
Sbjct: 365 CCADSMTYG-----VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGR 419

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLN 335
           + E   VL +  K G  P        I G +   ++ +A +  G ++  G F       N
Sbjct: 420 LDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV-TYN 478

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI  +S  +  S A      M++KG  P + T S L   LC+  K D  + ++      
Sbjct: 479 TLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 538

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  D++ +N+++  LC+SG++ +A  +  EMK++   P++  +N+LME   +      A
Sbjct: 539 GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERA 598

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            K+WD +   G   ++ +YNI +        I  A+   ++ +++GV P A T+  L++G
Sbjct: 599 SKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQG 658


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/550 (21%), Positives = 223/550 (40%), Gaps = 112/550 (20%)

Query: 67  ALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           ALG +    +Q N  H P  L+Y  ++  LS +R++     VL+++   +   D++    
Sbjct: 24  ALGVY----RQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTV 79

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++ SL  G                                     +D+A ++ +EM HRG
Sbjct: 80  VVQSLCLGDR-----------------------------------VDDARELVEEMLHRG 104

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGK 240
           +  + I +   +   C+  +L + +++++ + +R      G    V+    II GFC+ +
Sbjct: 105 MAANAITYSALVDGLCKCERLDEAVALVETMAER------GCAPTVVTYNSIITGFCRAR 158

Query: 241 RVEEAFKVLDELRIRECKPDFIAY----------RIVAEEFKLMGSVFEREVVLKKKRKL 290
           RV+EA   ++++    C PD I Y          R V    +L+G V  R          
Sbjct: 159 RVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRR---------- 208

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSA 349
           G  P    Y   I GL    R+ +A ++ E +      I     N+LIG    + D   A
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI---TYNSLIGGYCRAGDMDEA 265

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           I     M++    P + T + L    CK  + D+  E+++ + AN    D+ ++  +V  
Sbjct: 266 IRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GR+ +A  +++E+ R+G  P +  YN +++  C+ + +R A++L     + G   N
Sbjct: 326 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPN 385

Query: 470 LKTYNILISKFSEVGEIEGALR-------------------------------------L 492
             TYNIL++     G  + AL+                                      
Sbjct: 386 TVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQF 445

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +  M+++G  P A T+ +++  LC+    Q A E+  + + +            + + CR
Sbjct: 446 YEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCR 505

Query: 553 RGHFLVATKL 562
            G    A +L
Sbjct: 506 AGMIQKADEL 515



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 156/343 (45%), Gaps = 5/343 (1%)

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           M  G+++  ++I G C+  R+  A  V  ++      PDF+ Y  +         + +  
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAV 59

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            VL++       P        +  L +  R+ +A+EL E ++      +    +AL+  +
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +    A+     M E+G  PT+ T +++    C+  + DE     + + A     D+
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y  ++   C S  +     ++ E+ R+G  PD+  Y+++++  C+   LR A  ++++
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 239

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M    C+    TYN LI  +   G+++ A+RL   M++   APD  TYT+L+   C+   
Sbjct: 240 M---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGR 296

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           L  A+E+F + V + +       ++ +  LC  G    A +LL
Sbjct: 297 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELL 339



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A+     M+    VP  +TL+ + ++LC  ++ D+  E+ + +       +  +Y+ +
Sbjct: 56  RDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSAL 115

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V  LC   RL EA  +++ M  +G  P V  YNS++   CR   +  A    +QM A GC
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TY  LI  F +  ++   L L   +  +G  PD  TY+++++GLC+   L+ A +
Sbjct: 176 HPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 235

Query: 527 VFNK-SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +F + S     +   S++  +    CR G    A +LL  +  D
Sbjct: 236 IFEEMSCAPTAITYNSLIGGY----CRAGDMDEAIRLLGKMVDD 275



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 163/396 (41%), Gaps = 19/396 (4%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSL 94
           +L  ++  R   P ++T++S+  GF           +  Q       P  ++Y +++   
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGF 189

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
             SR +     +L +V     T D   Y  +I  L +    + A  +F E+      I  
Sbjct: 190 CKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI-- 247

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
              NSL+      G +D A+++  +M         + +   +  FC+  +L     +  +
Sbjct: 248 -TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ 306

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +    N +    V    ++ G C   R+E+A ++L+E+  R C P    Y  V + +   
Sbjct: 307 MVA--NKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDV 333
             V + E ++   R  G  P T  Y   + G     R  +A + L ++   G        
Sbjct: 365 NQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVA 424

Query: 334 LNALIGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           + A+I      D R+  A+ F+  MI++G VP  +T + +   LCK ++  +  E+ + +
Sbjct: 425 MYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEM 484

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
               +     + + +VS  C +G +++A  +  E++
Sbjct: 485 IKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + L   L K  +  + V+V + + +  +  D  +  V+V  LC   R+ +A  +
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++EM  +G+  +   Y++L++  C+ + L  A  L + M   GC+  + TYN +I+ F  
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              ++ A      M+ +G  PD  TYT+L+ G C+  ++    E+  +            
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 543 LSTFMISLCRRGHFLVATKLLRGLS 567
            ST +  LC+ G    A  +   +S
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEMS 241


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 236/509 (46%), Gaps = 46/509 (9%)

Query: 78  PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITL-------------DSS 120
           PNF H+ LS     H +++S  LS   + +  ++++  V+++ +             + S
Sbjct: 97  PNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDS 156

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           V+  +I + +Q +  ++A+  F  ++     +  + CN+L+  L   G+++ A +++ E+
Sbjct: 157 VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI 216

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
           S  GV  +     + +   C++ K+ +V + L EV+  E  +    V    +I  +    
Sbjct: 217 SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQ--EKGVYPDIVTYNTLISAYSSQG 274

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            +EEAF+++  +  +   P    Y  V       G     + V  +  + G++P +  YR
Sbjct: 275 LMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 334

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALI--GSVSSIDPRS-----AI 350
             ++         EA + G+ + +     D    DV+  L+   S+ S+  RS     A+
Sbjct: 335 SLLM---------EACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 385

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           ++FN + E G +P     + L +  C++    E + +   +       D+ +YN ++  L
Sbjct: 386 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGL 445

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C    L EA  +  EM  +GL PD      L++  C+   L+ A +L+ +M       ++
Sbjct: 446 CKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDV 505

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN- 529
            TYN L+  F +VG+I+ A  ++ +M+ K + P   +++ L+  LC + +L  AF V++ 
Sbjct: 506 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDE 565

Query: 530 ---KSVNHDVMLARSILSTFMISLCRRGH 555
              KS+   VM+  S++  +    CR G+
Sbjct: 566 MISKSIKPTVMICNSMIKGY----CRSGN 590



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 221/466 (47%), Gaps = 22/466 (4%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           + P ++T+++L   +         F      P+   SP   +Y++++  L    +     
Sbjct: 256 VYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAK 315

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-IC-NSLLA 162
            V  ++  + ++ DS+ YR ++    +  +  +  ++F++++    D+ P+ +C +S+++
Sbjct: 316 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMR--SRDVVPDLVCFSSMMS 373

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           +    G +D AL  F+ +   G+    + + + I  +C    + + +++ +E+ ++  +M
Sbjct: 374 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAM 433

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
               V    I+HG CK K + EA K+ +E+  R   PD     I+ +    +G++     
Sbjct: 434 --DVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAME 491

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           + KK ++  +      Y   + G      I  AKE+   +VS +        + L+ ++ 
Sbjct: 492 LFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALC 551

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKR-NKSDELVEVYKVLSANDYFTDM 400
           S    S A   ++ MI K   PT+   +++ K  C+  N SD  + + K++S   +  D 
Sbjct: 552 SKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG-FVPDC 610

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLW 458
            SYN ++        + +A+G++++M+ K  GL PDV  YNS++   CRE+ ++ A+ + 
Sbjct: 611 ISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVL 670

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            +M   G + +  TY  LI+ F     +  A R    ML++G +PD
Sbjct: 671 RKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 148/342 (43%), Gaps = 46/342 (13%)

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID------------PRSA 349
            I   +  R++ EA E   ++ S  +T+  D  NALIGS+  I              RS 
Sbjct: 161 LIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSG 220

Query: 350 I------------------------VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           +                         F + + EKG  P + T + L      +   +E  
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-LMEA 444
           E+   + +  +   + +YN +++ LC  G+   A  V  EM R GL PD + Y S LMEA
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 340

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           C + D +   + ++  M +     +L  ++ ++S F+  G ++ AL  F+++ E G+ PD
Sbjct: 341 CKKGDAVE-TENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 399

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL- 563
              YT L++G C++  +  A  + N+ +     +     +T +  LC+R     A KL  
Sbjct: 400 NVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 459

Query: 564 ----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
               RGL  D   S +  IL+        ++ A+E  K ++E
Sbjct: 460 EMTERGLFPD---SYTLTILIDGHCKLGNLQNAMELFKKMKE 498



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 140/352 (39%), Gaps = 58/352 (16%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +S  +N  + +L+Q       +D   Y  I+  L + K   +A  +FNE+      + P+
Sbjct: 416 ISEAMNLRNEMLQQ----GCAMDVVTYNTILHGLCKRKMLGEADKLFNEM--TERGLFPD 469

Query: 156 ICNSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
              S    +  DG+     + NA+++F +M  + ++   + +   +  F    K+G +  
Sbjct: 470 ---SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF---GKVGDI-- 521

Query: 211 MLDEVRKRENSMINGSVIAV-----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
             D  ++    M++  ++       ++++  C    + EAF+V DE+  +  KP  +   
Sbjct: 522 --DTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICN 579

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + +   G+  + E+ L+K    G  P    Y   I G + E  + +A          
Sbjct: 580 SMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKA---------- 629

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                        G V  ++ +          + G VP + T +++    C+ N+  E  
Sbjct: 630 ------------FGLVKKMEEK----------QGGLVPDVFTYNSILHGFCRENQMKEAE 667

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            V + +       D  +Y  +++   +   L EA+    EM ++G  PD  F
Sbjct: 668 AVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 222/486 (45%), Gaps = 13/486 (2%)

Query: 88  HSILKSLSLSRQ---INAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           HS L+S +  RQ   ++A+D VL Q+  +  I  D+ VY  ++  L++G   +   +V++
Sbjct: 117 HSFLESYA--RQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYS 174

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           E+      I P++   N+L+  L     +  A+ M +EMS  GV      F   +  F E
Sbjct: 175 EM--GERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVE 232

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              +   L +  + R  E       V   ++I+G+CK  RVE+A   + +      +PD 
Sbjct: 233 EGSIKAALRV--KARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQ 290

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y          G V     V+    + G  P    Y   +  L    ++ EAK +   
Sbjct: 291 ITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 350

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +V      D    N LI ++ S +    A+     +  KG  P + T + L   LCK   
Sbjct: 351 MVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGD 410

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
               + +++ + ++    D  +YN ++  LC+ G+L +A  +++EM+  G       YN+
Sbjct: 411 PQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNT 470

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++  C++  +  A++++DQM   G S N  T+N LI    +   I+ A +L   M+ +G
Sbjct: 471 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEG 530

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           + P+  TY S+L   C++ +++ A ++      +   +      T +  LC+ G   VA 
Sbjct: 531 LQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVAL 590

Query: 561 KLLRGL 566
           KLLRG+
Sbjct: 591 KLLRGM 596



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 214/510 (41%), Gaps = 47/510 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF-I 125
           AL   N A  + +F   P  Y  I++ L  +     +  VL    V ++  +    R  +
Sbjct: 60  ALRMLNAALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVL----VTEMRREGHQVRVGV 115

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCED--IGPE----ICNSLLAVLASDGYIDNALKMFDE 179
           + S ++    Q+ F    ++  N  D   G +    + N LL VL     +     ++ E
Sbjct: 116 VHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSE 175

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  RG++   + F   +   C   ++   + ML+E+    + +         ++ GF + 
Sbjct: 176 MGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSS--SGVAPDETTFTTLMQGFVEE 233

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             ++ A +V   +    C P  +   ++   +  +G V +    ++++   G  P    Y
Sbjct: 234 GSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITY 293

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
             F+ GL      C+   +G                             A+   + M+++
Sbjct: 294 NTFVNGL------CQNGHVGH----------------------------ALKVMDVMVQE 319

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + T + +   LCK  + +E   +   +       D+ ++N ++  LC+  RL EA
Sbjct: 320 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + +++  KGL PDV  +N L+ A C+    + A +L+++M +SGC+ +  TYN LI  
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              +G++  AL L   M   G      TY ++++GLC++  ++ A EVF++     +   
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSD 569
               +T +  LC+      A +L+  + S+
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISE 529


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 216/448 (48%), Gaps = 20/448 (4%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
           F++ SL++    +K++ VF  ++   + + P++   ++ +      G +++A+++F +M 
Sbjct: 284 FLLSSLVKANELEKSYWVFETMR---QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME 340

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGF 236
             GV  + + +   I   C++  L       DE  + +  M+   V A LI     I+G 
Sbjct: 341 KLGVSPNVVTYNNLIHGLCKHGNL-------DEAFRFKEKMVKDGVNATLITYSVLINGL 393

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K ++  EA  VL E   +   P+ + Y  + + +  MG++ +   +       G+ P +
Sbjct: 394 MKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNS 453

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFN 354
                 I G     ++ +A+ + E ++S  F+I+      +I  +  ++ R  SA+ F  
Sbjct: 454 VTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC-MNSRFESALRFLR 512

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +   P    L+ L   LCK  K  + VE++  L    +  ++ + N ++  LC +G
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 572

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  ++++M  +G   D   YN+L+  CC+E  +    KL  +M   G   +  TYN
Sbjct: 573 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 632

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +LI     +G+++ A+ L++    + + P+  TY  +++G C+   ++   ++F + +  
Sbjct: 633 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKL 562
           ++ L   + +T + + CR G+ + A KL
Sbjct: 693 NLELNSVVYNTLIRAYCRNGNTVEAFKL 720



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 193/436 (44%), Gaps = 17/436 (3%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYI 170
           ++ D  ++   I +  +G   + A  +F    F+ E +G  P +   N+L+  L   G +
Sbjct: 309 VSPDVYLFSTAINAFCKGGKVEDAIQLF----FDMEKLGVSPNVVTYNNLIHGLCKHGNL 364

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A +  ++M   GV  + I + V I    +  K  +  S+L E    E       V+  
Sbjct: 365 DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETL--EKGFTPNEVVYN 422

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I G+CK   + +A ++  ++  +   P+ +    + + F  +G + + E +L++    
Sbjct: 423 TLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 482

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G +     +   I  L +  R   A      ++      +D +L  L+G +      S  
Sbjct: 483 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 542

Query: 351 VFFNF-MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           V   F ++EKG    L T + L   LCK     E V + K +    +  D  +YN ++S 
Sbjct: 543 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISG 602

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G++ E + +  EM ++G++PD   YN L+   CR   L  A  LW++  +     N
Sbjct: 603 CCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 662

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY ++I  + +  +IE   +LF  +L + +  ++  Y +L+   C+  N   AF++  
Sbjct: 663 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL-- 720

Query: 530 KSVNHDVMLARSILST 545
               HD M ++ I  T
Sbjct: 721 ----HDDMRSKGIPPT 732



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 187/446 (41%), Gaps = 5/446 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I  L++ +   +A SV  E           + N+L+      G + +AL++  +M
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +G+  +++     I  FC+  ++ Q   +L+E+  R  S+  G+     IIH  C   
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT--IIHWLCMNS 502

Query: 241 RVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           R E A + L E+ +R  +P D +   +V    K        E+  +   K G        
Sbjct: 503 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK-GFGANLVTT 561

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL     + EA  L + ++   F +D    N LI G                M++
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P   T + L   +C+  K DE V ++    + D   ++ +Y VM+   C + ++ E
Sbjct: 622 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
              +  E+  + L+ +   YN+L+ A CR      A KL D M + G      TY+ LI 
Sbjct: 682 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 741

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
               +G +E A  L   M ++G+ P+   YT+L+ G C+   +     V  +  ++D+  
Sbjct: 742 GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP 801

Query: 539 ARSILSTFMISLCRRGHFLVATKLLR 564
            +   +  +    + G    A KLL 
Sbjct: 802 NKITYTVMIDGYSKSGDMKTAAKLLH 827



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 198/472 (41%), Gaps = 5/472 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++  L    + N  +SVLK+      T +  VY  +I    +  N   A  +  +
Sbjct: 384 ITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD 443

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +      NS++      G ++ A  + +EM  RG   +   F   I   C N++
Sbjct: 444 MVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 503

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
               L  L E+  R N   N  ++  L+  G CK  +  +A ++   L  +    + +  
Sbjct: 504 FESALRFLREMLLR-NMRPNDGLLTTLV-GGLCKEGKHSDAVELWFRLLEKGFGANLVTT 561

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIV 323
             +       G++ E   +LKK  + G       Y   I G   E ++ E  +L GE++ 
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            G    D    N LI  +  I     A+  +N    +  VP + T   +    CK +K +
Sbjct: 622 QG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIE 680

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  +++  L   +   +   YN ++   C +G   EA+ +  +M+ KG+ P  + Y+SL+
Sbjct: 681 EGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C    +  AK L D+M   G   N+  Y  LI  + ++G+++  + +   M    + 
Sbjct: 741 HGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIH 800

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           P+  TYT +++G  +  +++ A ++ ++ V   ++      +      C+ G
Sbjct: 801 PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEG 852



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 36/300 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L++    +G ++   K+  EM  +G+E  T  + + I   C   KL + +++ +E + 
Sbjct: 597 NTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS 656

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R+  ++       ++I G+CK  ++EE  K+  EL  +  + + + Y  +   +   G+ 
Sbjct: 657 RD--LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +    R  G+ P T  Y   I G+    R+ +AK L          ID+      
Sbjct: 715 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCL----------IDE------ 758

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M ++G +P +   + L    CK  + D++V V + +S+ D  
Sbjct: 759 ------------------MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIH 800

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            +  +Y VM+     SG ++ A  ++ EM  KG+ PD   YN L    C+E  +   K L
Sbjct: 801 PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL 860



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+AI  F F+  KG  PT+ T + L  +L K N+ ++   V++ +       D+  ++  
Sbjct: 261 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQG-VSPDVYLFSTA 319

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C  G++ +A  +  +M++ G+ P+V  YN+L+   C+   L  A +  ++M   G 
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 379

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +  L TY++LI+   ++ +   A  +    LEKG  P+   Y +L++G C+  NL  A  
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
           +    V+  +      L++ +   C+ G    A  +L     RG S + G
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 489



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 101/236 (42%), Gaps = 2/236 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ ++  +    +++   ++  + K   +  +   Y  +I    +    ++   +F E
Sbjct: 629 FTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 688

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     ++   + N+L+     +G    A K+ D+M  +G+  +T  +   I   C   +
Sbjct: 689 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGR 748

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +     ++DE+RK    ++   V    +I G+CK  ++++   VL E+   +  P+ I Y
Sbjct: 749 MEDAKCLIDEMRKE--GLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            ++ + +   G +     +L +    G+ P T  Y     G   E +I E K L E
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAE 862


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 201/440 (45%), Gaps = 23/440 (5%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  +   G +D A+ +  +++  G E   + +   +   C   + G V  ++DE+ 
Sbjct: 184 CNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM- 242

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            R +   N      LI +  C+    E   +VL ++    C PD   Y  + +     G 
Sbjct: 243 VRVDCAPNIVTFNTLIGY-LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L +    G+ P    Y   + GL    R  EA+EL   +      +DD   N 
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 337 LI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           L+      G V  +     I     M+  G +P + T + +    CK    DE V + K 
Sbjct: 362 LVDFFCQNGLVDRV-----IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S+     +  SY +++  LC++GR  +A  ++ +M ++G  P+   +N+L+   C++ L
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L  QM  +GCS +L +Y+ +I    + G+ E AL L + M+ KG++P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 511 LLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +   L +E  +    ++F+     ++  D +L  +++S    SLC+R     A      +
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS----SLCKRWETDRAIDFFAYM 592

Query: 567 SSD--LGHSDSHVILLKSLA 584
            S+  + +  ++ +L+K LA
Sbjct: 593 VSNGCMPNESTYTMLIKGLA 612



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 209/473 (44%), Gaps = 45/473 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+++LK L ++++   ++ ++ ++    + +D +       +LI        F   +E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEM----VRVDCAPNIVTFNTLIGYLCRNGLFERVHE 272

Query: 145 VKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V     + G  P+I    +++  +  +G+++ A ++ + M   G++ + + +   +   C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  +   +L E+ +++  +    V   +++  FC+   V+   ++L+++    C PD
Sbjct: 333 SAERWKEAEELLSEMFQKDCPL--DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R  +A+EL  
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL-- 448

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                                            + MI++G  P   T + L   LCK+  
Sbjct: 449 --------------------------------MSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +  A  RE  +    +++D +  +    +   YN +IS   +  E + A+  F  M+  G
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG 596

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             P+ +TYT L++GL  E   + A E+ ++  +    L + ++  F IS C +
Sbjct: 597 CMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGA-LRKHLMRHFGISNCTQ 648



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 129/315 (40%), Gaps = 21/315 (6%)

Query: 292 VAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           V P    +   + GL    RI +A E L E+   G   I       L  +  S   R+++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  KG        + +   +C++   DE V + + L+      D+ SYN ++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   ++ EM R    P++  +N+L+   CR  L     ++  QM   GC+ ++
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + Y  +I    + G +E A  + + M   G+ P+   Y ++L+GLC     + A E+ ++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 531 SVNHDVMLARSILSTFMISLCRRG-------------------HFLVATKLLRGLSSDLG 571
               D  L     +  +   C+ G                     +  T ++ G   + G
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE-G 405

Query: 572 HSDSHVILLKSLADA 586
             D  V+LLKS++  
Sbjct: 406 LIDEAVMLLKSMSSC 420


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 190/437 (43%), Gaps = 45/437 (10%)

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           GP++   N+++A     G +D A +   E   R VE         I   C   +    L+
Sbjct: 125 GPDVMAYNAMMAGYCGAGQVDAARRWCAE---RAVERDAYTCDTLIRGLCGRGRTANALA 181

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +LDE+ +R    +   V   +++   CK    ++A K+LDE+R + C PD + Y +V   
Sbjct: 182 VLDEMLRRR--CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 239

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
               G V +    LK     G  P T  Y   + GL    R  +A+EL GE         
Sbjct: 240 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE--------- 290

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                                     M +KG  P + T + L   LC++   +  +EV +
Sbjct: 291 --------------------------MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE 324

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +       +  SYN ++   C   ++ +A   +  M  +G  PD+  YN+L+ A CR  
Sbjct: 325 QIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSG 384

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +L  Q+   GC+  L +YN +I   ++ G+ + AL L + M+ KG+ PD  TY+
Sbjct: 385 EVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 444

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           ++  GLC+E  ++ A   F K  +  +     + +  ++ LC+R     A  L   +  +
Sbjct: 445 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 504

Query: 570 --LGHSDSHVILLKSLA 584
             + +  ++ IL++ LA
Sbjct: 505 GCMPNESTYTILIEGLA 521



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 130/300 (43%), Gaps = 11/300 (3%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y+ ++  +    +++     LK +       ++  Y  ++  L   +  + A  
Sbjct: 227 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 286

Query: 141 VFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +  E+ +  C    P +   N L++ L   G ++ AL++ +++   G   +++ +   + 
Sbjct: 287 LMGEMGQKGCP---PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            FC+  K+ + ++ LD +  R        V    ++   C+   V+ A ++L +L+ + C
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSR--GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-K 316
            P  I+Y  V +     G   E   +L +    G+ P    Y     GL  E RI +A +
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 461

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
             G+V   G    +  + NA+I G     +  SAI  F +MI  G +P  ST + L + L
Sbjct: 462 AFGKVQDMG-IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 520



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           + C  ++  YN +++ +   G+++ A R      E+ V  DA T  +L+ GLC       
Sbjct: 122 AACGPDVMAYNAMMAGYCGAGQVDAARRWCA---ERAVERDAYTCDTLIRGLCGRGRTAN 178

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVI 578
           A  V ++ +    +      +  + + C+R  +  A KLL     +G + D+    ++ +
Sbjct: 179 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI---VTYNV 235

Query: 579 LLKSLADAREVEMAIEHIK 597
           ++  +     V+ AIE +K
Sbjct: 236 VVNGICQEGRVDDAIEFLK 254


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 185/400 (46%), Gaps = 12/400 (3%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C SL+      G    A ++ + + + G     I + V I  +C++ ++ + L +L+ + 
Sbjct: 145 CTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM- 203

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
               S+    V    I+   C   +++EA +VLD    REC PD I Y I+ E       
Sbjct: 204 ----SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSG 259

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSG---KFTIDDD 332
           V +   +L + RK G  P    Y   I G+  E R+ EA K L  + + G        + 
Sbjct: 260 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNI 319

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           +L ++  +   +D   A      M+ KG  P++ T + L   LC++      ++V + + 
Sbjct: 320 ILRSMCSTGRWMD---AERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 376

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +    +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+L+ A C++    
Sbjct: 377 KHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKAD 436

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A ++ +Q+ + GCS  L TYN +I   ++VG+ E A  L   M  KG+ PD  TY++LL
Sbjct: 437 AAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLL 496

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            GL  E  +  A ++F+      +  +    +  M+ LC+
Sbjct: 497 RGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 179/401 (44%), Gaps = 10/401 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +     KA  V   +      + P++   N++L  L   G +  A++
Sbjct: 176 DVITYNVLIGGYCKSGEIDKALQVLERM-----SVAPDVVTYNTILRSLCDSGKLKEAME 230

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D    R      I + + I   C ++ +GQ + +LDE+RK+        V   ++I+G
Sbjct: 231 VLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK--GCKPDVVTYNVLING 288

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+ + +  C+P+ I + I+       G   + E +L    + G +P 
Sbjct: 289 ICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +R +  A ++ E +       +    N L+ G         AI +  
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + L   LCK  K+D  VE+   LS+      + +YN ++  L   G
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 468

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +   A  +++EM+RKGL PD+  Y++L+     E  +  A K++  M       +  TYN
Sbjct: 469 KTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYN 528

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++    +  +   A+     M+EKG  P   TYT L+EG+
Sbjct: 529 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F   MI +G +P +   ++L +  C+  K+ +   + ++L  +    D+ +YNV++   C
Sbjct: 129 FLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYC 188

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            SG + +A   +Q ++R  + PDV  YN+++ + C    L+ A ++ D+     C  ++ 
Sbjct: 189 KSGEIDKA---LQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVI 245

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY ILI        +  A++L   M +KG  PD  TY  L+ G+C+E  L  A +  N  
Sbjct: 246 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 305

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             +         +  + S+C  G ++ A +LL
Sbjct: 306 PLYGCQPNVITHNIILRSMCSTGRWMDAERLL 337



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 41/370 (11%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EE  K L+ +  +   PD IA   +   F   G   +   +++     G  P    Y  
Sbjct: 123 LEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNV 182

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            I G       C++ E+            D  L  L         R ++           
Sbjct: 183 LIGGY------CKSGEI------------DKALQVL--------ERMSV----------- 205

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + + ++LC   K  E +EV       + + D+ +Y +++   C    + +A  
Sbjct: 206 APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMK 265

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ EM++KG  PDV  YN L+   C+E  L  A K  + M   GC  N+ T+NI++    
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMC 325

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G    A RL  +ML KG +P   T+  L+  LC++  L  A +V  K   H  M    
Sbjct: 326 STGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSL 385

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWI 599
             +  +   C+      A + L  + S   + D  ++  LL +L    + + A+E +  +
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 600 --QESSPTML 607
             +  SP ++
Sbjct: 446 SSKGCSPVLI 455



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+ +  L  +G L E    ++ M  +G  PDV    SL+   CR    R A ++ + +  
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG   ++ TYN+LI  + + GEI+ AL++   M    VAPD  TY ++L  LC    L+ 
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKE 227

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           A EV ++ +  +        +  + + C       A KLL
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLL 267


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/519 (22%), Positives = 227/519 (43%), Gaps = 19/519 (3%)

Query: 88  HSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H++ LKS  L+ + +    +L+ +         + Y  ++  L    +   A  +F+E+ 
Sbjct: 144 HTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEML 203

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               D+ P++   N++L  L   G +  +  +  ++  RG+  +     ++I   CE+ +
Sbjct: 204 G--RDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGR 261

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           L + +++++    R  + +   V+    ++ G CK  +V+EA + L  +  + C PD   
Sbjct: 262 LEEAVALVE----RMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFT 317

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +   G + E   +LK     G  P    Y   I GL  E  I  A EL     
Sbjct: 318 YNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQ 377

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +     D  V N+L+ G         A+   N M+E+G  P + T + +   LCK     
Sbjct: 378 AKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNIS 437

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   V        Y  D+ ++N ++   C   +L  A  +++ M   G+ PDV  YNS++
Sbjct: 438 DAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVL 497

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+    +   + +++M   GC  N  TYNILI  F ++ ++E A  +   M + G+ 
Sbjct: 498 NGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLV 557

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           PDA ++ +L+ G C+  +L  A+ +F K             +  + +   + +  +A K+
Sbjct: 558 PDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKI 617

Query: 563 L-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
                 +G   DL    ++ IL+  L  A  V+ A  H+
Sbjct: 618 FGEMISKGYKPDLY---TYRILVDGLCKAANVDRAYAHL 653



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 166/394 (42%), Gaps = 11/394 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++      G +  A ++  +   +G     + +   I   C    + + L + +E + 
Sbjct: 319 NTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQA 378

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           ++  +    V+   ++ G C+   +  A +V++E+    C PD   Y I+      MG++
Sbjct: 379 KD--LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNI 436

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDV 333
            +  VV+      G  P    +   I G     ++  A +L E + +     D    + V
Sbjct: 437 SDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSV 496

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L  +  + +       F  MI KG  P   T + L +N CK N+ +E   V   +  
Sbjct: 497 LNGLCKAGKAKEVNET---FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQ 553

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D  S+N ++   C +G L  AY + Q++  KG       +N L+ A   +  ++ 
Sbjct: 554 DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQM 613

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+K++ +M + G   +L TY IL+    +   ++ A      M+ KG  P   T+  +L 
Sbjct: 614 AEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLN 673

Query: 514 GLCQETNLQAAFEVFNKSVNHDVM--LARSILST 545
            L     +  A  + +  V   V+  +  +ILST
Sbjct: 674 LLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILST 707



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 9/361 (2%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F    ++Y S++  L     I     +  + +   +  D  VY  ++  L +      A
Sbjct: 345 GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 404

Query: 139 FSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             V NE V+  C    P+I   N ++  L   G I +A  + ++   +G       F   
Sbjct: 405 LQVMNEMVEEGCH---PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTL 461

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I  +C+  KL   L +++  R     +    +    +++G CK  + +E  +  +E+ ++
Sbjct: 462 IDGYCKRLKLDSALQLVE--RMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILK 519

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C+P+ I Y I+ E F  +  + E   V+ +  + G+ P    +   I G      +  A
Sbjct: 520 GCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGA 579

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L + +    ++   D  N LIG+ SS ++ + A   F  MI KG  P L T   L   
Sbjct: 580 YLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDG 639

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK    D        + +  +   M ++  M++ L  + R+ EA  +I  M R G+ P+
Sbjct: 640 LCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPE 699

Query: 435 V 435
           V
Sbjct: 700 V 700



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 1/209 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P   T +   K+ C   +    + + + LS         +Y  +V  L   G 
Sbjct: 132 MLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGH 191

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              A  +  EM  + + PDV+ +N+++ A C++  +  +  L  ++   G S N  T NI
Sbjct: 192 GYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNI 251

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
            I    E G +E A+ L   M    VAPD  TY +L+ GLC+++ +Q A +   + +N  
Sbjct: 252 WIRGLCEDGRLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQG 310

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLR 564
            +      +T +   C+ G    AT+LL+
Sbjct: 311 CIPDDFTYNTIIDGYCKSGMLQEATELLK 339



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +GRLR A    + M      P    YN++M+A         A K++ +M A+G + + +T
Sbjct: 84  AGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDART 143

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           + + +  F   G    ALRL  ++ E+G       Y +++ GL    +   A  +F++ +
Sbjct: 144 HTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEML 203

Query: 533 NHDVMLARSILSTFMISLCRRGHF-----LVATKLLRGLSSD 569
             DV    +  +  + +LC++G       L+A  L RG+S++
Sbjct: 204 GRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSAN 245


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 172/396 (43%), Gaps = 39/396 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++A     G +D A ++  +M    +E  +  +   I   C   + G  L +LD++ +
Sbjct: 128 NAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLR 184

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    +   V   +++   CK    ++A K+LDE+R + C PD I Y +V       G V
Sbjct: 185 R--GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRV 242

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +    LK     G  P T  Y   + GL    R  +A++L                   
Sbjct: 243 DDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKL------------------- 283

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M +KG  P + T + L   LC+R   +  +EV   +      
Sbjct: 284 ---------------MAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCT 328

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+L+ A CR   +  A +L
Sbjct: 329 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVEL 388

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             Q+   GC+  L +YN +I   ++ G+ + AL L + M+ KG+ PD  TY+++  GLC+
Sbjct: 389 LHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCR 448

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           E  ++ A   F K  +  +     + +  ++ LC+R
Sbjct: 449 EDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKR 484



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 183/394 (46%), Gaps = 11/394 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L   G   NAL + D+M  RG     + + + +   C+ +   Q + +LDE+R 
Sbjct: 160 NTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRA 219

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +        +   ++++G C+  RV++A + L  L    C+P+ ++Y IV +        
Sbjct: 220 K--GCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERW 277

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AKELGEVIVSGKFTIDDDVLNA 336
            + E ++ +  + G  P    +   ++  +  R + E A E+ + I     T +    N 
Sbjct: 278 EDAEKLMAEMSQKGYPPNVVTF-NMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNP 336

Query: 337 LIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ +         A+ F   M+ +G  P + + + L   LC+  + D  VE+   L    
Sbjct: 337 ILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG 396

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + SYN ++  L  +G+ +EA  ++ EM  KGL PD+  Y+++    CRED +  A 
Sbjct: 397 CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAI 456

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + + ++   G   N   YN ++    +  E   A+ LF  M+  G  P+ +TYT L+EGL
Sbjct: 457 RAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGL 516

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             E  ++ A E+  +      + +R ++S  +I+
Sbjct: 517 TYEGLVKEARELLGE------LCSRGVVSKGLIN 544



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 170/382 (44%), Gaps = 36/382 (9%)

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L + L +++ +   E S   G   A  +I   C   R  EA +VL       C+PD +AY
Sbjct: 75  LEEALRLVESMSGLEPSAAPGPCAA--LIKKLCASGRTAEARRVL-----AACEPDVMAY 127

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   + + G +   +   +    + + P +  Y   I GL      C     G  +V 
Sbjct: 128 NAMVAGYCVTGQL---DAARRLVADMPMEPDSYTYNTLIRGL------CGRGRTGNALV- 177

Query: 325 GKFTIDD--------DVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
               +DD        DV+   I    +      + A+   + M  KG  P + T + +  
Sbjct: 178 ---VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVN 234

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            +C+  + D+ +E  K L ++    +  SYN+++  LCT+ R  +A  ++ EM +KG  P
Sbjct: 235 GICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPP 294

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V  +N L+   CR  L+ PA ++ DQ+   GC+ N  +YN ++  F +  +++ A+   
Sbjct: 295 NVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 354

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             M+ +G  PD  +Y +LL  LC+   + AA E+ ++  +          +T +  L + 
Sbjct: 355 ELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 414

Query: 554 GHFLVATKLL-----RGLSSDL 570
           G    A +LL     +GL  D+
Sbjct: 415 GKTKEALELLNEMVTKGLQPDI 436



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 12/223 (5%)

Query: 76  QQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           Q P +  +P  LSY+ IL +    ++++   + ++ +       D   Y  ++ +L +G 
Sbjct: 321 QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGG 380

Query: 134 NTQKAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
               A  + +++K   C  +     N+++  L   G    AL++ +EM  +G++   I +
Sbjct: 381 EVDAAVELLHQLKDKGCTPVLISY-NTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITY 439

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
                  C   ++ + +    +V+    R N+++  +     I+ G CK +    A  + 
Sbjct: 440 STISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNA-----ILLGLCKRRETHNAIDLF 494

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             +    C P+   Y I+ E     G V E   +L +    GV
Sbjct: 495 IYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGV 537


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/522 (22%), Positives = 225/522 (43%), Gaps = 68/522 (13%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLS-----------------------LSRQINAI 103
           AL  F+  S++ +   +P  Y +I+  L+                        SR   ++
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EICNSLL 161
            +VL +++ +K T   +V+  +I +  +    ++A  V+ ++     D+ P  + CN +L
Sbjct: 113 FNVLSRLESSKFT--PNVFGVLIIAFSEMGLVEEALWVYYKM-----DVLPAMQACNMVL 165

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  D   K++ +M  RG   + + +G  I   C      +   + DE+   E  
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI--EKK 223

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +    VI  ++I G C   R+ EA  +   +R     P+   Y  + + +  +  V +  
Sbjct: 224 IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKAL 283

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + ++    G+ P    +   I GL      C+  E+   + + KF ID           
Sbjct: 284 ELYQEMLGDGLLPNVVTFGILIDGL------CKTDEM---VSARKFLID----------- 323

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                         M   G VP +   + L    CK     E + ++  +  ++   D+ 
Sbjct: 324 --------------MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVF 369

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y++++  LC   R+ EA G++QEMK+KG  P+   YN+L++  C+E  +  A ++  QM
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N+ T++ LI  + + G++E A+ L+  M+ KG+ PD   YT+L++G  ++ N 
Sbjct: 430 TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNT 489

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + AF +  +     +      LS  +  LC+ G    A KL 
Sbjct: 490 KEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 2/241 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ +G  P + T   L    C++    +   ++  +     F  +  Y +++  LC   R
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  + + M+  G+ P++  YN++M+  C+   ++ A +L+ +M   G   N+ T+ I
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI    +  E+  A +   +M   GV P+   Y  L++G C+  NL  A  + ++   H+
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAI 593
           ++      S  +  LC       A  LL+ +     L ++ ++  L+        +E AI
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 594 E 594
           E
Sbjct: 424 E 424



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P +   + +   L K+ + D + +VY  + A     ++ +Y  ++   C  G   +A+ 
Sbjct: 155 LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  EM  K + P V  Y  L+   C E  +  A+ ++  M  SG   NL TYN ++  + 
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           ++  ++ AL L+  ML  G+ P+  T+  L++GLC+   + +A +      +  V+    
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
           + +  +   C+ G+   A  L   +     L    ++ IL+K L     +E A
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 142/596 (23%), Positives = 261/596 (43%), Gaps = 64/596 (10%)

Query: 27  ARKWTP------LLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLA-----LGFFN 72
           A KWTP       L  +L + G  ++   +   + A+   P L T+++L       G F+
Sbjct: 37  AAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFD 96

Query: 73  WA----SQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
            A    ++  +    P   +Y+ ++ +L  + +++   ++  +++      D+  Y  +I
Sbjct: 97  EALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI 156

Query: 127 PSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
             L +   +QKA  +  E+ +  C    P++   +SL+  L  DG    A K+F EM  R
Sbjct: 157 YGLGKVGRSQKAMELLEEMERHGCP---PDVMTYSSLITGLGKDGETVKAFKLFQEMKRR 213

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G +  +I F   +    +  ++   L +LDE+++R   +  G V    +I GF K   + 
Sbjct: 214 GRKPDSITFTALMDALGKAGRVDDALELLDEMKER--GVKPGVVTYNALIAGFGKVGDLV 271

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA+ +LDE++   CKPD + Y  +         + E   VLKK  K G  P T  Y   I
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            GL                  GK  + +D                A   F+ M  KG  P
Sbjct: 332 NGL------------------GKAGLLND----------------AGRLFDRMKSKGCNP 357

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T S L   L K  + +    +++ + +     D+ +Y  +++ L  +G++ +A  + 
Sbjct: 358 DVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLF 417

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EM+ KGL PDV  YN+ + +  R    + A+K+++ M  SG   ++ TY+ L+   S+ 
Sbjct: 418 SEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKT 477

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            E++ A  L   ++E+G A D+  +   LE L    N+  A E+   + +  +    S  
Sbjct: 478 KEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSY 537

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           +  + +L + G    A   L  L    G  D  S+  L+ +L    +++ A E ++
Sbjct: 538 NALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLE 593



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/531 (23%), Positives = 231/531 (43%), Gaps = 58/531 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S+L +L+ + Q      + +++K  K T D   Y  +I SL +    + A  V  E
Sbjct: 10  VTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAE 69

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++           N+L+  L   G  D AL++  EM   G       +   I    +  +
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR 129

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +  ++  E+R+R    +  +     +I+G  K  R ++A ++L+E+    C PD + Y
Sbjct: 130 LSEAFTLFAEMRER--GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTY 187

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +       G   +   + ++ ++ G  P +  +   +  L    R+ +A EL      
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL------ 241

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                                        + M E+G  P + T + L        K  +L
Sbjct: 242 ----------------------------LDEMKERGVKPGVVTYNALIAGF---GKVGDL 270

Query: 385 VEVYKVLSA---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           VE Y +L     N    D+ +Y+ +++ L  + +L EA  V+++M+++G  PD   YN+L
Sbjct: 271 VEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +    +  LL  A +L+D+M + GC+ ++ TY+ LI+   +   +E A  LF  M   G+
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI 390

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFL 557
            PD  TY S++  L +   +  A  +F+    K ++ DV+      + F+ SL R G F 
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVI----TYNAFLNSLGRGGRFK 446

Query: 558 VATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
            A K+       GL  D+   D+   LL  L+  +EV+ A   +K + E  
Sbjct: 447 EARKIFEDMKESGLLPDVATYDA---LLLGLSKTKEVDDACGLLKELIEQG 494



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 200/468 (42%), Gaps = 40/468 (8%)

Query: 85  LSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            +Y+S++  L  + R   A++ +L++++ +    D   Y  +I  L +   T KAF +F 
Sbjct: 150 FTYNSLIYGLGKVGRSQKAME-LLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQ 208

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           E+K            +L+  L   G +D+AL++ DEM  RGV+   + +   I  F +  
Sbjct: 209 EMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVG 268

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            L +  ++LDE+++  N      V    +I G  K  +++EA +VL ++    C PD I 
Sbjct: 269 DLVEAYNLLDEMKR--NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE--- 320
           Y  +       G + +   +  + +  G  P    Y   I  L    R+  A  L E   
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 321 --------------VIVSGKF-TIDD---------------DVL--NALIGSVSSIDP-R 347
                         + V GK   +DD               DV+  NA + S+      +
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F  M E G +P ++T   L   L K  + D+   + K L       D   ++  +
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             L + G + EA+ ++Q    KGL P  S YN+L++A  +   +  A    + +   G  
Sbjct: 507 EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++ +Y+ LIS   + G+I+ A  L   M ++G+     +Y++L+  L
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T ++L   L K  + +E   +++ L A  +  D+ SY+ +++ L  +G+   A  V
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG  P++  YN+L++   +      A +L  +M  +GC  +++TYN LIS   +
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G +  A  LF  M E+G  PD  TY SL+ GL +    Q A E+  +   H        
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMAIEHIKWIQ 600
            S+ +  L + G  + A KL + +       DS     L+ +L  A  V+ A+E +  ++
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246

Query: 601 E 601
           E
Sbjct: 247 E 247


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/566 (22%), Positives = 235/566 (41%), Gaps = 49/566 (8%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNW-ASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           LR  +S   V ++     L    LA   F   +S +  F HS  + +++L   + +++  
Sbjct: 19  LRREISTDAVVKIFQ--CLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHR 76

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
              ++LK         D   +  +I      +  ++AF+V  E++   ED G        
Sbjct: 77  EAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREME---EDYG-------- 125

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
                   +  +LK  + + H                 C   K G+VL+ +D     E +
Sbjct: 126 --------VAPSLKTHNLVLH---------------GLC---KSGKVLAAMDHF---ETT 156

Query: 222 MINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             NG  I +     I+    K K++++A  +++++    C P    Y  +      MG +
Sbjct: 157 TTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRL 216

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L+K    G  P    Y   I GL  E+R  EA +L + +      +D     AL
Sbjct: 217 EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTAL 276

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G + +     A   +  M  +G VP + TLS +   LCK  +    V ++K + A   
Sbjct: 277 IRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGL 336

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +   Y+ ++  LC + ++  A  ++ +MK+    PD   YN L++  C+   +  A+ 
Sbjct: 337 APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 396

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            +D+M  +GC  ++ TYNIL+S F + G  + A  +F +M     +P+  TY +L+ GLC
Sbjct: 397 FFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLC 456

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGHSDS 575
           +   L  A   F             + S+ +  LC+ G       L   +  S + +S +
Sbjct: 457 KRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQT 516

Query: 576 HVILLKSLADAREVEMAIEHIKWIQE 601
              L+  L  A  V+ A+     I++
Sbjct: 517 RTRLIFHLCKANRVDEAVSLFNAIRK 542



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK-GRVPTLSTLSNL 371
           EA  L +  ++  F  D +  N LI G   + +P  A      M E  G  P+L T + +
Sbjct: 77  EAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLV 136

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK  K    ++ ++  + N    D+ +Y  +V +L  + ++++A  +++++   G 
Sbjct: 137 LHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGC 196

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P ++ YN+L+   C+   L  A  L  ++  +GC+ ++ TY  LI    +      A +
Sbjct: 197 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 256

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           LF  M  +G+  D   YT+L+ GL Q   +  A  V+    +   +     LST +  LC
Sbjct: 257 LFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 316

Query: 552 RRGHFLVATKLLRGLSSDLGHSDSHVI---LLKSLADAREVEMAIEHIKWIQES 602
           + G    A ++ + + +  G + + V+   L+  L  AR+++ A+E +  ++++
Sbjct: 317 KAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 369



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 9/339 (2%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y S++  L   ++      + K++ +  + LD+  Y  +I  L+Q     +A S
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASS 291

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           V+  +    +   P++   ++++  L   G I  A+++F  M  RG+  + + +   I  
Sbjct: 292 VYKTM--TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 349

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+  K+   L ML +++K   +    ++   ++I G CK   VE A    DE+    CK
Sbjct: 350 LCKARKMDCALEMLAQMKKAFCT--PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+   F   G+      V         +P    Y   I GL   R++ +A   
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLY 467

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +       D  V ++L+ G   S       + F+ M E+  V    T + L  +LCK
Sbjct: 468 FQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCK 526

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            N+ DE V ++  +   +      +YN ++S L  S ++
Sbjct: 527 ANRVDEAVSLFNAIR-KEGMPHPYAYNSIISTLIKSAKV 564



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           R G    V   N+L++   R    R A  L     A+    +++T+N+LI+ +    E E
Sbjct: 52  RFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPE 111

Query: 488 GALRLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
            A  +   M E  GVAP   T+  +L GLC+   + AA + F  +  +   +     +  
Sbjct: 112 EAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAI 171

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQESS 603
           +  L +      A  L+  ++++ G +    ++  LL  L     +E AI+ ++ I ++ 
Sbjct: 172 VDWLAKNKKIQDAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 230

Query: 604 PT 605
            T
Sbjct: 231 CT 232


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/550 (24%), Positives = 231/550 (42%), Gaps = 39/550 (7%)

Query: 18  ISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH---HS----LALGF 70
           +S   RTRP  +W    EQTL    L D   PS     ++P  L+H   H     ++L F
Sbjct: 101 VSDITRTRP--RW----EQTL----LSDF--PSF--NFLDPTFLSHFVEHQKNALISLRF 146

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F+W S Q  F+    S + +  +L  +   NA  S L     N        Y   I  L 
Sbjct: 147 FHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKPASLEAY---IRCLC 203

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC------NSLLAVLASDGYIDNALKMFDEMSHRG 184
           +G   ++A SVF ++K      G  +C      NS+L      G ID   +++ EM    
Sbjct: 204 KGGLVEEAISVFGQLK------GIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESS 257

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V       G  +  FC+  ++    ++L  V   E+ ++  +     +I GFCK K    
Sbjct: 258 VVADVHTVGYLVQAFCDENRISDGHNLLRRVL--EDGVVPRNAAFNKLISGFCKDKAYGR 315

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
              +L  +  R   PD   Y+ V       G   E   V K  +  G AP    Y   I 
Sbjct: 316 VSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIH 375

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVP 363
           GL   + + +A++L   ++   F  ++   NA+I     I +   A   +  M +KG   
Sbjct: 376 GLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGE 435

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              + + + K LC   K  E  ++++ +S      +  +YN +V   C  G++ E   ++
Sbjct: 436 KTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLL 495

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            E+  +G+ P  + Y  L++  C+E  ++ AK LWD M   G    + T++ +I+ F + 
Sbjct: 496 YELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQ 555

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G     +     ML   + P   ++ SL++ L Q   L  A  V +  +     L+ SI 
Sbjct: 556 GCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISIC 615

Query: 544 STFMISLCRR 553
           ++ +  LC +
Sbjct: 616 NSLVTKLCEK 625



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 100/208 (48%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           ++E G VP  +  + L    CK      + ++   + A +   D+ +Y  +V+ LC  G+
Sbjct: 288 VLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGK 347

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             E + V +++K +G  PD   Y +++   CR   L  A+KLW +M   G   N  TYN 
Sbjct: 348 GPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNA 407

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I  + ++G +E A +++  M +KG      +Y  +++GLC    ++ A ++F +  +  
Sbjct: 408 MIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKG 467

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
           ++      +  +   C+ G  +    LL
Sbjct: 468 ILRNHITYNALVRGFCKEGKIVEGANLL 495


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 179/366 (48%), Gaps = 15/366 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L S G    AL++  +M       + + +   I  FC   ++   L ++ E+R+
Sbjct: 45  NIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRE 100

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIV----AEEFK 272
           R     N       +I G+CK  RV+EA KV DE+  + E KP+ + Y  +     ++ K
Sbjct: 101 RGGIAPNQYTYGT-VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 159

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L  ++  R+ ++++    GVA     Y   +  L ++ R  EA EL E +       D  
Sbjct: 160 LDTALLYRDRMVER----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 215

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G     + + A+  F  M  +G   T+ T ++L   L K+ +  E  +++   
Sbjct: 216 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 275

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YN +++   TSG +  A+ ++ EM++K + PD   YN+LM   C    +
Sbjct: 276 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 335

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+KL D+M   G   +L TYN LIS +S  G+++ ALR+ + M+ KG  P   TY +L
Sbjct: 336 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 395

Query: 512 LEGLCQ 517
           ++GLC+
Sbjct: 396 IQGLCK 401



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 165/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F +M    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQM-PRPNAVTYNTVIA--- 80

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A  ++ E+R R                                   G+
Sbjct: 81  --GFCSRGRVQAALDIMREMRERG----------------------------------GI 104

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           AP    Y   I G     R+ EA K   E++  G+   +  + NALIG       +D  +
Sbjct: 105 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--T 162

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+++ + M+E+G   T++T                                   YN++V 
Sbjct: 163 ALLYRDRMVERGVAMTVAT-----------------------------------YNLLVH 187

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   GR  EAY +++EM  KGL PDV  YN L+   C+E  ++ A ++++ M   G   
Sbjct: 188 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 247

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TY  LI   S+ G+++   +LF   + +G+ PD   Y +L+       N+  AFE+ 
Sbjct: 248 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 307

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M  LC  G    A KL+     RG+  DL
Sbjct: 308 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDL 354



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 46/297 (15%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L  DG    A ++ +EM  +G+      + + I   C+   + + L + + + +
Sbjct: 183 NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR 242

Query: 218 RENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    +  +V+    +I+   K  +V+E  K+ DE   R  +PD + Y  +       G+
Sbjct: 243 RG---VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 299

Query: 277 V---FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +   FE    ++KKR   +AP    Y   + GL +  R+ EA++L + +       D   
Sbjct: 300 IDRAFEIMGEMEKKR---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVT 356

Query: 334 LNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI   S   D + A+   N M+ KG  PTL T                         
Sbjct: 357 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT------------------------- 391

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
                     YN ++  LC +G+  +A  +++EM   G+ PD S Y SL+E    ED
Sbjct: 392 ----------YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 438



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 111/263 (42%), Gaps = 2/263 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++ +L +  +      +++++    +  D   Y  +I    +  N +KA  +F  +
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 240

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                        SL+  L+  G +    K+FDE   RG+    + +   I     +  +
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 300

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+ K+   +    V    ++ G C   RV+EA K++DE+  R  +PD + Y 
Sbjct: 301 DRAFEIMGEMEKKR--IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 358

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   + + G V +   +  +    G  P    Y   I GL    +  +A+ + + +V  
Sbjct: 359 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418

Query: 326 KFTIDDDVLNALIGSVSSIDPRS 348
             T DD    +LI  +++ D R+
Sbjct: 419 GITPDDSTYISLIEGLTTEDERA 441


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 184/403 (45%), Gaps = 11/403 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +      A  V + ++   +D  P+    N ++  L S G +D ALK
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMR--SKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D++     + + I + + I        + + L +LDE+  R   +         II G
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSR--GLKPDMFTYNTIIRG 268

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK   V+ AF+++  L ++ C+PD I+Y I+       G   E E ++ K       P 
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVF 352
              Y   I  L  + +I EA  L +++     T D    + LI +      +D   AI F
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLD--VAIEF 386

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
              MI  G +P +   + +   LCK  K+D+ +E++  L       +  SYN M S L +
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           SG    A  +I EM   G+DPD   YNS++   CRE ++  A +L   M +     ++ T
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVT 506

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           YNI++  F +   IE A+ +  +M+  G  P+ TTYT L+EG+
Sbjct: 507 YNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 2/324 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I H  C+     E+  +L+ +  +   PD I    + + F  + +V +   V++   K G
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
             P    Y   I G     RI +A  + + + S  F+ D    N +IGS+ S      A+
Sbjct: 151 -QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 209

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + ++     PT+ T + L +        DE +++   + +     DM +YN ++  +
Sbjct: 210 KVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGM 269

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G +  A+ +I+ ++ KG +PDV  YN L+ A   +      +KL  +MF+  C  N+
Sbjct: 270 CKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNV 329

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ILI+     G+IE A+ L   M EKG+ PDA +Y  L+   C+E  L  A E    
Sbjct: 330 VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET 389

Query: 531 SVNHDVMLARSILSTFMISLCRRG 554
            ++   +      +T + +LC+ G
Sbjct: 390 MISDGCLPDIVNYNTVLATLCKNG 413



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 179/371 (48%), Gaps = 13/371 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I+GFCK  R+++A +VLD +R ++  PD + Y I+       G +     VL +     
Sbjct: 160 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN 219

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SSIDPRSA 349
             P    Y   I   ++E  + EA +L + ++S     D    N +I  +    +  R+ 
Sbjct: 220 CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 279

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
            +  N  + KG  P + + + L + L  + K +E  ++   + +     ++ +Y+++++ 
Sbjct: 280 EMIRNLEL-KGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITT 338

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G++ EA  +++ MK KGL PD   Y+ L+ A CRE  L  A +  + M + GC  +
Sbjct: 339 LCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 398

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN----LQAAF 525
           +  YN +++   + G+ + AL +F  + E G +P++++Y ++   L    +    L    
Sbjct: 399 IVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMIL 458

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSL 583
           E+ +  ++ D +   S++S     LCR G    A +LL  + S   H    ++ I+L   
Sbjct: 459 EMVSNGIDPDEITYNSMIS----CLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF 514

Query: 584 ADAREVEMAIE 594
             A  +E AI+
Sbjct: 515 CKAHRIEDAID 525



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + E+  K   PDV  YN+L+   C+ + +  A ++ D+M +   S +  TYNI+I     
Sbjct: 142 VMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 201

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G+++ AL++   +L     P   TYT L+E    E  +  A ++ ++ ++  +      
Sbjct: 202 RGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFT 261

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            +T +  +C+ G    A +++R L       D  S+ ILL++L +  + E
Sbjct: 262 YNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWE 311



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/361 (17%), Positives = 149/361 (41%), Gaps = 17/361 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++++  L   ++    +L ++    +  D   Y  II  + +     +AF +   
Sbjct: 225 ITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRN 284

Query: 145 VKF-NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           ++   CE   P++   N LL  L + G  +   K+  +M     + + + + + I   C 
Sbjct: 285 LELKGCE---PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 341

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + K+ + +++L  ++  E  +   +     +I  FC+  R++ A + L+ +    C PD 
Sbjct: 342 DGKIEEAMNLLKLMK--EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 399

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  V       G   +   +  K  ++G +P ++ Y      L        A  +   
Sbjct: 400 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 459

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIV--FFNFMIEKGRV---PTLSTLSNLSKNLC 376
           +VS     D+   N++I  +     R  +V   F  +++       P++ T + +    C
Sbjct: 460 MVSNGIDPDEITYNSMISCLC----REGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFC 515

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K ++ ++ ++V   +  N    +  +Y V++  +  +G   EA  +  ++ R     + S
Sbjct: 516 KAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYS 575

Query: 437 F 437
           F
Sbjct: 576 F 576


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 152/581 (26%), Positives = 240/581 (41%), Gaps = 46/581 (7%)

Query: 14  SQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNW 73
           SQ I +  N  R    W            +   L P  V +V+    L    LAL FFN+
Sbjct: 40  SQFIATLRNIVRGKESWKIAFNDPF----ISTKLKPHHVEKVLL-LTLDDTRLALRFFNF 94

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV---------KVNKITLD------ 118
                NF HS +S+  ++ +L  +       S+L+ +         +V +  LD      
Sbjct: 95  LGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCD 154

Query: 119 ---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNA 173
              S  +  +I S +Q K    +  +F  ++  CE + P++     +L  LA    +D  
Sbjct: 155 FISSLGFDLLIQSYVQEKRMFDSVLIFRLMR-QCE-LMPQVRTLGEVLNGLAKIRRVDMV 212

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           L +F E+   G+      +   I  FCE     +   M   +++ E+S +N  V  VLI 
Sbjct: 213 LVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEM---IQRMESSDLNVVVYNVLI- 268

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA------EEFKLMGSVFEREVVLKKK 287
           HG CK KRV EA ++ + L  +      + Y  +       +EF++   V +  +     
Sbjct: 269 HGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI----- 323

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            +LG  P        + GL  + ++ +A +L   +          V NALI S+   D +
Sbjct: 324 -ELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCK-DGK 381

Query: 348 --SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A + F  M EKG      T S L  + C+R K D  +     +        +  YN 
Sbjct: 382 FDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNS 441

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++  C  G L  A     EM  KGL P V  Y SL+   C +  L  A +L+ +M   G
Sbjct: 442 LINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKG 501

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            + N  T+  LIS       +  A RLF  MLE+ + P+  TY  ++EG C+E N   AF
Sbjct: 502 IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAF 561

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           E+ N+ V   ++         + SLC  G    A K +  L
Sbjct: 562 ELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 222/532 (41%), Gaps = 57/532 (10%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q   T S ++Y +++  L   ++      V+ ++    I L        + SL++G   +
Sbjct: 289 QKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEM----IELGFVPTEAALSSLVEGLRRK 344

Query: 137 ----KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                AF + N VK         + N+L+  L  DG  D A  +F EM  +G+  + + +
Sbjct: 345 GKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTY 404

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKV 248
            + I  FC   KL   +  L ++      ++ G  I V     +I+G CK   +  A   
Sbjct: 405 SILIDSFCRRGKLDTAIHFLGKM------IMAGIKITVYPYNSLINGHCKLGNLSAAVSF 458

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            DE+  +  KP  ++Y  +   +   G + E   +  +    G+AP T  +   I  L  
Sbjct: 459 FDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFR 518

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
             R+ +A  L + ++      ++   N +I G     +   A    N M++KG VP   T
Sbjct: 519 ANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYT 578

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              L  +LC   +  E  +    L    +  +   Y+ ++   C  GRLR+A GV +EM 
Sbjct: 579 YRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMV 638

Query: 428 RKGLDPDVSFYNSLMEACCRED---------------LLRPAK----------------- 455
           ++G+D D+  Y  L++   +E                 LRP K                 
Sbjct: 639 KRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVK 698

Query: 456 ---KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
               +WD M   GC+ N+ TY  LI++  + G ++ A  L+  ML     P+  TY   L
Sbjct: 699 KAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFL 758

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLL 563
           + L +E +++ A ++ N  +    +LA ++    ++   C+ G    ATKLL
Sbjct: 759 DHLAREGSMEKAVQLHNDMLKG--LLANTVSYNILVRGFCKLGRVEEATKLL 808



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 215/489 (43%), Gaps = 9/489 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++ SL    + +  + + K++    +  +   Y  +I S  +      A     ++ 
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                I     NSL+      G +  A+  FDEM  +G++ + + +   I  +C   KL 
Sbjct: 429 MAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLH 488

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +  E+  +   +   +     +I    +  R+ +AF++ DE+  +   P+ + Y +
Sbjct: 489 EAFRLYHEMTGK--GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNV 546

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + E     G+  +   +L +  + G+ P T  YR  I  L    R+CEAK+  + +    
Sbjct: 547 MIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH 606

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F +++   +AL+ G       R A+     M+++G    L   + L     K   +  + 
Sbjct: 607 FKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVF 666

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            + K +       D   Y  M+     +G +++A+G+   M  +G  P++  Y +L+   
Sbjct: 667 GLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+  L+  A+ LW +M  S  + N  TY   +   +  G +E A++L ++ML KG+  + 
Sbjct: 727 CKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANT 785

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA-----T 560
            +Y  L+ G C+   ++ A ++ ++ +++ +       ST +   CRRG+   A     T
Sbjct: 786 VSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDT 845

Query: 561 KLLRGLSSD 569
            L +GL  D
Sbjct: 846 MLNKGLKPD 854



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/456 (20%), Positives = 190/456 (41%), Gaps = 15/456 (3%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S A+ FF+    +     + +SY S++       +++    +  ++    I  ++  +  
Sbjct: 453 SAAVSFFDEMIDK-GLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +I +L +      AF +F+E+            N ++     +G    A ++ ++M  +G
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKG 571

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           +   T  +   I   C   ++ +    +D++  RE+  +N    + L+ HG+CK  R+ +
Sbjct: 572 LVPDTYTYRPLISSLCSTGRVCEAKKFIDDLH-REHFKLNEMCYSALL-HGYCKEGRLRD 629

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV-----VLKKKRKLGVAPRTNDY 299
           A  V  E+  R    D + Y ++ +     G++ E++      +LK      + P    Y
Sbjct: 630 ALGVCREMVKRGVDMDLVCYAVLID-----GTIKEQDTSAVFGLLKNMHDQRLRPDKVIY 684

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIE 358
              I G      + +A  + ++++    T +      LI  +        A + +  M+ 
Sbjct: 685 TSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLV 744

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
               P   T      +L +    ++ V+++  +       +  SYN++V   C  GR+ E
Sbjct: 745 SNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEE 803

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++ EM    + PD   Y++++  CCR   L  A + WD M   G   +   YN LI 
Sbjct: 804 ATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIY 863

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
                GE+  A  L  +M+ +GV P+  T+ SL  G
Sbjct: 864 GCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHG 899



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 180/418 (43%), Gaps = 8/418 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y  +I          +AF +++E+    + I P      +L++ L     + +A ++FDE
Sbjct: 474 YTSLISGYCNKGKLHEAFRLYHEM--TGKGIAPNTYTFTTLISALFRANRMTDAFRLFDE 531

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  + +  + + + V I   C+     +   +L+++ ++   ++  +     +I   C  
Sbjct: 532 MLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK--GLVPDTYTYRPLISSLCST 589

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            RV EA K +D+L     K + + Y  +   +   G + +   V ++  K GV      Y
Sbjct: 590 GRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              I G I E+       L + +   +   D  +  ++I   S     + A   ++ MI+
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMID 709

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P + T + L   LCK    D+   ++K +  ++   +  +Y   +  L   G + +
Sbjct: 710 EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEK 769

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +  +M  KGL  +   YN L+   C+   +  A KL D+M  +    +  TY+ +I 
Sbjct: 770 AVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIY 828

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +    G ++GA+  +  ML KG+ PD   Y  L+ G C    L  AFE+ +  +   V
Sbjct: 829 QCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGV 886


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 216/448 (48%), Gaps = 20/448 (4%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
           F++ SL++    +K++ VF  ++   + + P++   ++ +      G +++A+++F +M 
Sbjct: 217 FLLSSLVKANELEKSYWVFETMR---QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME 273

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGF 236
             GV  + + +   I   C++  L       DE  + +  M+   V A LI     I+G 
Sbjct: 274 KLGVSPNVVTYNNLIHGLCKHGNL-------DEAFRFKEKMVKDGVNATLITYSVLINGL 326

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K ++  EA  VL E   +   P+ + Y  + + +  MG++ +   +       G+ P +
Sbjct: 327 MKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNS 386

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFN 354
                 I G     ++ +A+ + E ++S  F+I+      +I  +  ++ R  SA+ F  
Sbjct: 387 VTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC-MNSRFESALRFLR 445

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +   P    L+ L   LCK  K  + VE++  L    +  ++ + N ++  LC +G
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 505

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  ++++M  +G   D   YN+L+  CC+E  +    KL  +M   G   +  TYN
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 565

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +LI     +G+++ A+ L++    + + P+  TY  +++G C+   ++   ++F + +  
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKL 562
           ++ L   + +T + + CR G+ + A KL
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKL 653



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 193/436 (44%), Gaps = 17/436 (3%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYI 170
           ++ D  ++   I +  +G   + A  +F    F+ E +G  P +   N+L+  L   G +
Sbjct: 242 VSPDVYLFSTAINAFCKGGKVEDAIQLF----FDMEKLGVSPNVVTYNNLIHGLCKHGNL 297

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A +  ++M   GV  + I + V I    +  K  +  S+L E    E       V+  
Sbjct: 298 DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETL--EKGFTPNEVVYN 355

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I G+CK   + +A ++  ++  +   P+ +    + + F  +G + + E +L++    
Sbjct: 356 TLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 415

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G +     +   I  L +  R   A      ++      +D +L  L+G +      S  
Sbjct: 416 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 475

Query: 351 VFFNF-MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           V   F ++EKG    L T + L   LCK     E V + K +    +  D  +YN ++S 
Sbjct: 476 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISG 535

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G++ E + +  EM ++G++PD   YN L+   CR   L  A  LW++  +     N
Sbjct: 536 CCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 595

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY ++I  + +  +IE   +LF  +L + +  ++  Y +L+   C+  N   AF++  
Sbjct: 596 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL-- 653

Query: 530 KSVNHDVMLARSILST 545
               HD M ++ I  T
Sbjct: 654 ----HDDMRSKGIPPT 665



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 187/446 (41%), Gaps = 5/446 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I  L++ +   +A SV  E           + N+L+      G + +AL++  +M
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +G+  +++     I  FC+  ++ Q   +L+E+  R  S+  G+     IIH  C   
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT--IIHWLCMNS 435

Query: 241 RVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           R E A + L E+ +R  +P D +   +V    K        E+  +   K G        
Sbjct: 436 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK-GFGANLVTT 494

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL     + EA  L + ++   F +D    N LI G                M++
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P   T + L   +C+  K DE V ++    + D   ++ +Y VM+   C + ++ E
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
              +  E+  + L+ +   YN+L+ A CR      A KL D M + G      TY+ LI 
Sbjct: 615 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 674

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
               +G +E A  L   M ++G+ P+   YT+L+ G C+   +     V  +  ++D+  
Sbjct: 675 GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP 734

Query: 539 ARSILSTFMISLCRRGHFLVATKLLR 564
            +   +  +    + G    A KLL 
Sbjct: 735 NKITYTVMIDGYSKSGDMKTAAKLLH 760



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/480 (22%), Positives = 194/480 (40%), Gaps = 40/480 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++  L    + N  +SVLK+      T +  VY  +I    +  N   A  +  +
Sbjct: 317 ITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD 376

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +      NS++      G ++ A  + +EM  RG   +   F   I   C N++
Sbjct: 377 MVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 436

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
               L  L E+  R N   N  ++  L+  G CK  +  +A ++   L  +    + +  
Sbjct: 437 FESALRFLREMLLR-NMRPNDGLLTTLV-GGLCKEGKHSDAVELWFRLLEKGFGANLVTT 494

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIV 323
             +       G++ E   +LKK  + G       Y   I G   E ++ E  +L GE++ 
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            G    D    N LI  +  I     A+  +N    +  VP + T   +    CK +K +
Sbjct: 555 QG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIE 613

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  +++  L   +   +   YN ++   C +G   EA+ +  +M+ KG+ P  + Y+SL+
Sbjct: 614 EGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 673

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLK------------------------------- 471
              C    +  AK L D+M   G   N+                                
Sbjct: 674 HGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIH 733

Query: 472 ----TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
               TY ++I  +S+ G+++ A +L H M+ KG+ PD  TY  L  G C+E  ++  F++
Sbjct: 734 PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKI 793



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/438 (19%), Positives = 189/438 (43%), Gaps = 3/438 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++ +SI++      Q+   + +L+++     +++   +  II  L      + A     E
Sbjct: 387 VTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLRE 446

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          +  +L+  L  +G   +A++++  +  +G   + +     I   C+   
Sbjct: 447 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGN 506

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + + +L ++ +R    +   +    +I G CK  +VEE FK+  E+  +  +PD   Y
Sbjct: 507 MQEAVRLLKKMLER--GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 564

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++      +G + E   +  + +   + P    Y   I G     +I E ++L   +++
Sbjct: 565 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT 624

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               ++  V N LI     + +   A    + M  KG  PT +T S+L   +C   + ++
Sbjct: 625 QNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMED 684

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              +   +       ++  Y  ++   C  G++ +   V+QEM    + P+   Y  +++
Sbjct: 685 AKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMID 744

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   ++ A KL  +M   G   +  TYN+L + F + G+IE   ++   M ++G+  
Sbjct: 745 GYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPL 804

Query: 504 DATTYTSLLEGLCQETNL 521
           D  TYT+L+ G  Q + L
Sbjct: 805 DEITYTTLVHGWQQPSAL 822



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+AI  F F+  KG  PT+ T + L  +L K N+ ++   V++ +       D+  ++  
Sbjct: 194 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQG-VSPDVYLFSTA 252

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C  G++ +A  +  +M++ G+ P+V  YN+L+   C+   L  A +  ++M   G 
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +  L TY++LI+   ++ +   A  +    LEKG  P+   Y +L++G C+  NL  A  
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
           +    V+  +      L++ +   C+ G    A  +L     RG S + G
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 422


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 201/440 (45%), Gaps = 23/440 (5%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  +   G +D A+ +  +++  G E   + +   +   C   + G V  ++DE+ 
Sbjct: 184 CNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM- 242

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            R +   N      LI +  C+    E   +VL ++    C PD   Y  + +     G 
Sbjct: 243 VRVDCAPNIVTFNTLIGY-LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L +    G+ P    Y   + GL    R  EA+EL   +      +DD   N 
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 337 LI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           L+      G V  +     I     M+  G +P + T + +    CK    DE V + K 
Sbjct: 362 LVDFFCQNGLVDRV-----IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S+     +  SY +++  LC++GR  +A  ++ +M ++G  P+   +N+L+   C++ L
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L  QM  +GCS +L +Y+ +I    + G+ E AL L + M+ KG++P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 511 LLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +   L +E  +    ++F+     ++  D +L  +++S    SLC+R     A      +
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS----SLCKRWETDRAIDFFAYM 592

Query: 567 SSD--LGHSDSHVILLKSLA 584
            S+  + +  ++ +L+K LA
Sbjct: 593 VSNGCMPNESTYTMLIKGLA 612



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 209/473 (44%), Gaps = 45/473 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+++LK L ++++   ++ ++ ++    + +D +       +LI        F   +E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEM----VRVDCAPNIVTFNTLIGYLCRNGLFERVHE 272

Query: 145 VKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V     + G  P+I    +++  +  +G+++ A ++ + M   G++ + + +   +   C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  +   +L E+ +++  +    V   +++  FC+   V+   ++L+++    C PD
Sbjct: 333 SAERWKEAEELLSEMFQKDCPL--DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R  +A+EL  
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL-- 448

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                                            + MI++G  P   T + L   LCK+  
Sbjct: 449 --------------------------------MSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +  A  RE  +    +++D +  +    +   YN +IS   +  E + A+  F  M+  G
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG 596

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             P+ +TYT L++GL  E   + A E+ ++  +    L + ++  F IS C +
Sbjct: 597 CMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGA-LRKHLMRHFGISNCTQ 648



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 21/313 (6%)

Query: 292 VAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           V P    +   + GL    RI +A E L E+   G   I       L  +  S   R+++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  KG        + +   +C++   DE V + + L+      D+ SYN ++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   ++ EM R    P++  +N+L+   CR  L     ++  QM   GC+ ++
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + Y  +I    + G +E A  + + M   G+ P+   Y ++L+GLC     + A E+ ++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 531 SVNHDVMLARSILSTFMISLCRRG-------------------HFLVATKLLRGLSSDLG 571
               D  L     +  +   C+ G                     +  T ++ G   + G
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE-G 405

Query: 572 HSDSHVILLKSLA 584
             D  V+LLKS++
Sbjct: 406 LIDEAVMLLKSMS 418


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 219/516 (42%), Gaps = 48/516 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+S+L +L  S + +  +S     +   ++ +   Y  +I    + K   KA  + N +
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 146 KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               +   P++    +L+  LA +GY+ +ALK+FDEM  RGV      + + I  F +  
Sbjct: 176 WE--QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 233

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            +     + + + K  +   N     V+I +G CK  + +E+F++   ++  E   D   
Sbjct: 234 DILNASEIWERLLKGPSVYPNIPSYNVMI-NGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +       G++     V K+  + GV+P    Y   + G +   RI E  EL +V+ 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM- 351

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                                             EK    T+ + + L + L +  K DE
Sbjct: 352 ----------------------------------EKEGCRTVVSYNILIRGLFENAKVDE 377

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + ++++L   D   D  +Y V+V  LC +G L +A  +++E +    D D   Y+S++ 
Sbjct: 378 AISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMIN 437

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CRE  L     + DQM   GC  N    N +I+ F    ++E ALR F NM+ KG  P
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              TY +L+ GL +      A+ +  + ++          S  M  LC+     +A  L 
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 564 -----RGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
                +G   D+     H I++  L  + +VE A++
Sbjct: 558 CQALEKGFKPDV---KMHNIIIHGLCSSGKVEDALQ 590



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 187/417 (44%), Gaps = 4/417 (0%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +     ++F +++ +K N         ++L+  L   G +D A +++ EM+
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMA 317

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             GV    + +   +  +    ++ + L +   + K     +   V   ++I G  +  +
Sbjct: 318 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV---VSYNILIRGLFENAK 374

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EA  + + L  ++C  D + Y ++       G + +   +L++         T  Y  
Sbjct: 375 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 434

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I GL  E R+ E   + + +       +  V NA+I G V +     A+ FF  M+ KG
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             PT+ T + L   L K  +  E   + K +    +  +M +Y+++++ LC   +L  A 
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMAL 554

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  +   KG  PDV  +N ++   C    +  A +L+ +M    C  NL T+N L+  F
Sbjct: 555 NLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            +V + E A +++ ++L+ G  PD  +Y   L+GLC    +  A    N +V+  V+
Sbjct: 615 YKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVL 671



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 212/481 (44%), Gaps = 28/481 (5%)

Query: 54  RVINPYLLTHHSLALGFFN----------WAS--QQPNFTHSPLSYHSILKSLSLSRQIN 101
           R + P +  ++ L  GFF           W    + P+   +  SY+ ++  L    + +
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NS 159
               +  ++K N+   D   Y  +I  L    N   A  V+ E+  N   + P++   N+
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN--GVSPDVVVYNT 330

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L      G I+  L+++  M   G   + + + + I    ENAK+ + +S+ + + +++
Sbjct: 331 MLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD 389

Query: 220 ---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
              +SM  G     +++HG CK   + +A  +L+E        D  AY  +       G 
Sbjct: 390 CCADSMTYG-----VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGR 444

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLN 335
           + E   VL +  K G  P  +     I G +   ++ +A +  G ++  G F       N
Sbjct: 445 LDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV-TYN 503

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI  +S  +  S A      M+ KG  P + T S L   LC+  K D  + ++      
Sbjct: 504 TLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  D++ +N+++  LC+SG++ +A  +  EMK++   P++  +N+LME   +      A
Sbjct: 564 GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERA 623

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            K+WD +   G   ++ +YNI +        I  A+   ++ +++GV P A T+  L+  
Sbjct: 624 SKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRA 683

Query: 515 L 515
           +
Sbjct: 684 V 684



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 124/259 (47%), Gaps = 8/259 (3%)

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCK 377
           E+I + K    +DV   +I + +    P  A+  F  M E  G  P + + ++L   L +
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            NK DE    +          ++++YN+++   C   +  +A  ++  M  +G  PDV  
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFS 186

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +L+ +  +   +  A KL+D+M   G + ++  YNILI  F + G+I  A  ++  +L
Sbjct: 187 YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLL 246

Query: 498 E-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +   V P+  +Y  ++ GLC+      +FE++++   ++        ST +  LC  G+ 
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL 306

Query: 557 LVATKLLR-----GLSSDL 570
             AT++ +     G+S D+
Sbjct: 307 DGATRVYKEMAENGVSPDV 325


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/481 (21%), Positives = 220/481 (45%), Gaps = 13/481 (2%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE---ICNSL 160
           D+++  V+  K+ ++  V  F++  L++G       S+F+++K +    GP       S+
Sbjct: 161 DALVTYVEAKKVGVELQVCNFLLKGLVEGNQIMYVRSLFDDMKIS----GPSPNIYSYSV 216

Query: 161 LAVLASDGY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           L  + + G    ++ A ++  EM   GV  +   +G +++  C   ++    + L  + +
Sbjct: 217 LMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQ 276

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R     +    AV  IHGFC   +V +A +V D ++     PD  +Y I+ +     G V
Sbjct: 277 RGYPCNSYCFNAV--IHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDV 334

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L +  + G+ P    Y   + GL    R+  A EL + +    F  D  V + +
Sbjct: 335 LTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV 394

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G    +D       +N M+    VP     S+L    C+  +  E +EV++++  +  
Sbjct: 395 LHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGI 454

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +  ++V      G + EA+  + ++++ G+ P++  Y  ++   C+ +       
Sbjct: 455 CPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWG 514

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++  M   G   +   Y+I+I  F +  +++ A RL++ M+++G  P+  TYTSL+ GLC
Sbjct: 515 IFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLC 574

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
            +  L     +F   +   +   R + ++ +   C+R +   A ++ R + ++   +DS 
Sbjct: 575 HDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSF 634

Query: 577 V 577
           V
Sbjct: 635 V 635



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 199/440 (45%), Gaps = 23/440 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q  +  +   +++++       Q++    V   +K      D   Y  ++  L +  +  
Sbjct: 276 QRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVL 335

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
             + +  E+  N   I P + +  SLL  L   G ++ A ++F  +  +G +   I + +
Sbjct: 336 TGYYMLVEMARN--GITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSI 393

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +   C++  L     + +++    ++ +  +     +I+ +C+ ++++EA +V + +  
Sbjct: 394 VLHGCCQHLDLEICYDLWNDMV--HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMIC 451

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ +   I+   F   G + E  + L K R+ GV P    YR  I GL      C+
Sbjct: 452 DGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGL------CK 505

Query: 315 AKELGEVIVSGKFT-------IDDDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             +  +V   G F        + D VL ++I  G V ++D + A   +  M+++G  P +
Sbjct: 506 VNKPNDVW--GIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNI 563

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T ++L   LC  +K  E++ ++K +       D   Y  +++  C    ++ A  + +E
Sbjct: 564 FTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFRE 623

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M+ +GL  D   Y  L+    +   +  A+   ++M   G +  + TY  LI  + ++G+
Sbjct: 624 METEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGD 683

Query: 486 IEGALRLFHNMLEKGVAPDA 505
            + A+ ++++ML+ G+APDA
Sbjct: 684 EKKAMVMYNSMLQAGIAPDA 703



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 207/478 (43%), Gaps = 24/478 (5%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EIC-NSLLA 162
           +L +++V  +  +++ Y   +  L + K  + A+   N ++  C+   P    C N+++ 
Sbjct: 235 LLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAW---NFLQMLCQRGYPCNSYCFNAVIH 291

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
               DG +  A+++FD M   G       + + +   C+   +     ML E+ +  N +
Sbjct: 292 GFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMAR--NGI 349

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV--FER 280
               V    ++HG C+  RVE AF++   L+ +  K D I Y IV     L G     + 
Sbjct: 350 TPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV-----LHGCCQHLDL 404

Query: 281 EVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
           E+       +      P   +Y   I      R++ EA E+ E+++      +      L
Sbjct: 405 EICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTIL 464

Query: 338 IGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           +   S+      A +F + + + G VP L T   +   LCK NK +++  ++  +    Y
Sbjct: 465 VHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGY 524

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D   Y++++     +  L+EA+ +  +M  +G  P++  Y SL+   C +D L     
Sbjct: 525 VPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMT 584

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+  M   G + +   Y  LI+ + +   ++ AL +F  M  +G++ D+  YT L+ G  
Sbjct: 585 LFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFS 644

Query: 517 QETNLQAAF----EVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +   +  A     E+ NK +   V+     I+  F I   ++   +  + L  G++ D
Sbjct: 645 KVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPD 702


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 219/516 (42%), Gaps = 48/516 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+S+L +L  S + +  +S     +   ++ +   Y  +I    + K   KA  + N +
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 146 KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               +   P++    +L+  LA +GY+ +ALK+FDEM  RGV      + + I  F +  
Sbjct: 176 WE--QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 233

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            +     + + + K  +   N     V+I +G CK  + +E+F++   ++  E   D   
Sbjct: 234 DILNASEIWERLLKGPSVYPNIPSYNVMI-NGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +       G++     V K+  + GV+P    Y   + G +   RI E  EL +V+ 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM- 351

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                                             EK    T+ + + L + L +  K DE
Sbjct: 352 ----------------------------------EKEGCRTVVSYNILIRGLFENAKVDE 377

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + ++++L   D   D  +Y V+V  LC +G L +A  +++E +    D D   Y+S++ 
Sbjct: 378 AISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMIN 437

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CRE  L     + DQM   GC  N    N +I+ F    ++E ALR F NM+ KG  P
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              TY +L+ GL +      A+ +  + ++          S  M  LC+     +A  L 
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 564 -----RGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
                +G   D+     H I++  L  + +VE A++
Sbjct: 558 CQALEKGFKPDV---KMHNIIIHGLCSSGKVEDALQ 590



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 190/435 (43%), Gaps = 28/435 (6%)

Query: 54  RVINPYLLTHHSLALGFFN----------WAS--QQPNFTHSPLSYHSILKSLSLSRQIN 101
           R + P +  ++ L  GFF           W    + P+   +  SY+ ++  L    + +
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NS 159
               +  ++K N+   D   Y  +I  L    N   A  V+ E+  N   + P++   N+
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN--GVSPDVVVYNT 330

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L      G I+  L+++  M   G   + + + + I    ENAK+ + +S+ + + +++
Sbjct: 331 MLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD 389

Query: 220 ---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
              +SM  G     +++HG CK   + +A  +L+E        D  AY  +       G 
Sbjct: 390 CCADSMTYG-----VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGR 444

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLN 335
           + E   VL +  K G  P  +     I G +   ++ +A +  G ++  G F       N
Sbjct: 445 LDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV-TYN 503

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI  +S  +  S A      M+ KG  P + T S L   LC+  K D  + ++      
Sbjct: 504 TLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  D++ +N+++  LC+SG++ +A  +  EMK++   P++  +N+LME   +      A
Sbjct: 564 GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERA 623

Query: 455 KKLWDQMFASGCSGN 469
            K+WD +  S  S N
Sbjct: 624 SKIWDHILQSWSSSN 638



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 176/397 (44%), Gaps = 8/397 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +     ++F +++ +K N         ++L+  L   G +D A +++ EM+
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMA 317

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             GV    + +   +  +    ++ + L +   + K     +   V   ++I G  +  +
Sbjct: 318 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV---VSYNILIRGLFENAK 374

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EA  + + L  ++C  D + Y ++       G + +   +L++         T  Y  
Sbjct: 375 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 434

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I GL  E R+ E   + + +       +  V NA+I G V +     A+ FF  M+ KG
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             PT+ T + L   L K  +  E   + K +    +  +M +Y+++++ LC   +L  A 
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMAL 554

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  +   KG  PDV  +N ++   C    +  A +L+ +M    C  NL T+N L+  F
Sbjct: 555 NLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            +V + E A +++ ++L+      +++    +E  CQ
Sbjct: 615 YKVRDFERASKIWDHILQSW----SSSNCYYMEHTCQ 647



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 122/253 (48%), Gaps = 3/253 (1%)

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCK 377
           E+I + K    +DV   +I + +    P  A+  F  M E  G  P + + ++L   L +
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            NK DE    +          ++++YN+++   C   +  +A  ++  M  +G  PDV  
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFS 186

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +L+ +  +   +  A KL+D+M   G + ++  YNILI  F + G+I  A  ++  +L
Sbjct: 187 YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLL 246

Query: 498 E-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +   V P+  +Y  ++ GLC+      +FE++++   ++        ST +  LC  G+ 
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL 306

Query: 557 LVATKLLRGLSSD 569
             AT++ + ++ +
Sbjct: 307 DGATRVYKEMAEN 319


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 179/399 (44%), Gaps = 12/399 (3%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A ++ +EM + G+  +   +G+ I   C+N +  +  ++L+E+   E    N  + A 
Sbjct: 437 DGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAP 495

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LII G  K   +  A + L+ +      PD   Y  + +    +G + E E    + +K 
Sbjct: 496 LII-GHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKR 554

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   I G    R + +A +L + +++     + D    L+ G   S D    
Sbjct: 555 GLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKV 614

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M+  G  P       + +NL +    +    V   +  N    D+  Y+ ++S 
Sbjct: 615 SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 674

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC    + +A G++ EM ++GL+P +  YN+L++  CR   +  A+ ++D + A G   N
Sbjct: 675 LCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPN 734

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF---- 525
             TY  LI    + G+I  A  L+ +ML++G+APDA  Y  L  G     +L+ A     
Sbjct: 735 CVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTE 794

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           E+FN+   H      S+ ST +   C+RG      KLL 
Sbjct: 795 EMFNRGYAH-----VSLFSTLVRGFCKRGRLQETEKLLH 828



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 210/490 (42%), Gaps = 5/490 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL  L     ++   K+   M   G+      +  F+   C+         + +E+R
Sbjct: 213 CNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMR 272

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           +R+ +M    V   ++I G C+   VEEAF   +E+      PD   Y  +       G 
Sbjct: 273 RRDCAM--NEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGR 330

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E + +L +    G+ P    Y   + G + E +  EA ++   ++S     +  + + 
Sbjct: 331 LKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDN 390

Query: 337 LIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI  +  I     A    N MI+ G  P   T   L +   +    D   E+   +  + 
Sbjct: 391 LIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSG 450

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +Y +M++ LC +G  +EA  +++EM  +GL P+   Y  L+    +E  +  A 
Sbjct: 451 ILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLAC 510

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +  + M  +    +L  YN LI   S VG IE A   +  + ++G+ PD  TY+ L+ G 
Sbjct: 511 ESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGY 570

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C+  NL+ A ++  + +N  +       +  +    +       + +L+ +       D+
Sbjct: 571 CKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDN 630

Query: 576 HV--ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633
           H+  I++++L+ +  +E+A   +  ++++       I + L + L   +  E  + LL  
Sbjct: 631 HIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDE 690

Query: 634 LQEKCLDSEI 643
           + ++ L+  I
Sbjct: 691 MAKEGLEPGI 700



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/488 (21%), Positives = 201/488 (41%), Gaps = 21/488 (4%)

Query: 40  QLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT-----------HSPLSYH 88
           QLG    L   ++     P   T+H L  G F    +   F             +  +Y 
Sbjct: 400 QLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYG 459

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR-FIIPSLIQGKNTQKAFSVFNEVKF 147
            ++  L  + +     ++L+++    +  ++ +Y   II    +G  +    S+ N  K 
Sbjct: 460 IMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKA 519

Query: 148 NCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           N   + P++ C NSL+  L++ G I+ A + + ++  RG+      +   I  +C+   L
Sbjct: 520 N---VLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNL 576

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L ++    + +   +     ++ G+ K    E+   +L  +     KPD   Y 
Sbjct: 577 EKADQLLQQMLN--SGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYG 634

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           IV        ++    +VL +  K G+ P  + Y   I GL     + +A  L + +   
Sbjct: 635 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                    NALI G   S D   A   F+ ++ KG +P   T + L    CK     + 
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDA 754

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++YK +       D   YNV+ +    +  L +A  + +EM  +G    VS +++L+  
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFSTLVRG 813

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   L+  +KL   M       N +T   +I++F + G++  A R+F  + +K  +  
Sbjct: 814 FCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQS 873

Query: 505 ATTYTSLL 512
           +T   SLL
Sbjct: 874 STDRFSLL 881



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+A      M + G  PT    + L K+L + +  + + ++   +       D+ +Y+  
Sbjct: 192 RTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTF 251

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C +     A  V +EM+R+    +   YN ++   CR   +  A    ++M   G 
Sbjct: 252 LEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGL 311

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S +  TY  L++   + G ++ A  L   M   G+ P+   Y +L++G  +E     AF+
Sbjct: 312 SPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFD 371

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + N+ ++  V   + +    +  LC+ G    A+KLL
Sbjct: 372 ILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +V+V     +G +R A  V+  M   GL P     N L++   R D +    KL   M  
Sbjct: 179 DVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEG 238

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +G   ++ TY+  +    +  + + A ++F  M  +  A +  TY  ++ GLC+   ++ 
Sbjct: 239 AGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 298

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           AF    + V++ +          M  LC+ G    A  LL  +S
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMS 342


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 215/487 (44%), Gaps = 20/487 (4%)

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCED 151
            L  +  ++ +   L+++++  +          I +  +  +  +A   F       C D
Sbjct: 7   GLPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRD 66

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
            G  + N LL  L  +  +   + ++D M   GV+ +   + + I   C+N ++     M
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 212 LDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           LDE+ ++    + + +G++++     G CK  RVEEA   L E    +   + + + +  
Sbjct: 127 LDEMSRKGCHPDEVSHGTIVS-----GMCKLGRVEEARGFLAETVPVQASYNAVVHALCG 181

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           E F+ M  VF    V+ +  + G+ P    Y   +      R +  A  +   +VS   T
Sbjct: 182 E-FR-MWEVFS---VVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCT 236

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            +     AL+ G         A+  +++M+++G  P+  + + L + LC        ++ 
Sbjct: 237 PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDF 296

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  +  N    +  +Y+ +V     +G L  A  +  EMK  G  P+V  Y ++++  C+
Sbjct: 297 FNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCK 356

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           + +   A+ L D+M    C  N  T+N LI +  + G +  AL +FH M   G  P+  T
Sbjct: 357 KMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRT 416

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR---RGH--FLVATKL 562
           Y  LL GL +E N + AF +  + +N+   L+    +T +  LC+   R H   L+   +
Sbjct: 417 YNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMM 476

Query: 563 LRGLSSD 569
           ++G+  D
Sbjct: 477 VQGIQPD 483



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 179/434 (41%), Gaps = 44/434 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE- 144
           SY++++ +L    ++  + SV+ ++    +  +   Y  I+ +  + +  + A ++    
Sbjct: 171 SYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARM 230

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           V   C    P +    +L+     DG + +AL M+  M   G   STI + V I   C  
Sbjct: 231 VSMGCT---PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCI 287

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L   L   + +++  N+++  +     ++ GF     ++ A  + +E++   CKP+ +
Sbjct: 288 GDLKGALDFFNSMKR--NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVV 345

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +         + E ++ K       P T  +   I       R+C+   +G   
Sbjct: 346 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLI------GRLCDCGRVGR-- 397

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR-NKS 381
                                     A+  F+ M   G  P   T + L   L +  N  
Sbjct: 398 --------------------------ALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHK 431

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D    V ++L+ N +   + +YN +++ LC     + A  ++  M  +G+ PD   +N++
Sbjct: 432 DAFAMVIEMLN-NGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAI 490

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + A C+E  +  A  L  QM A  C  N+  Y ILIS+    G++  A+     ML +G+
Sbjct: 491 IHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGI 550

Query: 502 APDATTYTSLLEGL 515
            P+  T+  L+  +
Sbjct: 551 CPNEATWNVLVRAI 564


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/560 (23%), Positives = 236/560 (42%), Gaps = 54/560 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  + P LV  ++   +    S+ + FF WA ++ NF H   +Y 
Sbjct: 67  KWGPDAEKALEVLKLK--VDPRLVREILK--IDVEVSVKIQFFKWAGKRRNFEHDSTTYM 122

Query: 89  SILKSLSLSRQ-----------------------------------INAIDSVLKQVKVN 113
           ++++ L   R                                    +N   SV  QVK  
Sbjct: 123 ALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGR 182

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGY 169
           K    +S Y  II  L+Q  + +K   ++NE+   C ++   P+    ++L++  A    
Sbjct: 183 KCRPTASTYNSIILMLMQEGHHEKVHELYNEM---CSEVHCFPDTVTYSALISAFAKLNR 239

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
            D+A+++FDEM   G++ +   +   +  + +  K+ + L ++ E+R R   +   +   
Sbjct: 240 DDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTE 299

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K  RVE+A+     +    CKPD +    +         + +   +  + + 
Sbjct: 300 --LIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKL 357

Query: 290 LGVAPRTNDYREFILGLI-VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
           L  AP    Y   I  L   +  + EA    E +            + LI G   +    
Sbjct: 358 LNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVE 417

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A++    M EKG  P  +   +L   L    + D   E+++ L  N   +    Y VM+
Sbjct: 418 KALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMI 477

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
                 GRL EA  +  EMK+ G  PDV  YN+LM    R + +  A  L+  M  +GC+
Sbjct: 478 KHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCT 537

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-- 525
            ++ ++NI+++  +  G  +GAL +F  M    + PD  ++ ++L  L +    + A   
Sbjct: 538 PDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKL 597

Query: 526 --EVFNKSVNHDVMLARSIL 543
             E+ +K   +D++   SIL
Sbjct: 598 MQEMSSKGFQYDLITYSSIL 617


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 223/505 (44%), Gaps = 34/505 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ LS SLV  V+   L+   S  + FF WA +Q  + H+   Y++++  +        
Sbjct: 126 FREKLSESLVIEVLR--LIERPSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKV 183

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI----GPEICN 158
            + +L+Q++ +    D  V+   +  L++      +FS+  E     +D          N
Sbjct: 184 PEELLQQIRDD----DKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYN 239

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
            L+        +D+A  +  EMS   +         + +  C+  K  + L++++     
Sbjct: 240 CLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTLMET---- 295

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
             + +  +V    +I G C+    EEA   L+ +R   C P+ + Y  +     L G + 
Sbjct: 296 -ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL-----LCGCLN 349

Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           ++++     VL      G  P    +   +           A +L + +V    T    V
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVV 409

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST--------LSNLSKNLCKRNKSDELV 385
            N LIGS+   D  S       + EK     L+T        +S+ ++ LC   K ++  
Sbjct: 410 YNILIGSICG-DKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAF 468

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            V + +    +  D  +Y+ ++ +LC + ++  A+ + +EMKR GL  DV  Y  ++++ 
Sbjct: 469 SVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSF 528

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+  L+  A+K +++M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+ 
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNI 588

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TY++L++G C+   ++ A ++F +
Sbjct: 589 VTYSALIDGHCKAGQMEKACQIFER 613



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/569 (21%), Positives = 225/569 (39%), Gaps = 66/569 (11%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT------- 135
           SP  ++S++ +   S   +    +LK++     T    VY  +I S+   K++       
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLE 430

Query: 136 --QKAFS-------VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
             +KA+S       V N++  +          S    L S G  + A  +  EM  +G  
Sbjct: 431 LAEKAYSEMLATGVVLNKINVS----------SFTRCLCSAGKYEKAFSVIREMIGQGFI 480

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
             T  +   +   C  +K+     + +E+++    ++       +++  FCK   +E+A 
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKR--GGLVADVYTYTIMVDSFCKAGLIEQAR 538

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           K  +E+R   C P+ + Y  +   +     V     + +     G  P    Y   I G 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 598

Query: 307 I----------VERRICEAKELGEVIVSGKFTIDDD-------VLNALIGSVSSIDP-RS 348
                      +  R+C +K++ +V +  K   DD+       +  AL+     +     
Sbjct: 599 CKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEE 658

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    + M  +G  P       L   LCK  K DE  EV   +S + +   + +Y+ ++ 
Sbjct: 659 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLID 718

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                 R   A  V+ +M      P+V  Y  +++  C+      A KL   M   GC  
Sbjct: 719 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP 778

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  +I  F  +G+IE  L L   M  KGVAP+  TY  L++  C+   L  A  + 
Sbjct: 779 NVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLL 838

Query: 529 N--KSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS------HVI 578
              K  +     A  R ++  F         F+ +     GL  ++G  D+      + +
Sbjct: 839 EEMKQTHWPTHAAGYRKVIEGF------NKEFIESL----GLLDEIGQDDTAPFLSLYRL 888

Query: 579 LLKSLADAREVEMAIEHIKWIQESSPTML 607
           L+ +L  A+ +EMA+  ++ +   S T++
Sbjct: 889 LVDNLIKAQRLEMALRLLEEVATFSATLV 917



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 207/503 (41%), Gaps = 75/503 (14%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L  L  + ++     + +++K   +  D   Y  ++ S  +    ++A   FNE+
Sbjct: 485 TYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 544

Query: 146 KFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +    ++G  P +    +L+        +  A ++F+ M   G   + + +   I   C+
Sbjct: 545 R----EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 202 NAKLGQVLSML--------------------DEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             ++ +   +                     D+  +R N +I G+     ++ GFCK  R
Sbjct: 601 AGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGA-----LLDGFCKLHR 655

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           VEEA K+LD + +  C+P+ I Y  + +    +G + E + V  +  + G       Y  
Sbjct: 656 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSS 715

Query: 302 FILGLI-VERRICEAKELGEVI---VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            I     V+R+   +K L +++    +    I  ++++ L   V   D   A      M 
Sbjct: 716 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC-KVGKTD--EAYKLMQMME 772

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           EKG  P + T + +     +  K +  +E+ + + +     +  +Y V++   C +G L 
Sbjct: 773 EKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 832

Query: 418 EAYGVIQEMKRK------------------------------GLD---PDVSFYNSLMEA 444
            A+ +++EMK+                               G D   P +S Y  L++ 
Sbjct: 833 VAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDN 892

Query: 445 CCREDLLRPAKKLWDQM--FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
             +   L  A +L +++  F++       TYN LI       +++ A RLF  M +KGV 
Sbjct: 893 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVI 952

Query: 503 PDATTYTSLLEGLCQETNLQAAF 525
           P+  T+ SL++GL + + +  A 
Sbjct: 953 PEMQTFCSLIKGLFRNSKISEAL 975



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 17/310 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+  L   G +D A ++  EMS  G   +   +   I ++ +  +      +L ++  
Sbjct: 679 DALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKML- 737

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            ENS     VI   +I G CK  + +EA+K++  +  + C+P+ + Y  + + F  +G +
Sbjct: 738 -ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKI 796

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L++    GVAP    YR  I        +  A  L E +    +         +
Sbjct: 797 ETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKV 856

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSD---ELVEVYKVL 391
           I   +    +  I     + E G+    P LS    L  NL K  + +    L+E     
Sbjct: 857 IEGFN----KEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATF 912

Query: 392 SAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           SA   DY +   +YN ++  LC + ++ +A+ +  EM +KG+ P++  + SL++   R  
Sbjct: 913 SATLVDYSS---TYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNS 969

Query: 450 LLRPAKKLWD 459
            +  A  L D
Sbjct: 970 KISEALLLLD 979



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+ ST + L +   K +  D    V++ +S  +   D  +       LC  G+ REA  +
Sbjct: 233 PSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTL 292

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
              M+ +   PD  FY  L+   C   L   A    ++M A+ C  N+ TY+ L+     
Sbjct: 293 ---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
             ++    R+ + M+ +G  P    + SL+   C   +   A+++  K V
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV 399



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 34/266 (12%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYN 404
           P + I FF +   +      S + N   +L  R+  +++ E + + +  +D     E  N
Sbjct: 145 PSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKEVFGEFLN 204

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM--- 461
           V+V   C SG    A   +  +K     P  S YN L++A  + D L  A  +  +M   
Sbjct: 205 VLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLA 264

Query: 462 ------FASGCSG-----------------------NLKTYNILISKFSEVGEIEGALRL 492
                 F   C                         +   Y  LIS   E    E A+  
Sbjct: 265 NLRMDGFTLRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDF 324

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            + M      P+  TY++LL G   +  L     V N  +      +  I ++ + + C 
Sbjct: 325 LNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCT 384

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVI 578
            G    A KLL+ +    GH+  +V+
Sbjct: 385 SGDHSYAYKLLKKMVK-CGHTPGYVV 409



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIG-PEICNSLLAVLASDGYIDNALKMF 177
           S+YR ++ +LI+ +  + A  +  EV  F+   +      NSL+  L     +D A ++F
Sbjct: 884 SLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLF 943

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
            EMS +GV      F   I     N+K+ + L +LD
Sbjct: 944 SEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLD 979


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 8/408 (1%)

Query: 168  GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
            G +D   K+ + M  +G++ ++  +G  I   C   KL +      E+ ++   ++  +V
Sbjct: 738  GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTV 795

Query: 228  IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            +   +I GFCK   +  A K   E+  R+  PD + Y  +   F  +G + E   +  + 
Sbjct: 796  VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 855

Query: 288  RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
               G+ P +  + E I G      + +A  +   ++    + +      LI G     D 
Sbjct: 856  FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 915

Query: 347  RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             SA    + M + G  P + T +++   LCK    +E V++     A     D  +Y  +
Sbjct: 916  DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 975

Query: 407  VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
            +   C SG + +A  +++EM  KGL P +  +N LM   C   +L   +KL + M A G 
Sbjct: 976  MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1035

Query: 467  SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
            + N  T+N L+ ++     ++ A  ++ +M  +GV PD  TY +L++G C+  N++ A+ 
Sbjct: 1036 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 1095

Query: 527  VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
            +F +       ++ S  S  +    +R  FL A ++       GL++D
Sbjct: 1096 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P + + S +    C+  + D++ ++ +V+       +   Y  ++  LC   +L E
Sbjct: 718 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 777

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A     EM R+G+ PD   Y +L++  C+   +R A K + +M +   + ++ TY  +IS
Sbjct: 778 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 837

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F ++G++  A +LFH M  KG+ PD+ T+T L+ G C+  +++ AF V N  +      
Sbjct: 838 GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 897

Query: 539 ARSILSTFMISLCRRGHFLVATKLL 563
                +T +  LC+ G    A +LL
Sbjct: 898 NVVTYTTLIDGLCKEGDLDSANELL 922



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/471 (21%), Positives = 197/471 (41%), Gaps = 42/471 (8%)

Query: 79   NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
             +T   +SY +++       +++ +  +++ +K   +  +S +Y  II  L +     +A
Sbjct: 719  GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 778

Query: 139  FSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
               F+E+    + I P+  +  +L+      G I  A K F EM  R +    + +   I
Sbjct: 779  EEAFSEMIR--QGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 836

Query: 197  WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              FC+   + +   +  E+  +   +   SV    +I+G+CK   +++AF+V + +    
Sbjct: 837  SGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 894

Query: 257  CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA- 315
            C P+ + Y  + +     G +     +L +  K+G+ P    Y   + GL     I EA 
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 316  KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            K +GE   +G        LNA                              T + L    
Sbjct: 955  KLVGEFEAAG--------LNA---------------------------DTVTYTTLMDAY 979

Query: 376  CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            CK  + D+  E+ K +        + ++NV+++  C  G L +   ++  M  KG+ P+ 
Sbjct: 980  CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 1039

Query: 436  SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
            + +NSL++  C  + L+ A  ++  M + G   + KTY  L+    +   ++ A  LF  
Sbjct: 1040 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 1099

Query: 496  MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
            M  KG +   +TY+ L++G  +      A EVF++     +   + I   F
Sbjct: 1100 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 1150



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 20/236 (8%)

Query: 347 RSAIVFFNFMIEKGRVPTLST----LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           R A   F  M+  G V ++ +    L+ LSK+  K   +   + V++         ++ S
Sbjct: 635 REARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATA---IIVFREFPEVGVCWNVAS 691

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++ F+C  GR++EA+ ++  M+ KG  PDV  Y++++   CR   L    KL + M 
Sbjct: 692 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 751

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N   Y  +I     + ++  A   F  M+ +G+ PD   YT+L++G C+  +++
Sbjct: 752 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 811

Query: 523 AA----FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           AA    +E+ ++ +  DV+   +I+S F    C+ G  + A KL      +GL  D
Sbjct: 812 AASKFFYEMHSRDITPDVLTYTAIISGF----CQIGDMVEAGKLFHEMFCKGLEPD 863



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 4/270 (1%)

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS--ID 345
           +  G  PR  D   F   L+    + EA+ + E +++    +  D  N  +  +S     
Sbjct: 612 KDWGSDPRVFDV--FFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYK 669

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
             +AI+ F    E G    +++ + +   +C+  +  E   +  ++    Y  D+ SY+ 
Sbjct: 670 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 729

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +V+  C  G L + + +I+ MKRKGL P+   Y S++   CR   L  A++ + +M   G
Sbjct: 730 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 789

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +   Y  LI  F + G+I  A + F+ M  + + PD  TYT+++ G CQ  ++  A 
Sbjct: 790 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 849

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           ++F++     +       +  +   C+ GH
Sbjct: 850 KLFHEMFCKGLEPDSVTFTELINGYCKAGH 879


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/521 (22%), Positives = 235/521 (45%), Gaps = 48/521 (9%)

Query: 88  HSILKSLSLSRQI--NAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           HS L S    +Q+  +A+D +L Q++ +  I  D+ VY  ++  L++G   +   SV++E
Sbjct: 113 HSFLDSYE-GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSE 171

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      I P++   N+L+  L     +  A+ M +EMS RGV      F   +  F E 
Sbjct: 172 M--GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +   L +  + R  E       V   ++I+G+CK  RVE+A   + +      +PD I
Sbjct: 230 GSIEAALRV--KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y                                     F+ GL     +  A ++ +V+
Sbjct: 288 TYNT-----------------------------------FVNGLCQNDHVGHALKVMDVM 312

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V      D    N ++  +  +     A    N M+++G +P ++T + L   LC  N+ 
Sbjct: 313 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRL 372

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E +++ + ++      D+ ++N++++ LC  G    A  + +EMK  G  PD   YN+L
Sbjct: 373 EEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C    L  A  L   M ++GC  +  TYN +I    +   IE A  +F  M  +G+
Sbjct: 433 IDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI 492

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           + +A T+ +L++GLC++  +  AF + N+ ++  +       ++ +   C++G    A  
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 562 LLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQ 600
           +L  ++++    D  ++  L+  L  A   ++A++ ++ ++
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 207/445 (46%), Gaps = 17/445 (3%)

Query: 78  PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137
           P+ + SP   H +L + + +R       +  Q+K   + +  +    ++ SL     +  
Sbjct: 44  PHLSASPSLPHLLLTASAAARPHATSLRLYAQLKSLSVPIPVASLHPLLSSL----PSAP 99

Query: 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           AF++F ++      +     N +L  L + G    AL++  +M       + + +   I 
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPRP----NAVTYNTVIA 155

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-E 256
            FC   ++   L ++ E+R+R     +    A LI  G+CK  R+E+A KV DE+  + E
Sbjct: 156 GFCARGRVQAALEVMREMRERGGIAPDKYTYATLI-SGWCKIGRMEDAVKVFDEMLTKGE 214

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRIC 313
             P  + Y  +   +  +G +   +V L+ +  +   G+A     Y   +  L ++ R  
Sbjct: 215 VAPSAVMYNALIGGYCDVGKL---DVALQYREDMVQRGIAMTVATYNLLMHALFMDARAS 271

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A  + E +    F+ D    N LI G     + + A+  F  M +KG   T  T ++L 
Sbjct: 272 DAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLI 331

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
               ++ +  E   ++ V        D+  YN +++  CT G +  AY ++ EM++K + 
Sbjct: 332 YVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIP 391

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD   YN+LM   C    L  A+ L D+M   G   +L +YN LIS +S  G+I+ ALR+
Sbjct: 392 PDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRV 451

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQ 517
              M++KG  P   TY +L++GLC+
Sbjct: 452 RDEMMDKGFNPTLMTYNALIQGLCK 476



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 163/407 (40%), Gaps = 86/407 (21%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +F ++    +   T  F + +   C   K  + L +L ++  R N++   +VIA   
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQM-PRPNAVTYNTVIA--- 155

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC   RV+ A +V+ E+                                  + + G+
Sbjct: 156 --GFCARGRVQAALEVMREM----------------------------------RERGGI 179

Query: 293 APRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRS 348
           AP    Y   I G     R+ +A K   E++  G+      + NALIG    V  +D   
Sbjct: 180 APDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLD--V 237

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ +   M+++G   T++T                                   YN+++ 
Sbjct: 238 ALQYREDMVQRGIAMTVAT-----------------------------------YNLLMH 262

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L    R  +AY V++EM++ G  PDV  YN L+   C+E   + A +++++M   G   
Sbjct: 263 ALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRA 322

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
              TY  LI  FS  G+++   RLF+  ++KG+ PD   Y +L+   C   +++ A+E+ 
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIM 382

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +     +       +T M   C  G    A  L+     RG+  DL
Sbjct: 383 AEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDL 429


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 221/516 (42%), Gaps = 56/516 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-----KVNKITLDSSV 121
           AL  F+  S++ +   +P  Y +I+  L+ ++       +++ +     K  +  +  SV
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSV 112

Query: 122 YRFIIPSLIQGKNTQKAFSV----FNEVKFNCE--------DIGP--EICNSLLAVLASD 167
           +  ++  L   K T   F V    F+E+    E        D+ P  + CN +L  L   
Sbjct: 113 FN-VLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKK 171

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  D   K++ +M  RG   + + +G  I   C      +   + DE+   E  +    V
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI--EKKIFPTVV 229

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           I  ++I G C   R+ EA  +   +R     P+   Y  + + +  +  V +   +  + 
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM 289

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              G+ P    +   I GL      C+  E+   + + KF ID                 
Sbjct: 290 LGDGLLPNVVTFGILIDGL------CKTDEM---VSARKFLID----------------- 323

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                   M   G VP +   + L    CK     E + ++  +  ++   D+ +Y++++
Sbjct: 324 --------MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC   R+ EA G++QEMK+KG  P+   YN+L++  C+E  +  A ++  QM   G  
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ T++ LI  + + G++E A+ L+  M+ KG+ PD   YT+L++G  ++ N + AF +
Sbjct: 436 PNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL 495

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             +     +      LS  +  LC+ G    A KL 
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 176/427 (41%), Gaps = 25/427 (5%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLL 161
           D V +    N +T     Y  +I    +  +  KAF +F+E+    + I P   I   L+
Sbjct: 183 DMVARGASPNVVT-----YGTLIDGCCRQGDFLKAFRLFDEMIE--KKIFPTVVIYTILI 235

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L  +  I  A  MF  M + G+  +   +   +  +C+ A + + L +  E+    + 
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG--DG 293

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           ++   V   ++I G CK   +  A K L ++      P+   Y  + + +   G++ E  
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
            +  +  K  + P    Y   I GL    R+ EA  L + +    F  +    N LI G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
               +   AI   + M EKG  P + T S L    CK  K +  + +Y  +       D+
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW-- 458
            +Y  ++      G  +EA+ + +EM+  GL P+V   + L++  C++  +  A KL+  
Sbjct: 474 VAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533

Query: 459 -----------DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                      +++  S CS N   Y  LI      G I  A + F +M   G+ PD  T
Sbjct: 534 KTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFT 593

Query: 508 YTSLLEG 514
              +++G
Sbjct: 594 CIVIIQG 600



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 2/244 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +  M+ +G  P + T   L    C++    +   ++  +     F  +  Y +++  LC 
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             R+ EA  + + M+  G+ P++  YN++M+  C+   ++ A +L+ +M   G   N+ T
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVT 300

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           + ILI    +  E+  A +   +M   GV P+   Y  L++G C+  NL  A  + ++  
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVE 590
            H+++      S  +  LC       A  LL+ +     L ++ ++  L+        +E
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNME 420

Query: 591 MAIE 594
            AIE
Sbjct: 421 KAIE 424



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/489 (21%), Positives = 199/489 (40%), Gaps = 53/489 (10%)

Query: 51  LVARVINPYLLTHHSL------------ALGFFNWASQQPNFTHSPLSYHSILKSLSLSR 98
           +VAR  +P ++T+ +L            A   F+   ++  F  + + Y  +++ L    
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFP-TVVIYTILIRGLCGES 242

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158
           +I+  +S+ + ++ + +  +   Y  ++    +  + +KA  ++ E+          + +
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM----------LGD 292

Query: 159 SLLAVLASDGYIDNALKMFDEM-SHRGVEFSTIGFGV----FIWK-----FCENAKLGQV 208
            LL  + + G + + L   DEM S R        FGV    F++      +C+   L + 
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           LS+  E+ K E  ++       ++I G C   R+EEA  +L E++ +   P+ + Y  + 
Sbjct: 353 LSLHSEIEKHE--ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           + +   G++ +   V  +  + G+ P    +   I G     ++  A  L   +V     
Sbjct: 411 DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            D     ALI G     + + A      M E G  P + TLS L   LCK  +  + +++
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 388 YKVLSANDYFTDMES-------------YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           +   +  D      +             Y  ++  LCT GR+ +A     +M+  GL PD
Sbjct: 531 FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V     +++   R   LR    L   +   G   N   Y +L   + E G ++ AL    
Sbjct: 591 VFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSAL---- 646

Query: 495 NMLEKGVAP 503
           +   +GV P
Sbjct: 647 SFCGEGVQP 655



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 94/480 (19%), Positives = 179/480 (37%), Gaps = 42/480 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y  ++K L    ++   D +L+++K      ++  Y  +I    +  N +KA  V ++
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + I P I   ++L+      G ++ A+ ++ EM  +G+    + +   I    ++
Sbjct: 429 MTE--KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKD 486

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL------------- 249
               +   +  E++  E  +         +I G CK  R+ +A K+              
Sbjct: 487 GNTKEAFRLHKEMQ--EAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           +EL    C P+ + Y  + +     G +F+        R  G+ P        I G    
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK-GRV---PT 364
             + +   L   I+      +  V   L  G   S   +SA+ F    ++   RV   P 
Sbjct: 605 MHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPW 664

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM------------VSFLCT 412
            S        LC   +  E    Y        F  +  ++ +            V F+  
Sbjct: 665 GSYTIRSRFQLCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQ 724

Query: 413 SG--RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
            G  R  +A  + ++M+     PD+      + AC     L   + +   +   G   +L
Sbjct: 725 KGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDL 784

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              N LI+ +S+ GEI  A RLF    +K    D TT+TS++ G       + A ++F +
Sbjct: 785 CLNNSLINMYSKCGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTE 840


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 184/407 (45%), Gaps = 13/407 (3%)

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
           ++D    +  ++   G+E + I F   I  FC   K+G+ + + D +  R       S  
Sbjct: 141 HVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSY- 199

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             +II G C+  +  E  K+L+ +++  C+PD + Y  + +       V E   +  K +
Sbjct: 200 -SIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMK 258

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI------GSVS 342
             G+ P    Y   I GL    R  EA  L   +  G    D    + LI      G VS
Sbjct: 259 GTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVS 318

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                 A V    M E G  P ++T + L    C R +  E  +V++V+ +     D+ S
Sbjct: 319 E-----ARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFS 373

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           ++++V+  C + R+ EA  +  EM  +GL PD   YN+L+   C+      A++L+  M 
Sbjct: 374 FSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMH 433

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           ++G   NL TY+IL+   S+ G ++ A+ LF  M   G+ PD  TY  +++G+C+    +
Sbjct: 434 SNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFK 493

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            A E+F +     +     + +  +  +C+ G    A K  R +  D
Sbjct: 494 DARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKD 540



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 217/514 (42%), Gaps = 74/514 (14%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  FN      N   S + +  +  +L   +    + S+ KQ+++  I+ D      +I
Sbjct: 75  ALSAFNHMVNT-NPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILI 133

Query: 127 PSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
               +  +    FSV  ++ K   E   P +   ++L+     +G I  A+++FD M  R
Sbjct: 134 NCFCRLCHVDYGFSVLGKIIKLGLE---PNVITFSTLINGFCIEGKIGRAIELFDVMVAR 190

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLI-------- 232
           G + +   + + I   C   K  +V+ +L+ ++      + +I  +++  L         
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 233 IHGFCKGK----------------------RVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +H FCK K                      R +EAF +L+E++     PD +A+ ++ + 
Sbjct: 251 VHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDI 310

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G V E  V+LK   ++GV P    Y   + G  +   + EA+++ EV         
Sbjct: 311 MCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEV--------- 361

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                                    MI KGR+P + + S L    CK  + DE  +++  
Sbjct: 362 -------------------------MISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDE 396

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           ++      D  SYN ++S LC + R  EA  + ++M   G  P++  Y+ L++   ++  
Sbjct: 397 MTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGY 456

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A  L+  M  SG   +L TYNI+I    + G+ + A  LF  +  KG+ P+    T 
Sbjct: 457 LDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTP 516

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            ++G+C+   L  A + F +    D   A+  ++
Sbjct: 517 TIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +  L  A  R    +    L  QM  +G S ++ +  ILI+ F  +  ++    +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI------LSTF 546
              +++ G+ P+  T+++L+ G C E  +  A E+F      DVM+AR         S  
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELF------DVMVARGYKPNVHSYSII 202

Query: 547 MISLCRRGHFLVATKLL 563
           +  LCR G      KLL
Sbjct: 203 IKGLCRVGKTTEVIKLL 219


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 241/548 (43%), Gaps = 33/548 (6%)

Query: 18  ISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT---HHSLALGFFNWA 74
           +S+++      K   LL+   H L   DSLS     +  + +LL      +L L F  WA
Sbjct: 25  LSSTSHALLVDKAITLLKFHPHHL---DSLSSRFTPQSASYFLLKSQFDQTLTLKFLTWA 81

Query: 75  SQQPNF-THSP-LSYH------------SILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
              P F +H   LS H            ++ + L+LS    +  S+ + +K +    +SS
Sbjct: 82  RNHPFFDSHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSS 141

Query: 121 --VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASDGYID-NALKM 176
             V+  ++ S        +A +  N  K +    G    NS+L A++ S G +  +A ++
Sbjct: 142 SAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           + EM    V  +   + + I  FC   +L + L    E+ +  N  +   V    +I  +
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER--NGCLPNVVTYNTLIDAY 259

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  R++EAF +L  +  +  +P+ I+Y ++       GS+ E   +L++    G  P  
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 319

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNF 355
             Y   + G   E    +A  +   +V    +       ALI S+  + +   A+ FF+ 
Sbjct: 320 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 379

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  +G  P   T + L     ++   +E   +   ++ + +   + +YN  +   C   R
Sbjct: 380 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 439

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA GV+QEM  KGL PDV  Y++++   CR+  L  A ++  +M   G S +  TY+ 
Sbjct: 440 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI    E+  +  A  L   ML+ G+ PD  TYT+L+   C E +L  A  +      HD
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL------HD 553

Query: 536 VMLARSIL 543
            M+ +  L
Sbjct: 554 EMIHKGFL 561



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 152/325 (46%), Gaps = 1/325 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I GFC    +++      E+    C P+ + Y  + + +  MG + E   +LK     
Sbjct: 219 ILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSK 278

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   I GL  E  + EA E+ E +    FT D+   N L+ G     +   A
Sbjct: 279 GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 338

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +V    M+  G  P++ T + L  ++CK    +  +E +  +       +  +Y  ++  
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G L EAY ++ EM   G  P V  YN+ +   C  + +  A  +  +M   G + +
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +Y+ +IS F   GE++ A ++   M+EKGV+PDA TY+SL++GLC+   L  A ++  
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 518

Query: 530 KSVNHDVMLARSILSTFMISLCRRG 554
           + ++  +       +T + + C  G
Sbjct: 519 EMLDMGLPPDEFTYTTLINAYCVEG 543



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/562 (22%), Positives = 226/562 (40%), Gaps = 88/562 (15%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSR---QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131
           ++   F    LSY+S+L ++  SR   +++A + V +++  ++++ +   Y  +I     
Sbjct: 168 AKSSGFMPGVLSYNSVLDAIVRSRGSVKLSA-EEVYREMIRSRVSPNVYTYNILIRGFCS 226

Query: 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
               QK    F E++ N         N+L+      G ID A  +   MS +G++ + I 
Sbjct: 227 VGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLIS 286

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMINGS----------------- 226
           + V I   C    + +   +L+E+  +         N+++NG                  
Sbjct: 287 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 346

Query: 227 --------VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
                   V    +I+  CK + +  A +  D++RIR  +P+   Y  + + F   G + 
Sbjct: 347 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 406

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E   +L +  + G +P    Y  FI G  V  R+ EA                      +
Sbjct: 407 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEA----------------------L 444

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G V              M+EKG  P + + S +    C++ + D   ++ + +       
Sbjct: 445 GVVQE------------MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +Y+ ++  LC   RL EA  + QEM   GL PD   Y +L+ A C E  L  A  L 
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE----- 513
           D+M   G   +  TY++LI+  ++      A RL   ++ +   P   TY +L+E     
Sbjct: 553 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNI 612

Query: 514 ----------GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
                     G C +  +  A  VF   V  +     ++ +  +   CR G+   A  L 
Sbjct: 613 EFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLY 672

Query: 564 RGL--SSDLGHSDSHVILLKSL 583
           + +  S  + H+ + + L+K+L
Sbjct: 673 KEMIHSGFVPHTVTVITLIKAL 694



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 194/472 (41%), Gaps = 30/472 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     +SY+ I+  L     +     +L+++     T D   Y  ++    +  N  
Sbjct: 281 QPNL----ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFH 336

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +  E+  N   + P +    +L+  +     ++ A++ FD+M  RG+  +   +  
Sbjct: 337 QALVIHAEMVRN--GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELR 253
            I  F     L +   +L+E+ +   S  + SV+     IHG C  +R+EEA  V+ E+ 
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTE---SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 451

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRI 312
            +   PD ++Y  +   F   G + +R   +K++  + GV+P    Y   I GL   RR+
Sbjct: 452 EKGLAPDVVSYSTIISGFCRKGEL-DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRL 510

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA +L + ++      D+     LI +     D   A+   + MI KG +P   T S L
Sbjct: 511 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 570

Query: 372 SKNLCKRNKSDELVEV---------------YKVLSANDYFTDMESYNVMVSFLCTSGRL 416
              L K+ ++ E   +               Y  L  N    + +S   ++   C  G +
Sbjct: 571 INGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLM 630

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  V + M  +   P  + YN ++   CR   L  A  L+ +M  SG   +  T   L
Sbjct: 631 HEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITL 690

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           I    + G  E    +  + L      +A     L+E   +E N++A   V 
Sbjct: 691 IKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVL 742


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 201/440 (45%), Gaps = 23/440 (5%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  +   G +D A+ +  +++  G E   + +   +   C   + G V  ++DE+ 
Sbjct: 184 CNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM- 242

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            R +   N      LI +  C+    E   +VL ++    C PD   Y  + +     G 
Sbjct: 243 VRVDCAPNIVTFNTLIGY-LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L +    G+ P    Y   + GL    R  EA+EL   +      +DD   N 
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 337 LI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           L+      G V  +     I     M+  G +P + T + +    CK    DE V + K 
Sbjct: 362 LVDFFCQNGLVDRV-----IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S+     +  SY +++  LC++GR  +A  ++ +M ++G  P+   +N+L+   C++ L
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L  QM  +GCS +L +Y+ +I    + G+ E AL L + M+ KG++P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 511 LLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +   L +E  +    ++F+     ++  D +L  +++S    SLC+R     A      +
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS----SLCKRWETDRAIDFFAYM 592

Query: 567 SSD--LGHSDSHVILLKSLA 584
            S+  + +  ++ +L+K LA
Sbjct: 593 VSNGCMPNESTYTMLIKGLA 612



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 199/450 (44%), Gaps = 44/450 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+++LK L ++++   ++ ++ ++    + +D +       +LI        F   +E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEM----VRVDCAPNIVTFNTLIGYLCRNGLFERVHE 272

Query: 145 VKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V     + G  P+I    +++  +  +G+++ A ++ + M   G++ + + +   +   C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  +   +L E+ +++  +    V   +++  FC+   V+   ++L+++    C PD
Sbjct: 333 SAERWKEAEELLSEMFQKDCPL--DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R  +A+EL  
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL-- 448

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                                            + MI++G  P   T + L   LCK+  
Sbjct: 449 --------------------------------MSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +  A  RE  +    +++D +  +    +   YN +IS   +  E + A+  F  M+  G
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG 596

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             P+ +TYT L++GL  E   + A E+ ++
Sbjct: 597 CMPNESTYTMLIKGLASEGLAKEAQELLSE 626



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 96/205 (46%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P       + +  C+       V V + + A     D  + N++++ +C  G + E
Sbjct: 140 KGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDE 199

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A G+++++   G + D+  YN++++  C        ++L D+M    C+ N+ T+N LI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
                G  E    +   M E G  PD   Y ++++G+C+E +L+ A E+ N+  ++ +  
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 539 ARSILSTFMISLCRRGHFLVATKLL 563
                +T +  LC    +  A +LL
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELL 344



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 21/313 (6%)

Query: 292 VAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           V P    +   + GL    RI +A E L E+   G   I       L  +  S   R+++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  KG        + +   +C++   DE V + + L+      D+ SYN ++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   ++ EM R    P++  +N+L+   CR  L     ++  QM   GC+ ++
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + Y  +I    + G +E A  + + M   G+ P+   Y ++L+GLC     + A E+ ++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 531 SVNHDVMLARSILSTFMISLCRRG-------------------HFLVATKLLRGLSSDLG 571
               D  L     +  +   C+ G                     +  T ++ G   + G
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE-G 405

Query: 572 HSDSHVILLKSLA 584
             D  V+LLKS++
Sbjct: 406 LIDEAVMLLKSMS 418


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 201/440 (45%), Gaps = 23/440 (5%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  +   G +D A+ +  +++  G E   + +   +   C   + G V  ++DE+ 
Sbjct: 184 CNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM- 242

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            R +   N      LI +  C+    E   +VL ++    C PD   Y  + +     G 
Sbjct: 243 VRVDCAPNIVTFNTLIGY-LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L +    G+ P    Y   + GL    R  EA+EL   +      +DD   N 
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 337 LI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           L+      G V  +     I     M+  G +P + T + +    CK    DE V + K 
Sbjct: 362 LVDFFCQNGLVDRV-----IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S+     +  SY +++  LC++GR  +A  ++ +M ++G  P+   +N+L+   C++ L
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L  QM  +GCS +L +Y+ +I    + G+ E AL L + M+ KG++P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 511 LLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +   L +E  +    ++F+     ++  D +L  +++S    SLC+R     A      +
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS----SLCKRWETDRAIDFFAYM 592

Query: 567 SSD--LGHSDSHVILLKSLA 584
            S+  + +  ++ +L+K LA
Sbjct: 593 VSNGCMPNESTYTMLIKGLA 612



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 199/450 (44%), Gaps = 44/450 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+++LK L ++++   ++ ++ ++    + +D +       +LI        F   +E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEM----VRVDCAPNIVTFNTLIGYLCRNGLFERVHE 272

Query: 145 VKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V     + G  P+I    +++  +  +G+++ A ++ + M   G++ + + +   +   C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  +   +L E+ +++  +    V   +++  FC+   V+   ++L+++    C PD
Sbjct: 333 SAERWKEAEELLSEMFQKDCPL--DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R  +A+EL  
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL-- 448

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                                            + MI++G  P   T + L   LCK+  
Sbjct: 449 --------------------------------MSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+   Y+S
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +  A  RE  +    +++D +  +    +   YN +IS   +  E + A+  F  M+  G
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG 596

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             P+ +TYT L++GL  E   + A E+ ++
Sbjct: 597 CMPNESTYTMLIKGLASEGLAKEAQELLSE 626



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 96/205 (46%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P       + +  C+       V V + + A     D  + N++++ +C  G + E
Sbjct: 140 KGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDE 199

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A G+++++   G + D+  YN++++  C        ++L D+M    C+ N+ T+N LI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
                G  E    +   M E G  PD   Y ++++G+C+E +L+ A E+ N+  ++ +  
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 539 ARSILSTFMISLCRRGHFLVATKLL 563
                +T +  LC    +  A +LL
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELL 344



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 21/313 (6%)

Query: 292 VAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           V P    +   + GL    RI +A E L E+   G   I       L  +  S   R+++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  KG        + +   +C++   DE V + + L+      D+ SYN ++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   ++ EM R    P++  +N+L+   CR  L     ++  QM   GC+ ++
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + Y  +I    + G +E A  + + M   G+ P+   Y ++L+GLC     + A E+ ++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 531 SVNHDVMLARSILSTFMISLCRRG-------------------HFLVATKLLRGLSSDLG 571
               D  L     +  +   C+ G                     +  T ++ G   + G
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE-G 405

Query: 572 HSDSHVILLKSLA 584
             D  V+LLKS++
Sbjct: 406 LIDEAVMLLKSMS 418


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 194/447 (43%), Gaps = 49/447 (10%)

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           GP++   N+++A     G +D A ++  +M    VE     +   I   C   +    L+
Sbjct: 131 GPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALA 187

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +L+++ +R    +   V   +++   CK    ++A K+LDE+  + C PD + Y +V   
Sbjct: 188 VLEDMFRR--GCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G V +    LK     G  P T  Y   + GL    R  +A++L E          
Sbjct: 246 ICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEE--------- 296

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                                    M  KG  P + T + L   LC+R   +  +EV + 
Sbjct: 297 -------------------------MAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ 331

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +       +  SYN ++   C   ++ +A   ++ M  +G  PD+  YN+L+ A CR   
Sbjct: 332 MPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGE 391

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L  Q+   GCS  L +YN +I   ++ G+ + AL L   M  KG+ PD  TY++
Sbjct: 392 VDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYST 451

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SS 568
           +  GLC+E  ++ A   F K  +  +    ++ +  ++ LC+R     A  L   +  S 
Sbjct: 452 IASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSG 511

Query: 569 DLGHSDSHVILLKSLA------DAREV 589
            + +  ++ IL++ LA      +ARE+
Sbjct: 512 CMPNESTYTILVEGLAYEGLVKEAREL 538



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 176/382 (46%), Gaps = 5/382 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L   G   NAL + ++M  RG     + + + +   C+ +   Q + +LDE+  
Sbjct: 170 NTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMH- 228

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +       V   ++++G C+  RVE+A + L  L    C+P+ ++Y IV +        
Sbjct: 229 -DKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERW 287

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AKELGEVIVSGKFTIDDDVLNA 336
            + E ++++    G  P    +   ++  +  R + E A E+ E +     T +    N 
Sbjct: 288 EDAEKLMEEMAHKGCPPNVVTF-NMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNP 346

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ +         A+ F   M+ +G  P + + + L   LC+  + D  +E+   L    
Sbjct: 347 LLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKG 406

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + SYN ++  L  +G+ +EA  ++ EM  KGL PD+  Y+++    CRED +  A 
Sbjct: 407 CSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAV 466

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + + ++   G       YN ++    +  E   A+ LF  M+  G  P+ +TYT L+EGL
Sbjct: 467 RTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGL 526

Query: 516 CQETNLQAAFEVFNKSVNHDVM 537
             E  ++ A E+F +  +  V+
Sbjct: 527 AYEGLVKEARELFAQLCSRGVV 548


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 7/353 (1%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK--RENSMINGSVIAVLIIHGFC 237
           M   G++ + + F   +   C  AK+   + + DE+ K   E  +I  S     II+G C
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYST----IINGLC 56

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K      A ++L ++  + CKP+ +AY  + +       V E      +  K G+ P   
Sbjct: 57  KMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVF 116

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFM 356
            Y   + G     R+ EA  L + +V      +      LI  +      S A + F  M
Sbjct: 117 TYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETM 176

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            EKG  P + T + L    C R++ DE  +++ ++       ++ SYN++++  C SGR+
Sbjct: 177 TEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRI 236

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA G++ EM  K L PD+  Y++LM   C+    + A++L  +M + G   NL TY+I+
Sbjct: 237 DEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIV 296

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +    + G ++ A  L   M E  + P+   YT L+EG+C    L+AA E+F+
Sbjct: 297 LDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFS 349



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 181/419 (43%), Gaps = 10/419 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL+ L S   I +A+K+FDEM   G E   I +   I   C   K+G     L  ++K
Sbjct: 14  NTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLC---KMGNTTMALQLLKK 70

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E      +V+A   II   CK + V EA     E+      PD   Y  +   F  +G 
Sbjct: 71  MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGR 130

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V E   + K+  +  V P    +   I GL  +R I EA  + E +       D    NA
Sbjct: 131 VNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNA 190

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ G  S      A   FN M  KG  P + + + L    CK  + DE   +   +S   
Sbjct: 191 LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y+ ++   C  GR +EA  +++EM   GL P++  Y+ +++  C+   L  A 
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAF 310

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L   M  S    N+  Y ILI      G++E A  LF N+  KG+ P   TYT ++ GL
Sbjct: 311 ELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
            +      A E+F +   +  +      +  +    R G    A +L+     +G S+D
Sbjct: 371 LKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 178/398 (44%), Gaps = 41/398 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           ++ G C   ++ +A K+ DE+     +PD I Y  +      MG+      +LKK  + G
Sbjct: 16  LLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P    Y   I  L  +R + EA +                                  
Sbjct: 76  CKPNVVAYNTIIDSLCKDRLVTEAMD---------------------------------- 101

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF+ M+++G  P + T S++    C   + +E   ++K +   +   +  ++ +++  LC
Sbjct: 102 FFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLC 161

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
               + EA+ V + M  KGL+PDV  YN+L++  C    +  A+KL++ M   GC+ N++
Sbjct: 162 KKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVR 221

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           +YNILI+   + G I+ A  L   M  K + PD  TY++L+ G CQ    Q A E+  + 
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
            ++ ++      S  +  LC+ GH   A +LL+ +       +   + IL++ +    ++
Sbjct: 282 CSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKL 341

Query: 590 EMAIE-----HIKWIQESSPTMLQEISAELFASLSSSS 622
           E A E      +K IQ +  T    IS  L   LS+ +
Sbjct: 342 EAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEA 379



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 193/433 (44%), Gaps = 13/433 (3%)

Query: 85  LSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++++++L  L S ++ ++A+    + VK+     D   Y  II  L +  NT  A  +  
Sbjct: 11  VTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMGNTTMALQLLK 69

Query: 144 EVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           ++    E+ G  P +   N+++  L  D  +  A+  F EM   G+      +   +  F
Sbjct: 70  KM----EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C   ++ +  S+  ++ +R  ++I   V   ++I G CK + + EA+ V + +  +  +P
Sbjct: 126 CNLGRVNEATSLFKQMVER--NVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y  + + +     + E + +     + G AP    Y   I G     RI EAK L 
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             +     T D    + L+     +  P+ A      M   G +P L T S +   LCK 
Sbjct: 244 AEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
              DE  E+ K +  +    ++  Y +++  +CT G+L  A  +   +  KG+ P V  Y
Sbjct: 304 GHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTY 363

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
             ++    +  L   A +L+ +M  +GC  N  TYN++I  F   G+   A+RL   M+ 
Sbjct: 364 TVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVG 423

Query: 499 KGVAPDATTYTSL 511
           KG + D++T+  L
Sbjct: 424 KGFSADSSTFRML 436



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M + G  PTL T + L   LC + K  + V+++  +    +  D+ +Y+ +++ LC  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              A  ++++M+ KG  P+V  YN+++++ C++ L+  A   + +M   G   ++ TY+ 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKS 531
           ++  F  +G +  A  LF  M+E+ V P+  T+T L++GLC++  +  A+ VF     K 
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  DV    +++  +    C R     A KL 
Sbjct: 181 LEPDVYTYNALVDGY----CSRSQMDEAQKLF 208



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 178/434 (41%), Gaps = 51/434 (11%)

Query: 56  INPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           + P L+T ++L  G  + A          +     H P  ++Y +I+  L          
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEI--CNSLL 161
            +LK+++      +   Y  II SL + +   +A   F+E VK   E I P++   +S+L
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK---EGIPPDVFTYSSIL 122

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL------------ 209
               + G ++ A  +F +M  R V  + + F + I   C+   + +              
Sbjct: 123 HGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182

Query: 210 ----------------SMLDEVRKRENSMI-NGSVIAV----LIIHGFCKGKRVEEAFKV 248
                           S +DE +K  N M   G    V    ++I+G CK  R++EA  +
Sbjct: 183 PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGL 242

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           L E+  +   PD   Y  +   F  +G   E + +LK+    G+ P    Y   + GL  
Sbjct: 243 LAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCK 302

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLST 367
              + EA EL + +   K   +  +   LI  + +     +A   F+ +  KG  PT+ T
Sbjct: 303 HGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVT 362

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + +   L K   S+E  E+++ ++ N    +  +YNV++     +G    A  +I+EM 
Sbjct: 363 YTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMV 422

Query: 428 RKGLDPDVSFYNSL 441
            KG   D S +  L
Sbjct: 423 GKGFSADSSTFRML 436



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M + GL P +  +N+L+   C +  +  A KL+D+M   G   ++ TY+ +I+   ++G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLARS 541
              AL+L   M EKG  P+   Y ++++ LC++  +  A + F++ V      DV    S
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 542 ILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
           IL  F    C  G    AT L + +   + + +  +  IL+  L   R +  A
Sbjct: 121 ILHGF----CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEA 169


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +P+   +P S  S L SL+   +I    ++L    V + +  +    F+  SL  G    
Sbjct: 71  EPSHAFTPASLAS-LHSLAARHRIPPPSALLLSKLVRRFSSPAEAAGFLRDSLASGAPAP 129

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
              S+FN               SLL  L   G +    ++F  M    V+   + +G+ +
Sbjct: 130 D-ISIFN---------------SLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILL 173

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C++  +G  L +LD +    + +     I   ++ G CK  R+++A   +DE R+R 
Sbjct: 174 NGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDE-RMRH 232

Query: 257 ---CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C P+ + Y  +A+ F  +G +     ++ +  K GVAP        I GL    R+ 
Sbjct: 233 VHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVG 292

Query: 314 EA----KELGEVIVSGKF-TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            A    +E   V    +   +    L +     +++D   A+  F+ M + G  P     
Sbjct: 293 AALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVD--MAMELFHEMADHGHRPDAVMY 350

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
             +   L +  +  +       +    +  D ++YN+++   C   +L EAY +++EMK 
Sbjct: 351 FTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKG 410

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            GL PDV  YN+L+   C+        +L   M   GC  ++ T+  L+  + + G+ + 
Sbjct: 411 VGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDE 470

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ALR+F +M E  + P+   Y +L++ LC+   +  A ++F++
Sbjct: 471 ALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDE 512



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 104/507 (20%), Positives = 194/507 (38%), Gaps = 49/507 (9%)

Query: 26  PARKWTPLLEQTLHQLGLRDSLSPS---LVARVINPYLLTHHSLALGFF--NWASQQPNF 80
           P+  +TP    +LH L  R  + P    L+++++  +  +  + A GF   + AS  P  
Sbjct: 72  PSHAFTPASLASLHSLAARHRIPPPSALLLSKLVRRF--SSPAEAAGFLRDSLASGAPAP 129

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
             S   ++S+L +L  +  +  +  +   ++   +  D   Y  ++  L +  +   A  
Sbjct: 130 DIS--IFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALK 187

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE------------------- 179
           V + +     D+ P+I   N+++  L   G +  A+   DE                   
Sbjct: 188 VLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLA 247

Query: 180 ------------------MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
                             M   GV  + I     I   C   ++G  L    E R     
Sbjct: 248 DAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPE 307

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
               +V    +   F     V+ A ++  E+     +PD + Y  +       G + +  
Sbjct: 308 ARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDAC 367

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
                 +K G       Y   I G   ++++ EA EL E +       D    N L+  +
Sbjct: 368 TTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGL 427

Query: 342 SSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                 SA+      MI+ G  P++ T   L    CK  K+DE + +++ +       + 
Sbjct: 428 CKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNT 487

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             YN ++ FLC S  +  A  +  EM+ K +  +V+ YN+L++    + +   A +L D+
Sbjct: 488 VIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDR 547

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIE 487
           M    C+ N  T ++L+    E+GE E
Sbjct: 548 MREERCTPNYVTVDVLMEWLPEIGETE 574


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 220/493 (44%), Gaps = 21/493 (4%)

Query: 64  HSLALGFFNWASQQPNFT--HSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITL--- 117
            +L L F NWA+    FT     ++ H + K  L  + QI A D   K +     +L   
Sbjct: 62  QALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFK 121

Query: 118 -----------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLA 165
                       SSV+  ++ S  +     KA S+ +  + +    G    N++L A + 
Sbjct: 122 SLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
           S   I  A  +F EM    V  +   + + I  FC    +   L++ D++  +    +  
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK--GCLPN 239

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            V    +I G+CK +++++ FK+L  + ++  +P+ I+Y +V       G + E   VL 
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI- 344
           +  + G +     Y   I G   E    +A  +   ++    T       +LI S+    
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           +   A+ F + M  +G  P   T + L     ++   +E   V + ++ N +   + +YN
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++  C +G++ +A  V+++MK KGL PDV  Y++++   CR   +  A ++  +M   
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +  TY+ LI  F E    + A  L+  ML  G+ PD  TYT+L+   C E +L+ A
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539

Query: 525 FEVFNKSVNHDVM 537
            ++ N+ V   V+
Sbjct: 540 LQLHNEMVEKGVL 552



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 233/551 (42%), Gaps = 38/551 (6%)

Query: 75  SQQPNFTHSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           +Q   F    LSY+++L  ++   R I+  ++V K++  ++++ +   Y  +I       
Sbjct: 160 AQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAG 219

Query: 134 NTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGY-----IDNALKMFDEMSHRGVE 186
           N   A ++F+  K   +   P +   N+L+     DGY     ID+  K+   M+ +G+E
Sbjct: 220 NIDVALTLFD--KMETKGCLPNVVTYNTLI-----DGYCKLRKIDDGFKLLRSMALKGLE 272

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            + I + V I   C   ++ +V  +L E+ +R  S+    V    +I G+CK     +A 
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL--DEVTYNTLIKGYCKEGNFHQAL 330

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            +  E+      P  I Y  +       G++      L + R  G+ P    Y   + G 
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             +  + EA  +   +    F+      NALI G   +     AI     M EKG  P +
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            + S +    C+    DE + V + +       D  +Y+ ++   C   R +EA  + +E
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M R GL PD   Y +L+ A C E  L  A +L ++M   G   ++ TY++LI+  ++   
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSR 570

Query: 486 IEGALRLFHNML-EKGVAPDATTYT--------------SLLEGLCQETNLQAAFEVFNK 530
              A RL   +  E+ V  D T +T              SL++G C +  +  A +VF  
Sbjct: 571 TREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFES 630

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSL---AD 585
            +  +     +  +  +   CR G    A  L + +  S  L H+ + + L+K+L     
Sbjct: 631 MLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK 690

Query: 586 AREVEMAIEHI 596
             E+   I H+
Sbjct: 691 VNELNSVIVHV 701


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 179/398 (44%), Gaps = 3/398 (0%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL+     +  +++A K+F+ M ++G   + + +   I   CE  ++ + +S+  ++R  
Sbjct: 254 SLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMR-- 311

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E+          +IIH      R  E   + +E+R R C+P+   Y ++ +       + 
Sbjct: 312 EDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLD 371

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E   +L +  + G+ P    Y   I G   E RI  A E+  ++ S     ++   N LI
Sbjct: 372 ESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELI 431

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G         A+   + M+E    P+L T ++L    CK    D   ++  +L  N   
Sbjct: 432 CGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLV 491

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  +Y+V +  LC S R+ EA  +   +K KG+  +   Y +L++  C+   +  A  L
Sbjct: 492 PDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISL 551

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            ++M +  C  N  TYN LI    + G+++  L +  NM + GV P   TYT L+E + +
Sbjct: 552 LERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLR 611

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           E +   A  VFN+ V+          + F+ + C  G+
Sbjct: 612 EGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGN 649



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 127/570 (22%), Positives = 249/570 (43%), Gaps = 42/570 (7%)

Query: 5   PATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHH 64
           P  DL++    +I+S      P  +  P  ++      L  +LSPS V+ + N +   + 
Sbjct: 51  PPDDLSSHHFLSILS-----HPKWQRHPSFQK------LIPNLSPSHVSSLFNNHPDLNP 99

Query: 65  SLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-- 121
           ++AL FFN     +P F H+  S+  +LK L      N +  V ++++++ I    SV  
Sbjct: 100 NIALQFFNSLPLIKPGFKHTVKSHSFLLKILI----PNNLFGVGEKIRISMIKACVSVDD 155

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
            RF++  L Q           N++KF    +     N LL +LA    ID   +++ EM 
Sbjct: 156 IRFLLDFLRQMNRDD------NDIKFK---LSVRSYNELLMMLARFLMIDEMKRVYTEML 206

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-RENSMINGSVIAVLIIHGFCKGK 240
           +  +  +       +  +   +K+G ++     V K  +  +   S     +I G+C+  
Sbjct: 207 NDMIVPNIYTLNTMVNAY---SKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNN 263

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            V  A+KV + +  + C+ + ++Y  +       G + E   + KK R+    P    Y 
Sbjct: 264 DVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYT 323

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMI 357
             I  L    R  E  +L   +       +      ++ ++     +D    I+  N M+
Sbjct: 324 VIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRIL--NEMM 381

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           EKG VP++ T + L +  C+  + +  +E+  ++ +N+   +  +YN ++        + 
Sbjct: 382 EKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVH 441

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  ++ +M    L P +  YNSL+   C+      A KL D +  +G   +  TY++ I
Sbjct: 442 KAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFI 501

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
               +   +E A  LF+++ EKG+  +   YT+L++G C+   +  A  +  +  + D +
Sbjct: 502 DTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCL 561

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLS 567
              S  ++ +  +C+ G      K+  GLS
Sbjct: 562 PNSSTYNSLIYGVCKEG------KVQEGLS 585



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 157/362 (43%), Gaps = 36/362 (9%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           ++E  +V  E+      P+      +   +  MG++ E  + + K  + G++P +  Y  
Sbjct: 195 IDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTS 254

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            ILG                     +  ++DV              SA   FN M  KG 
Sbjct: 255 LILG---------------------YCRNNDV-------------NSAYKVFNMMPNKGC 280

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
                + + +   LC+  + DE + ++K +  +D +  + +Y V++  L  + R  E   
Sbjct: 281 RRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMD 340

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  EM+ +  +P+V  Y  +++A C+E  L  ++++ ++M   G   ++ TYN LI  + 
Sbjct: 341 LFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYC 400

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           E G IE AL +   M      P+  TY  L+ G  +  ++  A  + +K +   +  +  
Sbjct: 401 EEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLV 460

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWI 599
             ++ +   C+ GHF  A KLL  L  +    D  ++ + + +L  ++ +E A +    +
Sbjct: 461 TYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL 520

Query: 600 QE 601
           +E
Sbjct: 521 KE 522



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/474 (20%), Positives = 187/474 (39%), Gaps = 42/474 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q   +    +Y S++     +  +N+   V   +       +   Y  II  L +     
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRID 301

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN--ALKMFDEMSHRGVEFSTIGFGV 194
           +  S+F +++   +D  P +    + + A  G   N   + +F+EM  R  E +   + V
Sbjct: 302 EGISLFKKMRE--DDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTV 359

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +   C+  KL +   +L+E+   E  ++   V    +I G+C+  R+E A ++L  +  
Sbjct: 360 MVDAMCKERKLDESRRILNEMM--EKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMES 417

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
             C+P+   Y  +   F     V +   +L K  +  + P    Y   I           
Sbjct: 418 NNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDS 477

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A +L +++       D    +  I ++  S     A   FN + EKG        + L  
Sbjct: 478 AYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALID 537

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK  K DE + + + + + D   +  +YN ++  +C  G+++E   +++ M + G+ P
Sbjct: 538 GHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKP 597

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASG----------------CSGNLK------ 471
            V+ Y  L+E   RE     A ++++QM + G                 SGN+K      
Sbjct: 598 TVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMM 657

Query: 472 -------------TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
                        TY +LIS +  +G    A  +   ML+ G  P    + +L+
Sbjct: 658 ARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 27/245 (11%)

Query: 334 LNALIGSVSSIDPRSAIVFFNFM--IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           +++L  +   ++P  A+ FFN +  I+ G   T+ + S L                 K+L
Sbjct: 87  VSSLFNNHPDLNPNIALQFFNSLPLIKPGFKHTVKSHSFL----------------LKIL 130

Query: 392 SANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSF------YNSLMEA 444
             N+ F   E   + +   C S   +R     +++M R   D D+ F      YN L+  
Sbjct: 131 IPNNLFGVGEKIRISMIKACVSVDDIRFLLDFLRQMNRD--DNDIKFKLSVRSYNELLMM 188

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             R  ++   K+++ +M       N+ T N +++ +S++G I  A      + + G++PD
Sbjct: 189 LARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPD 248

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           + TYTSL+ G C+  ++ +A++VFN   N          +T +  LC  G       L +
Sbjct: 249 SFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFK 308

Query: 565 GLSSD 569
            +  D
Sbjct: 309 KMRED 313


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 199/462 (43%), Gaps = 52/462 (11%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  D AL M   M+  G    T+ +   I   C    + +  ++LDE+       + G  
Sbjct: 186 GRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEM------FLMGCS 239

Query: 228 IAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             V     I+HG C   R+ EA +++D + IR C P+ I Y  + +   L   V E   +
Sbjct: 240 ADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTM 299

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L +  +L V      +   I   +++ ++ EA EL E + S     D    + LI  +  
Sbjct: 300 LGRVPELNVVL----FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCK 355

Query: 344 IDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           +    SA+     M +KG  P++ T + L  + C+    D +  + +V+S      ++E 
Sbjct: 356 LGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEG 415

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL----- 457
           YN M+  +C   R+ +A   +QEMK +G  PD+  YN+++   C  + +  A+ L     
Sbjct: 416 YNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLL 475

Query: 458 -----------------------W-------DQMFASGCSGNLKTYNILISKFSEVGEIE 487
                                  W       + M   GCS ++ +YN LI      G ++
Sbjct: 476 HEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVD 535

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            ++ L   M EKG+ P+  +Y  L+  LC+   ++ A E+  + +N ++       +T +
Sbjct: 536 RSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLI 595

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
             LC+ G    A  LL  L ++  H+D  ++ IL+     AR
Sbjct: 596 NGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKAR 637



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 190/455 (41%), Gaps = 31/455 (6%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           P +  SLL  L        AL + D++ HR  V  S   +   +  F        VLS+ 
Sbjct: 100 PPLRESLLIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLY 159

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
             +  R+         ++      C+  R +EA  +L  +    C PD + Y+ V     
Sbjct: 160 RRMVHRDRVPPTTFTFSI-AARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALC 218

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E   +L +   +G +   N + + + GL    R+ EA  L +     +  I   
Sbjct: 219 AQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVD-----RMMIRGC 273

Query: 333 VLNALIGS--VSSIDPRSAIVFFNFMIEKGRVPTLS-TLSNLSKNLCKRN-KSDELVEVY 388
           V NA+     +  +   S +     M+  GRVP L+  L N     C  + K  E  E+Y
Sbjct: 274 VPNAITYGFLLKGLCLASQVEEARTML--GRVPELNVVLFNTVIGRCLLDGKLKEAAELY 331

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + + +     D  +Y++++  LC  GRL  A  +++EM+ KG  P +  Y  L+ + CR 
Sbjct: 332 ETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRN 391

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            +    + + + M   G S NL+ YN +I    +   ++ A+R    M  +G  PD  TY
Sbjct: 392 GMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTY 451

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----L 563
            +++  LC    ++ A  +F   ++  V+      +T + +L R G +  A  L     L
Sbjct: 452 NTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVL 511

Query: 564 RGLSSDL-------------GHSDSHVILLKSLAD 585
            G S D+             G+ D  ++LL  +A+
Sbjct: 512 HGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAE 546



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/462 (20%), Positives = 188/462 (40%), Gaps = 30/462 (6%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           ++L+ +  +    D+ +Y+ +I +L       +A ++ +E+            N ++  L
Sbjct: 193 TMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGL 252

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
            + G +  A ++ D M  RG   + I +G  +   C  +++ +  +ML  V +    + N
Sbjct: 253 CTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFN 312

Query: 225 GSVIAVLI-----------------------------IHGFCKGKRVEEAFKVLDELRIR 255
             +   L+                             IHG CK  R+  A K+L E+  +
Sbjct: 313 TVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDK 372

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P  + Y I+   F   G       +L+     G++     Y   I  +  +RR+ +A
Sbjct: 373 GFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDA 432

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
               + + S  +  D    N +I  + + +    A   F  ++ +G V    T + L   
Sbjct: 433 MRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHA 492

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L +     + + +   +  +    D+ SYN ++  LC  G +  +  ++ EM  KG+ P+
Sbjct: 493 LLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPN 552

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN L+   C+   +R A +L  +M     + ++ TYN LI+   ++G +  AL L  
Sbjct: 553 NVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLE 612

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            +  + V  D  TY  L+   C+   L  A  + N++V   +
Sbjct: 613 KLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGI 654



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/447 (21%), Positives = 192/447 (42%), Gaps = 64/447 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++Y  +LK L L+ Q+    ++L +V ++N +  ++ + R     L+ GK  ++A  ++ 
Sbjct: 278 ITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGR----CLLDGK-LKEAAELY- 331

Query: 144 EVKFNCEDIGPEICNS-------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
                 E +G + C         L+  L   G + +A+K+  EM  +G   S + + + +
Sbjct: 332 ------ETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILL 385

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
             FC N     + +ML+ +  +  SM     NG + AV      CK +R+++A + + E+
Sbjct: 386 HSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAV------CKDRRMDDAMRFMQEM 439

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           + +  KPD   Y  +         + E E + +     GV      Y   I  L+     
Sbjct: 440 KSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSW 499

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
            +A  L   +V    ++D                   IV +N +I               
Sbjct: 500 QDAISLANDMVLHGCSLD-------------------IVSYNGLI--------------- 525

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           K LC+    D  + +   ++      +  SYN+++S LC + R+R+A  + +EM  + L 
Sbjct: 526 KALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELT 585

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD+  YN+L+   C+   +  A  L +++       ++ TYNILIS   +   +  A  L
Sbjct: 586 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASML 645

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQET 519
            +  +  G+ P+  T+  +++   +++
Sbjct: 646 LNRAVTSGITPNERTWGIMVQNFVRKS 672



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 126/269 (46%), Gaps = 8/269 (2%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI    S+ P  A+   + +  +  V P+  + + +     + +   +++ +Y+ +   D
Sbjct: 107 LIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRD 166

Query: 396 YFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                  ++++    LC  GR  EA  +++ M R G  PD   Y +++ A C +  +  A
Sbjct: 167 RVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEA 226

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L D+MF  GCS ++ T+N ++     +G +  A RL   M+ +G  P+A TY  LL+G
Sbjct: 227 ATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKG 286

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC  + ++ A  +  +    +V+L  +++   ++     G    A +L   + S     D
Sbjct: 287 LCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLD----GKLKEAAELYETMGSKGCPPD 342

Query: 575 SHV--ILLKSLADAREVEMAIEHIKWIQE 601
           +H   IL+  L     +  A++ ++ +++
Sbjct: 343 AHTYSILIHGLCKLGRLGSAMKLLREMED 371


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 209/485 (43%), Gaps = 38/485 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++I+  L  ++ I+  + V +Q+    +  D+  Y  II  L + ++  +A  VF +
Sbjct: 331 VTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQ 390

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            N L+    S G  +  ++   EMS   +E     +G+ +   C+N K
Sbjct: 391 MIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGK 450

Query: 205 LGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
             +  S+ D + ++    I  SV I  +++HG+ K   + E   +L+ +      P+   
Sbjct: 451 CNEARSLFDSMIRKG---IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  V   +     + E   +  K ++ G++P    Y   I  L          +LG V  
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC---------KLGRV-- 556

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                 DD VL                  FN MI +G  P     ++L   LC  +K ++
Sbjct: 557 ------DDAVLQ-----------------FNQMINEGVTPNNVVFNSLVYGLCTVDKWEK 593

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
           + E++  +       D+  +N ++  LC  GR+ EA  +I  M   GL PDV  YN+L++
Sbjct: 594 VEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLID 653

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C    +  A KL D M ++G   N+ +YN L+  + + G I+ A  LF  ML KGV P
Sbjct: 654 GHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              TY ++L GL +      A E++   +    + +    S  +   C+   F  A K+ 
Sbjct: 714 GVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIF 773

Query: 564 RGLSS 568
           + L S
Sbjct: 774 QSLCS 778



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 192/445 (43%), Gaps = 18/445 (4%)

Query: 138 AFSVFNEVKFNCED-IGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           A S FN +  +C + + P+ C    ++      G ++     F  +   G     I    
Sbjct: 65  AVSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQ 124

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL- 252
            +   C+  ++G+ + +L  +R+         V++   ++ G C  +R EEA ++L  + 
Sbjct: 125 LLKGLCDTKRVGEAMHVL--LRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMV 182

Query: 253 --RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
             +   C PD ++Y IV   F   G V +   +     ++GV+P    Y   I GL   +
Sbjct: 183 DGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQ 239

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            +  A+++ + +V      ++   N +I G   + +   A   F  M++KG  P+  T +
Sbjct: 240 EVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYN 299

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            +   LCK    D    V++ +       D  +YN ++  LC +  + +A GV Q+M  K
Sbjct: 300 TIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK 359

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ PD   Y  +++  C+   +  A+ ++ QM   G   N  TYN LI  +   G+ E  
Sbjct: 360 GVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEV 419

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           ++    M    + PD  TY  LL+ LC+      A  +F+  +   +  + +I    +  
Sbjct: 420 VQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHG 479

Query: 550 LCRRG-----HFLVATKLLRGLSSD 569
             ++G     H L+   +  G+S +
Sbjct: 480 YGKKGALSEMHDLLNLMVANGISPN 504


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 227/521 (43%), Gaps = 24/521 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFI 125
           AL  FN   ++  F H+ L+Y  +++ L    + +A++ VL ++++N   +L   VY   
Sbjct: 23  ALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVSA 82

Query: 126 IPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSH 182
           + +  +    Q+A  VF  + F NCE   P I   N+++ +L   GY + A K++  M H
Sbjct: 83  MRNYGRKGKVQEAVDVFERMDFYNCE---PSIFSYNAIMNILVEYGYFNQAHKVYLRMKH 139

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
            G+      F + I  FC   +    L +L+ +  +   +   +V+   +I GF +    
Sbjct: 140 EGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCEL--NAVVYCTVISGFYEENYQ 197

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA+++ +++      P    +  +       G + E E +L K  K GV P    +  F
Sbjct: 198 VEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 303 ILGLI-------VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
           I GL           ++ EA+     +V+     DD   N +I   S +   + A     
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
               KG VP   T  +L   +C+    D  + +++          +  YN ++  L   G
Sbjct: 318 DAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG 377

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            + +A  ++ +M ++G+ PD+  YN ++   C+   +  A  L +   A G   ++ T+N
Sbjct: 378 LVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFN 437

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  + +  +++ A+ +  +M   GV PD  TY S+L GLC+    +   E F K +  
Sbjct: 438 TLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETF-KMIME 496

Query: 535 DVMLARSILSTFMI-SLCRRGHFLVATKLL-----RGLSSD 569
              L   I    +I SLC+      A  LL     RGL  D
Sbjct: 497 KGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/514 (21%), Positives = 221/514 (42%), Gaps = 52/514 (10%)

Query: 69  GFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           G+FN A +               ++   +KS   +++  A   +L  +      L++ VY
Sbjct: 125 GYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVY 184

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM 180
             +I    +     +A+ +FN  K     I P I   N L+ +L   G++    K+ +++
Sbjct: 185 CTVISGFYEENYQVEAYELFN--KMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKV 242

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-----IAVLIIHG 235
              GV  +   F +FI   C    L    S + E     + M+N  +         II+G
Sbjct: 243 LKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYG 302

Query: 236 FCKGKRVEEAFKVLDELRIR--------EC---------------------------KPD 260
           + K  ++++A ++L + + +         C                           KP 
Sbjct: 303 YSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPS 362

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  + +     G V +   ++    K G++P    Y   I GL     + +A  L  
Sbjct: 363 IVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLN 422

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
             ++  +  D    N LI G    +   +AI   + M   G  P + T +++   LCK  
Sbjct: 423 AAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAA 482

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++++E +K++       ++ +YN+++  LC + ++ EA  +++E++ +GL PD   + 
Sbjct: 483 KPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFG 542

Query: 440 SLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           +++   C    L  A +L+ +M         + TYNI+I+ FSE  +++ A +LFH M +
Sbjct: 543 TVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGD 602

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           KG  PD+ TY  +++G C+  N+ + ++   K +
Sbjct: 603 KGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEI 636



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 154/388 (39%), Gaps = 41/388 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+   S   +I     +LK  K      D   Y  +I  + Q  +   A ++F E
Sbjct: 294 FTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEE 353

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
                + + P I   N+L+  L+  G +  AL++ ++MS  G+      + + I   C+ 
Sbjct: 354 AL--GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKM 411

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING--------SVIAVL--------------- 231
             +    ++L+    +         N++I+G        + I +L               
Sbjct: 412 GCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITY 471

Query: 232 --IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             I++G CK  + E+  +    +  + C P+ I Y I+ E       V E   +L++ R 
Sbjct: 472 NSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRN 531

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV--LNALIGSVS-SIDP 346
            G+ P    +   I G      + EA +L   +   ++ I   V   N +I + S  +D 
Sbjct: 532 RGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRM-EQQYRICHTVATYNIMINAFSEKLDM 590

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A   F+ M +KG  P   T   +    CK    +   +         +   + ++  +
Sbjct: 591 DMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRV 650

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           ++ LC   R+ EA G++  M R G+ P+
Sbjct: 651 INCLCVQHRVHEAVGIVHLMVRTGVVPE 678


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 200/467 (42%), Gaps = 41/467 (8%)

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLA---SDGYIDNALKMFDEMSHRGVEFSTIGF 192
            +A  +FN +K          CN+LL  L    S   I  +  +F +    GV+ +T  F
Sbjct: 141 HQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSF 200

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            + I   C   + G+ + +L ++R  +      ++    I+ G CK  R+ EA  +L ++
Sbjct: 201 NILIHGSCMENRFGEAIRVLGKMR--DYGCPPDNITYNTILDGLCKKGRLNEARDLLLDM 258

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           + +   P+   + I+      +G + E   V++   +  V P    Y   I G   + RI
Sbjct: 259 KNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRI 318

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA  L E + + K + D    N LI G                M  +G  P   T + +
Sbjct: 319 AEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVM 378

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            K   K+ K DE+ +  + +  +    D+ +YN ++S+ C  G++ EA+ ++ EM RKGL
Sbjct: 379 VKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGL 438

Query: 432 DPDVSFYNSLMEACCRE-------DLLRPAKK---------------------------- 456
             D    N+++ A CRE       DLL  A++                            
Sbjct: 439 KMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALR 498

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           LWD+M       ++ TYN +I+   ++G+   A+     +LE G+ PD  TY +++ G C
Sbjct: 499 LWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYC 558

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           QE  ++ AF+  NK V  +        +T +  LC+ G    A KL 
Sbjct: 559 QEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLF 605



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 199/449 (44%), Gaps = 9/449 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N++L  L   G ++ A  +  +M ++G+  +   F + +   C    L +  ++++ +  
Sbjct: 236 NTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMS- 294

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +NS++  +    ++I GFCK  R+ EA ++ +E+   +  PD + Y  +       GS 
Sbjct: 295 -QNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSS 353

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++++    G+ P +  Y   +   + + ++ E  +    +       D    N L
Sbjct: 354 EEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTL 413

Query: 338 IG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I     V  +D   A    + M  KG      TL+ + + LC+  K DE  ++       
Sbjct: 414 ISWHCKVGKMD--EAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRR 471

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            YF D  SY  ++       +  +A  +  EMK K + P +  YNS++   C+      A
Sbjct: 472 GYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQA 531

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
               D++  SG   +  TYN +I  + + G++E A +  + M+EK   PD  T  +LL G
Sbjct: 532 IDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCG 591

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC+E  L+ A ++FN  ++    +     +T ++SLC+   F  A  LL  +       D
Sbjct: 592 LCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD 651

Query: 575 SHVI--LLKSLADAREVEMAIEHIKWIQE 601
            +    +L  L DA  ++ A E I  I E
Sbjct: 652 CYTYNAILGGLTDAGRMKDAEEFISKIAE 680



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 289 KLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
           K+GV   TN +   I G  +E R  EA + LG++   G    D+   N ++ G       
Sbjct: 190 KIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYG-CPPDNITYNTILDGLCKKGRL 248

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A      M  KG  P  +T + L    C+     E   V +++S N    D  +YNVM
Sbjct: 249 NEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVM 308

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S  C  GR+ EA  + +EM+   L PDV  YN+L+  C          KL ++M   G 
Sbjct: 309 ISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM 368

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  TYN+++  F + G+++   +    M E G  PD  TY +L+   C+   +  AF 
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFR 428

Query: 527 VFNKSVNHDVMLARSILSTFMISLCR-----RGHFLVATKLLRGLSSD 569
           + ++     + +    L+T + +LCR       H L+ +   RG   D
Sbjct: 429 LMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVD 476



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 108/258 (41%), Gaps = 48/258 (18%)

Query: 329 IDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL------------ 375
           I   +L+  IG+ V+   P  A   FN M   G  PTL T + L   L            
Sbjct: 122 ISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLS 181

Query: 376 --------------------------CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                                     C  N+  E + V   +       D  +YN ++  
Sbjct: 182 KAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDG 241

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GRL EA  ++ +MK KGL P+ + +N L+  CCR   L+ A  + + M  +    +
Sbjct: 242 LCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPD 301

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TYN++IS F + G I  A+RL   M    ++PD  TY +L+ G  +  + +  F++  
Sbjct: 302 AWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIE 361

Query: 530 K---------SVNHDVML 538
           +         SV ++VM+
Sbjct: 362 EMEGRGMKPNSVTYNVMV 379



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR---EDLLRPAKKLWDQ 460
           ++ +      GR  +A  +   MKR G+ P +   N+L+ A  R      +R +K ++  
Sbjct: 128 DISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTD 187

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
               G   N  ++NILI           A+R+   M + G  PD  TY ++L+GLC++  
Sbjct: 188 FIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGR 247

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           L  A ++     N  +   R+  +  ++  CR G    A  ++  +S +
Sbjct: 248 LNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQN 296



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 15/172 (8%)

Query: 61  LTHHSLALGFFNW--ASQ---------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ 109
           +++ +L +G+F    ASQ         +     S ++Y+S++  L    + N     L +
Sbjct: 478 VSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDE 537

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASD 167
           +  + +  D   Y  II    Q    +KAF   N  K   ++  P++  CN+LL  L  +
Sbjct: 538 LLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHN--KMVEKNFKPDVVTCNTLLCGLCKE 595

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           G ++ ALK+F+    +G +   + +   I   C+  + G+   +L+E+ +++
Sbjct: 596 GMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKK 647


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 219/490 (44%), Gaps = 15/490 (3%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F   +Q  ++    LS++S+++S + S    +++ VL Q+K  +       +  +  +  
Sbjct: 48  FKSGTQMGSYKLGDLSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKAYG 107

Query: 131 QGKNTQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM---SHRGV 185
           +    +KA  +F+ +  +F C+       NS+L V+  +G  + AL+ ++ +       +
Sbjct: 108 KAHLPEKAVDLFHRMWGEFQCKQTVKSF-NSVLNVIVQEGLFNRALEFYNHVVASKSLNI 166

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
             + + F + I   C    + + + +  E+  R  +  N +     ++HG CK +R++EA
Sbjct: 167 HPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYST--LMHGLCKEERIDEA 224

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             +LDE+++    P+ +A+ ++       G +     ++      G  P    Y   + G
Sbjct: 225 VSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHG 284

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPT 364
           L ++ ++ +A  L   +VS K   +D     LI G V              +  +G    
Sbjct: 285 LCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGN 344

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
               S+L   LCK  K ++ +E++K +       +   Y+ ++  LC  G+L EA G + 
Sbjct: 345 EYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLS 404

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EMK KG  P+   Y+SLM           A  +W +M  + C  N   Y+ILI+   + G
Sbjct: 405 EMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDG 464

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS------VNHDVML 538
           +   AL ++  ML +G+  D   Y+S++ G C    ++   ++FN+       V  DV+ 
Sbjct: 465 KFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVIT 524

Query: 539 ARSILSTFMI 548
              +L+ F I
Sbjct: 525 YNILLNAFCI 534



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 205/445 (46%), Gaps = 16/445 (3%)

Query: 86  SYHSILKSLS----LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S++S+L  +      +R +   + V+    +N I  ++  +  +I ++ +     KA  V
Sbjct: 134 SFNSVLNVIVQEGLFNRALEFYNHVVASKSLN-IHPNALTFNLVIKAMCRLGLVDKAIEV 192

Query: 142 FNEVKF-NCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           F E+   NC    P+    ++L+  L  +  ID A+ + DEM   G   + + F V I  
Sbjct: 193 FREIPLRNC---APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISA 249

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+   LG+   ++D +  +    +   V    ++HG C   ++E+A  +L+++   +C 
Sbjct: 250 LCKKGDLGRAAKLVDNMFLK--GCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCV 307

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+ + +  +   F + G   +   VL      G       Y   I GL  E +  +A EL
Sbjct: 308 PNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMEL 367

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +V      +  V +ALI G         A  F + M  KG +P   T S+L +   +
Sbjct: 368 WKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFE 427

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
              S + + V+K ++ N+   +   Y+++++ LC  G+  EA  V ++M  +G+  DV  
Sbjct: 428 AGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVA 487

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           Y+S++   C  +L+    KL++QM   G     ++ TYNIL++ F     I  A+ + + 
Sbjct: 488 YSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNI 547

Query: 496 MLEKGVAPDATTYTSLLEGLCQETN 520
           ML++G  PD  T    L+ L +  N
Sbjct: 548 MLDQGCDPDFITCDIFLKTLRENMN 572



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T S L   LCK  + DE V +   +     F ++ ++NV++S LC  G L  A  +
Sbjct: 203 PDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKL 262

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +  M  KG  P+   YN+L+   C +  L  A  L +QM ++ C  N  T+  LI+ F  
Sbjct: 263 VDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVM 322

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G      R+  ++  +G   +   Y+SL+ GLC+E     A E++ + V         +
Sbjct: 323 QGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIV 382

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAI 593
            S  +  LCR G    A   L  + +   L +S ++  L++   +A +   AI
Sbjct: 383 YSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAI 435


>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
          Length = 1295

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/458 (22%), Positives = 215/458 (46%), Gaps = 14/458 (3%)

Query: 104  DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN-SLLA 162
            D++L  ++   I +D  +  F++  L++G     A S+F+++K +C    P +C+ S+L 
Sbjct: 815  DALLTYIQAKNIGVDRRLCNFLLKCLVEGNQIMYARSLFDDMK-SCGP-SPNVCSYSILM 872

Query: 163  VLASDG---YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
             + + G    ++ A ++  EM   GV  +   +G +++  C + ++      L  + +  
Sbjct: 873  SMYTHGERSCLEEAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSG 932

Query: 220  NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                N    AV  IHGFC   +V++A +V   ++     PD  +Y I+ +     G + +
Sbjct: 933  GPCSNYCFNAV--IHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLK 990

Query: 280  REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
               +L++  + G+ P    Y   + GL    ++  A ++ + +    F  + D +N  I 
Sbjct: 991  GYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGF--EHDQINYSII 1048

Query: 339  --GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
              G    +D ++    +  MI     P +   ++L   LC+     + + V++++  N  
Sbjct: 1049 LHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGL 1108

Query: 397  FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ +  ++V      G + EA+  +  M +  G+ P++  Y  ++   C+ +      
Sbjct: 1109 SPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVW 1168

Query: 456  KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             ++  M   G   ++  Y+I+I  F +  +++ ALRL+H ML++GV P+  TY+SL+ GL
Sbjct: 1169 NVFADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGL 1228

Query: 516  CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
            C +  L  A  +    +  D++L   + ++ +   CRR
Sbjct: 1229 CNDDRLPEAMGLIRDMIGEDLLLDNVLYTSIIACYCRR 1266



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 384  LVEVYKVLSANDYFTDMES---------YNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432
            LVE  +++ A   F DM+S         Y++++S      R  L EA+ ++ EM+  G+ 
Sbjct: 840  LVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEMESNGVR 899

Query: 433  PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            P+ + Y + +   CR   +  A      +  SG   +   +N +I  F   G+++ A+ +
Sbjct: 900  PNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEV 959

Query: 493  FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            FH M + G  PD  +Y+ L++GLC++ +L   +++  +   + +   +   S+ +  LC+
Sbjct: 960  FHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCK 1019

Query: 553  RGHFLVATKLLRGL 566
             G   +A K+ + L
Sbjct: 1020 TGQVALALKIFKNL 1033


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 207/461 (44%), Gaps = 5/461 (1%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           +D+ V+  +I S +Q +   +    F  ++     +    CNSLL  L   G++D A ++
Sbjct: 113 VDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEV 172

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           ++E++  G+E +     + +   C++ K+  V   L ++ ++   +    V    +I+ +
Sbjct: 173 YNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQK--GIFADIVTYNTLINAY 230

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+   + EAF+V++ +  +  KP    Y  V       G     + V  +   +G++P T
Sbjct: 231 CREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFN 354
             Y   ++         EAK++   ++    + D    ++LIG VSS +     A+++F 
Sbjct: 291 TTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIG-VSSRNGHLDQALMYFR 349

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M   G VP     + L    C+     E +E+   +       D+ +YN +++ LC   
Sbjct: 350 DMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKK 409

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L +A  +  EM  +G+ PD   + +L+   C+E  +  A  L+  M       ++ TYN
Sbjct: 410 LLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYN 469

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ILI  F +  E+E A  L++ M+ + + P+  +Y  L+ G C    +  AF ++++ +  
Sbjct: 470 ILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            +       +T +   CR G    A + L  + S+    DS
Sbjct: 530 GIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDS 570



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 179/426 (42%), Gaps = 36/426 (8%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +     +A  VFNE+            N+LL     +     A  +F +M 
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDML 317

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
           HRGV    I F   I     N  L Q L    +++   + ++  +VI  ++I+G+C+   
Sbjct: 318 HRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT--SGLVPDNVIYTILINGYCRNGM 375

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           + EA ++ D++  + C  D +AY  +         + +   +  +  + GV P    +  
Sbjct: 376 MSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTT 435

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            I G       C+   +G+                            A+  F  M +K  
Sbjct: 436 LIHGH------CKEGNMGK----------------------------ALSLFGIMTQKNI 461

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + L    CK  + ++  E++  + +   F +  SY ++V+  C  G + EA+ 
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFR 521

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  EM RKG+ P +   N++++  CR   L  A +   +M + G   +  TYN LI+ F 
Sbjct: 522 LWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +   ++ A  L + M  KG+ PD  TY  +L G C++  +Q A  +  K +   +   RS
Sbjct: 582 KGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRS 641

Query: 542 ILSTFM 547
             +T +
Sbjct: 642 TYTTLI 647



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 213/524 (40%), Gaps = 50/524 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L +  +++S   +R++N      K ++     +  +    ++  L++      A+ V+NE
Sbjct: 116 LVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNE 175

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  +  ++     N ++  L  D  ID+      +M  +G+    + +   I  +C    
Sbjct: 176 IARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGL 235

Query: 205 LGQVLSMLDEVRKRE--------NSMING--------------------------SVIAV 230
           LG+   +++ +  +         N++ING                          +    
Sbjct: 236 LGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           L++   C+     EA  +  ++  R   PD I++  +       G + +  +  +  +  
Sbjct: 296 LLVES-CRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTS 354

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNALIGSVSSIDP 346
           G+ P    Y   I G      + EA E+ + ++     +D    + +LN L       D 
Sbjct: 355 GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLAD- 413

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A   F+ M+E+G VP   T + L    CK     + + ++ +++  +   D+ +YN++
Sbjct: 414 --ANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C +  + +A  +  EM  + + P+   Y  L+   C    +  A +LWD+M   G 
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              L T N +I  +   G++  A      M+ +GV PD+ TY +L+ G  +   +  AF 
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFF 591

Query: 527 VFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + N    K +  DV+    IL+ F    CR+G    A  +LR +
Sbjct: 592 LINKMETKGLQPDVVTYNVILNGF----CRQGRMQEAELILRKM 631



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 192/424 (45%), Gaps = 9/424 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++  L    +      V  ++    ++ D++ Y  ++    +  N  +A  +F++
Sbjct: 256 FTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSD 315

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      + P++ +  SL+ V + +G++D AL  F +M   G+    + + + I  +C N
Sbjct: 316 MLH--RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             + + L + D++ ++  ++    V+A   I++G CK K + +A  + DE+  R   PDF
Sbjct: 374 GMMSEALEIRDKMLEQGCAL---DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDF 430

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             +  +       G++ +   +     +  + P    Y   I G      + +A EL   
Sbjct: 431 CTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNE 490

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++S K   +      L+    ++   S A   ++ MI KG  PTL T + + K  C+   
Sbjct: 491 MISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGD 550

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             +  E    + +     D  +YN +++       + +A+ +I +M+ KGL PDV  YN 
Sbjct: 551 LSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNV 610

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++   CR+  ++ A+ +  +M   G   +  TY  LI+ +     ++ A R    ML++G
Sbjct: 611 ILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRG 670

Query: 501 VAPD 504
             PD
Sbjct: 671 FVPD 674



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 134/279 (48%), Gaps = 4/279 (1%)

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFT--IDDDVLNALIGS-VSSIDPRSA 349
           + R +D +  IL +I  R      E+ E ++S   T  +D+ V + LI S V +      
Sbjct: 76  SKRLSDAQTLILRMI-RRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEG 134

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F  +  KG + +++  ++L   L K    D   EVY  ++ +    ++ + N+MV+ 
Sbjct: 135 TDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNA 194

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC   ++ +    + +M++KG+  D+  YN+L+ A CRE LL  A ++ + M   G    
Sbjct: 195 LCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPT 254

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           L TYN +I+   + G    A  +F+ ML  G++PD TTY +LL   C+  N   A ++F+
Sbjct: 255 LFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFS 314

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             ++  V       S+ +    R GH   A    R + +
Sbjct: 315 DMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT 353



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--LASDGYIDN 172
           I  D   Y  +I    +    +KA  ++NE+      I P   +  + V    + G++  
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMI--SRKIFPNHISYAILVNGYCNLGFVSE 518

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A +++DEM  +G++ + +     I  +C +  L +    L ++      +   S+    +
Sbjct: 519 AFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISE--GVGPDSITYNTL 576

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I+GF KG+ +++AF +++++  +  +PD + Y ++   F   G + E E++L+K  + G+
Sbjct: 577 INGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGI 636

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            P  + Y   I G + +  + EA    + ++   F  DDD
Sbjct: 637 DPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDD 676


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 218/507 (42%), Gaps = 16/507 (3%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  L  L LR SL PSLV  V+         +AL FF WA +Q  ++H PL Y++
Sbjct: 146 WNPNFEGRLRHL-LR-SLKPSLVCAVLRSQ--ADERVALNFFYWADRQWRYSHHPLVYYT 201

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS ++       VL+ +    I L    +  ++ S  +    + A  V   ++   
Sbjct: 202 LLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAG 261

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL     ++ AL+  + M   G++   + +   I  +C+   L ++ 
Sbjct: 262 VEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCD---LNRIE 318

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECK--PDFIAYRI 266
             L+ +    +       ++   + GF CK K++E+  K L E  +++    PD + Y  
Sbjct: 319 DALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQV-KCLMEKMVQDSNLIPDQVTYNT 377

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G   +    LK+    G       Y   +     + R+ EAK L   + S  
Sbjct: 378 LIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRS 437

Query: 327 FTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              D     A++     +  ID   A      M + G  P   + + L   LC   KS E
Sbjct: 438 CNPDVVTYTAIVDGFCRLGRID--EAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLE 495

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             E+  V   + +  +  +Y V++      G+L EA  + +EM  KG  P     N L++
Sbjct: 496 AREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQ 555

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           + C+   +  AKK  ++    GC+ N+  +  +I  F ++G++E AL +  +M      P
Sbjct: 556 SLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHP 615

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK 530
           DA TYT+L + L ++  L  A E+  K
Sbjct: 616 DAVTYTALFDALGKKGRLDEAAELIVK 642



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 190/450 (42%), Gaps = 12/450 (2%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLS 210
           P +  +LL VL+       A ++   M+ RG+E S   FG  +  +    KL    +VL+
Sbjct: 196 PLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLT 255

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           ++ +     N  I  + I VL+     KG ++E+A + L+ +++   KPD + Y  + + 
Sbjct: 256 LMQKAGVEPNLSICNTTIYVLV-----KGCKLEKALRFLERMQVTGIKPDIVTYNSLIKG 310

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +  + +   ++      G  P    Y   +  L  E++I + K L E +V     I 
Sbjct: 311 YCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIP 370

Query: 331 DDV-LNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D V  N LI  +S       A+ F     +KG        S +  + C++ + DE   + 
Sbjct: 371 DQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLV 430

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     D+ +Y  +V   C  GR+ EA  ++Q+M + G  P+   Y +L+   C  
Sbjct: 431 IDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHS 490

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                A+++ +       + N  TY +++  F   G++  A  L   M+EKG  P     
Sbjct: 491 GKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEI 550

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             L++ LCQ   +  A +   + +N    +     +T +   C+ G    A  +L  +  
Sbjct: 551 NLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYL 610

Query: 569 DLGHSD--SHVILLKSLADAREVEMAIEHI 596
              H D  ++  L  +L     ++ A E I
Sbjct: 611 SNKHPDAVTYTALFDALGKKGRLDEAAELI 640



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 176/412 (42%), Gaps = 15/412 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ +L+  G+ D+AL    E   +G     +G+   +  FC+  ++ +  S++ ++  
Sbjct: 376 NTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYS 435

Query: 218 RENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R     N  V+    I+ GFC+  R++EA K+L ++    CKP+ ++Y  +       G 
Sbjct: 436 RS---CNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGK 492

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E   ++    +    P    Y   + G   E ++ EA +L   +V   F      +N 
Sbjct: 493 SLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINL 552

Query: 337 LIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI S+        A  +    + KG    +   + +    C+    +  + V + +  ++
Sbjct: 553 LIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSN 612

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y  +   L   GRL EA  +I +M  KGLDP    + S++   C+   +    
Sbjct: 613 KHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDML 672

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L D+M        +  YN +I K  + G +E A +L   +L      DA T   L+E  
Sbjct: 673 NLLDRMVKRKPFRTI--YNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESC 730

Query: 516 CQETNLQAAFEV----FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            ++    +A++V    F +++  D+ L   +    ++     G+ + A KL+
Sbjct: 731 LKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLD----GNLVEADKLM 778


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 139/617 (22%), Positives = 265/617 (42%), Gaps = 22/617 (3%)

Query: 13  ISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN 72
           IS  I+ A  R+  +    PL+E  L +L +   L P +V  V+    L+    A+ F+ 
Sbjct: 61  ISGIILQALERSMCSE---PLVE--LERLDVE--LDPIVVNLVVRG--LSDSETAVRFYW 111

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           WA  +P F HS  +   ++  L +      +   L +VK   + L  S+YR ++   ++ 
Sbjct: 112 WAESRPGFDHSQFAIAYLVSLLFMDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRA 171

Query: 133 KNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
                    F+E V   C + G +  N  + VL  +   D   K +D    +G   +   
Sbjct: 172 GKFDSVIETFDEMVMSGCREFGVDY-NRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFT 230

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLD 250
           +  +I   C++ ++  V  +L ++ K   S     + A  + I+  CK  R+ +A ++++
Sbjct: 231 YSRWISALCQSNRIELVQELLVDMDKLGCS---PDIWACNIYIYYLCKQNRLPDALQMVE 287

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++R +   PD + Y+ V           E   + ++  K  + P        I GL    
Sbjct: 288 KMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNN 347

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLST 367
           ++ EA EL   +++    +   + NALI       SID    I+  +FM   G  P + T
Sbjct: 348 KVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKII--SFMRTNGCEPDIVT 405

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + L  + C     ++  ++ + +  +    D  SYN ++  LC + +L +A+  + +  
Sbjct: 406 YNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHM 465

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G   D    N L++A C+   ++ A +L+ +M   G   +  TY  LI+    VG   
Sbjct: 466 EVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYN 525

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A  LF  ML   + P+   Y  +L  LC+  + + A  +F+  +  +V       +T +
Sbjct: 526 LAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLI 585

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQESSPT 605
             L +R   + A  L + + +     D+     L+  L D  +  +A E  +++ E+   
Sbjct: 586 YWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGII 645

Query: 606 MLQEISAELFASLSSSS 622
           + +E+S  L + L S +
Sbjct: 646 LDREVSERLISVLKSKN 662


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 142/578 (24%), Positives = 237/578 (41%), Gaps = 70/578 (12%)

Query: 47  LSPSLVARVIN-PYLLTHHSLALGFFNWASQQ-PNFTHSP-----------LSYHSILKS 93
           L+P LV  +++   L++  ++ + FF WA    P F H+             S+     +
Sbjct: 48  LTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSDA 107

Query: 94  LSLSRQINAID-------SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
            SL     A D       S+L+    +K  LD++     I + +Q      AF +F ++K
Sbjct: 108 KSLLLGFIATDRRHDLHLSILRLTSPSKALLDTA-----IGAYVQSGQPHHAFQIFKKMK 162

Query: 147 FNCEDIGPEI--CNSLLAVLA---SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
                + P +  CN+LL  L    S   +  + + F++    G+  +   F + I+ +C 
Sbjct: 163 R--LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCL 220

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             K    +  L+ + K   S  N  V    I+   CK  R+ +A  +L +++ R   P+ 
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDN--VTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNR 278

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y I+   +  MG + E   V++   +  + P    Y   I GL  E RI EA +L + 
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDE 338

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + + K   D    N LI G +       A      M EKG  P   T + + K  CK  K
Sbjct: 339 MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGK 398

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D+       +  + +  D  +YN +++  C +G + EA+  + EM RK +  D    N+
Sbjct: 399 MDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT 458

Query: 441 LMEACCREDLLRPAKKL-----------------------------------WDQMFASG 465
           ++   CRE  L  A KL                                   WD+M    
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +  TYN +I    + G+ E A+   + +LE G+ PD TTY ++L G C+E +++ AF
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  NK V +         +  +  LC  G    A KL 
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLF 616



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 214/512 (41%), Gaps = 39/512 (7%)

Query: 40  QLGLRDSLSPSLVARVINPYLLTHHSLALGF--FNWASQ---------QPNFTHSPLSYH 88
           +LG    L   + +R + P   T++ L  G+    W  +         Q N      +Y+
Sbjct: 258 RLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
            ++  L    +I     +  +++  K+  D   Y  +I   ++     +AF +  E+   
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEK 377

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                    N ++     +G +D+A     +M   G     + +   I  +C+   +G+ 
Sbjct: 378 GVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA 437

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
              +DE+ ++   M   SV    I+   C+ K++EEA+K+L   R R    D ++Y  + 
Sbjct: 438 FRTMDEMGRKNMKM--DSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKF 327
             +   G+V     +  + ++  + P T  Y   I GL    +  +A  +L E++ SG  
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 328 TIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D+   N ++ G     D   A  F N M+E    P + T + L + LC     ++ ++
Sbjct: 556 P-DETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++    +     D  +YN +++ LC  GRL +A+ ++ EM+ K L PD   YN+++ A  
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 447 REDLLRPAKKLWDQMFASGC-----------------------SGNLKTYNILISKFSEV 483
               +R A++   +M   G                          +   Y+  I +    
Sbjct: 675 DSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTE 734

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           G+ + A+R+F    +KG+  D +TY +L++GL
Sbjct: 735 GKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 204/478 (42%), Gaps = 45/478 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++      G I++A ++   M      F+   F   I   C   ++   L++ D++  
Sbjct: 134 NTMVNGYCRAGRIEDARRLISGMPFPPDTFT---FNPLIRALCVRGRVPDALAVFDDMLH 190

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  S     V   +++   CK     +A  +LDE+R + C+PD + Y ++       G V
Sbjct: 191 RGCS--PSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDV 248

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L      G  P    Y   +  L    R  E +EL   + S K   D+   N +
Sbjct: 249 DEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTI 308

Query: 338 IGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA- 393
           + S+     +D   AI   + M E G +P + T S++   LC   + D+ VE+   L + 
Sbjct: 309 VTSLCQQGLVD--RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSY 366

Query: 394 ----------------------------------NDYFTDMESYNVMVSFLCTSGRLREA 419
                                             +D   D  ++N +++ LC  G +  A
Sbjct: 367 GCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRA 426

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V+++M   G +PD+  YNS+++  C E  +  A +L   + + GC  ++ T+N L+  
Sbjct: 427 IKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKG 486

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              V   E A +L  NM+     PDATT+ +++  LCQ+  L  A E       +  +  
Sbjct: 487 LCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPN 546

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           +S  +  + +L + G    A KLL G+++      ++  ++ ++  A ++E A++ ++
Sbjct: 547 QSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLR 604



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/546 (20%), Positives = 228/546 (41%), Gaps = 48/546 (8%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     +++ ++++L +  ++    +V   +     +     Y  ++ +  +    ++A 
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217

Query: 140 SVFNEVKF-NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            + +E++   CE   P+I   N L+  + ++G +D AL +  ++   G +   + +   +
Sbjct: 218 VLLDEMRAKGCE---PDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C + +  +V  +  E+    N      V    I+   C+   V+ A KV+D +    
Sbjct: 275 KSLCGSERWKEVEELFAEMAS--NKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG 332

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD + Y  + +    +G V +   +L + +  G  P T  Y   + GL    +   A+
Sbjct: 333 CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAE 392

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           EL   +V      D+   N +I S+     +D   AI     M E G  P + T +++  
Sbjct: 393 ELMAEMVCSDCPPDEVTFNTVIASLCQKGLVD--RAIKVVEQMSENGCNPDIVTYNSIID 450

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC     D+ +E+   L +     D+ ++N ++  LC+  R  +A  ++  M      P
Sbjct: 451 GLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPP 510

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL----------------- 476
           D + +N+++ + C++ LL  A +    M  +GC  N  TYNI+                 
Sbjct: 511 DATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570

Query: 477 ----------------ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
                           IS  ++ G++E AL L   M+  G++PD  TY SL  G+C+E  
Sbjct: 571 SGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDG 630

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVI 578
              A  +  +  +  +    +  +  ++  C+     +A      + S     D  +++I
Sbjct: 631 TDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYII 690

Query: 579 LLKSLA 584
           LL++LA
Sbjct: 691 LLEALA 696



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/517 (23%), Positives = 220/517 (42%), Gaps = 26/517 (5%)

Query: 30  WTPLLEQTLHQLGLRDS--LSPSLVARVINPYLLTHHSLALGFFNWA---------SQQP 78
           ++ LL+ T    G R +  L   + A+   P ++T++ L     N           S  P
Sbjct: 200 YSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLP 259

Query: 79  NFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +    P  ++Y  +LKSL  S +   ++ +  ++  NK   D   +  I+ SL Q     
Sbjct: 260 SHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVD 319

Query: 137 KAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           +A  V + + +  C    P+I   +S+L  L   G +D+A+++   +   G +  TI + 
Sbjct: 320 RAIKVVDHMSEHGCI---PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 376

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +   C   +      ++ E+   +       V    +I   C+   V+ A KV++++ 
Sbjct: 377 TVLKGLCSIEQWEHAEELMAEMVCSDCP--PDEVTFNTVIASLCQKGLVDRAIKVVEQMS 434

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD + Y  + +       + +   +L   +  G  P    +   + GL    R  
Sbjct: 435 ENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWE 494

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A++L   ++      D    N +I S+        AI     M E G +P  ST + + 
Sbjct: 495 DAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVV 554

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
             L K  K+ E +   K+LS     T D+ +YN ++S +  +G++ EA  +++ M   GL
Sbjct: 555 DALLKAGKTQEAL---KLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PD   Y SL    CRED    A ++  ++   G S +   YN ++  F +    + A+ 
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            F +M+  G  PD +TY  LLE L  E  L  A ++ 
Sbjct: 672 CFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLL 708



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/518 (20%), Positives = 211/518 (40%), Gaps = 90/518 (17%)

Query: 170 IDNALKMFDEMSHRG-----VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           ID+AL + D ++  G     +    +   + I + C   ++           +R  + + 
Sbjct: 74  IDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADA--------ERVFATLG 125

Query: 225 GSVIAVL---IIHGFCKGKRVE--------------------------------EAFKVL 249
            S   V    +++G+C+  R+E                                +A  V 
Sbjct: 126 ASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVF 185

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           D++  R C P  + Y I+ +         +  V+L + R  G  P    Y   I  +  E
Sbjct: 186 DDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNE 245

Query: 310 -----------------------------RRIC------EAKELGEVIVSGKFTIDDDVL 334
                                        + +C      E +EL   + S K   D+   
Sbjct: 246 GDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTF 305

Query: 335 NALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           N ++ S+     +D   AI   + M E G +P + T S++   LC   + D+ VE+   L
Sbjct: 306 NTIVTSLCQQGLVD--RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL 363

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            +     D  +Y  ++  LC+  +   A  ++ EM      PD   +N+++ + C++ L+
Sbjct: 364 KSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLV 423

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A K+ +QM  +GC+ ++ TYN +I        I+ A+ L  N+   G  PD  T+ +L
Sbjct: 424 DRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTL 483

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-- 569
           L+GLC     + A ++    ++ D     +  +T + SLC++G  L A + L+ ++ +  
Sbjct: 484 LKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGC 543

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607
           + +  ++ I++ +L  A + + A++ +  +   +P ++
Sbjct: 544 IPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLI 581



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 15/246 (6%)

Query: 58  PYLLTHHSLALGFFN---WASQQP---NFTHSPL-----SYHSILKSLSLSRQINAIDSV 106
           P ++T ++L  G  +   W   +    N  HS       ++++++ SL     +      
Sbjct: 475 PDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIET 534

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           LK +  N    + S Y  ++ +L++   TQ+A  + + +     D+     N++++ +  
Sbjct: 535 LKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITY--NTVISNITK 592

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G ++ AL +   M   G+   TI +    +  C      + + ML   R ++  +   +
Sbjct: 593 AGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRML--CRLQDMGLSPDA 650

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                I+ GFC+  R + A      +    C PD   Y I+ E       + E + +L  
Sbjct: 651 TFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVN 710

Query: 287 KRKLGV 292
              LGV
Sbjct: 711 LCSLGV 716


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 136/584 (23%), Positives = 229/584 (39%), Gaps = 50/584 (8%)

Query: 17  IISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ 76
           I++   R +P  +W   L          D L    +    N  LL+     L FF W   
Sbjct: 64  IVATITREKP--RWEQTLVSDFPSFNFADPLFFRELVATQNNVLLS-----LRFFQWLCT 116

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
             + T  P+S + + ++L  ++ + A   V     +     DS+     +  L      +
Sbjct: 117 NHDCTPDPISSNMLFEALLDAKAVRAAKMVRD---IAGFIPDSASLEQYVKCLCGVGFIE 173

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV--EFSTIGFGV 194
           +A  V+ ++K     I    CNS+L+     G  +   + + EM   G   + +T   G 
Sbjct: 174 EAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGC 233

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  FC++ ++ +   +L++  K    +  G+     +I GFC+ K      +VL  +  
Sbjct: 234 LIQAFCDSGQVARGYELLNQFLK--TGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIA 291

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R   P    Y+ +           E   V    +  G AP    Y   I GL       E
Sbjct: 292 RNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGE 351

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A++L   ++      +    N ++ GS+ S D   A   +N M  KG   T  T + +  
Sbjct: 352 ARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIIS 411

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC R KSDE  EV+K +S      D  +YN ++   C  G++ E   ++ E+  +   P
Sbjct: 412 ELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQP 471

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY-------------------- 473
            VS Y  L+   C++     AK+L   M + G   N  TY                    
Sbjct: 472 SVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELY 531

Query: 474 ---------------NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                          N +IS+    G+ + A  +F  M E G+  DA TY SL+ G C+E
Sbjct: 532 NETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKE 591

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
             +  +  + N+ V   +  + S  ++ +I LC+ G    A +L
Sbjct: 592 GKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRL 635



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI +  +PT+ T   +   LCK  +  E   V+  L    Y  D   Y  M+  LC  G 
Sbjct: 289 MIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGS 348

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             EA  +  EM  KG+ P+   YN+++    +      A +L+++M   G      T N 
Sbjct: 349 FGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNK 408

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +IS+    G+ + A  +F  M E G+  DA TY SL+ G C+E  +     + N+ V  D
Sbjct: 409 IISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQD 468

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
              + S+    +I  C+ G F  A +LL  +SS   H +++ 
Sbjct: 469 PQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYT 510



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 178/437 (40%), Gaps = 11/437 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++     ++   ++  VL  +           Y+ II  L + +   +A+ VFN++
Sbjct: 265 TYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDL 324

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K         +  +++  L   G    A K++ EM  +G++ +   +   +    ++   
Sbjct: 325 KDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDF 384

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   + +E+  +       +V    II   C   + +EAF+V  ++     + D I Y 
Sbjct: 385 ERACELYNEMCNKGYGTT--TVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYN 442

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVS 324
            +   F   G V ER  +L +       P  + Y   I+    +     AK L G++   
Sbjct: 443 SLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSK 502

Query: 325 G----KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           G     +T D      L GS+ S D       +N    KG   T +T + +   LC R K
Sbjct: 503 GLHPNAYTYD----TMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGK 558

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
           SDE  E++K +S      D  +YN ++   C  G++ ++  ++ E+  +GL P  S Y S
Sbjct: 559 SDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYAS 618

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   C+      AK+LW  M + G   +      LIS   + G     +     MLE  
Sbjct: 619 LIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENK 678

Query: 501 VAPDATTYTSLLEGLCQ 517
           + P    +  L E L Q
Sbjct: 679 IKPKKAAFEDLAECLIQ 695



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 142/347 (40%), Gaps = 3/347 (0%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A ++F+++  RG     + +   I   CE    G+   +  E+  +   M   +     +
Sbjct: 317 AYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDK--GMQPNAYTYNTM 374

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +HG  K    E A ++ +E+  +      +    +  E    G   E   V KK  + G+
Sbjct: 375 LHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGI 434

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
                 Y   I G   E ++ E   L   +V+        +   LI  S    D  +A  
Sbjct: 435 QADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKR 494

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
               M  KG  P   T   +     K    + + E+Y       Y T   + N ++S LC
Sbjct: 495 LLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELC 554

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           + G+  EA  + ++M   G+  D   YNSL+   C+E  +  +  L +++ A G   +  
Sbjct: 555 SRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSAS 614

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           +Y  LI +  + G+ E A RL+ +M+ KG+ P A     L+ GLC++
Sbjct: 615 SYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQ 661


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/522 (22%), Positives = 225/522 (43%), Gaps = 68/522 (13%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLS-----------------------LSRQINAI 103
           AL  F+  S++ +   +P  Y +I+  L+                        SR   ++
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EICNSLL 161
            +VL +++ +K T   +V+  +I +  +    ++A  V+ ++     D+ P  + CN +L
Sbjct: 113 FNVLSRLESSKFT--PNVFGVLIIAFSEMGLVEEALWVYYKM-----DVLPAMQACNMVL 165

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G  D   K++ +M  RG   + + +G  I   C      +   + DE+   E  
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI--EKK 223

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +    VI  ++I G C   R+ EA  +   +R     P+   Y  + + +  +  V +  
Sbjct: 224 IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKAL 283

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + ++    G+ P    +   I GL      C+  E+   + + KF ID           
Sbjct: 284 ELYQEMLGDGLLPNVVTFGILIDGL------CKTDEM---VSARKFLID----------- 323

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                         M   G VP +   + L    CK     E + ++  +  ++   D+ 
Sbjct: 324 --------------MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVF 369

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y++++  LC   R+ EA G++QEMK+KG  P+   YN+L++  C+E  +  A ++  QM
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N+ T++ LI  + + G++E A+ L+  M+ KG+ PD   YT+L++G  ++ N 
Sbjct: 430 TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNT 489

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + AF +  +     +      LS  +  LC+ G    A KL 
Sbjct: 490 KEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 176/427 (41%), Gaps = 25/427 (5%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLL 161
           D V +    N +T     Y  +I    +  +  KAF +F+E+    + I P   I   L+
Sbjct: 183 DMVARGASPNVVT-----YGTLIDGCCRQGDFLKAFRLFDEMIE--KKIFPTVVIYTILI 235

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L  +  I  A  MF  M + G+  +   +   +  +C+ A + + L +  E+    + 
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG--DG 293

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           ++   V   ++I G CK   +  A K L ++      P+   Y  + + +   G++ E  
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
            +  +  K  + P    Y   I GL    R+ EA  L + +    F  +    N LI G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
               +   AI   + M EKG  P + T S L    CK  K +  + +Y  +       D+
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW-- 458
            +Y  ++      G  +EA+ + +EM+  GL P+V   + L++  C++  +  A KL+  
Sbjct: 474 VAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533

Query: 459 -----------DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                      +++  S CS N   Y  LI      G I  A + F +M   G+ PD  T
Sbjct: 534 KTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFT 593

Query: 508 YTSLLEG 514
              +++G
Sbjct: 594 CIVIIQG 600



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 2/248 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ +G  P + T   L    C++    +   ++  +     F  +  Y +++  LC   R
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  + + M+  G+ P++  YN++M+  C+   ++ A +L+ +M   G   N+ T+ I
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI    +  E+  A +   +M   GV P+   Y  L++G C+  NL  A  + ++   H+
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAI 593
           ++      S  +  LC       A  LL+ +     L ++ ++  L+        +E AI
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 594 EHIKWIQE 601
           E    + E
Sbjct: 424 EVCSQMTE 431



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/516 (20%), Positives = 210/516 (40%), Gaps = 52/516 (10%)

Query: 26  PARKWTPLLEQTLHQLGLRDSL---SPSLVARVINPYLLTHHSL------------ALGF 70
           PA +   ++   L + G  D++      +VAR  +P ++T+ +L            A   
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F+   ++  F  + + Y  +++ L    +I+  +S+ + ++ + +  +   Y  ++    
Sbjct: 216 FDEMIEKKIFP-TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM-SHRGVEFST 189
           +  + +KA  ++ E+          + + LL  + + G + + L   DEM S R      
Sbjct: 275 KIAHVKKALELYQEM----------LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 190 IGFGV----FIWK-----FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             FGV    F++      +C+   L + LS+  E+ K E  ++       ++I G C   
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE--ILPDVFTYSILIKGLCGVD 382

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+EEA  +L E++ +   P+ + Y  + + +   G++ +   V  +  + G+ P    + 
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I G     ++  A  L   +V      D     ALI G     + + A      M E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES-------------YNVM 406
           G  P + TLS L   LCK  +  + ++++   +  D      +             Y  +
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTAL 562

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LCT GR+ +A     +M+  GL PDV     +++   R   LR    L   +   G 
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
             N   Y +L   + E G ++ ALR   ++   G+ 
Sbjct: 623 IPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIG 658



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P +   + +   L K+ + D + +VY  + A     ++ +Y  ++   C  G   +A+ 
Sbjct: 155 LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  EM  K + P V  Y  L+   C E  +  A+ ++  M  SG   NL TYN ++  + 
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           ++  ++ AL L+  ML  G+ P+  T+  L++GLC+   + +A +      +  V+    
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
           + +  +   C+ G+   A  L   +     L    ++ IL+K L     +E A
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 237/558 (42%), Gaps = 49/558 (8%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L LR  +   LV  V+   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 72  KWGPDAERALEVLMLR--VDHWLVREVMKTDVGV--NVKMQFFRWAAKKRNYQHDTSTYM 127

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++  L L  Q   +  +++++  + I + + +    +I  L   K   KA ++F ++K 
Sbjct: 128 ALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKA 187

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLG 206
                  +  NS++ +L  +G  +   ++++EMS+ G  +  T+ +   I  FC+  +  
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQD 247

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + +L+E++  EN M   + I  +II  F K   V  A  + +E+R   C+PD   Y  
Sbjct: 248 SAIRLLNEMK--ENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTE 305

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVI 322
           +       G + E      + ++ G  P T      I  L    R+ +     +E+G   
Sbjct: 306 LIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSH 365

Query: 323 VSGKFTIDDDVLNALIGSVS---------------SIDP------------------RSA 349
                   + ++ AL  S S                I P                    A
Sbjct: 366 CIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKA 425

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           ++    M EKG  P  +   +L   L K  + D   E+++ L  N   +    Y VM+  
Sbjct: 426 MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L  +GRL +A  +  EM + G  P+V  YN+LM    R  +L  A     +M   GC  +
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +YNI+++  ++ G    A+ +  NM    + PDA +Y ++L  L      + A E+  
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMK 605

Query: 530 K----SVNHDVMLARSIL 543
           +       +D++   SIL
Sbjct: 606 EMNALGFEYDLITYSSIL 623



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 179/427 (41%), Gaps = 22/427 (5%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
            +N  S + +     ++Y +++ +   L RQ +AI  +L ++K N +   + +Y  II  
Sbjct: 216 LYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAI-RLLNEMKENGMQPTAKIYTMIISL 274

Query: 129 LIQGKNTQKAFSVFNEVKF-NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGV 185
             +  N   A S+F E+++  C    P++     L+  L   G ID A   + EM   G 
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCR---PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGC 331

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE---NSMINGSVIAVLIIHGFCKGKRV 242
           +  T+     I    +  +L   L + +E+       N +   ++I  L    F    RV
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL----FESKSRV 387

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            E F   + ++     P    Y I+ + F     + +  ++L++  + G  P    Y   
Sbjct: 388 SEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 303 ILGLIVERRI---CEA-KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           I  L   +R    CE  +EL E   S    +   ++  L G    +D   AI  F+ M +
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHL-GKAGRLD--DAINLFDEMSK 504

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G  P +   + L   L +    DE +   + +  +    D+ SYN++++ L  +G    
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++  MK   + PD   YN+++ A     +   A +L  +M A G   +L TY+ ++ 
Sbjct: 565 AMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILE 624

Query: 479 KFSEVGE 485
              +V +
Sbjct: 625 AIGKVDQ 631


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 188/435 (43%), Gaps = 44/435 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++     + Q+   + VL ++K      D   Y  +I S         A  +F E
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 145 V-KFNCEDIGPEICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + K NCE   P +    + + A+  DG ID A+K+ DEM  +G+E  T+ +         
Sbjct: 199 LLKDNCE---PTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNA------- 248

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
                                         II G CK   V++AF++L  L  R CKPD 
Sbjct: 249 ------------------------------IIRGMCKEMMVDKAFELLRSLSSRGCKPDI 278

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y I+       G   E E ++ +   +G  P    +   I  L  + ++ EA  L   
Sbjct: 279 ITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS 338

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +       D    + LI G         A  F  +MI  G +P +   + +   LC+  K
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGK 398

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
           +D+ +EV++ L       ++ SYN + S L +SG    A  +I ++  +G+DPD   YNS
Sbjct: 399 ADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   CR+ ++  A +L   M +     N+ +YNI++    +V     A+ +   M EKG
Sbjct: 459 LISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKG 518

Query: 501 VAPDATTYTSLLEGL 515
             P+ TTY  L+EG+
Sbjct: 519 CQPNETTYILLIEGI 533



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 167/373 (44%), Gaps = 3/373 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I GF K  ++E A +VLD ++ R   PD + Y I+   F   G +     + ++  K  
Sbjct: 144 LISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN 203

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
             P    Y   I   I++  I  A +L + ++S     D    NA+I G    +    A 
Sbjct: 204 CEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAF 263

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                +  +G  P + T + L + L  R K  E  ++   + +     ++ ++++++  L
Sbjct: 264 ELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G++ EA  +++ MK KGL PD   Y+ L+   CRE  L  A +  + M + GC  ++
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDI 383

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN +++     G+ + AL +F  + E G  P+ ++Y +L   L    +   A E+  K
Sbjct: 384 VNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILK 443

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
            +N  +       ++ +  LCR G    A +LL  + S     +  S+ I+L  L     
Sbjct: 444 LLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNR 503

Query: 589 VEMAIEHIKWIQE 601
              AIE +  + E
Sbjct: 504 ANDAIEVLAAMTE 516



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 164/374 (43%), Gaps = 4/374 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +C  L+    +   I  A ++ + +   G +     +   I  F +  +L     +LD +
Sbjct: 106 LCTKLIKGFFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRM 164

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + R    +   V   ++I  FC   +++ A ++ +EL    C+P  I Y I+ E   L G
Sbjct: 165 KSR--GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDG 222

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     +L +    G+ P T  Y   I G+  E  + +A EL   + S     D    N
Sbjct: 223 GIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYN 282

Query: 336 ALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+ ++ S    S      + MI  G  P + T S L   LC+  K +E V + + +   
Sbjct: 283 ILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEK 342

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D   Y+ +++  C  GRL  A   ++ M   G  PD+  YN++M   CR      A
Sbjct: 343 GLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQA 402

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++++++   GC  N+ +YN L S     G+   AL +   +L +G+ PD  TY SL+  
Sbjct: 403 LEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISC 462

Query: 515 LCQETNLQAAFEVF 528
           LC++  +  A E+ 
Sbjct: 463 LCRDGMVDEAIELL 476



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 168/413 (40%), Gaps = 40/413 (9%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I   I+    + A  V + +K       P++   N ++    S G +D AL+
Sbjct: 137 DVFAYNALISGFIKANQLENANRVLDRMK--SRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +F+E+     E + I + + I     +  +   + +LDE+  +   +   ++    II G
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK--GLEPDTLTYNAIIRG 252

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK   V++AF++L  L  R CKPD I Y I+       G   E E ++ +   +G  P 
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
                      +V   I     +G +   GK                      A+     
Sbjct: 313 -----------VVTHSIL----IGTLCRDGKV-------------------EEAVNLLRS 338

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M EKG  P       L    C+  + D   E  + + ++    D+ +YN +++ LC +G+
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGK 398

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +A  V +++   G  P+VS YN+L  A         A ++  ++   G   +  TYN 
Sbjct: 399 ADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LIS     G ++ A+ L  +M      P+  +Y  +L GLC+      A EV 
Sbjct: 459 LISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVL 511



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 131/301 (43%), Gaps = 39/301 (12%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVS-GKFTIDDDVLNALI-GSVSSIDPRS 348
           G  P      + I G    R I +A  + E++   GK   D    NALI G + +    +
Sbjct: 99  GYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGK--PDVFAYNALISGFIKANQLEN 156

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    + M  +G +P + T + +  + C R K D  +E+++ L  ++    + +Y +++ 
Sbjct: 157 ANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIE 216

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-------DLLRP-------- 453
                G +  A  ++ EM  KGL+PD   YN+++   C+E       +LLR         
Sbjct: 217 ATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKP 276

Query: 454 --------------------AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
                                +KL  +M + GC  N+ T++ILI      G++E A+ L 
Sbjct: 277 DIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLL 336

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
            +M EKG+ PDA  Y  L+ G C+E  L  A E     ++   +      +T M  LCR 
Sbjct: 337 RSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRT 396

Query: 554 G 554
           G
Sbjct: 397 G 397



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+  K +E +   + +    Y  D+     ++     S  + +A  V++ ++R G  PDV
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDV 138

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L+    + + L  A ++ D+M + G   ++ TYNI+I  F   G+++ AL +F  
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLC 551
           +L+    P   TYT L+E    +  +  A     E+ +K +  D +   +I+      +C
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR----GMC 254

Query: 552 RRGHFLVATKLLRGLSSDLGHSD--SHVILLKSL 583
           +      A +LLR LSS     D  ++ ILL++L
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTL 288


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 188/401 (46%), Gaps = 9/401 (2%)

Query: 159 SLLAVLASDGYIDNALKMFDEM----SHRGVEF--STIGFGVFIWKFCENAKLGQVLSML 212
           +L+  L   G ++ ALK+  EM    S  GV      I + + I   C+  +  +   + 
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELF 260

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           +E++ +   MI   +    +IHGFC   + +++  + DE+  +  +PD + + ++ +   
Sbjct: 261 EEMKAQ--GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLC 318

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E + +L+   + G+ P    Y   I G  +   +  A+EL   + S     D+ 
Sbjct: 319 KEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEI 378

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
               LI G   +   + A+  +N M++ G+ P ++T   L K L ++ K  +  +++ V+
Sbjct: 379 SYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVM 438

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  + + Y + +  LC +  L EA  +  E+K      ++  Y+ L++  C+   L
Sbjct: 439 KTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKL 498

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +L++++   G   ++ TYNI+I  F +VG+++ A  LF  M E G  PD   Y +L
Sbjct: 499 ETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTL 558

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           L G C+   L+   ++ +K V  DV    +  +  +  LC+
Sbjct: 559 LCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCK 599



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 214/459 (46%), Gaps = 21/459 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++K L +  +I+    +  +++    T ++  Y  +I  L Q  N   A  +  E
Sbjct: 162 VTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKE 221

Query: 145 VKFNCEDIG----PEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +  +    G    P +    + +  L   G  D A ++F+EM  +G+    I +   I  
Sbjct: 222 MLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHG 281

Query: 199 FCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           FC   K  Q   + DE+  +  +  M+  SV+    I   CK  +V EA K+L+ +  R 
Sbjct: 282 FCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL----IDTLCKEGKVTEAKKLLEVMIQRG 337

Query: 257 CKPDFIAYRIVAEEFKLMGSVFE-REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             P+ I Y  + + F ++G +   RE+ L    K G+ P    Y   I G     ++ EA
Sbjct: 338 IVPNLITYNSLIDGFCMVGDLNSARELFLSMPSK-GLEPDEISYTTLINGYCKTWKVKEA 396

Query: 316 KEL-GEVIVSGK---FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
             L  E++  GK    T    +L  L       D +     F  M   G           
Sbjct: 397 MNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK---LFGVMKTYGVSANSQIYGIF 453

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK +   E +E++  L + ++  ++E+Y+ ++  LC +G+L  A+ + +++ ++GL
Sbjct: 454 LDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGL 513

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV  YN ++   C+   +  A  L+++M  +GC+ ++  YN L+  F E  ++E  ++
Sbjct: 514 QPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK 573

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           L H M++K V+P+A + T +++ LC++   +   ++  K
Sbjct: 574 LLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 210/490 (42%), Gaps = 13/490 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  LA   +      +++EM   G+        +     C   ++ + L+ +  + +
Sbjct: 95  NRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILR 154

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    I   V    +I G C   R+ EA ++   ++   C P+ + Y  + +     G+V
Sbjct: 155 R--GYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV 212

Query: 278 -----FEREVVLKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
                  +E+ L    + GV   P    Y   I GL    R  EAKEL E + +     D
Sbjct: 213 NIALKLHKEM-LNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPD 271

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               + LI G   +     +   F+ M+++G  P + T S L   LCK  K  E  ++ +
Sbjct: 272 VISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLE 331

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           V+       ++ +YN ++   C  G L  A  +   M  KGL+PD   Y +L+   C+  
Sbjct: 332 VMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTW 391

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            ++ A  L+++M   G S N+ TY  L+    + G++  A +LF  M   GV+ ++  Y 
Sbjct: 392 KVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYG 451

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             L+GLC+   L  A E+FN+  +++  L     S  +  LC+ G    A +L   LS +
Sbjct: 452 IFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQE 511

Query: 570 LGHSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627
               D  ++ I++       +V+ A    + ++E+  T        L       +  E +
Sbjct: 512 GLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEV 571

Query: 628 LLLLHALQEK 637
           + LLH + +K
Sbjct: 572 IKLLHKMVQK 581



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 52/308 (16%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N   G++++I    A  FF+ M+    +P +S+ + L   L K N   +L  +Y  +   
Sbjct: 64  NCKTGNITAIQ---AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLA 120

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ + +++ + LC   R+ EA   +  + R+G  P+V  Y +L++  C E  +  A
Sbjct: 121 GLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR----------------------- 491
            +L+ +M   GC+ N  TY  LI    + G +  AL+                       
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITY 240

Query: 492 ------------------LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
                             LF  M  +G+ PD  +Y++L+ G C       +  +F++ V+
Sbjct: 241 SIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVD 300

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHV---ILLKSLAD 585
             V       S  + +LC+ G    A KLL     RG+  +L   +S +    ++  L  
Sbjct: 301 QGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNS 360

Query: 586 AREVEMAI 593
           ARE+ +++
Sbjct: 361 ARELFLSM 368


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 38/356 (10%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           LK+ +EM  +G++ +   +   I   C+  K+ +   +L E+      +    VI   +I
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI--SEGIAPDGVIYTTLI 265

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            GFCK   V  A+++ DE++ R+  PDFI Y  V                          
Sbjct: 266 DGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAV-------------------------- 299

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVF 352
                    I GL    R+ EA +L   +V  +   D+    ALI G       + A   
Sbjct: 300 ---------ICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSL 350

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            N M++ G  P + T + L+  LCK  + D   E+   +       ++ +YN +V+ LC 
Sbjct: 351 HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 410

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G + +A  ++++M+  G  PD   Y +LM+A C+   +  A +L  QM        + T
Sbjct: 411 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 470

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +N+L++ F   G +E   +L   MLEKG+ P+ATTY SL++  C   N++A  E++
Sbjct: 471 FNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIY 526



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 191/434 (44%), Gaps = 11/434 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN    P +Y+ ++  L  + ++   + VL+++    I  D  +Y  +I    +  N  
Sbjct: 220 KPN----PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 275

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A+ +F+E++     I P+     +++  L   G +  A K+F EM  + +E   + +  
Sbjct: 276 SAYRLFDEMQK--RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  +C+  K+ +  S+ +++ +    +    V    +  G CK   V+ A ++L E+  
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQM--GLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 391

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  + +   Y  +       G++ +   ++K     G  P    Y   +      R +  
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 451

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A EL   ++  +        N L+ G   S           +M+EKG +P  +T ++L K
Sbjct: 452 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 511

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C RN      E+Y+ + A     D  +YN+++   C +  ++EA+ + ++M  KG + 
Sbjct: 512 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 571

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
            VS YN+L++   +      A++L++QM   G   + + YNI      + G++E  L L 
Sbjct: 572 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELC 631

Query: 494 HNMLEKGVAPDATT 507
              +EK +  D  T
Sbjct: 632 DEAIEKCLVGDIQT 645



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 176/397 (44%), Gaps = 9/397 (2%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           P   N ++ +L   G +  A ++  EM   G+    + +   I  FC+   +     + D
Sbjct: 223 PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFD 282

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E++KR+ S     +    +I G C+  RV EA K+  E+  +  +PD + Y  + + +  
Sbjct: 283 EMQKRKIS--PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 340

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E   +  +  ++G+ P    Y     GL     +  A EL   +      ++   
Sbjct: 341 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 400

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N+L+ G   + +   A+     M   G  P   T + L    CK   S E+V  +++L 
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCK---SREMVRAHELLR 457

Query: 393 A---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
                +    + ++NV+++  C SG L +   +++ M  KG+ P+ + YNSL++  C  +
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +R   +++  M A G   +  TYNILI    +   ++ A  L  +M+ KG     ++Y 
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           +L++G  +      A E+F +     ++  R I + F
Sbjct: 578 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 165/394 (41%), Gaps = 64/394 (16%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A K+FD+M + G+  S     +FI    E+                    ++G  IA+  
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSED--------------------LDGIKIAL-- 202

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
                KG   E   K+++E++I+  KP+   Y  V       G V E E VL++    G+
Sbjct: 203 -----KG---EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGI 254

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           AP    Y   I G       C+                       +G+VSS     A   
Sbjct: 255 APDGVIYTTLIDGF------CK-----------------------LGNVSS-----AYRL 280

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M ++   P   T + +   LC+  +  E  +++  +       D  +Y  ++   C 
Sbjct: 281 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 340

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G+++EA+ +  +M + GL P++  Y +L +  C+   +  A +L  +M   G   N+ T
Sbjct: 341 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 400

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L++   + G I+ A++L  +M   G  PDA TYT+L++  C+   +  A E+  + +
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 460

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + ++       +  M   C  G      KLL+ +
Sbjct: 461 DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 494



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 121/253 (47%), Gaps = 4/253 (1%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P   T + +   LCK  K  E   V + + +     D   Y  ++   C  G +  
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 276

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           AY +  EM+++ + PD   Y +++   C+   +  A KL+ +M       +  TY  LI 
Sbjct: 277 AYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 336

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            + + G+++ A  L + ML+ G+ P+  TYT+L +GLC+   +  A E+ ++     + L
Sbjct: 337 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 396

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHI 596
                ++ +  LC+ G+   A KL++ +     H D  ++  L+ +   +RE+  A E +
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456

Query: 597 KWI--QESSPTML 607
           + +  +E  PT++
Sbjct: 457 RQMLDRELQPTVV 469



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 181/431 (41%), Gaps = 9/431 (2%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAV 163
           +++++++  +  +   Y  +I  L +     +A  V  E+    E I P+  I  +L+  
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI--SEGIAPDGVIYTTLIDG 267

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKRENSM 222
               G + +A ++FDEM  R +    I +   I   C+  ++ +   +  E V KR   +
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR---L 324

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
               V    +I G+CK  +++EAF + +++      P+ + Y  +A+     G V     
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-V 341
           +L +  + G+      Y   + GL     I +A +L + +    F  D      L+ +  
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            S +   A      M+++   PT+ T + L    C     ++  ++ K +       +  
Sbjct: 445 KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNAT 504

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++   C    +R    + + M  KG+ PD + YN L++  C+   ++ A  L   M
Sbjct: 505 TYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDM 564

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G +  + +YN LI  F +  +   A  LF  M  +G+  D   Y    +    E  +
Sbjct: 565 VGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKM 624

Query: 522 QAAFEVFNKSV 532
           +   E+ ++++
Sbjct: 625 ELTLELCDEAI 635


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 198/490 (40%), Gaps = 21/490 (4%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +C  L+  L   G   +A ++       G       +   +  +C   +L       D  
Sbjct: 76  LCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRL-------DAA 128

Query: 216 RKRENSMI--NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           R+   SM     +     II G C   RV +A  +LD++  R C+P  + Y ++ E    
Sbjct: 129 RRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCK 188

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID--- 330
                E   VL + R  G  P    Y   I G+  E R+ +AKE+   + S  F  D   
Sbjct: 189 SSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVS 248

Query: 331 -DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
              VL  L  +    D +   V F  M++K  VP   T   L +  C+    +  ++V +
Sbjct: 249 YTTVLKGLCAARRWDDVK---VLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQ 305

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +S +    +    N++++ +C  GR+ +AY  +  M   G +PD   Y +++   CR  
Sbjct: 306 QMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAG 365

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
               AK+L  +M    C  N  T+N  I    + G IE A++L   M E G +    TY 
Sbjct: 366 RWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYN 425

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-SS 568
           +L+ G C +  + +A E+FN   N          +T +  LC       A +LL G+   
Sbjct: 426 ALVHGFCVQGRVDSALELFN---NLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQK 482

Query: 569 DLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627
           D   ++ +  +L+        VE A+E +  + E   T        L   ++     E  
Sbjct: 483 DCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEA 542

Query: 628 LLLLHALQEK 637
           L LLH L  K
Sbjct: 543 LELLHGLVSK 552



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 207/475 (43%), Gaps = 45/475 (9%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G + +AL + D+M  RG + S + + V +   C+++  G+ +++LDE+R +     
Sbjct: 151 LCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK--GCT 208

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V   +II+G C+  RV++A ++L+ L     +PD ++Y  V +         + +V+
Sbjct: 209 PNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVL 268

Query: 284 LKKKRKLGVAPRTNDY----REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +       P    +    R F  G +VER I   +++ +   +   T+ + V+NA I 
Sbjct: 269 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINA-IC 327

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
               +D   A  F N M   G  P   + + + + LC+  + +   E+   +   +   +
Sbjct: 328 KQGRVD--DAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL---------------------------- 431
             ++N  +  LC  G + +A  +I+ M   G                             
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN 445

Query: 432 ----DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
               +P+   Y +L+   C  + L  A +L   M    C  N  T+N+L+S F + G +E
Sbjct: 446 NLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVE 505

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A+ L + M+E G  P+  T+ +LL+G+ ++ N + A E+ +  V+  V L     S+ +
Sbjct: 506 EAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVV 565

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHSDS---HVILLKSLADAREVEMAIEHIKWI 599
             L R      A ++L  +  D+G       +  +L +L    E + AI+   ++
Sbjct: 566 DVLSREDRTEEAIQMLHAV-QDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYM 619



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/458 (21%), Positives = 199/458 (43%), Gaps = 10/458 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  +L+++  S       +VL +++    T +   Y  II  + +      A  + 
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEIL 234

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           N  + +     P+I +  ++L  L +    D+   +F EM  +    + + F + +  FC
Sbjct: 235 N--RLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 292

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
               + + + +L ++   ++     + +  ++I+  CK  RV++A+  L+ + +  C PD
Sbjct: 293 RGGMVERAIQVLQQMS--QHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 350

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  V       G     + +L +  +    P    +  FI  L  +  I +A +L E
Sbjct: 351 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE 410

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           ++     ++     NAL+ G        SA+  FN +  +   P   T + L   LC   
Sbjct: 411 LMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAE 467

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + D   E+   +   D   +  ++NV+VSF C  G + EA  ++ +M   G  P++  +N
Sbjct: 468 RLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 527

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L++   ++     A +L   + + G S +  TY+ ++   S     E A+++ H + + 
Sbjct: 528 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 587

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           G+ P    Y  +L  LC+      A + F   V++  M
Sbjct: 588 GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCM 625



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 174/426 (40%), Gaps = 12/426 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    +SY ++LK L  +R+ + +  +  ++   K   +   +  ++    +G   ++A 
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAI 301

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            V  ++  +       +CN ++  +   G +D+A    + M   G    TI +   +   
Sbjct: 302 QVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGL 361

Query: 200 CENAKLGQVLSMLDE-VRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           C   +      +L E VRK    N +   + I +L     C+   +E+A K+++ +    
Sbjct: 362 CRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICIL-----CQKGLIEQAIKLIELMPEYG 416

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C    + Y  +   F + G V   +  L+    L   P T  Y   + GL    R+  A 
Sbjct: 417 CSVGIVTYNALVHGFCVQGRV---DSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAA 473

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL   ++     ++    N L+           A+   N M+E G  P L T + L   +
Sbjct: 474 ELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGI 533

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K   S+E +E+   L +     D  +Y+ +V  L    R  EA  ++  ++  G+ P V
Sbjct: 534 TKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKV 593

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN ++ A C+      A   +  M ++GC  N  TY ILI   +  G ++ A  +   
Sbjct: 594 GMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSE 653

Query: 496 MLEKGV 501
           +  KGV
Sbjct: 654 LYAKGV 659



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 32/241 (13%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS---------- 408
           +G  P +   + L +NLC+R ++ +   V +   A+    D+ +YN +V+          
Sbjct: 68  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDA 127

Query: 409 ----------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                  LC  GR+ +A  ++ +M ++G  P V  Y  L+EA C
Sbjct: 128 ARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVC 187

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +      A  + D+M A GC+ N+ TYN++I+     G ++ A  + + +   G  PD  
Sbjct: 188 KSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIV 247

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +YT++L+GLC          +F + V+   +         +   CR G    A ++L+ +
Sbjct: 248 SYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQM 307

Query: 567 S 567
           S
Sbjct: 308 S 308



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 16/215 (7%)

Query: 382 DELVEVYKVL---SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           D+L E  +++   S+     D+     ++  LC  GR  +A  V++  +  G   DV  Y
Sbjct: 53  DDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAY 112

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+   CR   L  A++L   M       +  TY  +I    + G +  AL L  +ML+
Sbjct: 113 NTLVAGYCRYGRLDAARRLIASMPV---PPDAYTYTPIIRGLCDRGRVGDALALLDDMLQ 169

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRG 554
           +G  P   TYT LLE +C+ +    A  V +    K    +++    I++     +CR G
Sbjct: 170 RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIIN----GMCREG 225

Query: 555 HFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
               A ++L  LSS     D  S+  +LK L  AR
Sbjct: 226 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAAR 260


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 198/470 (42%), Gaps = 58/470 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +L+  L  +G +  A+ + D M   G++ + I +G  +   C   K+G  +S L+ +RK
Sbjct: 183 TTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC---KMGDTVSALNLLRK 239

Query: 218 REN-SMINGSVIA------VLIIHGFCKGKRVEEAFKVLDE-LRIRECKPDFIAYRIVAE 269
            E  S I  +V+         +I+GFC   R  EA ++L E L  ++  PD + Y  +  
Sbjct: 240 MEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALIN 299

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F   G  FE E +  +    G+ P T  Y   I G   + R+  A+ +  ++ +   + 
Sbjct: 300 AFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSP 359

Query: 330 DDDVLNALI------------------------------------GSVSSIDPRSAIVFF 353
           D    N LI                                    G     D  +A    
Sbjct: 360 DIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLL 419

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-----------NDYFTDMES 402
             M+  G  P + T + L   LC   K  + +E++K +             N    D+++
Sbjct: 420 QEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQT 479

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++S L   G+  EA  + +EM  +G+ PD   YNS++   C++  L  A +++D M 
Sbjct: 480 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMG 539

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           +   S N+ T+  LI+ + + G ++  L LF  M  +G+  +A TY +L+ G  +  N+ 
Sbjct: 540 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNIN 599

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            A ++F + +   V      +   +  L  +     A  +L  L   +G+
Sbjct: 600 GALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGY 649



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 29/376 (7%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N+L+     +G    A +++DEM  RG+  STI +   I  FC+  +L    
Sbjct: 287 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAE 346

Query: 210 SMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
            M   +  +  S     +I    +I G+C+ KRV++  K+L E+       + I Y  + 
Sbjct: 347 HMFYLMATKGCS---PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
             F  +G +   + +L++    GV P        + GL    ++ +A E+ + +   K  
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 463

Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           ID                  A   FN     G  P + T + L   L    K  E  E+Y
Sbjct: 464 ID------------------ASHPFN-----GVEPDVQTYNILISGLINEGKFLEAEELY 500

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + +       D  +YN ++  LC   RL EA  +   M  K   P+V  + +L+   C+ 
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 560

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +    +L+ +M   G   N  TY  LI  F +VG I GAL +F  M+  GV PD  T 
Sbjct: 561 GRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITI 620

Query: 509 TSLLEGLCQETNLQAA 524
            ++L GL  +  L+ A
Sbjct: 621 RNMLTGLWSKEELKRA 636



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 192/442 (43%), Gaps = 42/442 (9%)

Query: 157 CNS-----LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           CN+     L+    S   +  AL  F +++  G   + + F   +   C   ++ + L +
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
             ++ K         V    +++G C+  RV EA  +LD +     +P+ I Y  + +  
Sbjct: 171 FHQMCKPN------VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 224

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC------------EAKE-L 318
             MG       +L+K  ++      +  +  ++   +ERR C            EA++ L
Sbjct: 225 CKMGDTVSALNLLRKMEEV------SHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLL 278

Query: 319 GEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E++   K + D    NALI + V       A   ++ M+ +G +P+  T S++    CK
Sbjct: 279 QEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCK 338

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +N+ D    ++ +++      D+ ++N +++  C + R+ +   ++ EM   GL  +   
Sbjct: 339 QNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 398

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +L+   C+   L  A+ L  +M +SG   N+ T N L+    + G+++ AL +F  M 
Sbjct: 399 YTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 458

Query: 498 E-----------KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           +            GV PD  TY  L+ GL  E     A E++ +  +  ++      ++ 
Sbjct: 459 KSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSV 518

Query: 547 MISLCRRGHFLVATKLLRGLSS 568
           +  LC++     AT++   + S
Sbjct: 519 IHGLCKQSRLDEATQMFDSMGS 540



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M+    +P++     L   + +  + D ++ +++ +       +  S+ +++ 
Sbjct: 62  AIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMK 121

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C+  +L  A     ++ + G  P V  +++L+   C ED +  A  L+ QM    C  
Sbjct: 122 CFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM----CKP 177

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+  L++     G +  A+ L   MLE G+ P+  TY ++++G+C+  +  +A  + 
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 237

Query: 529 NK--SVNH---DVMLARSILSTFMIS-LCRRGHFLVATKLLR 564
            K   V+H   +V++      T MI+  C  G +  A +LL+
Sbjct: 238 RKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 142/362 (39%), Gaps = 42/362 (11%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVK--------FNCEDIGPEIC--NSLLAVLASD 167
           D  + R IIPS I   +    F   N +            +   P+I   N+L+A     
Sbjct: 315 DEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRA 374

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +D+ +K+  EM+  G+  +TI +   I  FC+   L     +L E+    + +    V
Sbjct: 375 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVS--SGVCPNVV 432

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               ++ G C   ++++A ++   +  ++ K D  A    +  F                
Sbjct: 433 TCNTLLDGLCDNGKLKDALEMFKAM--QKSKMDIDA----SHPFN--------------- 471

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSI 344
              GV P    Y   I GLI E +  EA+EL E +       D    N++I  +   S +
Sbjct: 472 ---GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRL 528

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A   F+ M  K   P + T + L    CK  + D+ +E++  +       +  +Y 
Sbjct: 529 D--EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 586

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            ++      G +  A  + QEM   G+ PD ++  N L     +E+L R    L D   +
Sbjct: 587 TLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMS 646

Query: 464 SG 465
            G
Sbjct: 647 VG 648



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 102/233 (43%), Gaps = 13/233 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++        +NA   +L+++  + +  +      ++  L      + A  +F  
Sbjct: 397 ITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 456

Query: 145 VK-----------FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++           FN  +   +  N L++ L ++G    A ++++EM HRG+   TI + 
Sbjct: 457 MQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYN 516

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I   C+ ++L +   M D +  +  S     V    +I+G+CK  RV++  ++  E+ 
Sbjct: 517 SVIHGLCKQSRLDEATQMFDSMGSK--SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 574

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            R    + I Y  +   F+ +G++     + ++    GV P T   R  + GL
Sbjct: 575 RRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L +A  +  +M R    P V  +  LM    R   L     L  +M       N  ++ I
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+  F    ++  AL  F  + + G  P   T+++LL GLC E  +  A ++F++    +
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPN 178

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           V+      +T M  LCR G  + A  LL  +  D
Sbjct: 179 VV----TFTTLMNGLCREGRVVEAVALLDRMLED 208


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 184/401 (45%), Gaps = 9/401 (2%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G I  AL   D++   G     + +G  I   C   K+G+  + L+ +R+ +  ++   V
Sbjct: 277 GQIHQALHFHDKVIAMGFHLDQVSYGTLINGLC---KVGETKAALELLRRNDGKLVQPDV 333

Query: 228 IAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           +    II G CK K V +AF +  E   +   PD   Y  +   F ++G + +   +  K
Sbjct: 334 VMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNK 393

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSS 343
                + P    +   + G   +  I EAK +  +++      D    ++L+     V+ 
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           ++   +I  FN M  +G    + + + +    CK    DE ++++K +     F D+ +Y
Sbjct: 454 VNKAESI--FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITY 511

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++  LC SGR+  A  ++ EM  +G  PD+  YNS+++A C++  +  A  L  ++  
Sbjct: 512 SSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKG 571

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   ++ TY IL+    + G++E A ++F ++L KG   D   YT +++G C +     
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDE 631

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A  + +K   +  +         ++SL  +    +A KLLR
Sbjct: 632 ALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLR 672



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/494 (22%), Positives = 216/494 (43%), Gaps = 73/494 (14%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD------ 213
           +L  L    +    L +  +M  +G++ + +   + I  FC+   +    S+L       
Sbjct: 116 ILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNILINSFCQLGLIPFAFSVLTRGVYWI 175

Query: 214 EVRK----RENSMINGSVIAVLII-----HGFCKGKRVEEAFKVLDELRIR-ECKPDFIA 263
           E+ K    R+N      +  +++I       F K       F VL   +I  E    FI 
Sbjct: 176 EILKDCFDRKNLEDFKRLCWIVLILWDFKRLFLKDFLQSRLFNVLHSFKILIEYHKTFIK 235

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
            + + + F++       E    K  K G  P T     FI G  ++ +I +A    + ++
Sbjct: 236 QKCLLKSFEI-----SIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVI 290

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSA----------------IVFFNFMIE--------- 358
           +  F +D      LI  +  +    A                +V +N +I+         
Sbjct: 291 AMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVN 350

Query: 359 -----------KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                      K   P + T + L    C   K  + ++++  +++ +   D+ +++++V
Sbjct: 351 DAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILV 410

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G ++EA  V+  M ++ + PDV  Y+SLM+  C  + +  A+ +++ M   G +
Sbjct: 411 DGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVT 470

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+++YNI+I+ F ++  ++ A++LF  M  K + PD  TY+SL++GLC+   +  A E+
Sbjct: 471 ANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALEL 530

Query: 528 FN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVI 578
            +    +    D++   SIL     +LC++ H   A  LL     +G+  D+   +++ I
Sbjct: 531 VDEMHYRGQQPDIITYNSILD----ALCKKHHVDKAITLLTKLKGQGIRPDM---NTYTI 583

Query: 579 LLKSLADAREVEMA 592
           L+K L  + ++E A
Sbjct: 584 LVKGLCQSGKLEDA 597



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 162/384 (42%), Gaps = 9/384 (2%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           ++     I GFC   ++ +A    D++       D ++Y  +      +G       +L+
Sbjct: 263 TITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLR 322

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +     V P    Y   I G+  ++ + +A +L    VS +   D    NALI     + 
Sbjct: 323 RNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVG 382

Query: 346 P-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
             + AI  FN M  K  +P + T S L    CK     E   V  ++       D+ +Y+
Sbjct: 383 KLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYS 442

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++   C    + +A  +   M  +G+  +V  YN ++   C+  ++  A KL+ +M   
Sbjct: 443 SLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHK 502

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
               ++ TY+ LI    + G I  AL L   M  +G  PD  TY S+L+ LC++ ++  A
Sbjct: 503 QIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKA 562

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDSHVIL 579
             +  K     +    +  +  +  LC+ G    A K     L++G + D+    ++ ++
Sbjct: 563 ITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVY---AYTVM 619

Query: 580 LKSLADAREVEMAIEHIKWIQESS 603
           ++   D    + A+  +  ++E+ 
Sbjct: 620 IQGFCDKGLFDEALALLSKMEENG 643



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 107/248 (43%), Gaps = 31/248 (12%)

Query: 51  LVARVINPYLLTHHSLALGF------------FNWASQQPNFTHSPLSYHSILKSLSLSR 98
           ++ + I P ++T+ SL  G+            FN  S +   T +  SY+ ++      +
Sbjct: 429 MMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHR-GVTANVQSYNIMINGFCKIK 487

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158
            ++    + K++   +I  D   Y  +I  L +      A  + +E+ +  +       N
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           S+L  L    ++D A+ +  ++  +G+      + + +   C++ K       L++ RK 
Sbjct: 548 SILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGK-------LEDARKV 600

Query: 219 -ENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            E+ ++ G  + V    ++I GFC     +EA  +L ++    C PD   Y I+      
Sbjct: 601 FEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEII------ 654

Query: 274 MGSVFERE 281
           + S+FE++
Sbjct: 655 ILSLFEKD 662


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 216/498 (43%), Gaps = 17/498 (3%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           D   +  +I  L + K   +AFSV    V+  CE   P+    N  +  L     +D+A 
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCE---PDYVTYNVFIDGLCKAERVDDAF 62

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++  +M  +    +T+ +   +    +  +L + +++L+++ ++ NS    +    ++I 
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTY--TVVID 120

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK----KKRKL 290
           G  K  RVEEA ++  ++    C+PD   Y  + +     G   E   + K    +K   
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180

Query: 291 GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDP-RS 348
              P    Y   I GL    RI EA+++  +  V   F  D     ++I  +  +     
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEE 240

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
               F+ M  +G  P   T + L     K     +   VY+ +  +       +YN+++ 
Sbjct: 241 GCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 300

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +GR+ EAY     M+ +G    V  Y++LM+  C E  +  A +L+ +M   GC  
Sbjct: 301 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEP 360

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN-LQAAFEV 527
           NL +YNI+I      G++  A   F  +L++ + PD  T+ + L GLCQ  + +    E+
Sbjct: 361 NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVEL 420

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLAD 585
           F   V+          S  M  +CR G   VA ++ R + S     D  V   L++ L  
Sbjct: 421 FESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCI 480

Query: 586 AREVEMAIEHIKWIQESS 603
           A  V+ A+E  + ++  S
Sbjct: 481 AGRVDEALEVFRELERRS 498



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 207/490 (42%), Gaps = 43/490 (8%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  +P++    ++Y+  +  L  + +++    +LK++   K    +  Y  ++  L++  
Sbjct: 36  AGCEPDY----VTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAG 91

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A +V  ++         +    ++  L+  G ++ A ++F +M   G       + 
Sbjct: 92  RLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYT 151

Query: 194 VFIWKFCENAKLGQVLSMLDEV--RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
             I   C++ K  +  ++  E   RK   + +   V    +I G CK  R+ EA +V D+
Sbjct: 152 ALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDD 211

Query: 252 LRI-RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
             + R   PD + Y  + +    +G V E      + R  G  P    Y   I G +  +
Sbjct: 212 EAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAK 271

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            I +A  +   ++     +     N ++ G   +     A   F  M E+G V T+ T S
Sbjct: 272 MIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYS 331

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L    C        VE+++ +       ++ SYN+++  LC +G+L +AY   +++ ++
Sbjct: 332 ALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR 391

Query: 430 GLDPDVSFYNSLMEACC-REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            L PDV  +N+ +   C R D +    +L++ M + G S NL +Y+IL+      G +E 
Sbjct: 392 RLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEV 451

Query: 489 ALRLFHNMLEKGVAPD----------------------------------ATTYTSLLEG 514
           AL +F  M+ +GVAPD                                  A +Y SLL+G
Sbjct: 452 ALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDG 511

Query: 515 LCQETNLQAA 524
           L +   ++ A
Sbjct: 512 LSRCERMEEA 521



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 167/393 (42%), Gaps = 20/393 (5%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNK----ITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           Y +++K L  S +     ++ K+    K       D   Y  +I  L +     +A  VF
Sbjct: 150 YTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVF 209

Query: 143 NEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           ++       I   +   S++  L   G ++   + F EM +RG E   + +   I  F +
Sbjct: 210 DDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMK 269

Query: 202 NAKLGQVLSMLDEVRKRENSMI-NGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRE 256
                    M+ +  +    M+ +G+V++     +I+ G CK  RV EA+     +  R 
Sbjct: 270 A-------KMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG 322

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C    + Y  + + F   G+V     + ++    G  P    Y   I GL    ++ +A 
Sbjct: 323 CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAY 382

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKN 374
              E ++  +   D    NA + G    +D  S  +  F  M+ +G  P L + S L   
Sbjct: 383 FYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDG 442

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           +C+    +  +E+++ + +     D+  +N ++ +LC +GR+ EA  V +E++R+   PD
Sbjct: 443 ICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PD 501

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              Y SL++   R + +  A+ L   M   GC+
Sbjct: 502 AWSYWSLLDGLSRCERMEEARLLSFHMKLQGCA 534



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD+  +  ++   CRE  L  A  + ++   +GC  +  TYN+ I    +   ++ A +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV---------NHDVML----- 538
              M EK   P   TYT+L++GL +   L  A  V  + V          + V++     
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 539 ------ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADARE 588
                 AR I    + + CR   F V T L++GL    G  +    L K  A+AR+
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAF-VYTALIKGLCKS-GKPEEAYALYKE-ANARK 177



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           CS ++  + ++I+       ++ A  +    +  G  PD  TY   ++GLC+   +  AF
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS---DSHVILLKS 582
           ++  K      +      +  +  L + G    A  +L  +    G+S    ++ +++  
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEK-GNSPTLKTYTVVIDG 121

Query: 583 LADAREVEMA 592
           L+ A  VE A
Sbjct: 122 LSKAGRVEEA 131


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/522 (22%), Positives = 228/522 (43%), Gaps = 42/522 (8%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLS 86
            RK    L Q       R+ LS SLV  V+   L+   S  + FF WA +Q  + H+   
Sbjct: 75  GRKSQKFLRQ------FREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPV 126

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++  +         +  L+Q++ +    D  V+   +  L++      +FS+  E  
Sbjct: 127 YNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGQFLNVLVRKHCRNGSFSIALEEL 182

Query: 147 FNCEDI----GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
              +D          N L+        +D+A  +  EMS   +         F +  C+ 
Sbjct: 183 GRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKV 242

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K  + L++++       + +  +V    +I G C+    EEA   L+ +R   C P+ +
Sbjct: 243 GKWREALTLVET-----ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 297

Query: 263 AYRIVAEEFKLMGSVFEREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            Y  +     L G + ++++     VL      G  P    +   +           A +
Sbjct: 298 TYSTL-----LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 352

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF---------FNFMIEKGRVPTLSTL 368
           L + +V         V N LIGS+     + ++ F         ++ M+  G V     +
Sbjct: 353 LLKKMVKCGHMPGYVVYNILIGSICG--DKDSLNFDLLDLAEKAYSEMLAAGVVLNKINV 410

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           S+ ++ LC   K ++   V + +    +  D  +Y+ ++++LC + ++  A+ + +EMKR
Sbjct: 411 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 470

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            GL  DV  Y  ++++ C+  L+  A+K +++M   GC+ N+ TY  LI  + +  ++  
Sbjct: 471 GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSY 530

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           A  LF  ML +G  P+  TY++L++G C+   ++ A ++F +
Sbjct: 531 ANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 572



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 193/478 (40%), Gaps = 41/478 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           +S    L S G  + A  +  EM  +G    T  +   +   C  +K+     + +E+++
Sbjct: 411 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 470

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++       +++  FCK   +E+A K  +E+R   C P+ + Y  +   +     V
Sbjct: 471 --GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV 528

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLI----VER------RICEAKELGEVIVSGKF 327
                + +     G  P    Y   I G      VE+      R+C +K++ +V +  K 
Sbjct: 529 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFK- 587

Query: 328 TIDDD-------VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
             DD+          AL+ G   S     A    + M  +G  P       L   LCK  
Sbjct: 588 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 647

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE  EV   +S + +   + +Y+ ++       R   A  V+ +M      P+V  Y 
Sbjct: 648 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 707

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +++  C+      A KL   M   GC  N+ TY  +I  F  +G+IE  L L   M  K
Sbjct: 708 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 767

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFN--KSVNHDVMLA--RSILSTFMISLCRRGH 555
           GVAP+  TY  L++  C+   L  A  +    K  +     A  R ++  F         
Sbjct: 768 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF------NKE 821

Query: 556 FLVATKLLRGLSSDLGHSDS------HVILLKSLADAREVEMAIEHIKWIQESSPTML 607
           F+ +     GL  ++G  D+      + +L+ +L  A+ +EMA+  ++ +   S T++
Sbjct: 822 FIESL----GLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLV 875



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/476 (20%), Positives = 202/476 (42%), Gaps = 33/476 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L  L  + ++     + +++K   +  D   Y  ++ S  +    ++A   FNE+
Sbjct: 444 TYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 503

Query: 146 KFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +    ++G  P +    +L+        +  A ++F+ M   G   + + +   I   C+
Sbjct: 504 R----EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559

Query: 202 NAKLGQVLSMLDEV--------------RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
             ++ +   + + +              +  +NS     V    ++ GFCK  RVEEA K
Sbjct: 560 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +LD + +  C+P+ I Y  + +    +G + E + V  +  + G       Y   I    
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 679

Query: 308 -VERRICEAKELGEVI---VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            V+R+   +K L +++    +    I  ++++ L   V   D   A      M EKG  P
Sbjct: 680 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC-KVGKTD--EAYKLMQMMEEKGCQP 736

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + +        K +  +E+ + + +     +  +Y V++   C +G L  A+ ++
Sbjct: 737 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLL 796

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           +EMK+       + Y  ++E   +E +   +  L D++     +  L  Y +LI    + 
Sbjct: 797 EEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKA 854

Query: 484 GEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +E ALRL   +      +   ++TY SL+E LC    ++ AF++F++     V+
Sbjct: 855 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 910



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 158/378 (41%), Gaps = 17/378 (4%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           I + +  S+ +  +D   KQ   N    +   Y  ++    +    ++A  + + +    
Sbjct: 569 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 628

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    + ++L+  L   G +D A ++  EMS  G   +   +   I ++ +  +     
Sbjct: 629 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 688

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            +L ++   ENS     VI   +I G CK  + +EA+K++  +  + C+P+ + Y  + +
Sbjct: 689 KVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F ++G +     +L++    GVAP    YR  I        +  A  L E +    +  
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 806

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSD---E 383
                  +I   +    +  I     + E G+    P LS    L  NL K  + +    
Sbjct: 807 HTAGYRKVIEGFN----KEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 862

Query: 384 LVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           L+E     SA   DY +   +YN ++  LC + ++  A+ +  EM +KG+ P++  + SL
Sbjct: 863 LLEEVATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 919

Query: 442 MEACCREDLLRPAKKLWD 459
           ++   R   +  A  L D
Sbjct: 920 IKGLFRNSKISEALLLLD 937



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+ ST + L +   K ++ D    +++ +S  +   D  +       LC  G+ REA  +
Sbjct: 192 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 251

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++    +   PD  FY  L+   C   L   A    ++M A+ C  N+ TY+ L+     
Sbjct: 252 VET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 308

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++    R+ + M+ +G  P    + SL+   C   +   A+++  K V    M    +
Sbjct: 309 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 368

Query: 543 LSTFMISLC 551
            +  + S+C
Sbjct: 369 YNILIGSIC 377


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 8/408 (1%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +D   K+ + M  +G++ ++  +G  I   C   KL +      E+ ++   ++  +V
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTV 352

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +   +I GFCK   +  A K   E+  R+  PD + Y  +   F  +G + E   +  + 
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
              G+ P +  + E I G      + +A  +   ++    + +      LI G     D 
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            SA    + M + G  P + T +++   LCK    +E V++     A     D  +Y  +
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C SG + +A  +++EM  KGL P +  +N LM   C   +L   +KL + M A G 
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N  T+N L+ ++     ++ A  ++ +M  +GV PD  TY +L++G C+  N++ A+ 
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 652

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +F +       ++ S  S  +    +R  FL A ++       GL++D
Sbjct: 653 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P + + S +    C+  + D++ ++ +V+       +   Y  ++  LC   +L E
Sbjct: 275 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 334

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A     EM R+G+ PD   Y +L++  C+   +R A K + +M +   + ++ TY  +IS
Sbjct: 335 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 394

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F ++G++  A +LFH M  KG+ PD+ T+T L+ G C+  +++ AF V N  +      
Sbjct: 395 GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454

Query: 539 ARSILSTFMISLCRRGHFLVATKLL 563
                +T +  LC+ G    A +LL
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELL 479



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 105/487 (21%), Positives = 202/487 (41%), Gaps = 48/487 (9%)

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           HH L L       +   +T   +SY +++       +++ +  +++ +K   +  +S +Y
Sbjct: 266 HHLLLL------MELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEM 180
             II  L +     +A   F+E+    + I P+  +  +L+      G I  A K F EM
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIR--QGILPDTVVYTTLIDGFCKRGDIRAASKFFYEM 377

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             R +    + +   I  FC+   + +   +  E+  +   +   SV    +I+G+CK  
Sbjct: 378 HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTFTELINGYCKAG 435

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            +++AF+V + +    C P+ + Y  + +     G +     +L +  K+G+ P    Y 
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 301 EFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
             + GL     I EA K +GE   +G        LNA                       
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAG--------LNA----------------------- 524

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
                  T + L    CK  + D+  E+ K +        + ++NV+++  C  G L + 
Sbjct: 525 ----DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++  M  KG+ P+ + +NSL++  C  + L+ A  ++  M + G   + KTY  L+  
Sbjct: 581 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 640

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             +   ++ A  LF  M  KG +   +TY+ L++G  +      A EVF++     +   
Sbjct: 641 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700

Query: 540 RSILSTF 546
           + I   F
Sbjct: 701 KEIFDFF 707



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 4/270 (1%)

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS--ID 345
           +  G  PR  D   F   L+    + EA+ + E +++    +  D  N  +  +S     
Sbjct: 169 KDWGSDPRVFDV--FFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYK 226

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
             +AI+ F    E G    +++ + +   +C+  +  E   +  ++    Y  D+ SY+ 
Sbjct: 227 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 286

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +V+  C  G L + + +I+ MKRKGL P+   Y S++   CR   L  A++ + +M   G
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +   Y  LI  F + G+I  A + F+ M  + + PD  TYT+++ G CQ  ++  A 
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           ++F++     +       +  +   C+ GH
Sbjct: 407 KLFHEMFCKGLEPDSVTFTELINGYCKAGH 436



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 20/236 (8%)

Query: 347 RSAIVFFNFMIEKGRVPTLST----LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           R A   F  M+  G V ++ +    L+ LSK+     K+   + V++         ++ S
Sbjct: 192 REARRVFEKMLNYGLVLSVDSCNVYLTRLSKDC---YKTATAIIVFREFPEVGVCWNVAS 248

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++ F+C  GR++EA+ ++  M+ KG  PDV  Y++++   CR   L    KL + M 
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N   Y  +I     + ++  A   F  M+ +G+ PD   YT+L++G C+  +++
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368

Query: 523 AA----FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           AA    +E+ ++ +  DV+   +I+S F    C+ G  + A KL      +GL  D
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGF----CQIGDMVEAGKLFHEMFCKGLEPD 420


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 135/569 (23%), Positives = 240/569 (42%), Gaps = 61/569 (10%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           LR  +S   V ++     L    LA   F   +S +  F HS  + +++L   + +++  
Sbjct: 79  LRREISTDAVVKIFQ--CLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHR 136

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--C 157
              ++LK         D   +  +I      +  ++AF+V  E++   ED G  P +   
Sbjct: 137 EAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREME---EDFGVAPSLKTH 193

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L   G +  A+  F E   R +  S   F + I    +   + Q  S+  E   
Sbjct: 194 NLVLHGLCKSGKVLAAMDHF-EAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQE--- 249

Query: 218 RENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
              +  NG  I +     I++   K K+++EA  +++++    C P    Y  +      
Sbjct: 250 ---TTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK 306

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           MG + E   +L+K    G  P    Y   I GL  E+R  EA +L + + S    +D   
Sbjct: 307 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVC 366

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             ALI                 +++ G++P  S+                   VYK +++
Sbjct: 367 YTALIRG---------------LLQTGKIPQASS-------------------VYKTMTS 392

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D+ + + M+  L  +GR+  A  + + M+ +GL P+   Y++L+   C+   +  
Sbjct: 393 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 452

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A ++  QM  + C+ +  TYNILI    + G++E A   F  MLE G  PD  TY  L+ 
Sbjct: 453 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 512

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGH 572
           GLC+  N  AA  V +     D+  +R + S+ +  LC+ G       L   +  S + +
Sbjct: 513 GLCKAGNTDAACGVLD-----DMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVAN 567

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQE 601
           S +   L+  L  A  V+ A+     I++
Sbjct: 568 SQTRTRLIFHLCKANRVDEAVSLFNAIRK 596



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 173/414 (41%), Gaps = 15/414 (3%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           S+ ++   N  T+D   Y  I+  L + K  Q+A ++  ++  N     P I   N+LL 
Sbjct: 245 SLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITAN--GCTPTIATYNALLN 302

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G ++ A+ +  ++   G     + +   I    +  +  +   +  E+  R  ++
Sbjct: 303 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLAL 362

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +V    +I G  +  ++ +A  V   +    C PD +    + +     G +     
Sbjct: 363 --DTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 420

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           + K     G+AP    Y   I GL   R++  A E+   +     T D    N LI G  
Sbjct: 421 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 480

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            S D  +A  FF+ M+E G  P + T + L   LCK   +D    V   +S++ +     
Sbjct: 481 KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV---- 536

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y+ +V  LC SG+L     +  EM+R G+  +      L+   C+ + +  A  L++ +
Sbjct: 537 -YSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAI 594

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
              G   +   YN +IS   + G++     ++  M  +   PD  TY +LL G+
Sbjct: 595 RKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTYNALLNGM 646



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 163/382 (42%), Gaps = 13/382 (3%)

Query: 86  SYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +Y+++L  L  + R   AID +L+++  N  T D   Y  +I  L + K + +A+ +F E
Sbjct: 296 TYNALLNGLCKMGRLEEAID-LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 354

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +      +L+  L   G I  A  ++  M+  G     +     I    +  +
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 414

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G  + +   +  R   +    V+   +IHG CK ++++ A ++L +++   C PD I Y
Sbjct: 415 IGAAVRIFKSMEAR--GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 472

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+ +     G V        +  + G  P    Y   I GL        A  + + + S
Sbjct: 473 NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS 532

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
            +F     V ++L+ G   S       + F+ M E+  V    T + L  +LCK N+ DE
Sbjct: 533 SRF-----VYSSLVDGLCKSGKLEGGCMLFHEM-ERSGVANSQTRTRLIFHLCKANRVDE 586

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            V ++  +   +      +YN ++S L  SG++ E   V QEM R    PD   YN+L+ 
Sbjct: 587 AVSLFNAIR-KEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTR-WWKPDRVTYNALLN 644

Query: 444 ACCREDLLRPAKKLWDQMFASG 465
                + +  A   + +M   G
Sbjct: 645 GMIGANRMDRAHYYYLEMTGRG 666


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 169/360 (46%), Gaps = 6/360 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL---SMLDE 214
           N ++  L   G ++ A  + ++M  RGV  + I +   I  +C+  K+G++    ++L E
Sbjct: 167 NIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKE 226

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +R   + +    V   ++I GFCK K V  A KV  E+  +  KP+ + Y  +       
Sbjct: 227 MR--ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNN 284

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G V E   +  +     + P    +   + G    + + +A EL + +     T +    
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI +    +    A   +  M+ KG  P +ST + L   LC++   +    +   +  
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+ +YN+++  LC  G +++A  ++ EM RKGL P    YN++++  C+E  LR 
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRA 464

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L  QM   G   N+ TYN+LI  F +  ++E A  L + MLEKG+ P+  TY  + E
Sbjct: 465 ALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 183/379 (48%), Gaps = 8/379 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN L++ L   G I +   ++ EM  R +E + I F + I   C+  KL +   ++++++
Sbjct: 131 CNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMK 190

Query: 217 KRENSMINGSVIAV-LIIHGFCKGKRVEEAFK---VLDELRIRECKPDFIAYRIVAEEFK 272
            R    ++ +VI    +I G+CK  ++ + +K   +L E+R     P+ + + I+ + F 
Sbjct: 191 VRG---VSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFC 247

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
              +V     V  +  + GV P    Y   I GL    ++ EA  L + +V+     +  
Sbjct: 248 KDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNII 307

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             NAL+ G   +   + A   F+ M ++G  P ++T + L    CK    ++   +Y+++
Sbjct: 308 THNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM 367

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+ +YN +++ LC  G L  A  ++ EM  K L  D+  YN L+++ C +  +
Sbjct: 368 LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEM 427

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + A +L D+M   G   +  TYN +I  + + G +  AL L   M + G   +  TY  L
Sbjct: 428 KKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++G C++  L+ A  + N+
Sbjct: 488 IKGFCKKDKLEDANGLLNE 506



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVE---VYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +G    + T + L    CK  K  ++ +   + K + A+    +  ++N+++   C    
Sbjct: 192 RGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKN 251

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A  V  EM R+G+ P+V  YNSL+   C    +  A  L DQM  S    N+ T+N 
Sbjct: 252 VSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNA 311

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++ F +   ++ A  LF +M ++G+ P+ TTY  L++  C++ N++ AF ++   +   
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG 371

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
           V    S  +  +  LCR+G    A  L+  + +    +D  ++ IL+ SL +  E++ A+
Sbjct: 372 VCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGF------------FNWASQQ---PNFTHSPLSYHSI 90
           +L   +V   + P ++TH++L  GF            F+   +Q   PN T    +Y+ +
Sbjct: 292 ALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVT----TYNIL 347

Query: 91  LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150
           + +      +    ++ + +    +  D S Y  +I  L +  + + A ++ +E+     
Sbjct: 348 IDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
                  N L+  L + G +  AL++ DEM  +G++ S + +   I  +C+   L   L+
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +  ++ K    + N +   VLI  GFCK  ++E+A  +L+E+  +   P+ + Y IV EE
Sbjct: 468 LRSQMEK-VGRLANVATYNVLI-KGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEE 525

Query: 271 FKLMGSVFEREVVLKK 286
               G V + E  L K
Sbjct: 526 MMEKGFVPDIEGHLYK 541



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R R  +   +     GL   V+  N LM    +   +   + ++ +M        L ++N
Sbjct: 108 RTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFN 167

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           I+I+   +VG++  A  +  +M  +GV+ +  TY +L++G C+
Sbjct: 168 IVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCK 210


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/521 (22%), Positives = 227/521 (43%), Gaps = 40/521 (7%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLS 86
            RK    L Q       R+ LS SLV  V+   L+   S  + FF WA +Q  + H+   
Sbjct: 116 GRKSQKFLRQ------FREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPV 167

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++  +         +  L+Q++ +    D  V+   +  L++      +FS+  E  
Sbjct: 168 YNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLNVLVRKHCRNGSFSIALEEL 223

Query: 147 FNCEDI----GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
              +D          N L+        +D+A  +  EMS   +         F +  C+ 
Sbjct: 224 GRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKV 283

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K  + L++++       + +  +V    +I G C+    EEA   L+ +R   C P+ +
Sbjct: 284 GKWREALTLVET-----ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 263 AYRIVAEEFKLMGSVFEREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            Y  +     L G + ++++     VL      G  P    +   +           A +
Sbjct: 339 TYSTL-----LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 393

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRS--------AIVFFNFMIEKGRVPTLSTLS 369
           L + +V         V N LIGS+   D  S        A   ++ M+  G V     +S
Sbjct: 394 LLKKMVKCGHMPGYVVYNILIGSICG-DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVS 452

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           + ++ LC   K ++   V + +    +  D  +Y+ ++++LC + ++  A+ + +EMKR 
Sbjct: 453 SFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRG 512

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL  DV  Y  ++++ C+  L+  A+K +++M   GC+ N+ TY  LI  + +  ++  A
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 572

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             LF  ML +G  P+  TY++L++G C+   ++ A ++F +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 193/478 (40%), Gaps = 41/478 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           +S    L S G  + A  +  EM  +G    T  +   +   C  +K+     + +E+++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++       +++  FCK   +E+A K  +E+R   C P+ + Y  +   +     V
Sbjct: 512 --GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV 569

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLI----VER------RICEAKELGEVIVSGKF 327
                + +     G  P    Y   I G      VE+      R+C +K++ +V +  K 
Sbjct: 570 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFK- 628

Query: 328 TIDDD-------VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
             DD+          AL+ G   S     A    + M  +G  P       L   LCK  
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE  EV   +S + +   + +Y+ ++       R   A  V+ +M      P+V  Y 
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +++  C+      A KL   M   GC  N+ TY  +I  F  +G+IE  L L   M  K
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFN--KSVNHDVMLA--RSILSTFMISLCRRGH 555
           GVAP+  TY  L++  C+   L  A  +    K  +     A  R ++  F         
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF------NKE 862

Query: 556 FLVATKLLRGLSSDLGHSDS------HVILLKSLADAREVEMAIEHIKWIQESSPTML 607
           F+ +     GL  ++G  D+      + +L+ +L  A+ +EMA+  ++ +   S T++
Sbjct: 863 FIESL----GLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLV 916



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/476 (20%), Positives = 202/476 (42%), Gaps = 33/476 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L  L  + ++     + +++K   +  D   Y  ++ S  +    ++A   FNE+
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 544

Query: 146 KFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +    ++G  P +    +L+        +  A ++F+ M   G   + + +   I   C+
Sbjct: 545 R----EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 202 NAKLGQVLSMLDEV--------------RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
             ++ +   + + +              +  +NS     V    ++ GFCK  RVEEA K
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +LD + +  C+P+ I Y  + +    +G + E + V  +  + G       Y   I    
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 308 -VERRICEAKELGEVI---VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            V+R+   +K L +++    +    I  ++++ L   V   D   A      M EKG  P
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC-KVGKTD--EAYKLMQMMEEKGCQP 777

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + +        K +  +E+ + + +     +  +Y V++   C +G L  A+ ++
Sbjct: 778 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLL 837

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           +EMK+       + Y  ++E   +E +   +  L D++     +  L  Y +LI    + 
Sbjct: 838 EEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKA 895

Query: 484 GEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +E ALRL   +      +   ++TY SL+E LC    ++ AF++F++     V+
Sbjct: 896 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 951



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 158/378 (41%), Gaps = 17/378 (4%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           I + +  S+ +  +D   KQ   N    +   Y  ++    +    ++A  + + +    
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    + ++L+  L   G +D A ++  EMS  G   +   +   I ++ +  +     
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            +L ++   ENS     VI   +I G CK  + +EA+K++  +  + C+P+ + Y  + +
Sbjct: 730 KVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F ++G +     +L++    GVAP    YR  I        +  A  L E +    +  
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSD---E 383
                  +I   +    +  I     + E G+    P LS    L  NL K  + +    
Sbjct: 848 HTAGYRKVIEGFN----KEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 903

Query: 384 LVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           L+E     SA   DY +   +YN ++  LC + ++  A+ +  EM +KG+ P++  + SL
Sbjct: 904 LLEEVATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 960

Query: 442 MEACCREDLLRPAKKLWD 459
           ++   R   +  A  L D
Sbjct: 961 IKGLFRNSKISEALLLLD 978



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+ ST + L +   K ++ D    +++ +S  +   D  +       LC  G+ REA  +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++    +   PD  FY  L+   C   L   A    ++M A+ C  N+ TY+ L+     
Sbjct: 293 VET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++    R+ + M+ +G  P    + SL+   C   +   A+++  K V    M    +
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409

Query: 543 LSTFMISLC 551
            +  + S+C
Sbjct: 410 YNILIGSIC 418


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/525 (22%), Positives = 233/525 (44%), Gaps = 27/525 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++++L    +I    +VL ++          +Y  I+ +  +G   + A  V  ++
Sbjct: 124 TYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 183

Query: 146 KF-NCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               C  D+G   CN +L  +   G +D AL +  ++   G E   + +   +   C   
Sbjct: 184 HARGCALDVGN--CNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAK 241

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V  +++E+  R     N      LI +  C+    E   +VL ++    C PD   
Sbjct: 242 RWGCVQELMEEM-VRMACPPNIVTFNTLISY-LCRNGLFERVHEVLAQMAEHGCTPDIRM 299

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + +     G +     +L +    G+ P    Y   + GL    R  E +EL   + 
Sbjct: 300 YATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF 359

Query: 324 SGKFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
                +DD   N L+      G V  +     I     M+  G +P + T + +    CK
Sbjct: 360 DKDCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLVHGCMPDVITYTTVINGFCK 414

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE V + K ++A     +  SY +++  LC++ R  +A  ++ +M ++G   +   
Sbjct: 415 EGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPIT 474

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L+   C++ L+  A +L  QM  +GCS +L +Y+ +I    + G+ + AL L + M+
Sbjct: 475 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 534

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRR 553
            KG++P+   Y+S+   L +E  +    ++F+     ++  D +L  +++S    SLC+R
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS----SLCKR 590

Query: 554 GHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHI 596
           G    A + L  + S   + +  ++ IL++ LA    V+ A E +
Sbjct: 591 GETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 635



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/458 (20%), Positives = 201/458 (43%), Gaps = 44/458 (9%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           P+F   P  +SY+++LK L ++++   +  +++++       +   +  +I  L +    
Sbjct: 219 PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLF 278

Query: 136 QKAFSVFNEV-KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           ++   V  ++ +  C    P+I    +++  +  +G++  A ++ + M   G++ + + +
Sbjct: 279 ERVHEVLAQMAEHGCT---PDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCY 335

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              +   C   +  +   +L E+  ++  +    V   +++  FC+   V+   ++L+++
Sbjct: 336 NTLLKGLCSAERWEETEELLAEMFDKDCPL--DDVTFNILVDFFCQNGLVDRVIELLEQM 393

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            +  C PD I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R 
Sbjct: 394 LVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERW 453

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
            +A               +D+++ +I     ++P +     NF                 
Sbjct: 454 VDA---------------EDLMSQMIQQGCPLNPITFNTLINF----------------- 481

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LCK+   ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ 
Sbjct: 482 --LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMS 539

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+   Y+S+  A  RE  +    +++D +  +    +   YN +IS   + GE E A+  
Sbjct: 540 PNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEF 599

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              M+  G  P+ +TYT L+ GL  E  ++ A E+  +
Sbjct: 600 LAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTE 637



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 38/189 (20%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN MV+  C +G+L  A  +   +    + P+   Y  ++ A C    +  A  + D+M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 463 -----------------------------------ASGCSGNLKTYNILISKFSEVGEIE 487
                                              A GC+ ++   N++++   + G ++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            AL L  ++   G  PD  +Y ++L+GLC         E+  + V           +T +
Sbjct: 210 KALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 548 ISLCRRGHF 556
             LCR G F
Sbjct: 270 SYLCRNGLF 278



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN +++ +   G++E A RL   +    V P+A TY  ++  LC    +  A  V ++  
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAR 587
                    +    + + CR G F  A ++L     RG + D+G+ +   ++L ++ D  
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQG 206

Query: 588 EVEMAIEHIK 597
            V+ A+  ++
Sbjct: 207 SVDKALHLLR 216


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 209/468 (44%), Gaps = 52/468 (11%)

Query: 83  SPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           + ++Y +I+  +  +   ++A+D + K  +++ I  +  +Y  II SL +      A ++
Sbjct: 218 TQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNL 277

Query: 142 FNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F E++   + I P++   NS++    S G   +A ++  EM  R +    + +   I  F
Sbjct: 278 FTEMQE--KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  K  +   + DE+  R   +I  ++    +I GFCK  R++ A  +   +  + C P
Sbjct: 336 VKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSP 393

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + I +  + + +     + +   +L +  + G+   T  Y   I G              
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY------------ 441

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                            L+G     D  +A+     MI  G  P + T   L   LC   
Sbjct: 442 -----------------LVG-----DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 380 KSDELVEVYKVLSA-----------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           K  + +E++KV+             N    D+++YN+++S L   G+  EA  + +EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G+ PD   Y+S+++  C++  L  A +++D M +   S N+ T+  LI+ + + G ++ 
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            L LF  M  +G+  +A TY +L+ G  +  N+  A ++F + ++  V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 185/438 (42%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKL--GLHPDVVTFN 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA  +  ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y                      IV G   I D V              SA+
Sbjct: 214 GLQPTQITYG--------------------TIVDGMCKIGDTV--------------SAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A++L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ +I  F +   ++ A  +F+ M  KG +P+  T+ +L++G C    +    E+ +
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++   +  +T +      G    A  LL+     GL  D+   D+   LL  L 
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKVMQKS 494



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/476 (22%), Positives = 202/476 (42%), Gaps = 58/476 (12%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICN--SLLAVLA 165
           K+ K+ L   V  F  ++  L       +A ++F+++ +  C    P +    +L+  L 
Sbjct: 139 KITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCR---PNVVTFTTLMNGLC 195

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--NSMI 223
            +G I  A+ + D M   G++ + I +G  +   C   K+G  +S LD +RK E  + +I
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC---KIGDTVSALDLLRKMEEISHII 252

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              VI   II   CK  R  +A  +  E++ +   PD   Y  +   F   G   + E +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L++  +  ++P    Y   I   + E +  EA+EL                         
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL------------------------- 347

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    ++ M+ +G +P   T S++    CK+N+ D    ++ +++      ++ ++
Sbjct: 348 ---------YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++   C + R+ +   ++ EM   GL  D + YN+L+        L  A  L  +M +
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPDATTYTSLL 512
           SG   ++ T + L+    + G+++ AL +F  M +            GV PD  TY  L+
Sbjct: 459 SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI 518

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            GL  E     A E++ +  +  ++      S+ +  LC++     AT++   + S
Sbjct: 519 SGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 171/364 (46%), Gaps = 4/364 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++  L   G ++ A  + D+M   G   + + +   I  +C+  ++G++    D + K
Sbjct: 234 NTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA-DAILK 292

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              EN +   SV   ++I GFCK + +  A KV +E++ +  KP  + Y  +       G
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E +V+L +     + P    Y   I G   ++ + EA+EL + I     T +    N
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+ G         A +    M+EKG +P  ST + L    C+  K +E+  +   +   
Sbjct: 413 TLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCR 472

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  +YN+++S  C     ++A  +I EM  KGL P    YN L+   C E  LR A
Sbjct: 473 GVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAA 532

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L  QM   G   N+ TYN+LI  +   G++E A  L + MLEKG+ P+ TTY  + E 
Sbjct: 533 LNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEE 592

Query: 515 LCQE 518
           + ++
Sbjct: 593 MMEK 596



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 128/537 (23%), Positives = 233/537 (43%), Gaps = 52/537 (9%)

Query: 38  LHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLS 97
           LHQL     + P LV R               +FNW+ ++ N  +S      +L  L+ +
Sbjct: 76  LHQLMGSGDVDPLLVLR---------------YFNWSRRELNVNYSIELICRLLNLLANA 120

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC 157
           +    I S+L                    S ++G+       +F+ +   C   G    
Sbjct: 121 KHYPKIRSILD-------------------SFVKGETNCSISLIFHSLSV-CS--GQFCA 158

Query: 158 NSLLAVLASDGYIDNA-----LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           NS++A +    Y++N+     L+ F        + S +     +    +  + G V  + 
Sbjct: 159 NSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVY 218

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
            E+ +R+   I+ ++I    +I+G CK  ++ +A  V+D++++    P+ + Y  + + +
Sbjct: 219 KEMIRRK---ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY 275

Query: 272 KLMGSV---FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
             MG V   ++ + +LK+  +  V+P +  +   I G   +  +  A ++ E + S    
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK 335

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 N+L+ G  +      A V  + M+     P + T + L    CK+   +E  E+
Sbjct: 336 PTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEAREL 395

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  +       ++ ++N ++   C  G++ EA+ + + M  KG  P+ S YN L+   CR
Sbjct: 396 FDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCR 455

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  +   K L ++M   G   +  TYNILIS + E  E + A RL   ML+KG+ P   T
Sbjct: 456 EGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLT 515

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLL 563
           Y  LL G C E NL+AA  +  K +  +   A  +    +I   CR+G    A  LL
Sbjct: 516 YNILLNGYCMEGNLRAALNL-RKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLL 571



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 23/365 (6%)

Query: 226 SVIAVLIIHGFCKGKRVE---EAFKVLDELRIR----ECKPDFIAYRIVAEEFKLMGSVF 278
           S+IA +++  + +  +     EAFK   + R +     C P  ++  +   EF   G V 
Sbjct: 160 SIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNP-LLSALVKENEF---GGV- 214

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
             E V K+  +  ++P    +   I GL    ++ +A ++ + +    F  +    N LI
Sbjct: 215 --EFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLI 272

Query: 339 ------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                 G V  +    AI+    M+E    P   T + L    CK       ++V++ + 
Sbjct: 273 DGYCKMGRVGKMYKADAIL--KEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQ 330

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           +      + +YN +V+ LC  G+L EA  ++ EM    L P+V  YN+L+   C++ LL 
Sbjct: 331 SQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLE 390

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++L+D +   G + N+ T+N L+  + + G++E A  L   MLEKG  P+A+TY  L+
Sbjct: 391 EARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            G C+E  ++    + N+     V       +  + + C +     A +L+  +  D G 
Sbjct: 451 VGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM-LDKGL 509

Query: 573 SDSHV 577
             SH+
Sbjct: 510 KPSHL 514



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 164/365 (44%), Gaps = 10/365 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFS 140
           +++++++  L    ++N    V+  +KV     +   Y  +I    +    GK   KA +
Sbjct: 231 ITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGK-MYKADA 289

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +  E+  N         N L+     D  +  ALK+F+EM  +G++ + + +   +   C
Sbjct: 290 ILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC 349

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              KL +   +LDE+    +S +  +VI    +I+G+CK K +EEA ++ D +  +   P
Sbjct: 350 NEGKLNEAKVLLDEML---SSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + I +  +   +   G + E  ++ K   + G  P  + Y   I+G   E ++ E K L 
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLL 466

Query: 320 EVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             +       D    N LI +     +P+ A    + M++KG  P+  T + L    C  
Sbjct: 467 NEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCME 526

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                 + + K +     + ++ +YNV++   C  G+L +A G++ EM  KGL P+ + Y
Sbjct: 527 GNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586

Query: 439 NSLME 443
             + E
Sbjct: 587 EIIKE 591



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 186/425 (43%), Gaps = 41/425 (9%)

Query: 31  TPLLEQTL--HQLGLRDSLSPSLVARVINPYLLTHHSL-----ALGFFNWASQQPN---- 79
            PLL   +  ++ G  + +   ++ R I+P L+T +++      +G  N A    +    
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 80  --FTHSPLSYHSILKSLSLSRQINAI---DSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
             F  + ++Y++++       ++  +   D++LK++  NK++ +S  +  +I    + +N
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 135 TQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
              A  VF E++   + + P +   NSL+  L ++G ++ A  + DEM    ++ + I +
Sbjct: 319 LSAALKVFEEMQ--SQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITY 376

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I  +C+   L +   + D + K+   +    +    ++HG+CK  ++EEAF +   +
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQ--GLTPNVITFNTLLHGYCKFGKMEEAFLLQKVM 434

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             +   P+   Y  +   F   G + E + +L + +  GV   T  Y   I     ++  
Sbjct: 435 LEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEP 494

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A  L + ++           N L+ G     + R+A+     M ++GR   + T + L
Sbjct: 495 KKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVL 554

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI-QEMKRKG 430
            +  C++ K ++         AN    +M    ++ +        R  Y +I +EM  KG
Sbjct: 555 IQGYCRKGKLED---------ANGLLNEMLEKGLIPN--------RTTYEIIKEEMMEKG 597

Query: 431 LDPDV 435
             PD+
Sbjct: 598 FLPDI 602


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 213/508 (41%), Gaps = 66/508 (12%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWAS--------------QQPNFTHSPLSYHSILKSLS 95
           ++V +  NP ++    L  GFF   +               QP+      +Y++++    
Sbjct: 114 TMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDV----FAYNALINGFC 169

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGP 154
              +I+    VL +++    + D+  Y  +I SL        A  V N++   NC+   P
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ---P 226

Query: 155 EICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
            +    + + A+  +G +D ALK+ DEM  RG++     +                    
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT------------------ 268

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                              II G CK   V+ AF+++  L ++  +PD I+Y I+     
Sbjct: 269 -------------------IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALL 309

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G   E E ++ K       P    Y   I  L  + +I EA  L +++     T D  
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 333 VLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             + LI +      +D   AI F   MI  G +P +   + +   LCK  K+D+ +E++ 
Sbjct: 370 SYDPLIAAFCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            L       +  SYN M S L +SG    A  +I EM   G+DPD   YNS++   CRE 
Sbjct: 428 KLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
           ++  A +L   M +     ++ TYNI++  F +   IE A+ +  +M+  G  P+ TTYT
Sbjct: 488 MVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYT 547

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            L+EG+        A E+ N  V  D +
Sbjct: 548 VLIEGIGFAGYRAEAMELANDLVRIDAI 575



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 184/376 (48%), Gaps = 25/376 (6%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER---EVVLKKKR 288
           +I+GFCK  R+++A +VLD +R ++  PD + Y I      ++GS+  R   ++ LK   
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI------MIGSLCSRGKLDLALKVLN 217

Query: 289 KL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SS 343
           +L      P    Y   I   ++E  + EA +L + ++S     D    N +I  +    
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +  R+  +  N  + KG  P + + + L + L  + K +E  ++   + +     ++ +Y
Sbjct: 278 MVDRAFEMVRNLEL-KGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +++++ LC  G++ EA  +++ MK KGL PD   Y+ L+ A CRE  L  A +  + M +
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN--- 520
            GC  ++  YN +++   + G+ + AL +F  + E G +P++++Y ++   L    +   
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 521 -LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHV 577
            L    E+ +  ++ D +   S++S     LCR G    A +LL  + S   H    ++ 
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISC----LCREGMVDEAFELLVDMRSCEFHPSVVTYN 512

Query: 578 ILLKSLADAREVEMAI 593
           I+L     A  +E AI
Sbjct: 513 IVLLGFCKAHRIEDAI 528



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 2/324 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I H  C+     E+  +L+ +  +   PD I    + + F  + ++ +   V++   K G
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
             P    Y   I G     RI +A  + + + S  F+ D    N +IGS+ S      A+
Sbjct: 155 -QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              N ++     PT+ T + L +        DE +++   + +     DM +YN ++  +
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G +  A+ +++ ++ KG +PDV  YN L+ A   +      +KL  +MF+  C  N+
Sbjct: 274 CKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNV 333

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ILI+     G+IE A+ L   M EKG+ PDA +Y  L+   C+E  L  A E    
Sbjct: 334 VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET 393

Query: 531 SVNHDVMLARSILSTFMISLCRRG 554
            ++   +      +T + +LC+ G
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNG 417



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + E+  K   PDV  YN+L+   C+ + +  A ++ D+M +   S +  TYNI+I     
Sbjct: 146 VMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G+++ AL++ + +L     P   TYT L+E    E  +  A ++ ++ ++  +      
Sbjct: 206 RGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFT 265

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            +T +  +C+ G    A +++R L       D  S+ ILL++L +  + E
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWE 315



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/366 (16%), Positives = 150/366 (40%), Gaps = 15/366 (4%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++Y  ++++  L   ++    ++ ++    +  D   Y  II  + +     +A
Sbjct: 223 NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRA 282

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           F +   ++    +  P++   N LL  L + G  +   K+  +M     + + + + + I
Sbjct: 283 FEMVRNLELKGSE--PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C + K+ + +++L  ++  E  +   +     +I  FC+  R++ A + L+ +    
Sbjct: 341 TTLCRDGKIEEAMNLLKLMK--EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD + Y  V       G   +   +  K  ++G +P ++ Y      L        A 
Sbjct: 399 CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRAL 458

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV--FFNFMIEKGRV---PTLSTLSNL 371
            +   ++S     D+   N++I  +     R  +V   F  +++       P++ T + +
Sbjct: 459 HMILEMMSNGIDPDEITYNSMISCLC----REGMVDEAFELLVDMRSCEFHPSVVTYNIV 514

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
               CK ++ ++ + V + +  N    +  +Y V++  +  +G   EA  +  ++ R   
Sbjct: 515 LLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDA 574

Query: 432 DPDVSF 437
             + SF
Sbjct: 575 ISEYSF 580


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 142/578 (24%), Positives = 237/578 (41%), Gaps = 70/578 (12%)

Query: 47  LSPSLVARVIN-PYLLTHHSLALGFFNWASQQ-PNFTHSP-----------LSYHSILKS 93
           L+P LV  +++   L++  ++ + FF WA    P F H+             S+     +
Sbjct: 48  LTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSDA 107

Query: 94  LSLSRQINAID-------SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
            SL     A D       S+L+    +K  LD++     I + +Q      AF +F ++K
Sbjct: 108 KSLLLGFIATDRRHDLHLSILRLTSPSKALLDTA-----IGAYVQSGQPHHAFQIFKKMK 162

Query: 147 FNCEDIGPEI--CNSLLAVLA---SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
                + P +  CN+LL  L    S   +  + + F++    G+  +   F + I+ +C 
Sbjct: 163 R--LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCL 220

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             K    +  L+ + K   S  N  V    I+   CK  R+ +A  +L +++ R   P+ 
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDN--VTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNR 278

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y I+   +  MG + E   V++   +  + P    Y   I GL  E RI EA +L + 
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDE 338

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + + K   D    N LI G +       A      M EKG  P   T + + K  CK  K
Sbjct: 339 MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGK 398

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D+       +  + +  D  +YN +++  C +G + EA+  + EM RK +  D    N+
Sbjct: 399 MDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT 458

Query: 441 LMEACCREDLLRPAKKL-----------------------------------WDQMFASG 465
           ++   CRE  L  A KL                                   WD+M    
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +  TYN +I    + G+ E A+   + +LE G+ PD TTY ++L G C+E +++ AF
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  NK V +         +  +  LC  G    A KL 
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLF 616



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 197/475 (41%), Gaps = 30/475 (6%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           +V++ +  N +  D   Y  +I  L      ++AF + +E++ N + + P++   N+L+ 
Sbjct: 299 NVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME-NLK-LLPDVVSYNTLIN 356

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                  I  A K+ +EMS +GV+ + +   + +  +C+  K+    + +   +  E+  
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTI--TKMEESGF 414

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
               V    +I+G+CK   + EAF+ +DE+  +  K D +    +         + E   
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L   RK G       Y   I+G   +  +  A +L + +   +        N +IG + 
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 343 SI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  AI   N ++E G +P  +T + +    C+    ++  + +  +  N +  D+ 
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF 594

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           + N+++  LC  G L +A  +      KG   D   YN+L+ + C+E  L  A  L  +M
Sbjct: 595 TCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM 654

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD----------------- 504
                  +  TYN +I+  ++ G I  A      MLEKG  PD                 
Sbjct: 655 EEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETS 714

Query: 505 ------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
                 +  Y+  ++ LC E   + A  +F +S    + + +S     M  L +R
Sbjct: 715 EESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKR 769



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 6/180 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y+ I+  L    +     S L ++  + +  D + Y  I+    +  + +KAF   
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           N++  N     P++  CN LL  L  +G ++ ALK+F+    +G    T+ +   I   C
Sbjct: 582 NKMVEN--SFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLC 639

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +  +L    ++L E+ ++E    + +  A  II       R+ EA + + ++  +   PD
Sbjct: 640 KEGRLDDAFNLLSEMEEKELGPDHYTYNA--IITALTDSGRIREAEEFMSKMLEKGNLPD 697


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 200/444 (45%), Gaps = 13/444 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            QPN      +++++++ L +  +I  +  +  ++       +   Y  +I  L +  +T
Sbjct: 125 HQPNIA----TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 180

Query: 136 QKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             A  +   + + NC+   P++    S++  L  D  +  A  +F EM H+G+  S   +
Sbjct: 181 SAAIRLLRSMEQGNCQ---PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTY 237

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I   C   +   V ++L+E+   +  ++   VI   ++   CK  +V EA  V+D +
Sbjct: 238 NSLIHALCNLCEWKHVTALLNEMVNSK--IMPNVVIFSTVVDALCKEGKVMEAHDVVDMM 295

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R  +P+ + Y  + +   L   + E   V       G AP    Y   I G    +RI
Sbjct: 296 IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 355

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A  L E +   +   +    + L+  +  +   + AI  F+ M+ +G++P   +   L
Sbjct: 356 EKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCIL 415

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK  + DE + + K +  ++   D++ Y +++  +C +G L  A  +   +  KGL
Sbjct: 416 LDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 475

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+V  Y  ++   C++ LL  A KL+ +M   G S N  TYN++   F    E    ++
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 535

Query: 492 LFHNMLEKGVAPDATTYTSLLEGL 515
           L   ML +G + D +T T L+E L
Sbjct: 536 LLQEMLARGFSADVSTSTVLVEML 559



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 178/430 (41%), Gaps = 9/430 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  +    +    L +  +M   G+  +     + I  FC   +LG   S+L ++ K  
Sbjct: 65  LLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLG 124

Query: 220 NSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +       IA    +I G C   ++ E   + D++     +P+ + Y  +      +GS 
Sbjct: 125 HQ----PNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 180

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L+   +    P    Y   I  L  +R++ +A  L   ++    +      N+L
Sbjct: 181 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSL 240

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I ++ ++ + +      N M+    +P +   S +   LCK  K  E  +V  ++     
Sbjct: 241 IHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 300

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YN ++   C    + EA  V   M  KG  PDV  Y++L+   C+   +  A  
Sbjct: 301 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY 360

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++M       N  TY+ L+     VG ++ A+ LFH M+ +G  PD  +Y  LL+ LC
Sbjct: 361 LFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLC 420

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
           +   L  A  +       ++     I +  +  +CR G    A  L   LSS   H +  
Sbjct: 421 KNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVW 480

Query: 575 SHVILLKSLA 584
           ++ I++  L 
Sbjct: 481 TYTIMINGLC 490



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 107/215 (49%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+     P+++  + L  ++ K      ++ +   + +     ++ + N++++
Sbjct: 43  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 102

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   RL  A+ V+ ++ + G  P+++ +N+L+   C E  +     L+D+M   G   
Sbjct: 103 SFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQP 162

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI+   +VG    A+RL  +M +    PD   YTS+++ LC++  +  AF +F
Sbjct: 163 NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLF 222

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++ ++  +  +    ++ + +LC    +   T LL
Sbjct: 223 SEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALL 257



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 22/227 (9%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L +A      M      P ++ +  L+ +  +         L  QM + G   N+ T NI
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+ F  +  +  A  +   +L+ G  P+  T+ +L+ GLC E  +     +F+K +   
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA----REVEM 591
                    T +  LC+ G    A +LLR  S + G+    V++  S+ D+    R+V  
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLR--SMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           A          S  + Q IS  +F   S          L+HAL   C
Sbjct: 218 AFNLF------SEMIHQGISPSIFTYNS----------LIHALCNLC 248


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 223/505 (44%), Gaps = 34/505 (6%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
            R+ LS SLV  V+   L+   S  + FF WA +Q  + H+   Y++++  +        
Sbjct: 126 FREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKV 183

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI----GPEICN 158
            +  L+Q++ +    D  V+   +  L++      +FS+  E     +D          N
Sbjct: 184 PEEFLQQIRDD----DKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYN 239

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
            L+        +D+A  +  EMS   +         F +  C+  K  + L++++     
Sbjct: 240 CLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET---- 295

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
             + +  +V    +I G C+    EEA   L+ +R   C P+ + Y  +     L G + 
Sbjct: 296 -ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL-----LCGCLN 349

Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           ++++     VL      G  P    +   +           A +L + +V         V
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409

Query: 334 LNALIGSVSSIDPRS--------AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            N LIGS+   D  S        A   ++ M+  G V     +S+ ++ LC   K ++  
Sbjct: 410 YNILIGSICG-DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 468

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            V + +    +  D  +Y+ ++++LC + ++  A+ + +EMKR GL  DV  Y  ++++ 
Sbjct: 469 SVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSF 528

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+  L+  A+K +++M   GC+ N+ TY  LI  + +  ++  A  LF  ML +G  P+ 
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNI 588

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TY++L++G C+   ++ A ++F +
Sbjct: 589 VTYSALIDGHCKAGQVEKACQIFER 613



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 193/478 (40%), Gaps = 41/478 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           +S    L S G  + A  +  EM  +G    T  +   +   C  +K+     + +E+++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++       +++  FCK   +E+A K  +E+R   C P+ + Y  +   +     V
Sbjct: 512 --GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV 569

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLI----VER------RICEAKELGEVIVSGKF 327
                + +     G  P    Y   I G      VE+      R+C +K++ +V +  K 
Sbjct: 570 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFK- 628

Query: 328 TIDDD-------VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
             DD+          AL+ G   S     A    + M  +G  P       L   LCK  
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE  EV   +S + +   + +Y+ ++       R   A  V+ +M      P+V  Y 
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +++  C+      A KL   M   GC  N+ TY  +I  F  +G+IE  L L   M  K
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFN--KSVNHDVMLA--RSILSTFMISLCRRGH 555
           GVAP+  TY  L++  C+   L  A  +    K  +     A  R ++  F         
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF------NKE 862

Query: 556 FLVATKLLRGLSSDLGHSDS------HVILLKSLADAREVEMAIEHIKWIQESSPTML 607
           F+ +     GL  ++G  D+      + +L+ +L  A+ +EMA+  ++ +   S T++
Sbjct: 863 FIESL----GLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLV 916



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/476 (20%), Positives = 202/476 (42%), Gaps = 33/476 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L  L  + ++     + +++K   +  D   Y  ++ S  +    ++A   FNE+
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 544

Query: 146 KFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +    ++G  P +    +L+        +  A ++F+ M   G   + + +   I   C+
Sbjct: 545 R----EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 202 NAKLGQVLSMLDEV--------------RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
             ++ +   + + +              +  +NS     V    ++ GFCK  RVEEA K
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +LD + +  C+P+ I Y  + +    +G + E + V  +  + G       Y   I    
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 308 -VERRICEAKELGEVI---VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            V+R+   +K L +++    +    I  ++++ L   V   D   A      M EKG  P
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC-KVGKTD--EAYKLMQMMEEKGCQP 777

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + +        K +  +E+ + + +     +  +Y V++   C +G L  A+ ++
Sbjct: 778 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLL 837

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           +EMK+       + Y  ++E   +E +   +  L D++     +  L  Y +LI    + 
Sbjct: 838 EEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKA 895

Query: 484 GEIEGALRLFHNM--LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +E ALRL   +      +   ++TY SL+E LC    ++ AF++F++     V+
Sbjct: 896 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 951



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 158/378 (41%), Gaps = 17/378 (4%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           I + +  S+ +  +D   KQ   N    +   Y  ++    +    ++A  + + +    
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    + ++L+  L   G +D A ++  EMS  G   +   +   I ++ +  +     
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            +L ++   ENS     VI   +I G CK  + +EA+K++  +  + C+P+ + Y  + +
Sbjct: 730 KVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F ++G +     +L++    GVAP    YR  I        +  A  L E +    +  
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSD---E 383
                  +I   +    +  I     + E G+    P LS    L  NL K  + +    
Sbjct: 848 HTAGYRKVIEGFN----KEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 903

Query: 384 LVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           L+E     SA   DY +   +YN ++  LC + ++  A+ +  EM +KG+ P++  + SL
Sbjct: 904 LLEEVATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 960

Query: 442 MEACCREDLLRPAKKLWD 459
           ++   R   +  A  L D
Sbjct: 961 IKGLFRNSKISEALLLLD 978



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P+ ST + L +   K ++ D    +++ +S  +   D  +       LC  G+ REA  +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++    +   PD  FY  L+   C   L   A    ++M A+ C  N+ TY+ L+     
Sbjct: 293 VET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++    R+ + M+ +G  P    + SL+   C   +   A+++  K V    M    +
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409

Query: 543 LSTFMISLC 551
            +  + S+C
Sbjct: 410 YNILIGSIC 418



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIG-PEICNSLLAVLASDGYIDNALKMF 177
           SVYR +I +LI+ +  + A  +  EV  F+   +      NSL+  L     ++ A ++F
Sbjct: 883 SVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLF 942

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
            EM+ +GV      F   I     N+K+ + L +LD +   E
Sbjct: 943 SEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHME 984


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 202/447 (45%), Gaps = 19/447 (4%)

Query: 100 INAIDSVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-- 156
           I  +DS+  K +K   +T +S     ++  L + +   KA  VF  +   C  + P++  
Sbjct: 212 IALVDSMANKGLKPGIVTFNS-----VLKGLCKHRRFDKAKEVFRAMD-QCS-VAPDVRS 264

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            N L+      G ++ A+K + EM  RGV    + F   I  F    K+    + L E++
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMK 324

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                ++   VI  ++I GFC+   + EA +V DE+    C PD + Y  +         
Sbjct: 325 GL--GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + + E +L + ++ GV P    +   I G   +    +A +L + ++  +   D    N+
Sbjct: 383 LLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNS 442

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G     D   A   ++ M  +   P   T S L  + C++ + +E       + +  
Sbjct: 443 LIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKG 502

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ +YN ++   C SG +++    +Q+M +  + PD+  +N+L+    +E+ +  A 
Sbjct: 503 NLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAF 562

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            +++ M       +  TYN++I+ FSE G +E A R+F  M   G+ PD  TY SL+ G 
Sbjct: 563 NVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGH 622

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSI 542
               N + AF++      HD M+ R  
Sbjct: 623 VTAGNSKEAFQL------HDEMMHRGF 643



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 188/430 (43%), Gaps = 47/430 (10%)

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDG 168
           +VN  TL+  V+     S  +     KA +V +E++  C  + P++   N L+      G
Sbjct: 154 EVNAYTLNIMVH-----SYCKSLEFDKADTVISEMEKRC--VFPDVVTHNVLIDARFRAG 206

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            +D A+ + D M+++G++   + F   +   C++ +  +   +    R  +   +   V 
Sbjct: 207 DVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVF---RAMDQCSVAPDVR 263

Query: 229 AV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +  ++I GFC+   VEEA K   E++ R   PD +++  +   F   G +      L++ 
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           + LG+ P    Y   I G       C A  + E +      + D+               
Sbjct: 324 KGLGLVPDGVIYTMVIGGF------CRAGSMSEAL-----RVRDE--------------- 357

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                   M+  G +P + T + L   LCK+++  +  E+   +       D+ ++  ++
Sbjct: 358 --------MVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLI 409

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G   +A  +   +  + L PDV  YNSL++  CR+  L  A +LWD M A    
Sbjct: 410 HGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF 469

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY+ILI    E G++E A      M+ KG  P+  TY S+++G C+  N++   + 
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF 529

Query: 528 FNKSVNHDVM 537
             K +  +++
Sbjct: 530 LQKMMQDNIL 539



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           +S +N   + +++ H +CK    ++A  V+ E+  R   PD + + ++ +     G V  
Sbjct: 152 DSEVNAYTLNIMV-HSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDA 210

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              ++      G+ P    +   + GL   RR  +AKE+   +       D    N LIG
Sbjct: 211 AIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIG 270

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               + +   A+ F+  M ++G  P + + S L      R K D      + +       
Sbjct: 271 GFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVP 330

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   Y +++   C +G + EA  V  EM   G  PDV  YN+L+   C++  L  A++L 
Sbjct: 331 DGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELL 390

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G + +L T+  LI  +   G  E AL+LF  +L + + PD   Y SL++G+C++
Sbjct: 391 NEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRK 450

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            +L  A E+++     ++       S  + S C +G 
Sbjct: 451 GDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQ 487



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 154/367 (41%), Gaps = 11/367 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QQ   T   +S+  ++   S   +++   + L+++K   +  D  +Y  +I    +  + 
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 136 QKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            +A  V +E V   C    P++   N+LL  L     + +A ++ +EM  RGV      F
Sbjct: 349 SEALRVRDEMVGLGCL---PDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTF 405

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDE 251
              I  +C +    + L + D +  +    +   V+A   +I G C+   + +A ++ D+
Sbjct: 406 TTLIHGYCRDGNFEKALQLFDTLLHQR---LRPDVVAYNSLIDGMCRKGDLAKANELWDD 462

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  RE  P+ + Y I+ +     G V E    L +    G  P    Y   I G      
Sbjct: 463 MHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGN 522

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + + ++  + ++      D    N LI G +   +   A   FN M ++   P   T + 
Sbjct: 523 VKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNM 582

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +     ++   +E   V+K + A+    D  +Y  +++   T+G  +EA+ +  EM  +G
Sbjct: 583 IINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRG 642

Query: 431 LDPDVSF 437
             PD  F
Sbjct: 643 FAPDDKF 649



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 2/154 (1%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A++ +  + +S    N  T NI++  + +  E + A  +   M ++ V PD  T+  L++
Sbjct: 141 AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLID 200

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
              +  ++ AA  + +   N  +       ++ +  LC+   F  A ++ R +       
Sbjct: 201 ARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAP 260

Query: 574 D--SHVILLKSLADAREVEMAIEHIKWIQESSPT 605
           D  S  IL+       EVE A++  K +Q+   T
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVT 294


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 219/488 (44%), Gaps = 5/488 (1%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T     ++ IL SL  S+  + +  + ++++   I  +      +I    Q      A
Sbjct: 80  NTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFA 139

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           FSVF ++             +L+  L   G I  A    D++   G  F  I +G  I  
Sbjct: 140 FSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHG 199

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
            C   K+G+  + LD +++ + +++  +V+    II   CK K V EAF +  E+  +  
Sbjct: 200 LC---KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGI 256

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD + Y  +   F ++G + +   +  K     + P    +   +     + ++ E K 
Sbjct: 257 SPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKT 316

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + ++++      +    N+L+     + +   A   FN M + G  P + + S +    C
Sbjct: 317 VFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC 376

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  K DE + ++K +   +   D+ +Y+ ++  L  SGR+  A  ++ +M  +G+ P + 
Sbjct: 377 KIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIR 436

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YNS+++A C+   +  A  L  ++   G   N+ TY+ILI    + G++E A ++F  +
Sbjct: 437 TYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGL 496

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L KG   +  TYT +++G C E     A  + +K  ++  +         ++SL ++   
Sbjct: 497 LVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEN 556

Query: 557 LVATKLLR 564
            +A KLLR
Sbjct: 557 DMAEKLLR 564



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 216/469 (46%), Gaps = 22/469 (4%)

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           KNT      FN + ++   I     +S      S+  +D+A+ +F+ +  R        F
Sbjct: 34  KNTH-----FNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEF 88

Query: 193 GVFIWKFCENAKLGQVLSMLD--EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
              +    ++     VL +    E R  + +++N +++    I+ FC+   +  AF V  
Sbjct: 89  NKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL----INCFCQLGLIPFAFSVFA 144

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++      PD I +  + +   L G + +  +   K   LG       Y   I GL    
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC--- 201

Query: 311 RICEAKELGEVI--VSGKFTIDDDVL-NALIGSVSSID-PRSAIVFFNFMIEKGRVPTLS 366
           ++ E +   +++  V G     + V+ N +I S+  +     A   F+ MI KG  P + 
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVV 261

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T S L    C   K ++ ++++  +   +   D+ ++N++V+  C  G+++E   V   M
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
            ++G+ P+   YNSLM+  C    +  AK +++ M   G + ++++Y+I+I+ F ++ + 
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ LF  M  K + PD  TY+SL++GL +   +  A ++ ++  +  V       ++ 
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSI 441

Query: 547 MISLCRRGHFLVATKLLRGLSSDLG---HSDSHVILLKSLADAREVEMA 592
           + +LC+      A  LL  L  D G   +  ++ IL+K L  + ++E A
Sbjct: 442 LDALCKIHQVDKAIALLTKL-KDKGIQPNMYTYSILIKGLCQSGKLEDA 489



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 189/420 (45%), Gaps = 3/420 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +++ +++K L L  QI        +V       D   Y  +I  L +   T+ A  +   
Sbjct: 156 ITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQR 215

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           V  N       + N+++  +     ++ A  +F EM  +G+    + +   I  FC   K
Sbjct: 216 VDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGK 275

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + + +++   EN   +     +L+ + FCK  +++E   V D +  +  KP+F+ Y
Sbjct: 276 LNDAIDLFNKMI-LENIKPDVYTFNILV-NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + + L+  V + + +     + GV P    Y   I G    ++  EA  L + +  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 325 GKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D    ++LI  +S     S A+   + M ++G  PT+ T +++   LCK ++ D+
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDK 453

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + +   L       +M +Y++++  LC SG+L +A  V + +  KG + +V  Y  +++
Sbjct: 454 AIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQ 513

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C E L   A  L  +M  +GC  + KTY I+I    +  E + A +L   M+ +GV P
Sbjct: 514 GFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 230/503 (45%), Gaps = 34/503 (6%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVL-KQVKVNKITLDSSVYRF 124
           L L +F W+ ++   +HS      IL SL+ +++ + I S L K VK  K    S+++  
Sbjct: 14  LILRYFTWSQKEFKLSHSLELTFRILNSLAHTKKYSKIRSFLDKFVKYEKDYSVSAIFHA 73

Query: 125 I-----------------IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI----CNSLLAV 163
           I                 + + ++     + F  F        D G ++    CN LL+ 
Sbjct: 74  ISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAG----DYGFKLSLISCNPLLSG 129

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L  +    +   ++ EM  R +E + I F + +   C+  KL +   ++++++      +
Sbjct: 130 LVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWG---V 186

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFK---VLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           + +VI    +I G+CK  R+ + +K   +L E+  +   P+ + Y I+ + F    +V  
Sbjct: 187 SPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSG 246

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              V  + ++ G+ P    Y   I GL  + ++ EA  L + +VS     +    N LI 
Sbjct: 247 AMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLIN 306

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   +     AI  FN M ++G  P   T + L    CK  + ++   +Y ++     F 
Sbjct: 307 GFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFP 366

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +YN +++ LC  G ++ A  ++ EM  K L  DV  YN L+++ C++   R A KL 
Sbjct: 367 EVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLL 426

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D+MF  G + +  TYN L+  +   G +  AL +   M  KG   +  T+  L++G C +
Sbjct: 427 DEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLK 486

Query: 519 TNLQAAFEVFNKSVNHDVMLARS 541
             L+ A  + N+ +   ++  R+
Sbjct: 487 GRLEDANGLLNEMLERGLVPNRT 509



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 21/247 (8%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGF------------FNWASQQ---PNFTHSPLSYHSI 90
           +L   +V+  + P ++TH+ L  GF            FN   +Q   PN     ++Y ++
Sbjct: 284 ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPN----AMTYTTL 339

Query: 91  LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150
           + +     ++    ++   +    I  + S Y  +I  L +  + + A S+ NE+     
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKL 399

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
                  N L+  L   G    A+K+ DEM  +G+  S + +   +  +C    L   L 
Sbjct: 400 SADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALI 459

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +   + ++        V   ++I GFC   R+E+A  +L+E+  R   P+   Y I+ EE
Sbjct: 460 VRTRMERKGKQA--NVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEE 517

Query: 271 FKLMGSV 277
               G V
Sbjct: 518 MMEKGFV 524


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 200/444 (45%), Gaps = 13/444 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            QPN      +++++++ L +  +I  +  +  ++       +   Y  +I  L +  +T
Sbjct: 134 HQPNIA----TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 189

Query: 136 QKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             A  +   + + NC+   P++    S++  L  D  +  A  +F EM H+G+  S   +
Sbjct: 190 SAAIRLLRSMEQGNCQ---PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTY 246

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I   C   +   V ++L+E+   +  ++   VI   ++   CK  +V EA  V+D +
Sbjct: 247 NSLIHALCNLCEWKHVTALLNEMVNSK--IMPNVVIFSTVVDALCKEGKVMEAHDVVDMM 304

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R  +P+ + Y  + +   L   + E   V       G AP    Y   I G    +RI
Sbjct: 305 IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 364

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A  L E +   +   +    + L+  +  +   + AI  F+ M+ +G++P   +   L
Sbjct: 365 EKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCIL 424

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK  + DE + + K +  ++   D++ Y +++  +C +G L  A  +   +  KGL
Sbjct: 425 LDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 484

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+V  Y  ++   C++ LL  A KL+ +M   G S N  TYN++   F    E    ++
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 544

Query: 492 LFHNMLEKGVAPDATTYTSLLEGL 515
           L   ML +G + D +T T L+E L
Sbjct: 545 LLQEMLARGFSADVSTSTVLVEML 568



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 178/430 (41%), Gaps = 9/430 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  +    +    L +  +M   G+  +     + I  FC   +LG   S+L ++ K  
Sbjct: 74  LLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLG 133

Query: 220 NSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +       IA    +I G C   ++ E   + D++     +P+ + Y  +      +GS 
Sbjct: 134 HQ----PNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 189

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L+   +    P    Y   I  L  +R++ +A  L   ++    +      N+L
Sbjct: 190 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSL 249

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I ++ ++ + +      N M+    +P +   S +   LCK  K  E  +V  ++     
Sbjct: 250 IHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 309

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YN ++   C    + EA  V   M  KG  PDV  Y++L+   C+   +  A  
Sbjct: 310 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY 369

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++M       N  TY+ L+     VG ++ A+ LFH M+ +G  PD  +Y  LL+ LC
Sbjct: 370 LFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLC 429

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
           +   L  A  +       ++     I +  +  +CR G    A  L   LSS   H +  
Sbjct: 430 KNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVW 489

Query: 575 SHVILLKSLA 584
           ++ I++  L 
Sbjct: 490 TYTIMINGLC 499



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 107/215 (49%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+     P+++  + L  ++ K      ++ +   + +     ++ + N++++
Sbjct: 52  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 111

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   RL  A+ V+ ++ + G  P+++ +N+L+   C E  +     L+D+M   G   
Sbjct: 112 SFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQP 171

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI+   +VG    A+RL  +M +    PD   YTS+++ LC++  +  AF +F
Sbjct: 172 NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLF 231

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++ ++  +  +    ++ + +LC    +   T LL
Sbjct: 232 SEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALL 266



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 22/227 (9%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L +A      M      P ++ +  L+ +  +         L  QM + G   N+ T NI
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+ F  +  +  A  +   +L+ G  P+  T+ +L+ GLC E  +     +F+K +   
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA----REVEM 591
                    T +  LC+ G    A +LLR  S + G+    V++  S+ D+    R+V  
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLR--SMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           A          S  + Q IS  +F   S          L+HAL   C
Sbjct: 227 AFNLF------SEMIHQGISPSIFTYNS----------LIHALCNLC 257


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 217/482 (45%), Gaps = 5/482 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y +++      ++     S+L ++    +  D   Y  +I   ++  +   AF V  E+ 
Sbjct: 305 YATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMF 364

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                +      +L+  L   G ++ A  +F EM+  G++     +   I  + +   + 
Sbjct: 365 ARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNME 424

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L E++K EN   N  +    I++G C    +  A ++  E+     KP+ + Y  
Sbjct: 425 KAYELLIEIKK-ENLTANAYMCGA-IVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTT 482

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSG 325
           + +     G   E   +L   +  G++P    Y   I+G     ++ E K  L E+I  G
Sbjct: 483 IVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKG 542

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +     A I G   + + ++A   F  M++ G  P     ++L    CK   + + 
Sbjct: 543 -LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKA 601

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
              ++ +       D+++++V++  L  +G+L+EA GV  E+  KGL PDV  Y SL+  
Sbjct: 602 FAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISN 661

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+E  L+ A +L D M   G + N+ TYN LI+   ++GEI  A  LF  + EKG+A +
Sbjct: 662 LCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           + TY++++ G C+  NL  AF++F+      V     +    +   C+ G+   A  L  
Sbjct: 722 SVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFL 781

Query: 565 GL 566
           G+
Sbjct: 782 GM 783



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 163/693 (23%), Positives = 276/693 (39%), Gaps = 144/693 (20%)

Query: 6   ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHS 65
           +T+  T  S   +         + W  L+E +     L + L+P +V  VI    +    
Sbjct: 33  STNADTNQSDNTVKEITSLLKQKNWQFLIESS----PLPNKLNPDVVFLVIKQNQVIDPK 88

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSL------------SLSRQINA-------IDSV 106
              GFFNW + +  F+ + LS  SIL  +             L R I+        +DS+
Sbjct: 89  RLHGFFNWVNSRTVFSQN-LSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDSI 147

Query: 107 LKQVK-VNKITLDSSVYRFIIPSLIQGKNT--QKAFSVFNEVKFNCEDIGPEICNSL--- 160
           +K  K +N  +  SSV  F I   I  K     +A SVF   K N   +G   CNSL   
Sbjct: 148 IKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKD 207

Query: 161 -----------------LAVLASD--------------GYIDNALKMFDEMSHRGVEFST 189
                            L  +  D              G ++    +  +M  +G   + 
Sbjct: 208 LLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNL 267

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKREN-SMINGSVIAVLIIHGFCKGKRVEEAFKV 248
           + + V I   C   + G V   L+  R   N  ++  + I   +I GFC+ KR  E   +
Sbjct: 268 VTYSVVIAGLC---RAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 249 LDELRIRECKPDFIAYRIVAEEF---KLMGSVFE-REVVLKKKRKL-------------- 290
           LDE+     KPD +AY  +   F     +G  F+ +E +  +K KL              
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 291 -----------------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
                            G+ P    Y   I G    + + +A EL   I     T +  +
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             A++ G     D   A   F  MI  G  P +   + + K L K  + +E +++  V+ 
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK 504

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+  YN ++   C +G++ E    + EM  KGL P+V  Y + +   CR   ++
Sbjct: 505 DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQ 564

Query: 453 PAKKLWDQMFASGCSGN-----------------------------------LKTYNILI 477
            A++ + +M  SG + N                                   ++T+++LI
Sbjct: 565 AAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLI 624

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVN 533
              S+ G+++ A+ +F  +L+KG+ PD  TYTSL+  LC+E +L+AAFE+ +    K +N
Sbjct: 625 HGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGIN 684

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +++   ++++     LC+ G    A +L  G+
Sbjct: 685 PNIVTYNALIN----GLCKLGEIAKARELFDGI 713



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 198/472 (41%), Gaps = 14/472 (2%)

Query: 156  ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            IC  L+     DG    A   F  M  +GV        V I    +N KL + + +  E+
Sbjct: 584  ICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSEL 643

Query: 216  RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              +   ++        +I   CK   ++ AF++ D++  +   P+ + Y  +      +G
Sbjct: 644  LDK--GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLG 701

Query: 276  SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
             + +   +     + G+A  +  Y   I G      + EA +L   +       D  V  
Sbjct: 702  EIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYC 761

Query: 336  ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            ALI G   + +   A+  F  M+E+G + +    + L     K  K  E  ++ + +  N
Sbjct: 762  ALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDN 820

Query: 395  DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +  +Y +++ + CT G ++EA  +  EM+++ + P+V  Y SL+    R       
Sbjct: 821  HITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEM 880

Query: 455  KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
              L+D+M A G   +   +++++    + G    AL+L  +ML +GV      YT L++ 
Sbjct: 881  FSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDA 940

Query: 515  LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            LC+  NL    +V ++       L+ +   T +    R G    A ++L  +        
Sbjct: 941  LCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR------ 994

Query: 575  SHVILLK-SLADAREVEMAIEHIKWIQESSPTM---LQEISAELFASLSSSS 622
            S + LL+ S+ +    +   E +  I E   ++   +Q +  +LF  LSSS+
Sbjct: 995  SFLNLLEFSVRNGNRGKSNGEMLSIILEGRKSLSGDIQTLDVDLFKELSSST 1046



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 1/218 (0%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           V F+ M EKG +P L T S +   LC+    DE +E+ + ++      D   Y  ++   
Sbjct: 254 VLFD-MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGF 312

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   R  E   ++ EM   GL PD   Y +L+    ++  +  A ++ ++MFA     N 
Sbjct: 313 CRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNT 372

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY  LI    ++G++E A  LF  M   G+ PD  TY  L+EG  +  N++ A+E+  +
Sbjct: 373 FTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIE 432

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
               ++     +    +  LC  G    A +L + + S
Sbjct: 433 IKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMIS 470



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 23/253 (9%)

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           L+  ++LSK+L K N+ +   +VYK +L A     D+ +Y  +++  C  G++ E   V+
Sbjct: 198 LACCNSLSKDLLKGNRVELFWKVYKGMLGA--IVPDVYTYTNLINAYCRVGKVEEGKHVL 255

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            +M+ KG  P++  Y+ ++   CR   +  A +L   M   G   +   Y  LI  F   
Sbjct: 256 FDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQ 315

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI- 542
                   +   M   G+ PD   YT+L+ G  +++++  AF+V       + M AR I 
Sbjct: 316 KRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQV------KEEMFARKIK 369

Query: 543 LSTFMI-----SLCRRGHFLVATKL-----LRGLSSDLGHSDSHVILLKSLADAREVEMA 592
           L+TF        LC+ G    A  L     + G+  D+    ++  L++     + +E A
Sbjct: 370 LNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDI---QTYNCLIEGYYKVQNMEKA 426

Query: 593 IEHIKWIQESSPT 605
            E +  I++ + T
Sbjct: 427 YELLIEIKKENLT 439



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 100/234 (42%), Gaps = 14/234 (5%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLS 95
           L   +  + INP ++T+++L  G                  +     + ++Y +I+    
Sbjct: 674 LHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYC 733

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
            S  +     +   +K+  +  DS VY  +I    +  NT+KA S+F  +        P 
Sbjct: 734 KSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA 793

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N+L+      G +  A ++ ++M    +  + + + + I   C    + +   +  E+
Sbjct: 794 F-NALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEM 852

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
           +KR N M N  +    ++HG+ +  R  E F + DE+  R  KPD +A+ ++ +
Sbjct: 853 QKR-NVMPN-VLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVD 904


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 182/411 (44%), Gaps = 3/411 (0%)

Query: 168  GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
            G +D   K+ ++M  +G++ ++  +G  I   C   KL +      E+  +   ++  ++
Sbjct: 718  GELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ--GILPDTI 775

Query: 228  IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            +   ++ GFCK   +  A K   E+  R+  PD + Y  +   F  +G + E   +  + 
Sbjct: 776  VYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 835

Query: 288  RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
               G+ P    + E + G      I +A  +   ++    + +      LI G     D 
Sbjct: 836  LCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 895

Query: 347  RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             SA    + M + G  P + T +++   LCK    +E V++     A     D  +Y  +
Sbjct: 896  DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 955

Query: 407  VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
            +   C SG + +A  ++ EM  KGL P +  +N LM   C   +L   +KL + M A G 
Sbjct: 956  MDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1015

Query: 467  SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
            + N  T+N L+ ++     ++ A  ++ +M  +GV PD  TY +L++G C   N++ A+ 
Sbjct: 1016 APNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWF 1075

Query: 527  VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
            +F +       ++ S  S  +    +R  F+ A ++   +  D   +D  +
Sbjct: 1076 LFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEI 1126



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 36/255 (14%)

Query: 345 DPRSAIVFFNFMIEKGRVP--------------TLST------LSNLSKNLCKRNKSDEL 384
           DPR   VFF  ++E G +P               LS       L+ LSK+    NK+   
Sbjct: 597 DPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDC---NKTATA 653

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + V++         ++ SYN+++ F+C  GR+ EA+ ++  M+ KG  PDV  Y++++  
Sbjct: 654 IIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVING 713

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            CR   L    KL ++M   G   N  TY  +I     + ++  A   F  M+ +G+ PD
Sbjct: 714 YCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPD 773

Query: 505 ATTYTSLLEGLCQETNLQAA----FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
              YT+L++G C+  +++AA    +E+ ++ +  DV+   +I+S F    C+ G  + A 
Sbjct: 774 TIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF----CQIGDMVEAG 829

Query: 561 KLL-----RGLSSDL 570
           KL      RGL  D+
Sbjct: 830 KLFHEMLCRGLEPDI 844



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 103/206 (50%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P + + S +    C+  + D++ ++ + +       +  +Y  ++  LC   +L E
Sbjct: 698 KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A     EM  +G+ PD   Y +L++  C+   +R A K + +M +   + ++ TY  +IS
Sbjct: 758 AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 817

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F ++G++  A +LFH ML +G+ PD  T+T L+ G C+  +++ AF V N  +      
Sbjct: 818 GFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSP 877

Query: 539 ARSILSTFMISLCRRGHFLVATKLLR 564
                +T +  LC+ G    A +LL 
Sbjct: 878 NVVTYTTLIDGLCKEGDLDSANELLH 903



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/473 (20%), Positives = 195/473 (41%), Gaps = 46/473 (9%)

Query: 79   NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
             +T   +SY +++       +++ +  +++++K   +  +S  Y  II  L +     +A
Sbjct: 699  GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEA 758

Query: 139  FSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
               F+E+    + I P+  +  +L+      G I  A K F EM  R +    + +   I
Sbjct: 759  EEAFSEMI--GQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 816

Query: 197  WKFCENAKLGQVLSMLDEV--RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
              FC+   + +   +  E+  R  E  +I  + +    ++G+CK   +++AF+V + +  
Sbjct: 817  SGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTEL----MNGYCKAGHIKDAFRVHNHMIQ 872

Query: 255  RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              C P+ + Y  + +     G +     +L +  K+G+ P    Y   + GL     I E
Sbjct: 873  AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 932

Query: 315  A-KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            A K +GE   +G        LNA                              T + L  
Sbjct: 933  AVKLVGEFEAAG--------LNA---------------------------DTVTYTTLMD 957

Query: 374  NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              CK  + D+  E+   +        + ++NV+++  C  G L +   ++  M  KG+ P
Sbjct: 958  AYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 1017

Query: 434  DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
            + + +N L++  C  + L+ A  ++  M + G   + KTY  L+        ++ A  LF
Sbjct: 1018 NATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLF 1077

Query: 494  HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
              M  KG +   +TY+ L++G  +      A E+F++     +   + I   F
Sbjct: 1078 QEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFF 1130


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 135/540 (25%), Positives = 246/540 (45%), Gaps = 83/540 (15%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWA-SQQPNFTHSPLSYHSILKSLS---LSRQIN 101
           SL+P+  + ++    L   SLAL FF++  S  PNF H   +Y  I+  LS   L  + +
Sbjct: 104 SLTPNEASEILKS--LNSPSLALRFFHFCPSLSPNFHHDCFTYSRIILILSKSNLPDRFH 161

Query: 102 AIDSVLKQVKVNKIT--------------------------------LDSSVYRFIIPSL 129
              S++ +++ N +                                 +    Y+ ++ + 
Sbjct: 162 LARSIVSEMERNGVRGSISTVNILIGFYENSEDLQKCIGLIKKWGLRMTGYTYKCLVQAY 221

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           ++ +NT+K F+V+ E+K     +     N LL  L  D  +D+A K+F++M  +  E   
Sbjct: 222 LRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDE 281

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKV 248
             + + I    +  K  + L + +E+    N   + +VIA   +I      + V++A  +
Sbjct: 282 YTYTIMIRMTGKIGKPDESLELFEEML---NKGYSPNVIAYNTMIQALANARMVDKAILL 338

Query: 249 LDELRIRECKPDFIAYRIV----AEEFKL--MGSVFE-------REV---VLKKKRKLGV 292
             ++  +EC+P    Y ++    A E KL  +  V E       R +   +++  +KLG 
Sbjct: 339 FLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYMSRSIYAYLVRTLKKLGH 398

Query: 293 APRTNDYREFILGLIVERR------------ICEAKELGEVI-VSGKF-----TIDDDVL 334
           A  +  +R F        R            +C A +  E I + GK      ++D  + 
Sbjct: 399 A--SEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMY 456

Query: 335 NAL---IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           N +   +G +  I P   +  +  M + G +P   T + L  +  +  K DE +++++ L
Sbjct: 457 NTVFSALGKLKQISPLHDL--YEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEEL 514

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             +DY  D  SYN +++ L  +G L EA+   +EM  KGL+PDV  Y++L+E   + D +
Sbjct: 515 EDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKV 574

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +L+D+M A GC  N+ TYNIL+      G    A+ L+  + ++G+ PD+ TY+ L
Sbjct: 575 EMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVL 634


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 205/454 (45%), Gaps = 14/454 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +S++SIL  L   R+++   S+ + +K +    +SS Y  II  L  G   ++A+ + 
Sbjct: 353 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRIL 411

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E++     + P +   N ++  L     ++ A K+F+  S RG     + +   I    
Sbjct: 412 DEMEH--ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 469

Query: 201 ENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +  ++ +   + +   +     N ++  S+I    IHG     R E+  K+  EL  R C
Sbjct: 470 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG-----RKEDGHKIFKELIRRGC 524

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KPD        +     G V +  ++ +  R  G  P    Y   I GL    +  E   
Sbjct: 525 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSN 584

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           +   +    F +D    NA++ G   S     A      M EK   PT++T   +   L 
Sbjct: 585 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 644

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++EM +KGL P+V 
Sbjct: 645 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 704

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +NSL++A  + + +  A   +  M    C  N  TY+ILI+    V +   A   + +M
Sbjct: 705 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 764

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            ++G+ P+  TYT+++ GL +  N+  A+ +F +
Sbjct: 765 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFER 798



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 216/491 (43%), Gaps = 11/491 (2%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF+    Q       +SY S++  L  + ++   + +  Q++  +    +  Y  +
Sbjct: 267 MAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 325

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I         + A+ +   ++       P +   NS+L  L     +D AL +F+ M  +
Sbjct: 326 IMGYGSAGRFEDAYKLLERLRER--GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-K 382

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
             E ++  + + I   C   ++ +   +LDE+   E++ +  +++ V +++   CK +++
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM---EHASLFPNLLTVNIMVDRLCKARKL 439

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           EEA+K+ +    R C PD + Y  + +     G V E   + +K    G       Y   
Sbjct: 440 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSL 499

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGR 361
           I    +  R  +  ++ + ++      D  +LN  +  V  + +     + F  +   G 
Sbjct: 500 IRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 559

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P + + S L   L K  ++ E   ++  +    +  D  +YN +V   C SG++ +AY 
Sbjct: 560 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 619

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++EMK K + P V+ Y ++++   + D L  A  L+++  + G   N+  Y+ LI  F 
Sbjct: 620 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 679

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +VG I+ A  +   M++KG+ P+  T+ SLL+ L +   +  A   F             
Sbjct: 680 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 739

Query: 542 ILSTFMISLCR 552
             S  +  LCR
Sbjct: 740 TYSILINGLCR 750



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/513 (20%), Positives = 230/513 (44%), Gaps = 33/513 (6%)

Query: 34  LEQTLHQL-----GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           LE+ L ++     GL +     L A ++    L    LA+        +P F+    +Y 
Sbjct: 128 LEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFS----AYT 183

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
            ++ +L+ +R+      +L+Q++     +   ++  ++ +L +      A ++ +EVK +
Sbjct: 184 VLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGS 243

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           C +    + N  +      G +D A K F E+  +G++   + +   IW  C+  +LG+ 
Sbjct: 244 CLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEA 303

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY---- 264
             +  ++ + E S+        +I+ G+    R E+A+K+L+ LR R C P  +++    
Sbjct: 304 EELFAQM-EAERSVPCAYAYNTMIM-GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 361

Query: 265 ------RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
                 R V E      S+FE   V+KK  +    P ++ Y   I  L +  R+ EA  +
Sbjct: 362 TCLGKKRKVDEAL----SLFE---VMKKDAE----PNSSTYNIIIDMLCLGGRVEEAYRI 410

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +       +   +N ++  +        A   F    ++G  P   T  +L   L K
Sbjct: 411 LDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGK 470

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + + DE   +++ +    +  +   Y  ++      GR  + + + +E+ R+G  PD++ 
Sbjct: 471 KGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTL 530

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
            N+ M+   +   +   + +++ + + G   ++++Y+ILI   ++ G+      +FH M 
Sbjct: 531 LNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMK 590

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ++G A DA  Y ++++G C+   +  A+E+  +
Sbjct: 591 QQGFALDARAYNAVVDGFCKSGKVHKAYEILEE 623



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 122/538 (22%), Positives = 227/538 (42%), Gaps = 59/538 (10%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL--LTHHSLALGFFNWASQQPNFTHSP 84
           A  WTP L + +       + S S  A V+   L  + + SLA  FF  AS        P
Sbjct: 54  APTWTPDLARAVSS-----TFSASPTADVVISVLRSIRNPSLAAPFFLLASSSSASAPHP 108

Query: 85  L---SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF-- 139
           L   +YH++L  L     + A++ VL+++ V    L +     +  +L++ +    A   
Sbjct: 109 LPADAYHAVLPFLH--HDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLA 166

Query: 140 -SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            +V   +KF      P       L+  LA     + AL++  +M   G E     F   +
Sbjct: 167 VAVMRRLKFR-----PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLV 221

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
                  ++   L+++DEV+   + +    V+  + I  F K   V+ A+K   EL+ + 
Sbjct: 222 RALAREGQVADALALVDEVKG--SCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQG 279

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            KPD ++Y  +       G + E E +  +       P    Y   I+G     R  +A 
Sbjct: 280 LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 339

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           +L E +                                   E+G +P++ + +++   L 
Sbjct: 340 KLLERLR----------------------------------ERGCIPSVVSFNSILTCLG 365

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K+ K DE + +++V+   D   +  +YN+++  LC  GR+ EAY ++ EM+   L P++ 
Sbjct: 366 KKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 424

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
             N +++  C+   L  A K+++     GC+ +  TY  LI    + G+++ A RLF  M
Sbjct: 425 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           L+ G   +   YTSL+         +   ++F + +        ++L+T+M  + + G
Sbjct: 485 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 542



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 188/461 (40%), Gaps = 46/461 (9%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           AS  PN     L+ + ++  L  +R++     + +         D   Y  +I  L +  
Sbjct: 417 ASLFPNL----LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 472

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A+ +F ++     +  P +  SL+      G  ++  K+F E+  RG +       
Sbjct: 473 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLN 532

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            ++    +  ++ +   + +++R      +       ++IHG  K  +  E   +   ++
Sbjct: 533 TYMDCVFKAGEVEKGRMIFEDIRSY--GFLPDVRSYSILIHGLTKAGQARETSNIFHAMK 590

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +    D  AY  V + F   G V +   +L++ ++  V P    Y   + GL    R+ 
Sbjct: 591 QQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 650

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           EA  L E   S    ++  + ++LI   G V  ID   A +    M++KG  P + T ++
Sbjct: 651 EAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID--EAYLILEEMMKKGLTPNVYTWNS 708

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   L K  + +E +  ++ +       +  +Y+++++ LC   +  +A+   Q+M+++G
Sbjct: 709 LLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 768

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P+V                                    TY  +IS  ++VG I  A 
Sbjct: 769 LVPNVV-----------------------------------TYTTMISGLAKVGNITDAY 793

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            LF      G  PDA ++ +L+EG+        A++VF ++
Sbjct: 794 SLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEET 834


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 186/398 (46%), Gaps = 16/398 (4%)

Query: 137 KAFSVFNE--VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           K FS F +  V +N E       N L+  L   G I  A  +   M  +G     + +  
Sbjct: 96  KVFSEFPQLGVCWNTESY-----NILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTT 150

Query: 195 FIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            I  +C   +L +V+ ++ E++ +    N     S+I +L     CK  +V E  KVL E
Sbjct: 151 IIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLL-----CKSGKVVEGEKVLRE 205

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R   PD + Y  + + F  +G+      +  +     + P +  +   I GL    +
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGK 265

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + EA +L   ++   F  D+    ALI     + + + A    N M++ G  P + T + 
Sbjct: 266 VVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTA 325

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L+  LCK  + D   E+   +       ++ +YN +V+ LC +G + +A  +++EMK  G
Sbjct: 326 LADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG 385

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L PD   Y +LM+A  +   +  A++L  +M   G    + T+N+L++     G++E   
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           RL   MLEKG+ P+A TY S+++  C   N++ + E++
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIY 483



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 198/440 (45%), Gaps = 6/440 (1%)

Query: 157 CNSLLAVLASD-GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           CN  L  L+S    +   LK+F E    GV ++T  + + +       K+ +   +L  +
Sbjct: 77  CNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLL--M 134

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R      I   V    II G+C    +++  +++ E++++  KP+   Y  +       G
Sbjct: 135 RMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSG 194

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V E E VL++  K GV P    Y   I G         A +L   + + +   D    +
Sbjct: 195 KVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFS 254

Query: 336 ALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI  +S S     A   FN MI+KG  P   T + L    CK  +  +   ++  +   
Sbjct: 255 ALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQI 314

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +Y  +   LC SG L  A  ++ EM RKGL  ++S YN+++   C+   +  A
Sbjct: 315 GLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            KL ++M  +G   +  TY  L+  + + GE+  A  L   ML++G+ P   T+  L+ G
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGH 572
           LC    L+    +    +   +M   +  ++ M   C R +  ++T++ RG+ +   +  
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 573 SDSHVILLKSLADAREVEMA 592
           S+++ IL+K    AR ++ A
Sbjct: 495 SNTYNILIKGHCKARNMKEA 514



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 196/426 (46%), Gaps = 11/426 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN      +Y SI+  L  S ++   + VL+++    +  D  +Y  +I    +  NTQ
Sbjct: 177 KPNL----YTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQ 232

Query: 137 KAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A+ +F+E++    +I P+    ++L+  L+  G +  A K+F+EM  +G E   + +  
Sbjct: 233 AAYKLFSEME--AREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTA 290

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  +C+  ++ +   + +++   +  +    V    +  G CK   ++ A ++L E+  
Sbjct: 291 LIDGYCKLGEMKKAFFLHNQMV--QIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +  + +   Y  +       G++ +   ++++ ++ G+ P T  Y   +        + +
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A+EL   ++           N L+ G   S           +M+EKG +P  +T +++ K
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMK 468

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C RN      E+Y+ + A     D  +YN+++   C +  ++EA+ + +EM  K  + 
Sbjct: 469 QYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNL 528

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
             S YN+L++   +   L  A++L+++M   G   + + YN+ +    E G +E  L L 
Sbjct: 529 TASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELC 588

Query: 494 HNMLEK 499
              +EK
Sbjct: 589 DEAIEK 594



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/463 (21%), Positives = 199/463 (42%), Gaps = 3/463 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ ++ SL    +I     +L +++      D   Y  II         QK   +  E+
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +           +S++ +L   G +    K+  EM  RGV    + +   I  FC+    
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +  E+  RE  ++  S+    +I G     +V EA K+ +E+  +  +PD + Y 
Sbjct: 232 QAAYKLFSEMEARE--IVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + +  +G + +   +  +  ++G+ P    Y     GL     +  A EL   +   
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
              ++    N ++ G   + +   A+     M E G  P   T + L     K  +  + 
Sbjct: 350 GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKA 409

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+ + +        + ++NV+++ LC SG+L +   +++ M  KG+ P+ + YNS+M+ 
Sbjct: 410 RELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C  + +R + +++  M A G   +  TYNILI    +   ++ A  L   M+EK     
Sbjct: 470 YCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLT 529

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           A++Y +L++G  +   L  A ++F +     ++ +  I + F+
Sbjct: 530 ASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 53/306 (17%), Positives = 120/306 (39%), Gaps = 50/306 (16%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNF-----------THSPLSYHSILKS 93
           D L   ++ +   P  +T+ +L  G+      +  F           T + ++Y ++   
Sbjct: 270 DKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADG 329

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153
           L  S +++  + +L ++    + L+ S Y  I+  L +  N                   
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGN------------------- 370

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
                           I  A+K+ +EM   G+   TI +   +  + +  ++ +   +L 
Sbjct: 371 ----------------ILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 214 EVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           E+  R    +  +V+   ++++G C   ++E+  ++L  +  +   P+   Y  + +++ 
Sbjct: 415 EMLDRG---LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYC 471

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           +  ++     + +     GV P +N Y   I G    R + EA  L + +V  +F +   
Sbjct: 472 IRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTAS 531

Query: 333 VLNALI 338
             NALI
Sbjct: 532 SYNALI 537


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 131/561 (23%), Positives = 242/561 (43%), Gaps = 55/561 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L LR  +   LV  V+   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 72  KWGPDAERALEVLMLR--VDHWLVREVMKTDVGV--NVKMQFFRWAAKKRNYQHDTSTYM 127

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++  L L  Q   +  +++++  + I + + +    +I  L   K   KA ++F ++K 
Sbjct: 128 ALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKA 187

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLG 206
                  +  NS++ +L  +G  +   ++++EMS+ G     T+ +   I  FC+  +  
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQD 247

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLII---------HG-----------FC--------- 237
             + +L+E++  EN M   + I  +II         HG           +C         
Sbjct: 248 SAIRLLNEMK--ENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTE 305

Query: 238 ------KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
                 K  R++EA+    E++  +CKPD +   ++      +G     +  LK   ++G
Sbjct: 306 LIRGLGKAGRIDEAYHFYHEMQREDCKPDTV---VMNNMINFLGKAGRLDDGLKLFEEMG 362

Query: 292 VA---PRTNDYREFILGLIVER-RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
           V+   P    Y   I  L   + R+ E     E +     +      + LI G   +   
Sbjct: 363 VSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRI 422

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A++    M EKG  P  +   +L   L K  + D   E+++ L  N   +    Y VM
Sbjct: 423 EKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVM 482

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  L  +GRL +A  +  EM + G  P+V  YN+LM    R  +L  A     +M   GC
Sbjct: 483 IKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGC 542

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ +YNI+++  ++ G    A+ +  NM    + PDA +Y ++L  L      + A E
Sbjct: 543 LPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAE 602

Query: 527 VFNK----SVNHDVMLARSIL 543
           +  +       +D++   SIL
Sbjct: 603 LMKEMNALGFEYDLITYSSIL 623



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 178/427 (41%), Gaps = 22/427 (5%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
            +N  S + +     ++Y +++ +   L RQ +AI  +L ++K N +   + +Y  II  
Sbjct: 216 LYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAI-RLLNEMKENGMQPTAKIYTMIISL 274

Query: 129 LIQGKNTQKAFSVFNEVKF-NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGV 185
             +  N   A S+F E+++  C    P++     L+  L   G ID A   + EM     
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCR---PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDC 331

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE---NSMINGSVIAVLIIHGFCKGKRV 242
           +  T+     I    +  +L   L + +E+       N +   ++I  L    F    RV
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL----FESKSRV 387

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            E F   + ++     P    Y I+ + F     + +  ++L++  + G  P    Y   
Sbjct: 388 SEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 303 ILGLIVERRI---CEA-KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           I  L   +R    CE  +EL E   S    +   ++  L G    +D   AI  F+ M +
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHL-GKAGRLD--DAINLFDEMSK 504

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G  P +   + L   L +    DE +   + +  +    D+ SYN++++ L  +G    
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++  MK   + PD   YN+++ A     +   A +L  +M A G   +L TY+ ++ 
Sbjct: 565 AMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILE 624

Query: 479 KFSEVGE 485
              +V +
Sbjct: 625 AIGKVDQ 631


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/501 (22%), Positives = 227/501 (45%), Gaps = 28/501 (5%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S AL  F+   + PN     +++ +++  L    ++    ++L ++  + +  +   Y  
Sbjct: 164 SEALDLFHQMCR-PNV----VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 218

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           I+  + +  +T  A ++  +++     I P   I ++++  L  DG   +A  ++ EM  
Sbjct: 219 IVDGMCKIGDTVSALNLLRKME-EMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQE 277

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKR 241
           +G+      +   I  FC + +  +   +L E+ +R+   IN +V+    +I+ + K ++
Sbjct: 278 KGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK---INPNVVTYSALINAYVKERK 334

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
             EA ++ DE+  R   P+ I Y  + + F     +   E +       G +P    +  
Sbjct: 335 FFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNT 394

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKG 360
            I G    +RI +  EL   +       D    N LI     + D  +A+     MI  G
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-----------NDYFTDMESYNVMVSF 409
             P + T + L   LC   K  + +E++K +             N    D+++YN+++S 
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L   G+  EA  + +EM  +G+ P+   Y+S++   C++  L  A +++D M +   S +
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + T+N L+S + + G ++  L LF  M  +G+  DA TY +L+ G  +  N+  A ++F 
Sbjct: 575 VVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQ 634

Query: 530 K----SVNHDVMLARSILSTF 546
           +     V  D +  RS+L+  
Sbjct: 635 EMISSGVYPDTITIRSMLTVL 655



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 188/451 (41%), Gaps = 49/451 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+ V+      D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K
Sbjct: 81  NKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITK 140

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                    V    ++HG C   RV EA  +  ++    C+P+ + +  +       G V
Sbjct: 141 L--GFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRV 194

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L +  + G+ P    Y                      IV G   I D V    
Sbjct: 195 VEAVALLDRMVEDGLQPNQITY--------------------GTIVDGMCKIGDTV---- 230

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                     SA+     M E   + P +   S +   L K  +  +   +Y  +     
Sbjct: 231 ----------SALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGI 280

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F D+ +YN M+   C+SGR  EA  ++QEM  + ++P+V  Y++L+ A  +E     A++
Sbjct: 281 FPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEE 340

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+D+M   G   N  TYN +I  F +   ++ A  +F+ M  KG +PD  T+ +L++G C
Sbjct: 341 LYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYC 400

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLG 571
               +    E+ ++     ++   +  +T +   C  G    A  L +     G+  D+ 
Sbjct: 401 GAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIV 460

Query: 572 HSDSHVILLKSLADAREVEMAIEHIKWIQES 602
             ++   LL  L D  +++ A+E  K +Q+S
Sbjct: 461 TCNT---LLDGLCDNGKLKDALEMFKAMQKS 488



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 185/424 (43%), Gaps = 52/424 (12%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L  +G +  A+ + D M   G++ + I +G  +   C   K+G  +S L+ +RK 
Sbjct: 183 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC---KIGDTVSALNLLRKM 239

Query: 219 E--NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           E  + +    VI   II G  K  R  +A  +  E++ +   PD   Y  + + F   G 
Sbjct: 240 EEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGR 299

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E + +L++  +  + P    Y   I   + ER+  EA+EL                  
Sbjct: 300 WSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL------------------ 341

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                           ++ M+ +G +P   T +++    CK+N+ D    ++ V++    
Sbjct: 342 ----------------YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGC 385

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ ++N ++   C + R+ +   ++ EM   GL  D + YN+L+   C    L  A  
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALD 445

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPDA 505
           L  QM +SG   ++ T N L+    + G+++ AL +F  M +            GV PD 
Sbjct: 446 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDV 505

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLR 564
            TY  L+ GL  E     A E++ K + H  ++  +I  + MI+ LC++     AT++  
Sbjct: 506 QTYNILISGLINEGKFLEAEELY-KEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFD 564

Query: 565 GLSS 568
            + S
Sbjct: 565 SMGS 568



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 200/463 (43%), Gaps = 23/463 (4%)

Query: 77  QPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN     ++Y +I+  +  +   ++A++ + K  +++ I  +  +Y  II  L +    
Sbjct: 210 QPN----QITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRH 265

Query: 136 QKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A +++ E++   + I P++   N ++    S G    A ++  EM  R +  + + + 
Sbjct: 266 SDAHNLYTEMQE--KGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYS 323

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I  + +  K  +   + DE+  R   +I  ++    +I GFCK  R++ A  +   + 
Sbjct: 324 ALINAYVKERKFFEAEELYDEMLPR--GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMA 381

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            + C PD   +  + + +     + +   +L +  + G+   T  Y   I G  +   + 
Sbjct: 382 TKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLN 441

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE-----------KGR 361
            A +L + ++S     D    N L+ G   +   + A+  F  M +            G 
Sbjct: 442 AALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGV 501

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T + L   L    K  E  E+YK +       +  +Y+ M++ LC   RL EA  
Sbjct: 502 EPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQ 561

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +   M  K   PDV  +N+L+   C+   +    +L+ +M   G   +  TY  LI  F 
Sbjct: 562 MFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFR 621

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           +VG I GAL +F  M+  GV PD  T  S+L  L  +  L+ A
Sbjct: 622 KVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRA 664


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 223/517 (43%), Gaps = 59/517 (11%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T   + ++ IL SL  S+  + + S+ +Q++   I  +  ++ F  P  + G +    
Sbjct: 71  NPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGI--NPVLFHFQHPHQLMGYHP--- 125

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
               N + F           +L+  L   G I  AL   D +   G +   +G+G  I  
Sbjct: 126 ----NTITFT----------TLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHG 171

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
            C   K+G+  + LD +R+ + +++  +V+    II G CK K V +AF +  E+  +  
Sbjct: 172 LC---KVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGI 228

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+ + Y  +   F  +G + +   +  K     + P    +   + G   + ++ E K 
Sbjct: 229 SPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKT 288

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           +                                  F  M+++G  P + T  +L    C 
Sbjct: 289 V----------------------------------FAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + ++   +   +S      D++SYN+++   C   ++ EA  + +EM  K + PDV  
Sbjct: 315 VKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVT 374

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YNSL++  C+   +  A KL D+M   G   ++ TY+ ++    +  +++ A+ L   + 
Sbjct: 375 YNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLK 434

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           ++G+ P+  TYT L++GLC+   L+ A  +F   +     +  +  +  +   C +G F 
Sbjct: 435 DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFD 494

Query: 558 VATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
            A  LL  +  +    D  ++ I+++SL D  E + A
Sbjct: 495 EALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKA 531



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/484 (21%), Positives = 208/484 (42%), Gaps = 16/484 (3%)

Query: 22  NRTRPARKWTPLLEQTLHQLGLRD--SLSPSLVARVINPYLLTHHSLALGFFNWASQQPN 79
           N T PA ++  +L   +         SLS  +    INP L          F    Q   
Sbjct: 71  NPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLF--------HFQHPHQLMG 122

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +  + +++ +++K L L  QI+        V      LD   Y  +I  L +   T+ A 
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +   V  N       + ++++  +  D ++++A  ++ EM  +G+  + + +   I  F
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
                +GQ+   +D   K     I   V    +++ GFCK  +++E   V   +  +  K
Sbjct: 243 ---FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIK 299

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+ + Y  + + + L+  V + + +L    + GV P    Y   I G    +++ EA  L
Sbjct: 300 PNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNL 359

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +       D    N+LI  +  +   S A+   + M ++G  P + T S++   LCK
Sbjct: 360 FKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCK 419

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            ++ D+ + +   L       +M +Y +++  LC  GRL +A+ + +++  KG +  V+ 
Sbjct: 420 NHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNT 479

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y  ++   C + L   A  L  +M  + C  +  TY I+I    +  E + A +L   M+
Sbjct: 480 YTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL-REMI 538

Query: 498 EKGV 501
            +G+
Sbjct: 539 TRGL 542


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 129/560 (23%), Positives = 247/560 (44%), Gaps = 53/560 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L ++  +   LV  V+   +    S+ + FF WA+++ N+ H   +Y 
Sbjct: 68  KWGPDAEKALEVLMMK--VDHWLVREVMKTDVGV--SVKMQFFRWAARKRNYEHDTSTYM 123

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L +  Q   +  +++++  N + + + +    II  L   K   KA ++F ++K 
Sbjct: 124 ALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKA 183

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                     NS++ +L  +G  +   ++++EMS+ G  F  T+ +   I  FC+  +  
Sbjct: 184 RKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQD 243

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + +L+E+  ++N M   + I  +++    K   V  A  + +E+R + C+PD   Y  
Sbjct: 244 SAIWLLNEM--KDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTE 301

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G + E      + R+ G  P T      I  L    R+ +A +L E + + +
Sbjct: 302 LIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLR 361

Query: 327 ----FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS- 381
                   + ++ AL  S S +   S+  +F  M   G  P+  T S L    CK N++ 
Sbjct: 362 CIPSVVTYNTIIKALFESKSRVSEISS--WFERMKGSGISPSPFTYSILIDGFCKTNRTE 419

Query: 382 -------------------------DELVEVYKVLSANDYFTDMES---------YNVMV 407
                                    D L +  +   AN+ F +++          Y VM+
Sbjct: 420 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMI 479

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             L  +GRL +A  +  EM R G  P+V  YN+LM    R  +L  A     +M   GC 
Sbjct: 480 KHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCI 539

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            ++ +YNI+++  ++ G  + A+ +  NM +  + PDA +Y ++L  L      + A ++
Sbjct: 540 PDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKL 599

Query: 528 FNK----SVNHDVMLARSIL 543
             +      ++D++   SIL
Sbjct: 600 MKEMNAIGFDYDLITYSSIL 619



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 4/202 (1%)

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF-YNSLMEACCREDLLRP 453
           +Y  D  +Y  ++  L    +  E + +IQEM R  +        + ++       ++  
Sbjct: 114 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISK 173

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLL 512
           A  ++ Q+ A  C      YN +I      GE E    L++ M  +G   PD  TY++L+
Sbjct: 174 AVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALI 233

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
              C+     +A  + N+  ++ +     I +  M  L +  +   A  L   +      
Sbjct: 234 SAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCR 293

Query: 573 SD--SHVILLKSLADAREVEMA 592
            D  ++  L++ L  A  ++ A
Sbjct: 294 PDVFTYTELIRGLGKAGRLDEA 315


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 214/470 (45%), Gaps = 11/470 (2%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L SL  + ++     V   + +  I  D  ++  +I +  +G     A  +F+++    
Sbjct: 227 LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKM---- 282

Query: 150 EDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           E +G  P +   N+++  L   G +D A +  ++M    V  S I + VFI    +  K+
Sbjct: 283 EKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKI 342

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L E+   E   +   V+   +I G+CK   + EA K+ D++  +   P+ +   
Sbjct: 343 DEANCVLKEMS--ELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLN 400

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + F     + + E VL++    G+      +   I  L ++ R   A      ++  
Sbjct: 401 SLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLR 460

Query: 326 KFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +D +L  L+  +     +  A+  +  ++ KG VP + T + L   LCK     E 
Sbjct: 461 NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQET 520

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +++ + +       D  +YN ++S  C  G+++E + + +EM +KG+ PD+  +N L+  
Sbjct: 521 LKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHG 580

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C  D +  A +LW +   +G   N+ TY ++I  + +  ++E    L + ++ K +  +
Sbjct: 581 LCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELN 640

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +  Y SL+   C   N+ AAF + +   +  V+L+ +  S+ M  LC  G
Sbjct: 641 SVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIG 690



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 210/448 (46%), Gaps = 19/448 (4%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPEI--CNSLLAVLASDGYIDNALKMFDEM 180
           F++ SL++    +K++ V++   F C   I P++   ++++         D+A+ +F +M
Sbjct: 226 FLLSSLVKANELKKSYEVYD---FICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKM 282

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHG 235
              GV  + + +   I   C++ +L       DE  + +  M+   V   LI     I+G
Sbjct: 283 EKLGVAPNVVTYNNIIHGLCKSGRL-------DEAYRFKEKMVKEKVSPSLITYSVFING 335

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             K ++++EA  VL E+      P+ + Y  + + +  MG++ E   +       G++P 
Sbjct: 336 LIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPN 395

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFN 354
           +      I G     +I +A+ + E ++     I+    + +I  +       +A+ F  
Sbjct: 396 SVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIR 455

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +   P    L+ L   LCK  K  E VE++  L    +  ++ + N ++  LC +G
Sbjct: 456 EMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAG 515

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++E   ++++M  +GL  D   YN+L+  CC+E  ++   +L ++M   G   ++ T+N
Sbjct: 516 NMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFN 575

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +L+       +I+ A RL+H   + G  P+  TY  +++G C+   ++    + N+ V+ 
Sbjct: 576 LLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSK 635

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKL 562
            + L   + ++ + + C  G+   A +L
Sbjct: 636 KLELNSVVYNSLIRAYCINGNMNAAFRL 663



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/529 (22%), Positives = 228/529 (43%), Gaps = 25/529 (4%)

Query: 51  LVARVINPYLLTH-HSLALGFFNWASQ---QPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           L + +IN +   H    A+G F+   +    PN     ++Y++I+  L  S +++     
Sbjct: 258 LFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNV----VTYNNIIHGLCKSGRLDEAYRF 313

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLA 162
            +++   K++     Y   I  LI+ +   +A  V  E+     ++G  P   + N+L+ 
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM----SELGFVPNEVVYNTLID 369

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                G I  ALK+ D+M  +G+  +++     I  FC++ ++GQ  ++L+E+  R   +
Sbjct: 370 GYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPI 429

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKL--MGSVFE 279
             GS    ++I+  C   R   A   + E+ +R  +P D +   +V+   K    G   E
Sbjct: 430 NQGSF--SMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVE 487

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
               L  K   G  P        I GL     + E  +L   ++      D    N LI 
Sbjct: 488 LWCRLLGK---GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLIS 544

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G       +        M++KG  P + T + L   LC  +K DE   ++     N Y  
Sbjct: 545 GCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVP 604

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +Y VM+   C + ++ E   ++ E+  K L+ +   YNSL+ A C    +  A +L 
Sbjct: 605 NVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLR 664

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D M + G   +  TY+ L+     +G ++ A  L   M ++G+ P+   YT+++ G  + 
Sbjct: 665 DDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKL 724

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
             +     V  +  +H++   +   +  +   C+ G    A KLL  ++
Sbjct: 725 GQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMT 773



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ + +KG  P+L T + L  +L K N+  +  EVY  +       D+  ++ M++  C 
Sbjct: 209 FSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCK 268

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             R  +A G+  +M++ G+ P+V  YN+++   C+   L  A +  ++M     S +L T
Sbjct: 269 GHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLIT 328

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y++ I+   ++ +I+ A  +   M E G  P+   Y +L++G C+  N+  A ++ +  +
Sbjct: 329 YSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDML 388

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
           +  +      L++ +   C+      A  +L     RGL  + G
Sbjct: 389 SKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG 432



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 85/177 (48%)

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +V+ +L+    F  +++   ++S L  +  L+++Y V   +   G+ PDV  +++++ A 
Sbjct: 207 DVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAF 266

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+      A  L+ +M   G + N+ TYN +I    + G ++ A R    M+++ V+P  
Sbjct: 267 CKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSL 326

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            TY+  + GL +   +  A  V  +      +    + +T +   C+ G+   A K+
Sbjct: 327 ITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKI 383



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  V   + +KGL P +     L+ +  + + L+ + +++D +   G   ++  ++ +I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F +    + A+ LF  M + GVAP+  TY +++ GLC+   L  A+    K V   V  
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
           +    S F+  L +      A  +L+ + S+LG   + V+
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEM-SELGFVPNEVV 363


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 218/489 (44%), Gaps = 14/489 (2%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           HS  K+L    Q   +D+V+ +++   +  D   +  ++ +  +  + + A ++ + +  
Sbjct: 167 HSYCKTL----QFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVS 222

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                G    NS+L  L  +G  D A ++F  M   GV      F + I  FC   +L +
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEE 282

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHG-FCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
            L    E+R R    +   V++   + G F +   ++ A + L E+R     PD + Y +
Sbjct: 283 ALRFYKEMRGRR---VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           V   F   G + E   V  +    G  P    Y   + GL  ERR+ +A+EL   +    
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D      LI G     +   A+ FF+ + ++   P + T + L   +C++    +  
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E++  + + + F +  +Y++++   C  G++  A+  + EM  KG+ P++  YNS+++  
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR   +   ++   +M       +L TYN LI  + + G++  A  L   M  + V PDA
Sbjct: 520 CRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDA 579

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            TY  ++ G     N+Q A  V+ K     +  D     S+++  +++   +  F +  +
Sbjct: 580 VTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDE 639

Query: 562 LL-RGLSSD 569
           +L +GL+ D
Sbjct: 640 MLQKGLAPD 648



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 153/337 (45%), Gaps = 2/337 (0%)

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           NS +N   + +++ H +CK  +  E   V+ E+  R   PD + + ++ +     G V  
Sbjct: 154 NSEVNTYTLNIMV-HSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEA 212

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              ++      G+ P    Y   + GL+   R  +A+E+   + +     D    N LIG
Sbjct: 213 AMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIG 272

Query: 340 S-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               + +   A+ F+  M  +   P + + S L     +R + D   E  + +       
Sbjct: 273 GFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMP 332

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   Y +++   C +G + EA  V  EM   G  PDV  YN+L+   C+E  L  A++L 
Sbjct: 333 DGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELL 392

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G   +L T+  LI  +   G IE AL+ F  + ++ + PD  TY +L++G+C++
Sbjct: 393 NEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQ 452

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            +L  A E+++   + ++       S  + S C +G 
Sbjct: 453 GDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 170/421 (40%), Gaps = 50/421 (11%)

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           E +T    + +  +C+  + G+V +++ E+ KR   +    V   +++    +   VE A
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKR--CVFPDVVTHNVMVDARFRAGDVEAA 213

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             ++D +  +  KP  + Y  V +     G   +   V +     GVAP    +   I G
Sbjct: 214 MALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGG 273

Query: 306 LIVERRICEAKELGEVI-----VSGKFTIDDDV-LNALIGSVSSI-DPRSAIVFFNFMIE 358
                  C A EL E +     + G+    D V  + LIG  +   +   A  +   M E
Sbjct: 274 F------CRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMRE 327

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G +P     + +    C+     E + V   + A     D+ +YN +++ LC   RL +
Sbjct: 328 FGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSD 387

Query: 419 AYGVIQEMKRKG-----------------------------------LDPDVSFYNSLME 443
           A  ++ EMK +G                                   L PD+  YN+L++
Sbjct: 388 AEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID 447

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CR+  L  A +LWD M +     N  TY+ILI    E G+++ A      M+ KG+ P
Sbjct: 448 GMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVP 507

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  TY S+++G C+  N+    +   K  +  VM      +T +    + G    A  LL
Sbjct: 508 NIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLL 567

Query: 564 R 564
           +
Sbjct: 568 K 568



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 135/322 (41%), Gaps = 40/322 (12%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALK 175
           D   Y  ++  L + +    A  + NE+K     + P++C   +L+     DG I+ AL+
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLNEMKE--RGVPPDLCTFTTLIHGYCRDGNIEKALQ 425

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            FD +S + +    + +   I   C    LG+   + D++  RE  +    V   ++I  
Sbjct: 426 FFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE--IFPNHVTYSILIDS 483

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C+  +V+ AF  LDE+  +   P+ + Y  + + +   G+V + +  L K R   V P 
Sbjct: 484 HCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
              Y   I G + E ++ EA  L +++ +                  ++ P +  V +N 
Sbjct: 544 LITYNTLIHGYVKEGKMHEAFNLLKIMEN-----------------ENVQPDA--VTYNM 584

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +I        S   N+           E   VYK + A     D  +Y  M++    +G 
Sbjct: 585 IISG-----FSVHGNMQ----------EADWVYKKMGARGIEPDRYTYMSMINGHVVAGN 629

Query: 416 LREAYGVIQEMKRKGLDPDVSF 437
            ++++ +  EM +KGL PD  F
Sbjct: 630 SKKSFQLHDEMLQKGLAPDDKF 651



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 124/282 (43%), Gaps = 37/282 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L  L   R+++  + +L ++K   +  D   +  +I    +  N +KA   F+ 
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  + + + P+I   N+L+  +   G +  A +++D+M  R +  + + + + I   CE 
Sbjct: 430 I--SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING--------------------SVIAVLI-- 232
            ++    + LDE+  +         NS+I G                     V+  LI  
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547

Query: 233 ---IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
              IHG+ K  ++ EAF +L  +     +PD + Y ++   F + G++ E + V KK   
Sbjct: 548 NTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGA 607

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            G+ P    Y   I G +V     ++ +L + ++      DD
Sbjct: 608 RGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDD 649


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 220/490 (44%), Gaps = 26/490 (5%)

Query: 65  SLALGFFNW---ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           S AL FF+     + +PN     +++ +++  L    +I    ++L ++  + +      
Sbjct: 166 SEALDFFHQMFETTCRPNV----VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDE 179
           Y  I+  + +  +T  A ++  +++     I P   I ++++  L  DG   +A  +F E
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCK 238
           M  +G+      +   I  FC + +      +L E+ +R+   I+  V+    +I+ F K
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK---ISPDVVTYNALINAFVK 337

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +  EA ++ DE+  R   P+ I Y  + + F     +   E +       G +P    
Sbjct: 338 EGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT 397

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMI 357
           +   I G    +RI +  EL   +       D    N LI     + D  +A+     MI
Sbjct: 398 FNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMI 457

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-----------NDYFTDMESYNVM 406
             G  P + T   L   LC   K  + +E++KV+             N    D+++YN++
Sbjct: 458 SSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNIL 517

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S L   G+  EA  + +EM  +G+ PD   Y+S+++  C++  L  A +++D M +   
Sbjct: 518 ISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF 577

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S N+ T+  LI+ + + G ++  L LF  M  +G+  +A TY +L+ G  +  N+  A +
Sbjct: 578 SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD 637

Query: 527 VFNKSVNHDV 536
           +F + ++  V
Sbjct: 638 IFQEMISSGV 647



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 184/438 (42%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKL--GLHPDVVTFT 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA     ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y     G IV+                             G     D  SA+
Sbjct: 214 GLQPTQITY-----GTIVD-----------------------------GMCKKGDTVSAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A++L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ +I  F +   ++ A  +F+ M  KG +P+  T+ +L++G C    +    E+ +
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++   +  +T +      G    A  LL+     GL  D+   D+   LL  L 
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKVMQKS 494



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 179/424 (42%), Gaps = 50/424 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +L+  L  +G I  A+ + D M   G++ + I +G  +   C   K G  +S L+ +RK
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC---KKGDTVSALNLLRK 244

Query: 218 RE--NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            E  + +I   VI   II   CK  R  +A  +  E++ +   PD   Y  +   F   G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              + E +L++  +  ++P    Y   I   + E +  EA+EL                 
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL----------------- 347

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                            ++ M+ +G +P   T S++    CK+N+ D    ++ +++   
Sbjct: 348 -----------------YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ ++N ++   C + R+ +   ++ EM   GL  D + YN+L+        L  A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPD 504
            L  +M +SG   ++ T + L+    + G+++ AL +F  M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY  L+ GL  E     A E++ +  +  ++      S+ +  LC++     AT++  
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFD 570

Query: 565 GLSS 568
            + S
Sbjct: 571 SMGS 574



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 51/393 (12%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N+L+     +G    A +++DEM  RG+  +TI +   I  FC+  +L    
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            M   +  +  S     +    +I G+C  KR+++  ++L E+       D   Y  +  
Sbjct: 381 HMFYLMATKGCS--PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F L+G +     +L++    G+ P        + GL    ++ +A E+ +V+   K  +
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 330 D---------DDV--LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           D          DV   N LI G ++      A   +  M  +G VP   T S++   LCK
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +++ DE  +++  + +  +  ++ ++  +++  C +GR+ +   +  EM R+G+      
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI------ 612

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
                                          N  TY  LI  F +VG I GAL +F  M+
Sbjct: 613 -----------------------------VANAITYITLICGFRKVGNINGALDIFQEMI 643

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             GV PD  T  ++L GL  +  L+ A  +  K
Sbjct: 644 SSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 224/517 (43%), Gaps = 47/517 (9%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D+  +   +  L + +  ++A ++F++++  C D  P++   N+L+A     G  D AL 
Sbjct: 88  DTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC-DCAPDVVAYNTLIAGYCKAGDGDRALD 146

Query: 176 MFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLII 233
           MF  +   G  + + + F   +   C+ ++    L++  E+     + +   V +   +I
Sbjct: 147 MFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEML---GAGLKADVNVCNTLI 203

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           H  C+   + +A ++L  +    C  D   Y I+       G + E    ++  R  G A
Sbjct: 204 HCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCA 263

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
               +Y   I G I   R+ EA +L E  ++ +   D    N LI    S     A+  F
Sbjct: 264 LSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEEALTLF 323

Query: 354 NFMIEKGRVPTLSTLS--------------------NLSKNLC---------------KR 378
               + G V  + T S                    N+ K  C               K+
Sbjct: 324 QEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQ 383

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K DE +E+ + ++      D  +YN+++  L + GR  +AY     MKR+   PDV  Y
Sbjct: 384 GKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTY 443

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+    +      A  L+D+M A+ C  +L T+  LI   ++ G +E AL     +++
Sbjct: 444 NTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVK 503

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
            G AP++  Y +L+ G C+   +   +E+F   +           +  ++   RRGH  +
Sbjct: 504 MGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSM 563

Query: 559 ATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMA 592
           A +LL+ +  + GH+    ++ +L++SL+ A +VE A
Sbjct: 564 AMELLQEMVRE-GHTPALATYNVLIRSLSMAGQVEDA 599



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 179/462 (38%), Gaps = 41/462 (8%)

Query: 107 LKQ---VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
           LKQ    K N ++ D+     ++  L +      A +VF E+          +CN+L+  
Sbjct: 151 LKQEGSCKPNAVSFDT-----LVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHC 205

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----- 218
               G +  A ++   M+          +G+ +   C   ++ +V S ++  R       
Sbjct: 206 TCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALS 265

Query: 219 ------------------------ENSMINGSVIAVL---IIHGFCKGKRVEEAFKVLDE 251
                                   E++M   SV  V    ++   CK K++EEA  +  E
Sbjct: 266 AVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEEALTLFQE 325

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
                   D   Y  + + F   G   +   V    +K G  P T  Y   I  L  + +
Sbjct: 326 AEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGK 385

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
           + EA EL E +       D    N +I  +SS      A  FF  M  +   P + T + 
Sbjct: 386 VDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNT 445

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   L K  ++DE  +++  + AN    D+ ++  ++  L  +GR+ +A      + + G
Sbjct: 446 LLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 505

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
             P+   YN+L+   CR   +    +L+  M    C  +  TY IL+  FS  G    A+
Sbjct: 506 HAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 565

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            L   M+ +G  P   TY  L+  L     ++ A+ +F + +
Sbjct: 566 ELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMI 607



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 163/386 (42%), Gaps = 40/386 (10%)

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            +GV  S +     I  F     L   + MLD++R R N     +V     +H  C+ +R
Sbjct: 46  QKGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMR-RGNFCQPDTVAFTAAMHWLCEVRR 104

Query: 242 VEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG-VAPRTNDY 299
           VE+A  + D++R   +C PD +AY  +   +   G       + ++ ++ G   P    +
Sbjct: 105 VEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSF 164

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI--------------- 344
              ++ L    R  +A  + + ++      D +V N LI     +               
Sbjct: 165 DTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTA 224

Query: 345 -----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKN----------------LCKRNKSDE 383
                D  +  +  N     G++  +++   L+++                  +  +  E
Sbjct: 225 HACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAE 284

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             ++++     +   D+ +YN++++ LC S +L EA  + QE ++ G+  DV  Y+ LM+
Sbjct: 285 ATQLFESTMTKESVPDVFTYNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMD 343

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A  +      A +++  M  +GC  +   YN+LIS   + G+++ AL L  +M  KG+ P
Sbjct: 344 AFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMP 403

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFN 529
           D  TY  +++ L      + A+  F 
Sbjct: 404 DCRTYNIVIDVLSSCGRYEKAYSFFG 429



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 38/220 (17%)

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGR------------------------------- 415
            YK L       D  +   MV  +C  GR                               
Sbjct: 5   TYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFG 64

Query: 416 ----LREAYGVIQEMKRKGL-DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGN 469
               L  A G++ +M+R     PD   + + M   C    +  A  L+D M  +  C+ +
Sbjct: 65  RAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPD 124

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  YN LI+ + + G+ + AL +F  + ++G   P+A ++ +L+  LC+ +    A  VF
Sbjct: 125 VVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVF 184

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            + +   +    ++ +T +   CR G    A +LL  +++
Sbjct: 185 QEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTA 224


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 129/561 (22%), Positives = 244/561 (43%), Gaps = 80/561 (14%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  +  +Y+ +LK L  + +     S+L++++ N +  D   Y  +I    +GK  +KA 
Sbjct: 138 FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKAL 197

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            + NE++ +           L+      G +D A+ +  EM H+G+E   I +   I  F
Sbjct: 198 QLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGF 257

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+  +L +  ++ DEV +R +S    ++    +I GFCK  R++EA ++ + +  R  +P
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPC--AITYNTLIRGFCKLGRLKEASEIFEFMMERGVRP 315

Query: 260 DFIAYRIV----------AEEFKLMGSVFERE---------------------------V 282
           +   Y  +           E  +L+  + +++                           V
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIV 375

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI-G 339
            L KKR+    P    Y   + GL  +  + EA +L  +++      D DV+  NALI G
Sbjct: 376 ELMKKRR--TRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                    A+  ++ ++EK     + T + L  +  K    ++ +E++K +S +    +
Sbjct: 434 LCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPN 493

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
            ++Y  M+   C +G L  A G++ +M+   L P V  YN L+ + C++  L  A +L++
Sbjct: 494 SDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFE 553

Query: 460 Q-----------------------------------MFASGCSGNLKTYNILISKFSEVG 484
           +                                   M  +G S +L TY+ LI++F ++G
Sbjct: 554 EMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLG 613

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            ++ A+  F  M++ G  PDA    S+L+    +       E   K V+ DV+L + +  
Sbjct: 614 YLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTC 673

Query: 545 TFMISLC-RRGHFLVATKLLR 564
           T M  +C   G+  +A +LLR
Sbjct: 674 TVMDYMCSSSGNMDIAKRLLR 694



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 219/492 (44%), Gaps = 58/492 (11%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV---LASDGYIDNALKMFDEMS 181
           ++ +L++ +N + AFS + ++      I     + LL     +   G+    L +   M 
Sbjct: 78  LMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLAL---ML 134

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG  F+   + + +   C N + G+ +S+L E+R  +NS++   V    +I GFC+GK 
Sbjct: 135 KRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMR--QNSLMPDVVSYNTVIRGFCEGKE 192

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +E+A ++ +E++   C    + + I+ + F   G + E   +LK+ +  G+      Y  
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTS 252

Query: 302 FILGLIVERRICEAKEL--GEVIVSGKFTIDDD----VLNALIGSVSSIDP-RSAIVFFN 354
            I      R  C+  EL  G+ +        D       N LI     +   + A   F 
Sbjct: 253 LI------RGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFE 306

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           FM+E+G  P + T + L   LC   K+ E +++  ++   D   ++ +YN++++ LC   
Sbjct: 307 FMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDS 366

Query: 415 RLREAYGVIQEMKRK--------------GL-----------------------DPDVSF 437
            + +A  +++ MK++              GL                       DPDV  
Sbjct: 367 LVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVIS 426

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L+   C+ + L  A  ++D +     +G++ T NIL++   + G++  A+ L+  + 
Sbjct: 427 FNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQIS 486

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
              + P++ TYT++++G C+   L  A  +  K    ++  +    +  + SLC++G   
Sbjct: 487 NSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLD 546

Query: 558 VATKLLRGLSSD 569
            A +L   +  D
Sbjct: 547 QAWRLFEEMQRD 558



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N +   V S +   A  F+  M+E        +LS L +   +  K+     V  ++   
Sbjct: 77  NLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKR 136

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  ++ +YN+++  LC +    +A  +++EM++  L PDV  YN+++   C    L  A
Sbjct: 137 GFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKA 196

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L ++M  SGCS +L T+ ILI  F + G+++ A+ L   M  KG+  D   YTSL+ G
Sbjct: 197 LQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRG 256

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            C    L     +F++ +           +T +   C+ G    A+++ 
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIF 305



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 103/235 (43%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+   N M   G   +L T   L    CK  K DE + + K +       D+  Y  ++ 
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G L     +  E+  +G  P    YN+L+   C+   L+ A ++++ M   G   
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRP 315

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI     VG+ + AL+L + ML+K   P+  TY  ++  LC+++ +  A E+ 
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIV 375

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
                          ++ +  LC +G    A+KLL  +  D  ++D  VI   +L
Sbjct: 376 ELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNAL 430



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 19/299 (6%)

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G    +   + L K LC+  +  + V + + +  N    D+ SYN ++   C   
Sbjct: 132 LMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGK 191

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L +A  +  EM+  G    +  +  L++A C+   +  A  L  +M   G   +L  Y 
Sbjct: 192 ELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYT 251

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  F + GE++    LF  +LE+G +P A TY +L+ G C+   L+ A E+F   +  
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMER 311

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
            V       +  +  LC  G    A +LL  +    +  +  ++ I++  L     V  A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADA 371

Query: 593 IEHIKWIQE-----------------SSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634
           +E ++ +++                  +   L E S  L+  L  SSY +P ++  +AL
Sbjct: 372 LEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNAL 430


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 210/490 (42%), Gaps = 8/490 (1%)

Query: 90  ILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +LK L  +++++ A D +L ++       D   Y  +I    +    +KA+++F E+   
Sbjct: 131 LLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMD- 189

Query: 149 CEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            + I P +    +++  L     +D A  +F +M  RGV+     +   I  +    K  
Sbjct: 190 -QGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWK 248

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +V+ ML+E+    + +    +   L++   CK  R  EA    D +  +  KPD   Y I
Sbjct: 249 EVVQMLEEMST--HGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAI 306

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +   +   G++ E    L      GV+P    +         +  I EA  +   +    
Sbjct: 307 LLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQG 366

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            + D     ALI ++  +     A++ FN MI +G  P +   S+L   LC   K ++  
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAE 426

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E++  +       D   +N ++  LC  GR+ EA  +I  M R G+ P+V  YN+L+   
Sbjct: 427 ELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGH 486

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A KL D M ++G   N  TY IL+  + +   ++ A  LF  ML KGV P  
Sbjct: 487 CLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVV 546

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY ++L GL Q      A E++   +N          +  +  LC+      A K+ R 
Sbjct: 547 ATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRR 606

Query: 566 LSSDLGHSDS 575
           L S     DS
Sbjct: 607 LCSKDPQLDS 616



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 178/437 (40%), Gaps = 80/437 (18%)

Query: 170 IDNALKMFDEMSH---------------------------RGVEFST------------- 189
           +D ALK+FDE+ H                           R V   T             
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 190 -IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
              + + I  FC   +L    +    + K     +N  VI+ L + G C  KRV+EA  +
Sbjct: 90  ACTYSILIGCFCRMGRLEHGFAAFGLILK-TGWRVNVIVISQL-LKGLCDAKRVDEATDI 147

Query: 249 LDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           L  LR+ E  C PD +AY  V   F   G V +   +  +    G+ P    Y   I GL
Sbjct: 148 L-LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGL 206

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                 C+A+                           +D    +  F  MI++G  P   
Sbjct: 207 ------CKAQ--------------------------VVDRAKGV--FQQMIDRGVKPDNG 232

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L        K  E+V++ + +S +    D  +Y +++ +LC +GR REA      M
Sbjct: 233 TYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSM 292

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
            RKG+ PDV+ Y  L+     +  L       D M  +G S N + +NI+   +++   I
Sbjct: 293 FRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMI 352

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           E A+ +F+ M ++G++PD  ++ +L++ LC+   +  A   FN+ +N  V     + S+ 
Sbjct: 353 EEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSL 412

Query: 547 MISLCRRGHFLVATKLL 563
           +  LC  G +  A +L 
Sbjct: 413 VYGLCTVGKWEKAEELF 429



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/448 (18%), Positives = 196/448 (43%), Gaps = 9/448 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L  ++ ++    V +Q+    +  D+  Y  +I   +     ++   +  E
Sbjct: 197 VTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEE 256

Query: 145 VKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +   + P+      LL  L  +G    A   FD M  +G++     + + +  +   
Sbjct: 257 M--STHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATK 314

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++ S LD +    N +     I  ++   + K   +EEA  + +++R +   PD +
Sbjct: 315 GALSEMHSFLDLMVG--NGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVV 372

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           ++  + +    +G V +  +   +    GV P    +   + GL    +  +A+EL   +
Sbjct: 373 SFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEV 432

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     +D    N L+ ++ + + R   A    + MI  G  P + + + L    C   +
Sbjct: 433 LDQGICVDAVFFNTLMCNLCN-EGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE  ++  V+ +N    +  +Y +++   C + R+ +AY + +EM  KG+ P V+ YN+
Sbjct: 492 IDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNT 551

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++    +      A +L+  M  S    ++ TYNI+++   +   ++ A ++F  +  K 
Sbjct: 552 ILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKD 611

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVF 528
              D+ T+  ++  L +    + A ++F
Sbjct: 612 PQLDSVTFNIMIGALLKGGRKEDAMDLF 639



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 180/410 (43%), Gaps = 20/410 (4%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I N +    A    I+ A+ +F++M  +G+    + FG  I   C   KLG+V    D+ 
Sbjct: 338 IFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALC---KLGRV----DDA 390

Query: 216 RKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
             + N MIN  V   +     +++G C   + E+A ++  E+  +    D + +  +   
Sbjct: 391 VLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCN 450

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G V E + ++    ++GV P    Y   + G  +  RI EA +L +V+VS     +
Sbjct: 451 LCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPN 510

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
           +     L+ G   +     A   F  M+ KG  P ++T + +   L +  +  E  E+Y 
Sbjct: 511 EFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYL 570

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +  +    D+ +YN++++ LC +  + EA+ + + +  K    D   +N ++ A  +  
Sbjct: 571 NMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGG 630

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDAT 506
               A  L+  + A G   ++ TY ++     E   +GE +G   LF  M + G AP++ 
Sbjct: 631 RKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDG---LFSAMEKSGTAPNSH 687

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
              +L+  L    ++  A     K    +  L  S  ++ +ISL  RG +
Sbjct: 688 MLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEAST-TSMLISLYSRGEY 736



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 181/429 (42%), Gaps = 7/429 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  +L   +    ++ + S L  +  N ++ +  ++  +  +  +    ++A  +FN  K
Sbjct: 304 YAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFN--K 361

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              + + P++ +  +L+  L   G +D+A+  F++M + GV  +   F   ++  C   K
Sbjct: 362 MRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGK 421

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
             +   +  EV   +  +   +V    ++   C   RV EA +++D +     +P+ I+Y
Sbjct: 422 WEKAEELFFEVL--DQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISY 479

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIV 323
             +     L G + E   +L      G+ P    Y   + G    RR+ +A  L  E+++
Sbjct: 480 NTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLM 539

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
            G   +       L G   +     A   +  MI       + T + +   LCK N  DE
Sbjct: 540 KGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDE 599

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             ++++ L + D   D  ++N+M+  L   GR  +A  +   +   GL PDV  Y  + E
Sbjct: 600 AFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAE 659

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
               E  L     L+  M  SG + N    N L+ +    G+I  A    + + EK  + 
Sbjct: 660 NLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSL 719

Query: 504 DATTYTSLL 512
           +A+T + L+
Sbjct: 720 EASTTSMLI 728


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 221/510 (43%), Gaps = 56/510 (10%)

Query: 77  QPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN     ++Y +I+  +  +   ++A++ + K  +V+ I  +  +Y  II  L +    
Sbjct: 214 QPN----QITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRH 269

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             A ++F E++   ++I P+I   N ++      G   +A ++  EM  R +    + F 
Sbjct: 270 SDAHNLFIEMQE--KEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFS 327

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I  F +  K  +   + DE+  R  S+I  +V    +I GFCK  R++ A  +     
Sbjct: 328 ALINAFVKEGKFFEAEELYDEMLPR--SIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTP 385

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            + C PD I +  +   +     V +   +L +  + G+   T  Y   I G       C
Sbjct: 386 TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF------C 439

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +  +L             D+L  +I S                   G  P + T + L  
Sbjct: 440 QVGDLNAA---------QDLLQEMISS-------------------GVCPNVVTCNTLLD 471

Query: 374 NLCKRNKSDELVEVYKVLSA-----------NDYFTDMESYNVMVSFLCTSGRLREAYGV 422
            LC   K  + +E++K +             N    D+++YN+++  L   G+  EA  +
Sbjct: 472 GLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEEL 531

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM  +G+ PD   Y+S+++  C++  L  A +++D M +   S ++ T+N LI+ + +
Sbjct: 532 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCK 591

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G ++  L LF  M ++G+  DA TY +L+ G  +  N+  A ++F + ++  V      
Sbjct: 592 AGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTIT 651

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
           +   +  L  +     A  +L  L   +G+
Sbjct: 652 IRNMLTGLWSKEELERAVAMLEDLQMSVGY 681



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 186/445 (41%), Gaps = 80/445 (17%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+ V+   G  D  + +  +M    +  +   F + +  FC  +KL   LS   ++ K  
Sbjct: 87  LMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLG 146

Query: 220 NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               + +V+    ++HG C   R+ EA  +  ++    CKP+ + +  +       G V 
Sbjct: 147 ---FHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVV 199

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL- 337
           E   +L +  + G+ P    Y   + G+          ++G+ + +         LN L 
Sbjct: 200 EAVALLDRMLEDGLQPNQITYGTIVDGMC---------KMGDTVSA---------LNLLR 241

Query: 338 -IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
            +  VS I P   +V +N +I+                L K  +  +   ++  +   + 
Sbjct: 242 KMEEVSHIIPN--VVIYNTIID---------------GLWKDGRHSDAHNLFIEMQEKEI 284

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F D+ +YN M++  C SGR  +A  ++QEM  + ++PDV  +++L+ A  +E     A++
Sbjct: 285 FPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEE 344

Query: 457 LWDQMF-----------------------------------ASGCSGNLKTYNILISKFS 481
           L+D+M                                      GCS ++ T+N LI+ + 
Sbjct: 345 LYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYC 404

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
               ++  ++L H M E G+  +  TYT+L+ G CQ  +L AA ++  + ++  V     
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV 464

Query: 542 ILSTFMISLCRRGHFLVATKLLRGL 566
             +T +  LC  G    A ++ + +
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAM 489



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 107/235 (45%), Gaps = 23/235 (9%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F +M+    +P++     L   + +  + D ++ ++K +       +  S+ +++ 
Sbjct: 65  AIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMK 124

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C+  +L  A     ++ + G  P V  +N+L+   C ED +  A  L+ QM    C  
Sbjct: 125 CFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKP 180

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+  L++     G +  A+ L   MLE G+ P+  TY ++++G+C+  +  +A  + 
Sbjct: 181 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 240

Query: 529 NK--SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
            K   V+H +                  + ++   ++ GL  D  HSD+H + ++
Sbjct: 241 RKMEEVSHII-----------------PNVVIYNTIIDGLWKDGRHSDAHNLFIE 278


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 205/473 (43%), Gaps = 45/473 (9%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LAL  F +A +  P FTH+  +YHSIL  LS +R  + ++S++  ++ +   +      F
Sbjct: 62  LALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLF 121

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEM 180
           I   L++       +     +     D G +      N+LL VL  +   D    MF   
Sbjct: 122 I--DLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNS 179

Query: 181 SHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
               G+  +     + +   C+   +     +LDE+      ++   V    I+ G+   
Sbjct: 180 KESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAM--GLVPNLVTYTTILGGYVAR 237

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             +E A +VL+E+  R   PD I Y ++ + +  +G   E   V+    K  + P     
Sbjct: 238 GDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN---- 293

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
            E   G+++ R +C+ K+ GE                            A   F+ M+++
Sbjct: 294 -EVTYGVMI-RALCKEKKSGE----------------------------ARNMFDEMLDR 323

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
             +P  S    +   LC+ +K DE   +++ +  N+   D    + ++ +LC  GR+ EA
Sbjct: 324 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEA 383

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +  E   KG  P +  YN+L+   C +  L  A +LWD MF   C  N  TYN+LI  
Sbjct: 384 RKLFDEFD-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEG 442

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            S+ G ++  +R+   MLE G  P+ TT+  L EGL +    + A ++ + +V
Sbjct: 443 LSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAV 495



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 94/204 (46%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + T + L K LCK+N  +   +V   + A     ++ +Y  ++      G +  A
Sbjct: 184 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESA 243

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V++EM  +G  PD   Y  LM+  C+      A  + D M  +    N  TY ++I  
Sbjct: 244 KRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRA 303

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             +  +   A  +F  ML++   PD++    +++ LC++  +  A  ++ K + ++ M  
Sbjct: 304 LCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 363

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
            ++LST +  LC+ G    A KL 
Sbjct: 364 NALLSTLIHWLCKEGRVSEARKLF 387



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/105 (20%), Positives = 48/105 (45%)

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G + N+ T N+L+    +  +IE A ++   +   G+ P+  TYT++L G     ++++A
Sbjct: 184 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESA 243

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             V  + ++          +  M   C+ G F  A  ++  +  +
Sbjct: 244 KRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKN 288


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 205/463 (44%), Gaps = 7/463 (1%)

Query: 84  PLSYH--SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           P ++H   IL SL  ++    + S+ K+ + N  T D      ++       +   AFSV
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
              +            N+L+  L   G I  AL   D++  +G + + + +   I   C+
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             +   V  +L   RK E   +   V+    IIH  CK K + +A  +  E+ ++   P+
Sbjct: 181 TGETKAVARLL---RKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPN 237

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  +   F +MG + E   +L + +   + P    +   I  L  E ++  AK +  
Sbjct: 238 VVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLA 297

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           V++      D    N+LI     ++  ++A   F  M + G  P + T + +   LCK  
Sbjct: 298 VMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEK 357

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE + +++ +   +   D+ +Y  ++  LC +  L  A  + ++MK +G+ PDV  Y 
Sbjct: 358 MVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYT 417

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++A C+   L  AK+ + ++   G   N++TYN++I+   +      A+ L   M  K
Sbjct: 418 ILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGK 477

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           G  PDA T+ +++  L ++     A ++  + +   +  AR +
Sbjct: 478 GCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKV 520



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 211/463 (45%), Gaps = 33/463 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++       ++     V   +  + +T +   Y  +I  L + K   +A S+F E
Sbjct: 309 VTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEE 368

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K+  +++ P+I    SL+  L  + +++ A+ +  +M  +G++     + + +   C+ 
Sbjct: 369 MKY--KNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 426

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECK 258
            +L         +      ++ G  + V    ++I+G CK     EA  +  ++  + C 
Sbjct: 427 GRLENAKEFFQRL------LVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCM 480

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD I ++ +      + ++FE++   K ++ L         RE I   + E R    KE 
Sbjct: 481 PDAITFKTI------ICALFEKDENDKAEKIL---------REMIARGLQEARKVRLKEA 525

Query: 319 GEVI-VSGKFTIDDDVLNA---LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             V+ V  K  I  DV+     + G     + + A   F  M + G  P +   + +   
Sbjct: 526 KIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDG 585

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK+   DE + +++ +   + F ++ +Y  ++  LC +  L  A  +++EMK  G+ PD
Sbjct: 586 LCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPD 645

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y  L++  C+   L  AK+++ ++   G   N++ Y  +I++  + G  + AL L  
Sbjct: 646 VYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQX 705

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            M +KG  PDA T+  ++  L ++     A ++  + +   +M
Sbjct: 706 KMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLM 748



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 222/507 (43%), Gaps = 52/507 (10%)

Query: 87  YHSILKSLSLSRQI-NAID----SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           Y++I+ SL  ++ + +A D     ++K +  N +T ++ VY F I       + ++AFS+
Sbjct: 206 YNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMG-----HLKEAFSL 260

Query: 142 FNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF-----GV 194
            NE+K   ++I P++C  N+L+  L  +G +  A  +   M    ++   + +     G 
Sbjct: 261 LNEMKL--KNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGY 318

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
           F     +NAK     SM       ++ +         +I G CK K V+EA  + +E++ 
Sbjct: 319 FFLNKVKNAKY-VFYSM------AQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKY 371

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVL-KKKRKLGVAPRTNDYREFILGLIVERRIC 313
           +   PD + Y  + +         ER + L KK ++ G+ P    Y   +  L    R+ 
Sbjct: 372 KNMIPDIVTYTSLIDGL-CKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLE 430

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLS 372
            AKE  + ++   + ++    N +I  +   D    A+   + M  KG +P   T   + 
Sbjct: 431 NAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTII 490

Query: 373 KNLCKRNKSDELVEVYK-----------------------VLSANDYFTDMESYNVMVSF 409
             L +++++D+  ++ +                       V++      D+ +Y  ++  
Sbjct: 491 CALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDG 550

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
                 L+ A  V   M + G+ P+V  Y  +++  C++  +  A  L+++M       N
Sbjct: 551 YFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPN 610

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  LI    +   +E A+ L   M E G+ PD  +YT LL+GLC+   L+ A E+F 
Sbjct: 611 IVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQ 670

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHF 556
           + +     L   + +  +  LC+ G F
Sbjct: 671 RLLVKGYHLNVQVYTAMINELCKAGLF 697



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 185/451 (41%), Gaps = 17/451 (3%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           + +I+ SL+  K+     S+F   KF      P++C  N L+       +I  A  +   
Sbjct: 66  FNYILSSLVNNKHYPTVISLFK--KFESNGATPDLCTLNILMNCFCHLTHITFAFSVLAN 123

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +  RG   + I     I   C   ++ + L   D+V  +   +    V    +I+G CK 
Sbjct: 124 ILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQL--NQVSYRTLINGLCKT 181

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFE--REVVLKKKRKLGVAP 294
              +   ++L +L     KPD + Y  +       KL+G   +   E+++K     G++P
Sbjct: 182 GETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVK-----GISP 236

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFF 353
               Y   + G  +   + EA  L   +       D    N LI ++      ++A +  
Sbjct: 237 NVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVL 296

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M++    P + T ++L       NK      V+  ++ +    ++ +Y  M+  LC  
Sbjct: 297 AVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKE 356

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
             + EA  + +EMK K + PD+  Y SL++  C+   L  A  L  +M   G   ++ +Y
Sbjct: 357 KMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSY 416

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
            IL+    + G +E A   F  +L KG   +  TY  ++ GLC+      A ++ +K   
Sbjct: 417 TILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEG 476

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              M       T + +L  +     A K+LR
Sbjct: 477 KGCMPDAITFKTIICALFEKDENDKAEKILR 507



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 155/340 (45%), Gaps = 5/340 (1%)

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD     I+   F  +  +     VL    K G  P        I GL     I +A   
Sbjct: 96  PDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYF 155

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCK 377
            + +V+  F ++      LI  +       A+      +E   V P +   + +  +LCK
Sbjct: 156 HDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCK 215

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                +  ++Y  +       ++ +YN +V   C  G L+EA+ ++ EMK K ++PDV  
Sbjct: 216 NKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCT 275

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L++A  +E  ++ AK +   M  +    ++ TYN LI  +  + +++ A  +F++M 
Sbjct: 276 FNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMA 335

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHF 556
           + GV P+  TYT++++GLC+E  +  A  +F + + +  M+   +  T +I  LC+  H 
Sbjct: 336 QSGVTPNVRTYTTMIDGLCKEKMVDEAMSLF-EEMKYKNMIPDIVTYTSLIDGLCKNHHL 394

Query: 557 LVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIE 594
             A  L + +       D  S+ ILL +L     +E A E
Sbjct: 395 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKE 434



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 2/238 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+     P     + +  +L        ++ ++K   +N    D+ + N++++
Sbjct: 47  AVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMN 106

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C    +  A+ V+  + ++G  P+    N+L++  C    ++ A    DQ+ A G   
Sbjct: 107 CFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQL 166

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  +Y  LI+   + GE +   RL   +    V PD   Y +++  LC+   L  A +++
Sbjct: 167 NQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLY 226

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           ++ +   +       +  +   C  GH   A  LL  +   L + +  V    +L DA
Sbjct: 227 SEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMK--LKNINPDVCTFNTLIDA 282


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 196/450 (43%), Gaps = 5/450 (1%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +  +L S++  +  + + S+ KQ+    I  ++     +I S         AFSV 
Sbjct: 53  SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVL 112

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            ++             +L+  L  +G I  AL++FD+M+  G +   + +G  I   C  
Sbjct: 113 GDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLC-- 170

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            K+G   + +  +R  E      +V+    II   CK +++ EA  +  ++  +   P+ 
Sbjct: 171 -KVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNN 229

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +     ++G   E   +        + P    +   +  L  E  + +A  + +V
Sbjct: 230 FTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDV 289

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++      D    N+L+ G     +    +  F+ M+ KG VP++ + + L    CK   
Sbjct: 290 MIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQI 349

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D+ + +++ +S      D  +YN ++  LC  GRLR+A  +  EM   G  PD+  Y  
Sbjct: 350 MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 409

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L +  C+   L  A  L   +  +    ++  Y+I++      GE+E A  LF  +  KG
Sbjct: 410 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 469

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + PD  TYT ++ GLCQ+  L  A ++F +
Sbjct: 470 LHPDVRTYTIMINGLCQQGLLAEASKLFGE 499



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 194/443 (43%), Gaps = 9/443 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +  S  ++ ++++ L +  +I     +  ++       D   Y  +I  L +  NT  A 
Sbjct: 120 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAI 179

Query: 140 SVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
                + + NC    P +   ++++  L  D  +  AL +F +M  +G+  +   +   I
Sbjct: 180 RFLRSMEQRNCR---PTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLI 236

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C      + + +   +  R+  ++   +    ++   CK   V +A  V+D +   +
Sbjct: 237 HGLCILGHWKEAIRLFYAMIHRK--IMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSD 294

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            KPD + Y  + +   L   + +   V     + G  P    Y   I G    + + +A 
Sbjct: 295 LKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAM 354

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L E +       D    N LI  +  +   R AI  F+ M+  G++P L T   L   L
Sbjct: 355 GLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK ++  E + + KV+   +   D+  Y++++  +C +G L  A  +  ++  KGL PDV
Sbjct: 415 CKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDV 474

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  ++   C++ LL  A KL+ +M  +GCS N  TYN++   F    E   A++LF  
Sbjct: 475 RTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQE 534

Query: 496 MLEKGVAPDATTYTSLLEGLCQE 518
           ML +G + D +T T L+E L  +
Sbjct: 535 MLSRGFSIDVSTTTLLVEMLSDD 557



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 179/428 (41%), Gaps = 5/428 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  +    +    L ++ +M   G+  +T    + I  FC   +LG   S+L ++ K  
Sbjct: 60  LLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLG 119

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                 +     +I G C   ++ EA ++ D++     +PD + Y  +      +G+   
Sbjct: 120 YQPSTATFTT--LIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTST 177

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
               L+   +    P    Y   I  L  +R++ EA  L   +++   + ++   ++LI 
Sbjct: 178 AIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 237

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +  +   + AI  F  MI +  +P   T + L   LCK     +   V  V+  +D   
Sbjct: 238 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKP 297

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +YN ++   C    + +   V   M RKG  P V  Y +L+   C+  ++  A  L+
Sbjct: 298 DVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLF 357

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   G   +  TYN LI     VG +  A+ LFH M+  G  PD  TY  L + LC+ 
Sbjct: 358 EEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SH 576
             L  A  +       ++     I S  M  +CR G    A  L   LSS   H D  ++
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477

Query: 577 VILLKSLA 584
            I++  L 
Sbjct: 478 TIMINGLC 485



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 169/394 (42%), Gaps = 15/394 (3%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F  + +Q N   + + Y +I+ SL   RQ+    S+   +    I+ ++  Y  +I  L 
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLC 240

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
              + ++A  +F  +      I P+    N+L+  L  +G +  A  + D M    ++  
Sbjct: 241 ILGHWKEAIRLFYAMIH--RKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEE 244
            + +   +   C  +++G+ +++ D + ++      G V +V+    +I+G+CK + +++
Sbjct: 299 VVTYNSLMDGHCLRSEMGKTVNVFDTMVRK------GCVPSVISYTTLINGYCKIQIMDK 352

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  + +E+  +   PD + Y  +      +G + +   +  +    G  P    YR    
Sbjct: 353 AMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFD 412

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
            L    R+ EA  L +VI       D  + + ++ G   + +  +A   F+ +  KG  P
Sbjct: 413 YLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHP 472

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + +   LC++    E  +++  +  N    +  +YN++      +     A  + 
Sbjct: 473 DVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLF 532

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           QEM  +G   DVS    L+E    + L +  K++
Sbjct: 533 QEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQI 566


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 173/386 (44%), Gaps = 30/386 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL      G +D ALK+FD    RG     + +   I  FC+  KL +   +L   R 
Sbjct: 49  NTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ--RM 106

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY-----------RI 266
              +++   V    +++G CK  RV+EA  ++ +   +   P+ I Y           R 
Sbjct: 107 VSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRG 163

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           V+E  KL GSV           K G  P    Y   I GL+ E R+ EA EL   +V   
Sbjct: 164 VSEALKLFGSVL----------KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 213

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D       I G   +     A++    M EKG VP + + + +   LCK  + DE  
Sbjct: 214 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 273

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +   + A     +  S+N ++   C +G+ ++A    +EM ++G+ P V  YN L++  
Sbjct: 274 VLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 333

Query: 446 CR---EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           C+   E  ++ A  L+D M   G   ++ TY+ LI    + G+++ A RL   M  KG  
Sbjct: 334 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI 393

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVF 528
           P+  TY SL+ GLC    +  A E+F
Sbjct: 394 PNVYTYNSLISGLCGLEKVDEALELF 419



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 196/442 (44%), Gaps = 43/442 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL+ L + G + +A  +++ M   G     + +   +  FC+  +L + L + D   K
Sbjct: 14  NALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVK 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    +   V    +I+GFCK  +++EA ++L  +      PD + Y  +       G V
Sbjct: 74  R--GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRV 131

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  +++  K   G +P    Y   I GL  E R                          
Sbjct: 132 DEARMLIVDK---GFSPNVITYSTLISGLCRELR-------------------------- 162

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
              VS      A+  F  ++++G  P + T + L   L K ++ +E  E++  L  +   
Sbjct: 163 --GVSE-----ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLE 215

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  +Y V +  LC +GR+ +A  ++++M  KG  PDV  +N+++   C+E  +  A+ L
Sbjct: 216 PDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVL 275

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC- 516
              M A GCS N  ++N LI      G+ + A+  F  ML++GV P   TY  L++GLC 
Sbjct: 276 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335

Query: 517 --QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGH 572
             QE  ++ A  +F+  +    +      S  +  L + G    A +LL  + +   + +
Sbjct: 336 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395

Query: 573 SDSHVILLKSLADAREVEMAIE 594
             ++  L+  L    +V+ A+E
Sbjct: 396 VYTYNSLISGLCGLEKVDEALE 417



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 194/455 (42%), Gaps = 57/455 (12%)

Query: 58  PYLLTHHSLALGFFNWASQ-----------QPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           P  +T+++L  G  N               +  ++   ++Y+++L       ++  +D  
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC---KVGELDEA 64

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV--------KFNCEDIGPEIC- 157
           LK         D +V R  +P ++        F   +++        +   E++ P++  
Sbjct: 65  LK-------IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVT 117

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK-LGQVLSMLDEV 215
            NSL+  L  +G +D A  +   +  +G   + I +   I   C   + + + L +   V
Sbjct: 118 YNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSV 174

Query: 216 RKR----ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
            K+    E    N      ++I G  K  RV EAF++   L     +PD I Y +  +  
Sbjct: 175 LKQGYEPEVPTYN------ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 228

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG----KF 327
              G V +  ++LK   + G  P    +   I GL  E+R+ EA    EV++SG      
Sbjct: 229 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA----EVLLSGMEAKGC 284

Query: 328 TIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK---RNKSDE 383
           + +    N LI G   +   + A+  F  M+++G  PT+ T + L   LCK     +  E
Sbjct: 285 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + ++  +       D+ +Y+ ++  L  +G+L +A  ++  M+ KG  P+V  YNSL+ 
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
             C  + +  A +L+  M   GC  +  TY  +IS
Sbjct: 405 GLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 174/410 (42%), Gaps = 58/410 (14%)

Query: 52  VARVINPYLLTHHSLALGF-----FNWASQ------QPNFTHSPLSYHSILKSLSLSRQI 100
           V R   P ++T+++L  GF      + A +        N     ++Y+S++  L  + ++
Sbjct: 72  VKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRV 131

Query: 101 NAIDSVL--KQVKVNKITLDSSVYRFIIPSLIQG-KNTQKAFSVFNEV-KFNCEDIGPEI 156
           +    ++  K    N IT     Y  +I  L +  +   +A  +F  V K   E   PE+
Sbjct: 132 DEARMLIVDKGFSPNVIT-----YSTLISGLCRELRGVSEALKLFGSVLKQGYE---PEV 183

Query: 157 --CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
              N L+  L  +  ++ A ++F  +   G+E   I + VFI   C+  ++   L ML +
Sbjct: 184 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 243

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +   E   +   V    +I+G CK KRV+EA  +L  +  + C P+ I++  +       
Sbjct: 244 MD--EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRA 301

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G   +     K+  K GV P    Y   + GL      C+A++ G +             
Sbjct: 302 GKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL------CKARQEGRI------------- 342

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
                       + AI  F+ MIEKGRVP + T S L   L K  K D+   +   + A 
Sbjct: 343 ------------KEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK 390

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
               ++ +YN ++S LC   ++ EA  +   M  KG  PD   Y +++ A
Sbjct: 391 GCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 35/272 (12%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M + G  P   T + L   LC   +  +   +Y+ +    Y  D+ +YN ++   C  G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA------------ 463
           L EA  +     ++G  PDV  YN+L+   C+ D L  A+++  +M +            
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 464 --------------------SGCSGNLKTYNILISKFS-EVGEIEGALRLFHNMLEKGVA 502
                                G S N+ TY+ LIS    E+  +  AL+LF ++L++G  
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P+  TY  L++GL +E  +  AFE+F+  V H +       + F+  LC+ G    A  +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 563 LRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
           L+ +       D  SH  ++  L   + V+ A
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 272


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/503 (23%), Positives = 229/503 (45%), Gaps = 12/503 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  FN   ++ N T     ++ IL SL  S+  + +  + ++++   I  +      +I
Sbjct: 69  AVSLFNRLLRR-NTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 127

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV-LASDGYIDNALKMFDEMSHRGV 185
               Q      AFSVF ++      +   I  + L+  L   G I  A    D++   G 
Sbjct: 128 NCFCQLGLIPFAFSVFAKI-LKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGF 186

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
            F  I +G  I   C   K+G+  + LD +++ + +++  +V+    II   CK K V E
Sbjct: 187 HFDQISYGTLIHGLC---KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           AF +  E+  +   PD + Y  +   F ++G + +   +  K     + P    +   + 
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGR 361
               + ++ E K + ++++      +    N+L+     V  ++   +I  FN M + G 
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI--FNTMAQGGV 361

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + + S +    CK  K DE + ++K +   +   D+ +Y+ ++  L  SGR+  A  
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ +M  +G+ P++  YNS+++A C+   +  A  L  +    G   ++ TY+ILI    
Sbjct: 422 LVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLC 481

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G++E A ++F ++L KG   D   YT +++G C E     A  + +K  ++  +    
Sbjct: 482 QSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAK 541

Query: 542 ILSTFMISLCRRGHFLVATKLLR 564
                ++SL ++    +A KLLR
Sbjct: 542 TYEIIILSLFKKDENDMAEKLLR 564



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 216/471 (45%), Gaps = 26/471 (5%)

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           KNT      FN + ++   I     +S      S+  +D+A+ +F+ +  R        F
Sbjct: 34  KNTH-----FNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEF 88

Query: 193 GVFIWKFCENAKLGQVLSMLD--EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
              +    ++     VL +    E R  + +++N +++    I+ FC+   +  AF V  
Sbjct: 89  NKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL----INCFCQLGLIPFAFSVFA 144

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++      PD I +  +++   L G + +  +   K   LG       Y   I GL    
Sbjct: 145 KILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC--- 201

Query: 311 RICEAKELGEVI--VSGKFTIDDDVL-NALIGSVSSID-PRSAIVFFNFMIEKGRVPTLS 366
           ++ E +   +++  V G     + V+ N +I S+  +     A   F+ M+ KG  P + 
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVV 261

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T S L    C   K  + ++++  +   +   D+ ++N++V+  C  G+++E   V   M
Sbjct: 262 TYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
            ++G+ P+   YNSLM+  C    +  AK +++ M   G + ++++Y+I+I+ F ++ + 
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ LF  M  K + PD  TY+SL++GL +   +  A ++ ++  +  V       ++ 
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSI 441

Query: 547 MISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
           + +LC+      A  LL     +G   D+    ++ IL+K L  + ++E A
Sbjct: 442 LDALCKTHQVDKAIALLTKFKDKGFQPDIS---TYSILIKGLCQSGKLEDA 489



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 187/418 (44%), Gaps = 3/418 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +++ ++ K L L  QI        +V       D   Y  +I  L +   T+ A  +   
Sbjct: 156 ITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQR 215

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           V  N       + N+++  +     ++ A  +F EM  +G+    + +   I  FC   K
Sbjct: 216 VDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGK 275

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + + +++   EN   +     +L+ + FCK  +++E   V D +  +  KP+F+ Y
Sbjct: 276 LKDAIDLFNKMI-LENIKPDVYTFNILV-NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + + L+  V + + +     + GV P    Y   I G    ++  EA  L + +  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 325 GKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D    ++LI  +S     S A+   + M ++G  P + T +++   LCK ++ D+
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDK 453

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + +        +  D+ +Y++++  LC SG+L +A  V +++  KG + DV  Y  +++
Sbjct: 454 AIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQ 513

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
             C E L   A  L  +M  +GC  + KTY I+I    +  E + A +L   M+ +G+
Sbjct: 514 GFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 222/505 (43%), Gaps = 31/505 (6%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGF--FNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           + L+P L + ++N  +       LGF  F W +++ +F  S ++++ ++  L+     + 
Sbjct: 56  EKLAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLAKDDGFDT 114

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI--CNS 159
              +L+++K + I +    +  +I +  +    +KA   F ++K F C+   P++   NS
Sbjct: 115 YWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCK---PDVFTYNS 171

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L V+        AL ++++M       +   F + +   C+N K    L M DE+ ++ 
Sbjct: 172 ILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK- 230

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   ++I  +I+ G C+ KR ++  ++L+ +++  C PD I    + + F  +G + E
Sbjct: 231 -GIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDE 289

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L+   K G       Y   I GL   +R  E +E    +       D  +   LI 
Sbjct: 290 AFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIR 349

Query: 339 --GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
               V  +D   A+   N M ++G  P     + L K  C     D+   +   +S ND 
Sbjct: 350 GFCEVGMVD--YALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDC 407

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F    +Y +++  +C +G L EA  +  +M+  G  P +  +N+L++  C+   L  A+ 
Sbjct: 408 FPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARH 467

Query: 457 LWDQM-----------FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           L+ +M            + G    + T N     F  V   E A R+   M++ G  P +
Sbjct: 468 LFYKMEIGKNPSLFLRLSQGADRVMDTAN----GFHRVDREEDAFRVLDQMVKNGCTPSS 523

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  L+   C++  L  AF ++ K
Sbjct: 524 AVYKCLMTWSCRKGKLSVAFSLWLK 548



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 175/403 (43%), Gaps = 42/403 (10%)

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E  K  N  I     +VLI   + K    E+A +   +++   CKPD   Y        +
Sbjct: 120 EELKNSNIQIPPPTFSVLIA-AYAKSGMAEKAVESFGKMKDFGCKPDVFTYN------SI 172

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +  + ++EV                   F+L L V  ++ +   L        F I   +
Sbjct: 173 LHVMVQKEV-------------------FLLALAVYNQMLK---LNYNPNRATFVI---L 207

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LN L  +  + D   A+  F+ M +KG  P     + +   LC+  ++D++  +   +  
Sbjct: 208 LNGLCKNGKTDD---ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV 264

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D  + N ++   C  G++ EA+ ++Q  +++G    +  Y+SL++   R      
Sbjct: 265 SGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDE 324

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
            ++   +MF +G   ++  Y ILI  F EVG ++ AL + ++M ++G++PD   Y +L++
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIK 384

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
           G C    L  A  +  +   +D        +  +  +CR G    A ++   +  +LG S
Sbjct: 385 GFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM-ENLGCS 443

Query: 574 DSHVI---LLKSLADAREVEMAIEHIKWIQE--SSPTMLQEIS 611
            S +    L+  L  A E+E A  H+ +  E   +P++   +S
Sbjct: 444 PSIMTFNALIDGLCKAGELEEA-RHLFYKMEIGKNPSLFLRLS 485



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N +++   ++D      K+ +++  S       T+++LI+ +++ G  E A+  F  M 
Sbjct: 99  HNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMK 158

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           + G  PD  TY S+L  + Q+     A  V+N+ +  +    R+     +  LC+ G   
Sbjct: 159 DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTD 218

Query: 558 VATKLLRGLSSDLGHSDS--HVILLKSLADAREVE 590
            A K+   ++      ++  + I+L  L  A+  +
Sbjct: 219 DALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 203/488 (41%), Gaps = 77/488 (15%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           + FF WA  Q ++ H  LSY+ +L+ L+ S + + +      +       ++  Y +++ 
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           SL Q +  ++A SV                                   F  M+ +G   
Sbjct: 61  SLCQAQRFEEARSV-----------------------------------FRGMAAQGCSP 85

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEV---RKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           +   + + I   C   K+ +   +L+E+     + N +  GS+++     G CK  +++E
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS-----GLCKMGKLKE 140

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +   +  R C PD + Y ++ + F   G + E   + ++  + G  P    Y   + 
Sbjct: 141 AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLS 200

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G    R+             G+F           G V S+        F  M+ +G VP 
Sbjct: 201 GF--SRK-------------GEF-----------GRVQSL--------FKDMLRQGCVPN 226

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + T +NL    CK     E   ++  + +     D+ SYN ++  +C+ G+  EA  +++
Sbjct: 227 IFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLR 286

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM R G+ PD+  YN L++   +   L  A KL+ ++  SG   +  +Y+ +I      G
Sbjct: 287 EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAG 346

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           ++  A  +F +M+  G APDA     L+ GLC+   L  + E+F   V  + +      +
Sbjct: 347 KVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYN 406

Query: 545 TFMISLCR 552
             M  LC+
Sbjct: 407 LLMYKLCK 414



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +N M+  G VP   T   L ++LC+  + +E   V++ ++A     ++ SY+++++ LC 
Sbjct: 40  YNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             ++ EA  ++ EM   G  P+V  Y SL+   C+   L+ A  L+ +M   GC  +   
Sbjct: 100 GQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV 159

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN+LI  FS+ G++  A RLF  MLEKG  P   TY SLL G  ++        +F   +
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML 219

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
               +      +  +   C+ G  + A +L 
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 87/182 (47%)

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L K  + D +   Y  + A     +  +Y  ++  LC + R  EA  V + M  +G  P+
Sbjct: 27  LAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPN 86

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y+ L+   CR   +  A +L ++M   G   N+ TY  L+S   ++G+++ A+ LF 
Sbjct: 87  VFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS 146

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M+ +G  PD   Y  L++G  ++ ++  A+ +F + +    +      ++ +    R+G
Sbjct: 147 RMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKG 206

Query: 555 HF 556
            F
Sbjct: 207 EF 208


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 181/383 (47%), Gaps = 9/383 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++ VL  +G +  A      M + GV+ + + +   I  +C   ++     +LD ++ 
Sbjct: 240 NIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKN 299

Query: 218 R---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R    +S   GS+I+     G CKG ++EEA  +L++++     P  + Y  + + +   
Sbjct: 300 RGVEPDSYTYGSLIS-----GMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNK 354

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G + +      +  +  + P  + Y   I  L +E ++ EA  + + +       D    
Sbjct: 355 GDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITY 414

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI G     + + A    + MI KG  PTL T ++L   L KRN+     ++++ +  
Sbjct: 415 NILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR 474

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+  +N ++   C +G L  A+ +++EM ++ + PD   YN+LM+  CRE  +  
Sbjct: 475 EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEE 534

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A++L  +M   G   +  +YN LIS +S+ G+I  A  +   ML  G  P   TY +L++
Sbjct: 535 ARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQ 594

Query: 514 GLCQETNLQAAFEVFNKSVNHDV 536
           GLC+      A E+  + V+  +
Sbjct: 595 GLCKNQQGDLAEELLKEMVSKGI 617



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 200/430 (46%), Gaps = 14/430 (3%)

Query: 94  LSLSRQINAIDSV-LKQVKVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCE 150
           LSL  ++N  ++V +   ++ ++ + S+VY F  +I  L +    +KA      +    E
Sbjct: 208 LSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM----E 263

Query: 151 DIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           ++G  P +   N+++    S G ++ A  + D M +RGVE  +  +G  I   C+  KL 
Sbjct: 264 NLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLE 323

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L++++  E  ++  +V    +I G+C    + +AF   DE+  R   P    Y +
Sbjct: 324 EASGILEKMK--EIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL 381

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +     L G + E + ++K     G+ P +  Y   I G        +A  L + ++S  
Sbjct: 382 LIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKG 441

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                    +LI  +S  +  ++A   F  +I +G  P L   + L    C     D   
Sbjct: 442 IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAF 501

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            + K +   +   D  +YN ++   C  G++ EA  +++EMKR+G+ PD   YN+L+   
Sbjct: 502 ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +   +  A  + D+M + G +  L TYN LI    +  + + A  L   M+ KG+ PD 
Sbjct: 562 SKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDD 621

Query: 506 TTYTSLLEGL 515
           +TY SL+EG+
Sbjct: 622 STYFSLIEGI 631



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/539 (22%), Positives = 224/539 (41%), Gaps = 66/539 (12%)

Query: 40  QLGLRDSLSPSLVARVINPYLLTHH---SLALGFFNW-----------------ASQQPN 79
           Q  L   L+P+L   +I+  LL+ H    LAL F                     S+ P 
Sbjct: 69  QWHLIKHLAPNLSPSLISATLLSLHKKSDLALQFVTHIGFKGLDIKTKCLAVAVVSRSP- 127

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITL---DSSVYRFIIPSLIQGKNTQ 136
              SP S   +LK  ++  ++  +  V  ++ + +  L    S V+  +I +  + K   
Sbjct: 128 ---SPKSTLHLLKQ-TIESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGD 183

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF  F+ +K        E  N++L++       +    ++ EM    ++ +   F + I
Sbjct: 184 DAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMI 243

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
              C+  KL +     D +   EN  +  +V+    +IHG+C   RVE A  VLD ++ R
Sbjct: 244 NVLCKEGKLKKAK---DFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNR 300

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             +PD   Y  +       G + E   +L+K +++G+ P    Y   I G       C  
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY------CNK 354

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +L +                            A  + + M+ +  +PT+ST + L   L
Sbjct: 355 GDLVK----------------------------AFGYRDEMVRRAILPTVSTYNLLIHAL 386

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
               K DE   + K +  +    D  +YN++++  C  G  ++A+ +  EM  KG+ P +
Sbjct: 387 FLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTL 446

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y SL+    + + ++ A  L++++   G S +L  +N LI      G ++ A  L   
Sbjct: 447 VTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKE 506

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           M ++ + PD  TY +L++G C+E  ++ A E+  +     +       +T +    +RG
Sbjct: 507 MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRG 565



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 169/408 (41%), Gaps = 49/408 (12%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A + FD M  +GV      F   +  F +  +   V  +  E+ + +   I  +V   
Sbjct: 183 DDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLK---IKSTVYTF 239

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+  CK  ++++A   +  +     KP+ + Y  V   +   G V    +VL   + 
Sbjct: 240 NIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKN 299

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
            GV P +  Y   I G+      C+  +L E   SG                        
Sbjct: 300 RGVEPDSYTYGSLISGM------CKGGKLEEA--SG------------------------ 327

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV---LSANDYFTDMESYNVM 406
                 M E G +PT  T + L    C  NK D LV+ +     +        + +YN++
Sbjct: 328 --ILEKMKEIGLLPTAVTYNTLIDGYC--NKGD-LVKAFGYRDEMVRRAILPTVSTYNLL 382

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  L   G++ EA G+I++M   G+ PD   YN L+   CR    + A  L D+M + G 
Sbjct: 383 IHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGI 442

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              L TY  LI   S+   ++ A  LF  ++ +G +PD   + +L++G C   NL  AF 
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +  +    +++      +T M   CR G    A +LL     RG+  D
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPD 550



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 145/340 (42%), Gaps = 1/340 (0%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           S++  ++I   C+ KR ++AF+  D ++ +   P    +  +   F  +       V+  
Sbjct: 166 SIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYA 225

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
           +  +L +      +   I  L  E ++ +AK+    + +     +    N +I G  S  
Sbjct: 226 EMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRG 285

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
               A +  + M  +G  P   T  +L   +CK  K +E   + + +          +YN
Sbjct: 286 RVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYN 345

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++   C  G L +A+G   EM R+ + P VS YN L+ A   E  +  A  +   M  S
Sbjct: 346 TLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDS 405

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +  TYNILI+ +   G  + A  L   M+ KG+ P   TYTSL+  L +   ++AA
Sbjct: 406 GIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAA 465

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            ++F K +         + +  +   C  G+   A  LL+
Sbjct: 466 DDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLK 505



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAIDSV 106
           P  +T+++L  G+ N       F +           +  +Y+ ++ +L L  +++  D +
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGM 398

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVL 164
           +K +  + I  DS  Y  +I    +  N +KAF++ +E+    + I P +    SL+ VL
Sbjct: 399 IKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI--SKGIQPTLVTYTSLIYVL 456

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           +    +  A  +F+++   G     I F   I   C N  L +  ++L E+ KR  +++ 
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKR--NIVP 514

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    ++ G C+  +VEEA ++L E++ R  +PD I+Y  +   +   G + +   + 
Sbjct: 515 DEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIR 574

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            +   +G  P    Y   I GL   ++   A+EL + +VS   T DD    +LI  +  +
Sbjct: 575 DEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKV 634

Query: 345 DPRS 348
           D  S
Sbjct: 635 DDSS 638


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 3/374 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL VL   G +    K+ D++  RGV  +   +  FI   C+  +L   + M+   R 
Sbjct: 220 NKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVG--RL 277

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +       V    +I+G CK  + +EA   L +L     +PD   Y  +   +   G V
Sbjct: 278 IDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMV 337

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              E +L      G  P    YR  I GL  E     A  L    +      +  + N L
Sbjct: 338 QLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTL 397

Query: 338 IGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I  +S+      A    + M EKG +P + T + L   LCK     +   + KV+ +  Y
Sbjct: 398 IKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGY 457

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F D+ ++N+++    T  ++  A  ++  M   G+DPDV  YNSL+   C+        +
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVME 517

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            +  M   GC+ NL T+NIL+       +++ AL L   M  K V PDA T+ +L++G C
Sbjct: 518 TYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFC 577

Query: 517 QETNLQAAFEVFNK 530
           +  +L  A+ +F K
Sbjct: 578 KNGDLDGAYTLFRK 591



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 142/614 (23%), Positives = 254/614 (41%), Gaps = 64/614 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-LDSSVYRFI 125
           AL  FN   ++  F H+  +Y SI++ L L  +  A++ VL  ++ N    +   VY   
Sbjct: 23  ALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGA 82

Query: 126 IPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSH 182
           + +  +    Q+A +VF  + F +CE   P +   N+++++L   GY D A K++  M  
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCE---PTVFSYNAIMSILVDSGYFDQAHKVYMRMRD 139

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR-----------------------KRE 219
           RG+      F + +  FC  ++    L +L+ +                        K E
Sbjct: 140 RGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDE 199

Query: 220 NSMINGSVIAVLI----------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
              + G ++A  +          +H  CK   V+E  K+LD++  R   P+   Y    +
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQ 259

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSG--- 325
                G +     ++ +    G  P    Y   I GL    +  EA+  LG+++  G   
Sbjct: 260 GLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEP 319

Query: 326 -KFTIDDDVLNALIGSVSSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
             FT +  +     G +  +  R  +   FN     G VP   T  +L   LC   +++ 
Sbjct: 320 DSFTYNTLIAGYCKGGMVQLAERILVNAVFN-----GFVPDEFTYRSLIDGLCHEGETNR 374

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + ++          ++  YN ++  L   G + EA  +  EM  KGL P+V  +N L+ 
Sbjct: 375 ALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVN 434

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+   +  A  L   M + G   ++ T+NILI  +S   ++E AL +   M++ GV P
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDP 494

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  TY SLL GLC+ +  +   E +   V           +  + SLCR      A  LL
Sbjct: 495 DVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLL 554

Query: 564 RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623
             + +   + D+  +   +L D       +       + + T+ +++      S S+ +Y
Sbjct: 555 EEMKNKSVNPDA--VTFGTLIDGFCKNGDL-------DGAYTLFRKMEEVYMVSCSTPTY 605

Query: 624 PEPILLLLHALQEK 637
                +++HA  EK
Sbjct: 606 N----IIIHAFTEK 615



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 214/478 (44%), Gaps = 24/478 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++ +L  L     +   + +L +V    +  +   Y F I  L Q      A  +   +
Sbjct: 218 TFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRL 277

Query: 146 KFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
                D GP+      N L+  L  +     A     ++ + G+E  +  +   I  +C+
Sbjct: 278 I----DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCK 333

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIREC 257
               G ++ + +  R   N++ NG V        +I G C       A  + +E   +  
Sbjct: 334 ----GGMVQLAE--RILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP+ I Y  + +     G + E   +  +  + G+ P    +   + GL     + +A  
Sbjct: 388 KPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           L +V++S  +  D    N LI G  + +   +A+   + M++ G  P + T ++L   LC
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLC 507

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K +K ++++E YK +       ++ ++N+++  LC   +L +A G+++EMK K ++PD  
Sbjct: 508 KTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAV 567

Query: 437 FYNSLMEACCREDLLRPAKKLWDQM---FASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
            + +L++  C+   L  A  L+ +M   +   CS    TYNI+I  F+E   +  A +LF
Sbjct: 568 TFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCS--TPTYNIIIHAFTEKLNVTMAEKLF 625

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
             M+++ + PD  TY  +++G C+  N+   ++   + + +  + + + L   +  LC
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLC 683


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 198/446 (44%), Gaps = 49/446 (10%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC------EDIG--PEIC--NSLLAVLAS 166
           L+S VYR  IP +I   +  + F    + K         E  G  P++   N L++    
Sbjct: 137 LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCK 196

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G IDNAL++ D M+   V    + +   +   C++ KL Q + +LD  R+ +       
Sbjct: 197 SGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLD--RQLQKECYPDV 251

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           +   ++I   CK   V +A K+LDE+R +  KPD + Y ++       G + E    L  
Sbjct: 252 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 311

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
               G  P        I   I+ R +C          +G++   + +L+           
Sbjct: 312 MPSYGCQP------NVITHNIILRSMCS---------TGRWMDAEKLLSD---------- 346

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                    M+ KG  P++ T + L   LC++      +++ + +  +    +  SYN +
Sbjct: 347 ---------MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL 397

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C   ++  A   +  M  +G  PD+  YN+L+ A C++  +  A ++ +Q+ + GC
Sbjct: 398 LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC 457

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S  L TYN +I   S+VG+ E A++L   M  KG+ PD  TY+SL+ GL +E  +  A +
Sbjct: 458 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIK 517

Query: 527 VFNKSVNHDVMLARSILSTFMISLCR 552
            F+      +       ++ M+ LC+
Sbjct: 518 FFHDLEGLGIRPNAITYNSIMLGLCK 543



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 185/416 (44%), Gaps = 10/416 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +      A  V + +     ++ P++   N++L  L   G +  A++
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLKQAME 237

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D    +      I + + I   C+ + +GQ + +LDE+R + +      V   ++I+G
Sbjct: 238 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK--PDVVTYNVLING 295

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+ +    C+P+ I + I+       G   + E +L    + G +P 
Sbjct: 296 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 355

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +  +  A ++ E +     T +    N L+ G         AI + +
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + L   LCK  K D  VE+   LS+      + +YN ++  L   G
Sbjct: 416 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVG 475

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +   A  ++ EM+RKGL PD+  Y+SL+    RE  +  A K +  +   G   N  TYN
Sbjct: 476 KTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYN 535

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            ++    +  + + A+     M+ K   P   TYT L+EG+  E   + A ++ N+
Sbjct: 536 SIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNE 591



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 150/331 (45%), Gaps = 10/331 (3%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +E+ FK L+ +  R   PD I    +   F  +G   +   V++   + G  P    Y  
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 189

Query: 302 FILGLIVERRICEAKELGEVI-VSGKFTIDDDVL--NALIGSV-SSIDPRSAIVFFNFMI 357
            I G       C++ E+   + V  +  +  DV+  N ++ ++  S   + A+   +  +
Sbjct: 190 LISGY------CKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +K   P + T + L +  CK +   + +++   +       D+ +YNV+++ +C  GRL 
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA   +  M   G  P+V  +N ++ + C       A+KL   M   GCS ++ T+NILI
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +     G +  A+ +   M   G  P++ +Y  LL G C+E  +  A E  +  V+    
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 423

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                 +T + +LC+ G   VA ++L  LSS
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQLSS 454



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L  +G L + +  ++ M  +G  PD+    SL+   CR    + A  + + +  SG   +
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TYN+LIS + + GEI+ AL++   M    VAPD  TY ++L  LC    L+ A EV +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           + +  +        +  + + C+      A KLL  + +     D  ++ +L+  +    
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 588 EVEMAIEHI 596
            ++ AI+ +
Sbjct: 301 RLDEAIKFL 309



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 14/240 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           LR   SPS+V   I    L    L     +   + P    +P  LSY+ +L      +++
Sbjct: 348 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 407

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L  +       D   Y  ++ +L +      A  + N+   + +   P +   N
Sbjct: 408 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ--LSSKGCSPVLITYN 465

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  L+  G  + A+K+ DEM  +G++   I +   +       K+ + +    ++   
Sbjct: 466 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 525

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N++   S     I+ G CK ++ + A   L  +  + CKP    Y I+ E     G
Sbjct: 526 GIRPNAITYNS-----IMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 580


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 205/454 (45%), Gaps = 14/454 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +S++SIL  L   R+++   S+ + +K +    +SS Y  II  L  G   ++A+ + 
Sbjct: 219 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRIL 277

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E++     + P +   N ++  L     ++ A K+F+  S RG     + +   I    
Sbjct: 278 DEMEH--ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 335

Query: 201 ENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +  ++ +   + +   +     N ++  S+I    IHG     R E+  KV  EL  R C
Sbjct: 336 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG-----RKEDGHKVFKELIRRGC 390

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KPD        +     G V +  ++ +  R  G  P    Y   I GL    +  E   
Sbjct: 391 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSN 450

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           +   +    F +D    NA++ G   S     A      M EK   PT++T   +   L 
Sbjct: 451 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 510

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++EM +KGL P+V 
Sbjct: 511 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 570

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +NSL++A  + + +  A   +  M    C  N  TY+ILI+    V +   A   + +M
Sbjct: 571 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 630

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            ++G+ P+  TYT+++ GL +  N+  A+ +F +
Sbjct: 631 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFER 664



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 216/491 (43%), Gaps = 11/491 (2%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF+    Q       +SY S++  L  + ++   + +  Q++  +    +  Y  +
Sbjct: 133 MACKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 191

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I         + A+ +   ++       P +   NS+L  L     +D AL +F+ M  +
Sbjct: 192 IMGYGSAGRFEDAYKLLERLRE--RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-K 248

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
             E ++  + + I   C   ++ +   +LDE+   E++ +  +++ V +++   CK +++
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM---EHASLFPNLLTVNIMVDRLCKARKL 305

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           EEA+K+ +    R C PD + Y  + +     G V E   + +K    G       Y   
Sbjct: 306 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSL 365

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGR 361
           I    +  R  +  ++ + ++      D  +LN  +  V  + +     + F  +   G 
Sbjct: 366 IRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 425

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P + + S L   L K  ++ E   ++  +    +  D  +YN +V   C SG++ +AY 
Sbjct: 426 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 485

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++EMK K + P V+ Y ++++   + D L  A  L+++  + G   N+  Y+ LI  F 
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 545

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +VG I+ A  +   M++KG+ P+  T+ SLL+ L +   +  A   F             
Sbjct: 546 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 605

Query: 542 ILSTFMISLCR 552
             S  +  LCR
Sbjct: 606 TYSILINGLCR 616



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/500 (20%), Positives = 224/500 (44%), Gaps = 28/500 (5%)

Query: 42  GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           GL +     L A ++    L    LA+        +P F+    +Y  ++ +L+ +R+  
Sbjct: 7   GLPNQACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFS----AYTVLIGALAEARRPE 62

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
               +L+Q++     +   ++  ++ +L +      A ++ +EVK +C +    + N  +
Sbjct: 63  RALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCI 122

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
                 G +D A K F E+  +G++   + +   IW  C+  +LG+   +  ++ + E S
Sbjct: 123 DCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM-EAERS 181

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY----------RIVAEEF 271
           +        +I+ G+    R E+A+K+L+ LR R C P  +++          R V E  
Sbjct: 182 VPCAYAYNTMIM-GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 240

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
               S+FE   V+KK  +    P ++ Y   I  L +  R+ EA  + + +       + 
Sbjct: 241 ----SLFE---VMKKDAE----PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNL 289

Query: 332 DVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             +N ++  +        A   F    ++G  P   T  +L   L K+ + DE   +++ 
Sbjct: 290 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 349

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    +  +   Y  ++      GR  + + V +E+ R+G  PD++  N+ M+   +   
Sbjct: 350 MLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGE 409

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +   + +++ + + G   ++++Y+ILI   ++ G+      +FH M ++G A DA  Y +
Sbjct: 410 VEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNA 469

Query: 511 LLEGLCQETNLQAAFEVFNK 530
           +++G C+   +  A+E+  +
Sbjct: 470 VVDGFCKSGKVHKAYEILEE 489



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 180/402 (44%), Gaps = 4/402 (0%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           + C  L A L     +D+A+     M       +   + V I    E  +  + L +L +
Sbjct: 11  QACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQ 70

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           ++  E     G  +   ++    +  +V +A  ++DE++    +PD + Y +  + F   
Sbjct: 71  MQ--EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKA 128

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G+V        + +  G+ P    Y   I  L    R+ EA+EL   + + +        
Sbjct: 129 GNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 188

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N +I G  S+     A      + E+G +P++ + +++   L K+ K DE + +++V+  
Sbjct: 189 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK- 247

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
            D   +  +YN+++  LC  GR+ EAY ++ EM+   L P++   N +++  C+   L  
Sbjct: 248 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 307

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A K+++     GC+ +  TY  LI    + G+++ A RLF  ML+ G   +   YTSL+ 
Sbjct: 308 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
                   +   +VF + +        ++L+T+M  + + G 
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGE 409



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/244 (16%), Positives = 104/244 (42%), Gaps = 2/244 (0%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A +Q  F     +Y++++     S +++    +L+++K   +    + Y  I+  L +  
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A+ +F E K    ++   + +SL+      G ID A  + +EM  +G+  +   + 
Sbjct: 514 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 573

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +    +  ++ + L     +  +E      +    ++I+G C+ ++  +AF    +++
Sbjct: 574 SLLDALVKAEEINEALVCFQSM--KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 631

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +   P+ + Y  +      +G++ +   + ++ +  G  P    +   I G+    R  
Sbjct: 632 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAM 691

Query: 314 EAKE 317
           EA +
Sbjct: 692 EAYQ 695


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 216/480 (45%), Gaps = 26/480 (5%)

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           N  DI P  C +L+      G    A K+ + +   G     I + V I  +C+  ++  
Sbjct: 133 NVPDIIP--CTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINN 190

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            LS+LD +     S+    V    I+   C   ++++A +VLD +  R+C PD I Y I+
Sbjct: 191 ALSVLDRM-----SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTIL 245

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSG- 325
            E       V +   +L + R  G  P    Y   + G+  E R+ EA K L ++  SG 
Sbjct: 246 IEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305

Query: 326 --KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                  + +L ++  +   +D   A      M+ KG  P++ T + L   LC++     
Sbjct: 306 QPNVITHNIILRSMCSTGRWMD---AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++ + +  +    +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+++ 
Sbjct: 363 AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C++  +  A ++ +Q+ + GCS  L TYN +I   ++ G+   A++L   M  K + P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  TY+SL+ GL +E  +  A + F++     V       ++ M+ LC+      A   L
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFL 542

Query: 564 -----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE-SSPTMLQEISAELFAS 617
                RG         S+ IL++ LA      MA E ++ + E  +  +++  SAE  A 
Sbjct: 543 VYMINRGCKPT---ETSYTILIEGLAYE---GMAKEALELLNELCNKGLMKRSSAEQVAG 596



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 189/423 (44%), Gaps = 10/423 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +      A SV + +      + P++   N++L  L   G +  A++
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D M  R      I + + I   C ++ +GQ + +LDE+R R        V   ++++G
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDR--GCTPDVVTYNVLVNG 283

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+++    C+P+ I + I+       G   + E +L    + G +P 
Sbjct: 284 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 343

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +  +  A ++ E +       +    N L+ G         AI +  
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + +   LCK  K ++ VE+   LS+      + +YN ++  L  +G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A  ++ EM+ K L PD   Y+SL+    RE  +  A K + +    G   N  T+N
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFN 523

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            ++    +  + + A+     M+ +G  P  T+YT L+EGL  E   + A E+ N+  N 
Sbjct: 524 SIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNK 583

Query: 535 DVM 537
            +M
Sbjct: 584 GLM 586



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 165/350 (47%), Gaps = 8/350 (2%)

Query: 219 ENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           EN + +G+V  ++    +I GFC+  +  +A K+L+ L      PD I Y ++   +   
Sbjct: 126 ENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKA 185

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +     VL +   + V+P    Y   +  L    ++ +A E+ + ++      D    
Sbjct: 186 GEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             LI  +        A+   + M ++G  P + T + L   +CK  + DE ++    + +
Sbjct: 243 TILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    ++ ++N+++  +C++GR  +A  ++ +M RKG  P V  +N L+   CR+ LL  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + ++M   GC  N  +YN L+  F +  +++ A+     M+ +G  PD  TY ++L 
Sbjct: 363 AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            LC++  ++ A E+ N+  +          +T +  L + G    A KLL
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 10/331 (3%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EE FK L+ +      PD I    +   F  MG   +   +L+     G  P    Y  
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNV 177

Query: 302 FILGLIVERRICEAKELGEVI-VSGKFTIDDDVL--NALIGSV-SSIDPRSAIVFFNFMI 357
            I G       C+A E+   + V  + ++  DV+  N ++ S+  S   + A+   + M+
Sbjct: 178 MISGY------CKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++   P + T + L +  C+ +   + +++   +       D+ +YNV+V+ +C  GRL 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA   + +M   G  P+V  +N ++ + C       A+KL   M   G S ++ T+NILI
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +     G +  A+ +   M + G  P++ +Y  LL G C+E  +  A E   + V+    
Sbjct: 352 NFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                 +T + +LC+ G    A ++L  LSS
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 392 SANDYFT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           SAN  F   D+ES N +   L  +G L E +  ++ M   G  PD+    +L+   CR  
Sbjct: 93  SANSSFVLEDVESNNHLRQ-LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMG 151

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
             R A K+ + +  SG   ++ TYN++IS + + GEI  AL +   M    V+PD  TY 
Sbjct: 152 KTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYN 208

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----R 564
           ++L  LC    L+ A EV ++ +  D        +  + + CR      A KLL     R
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDR 268

Query: 565 GLSSDL 570
           G + D+
Sbjct: 269 GCTPDV 274



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 14/244 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           LR   SPS+V   I    L    L     +   + P     P  LSY+ +L      +++
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L+++       D   Y  ++ +L +    + A  + N+   + +   P +   N
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ--LSSKGCSPVLITYN 453

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  LA  G    A+K+ DEM  + ++  TI +   +       K+ + +    E  + 
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N++   S     I+ G CK ++ + A   L  +  R CKP   +Y I+ E     G
Sbjct: 514 GVRPNAVTFNS-----IMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEG 568

Query: 276 SVFE 279
              E
Sbjct: 569 MAKE 572


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 198/446 (44%), Gaps = 49/446 (10%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC------EDIG--PEIC--NSLLAVLAS 166
           L+S VYR  IP +I   +  + F    + K         E  G  P++   N L++    
Sbjct: 80  LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCK 139

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G IDNAL++ D M+   V    + +   +   C++ KL Q + +LD  R+ +       
Sbjct: 140 SGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLD--RQLQKECYPDV 194

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           +   ++I   CK   V +A K+LDE+R +  KPD + Y ++       G + E    L  
Sbjct: 195 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 254

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
               G  P        I   I+ R +C          +G++   + +L+           
Sbjct: 255 MPSYGCQP------NVITHNIILRSMCS---------TGRWMDAEKLLSD---------- 289

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                    M+ KG  P++ T + L   LC++      +++ + +  +    +  SYN +
Sbjct: 290 ---------MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL 340

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C   ++  A   +  M  +G  PD+  YN+L+ A C++  +  A ++ +Q+ + GC
Sbjct: 341 LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC 400

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S  L TYN +I   S+VG+ E A++L   M  KG+ PD  TY+SL+ GL +E  +  A +
Sbjct: 401 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIK 460

Query: 527 VFNKSVNHDVMLARSILSTFMISLCR 552
            F+      +       ++ M+ LC+
Sbjct: 461 FFHDLEGLGIRPNAITYNSIMLGLCK 486



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 185/416 (44%), Gaps = 10/416 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +      A  V + +     ++ P++   N++L  L   G +  A++
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLKQAME 180

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D    +      I + + I   C+ + +GQ + +LDE+R + +      V   ++I+G
Sbjct: 181 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK--PDVVTYNVLING 238

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+ +    C+P+ I + I+       G   + E +L    + G +P 
Sbjct: 239 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 298

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +  +  A ++ E +     T +    N L+ G         AI + +
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + L   LCK  K D  VE+   LS+      + +YN ++  L   G
Sbjct: 359 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVG 418

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +   A  ++ EM+RKGL PD+  Y+SL+    RE  +  A K +  +   G   N  TYN
Sbjct: 419 KTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYN 478

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            ++    +  + + A+     M+ K   P   TYT L+EG+  E   + A ++ N+
Sbjct: 479 SIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNE 534



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 145/337 (43%), Gaps = 37/337 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I GFC+  + ++A  V++ L      PD I Y ++   +   G +     VL +   + 
Sbjct: 98  LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDR---MN 154

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           VAP    Y   +      R +C+         SGK                    + A+ 
Sbjct: 155 VAPDVVTYNTIL------RTLCD---------SGKL-------------------KQAME 180

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
             +  ++K   P + T + L +  CK +   + +++   +       D+ +YNV+++ +C
Sbjct: 181 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 240

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             GRL EA   +  M   G  P+V  +N ++ + C       A+KL   M   GCS ++ 
Sbjct: 241 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 300

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T+NILI+     G +  A+ +   M   G  P++ +Y  LL G C+E  +  A E  +  
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           V+          +T + +LC+ G   VA ++L  LSS
Sbjct: 361 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSS 397



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L  +G L + +  ++ M  +G  PD+    SL+   CR    + A  + + +  SG   +
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TYN+LIS + + GEI+ AL++   M    VAPD  TY ++L  LC    L+ A EV +
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           + +  +        +  + + C+      A KLL  + +     D  ++ +L+  +    
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 588 EVEMAIEHI 596
            ++ AI+ +
Sbjct: 244 RLDEAIKFL 252



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 14/240 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           LR   SPS+V   I    L    L     +   + P    +P  LSY+ +L      +++
Sbjct: 291 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 350

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L  +       D   Y  ++ +L +      A  + N+   + +   P +   N
Sbjct: 351 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ--LSSKGCSPVLITYN 408

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  L+  G  + A+K+ DEM  +G++   I +   +       K+ + +    ++   
Sbjct: 409 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 468

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N++   S     I+ G CK ++ + A   L  +  + CKP    Y I+ E     G
Sbjct: 469 GIRPNAITYNS-----IMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 523


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 179/406 (44%), Gaps = 47/406 (11%)

Query: 130 IQGKNTQKAFSVFNEVKFNCE----DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           ++G+ T+    +   VK+ CE      GP     +L  +   G    AL +F +M  R +
Sbjct: 186 LKGRVTEALVLIDRMVKYGCEANEITYGP-----VLNRMCKSGNTALALDLFRKMEERSI 240

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEE 244
           + S + + + I   C++  L   LS+ +E+   E   I   V+A   II G C   R ++
Sbjct: 241 KASVVQYSIVIDSLCKDGNLDDALSLFNEM---EMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
             K+L E+  R   P+ + +  + + F   G + E + +  +    G+AP T  Y   I 
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G   E R+ EA ++                                   + M+ KG  P 
Sbjct: 358 GFCKENRLGEANQM----------------------------------LDLMVSKGCEPN 383

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + T S L  + CK  + D  + ++  +S+     D  +YN +V   C SG+L  A  + Q
Sbjct: 384 IVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQ 443

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM  +G+ P V  Y  L++  C    L+ A +++++M  S     +  YNI+I       
Sbjct: 444 EMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNAS 503

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +++ A  LF ++  KGV PD  TY  ++ GLC++ +L  A  +F K
Sbjct: 504 KVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRK 549



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 180/409 (44%), Gaps = 25/409 (6%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           L + +A     D  L    EM   G+E +     + I  FC   KL    S++    K  
Sbjct: 75  LFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFG 134

Query: 219 -ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E + I  S +    I+GFC   RV EA  ++D +   + +P+ +    +     L G V
Sbjct: 135 FEPNTITFSTL----INGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRV 190

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFI----------LGLIVERRICEAKELGEVIVSGKF 327
            E  V++ +  K G       Y   +          L L + R++ E + +   +V    
Sbjct: 191 TEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKM-EERSIKASVVQYSI 249

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            ID       +    ++D   A+  FN M  KG    +   S++   LC   + D+  ++
Sbjct: 250 VIDS------LCKDGNLD--DALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKM 301

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            + +   +   ++ +++ ++      G+L EA  +  EM  +G+ PD   Y+SL++  C+
Sbjct: 302 LREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCK 361

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E+ L  A ++ D M + GC  N+ TY+ILI+ + +   ++  +RLF  +  KG+  D  T
Sbjct: 362 ENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVT 421

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           Y +L++G CQ   L  A E+F + V+  V  +       +  LC  G  
Sbjct: 422 YNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 11/373 (2%)

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGK 240
           G E +TI F   I  FC   ++ + ++++D   E++ R N      V    +I+G C   
Sbjct: 134 GFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNV-----VTVNTLINGLCLKG 188

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           RV EA  ++D +    C+ + I Y  V       G+      + +K  +  +      Y 
Sbjct: 189 RVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYS 248

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIE 358
             I  L  +  + +A  L   +       D    +++IG + + D R          MI 
Sbjct: 249 IVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCN-DGRWDDGAKMLREMIG 307

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +  +P + T S L     K  K  E  E+Y  + A     D  +Y+ ++   C   RL E
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGE 367

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++  M  KG +P++  Y+ L+ + C+   +    +L+ ++ + G   +  TYN L+ 
Sbjct: 368 ANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQ 427

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F + G++  A  LF  M+ +GV P   TY  LL+GLC    LQ A E+F K     ++L
Sbjct: 428 GFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMIL 487

Query: 539 ARSILSTFMISLC 551
              I +  +  +C
Sbjct: 488 GIGIYNIIIHGMC 500



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 28/258 (10%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID-S 105
           L   +VAR I P  +T+ SL  GF                     K   L      +D  
Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGF--------------------CKENRLGEANQMLDLM 375

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           V K  + N +T     Y  +I S  + K       +F E+            N+L+    
Sbjct: 376 VSKGCEPNIVT-----YSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFC 430

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
             G ++ A ++F EM  RGV  S + +G+ +   C+N +L + L + ++++K  + MI G
Sbjct: 431 QSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQK--SRMILG 488

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
             I  +IIHG C   +V++A+ +   L ++  KPD + Y ++       GS+ E +++ +
Sbjct: 489 IGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFR 548

Query: 286 KKRKLGVAPRTNDYREFI 303
           K ++ G AP    Y   I
Sbjct: 549 KMKEDGCAPSDCTYNILI 566



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 43/264 (16%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    AI  F  MI+   +P+L   S L   + +R + D ++   K +  N    +
Sbjct: 44  GIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHN 103

Query: 400 MESYNVMVSFLCTS-----------------------------------GRLREAYGVIQ 424
           M + N+M++  C                                     GR+ EA  ++ 
Sbjct: 104 MYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVD 163

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            M      P+V   N+L+   C +  +  A  L D+M   GC  N  TY  ++++  + G
Sbjct: 164 RMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSG 223

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLAR 540
               AL LF  M E+ +      Y+ +++ LC++ NL  A  +FN    K +  DV+   
Sbjct: 224 NTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYS 283

Query: 541 SILSTFMISLCRRGHFLVATKLLR 564
           SI+      LC  G +    K+LR
Sbjct: 284 SIIG----GLCNDGRWDDGAKMLR 303


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 209/497 (42%), Gaps = 54/497 (10%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR-- 123
           L L FF W+ ++   ++   +   +L  L+ S++ + + S L ++  N+    SSV+   
Sbjct: 60  LVLRFFQWSQKEFRISYGLETTGKVLHLLANSKKYSKVRSFLDKLVKNEKHTVSSVFHSL 119

Query: 124 ---------------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
                           ++ + +       A  VF  V+     +    CN LL+ L    
Sbjct: 120 LLGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGN 179

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK--------REN 220
                  ++ EM  R ++ +   F +FI   C+  KL +   ++++++           N
Sbjct: 180 ETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYN 239

Query: 221 SMINGS-----------VIAVL-----------------IIHGFCKGKRVEEAFKVLDEL 252
           ++I+G              A+L                 +I GFCK + V  A    +E+
Sbjct: 240 TLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEM 299

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           + +  KP+ + Y  +       G + E   +  K   LG+ P    +   I G   ++ I
Sbjct: 300 QRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMI 359

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA++L + I       +    N +I +              N M+++G  P +ST + L
Sbjct: 360 KEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCL 419

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LC+        ++   +   +   D+ +YN+++   C  G   +A  ++ EM   G+
Sbjct: 420 IAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGV 479

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+   YN+LM+  C E  L+ A K+  QM   G   N+ TYN+LI  F + G++E A R
Sbjct: 480 KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANR 539

Query: 492 LFHNMLEKGVAPDATTY 508
           L + MLEKG+ P+ TTY
Sbjct: 540 LLNEMLEKGLNPNRTTY 556



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 3/207 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVE---VYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           G  P + T + L    CK+  + ++     + K + AN    +  ++N ++   C    +
Sbjct: 230 GFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENV 289

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A    +EM+R+GL P++  YNSL+        L  A  LWD+M   G   N+ T+N L
Sbjct: 290 LAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNAL 349

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+ F +   I+ A +LF ++ E+ + P+A T+ ++++  C+   ++  F + N  ++  +
Sbjct: 350 INGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGI 409

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL 563
               S  +  +  LCR  +   A KLL
Sbjct: 410 FPNVSTYNCLIAGLCRNQNVRAAKKLL 436


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 198/478 (41%), Gaps = 40/478 (8%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H P  + +  IL SL   +    + S+ KQ++   I  D      +I           +F
Sbjct: 6   HIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSF 65

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++          I N+L+  L   G +  +L   D++  +G +   + +G+ +   
Sbjct: 66  SVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C   K+G+    +  +R  E+      V+    II G CK K V+EA+ +  E+  R   
Sbjct: 126 C---KIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF 182

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD I Y  +   F L G + E   +L +     + P    Y   I  L  E ++ E+K L
Sbjct: 183 PDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNL 242

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             V                                  M +KG  P +   S L    C  
Sbjct: 243 LAV----------------------------------MTKKGVKPDVVIYSILMDGYCLV 268

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +  +  +++ V+       D+ SYN++++ LC   R+ EA  +++EM  K + PD   Y
Sbjct: 269 GEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTY 328

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           +SL++  C+   +     L  +M   G   NL TYN L+    +   ++ A+ LF  M E
Sbjct: 329 SSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKE 388

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +G+ P+  TYT+L++GLC+   L+    +F   +     +     +  +  LC+ G F
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMF 446



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 172/368 (46%), Gaps = 9/368 (2%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K K       +  ++  +   PD +   I+   F  +G +     VL K  KLG
Sbjct: 16  ILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      + GL ++  + ++    + +V+  F +D      L+  +  I + R AI
Sbjct: 76  YQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAI 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                + ++   P +   S +   LCK    DE  ++Y  ++A   F D+ +Y  ++   
Sbjct: 136 KLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGF 195

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C +G+L EA+G++ EM  K ++P++  YN+L++  C+E  ++ +K L   M   G   ++
Sbjct: 196 CLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDV 255

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y+IL+  +  VGE++ A ++F  M++ GV PD  +Y  ++ GLC+   +  A  +  +
Sbjct: 256 VIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLRE 315

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
            ++ +++      S+ +  LC+ G       L      RG  ++L   +S   LL  L  
Sbjct: 316 MLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNS---LLDGLCK 372

Query: 586 AREVEMAI 593
            + ++ AI
Sbjct: 373 NQNLDKAI 380



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 99/203 (48%)

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P +     +  +L K      ++ + K + A     D+ + +++++  C  G++  ++
Sbjct: 6   HIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSF 65

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V+ ++ + G  P+    N+LM+  C +  ++ +    D++ A G   +  +Y IL++  
Sbjct: 66  SVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            ++GE   A++L   + ++   PD   Y+++++GLC++  +  A++++++     +    
Sbjct: 126 CKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDV 185

Query: 541 SILSTFMISLCRRGHFLVATKLL 563
              +T +   C  G  + A  LL
Sbjct: 186 ITYTTLICGFCLAGQLMEAFGLL 208



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 14/188 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ I+  L   ++++   ++L+++    +  D+  Y  +I  L +         +  E+
Sbjct: 292 SYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEM 351

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
               +       NSLL  L  +  +D A+ +F +M  RG++ +   +   I   C+  +L
Sbjct: 352 HHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRL 411

Query: 206 --GQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
             GQ L         ++ ++ G  I V    ++I G CK    +EA  +  ++    C P
Sbjct: 412 KKGQALF--------QHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIP 463

Query: 260 DFIAYRIV 267
           + + + I+
Sbjct: 464 NAVTFEII 471


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 218/480 (45%), Gaps = 14/480 (2%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       D   Y 
Sbjct: 108 LDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYN 167

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEIC--NSLLAVLASDGYIDNALKMF 177
            ++  L     +Q+A  + + +    +D G    P++   N++L     +G  D A   +
Sbjct: 168 NLLKGLCDENRSQEALELLHMMA---DDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM  RG+    + +   I   C+   + + + +L+ + K  N ++   +    I+HG+C
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK--NGVMPDCMTYNSILHGYC 282

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              + +EA   L ++R    +P+ + Y  +       G   E   +     K G+ P   
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 342

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
            YR  + G   +  + E   L +++V      D  V N LI + +  +    A++ F+ M
Sbjct: 343 TYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P +     +   LCK    D+ +  ++ +       ++  Y  ++  LCT  + 
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  +I EM  +G+  +  F+NS++++ C+E  +  ++KL+D M   G   ++ TYN L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I      G+++ A +L  +M+  GV PD  TY +L+ G C+ + +  A  +F + V+  V
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 173/412 (41%), Gaps = 13/412 (3%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+      G +D        +  +G     I F   +   C + +    +   D V +R 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM---DIVLRRM 154

Query: 220 NSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDEL---RIRECKPDFIAYRIVAEEFK 272
             +  G +  V     ++ G C   R +EA ++L  +   R     PD ++Y  V   F 
Sbjct: 155 TEL--GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G   +      +    G+ P    Y   I  L   + + +A E+   +V      D  
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N+++ G  SS  P+ AI     M   G  P + T S+L   LCK  +S E  +++  +
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           +      D+ +Y  ++    T G L E + ++  M R G+ PD   +N L+ A  +++ +
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  ++ +M   G + N+  Y  +I    + G ++ A+  F  M+++G+ P+   YTSL
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 452

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + GLC       A E+  + ++  + L     ++ + S C+ G  + + KL 
Sbjct: 453 IHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 118/606 (19%), Positives = 245/606 (40%), Gaps = 77/606 (12%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFT--HSPL---------SYHSILKSLSLSRQINAIDSV 106
           P +++++++  GFF        ++  H  L         +Y SI+ +L  ++ ++    V
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L  +  N +  D   Y  I+         ++A       K   + + P +   +SL+  L
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLK--KMRSDGVEPNVVTYSSLMNYL 316

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G    A K+FD M+ RG+E     +   +  +     L ++ ++LD +  R     +
Sbjct: 317 CKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD-LMVRNGIQPD 375

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V  +LI   + K ++V++A  V  ++R     P+ + Y  V +     GSV +  +  
Sbjct: 376 HHVFNILIC-AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF 434

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           ++    G+ P    Y   I GL    +  +A+EL   ++     ++    N++I S    
Sbjct: 435 EQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK- 493

Query: 345 DPRSAIV----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                ++     F+ M+  G  P + T + L    C   K DE  ++   + +     D+
Sbjct: 494 --EGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y  +++  C   R+ +A  + +EM   G+ P++  YN +++          AK+L+  
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML----------------------- 497
           +  SG    L TYNI++    +    + ALR+F N+                        
Sbjct: 612 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 498 ------------EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
                         G+ PD  TY+ + E L ++ +L+   ++F     +       +L++
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNS 731

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
            +  L +RG              D+  + +++ ++    D +   +      ++ ESSP 
Sbjct: 732 IVRKLLQRG--------------DITRAGTYLFMI----DEKHFSLEASTASFLLESSPI 773

Query: 606 MLQEIS 611
           + ++IS
Sbjct: 774 VWEQIS 779



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           LN  +  V+   P +A+  +N M   G     PT+ T + L    C+  + D        
Sbjct: 58  LNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGN 117

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYG-VIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +    +  D  ++  ++  LC   R  +A   V++ M   G  PDV  YN+L++  C E+
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177

Query: 450 LLRPAKKLWDQMF---ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             + A +L   M      G   ++ +YN +++ F + G+ + A   +H ML++G+ PD  
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY+S++  LC+   +  A EV N  V + VM      ++ +   C  G    A   L+ +
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 567 SSD 569
            SD
Sbjct: 298 RSD 300



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 356 MIEKGRVPTLSTLSNLSKNLC-KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +++KG      T + L K LC  +  SD +  V + ++      D+ SYN ++  LC   
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177

Query: 415 RLREAYGVIQEM---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           R +EA  ++  M   +  G  PDV  YN+++    +E     A   + +M   G   ++ 
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ +I+   +   ++ A+ + + M++ GV PD  TY S+L G C     + A     K 
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +  V       S+ M  LC+ G    A K+      RGL  D+
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 341


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 191/449 (42%), Gaps = 54/449 (12%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  D AL +   M+  G     + +   I   C+   + +  ++L+E+      ++ G  
Sbjct: 189 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM------LLMGCA 242

Query: 228 IAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             V     ++ G C   RV EA +++D +  + C P  + Y      F L G    R+  
Sbjct: 243 ADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTY-----GFLLQGLCRVRQAD 297

Query: 284 LKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + +  LG  P  N   +   I G + E ++ EA EL E +       D    + L+  +
Sbjct: 298 -EARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGL 356

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             +    SA+     M +KG  P + T + +  + CK    D+   + + +SA     + 
Sbjct: 357 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC-------------- 446
           + YN M+  LC  GR+ EA G+IQEM+ +G +PD+  YN+++   C              
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476

Query: 447 ---------------------REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
                                R+   + A +L  +M   GCS ++ +YN LI    + G 
Sbjct: 477 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 536

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ +L L   M EKG+ P+  +Y  L+  LC+E  ++ A E+  + +N  +       +T
Sbjct: 537 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 596

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            +  LC+ G    A  LL  L ++  H D
Sbjct: 597 LINGLCKMGWMHAALNLLEKLHNENVHPD 625



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/499 (20%), Positives = 209/499 (41%), Gaps = 30/499 (6%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           H+ AL  +     +     +  ++    ++L    + +   ++L+ +  +    D+ +Y+
Sbjct: 155 HADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQ 214

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +I +L       +A ++ NE+            + ++  +   G +  A ++ D M  +
Sbjct: 215 TVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE----NSMINGSVIA---------- 229
           G     + +G  +   C   +  +  +ML  V +      N++I G +            
Sbjct: 275 GCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELY 334

Query: 230 ---------------VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                           +++HG CK  R+  A ++L E+  +   P+ + Y IV   F   
Sbjct: 335 ETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 394

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G   +   +L++    G+   +  Y   I  L  + R+ EA  L + + S     D    
Sbjct: 395 GMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSY 454

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N +I  + + +    A   F  ++E+G V    T + +   L +  +  + V + K +  
Sbjct: 455 NTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMIL 514

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D+ SYN ++  +C  G +  +  +++EM  KG+ P+   YN L+   C+E  +R 
Sbjct: 515 HGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRD 574

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L  QM   G + ++ TYN LI+   ++G +  AL L   +  + V PD  TY  L+ 
Sbjct: 575 ALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILIS 634

Query: 514 GLCQETNLQAAFEVFNKSV 532
             C+   L  A  + N+++
Sbjct: 635 WHCKVRLLDDAAMLLNRAM 653



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 183/403 (45%), Gaps = 20/403 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  +L+ L   RQ +   ++L +V    + L ++V   I   L +GK   +A  ++  
Sbjct: 281 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV---IGGCLAEGK-LAEATELYET 336

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            + L+  L   G I +A+++  EM  +G   + + + + +  FC+N  
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 205 LGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
                ++L+E+  +  ++     NG      +I+  CK  R++EA  ++ E+R + C PD
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNG------MIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             +Y  +         + E E + +   + GV      Y   I  L+ + R  +A  L +
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 510

Query: 321 VIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            ++    ++D    N LI ++    ++D   ++V    M EKG  P   + + L   LCK
Sbjct: 511 EMILHGCSLDVVSYNGLIKAMCKDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +  + +E+ K +       D+ +YN +++ LC  G +  A  +++++  + + PD+  
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 628

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISK 479
           YN L+   C+  LL  A  L ++  A+ C  G+ +   IL  K
Sbjct: 629 YNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDK 671



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 40/256 (15%)

Query: 349 AIVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           A+  +  M+ + RVP T  T    ++ LC+  ++DE + + + ++ +    D   Y  ++
Sbjct: 158 ALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVI 217

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G + EA  ++ EM   G   DV+ ++ ++   C    +R A +L D+M   GC 
Sbjct: 218 HALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCM 277

Query: 468 GNLKTYNILISKFSEV-------------------------------GEIEGALRLFHNM 496
             + TY  L+     V                               G++  A  L+  M
Sbjct: 278 PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETM 337

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCR 552
             KG  PDA TY+ L+ GLC+   + +A     E+  K    +V+    +L +F    C+
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF----CK 393

Query: 553 RGHFLVATKLLRGLSS 568
            G +     LL  +S+
Sbjct: 394 NGMWDDTRALLEEMSA 409



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ V    LC  GR  EA  +++ M R G  PD   Y +++ A C +  +  A  L ++M
Sbjct: 177 TFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 236

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC+ ++ T++ ++     +G +  A RL   M+ KG  P   TY  LL+GLC+    
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A  +  +    +V+L  +++   +      G    AT+L   +       D+H   IL
Sbjct: 297 DEARAMLGRVPELNVVLFNTVIGGCLAE----GKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
           +  L     +  A+  ++ +++
Sbjct: 353 MHGLCKLGRIGSAVRLLREMEK 374


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 191/449 (42%), Gaps = 54/449 (12%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  D AL +   M+  G     + +   I   C+   + +  ++L+E+      ++ G  
Sbjct: 173 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM------LLMGCA 226

Query: 228 IAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             V     ++ G C   RV EA +++D +  + C P  + Y      F L G    R+  
Sbjct: 227 ADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTY-----GFLLQGLCRVRQAD 281

Query: 284 LKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + +  LG  P  N   +   I G + E ++ EA EL E +       D    + L+  +
Sbjct: 282 -EARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGL 340

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             +    SA+     M +KG  P + T + +  + CK    D+   + + +SA     + 
Sbjct: 341 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 400

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC-------------- 446
           + YN M+  LC  GR+ EA G+IQEM+ +G +PD+  YN+++   C              
Sbjct: 401 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 460

Query: 447 ---------------------REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
                                R+   + A +L  +M   GCS ++ +YN LI    + G 
Sbjct: 461 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 520

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ +L L   M EKG+ P+  +Y  L+  LC+E  ++ A E+  + +N  +       +T
Sbjct: 521 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 580

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            +  LC+ G    A  LL  L ++  H D
Sbjct: 581 LINGLCKMGWMHAALNLLEKLHNENVHPD 609



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/458 (21%), Positives = 195/458 (42%), Gaps = 30/458 (6%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           ++L+ +  +    D+ +Y+ +I +L       +A ++ NE+            + ++  +
Sbjct: 180 ALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGM 239

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE----N 220
              G +  A ++ D M  +G     + +G  +   C   +  +  +ML  V +      N
Sbjct: 240 CGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFN 299

Query: 221 SMINGSVIA-------------------------VLIIHGFCKGKRVEEAFKVLDELRIR 255
           ++I G +                            +++HG CK  R+  A ++L E+  +
Sbjct: 300 TVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK 359

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P+ + Y IV   F   G   +   +L++    G+   +  Y   I  L  + R+ EA
Sbjct: 360 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEA 419

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L + + S     D    N +I  + + +    A   F  ++E+G V    T + +   
Sbjct: 420 MGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHA 479

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L +  +  + V + K +  +    D+ SYN ++  +C  G +  +  +++EM  KG+ P+
Sbjct: 480 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 539

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN L+   C+E  +R A +L  QM   G + ++ TYN LI+   ++G +  AL L  
Sbjct: 540 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 599

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            +  + V PD  TY  L+   C+   L  A  + N+++
Sbjct: 600 KLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 637



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 183/403 (45%), Gaps = 20/403 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  +L+ L   RQ +   ++L +V    + L ++V   I   L +GK   +A  ++  
Sbjct: 265 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV---IGGCLAEGK-LAEATELYET 320

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            + L+  L   G I +A+++  EM  +G   + + + + +  FC+N  
Sbjct: 321 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 380

Query: 205 LGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
                ++L+E+  +  ++     NG      +I+  CK  R++EA  ++ E+R + C PD
Sbjct: 381 WDDTRALLEEMSAKGLTLNSQGYNG------MIYALCKDGRMDEAMGLIQEMRSQGCNPD 434

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             +Y  +         + E E + +   + GV      Y   I  L+ + R  +A  L +
Sbjct: 435 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 494

Query: 321 VIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            ++    ++D    N LI ++    ++D   ++V    M EKG  P   + + L   LCK
Sbjct: 495 EMILHGCSLDVVSYNGLIKAMCKDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCK 552

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +  + +E+ K +       D+ +YN +++ LC  G +  A  +++++  + + PD+  
Sbjct: 553 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 612

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISK 479
           YN L+   C+  LL  A  L ++  A+ C  G+ +   IL  K
Sbjct: 613 YNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDK 655



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ V    LC  GR  EA  +++ M R G  PD   Y +++ A C +  +  A  L ++M
Sbjct: 161 TFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 220

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC+ ++ T++ ++     +G +  A RL   M+ KG  P   TY  LL+GLC+    
Sbjct: 221 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 280

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A  +  +    +V+L  +++   +      G    AT+L   +       D+H   IL
Sbjct: 281 DEARAMLGRVPELNVVLFNTVIGGCLAE----GKLAEATELYETMGLKGCQPDAHTYSIL 336

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
           +  L     +  A+  ++ +++
Sbjct: 337 MHGLCKLGRIGSAVRLLREMEK 358



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 41/260 (15%)

Query: 346 PRSA-IVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           PR+     +  M+ + RVP T  T    ++ LC+  ++DE + + + ++ +    D   Y
Sbjct: 138 PRARRFALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLY 197

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++  LC  G + EA  ++ EM   G   DV+ ++ ++   C    +R A +L D+M  
Sbjct: 198 QTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMT 257

Query: 464 SGCSGNLKTYNILISKFSEV-------------------------------GEIEGALRL 492
            GC   + TY  L+     V                               G++  A  L
Sbjct: 258 KGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATEL 317

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMI 548
           +  M  KG  PDA TY+ L+ GLC+   + +A     E+  K    +V+    +L +F  
Sbjct: 318 YETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF-- 375

Query: 549 SLCRRGHFLVATKLLRGLSS 568
             C+ G +     LL  +S+
Sbjct: 376 --CKNGMWDDTRALLEEMSA 393


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 181/411 (44%), Gaps = 25/411 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L + +A     D  L     M   G+E       + I  +C   KL    S+L    K
Sbjct: 103 NRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWK 162

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E   I  S +    ++GFC   RV EA  ++D +   + +PD +    +     L G
Sbjct: 163 LGYEPDTITFSTL----VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 218

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFI----------LGLIVERRICEAKELGEVIVSG 325
            V E  V++ +  + G  P    Y   +          L L + R++ E + +   +V  
Sbjct: 219 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQY 277

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              ID       +    S D   A+  FN M  KG    + T S+L   LC   K D+  
Sbjct: 278 SIVIDS------LCKDGSFD--DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 329

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++ + +   +   D+ +++ ++      G+L EA  +  EM  +G+ PD   YNSL++  
Sbjct: 330 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 389

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+E+ L  A +++D M + GC  ++ TY+ILI+ + +   ++  +RLF  +  KG+ P+ 
Sbjct: 390 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNT 449

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            TY +L+ G CQ   L AA E+F + V+  V  +       +  LC  G  
Sbjct: 450 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 500



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 174/375 (46%), Gaps = 5/375 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+  L   G +  AL + D M   G +   + +G  + + C   K G     LD  RK
Sbjct: 208 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC---KSGNSALALDLFRK 264

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I  SV+   ++I   CK    ++A  + +E+ ++  K D + Y  +       G 
Sbjct: 265 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 324

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L++     + P    +   I   + E ++ EAKEL   +++     D    N+
Sbjct: 325 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 384

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G         A   F+ M+ KG  P + T S L  + CK  + D+ + +++ +S+  
Sbjct: 385 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 444

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +YN +V   C SG+L  A  + QEM  +G+ P V  Y  L++  C    L  A 
Sbjct: 445 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 504

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +++++M  S  +  +  YNI+I       +++ A  LF ++ +KGV PD  TY  ++ GL
Sbjct: 505 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 564

Query: 516 CQETNLQAAFEVFNK 530
           C++ +L  A  +F K
Sbjct: 565 CKKGSLSEADMLFRK 579



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 195/465 (41%), Gaps = 46/465 (9%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV 110
           L  RV    +L    +  GF      QP+     ++Y  +L  L  S        + +++
Sbjct: 216 LKGRVSEALVLIDRMVEYGF------QPD----EVTYGPVLNRLCKSGNSALALDLFRKM 265

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           +   I      Y  +I SL +  +   A S+FNE++           +SL+  L +DG  
Sbjct: 266 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 325

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+  KM  EM  R +    + F   I  F +  KL +   + +E+  R   +   ++   
Sbjct: 326 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR--GIAPDTITYN 383

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I GFCK   + EA ++ D +  + C+PD + Y I+   +     V +   + ++    
Sbjct: 384 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 443

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P T  Y   +LG     ++  AKEL                                
Sbjct: 444 GLIPNTITYNTLVLGFCQSGKLNAAKEL-------------------------------- 471

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F  M+ +G  P++ T   L   LC   + ++ +E+++ +  +     +  YN+++  +
Sbjct: 472 --FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 529

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + ++ +A+ +   +  KG+ PDV  YN ++   C++  L  A  L+ +M   GC+ + 
Sbjct: 530 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 589

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            TYNILI        +  ++ L   M   G + D++T   +++ L
Sbjct: 590 FTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 196/420 (46%), Gaps = 11/420 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I+ +C+ K++  AF VL        +PD I +  +   F L G V E   ++ +  ++
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD----DVLNALIGSVSSIDP 346
              P        I GL ++ R+ EA  L + +V   F  D+     VLN L  S +S   
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS--- 255

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+  F  M E+    ++   S +  +LCK    D+ + ++  +       D+ +Y+ +
Sbjct: 256 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 315

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  G+  +   +++EM  + + PDV  +++L++   +E  L  AK+L+++M   G 
Sbjct: 316 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 375

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + +  TYN LI  F +   +  A ++F  M+ KG  PD  TY+ L+   C+   +     
Sbjct: 376 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 435

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
           +F +  +  ++      +T ++  C+ G    A +L + + S  G   S V   ILL  L
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGL 494

Query: 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            D  E+  A+E  + +Q+S  T+   I   +   + ++S  +    L  +L +K +  ++
Sbjct: 495 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 554



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 160/360 (44%), Gaps = 9/360 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL- 231
           AL +F +M  R ++ S + + + I   C++      LS+ +E+   E   I   V+    
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM---EMKGIKADVVTYSS 314

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C   + ++  K+L E+  R   PD + +  + + F   G + E + +  +    G
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRS 348
           +AP T  Y   I G   E  + EA ++ +++VS     D    + LI S      +D   
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD--D 432

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            +  F  +  KG +P   T + L    C+  K +   E+++ + +      + +Y +++ 
Sbjct: 433 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLD 492

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G L +A  + ++M++  +   +  YN ++   C    +  A  L+  +   G   
Sbjct: 493 GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP 552

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TYN++I    + G +  A  LF  M E G  PD  TY  L+      + L ++ E+ 
Sbjct: 553 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 612


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/505 (22%), Positives = 236/505 (46%), Gaps = 38/505 (7%)

Query: 78  PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKI----TLDS---------S 120
           PNF H+ LS     H +++S  LS   + +  ++++  V+++    +LDS         S
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           V+  +I + +Q +  ++A   F  ++     +  + CN+L+  L   G+++ A  ++ E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
           S  GV  +     + +   C++ K+ +V + L +V+  E  +    V    +I  +    
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ--EKGVYPDIVTYNTLISAYSSKG 284

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            +EEAF++++ +  +   P    Y  V       G     + V  +  + G++P +  YR
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALI--GSVSSIDPRS-----AI 350
             ++         EA + G+V+ + K   D    DV+  L+   S+ S+  RS     A+
Sbjct: 345 SLLM---------EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           ++FN + E G +P     + L +  C++      + +   +       D+ +YN ++  L
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C    L EA  +  EM  + L PD      L++  C+   L+ A +L+ +M       ++
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV 515

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN L+  F +VG+I+ A  ++ +M+ K + P   +Y+ L+  LC + +L  AF V+++
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575

Query: 531 SVNHDVMLARSILSTFMISLCRRGH 555
            ++ ++     I ++ +   CR G+
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGN 600



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 216/465 (46%), Gaps = 20/465 (4%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           + P ++T+++L   +         F   +  P    SP   +Y++++  L    +     
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-IC-NSLLA 162
            V  ++  + ++ DS+ YR ++    +  +  +   VF++++    D+ P+ +C +S+++
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR--SRDVVPDLVCFSSMMS 383

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           +    G +D AL  F+ +   G+    + + + I  +C    +   +++ +E+ ++  +M
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
               V    I+HG CK K + EA K+ +E+  R   PD     I+ +    +G++     
Sbjct: 444 --DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           + +K ++  +      Y   + G      I  AKE+   +VS +        + L+ ++ 
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALC 561

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S    + A   ++ MI K   PT+   +++ K  C+   + +     + + +  +  D  
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           SYN ++        + +A+G++++M+ +  GL PDV  YNS++   CR++ ++ A+ +  
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           +M   G + +  TY  +I+ F     +  A R+   ML++G +PD
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 121/581 (20%), Positives = 232/581 (39%), Gaps = 53/581 (9%)

Query: 34  LEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKS 93
           L+ T    G  DS+   L+   +    L     A        +   FT S  + ++++ S
Sbjct: 154 LDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLL----RSKGFTVSIDACNALIGS 209

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153
           L     +     V +++  + + ++      ++ +L +    +K  +  ++V+   + + 
Sbjct: 210 LVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE--KGVY 267

Query: 154 PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P+I   N+L++  +S G ++ A ++ + M  +G       +   I   C++ K  +   +
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
             E+ +   S  + +  ++L+    CK   V E  KV  ++R R+  PD + +  +   F
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLM--EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G++ +  +     ++ G+ P    Y   I G   +  I  A  L   ++     +D 
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N ++ G         A   FN M E+   P   TL+ L    CK       +E+++ 
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQK 505

Query: 391 L--------------------------SANDYFTDMES---------YNVMVSFLCTSGR 415
           +                          +A + + DM S         Y+++V+ LC+ G 
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGH 565

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA+ V  EM  K + P V   NS+++  CR       +   ++M + G   +  +YN 
Sbjct: 566 LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNT 625

Query: 476 LISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           LI  F     +  A  L   M E+  G+ PD  TY S+L G C++  ++ A  V  K + 
Sbjct: 626 LIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSD 569
             V   RS  +  +     + +   A +     L RG S D
Sbjct: 686 RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 146/331 (44%), Gaps = 40/331 (12%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID------------PRSAI------- 350
           R++ EA E   ++ S  FT+  D  NALIGS+  I              RS +       
Sbjct: 179 RKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTL 238

Query: 351 -----------------VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
                             F + + EKG  P + T + L      +   +E  E+   +  
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-LMEACCREDLLR 452
             +   + +YN +++ LC  G+   A  V  EM R GL PD + Y S LMEAC + D++ 
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
             +K++  M +     +L  ++ ++S F+  G ++ AL  F+++ E G+ PD   YT L+
Sbjct: 359 -TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 417

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
           +G C++  +  A  + N+ +     +     +T +  LC+R     A KL   ++     
Sbjct: 418 QGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF 477

Query: 573 SDSH--VILLKSLADAREVEMAIEHIKWIQE 601
            DS+   IL+        ++ A+E  + ++E
Sbjct: 478 PDSYTLTILIDGHCKLGNLQNAMELFQKMKE 508



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/390 (18%), Positives = 146/390 (37%), Gaps = 40/390 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y S+L        +   + V   ++   +  D   +  ++    +  N  KA   FN V
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K         I   L+      G I  A+ + +EM  +G     + +   +   C+   L
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           G+   + +E+ +R  ++   S    ++I G CK   ++ A ++  +++ +  + D + Y 
Sbjct: 462 GEADKLFNEMTER--ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + F  +G +   + +        + P    Y   +  L  +  + EA  + + ++S 
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK 579

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP---TLSTL-------SNLSK- 373
                  + N++I G   S +      F   MI +G VP   + +TL        N+SK 
Sbjct: 580 NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKA 639

Query: 374 --------------------------NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                                       C++N+  E   V + +       D  +Y  M+
Sbjct: 640 FGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +   +   L EA+ +  EM ++G  PD  F
Sbjct: 700 NGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 205/454 (45%), Gaps = 14/454 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +S++SIL  L   R+++   S+ + +K +    +SS Y  II  L  G   ++A+ + 
Sbjct: 87  SVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRIL 145

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E++     + P +   N ++  L     ++ A K+F+  S RG     + +   I    
Sbjct: 146 DEMEH--ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 203

Query: 201 ENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +  ++ +   + +   +     N ++  S+I    IHG     R E+  K+  EL  R C
Sbjct: 204 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG-----RKEDGHKIFKELIRRGC 258

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KPD        +     G V +  ++ +  R  G  P    Y   I GL    +  E   
Sbjct: 259 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSN 318

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           +   +    F +D    NA++ G   S     A      M EK   PT++T   +   L 
Sbjct: 319 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 378

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++EM +KGL P+V 
Sbjct: 379 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 438

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +NSL++A  + + +  A   +  M    C  N  TY+ILI+    V +   A   + +M
Sbjct: 439 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 498

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            ++G+ P+  TYT+++ GL +  N+  A+ +F +
Sbjct: 499 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFER 532



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 211/490 (43%), Gaps = 9/490 (1%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF+    Q       +SY S++  L  + ++   + +  Q++  +    +  Y  +
Sbjct: 1   MAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 59

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I         + A+ +   ++       P +   NS+L  L     +D AL +F+ M  +
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRE--RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-K 116

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
             E ++  + + I   C   ++ +   +LDE+     S+    +   +++   CK +++E
Sbjct: 117 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME--HASLFPNLLTVNIMVDRLCKARKLE 174

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA+K+ +    R C PD + Y  + +     G V E   + +K    G       Y   I
Sbjct: 175 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 234

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRV 362
               +  R  +  ++ + ++      D  +LN  +  V  + +     + F  +   G +
Sbjct: 235 RNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL 294

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + + S L   L K  ++ E   ++  +    +  D  +YN +V   C SG++ +AY +
Sbjct: 295 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 354

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++EMK K + P V+ Y ++++   + D L  A  L+++  + G   N+  Y+ LI  F +
Sbjct: 355 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 414

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           VG I+ A  +   M++KG+ P+  T+ SLL+ L +   +  A   F              
Sbjct: 415 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 474

Query: 543 LSTFMISLCR 552
            S  +  LCR
Sbjct: 475 YSILINGLCR 484



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/449 (20%), Positives = 188/449 (41%), Gaps = 45/449 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++    S G  ++A K+ + +  RG   S + F   +    +  K+ + LS+ + ++K
Sbjct: 57  NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 116

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             ++  N S   + II   C G RVEEA+++LDE+      P+ +   I+ +       +
Sbjct: 117 --DAEPNSSTYNI-IIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKL 173

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   + +   + G  P    Y   I GL  + ++ EA  L E ++      +  V  +L
Sbjct: 174 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSL 233

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           I               NF I   +         L +  CK                    
Sbjct: 234 IR--------------NFFIHGRKEDGHKIFKELIRRGCK-------------------- 259

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+   N  +  +  +G + +   + ++++  G  PDV  Y+ L+    +    R    +
Sbjct: 260 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 319

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +  M   G + + + YN ++  F + G++  A  +   M EK V P   TY ++++GL +
Sbjct: 320 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379

Query: 518 ETNLQAAFEVF----NKSVNHDVMLARSILSTF-MISLCRRGHFLVATKLLRGLSSDLGH 572
              L  A+ +F    +K +  +V+L  S++  F  +      + ++   + +GL+ ++  
Sbjct: 380 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 439

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQE 601
            +S   LL +L  A E+  A+   + ++E
Sbjct: 440 WNS---LLDALVKAEEINEALVCFQSMKE 465



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 2/266 (0%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   I  L    R+ EA+EL   + + +        N +I G  S+     A
Sbjct: 13  GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDA 72

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 + E+G +P++ + +++   L K+ K DE + +++V+   D   +  +YN+++  
Sbjct: 73  YKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDM 131

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GR+ EAY ++ EM+   L P++   N +++  C+   L  A K+++     GC+ +
Sbjct: 132 LCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPD 191

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY  LI    + G+++ A RLF  ML+ G   +   YTSL+         +   ++F 
Sbjct: 192 CVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFK 251

Query: 530 KSVNHDVMLARSILSTFMISLCRRGH 555
           + +        ++L+T+M  + + G 
Sbjct: 252 ELIRRGCKPDLTLLNTYMDCVFKAGE 277



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/246 (16%), Positives = 105/246 (42%), Gaps = 2/246 (0%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A +Q  F     +Y++++     S +++    +L+++K   +    + Y  I+  L +  
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 381

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A+ +F E K    ++   + +SL+      G ID A  + +EM  +G+  +   + 
Sbjct: 382 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 441

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +    +  ++ + L     +  +E      +    ++I+G C+ ++  +AF    +++
Sbjct: 442 SLLDALVKAEEINEALVCFQSM--KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 499

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +   P+ + Y  +      +G++ +   + ++ +  G  P    +   I G+    R  
Sbjct: 500 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAM 559

Query: 314 EAKELG 319
           EA + G
Sbjct: 560 EAYQAG 565


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 207/478 (43%), Gaps = 29/478 (6%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++  L    ++  +  VL++++   +  D   Y  +I    +  + +KAF +   + 
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMV 421

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N         N+LL    S   ID+AL+++  M  RGV  + I     +    +  K  
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTE 481

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           Q L++  E   R   +    +    +I+G CK  R+ EA ++LD ++   C PD + YR 
Sbjct: 482 QALNLWKETLAR--GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRT 539

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + +  +G +     ++ K   LG AP    +  FI G  + ++  +  ++   + +  
Sbjct: 540 LFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARG 599

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE-- 383
            + +     ALI G     +   A   +  M+  G  P +   S L     K  K DE  
Sbjct: 600 LSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEAN 659

Query: 384 ------------------LVEVYKVLSANDYFTDMES------YNVMVSFLCTSGRLREA 419
                              +E+ K+    D   D         +NV++  LC SGR+ +A
Sbjct: 660 LVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADA 719

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + + ++ K   PD   Y+SL+  C     +  A  L D M ++G + N+ TYN LI  
Sbjct: 720 KSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYG 779

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             + G++  A+ LF+ +  KG++P+  TY +L++  C+E     AF++  K V    M
Sbjct: 780 LCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYM 837



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 12/410 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL   A  G + +AL +FD M   G   S       + K  ++   G    +  ++R   
Sbjct: 154 LLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIA- 212

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             ++       ++   +C+  RV +A + ++E+     + + +AY  V + +  MG   +
Sbjct: 213 -GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTED 271

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALI 338
              +L+  ++ G++P    Y   + G   + R+ EA+ +  E+  +G   +D+     +I
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G         A    N M + G    L   + +   LCK  + +E+ +V + +      
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMR 391

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  SYN ++   C  G +R+A+ + + M R GL      YN+L++  C    +  A +L
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           W  M   G + N  + + L+    + G+ E AL L+   L +G+A +  T+ +++ GLC+
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 518 ETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              +  A E+ ++        D +  R++   +    C+ G    AT L+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGY----CKLGQLGTATHLM 557



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 187/472 (39%), Gaps = 93/472 (19%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C++LL  L   G  + AL ++ E   RG+  + I F   I   C+  ++ +   +LD  R
Sbjct: 467 CSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLD--R 524

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD------FIAYRIVAEE 270
            +E      S+    +  G+CK  ++  A  +++++      P       FI    +A++
Sbjct: 525 MKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQ 584

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS------ 324
           +  +  +        +    G++P    Y   I G   E  + EA  L   +V+      
Sbjct: 585 WHKVNDIHS------EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPN 638

Query: 325 --------------GKF----------------------TIDDDVLNALIGSVSSIDPRS 348
                         GK                       TI+ D ++ ++ +++  +P S
Sbjct: 639 VFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHS 698

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V +N +I                 LCK  +  +   +++ L    +  D  +Y+ ++ 
Sbjct: 699 ANVMWNVII---------------FGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
               SG + EA+ +   M   GL P++  YNSL+   C+   L  A  L++++ + G S 
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP 803

Query: 469 NLKTYNILISKFS----------------EVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           N  TYN LI ++                 E G +E A++L   M+E  V P+  TY +L+
Sbjct: 804 NGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLI 863

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            G  +  N++   +++      D M  R +L T  I   +R   +V     R
Sbjct: 864 HGYIKSGNMEEISKLY------DEMHIRGLLPTNWIGNWKRSDPVVVNNWNR 909



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 110/225 (48%), Gaps = 1/225 (0%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V S DP  A + +  M   G +P   T++ ++K  C+  +  + VE  + +       ++
Sbjct: 194 VQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNL 253

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+ ++   C  G   +A  +++ ++RKGL P+V  Y  L++  C++  +  A+++  +
Sbjct: 254 VAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313

Query: 461 MFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           M  +G    +   Y ++I+ + + G ++ A R+ + M + G+  +   Y +++ GLC+  
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLG 373

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            ++   +V  +  +  +   +   +T +   CR G    A ++ R
Sbjct: 374 RMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 8/179 (4%)

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           ++ L+ A      L  A  ++D M   GC  +L++ N L++K  + G+   A  ++  M 
Sbjct: 151 FDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR 210

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             GV PD  T   + +  C++  +  A E   +     + +        M   C  G   
Sbjct: 211 IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTE 270

Query: 558 VATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
            A ++L     +GLS ++    ++ +L+K       +E A   +K ++E+   ++ E++
Sbjct: 271 DARRILESLQRKGLSPNV---VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVA 326


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 181/411 (44%), Gaps = 25/411 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L + +A     D  L     M   G+E       + I  +C   KL    S+L    K
Sbjct: 74  NRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWK 133

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E   I  S +    ++GFC   RV EA  ++D +   + +PD +    +     L G
Sbjct: 134 LGYEPDTITFSTL----VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 189

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFI----------LGLIVERRICEAKELGEVIVSG 325
            V E  V++ +  + G  P    Y   +          L L + R++ E + +   +V  
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQY 248

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              ID       +    S D   A+  FN M  KG    + T S+L   LC   K D+  
Sbjct: 249 SIVIDS------LCKDGSFD--DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++ + +   +   D+ +++ ++      G+L EA  +  EM  +G+ PD   YNSL++  
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+E+ L  A +++D M + GC  ++ TY+ILI+ + +   ++  +RLF  +  KG+ P+ 
Sbjct: 361 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNT 420

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            TY +L+ G CQ   L AA E+F + V+  V  +       +  LC  G  
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 174/375 (46%), Gaps = 5/375 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+  L   G +  AL + D M   G +   + +G  + + C   K G     LD  RK
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC---KSGNSALALDLFRK 235

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I  SV+   ++I   CK    ++A  + +E+ ++  K D + Y  +       G 
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L++     + P    +   I   + E ++ EAKEL   +++     D    N+
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G         A   F+ M+ KG  P + T S L  + CK  + D+ + +++ +S+  
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +YN +V   C SG+L  A  + QEM  +G+ P V  Y  L++  C    L  A 
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +++++M  S  +  +  YNI+I       +++ A  LF ++ +KGV PD  TY  ++ GL
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535

Query: 516 CQETNLQAAFEVFNK 530
           C++ +L  A  +F K
Sbjct: 536 CKKGSLSEADMLFRK 550



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 195/465 (41%), Gaps = 46/465 (9%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV 110
           L  RV    +L    +  GF      QP+     ++Y  +L  L  S        + +++
Sbjct: 187 LKGRVSEALVLIDRMVEYGF------QPD----EVTYGPVLNRLCKSGNSALALDLFRKM 236

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           +   I      Y  +I SL +  +   A S+FNE++           +SL+  L +DG  
Sbjct: 237 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+  KM  EM  R +    + F   I  F +  KL +   + +E+  R   +   ++   
Sbjct: 297 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR--GIAPDTITYN 354

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I GFCK   + EA ++ D +  + C+PD + Y I+   +     V +   + ++    
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P T  Y   +LG     ++  AKEL                                
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKEL-------------------------------- 442

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F  M+ +G  P++ T   L   LC   + ++ +E+++ +  +     +  YN+++  +
Sbjct: 443 --FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + ++ +A+ +   +  KG+ PDV  YN ++   C++  L  A  L+ +M   GC+ + 
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            TYNILI        +  ++ L   M   G + D++T   +++ L
Sbjct: 561 FTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 196/420 (46%), Gaps = 11/420 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I+ +C+ K++  AF VL        +PD I +  +   F L G V E   ++ +  ++
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD----DVLNALIGSVSSIDP 346
              P        I GL ++ R+ EA  L + +V   F  D+     VLN L  S +S   
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS--- 226

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+  F  M E+    ++   S +  +LCK    D+ + ++  +       D+ +Y+ +
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  G+  +   +++EM  + + PDV  +++L++   +E  L  AK+L+++M   G 
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + +  TYN LI  F +   +  A ++F  M+ KG  PD  TY+ L+   C+   +     
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
           +F +  +  ++      +T ++  C+ G    A +L + + S  G   S V   ILL  L
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGL 465

Query: 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            D  E+  A+E  + +Q+S  T+   I   +   + ++S  +    L  +L +K +  ++
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 525



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 160/359 (44%), Gaps = 9/359 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL- 231
           AL +F +M  R ++ S + + + I   C++      LS+ +E+   E   I   V+    
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM---EMKGIKADVVTYSS 285

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C   + ++  K+L E+  R   PD + +  + + F   G + E + +  +    G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRS 348
           +AP T  Y   I G   E  + EA ++ +++VS     D    + LI S      +D   
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD--D 403

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            +  F  +  KG +P   T + L    C+  K +   E+++ + +      + +Y +++ 
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLD 463

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G L +A  + ++M++  +   +  YN ++   C    +  A  L+  +   G   
Sbjct: 464 GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP 523

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           ++ TYN++I    + G +  A  LF  M E G  PD  TY  L+      + L ++ E+
Sbjct: 524 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 582



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 5/236 (2%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    AI  F  MI+   +PT    + L   + +  + D ++   K +  N    D
Sbjct: 45  GIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD 104

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           M +  +M++  C   +L  A+ V+    + G +PD   +++L+   C E  +  A  L D
Sbjct: 105 MYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVD 164

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M       +L T + LI+     G +  AL L   M+E G  PD  TY  +L  LC+  
Sbjct: 165 RMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 224

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           N   A ++F K    ++  +    S  + SLC+ G F  A  L     ++G+ +D+
Sbjct: 225 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 141/594 (23%), Positives = 257/594 (43%), Gaps = 63/594 (10%)

Query: 13  ISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN 72
           IS  +IS   + +P     P LE       L   LS +++  VI   +  +  L   FF 
Sbjct: 33  ISGEVISILAKKKPIE---PALEP------LVPFLSKNIITSVIKEEV--NRQLGFRFFI 81

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           WAS++     S  S+  ++  LS     +     L+++K   +++DS  +  +I +  + 
Sbjct: 82  WASRRERL-RSGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKM 140

Query: 133 KNTQKAFSVFNEVK-FNCEDIGPEI--CNSLLAVLA-SDGYIDNALKMFDEMSHRGVEFS 188
              +KA   F  +K F+C    P++   N +L ++   D +   A  +++EM       +
Sbjct: 141 GLAEKAVESFGRMKEFDCR---PDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPN 197

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
              FG+ +    +  +      M D++  R  S     V   ++I G C+    E+A K+
Sbjct: 198 LYTFGILMDGLYKKGRTSDAQKMFDDMTGRGIS--PNRVTYTILISGLCQRGSPEDARKL 255

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
             E++     PD +A+  + + F  +G + E   +L+   K G       Y   I GL  
Sbjct: 256 FYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFR 315

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLST 367
            RR  +A EL   ++      D  +   LI  +S       A+     M  KG  P    
Sbjct: 316 ARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYC 375

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + + K LC R   +E   +   +S  + F D  ++ +++  +C +G +R+A  +  E++
Sbjct: 376 YNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIE 435

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM-------------------------- 461
           + G  P V+ +N+L++  C+   L+ A+ L  +M                          
Sbjct: 436 KSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQS 495

Query: 462 ------------FA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                       FA +G S ++ +YN+LI+ F   G+I+GAL+L + +  KG++PD+ TY
Sbjct: 496 GSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTY 555

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            +L+ GL +    + AF++F      D   + ++  + M   CRR   LVA  L
Sbjct: 556 NTLINGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRRRKLLVAFNL 607



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 2/289 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   +N M++    P L T   L   L K+ ++ +  +++  ++      +  +Y +++S
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G   +A  +  EMK  G  PD   +N+L++  C+   +  A +L       G   
Sbjct: 242 GLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVL 301

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            L+ Y+ LI           A  L+ NML++ + PD   YT L++GL +   ++ A ++ 
Sbjct: 302 GLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLL 361

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
               +  +       +  + +LC RG       L   +S      D  +H IL+ S+   
Sbjct: 362 RSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRN 421

Query: 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
             V  A E    I++S  +        L   L  S   +   LLLH ++
Sbjct: 422 GLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME 470



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 180/471 (38%), Gaps = 40/471 (8%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           +R +I    +    Q+++S  N  +FN       I   ++++LA    I+ AL+      
Sbjct: 7   FRSVIQFYSKPSWMQRSYSSGN-AEFN-------ISGEVISILAKKKPIEPALEPLVPFL 58

Query: 182 HRGVEFSTI--------GFGVFIW-----KFCENAKLGQVLSMLDEVRK----------- 217
            + +  S I        GF  FIW     +       G V+ ML E              
Sbjct: 59  SKNIITSVIKEEVNRQLGFRFFIWASRRERLRSGESFGLVIDMLSEDNGCDLYWQTLEEL 118

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY----RIVAEEFKL 273
           +   +   S    ++I  + K    E+A +    ++  +C+PD   Y    RI+  E   
Sbjct: 119 KSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVF 178

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
               F    V  +  K   +P    +   + GL  + R  +A+++ + +     + +   
Sbjct: 179 FMLAF---AVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVT 235

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              LI G      P  A   F  M   G  P     + L    CK  +  E  E+ ++  
Sbjct: 236 YTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFE 295

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            + +   +  Y+ ++  L  + R  +A+ +   M ++ + PD+  Y  L++   +   + 
Sbjct: 296 KDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIE 355

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A KL   M + G + +   YN +I      G +E    L   M E    PDA T+T L+
Sbjct: 356 DALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILI 415

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             +C+   ++ A E+F +        + +  +  +  LC+ G    A  LL
Sbjct: 416 CSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLL 466


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 216/475 (45%), Gaps = 13/475 (2%)

Query: 137 KAFSVFNEVKFNCEDIGP-EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +AFSVFN +  + +   P    N+LL  +A      + + ++  MS  G+    I   + 
Sbjct: 75  EAFSVFNHL-IDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNIL 133

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I  +C   K+   L++L E+ +R +S    +V    ++ G C G R+ EA  +L ++   
Sbjct: 134 INCYCNLNKVDFGLAVLGEMLRRGHS--PNTVTFTSLVKGLCLGSRISEATGLLRKMVRM 191

Query: 256 ECKPDFIAYRIVAEEFKLMG----SVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVE 309
             +P+ + Y  +     + G    +V   E +L      GV  + N   Y   I  L  +
Sbjct: 192 GYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKD 251

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             I + KEL   +     + D    +++I G   +     A   FN M+++G  P + T 
Sbjct: 252 GLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTF 311

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L   LCK  K +E   + K++       D  +YN ++   C  GR+ +A  +   M+ 
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMES 371

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG++ D   YN L+   C+   +  AKKL+ +M        + TYN L++     G++  
Sbjct: 372 KGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRD 431

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  LF  M    + P++ TY  LL+GLC+  +L  A E+F+   NHD   +  I +  + 
Sbjct: 432 AWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLID 491

Query: 549 SLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQE 601
            LC+     +A +L   LS +    +  ++ +++  L  + ++E A +    ++E
Sbjct: 492 GLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEE 546



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/472 (23%), Positives = 196/472 (41%), Gaps = 46/472 (9%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           HSP  +++ S++K L L  +I+    +L+++       +   Y  ++  L    NT  A 
Sbjct: 158 HSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAV 217

Query: 140 SVFNEVKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            +  E+       G  I  +L+        L  DG ID   ++F EM  RG+    + + 
Sbjct: 218 KLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYS 277

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
                                                 IIHG C   R E A  + +E+ 
Sbjct: 278 S-------------------------------------IIHGMCHTGRWEGAKGLFNEMV 300

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                P+ + + ++ +     G + E   +LK   + G +P T  Y   I G  +E RI 
Sbjct: 301 DEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID 360

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A++L   + S     D    N LI G   S     A   +  M+ K  +PT+ T + L 
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLL 420

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L +  K  +   ++  +  +D   +  +YN+++  LC +  L EA  +   ++     
Sbjct: 421 TGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQ 480

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N L++  C+   +  A++L++++   G   N+ TY ++I    + G++E A  L
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDL 540

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           F  M EKG AP+  T+ +L+ G CQ   +Q   E+  +    D     S +S
Sbjct: 541 FLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTIS 592



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 161/395 (40%), Gaps = 11/395 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     + Y +I+ SL     I+    +  ++K   I+ D   Y  II  +      +
Sbjct: 235 KPNL----VCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWE 290

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A  +FNE+    E + P +   N L+  L   G ++ A  +   M  RG    T  +  
Sbjct: 291 GAKGLFNEMVD--EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNT 348

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  FC   ++     +   V      +   +V   ++I+G+CK  R+ EA K+  E+  
Sbjct: 349 LIDGFCLEGRIDDARDLF--VSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMC 406

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +E  P  I Y  +       G V +   +  + +   + P +  Y   + GL     + E
Sbjct: 407 KEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSE 466

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A EL   + +  F     + N LI G   +     A   FN +  +G  P + T + +  
Sbjct: 467 AMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIH 526

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  + +   +++  +       ++ ++N ++   C +  +++   ++QEM  K   P
Sbjct: 527 GLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSP 586

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           D S  + +++   +++  R    L     A G +G
Sbjct: 587 DASTISIVVDLLSKDEKYREYLHLLPTFPAQGQTG 621


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 202/492 (41%), Gaps = 52/492 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A     G++D A ++   M    V      +   I   C+  ++   LS+LD++ +
Sbjct: 114 NTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR 170

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R        V   +++   CK    E+A  VLDE+R + C P+ + Y ++       G V
Sbjct: 171 R--GCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 228

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L +    G  P T  Y   + GL   +R  + +EL                   
Sbjct: 229 DDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEEL------------------- 269

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                          F  M+EK  +P   T   L +  C+    +  ++V + ++ ++  
Sbjct: 270 ---------------FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECA 314

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           T+    N++++ +C  GR+ +A+  +  M   G +PD   Y ++++  CR +    AK+L
Sbjct: 315 TNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKEL 374

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             +M  + C  N  T+N  I    + G IE A+ L   M E G      TY +L+ G C 
Sbjct: 375 LKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCV 434

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--- 574
           + ++ +A E+F         +     +T +  LC       A +L+    +++ H D   
Sbjct: 435 QGHIDSALELFRSMPCKPNTIT---YTTLLTGLCNAERLDAAAELV----AEMLHRDCPP 487

Query: 575 ---SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631
              +  +L+        ++ AIE ++ + E   T        LF  ++     E  L LL
Sbjct: 488 NVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELL 547

Query: 632 HALQEKCLDSEI 643
           H L  K +  ++
Sbjct: 548 HGLVSKGVSPDV 559



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 220/498 (44%), Gaps = 20/498 (4%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y  +L+++  +       +VL +++    T +   Y  II  + +     
Sbjct: 174 QPNV----VTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 137 KAFSVFNEV-KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            A  + N +  + C+   P+  +  +LL  L +    D+  ++F EM  +    + + F 
Sbjct: 230 DARDLLNRLFSYGCQ---PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 286

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           + I  FC    + + + +L ++ + E +    + +  ++I+  CK  RV++AFK L+ + 
Sbjct: 287 MLIRFFCRGGMVERAIQVLQQMTEHECA--TNTTLCNIVINSICKQGRVDDAFKFLNNMG 344

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD I+Y  V +         + + +LK+  +    P    +  FI  L  +  I 
Sbjct: 345 SYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIE 404

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           +A  L E +     T+     NAL+        ID  SA+  F  M  K   P   T + 
Sbjct: 405 QAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHID--SALELFRSMPCK---PNTITYTT 459

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LC   + D   E+   +   D   ++ ++NV+V+F C  G L EA  ++++M   G
Sbjct: 460 LLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHG 519

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
             P++  YN+L +   ++     A +L   + + G S ++ T++ +I   S+   +E A+
Sbjct: 520 CTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAI 579

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           ++FH   + G+ P A  Y  +L GLC+   +  A +     V++  M   S     +  L
Sbjct: 580 QMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGL 639

Query: 551 CRRGHFLVATKLLRGLSS 568
            R G    A  LL  L S
Sbjct: 640 AREGLLKEAQDLLSMLCS 657



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 32/240 (13%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS----------- 408
           G  P +   + L +NLC+R ++ +   V +    +    D+ +YN +V+           
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 409 ---------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
                                 LC  GR+ +A  ++ +M R+G  P+V  Y  L+EA C+
Sbjct: 130 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                 A  + D+M A GC+ N+ TYN++I+     G ++ A  L + +   G  PD  +
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS 249

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           YT+LL+GLC         E+F + +  + M         +   CR G    A ++L+ ++
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMT 309



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           R G  PDV     L+   CR      A ++      SG   ++  YN L++ +   G ++
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A RL  +M    VAPDA TYT L+  LC    +  A  + +  +           +  +
Sbjct: 128 AARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLL 184

Query: 548 ISLCRRGHFLVATKLL 563
            ++C+   F  A  +L
Sbjct: 185 EAMCKNSGFEQAMAVL 200


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 217/480 (45%), Gaps = 26/480 (5%)

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           N  DI P  C +L+      G    A K+ + +   G     I + V I  +C+  ++  
Sbjct: 133 NVPDIIP--CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINN 190

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            LS+LD +     S+    V    I+   C   ++++A +VLD +  R+C PD I Y I+
Sbjct: 191 ALSVLDRM-----SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTIL 245

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSG- 325
            E       V     +L + R  G  P    Y   + G+  E R+ EA K L ++  SG 
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305

Query: 326 --KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                  + +L ++  +   +D    +     M+ KG  P++ T + L   LC++     
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLAD---MLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++ + +  +    +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+++ 
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C++  +  A ++ +Q+ + GCS  L TYN +I   ++ G+   A++L   M  K + P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  TY+SL+ GL +E  +  A + F++     +       ++ M+ LC+      A   L
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542

Query: 564 -----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE-SSPTMLQEISAELFAS 617
                RG   +     S+ IL++ LA      MA E ++ + E  +  ++++ SAE  A 
Sbjct: 543 VFMINRGCKPN---ETSYTILIEGLAYE---GMAKEALELLNELCNKGLMKKSSAEQVAG 596



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 189/423 (44%), Gaps = 10/423 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +      A SV + +      + P++   N++L  L   G +  A++
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + D M  R      I + + I   C ++ +G  + +LDE+R R        V   ++++G
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR--GCTPDVVTYNVLVNG 283

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R++EA K L+++    C+P+ I + I+       G   + E +L    + G +P 
Sbjct: 284 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 343

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFN 354
              +   I  L  +  +  A ++ E +       +    N L+ G         AI +  
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+ +G  P + T + +   LCK  K ++ VE+   LS+      + +YN ++  L  +G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A  ++ EM+ K L PD   Y+SL+    RE  +  A K + +    G   N  T+N
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            ++    +  + + A+     M+ +G  P+ T+YT L+EGL  E   + A E+ N+  N 
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583

Query: 535 DVM 537
            +M
Sbjct: 584 GLM 586



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 165/350 (47%), Gaps = 8/350 (2%)

Query: 219 ENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           EN + +G+V  ++    +I GFC+  +  +A K+L+ L      PD I Y ++   +   
Sbjct: 126 ENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKA 185

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +     VL +   + V+P    Y   +  L    ++ +A E+ + ++      D    
Sbjct: 186 GEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             LI  +        A+   + M ++G  P + T + L   +CK  + DE ++    + +
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    ++ ++N+++  +C++GR  +A  ++ +M RKG  P V  +N L+   CR+ LL  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + ++M   GC  N  +YN L+  F +  +++ A+     M+ +G  PD  TY ++L 
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            LC++  ++ A E+ N+  +          +T +  L + G    A KLL
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 323 VSGKFTIDD-DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V+  F ++D +  N L   V + +      F   M+  G VP +   + L +  C+  K+
Sbjct: 94  VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            +  ++ ++L  +    D+ +YNVM+S  C +G +  A  V+  M    + PDV  YN++
Sbjct: 154 RKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTI 210

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + + C    L+ A ++ D+M    C  ++ TY ILI        +  A++L   M ++G 
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGC 270

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            PD  TY  L+ G+C+E  L  A +  N   +          +  + S+C  G ++ A K
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 562 LL 563
           LL
Sbjct: 331 LL 332



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 10/331 (3%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +EE FK L+ +      PD I    +   F  +G   +   +L+     G  P    Y  
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177

Query: 302 FILGLIVERRICEAKELGEVI-VSGKFTIDDDVL--NALIGSV-SSIDPRSAIVFFNFMI 357
            I G       C+A E+   + V  + ++  DV+  N ++ S+  S   + A+   + M+
Sbjct: 178 MISGY------CKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++   P + T + L +  C+ +     +++   +       D+ +YNV+V+ +C  GRL 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA   + +M   G  P+V  +N ++ + C       A+KL   M   G S ++ T+NILI
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +     G +  A+ +   M + G  P++ +Y  LL G C+E  +  A E   + V+    
Sbjct: 352 NFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                 +T + +LC+ G    A ++L  LSS
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 9/188 (4%)

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           Y  ++++    D+ES N +   + T G L E +  ++ M   G  PD+    +L+   CR
Sbjct: 91  YSSVNSSFALEDVESNNHLRQMVRT-GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCR 149

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
               R A K+ + +  SG   ++ TYN++IS + + GEI  AL +   M    V+PD  T
Sbjct: 150 LGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVT 206

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL---- 563
           Y ++L  LC    L+ A EV ++ +  D        +  + + CR      A KLL    
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query: 564 -RGLSSDL 570
            RG + D+
Sbjct: 267 DRGCTPDV 274



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           LR   SPS+V   I    L    L     +   + P     P  LSY+ +L      +++
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L+++       D   Y  ++ +L +    + A  + N+   + +   P +   N
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ--LSSKGCSPVLITYN 453

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  LA  G    A+K+ DEM  + ++  TI +   +       K+ + +    E  + 
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N++   S     I+ G CK ++ + A   L  +  R CKP+  +Y I+ E     G
Sbjct: 514 GIRPNAVTFNS-----IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568

Query: 276 SVFE 279
              E
Sbjct: 569 MAKE 572


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 218/480 (45%), Gaps = 14/480 (2%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       D   Y 
Sbjct: 108 LDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYN 167

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEIC--NSLLAVLASDGYIDNALKMF 177
            ++  L     +Q+A  + + +    +D G    P++   N++L     +G  D A   +
Sbjct: 168 NLLKGLCDENRSQEALELLHMMA---DDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM  RG+    + +   I   C+   + + + +L+ + K  N ++   +    I+HG+C
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK--NGVMPDCMTYNSILHGYC 282

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              + +EA   L ++R    +P+ + Y  +       G   E   +     K G+ P   
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 342

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
            YR  + G   +  + E   L +++V      D  V N LI + +  +    A++ F+ M
Sbjct: 343 TYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P +     +   LCK    D+ +  ++ +       ++  Y  ++  LCT  + 
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  +I EM  +G+  +  F+NS++++ C+E  +  ++KL+D M   G   ++ TYN L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I      G+++ A +L  +M+  GV PD  TY +L+ G C+ + +  A  +F + V+  V
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 173/412 (41%), Gaps = 13/412 (3%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+      G +D        +  +G     I F   +   C + +    +   D V +R 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM---DIVLRRM 154

Query: 220 NSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDEL---RIRECKPDFIAYRIVAEEFK 272
             +  G +  V     ++ G C   R +EA ++L  +   R     PD ++Y  V   F 
Sbjct: 155 TEL--GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G   +      +    G+ P    Y   I  L   + + +A E+   +V      D  
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N+++ G  SS  P+ AI     M   G  P + T S+L   LCK  +S E  +++  +
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           +      D+ +Y  ++    T G L E + ++  M R G+ PD   +N L+ A  +++ +
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  ++ +M   G + N+  Y  +I    + G ++ A+  F  M+++G+ P+   YTSL
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 452

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + GLC       A E+  + ++  + L     ++ + S C+ G  + + KL 
Sbjct: 453 IHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 119/606 (19%), Positives = 245/606 (40%), Gaps = 77/606 (12%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFT--HSPL---------SYHSILKSLSLSRQINAIDSV 106
           P +++++++  GFF        ++  H  L         +Y SI+ +L  ++ ++    V
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L  +  N +  D   Y  I+         ++A       K   + + P +   +SL+  L
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLK--KMRSDGVEPNVVTYSSLMNYL 316

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G    A K+FD M+ RG+E     +   +  +     L ++ ++LD +  R     +
Sbjct: 317 CKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD-LMVRNGIQPD 375

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V  +LI   + K ++V++A  V  ++R     P+ + Y  V +     GSV +  +  
Sbjct: 376 HHVFNILIC-AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF 434

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS- 343
           ++    G+ P    Y   I GL    +  +A+EL   ++     ++    N++I S    
Sbjct: 435 EQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKE 494

Query: 344 ---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              I+       F+ M+  G  P + T + L    C   K DE  ++   + +     D+
Sbjct: 495 GRVIESEK---LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y  +++  C   R+ +A  + +EM   G+ P++  YN +++          AK+L+  
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML----------------------- 497
           +  SG    L TYNI++    +    + ALR+F N+                        
Sbjct: 612 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 498 ------------EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
                         G+ PD  TY+ + E L ++ +L+   ++F     +       +L++
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNS 731

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
            +  L +RG              D+  + +++ ++    D +   +      ++ ESSP 
Sbjct: 732 IVRKLLQRG--------------DITRAGTYLFMI----DEKHFSLEASTASFLLESSPI 773

Query: 606 MLQEIS 611
           + ++IS
Sbjct: 774 VWEQIS 779



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           LN  +  V+   P +A+  +N M   G     PT+ T + L    C+  + D        
Sbjct: 58  LNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGN 117

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYG-VIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +    +  D  ++  ++  LC   R  +A   V++ M   G  PDV  YN+L++  C E+
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177

Query: 450 LLRPAKKLWDQMF---ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             + A +L   M      G   ++ +YN +++ F + G+ + A   +H ML++G+ PD  
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY+S++  LC+   +  A EV N  V + VM      ++ +   C  G    A   L+ +
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 567 SSD 569
            SD
Sbjct: 298 RSD 300



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 356 MIEKGRVPTLSTLSNLSKNLC-KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +++KG      T + L K LC  +  SD +  V + ++      D+ SYN ++  LC   
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177

Query: 415 RLREAYGVIQEM---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           R +EA  ++  M   +  G  PDV  YN+++    +E     A   + +M   G   ++ 
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ +I+   +   ++ A+ + + M++ GV PD  TY S+L G C     + A     K 
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
            +  V       S+ M  LC+ G    A K+      RGL  D+ 
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 342


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 191/436 (43%), Gaps = 47/436 (10%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
            ++ SL Q     +A ++F  ++       P +   N L+        +D AL++F EM 
Sbjct: 43  LLLASLCQAGTMDQAMAIFRGIQ-----CSPSVITLNILINGFCELQLLDKALELFHEME 97

Query: 182 HR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKG 239
               +      +   I  +C+  +L Q   +L+E     +S  +  VIA+  +  GFCK 
Sbjct: 98  KNFALVPEATTYTAIIKCYCKMDRLDQARQLLEE-----SSCCSSDVIAITSVARGFCKA 152

Query: 240 KRVEEAFKVL-DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           +RV+EA+++L D +  +  KPD +A+ ++   F   G V E   +L+    +G  P    
Sbjct: 153 QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           Y   I G      + EA +L +V+                   SS D  +          
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVL-------------------SSRDHHAE--------- 244

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
               P + T + L   LCK ++ +   E+ K + A D   D  +Y  ++  LC  GR  E
Sbjct: 245 ----PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
              V +EM R+G +P V  Y +L+ A C+   L+ A+++   M A G   ++ TY +L+ 
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLE 360

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              E G++  A   F  +L +   P A  Y++L+ G C+   +  A + + + ++  +  
Sbjct: 361 GLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAP 420

Query: 539 ARSILSTFMISLCRRG 554
             +     +  LC+RG
Sbjct: 421 DPATCKLLVEMLCKRG 436



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 158/415 (38%), Gaps = 84/415 (20%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEV 215
           N LLA L   G +D A+ +F     RG++ S   I   + I  FCE   L + L +  E+
Sbjct: 42  NLLLASLCQAGTMDQAMAIF-----RGIQCSPSVITLNILINGFCELQLLDKALELFHEM 96

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            K   +++  +     II  +CK  R+++A ++L+E     C  D IA   VA       
Sbjct: 97  EK-NFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSC--CSSDVIAITSVA------- 146

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                                             R  C+A+ +            D+   
Sbjct: 147 ----------------------------------RGFCKAQRV------------DEAYQ 160

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            L+  V     +  IV +N +I                  CK  +  E  E+ + L +  
Sbjct: 161 LLLDMVEKKSAKPDIVAWNVIIH---------------GFCKAGRVREAYEMLETLVSMG 205

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRP 453
              +  +Y  ++   C SG L EA  + + +  +    +P+V  +N+L+   C+ D L  
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L  QM A     +  TY  L+    + G      R+F  ML +G  P   TYT+L+ 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVH 325

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT----KLLR 564
             C+  +LQ A +V    V   +    +  +  +  L   G    AT    K+LR
Sbjct: 326 AHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILR 380



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 180/422 (42%), Gaps = 52/422 (12%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F V I   C+  +LG+ +   +++ +R + + N   I  L++   C+   +++A  +   
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLER-HCVPNLRDIN-LLLASLCQAGTMDQAMAIF-- 61

Query: 252 LRIRECKPDFIAYRIVAE---EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            R  +C P  I   I+     E +L+    E  +  + ++   + P    Y   I     
Sbjct: 62  -RGIQCSPSVITLNILINGFCELQLLDKALE--LFHEMEKNFALVPEATTYTAIIKCYCK 118

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             R+ +A++L E                   S  S D                   +  +
Sbjct: 119 MDRLDQARQLLEE-----------------SSCCSSD-------------------VIAI 142

Query: 369 SNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           +++++  CK  + DE  ++   ++       D+ ++NV++   C +GR+REAY +++ + 
Sbjct: 143 TSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLV 202

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILISKFSEVGE 485
             G  P+   Y +L++  C+   L  A +L+  + +       N+ T+N LIS   +   
Sbjct: 203 SMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADR 262

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +E A  L   M  + +  D  TYT+L++GLC++        VF + +      +    +T
Sbjct: 263 LEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTT 322

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHI-KWIQES 602
            + + C+ G    A +++R + +     D  ++ +LL+ L +  +V  A E   K ++E 
Sbjct: 323 LVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRER 382

Query: 603 SP 604
            P
Sbjct: 383 CP 384



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 40/276 (14%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T S L   LCK  +  E VE Y  +       ++   N++++ LC +G + +A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 423 IQ--------------------------------EMKRK-GLDPDVSFYNSLMEACCRED 449
            +                                EM++   L P+ + Y ++++  C+ D
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTY 508
            L  A++L ++  +S CS ++     +   F +   ++ A +L  +M+EK  A PD   +
Sbjct: 121 RLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAW 178

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             ++ G C+   ++ A+E+    V+   +      +T +   C+ G+   A +L + LSS
Sbjct: 179 NVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSS 238

Query: 569 DLGHSDSHVI----LLKSLADAREVEMAIEHIKWIQ 600
              H++ +V+    L+  L  A  +E A E +K ++
Sbjct: 239 RDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     +++++++  L  + ++     ++KQ+K   +  D+  Y  ++  L +   T 
Sbjct: 244 EPNV----VTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +   VF E+    E   P +    +L+      G + +A ++   M  +G+      + V
Sbjct: 300 EVSRVFEEMLR--EGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTV 357

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +    EN K+       +++ +        +V+   ++ G CK   V+EA K   E+  
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPC--AVVYSALVRGCCKAALVDEAVKYYVEMLD 415

Query: 255 RECKPDFIAYRIVAE 269
           R   PD    +++ E
Sbjct: 416 RRLAPDPATCKLLVE 430


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 171/380 (45%), Gaps = 38/380 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++   +S G I+ A ++ D M  +G+E  +  +G  I   C+  +L +   + D++  
Sbjct: 288 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV- 346

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  +V    +I G+C    +E AF   DE+  +   P    Y ++     + G +
Sbjct: 347 -EIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 405

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + ++K+ RK G+ P    Y                                   N L
Sbjct: 406 GEADDMIKEMRKKGIIPDAITY-----------------------------------NIL 430

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S   + + A    N M+ KG  PT  T ++L   L +RN+  E  ++++ +     
Sbjct: 431 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 490

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  +N MV   C +G +  A+ +++EM RK + PD   +N+LM+  CRE  +  A+ 
Sbjct: 491 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 550

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G   +  +YN LIS +   G+I+ A R+   ML  G  P   TY +L++ LC
Sbjct: 551 LLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 610

Query: 517 QETNLQAAFEVFNKSVNHDV 536
           +      A E+  + VN  +
Sbjct: 611 KNQEGDLAEELLKEMVNKGI 630



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 173/373 (46%), Gaps = 9/373 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++++  CK  ++++A + +  +     KP+ ++Y  +   +   G++     +L   R  
Sbjct: 254 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 313

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P +  Y   I G+  E R+ EA  L + +V      +    N LI G  +  D   A
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
             + + M++KG +P++ST + L   L    +  E  ++ K +       D  +YN++++ 
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G  ++A+ +  EM  KG++P    Y SL+    R + ++ A  L++++   G S +
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  +N ++      G +E A  L   M  K V PD  T+ +L++G C+E  ++ A  + +
Sbjct: 494 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 553

Query: 530 KSVNHDVMLARSILSTFMISLCRRGH----FLVATKLLR-GLSSDLGHSDSHVILLKSLA 584
           +     +       +T +    RRG     F V  ++L  G +  L    ++  L+K L 
Sbjct: 554 EMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLL---TYNALIKCLC 610

Query: 585 DAREVEMAIEHIK 597
             +E ++A E +K
Sbjct: 611 KNQEGDLAEELLK 623



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 22/293 (7%)

Query: 294 PRTNDYREFILGLIVERRICEAK---ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           P   D + + L +++  R+   K   +L + ++  +   + ++ + L  S   +  +S+I
Sbjct: 121 PHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSI 180

Query: 351 VF-------------------FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           VF                   F  M EKG VP + T +++     K N+ +    +Y  +
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                 + + ++N+MV+ LC  G+L++A   I  M+  G  P+V  YN+++        +
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+++ D M   G   +  TY  LIS   + G +E A  LF  M+E G+ P+A TY +L
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 360

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           ++G C + +L+ AF   ++ V   +M + S  +  + +L   G    A  +++
Sbjct: 361 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/449 (21%), Positives = 175/449 (38%), Gaps = 77/449 (17%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +GF      +PN     +SY++I+   S    I     +L  ++V  I  DS  Y     
Sbjct: 272 IGFMEGLGFKPNV----VSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY----- 322

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
                                          SL++ +  +G ++ A  +FD+M   G+  
Sbjct: 323 ------------------------------GSLISGMCKEGRLEEASGLFDKMVEIGLVP 352

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           + + +   I  +C    L +  S  DE+ K+   ++       L++H      R+ EA  
Sbjct: 353 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKK--GIMPSVSTYNLLVHALFMEGRMGEADD 410

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           ++ E+R +   PD I Y I+   +   G+  +   +  +    G+ P    Y   I  L 
Sbjct: 411 MIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 470

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
              R+ EA +L E I+    + D  + NA++ G  ++ +   A +    M  K   P   
Sbjct: 471 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEV 530

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L +  C+  K +E   +   +       D  SYN ++S     G +++A+ V  EM
Sbjct: 531 TFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 590

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              G +P +  YN+L++  C+      A++L  +M                         
Sbjct: 591 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM------------------------- 625

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGL 515
                     + KG++PD +TY SL+EG+
Sbjct: 626 ----------VNKGISPDDSTYLSLIEGM 644



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAIDSV 106
           P  +T+++L  G+ N    +  F++           S  +Y+ ++ +L +  ++   D +
Sbjct: 352 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 411

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +K+++   I  D+  Y  +I    +  N +KAF + NE+     +       SL+ VL+ 
Sbjct: 412 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              +  A  +F+++  +GV    I F   +   C N  + +   +L E+ ++  S+    
Sbjct: 472 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRK--SVPPDE 529

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V    ++ G C+  +VEEA  +LDE++ R  KPD I+Y  +   +   G + +   V  +
Sbjct: 530 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 589

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
              +G  P    Y   I  L   +    A+EL + +V+   + DD    +LI  + ++D
Sbjct: 590 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVD 648


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 127/570 (22%), Positives = 234/570 (41%), Gaps = 46/570 (8%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LA  +F   +    F H+ L+Y  +++ L     ++ +  +L+Q+K+  I+    ++  +
Sbjct: 61  LASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINV 120

Query: 126 IPSLIQGKNTQKAFSVFNEVK-FNCEDI------------------------------GP 154
           I +  +    ++A  +F  ++ F C+                                G 
Sbjct: 121 INTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGK 180

Query: 155 E----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           E      N LL  L  +  +D A K+  EMS++G E   + +   I      +KLG+V  
Sbjct: 181 EPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSM---SKLGKV-- 235

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
             +E R+          +   +I+GFC+  +V+E F +L ++  +   P+ I Y  V   
Sbjct: 236 --EEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISS 293

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
              +G+V     V  K    G +P    +   + G  +  R+ EA  +   +    F  +
Sbjct: 294 LSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPN 353

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               N LI  + S       V  +  +E+ G  P +ST   L     K        E++ 
Sbjct: 354 VVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWN 413

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +  N    ++  Y  MV+ LC S    +A+ +I++M      P+   +N+ ++  C   
Sbjct: 414 KMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSG 473

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A  L+ QM   GCS N+KTYN ++    +   I+ AL L   M EKG+  +  TY 
Sbjct: 474 RVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYN 533

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           ++  G C     + A ++  K +   V       +T   + C +G    A +LL  LS+ 
Sbjct: 534 TIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAG 593

Query: 570 ---LGHSDSHVILLKSLADAREVEMAIEHI 596
              +    ++  LL  + +   VE A+ ++
Sbjct: 594 GKWVPEVAAYTSLLWGICNQIGVEEAVLYL 623



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + +++++ +K L  S ++    ++  Q++    + +   Y  ++  L++    ++A
Sbjct: 454 NCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEA 513

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
             +  E++    ++     N++     + G  + ALK+  +M   GV+   I +    + 
Sbjct: 514 LELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYA 573

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           +C   K+   + +LD++      +   +    L + G C    VEEA   LD++
Sbjct: 574 YCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSL-LWGICNQIGVEEAVLYLDKM 626


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 216/500 (43%), Gaps = 6/500 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  FN   +Q N T   + +  IL SL  S+  + + S+ ++++   I  +   +  +I
Sbjct: 54  AVSLFNCLLRQ-NPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILI 112

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
               Q      AFSV  ++     +      N+ +      G I  AL   D++   G  
Sbjct: 113 NCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFH 172

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEA 245
              + +G  I   C   K+G+  + L+ +R+ +  ++   V+    II   CK K V +A
Sbjct: 173 LDQVSYGTLINGLC---KVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
           F +  E+  R    + + Y  +   F ++G + +   +  K     + P    +   +  
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPT 364
              E R+ EAK    +++      D    N+L+     ++  + A    N M  +G   T
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT 349

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + + + +    CK    D+ ++++K +     F ++ +YN ++  LC SGR+  A  +I 
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            M  +G  PD+  Y+S+++A C+  L+  A  L  ++   G   N+ TY ILI    + G
Sbjct: 410 LMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGG 469

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            +E A  +F ++L KG      TYT +++G C       A  + +K  ++  +       
Sbjct: 470 RLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYE 529

Query: 545 TFMISLCRRGHFLVATKLLR 564
             + SL  +     A KLLR
Sbjct: 530 IIICSLFDKDENDKAEKLLR 549



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 187/428 (43%), Gaps = 5/428 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++ ++ +K   L  QI+   +   ++      LD   Y  +I  L +   T+ A  +   
Sbjct: 141 ITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRR 200

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           V      +   + ++++  +  D  +++A  ++ EM  R +  + + +   I  FC   K
Sbjct: 201 VDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGK 260

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           L   + + +++   EN  IN  V    +++  FCK  RV+EA   L  +  +  KPD + 
Sbjct: 261 LKDAIGLFNKMTS-EN--INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVT 317

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + + L+  V   + +L      GV      Y   I G    + + +A +L + + 
Sbjct: 318 YNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMH 377

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
             +   +    N+LI G   S     A+   + M ++G+ P + T S++   LCK +  D
Sbjct: 378 HKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVD 437

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + + +   L       +M +Y +++  LC  GRL +A  + +++  KG +  V+ Y  ++
Sbjct: 438 KAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMI 497

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  C   L   A  L  +M  + C  +  TY I+I    +  E + A +L   M+ +G+ 
Sbjct: 498 QGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLL 557

Query: 503 PDATTYTS 510
                Y S
Sbjct: 558 YSFLEYGS 565



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 103/225 (45%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A+  FN ++ +   P       +  +L K      ++ +++ +       +  ++N
Sbjct: 50  DVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFN 109

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           ++++  C  G +  A+ V+ ++ + G +PD    N+ ++  C +  +  A    D++ A 
Sbjct: 110 ILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVAL 169

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +  +Y  LI+   +VGE   AL L   +  K V  D   Y+++++ +C++ N+  A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           F+++++ V+  +       S  +   C  G    A  L   ++S+
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSE 274



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 53/391 (13%)

Query: 150 EDIGPEIC--NSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           + I P+I   NSL+     DGY     ++ A  + + MSHRGV  +   + + I  FC+ 
Sbjct: 309 QGIKPDIVTYNSLM-----DGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKI 363

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             + Q + +  E+  ++   I  +VI    +I G CK  R+  A +++D +  R  +PD 
Sbjct: 364 KMVDQAMKLFKEMHHKQ---IFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDI 420

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  + +       V +   +L K +  G+ P    Y   I GL    R+ +A+ + E 
Sbjct: 421 ITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFED 480

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++   + +  +    +I G  S      A+   + M +   +P   T   +  +L  +++
Sbjct: 481 LLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDE 540

Query: 381 SDELVEVYK-VLSANDYFTDMESYNVMVSFL-------------CTSGR---------LR 417
           +D+  ++ + +++    ++ +E  +  +SF+             CTS +         L 
Sbjct: 541 NDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLE 600

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
             Y      K    D DV   + ++ + C           W +    G   ++ TY ++I
Sbjct: 601 RIYCDCVLTKSNMRDKDVECPSVIIYSTCD----------WSK---QGYILDVNTYTVMI 647

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             F   G  + +L L   M   G  PDA TY
Sbjct: 648 QGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           +++    PD+ F   ++ +  +         L+ +M   G   N   +NILI+ F ++G 
Sbjct: 62  LRQNPTPPDMEF-GQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGL 120

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           I  A  +   +L+ G  PD  T  + ++G C +  +  A    +K V     L +    T
Sbjct: 121 IPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGT 180

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            +  LC+ G    A +LLR +   L   D  V++  ++ D+
Sbjct: 181 LINGLCKVGETRAALELLRRVDGKLVQLD--VVMYSTIIDS 219


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 171/380 (45%), Gaps = 38/380 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++   +S G I+ A ++ D M  +G+E  +  +G  I   C+  +L +   + D++  
Sbjct: 266 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV- 324

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  +V    +I G+C    +E AF   DE+  +   P    Y ++     + G +
Sbjct: 325 -EIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 383

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + ++K+ RK G+ P    Y                                   N L
Sbjct: 384 GEADDMIKEMRKKGIIPDAITY-----------------------------------NIL 408

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S   + + A    N M+ KG  PT  T ++L   L +RN+  E  ++++ +     
Sbjct: 409 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 468

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  +N MV   C +G +  A+ +++EM RK + PD   +N+LM+  CRE  +  A+ 
Sbjct: 469 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 528

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G   +  +YN LIS +   G+I+ A R+   ML  G  P   TY +L++ LC
Sbjct: 529 LLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 588

Query: 517 QETNLQAAFEVFNKSVNHDV 536
           +      A E+  + VN  +
Sbjct: 589 KNQEGDLAEELLKEMVNKGI 608



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 173/373 (46%), Gaps = 9/373 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++++  CK  ++++A + +  +     KP+ ++Y  +   +   G++     +L   R  
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P +  Y   I G+  E R+ EA  L + +V      +    N LI G  +  D   A
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
             + + M++KG +P++ST + L   L    +  E  ++ K +       D  +YN++++ 
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G  ++A+ +  EM  KG++P    Y SL+    R + ++ A  L++++   G S +
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  +N ++      G +E A  L   M  K V PD  T+ +L++G C+E  ++ A  + +
Sbjct: 472 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 531

Query: 530 KSVNHDVMLARSILSTFMISLCRRGH----FLVATKLLR-GLSSDLGHSDSHVILLKSLA 584
           +     +       +T +    RRG     F V  ++L  G +  L    ++  L+K L 
Sbjct: 532 EMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLL---TYNALIKCLC 588

Query: 585 DAREVEMAIEHIK 597
             +E ++A E +K
Sbjct: 589 KNQEGDLAEELLK 601



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 22/293 (7%)

Query: 294 PRTNDYREFILGLIVERRICEAK---ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           P   D + + L +++  R+   K   +L + ++  +   + ++ + L  S   +  +S+I
Sbjct: 99  PHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSI 158

Query: 351 VF-------------------FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           VF                   F  M EKG VP + T +++     K N+ +    +Y  +
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                 + + ++N+MV+ LC  G+L++A   I  M+  G  P+V  YN+++        +
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+++ D M   G   +  TY  LIS   + G +E A  LF  M+E G+ P+A TY +L
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 338

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           ++G C + +L+ AF   ++ V   +M + S  +  + +L   G    A  +++
Sbjct: 339 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 167/417 (40%), Gaps = 42/417 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +GF      +PN     +SY++I+   S    I     +L  ++V  I  DS  Y     
Sbjct: 250 IGFMEGLGFKPNV----VSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY----- 300

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
                                          SL++ +  +G ++ A  +FD+M   G+  
Sbjct: 301 ------------------------------GSLISGMCKEGRLEEASGLFDKMVEIGLVP 330

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           + + +   I  +C    L +  S  DE+ K+   ++       L++H      R+ EA  
Sbjct: 331 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKK--GIMPSVSTYNLLVHALFMEGRMGEADD 388

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           ++ E+R +   PD I Y I+   +   G+  +   +  +    G+ P    Y   I  L 
Sbjct: 389 MIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 448

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
              R+ EA +L E I+    + D  + NA++ G  ++ +   A +    M  K   P   
Sbjct: 449 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEV 508

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L +  C+  K +E   +   +       D  SYN ++S     G +++A+ V  EM
Sbjct: 509 TFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 568

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              G +P +  YN+L++  C+      A++L  +M   G S +  TY  LI     V
Sbjct: 569 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 625



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAIDSV 106
           P  +T+++L  G+ N    +  F++           S  +Y+ ++ +L +  ++   D +
Sbjct: 330 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 389

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +K+++   I  D+  Y  +I    +  N +KAF + NE+     +       SL+ VL+ 
Sbjct: 390 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              +  A  +F+++  +GV    I F   +   C N  + +   +L E+ ++  S+    
Sbjct: 450 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRK--SVPPDE 507

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V    ++ G C+  +VEEA  +LDE++ R  KPD I+Y  +   +   G + +   V  +
Sbjct: 508 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 567

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
              +G  P    Y   I  L   +    A+EL + +V+   + DD    +LI  + ++D
Sbjct: 568 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVD 626


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 191/436 (43%), Gaps = 47/436 (10%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
            ++ SL Q     +A ++F  ++       P +   N L+        +D AL++F EM 
Sbjct: 43  LLLASLCQAGKMDQAMAIFRGIQ-----CSPSVITLNILINGFCELQLLDKALELFHEME 97

Query: 182 HR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKG 239
               +      +   I  +C+  +L Q   +L+E     +S  +  VIA+  +  GFCK 
Sbjct: 98  KNFALVPEATTYTAIIKCYCKMDRLDQARQLLEE-----SSCCSSDVIAITSVARGFCKA 152

Query: 240 KRVEEAFKVL-DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           +RV+EA+++L D +  +  KPD +A+ ++   F   G V E   +L+    +G  P    
Sbjct: 153 QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           Y   I G      + EA +L +V+                   SS D  +          
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVL-------------------SSRDHHAE--------- 244

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
               P + T + L   LCK ++ +   E+ K + A D   D  +Y  ++  LC  GR  E
Sbjct: 245 ----PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
              V +EM R+G +P V  Y +L+ A C+   L+ A+++   M A G   ++ TY +L+ 
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLE 360

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              E G++  A   F  +L +   P A  Y++L+ G C+   +  A + + + ++  +  
Sbjct: 361 GLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAP 420

Query: 539 ARSILSTFMISLCRRG 554
             +     +  LC+RG
Sbjct: 421 DPATCKLLVEMLCKRG 436



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 158/415 (38%), Gaps = 84/415 (20%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEV 215
           N LLA L   G +D A+ +F     RG++ S   I   + I  FCE   L + L +  E+
Sbjct: 42  NLLLASLCQAGKMDQAMAIF-----RGIQCSPSVITLNILINGFCELQLLDKALELFHEM 96

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            K   +++  +     II  +CK  R+++A ++L+E     C  D IA   VA       
Sbjct: 97  EK-NFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSC--CSSDVIAITSVA------- 146

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                                             R  C+A+ +            D+   
Sbjct: 147 ----------------------------------RGFCKAQRV------------DEAYQ 160

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            L+  V     +  IV +N +I                  CK  +  E  E+ + L +  
Sbjct: 161 LLLDMVEKKSAKPDIVAWNVIIH---------------GFCKAGRVREAYEMLETLVSMG 205

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRP 453
              +  +Y  ++   C SG L EA  + + +  +    +P+V  +N+L+   C+ D L  
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L  QM A     +  TY  L+    + G      R+F  ML +G  P   TYT+L+ 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVH 325

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT----KLLR 564
             C+  +LQ A +V    V   +    +  +  +  L   G    AT    K+LR
Sbjct: 326 AHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILR 380



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 181/422 (42%), Gaps = 52/422 (12%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F V I   C+  +LG+ +   +++ +R + + N   I  L++   C+  ++++A  +   
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLER-HCVPNLRDIN-LLLASLCQAGKMDQAMAIF-- 61

Query: 252 LRIRECKPDFIAYRIVAE---EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            R  +C P  I   I+     E +L+    E  +  + ++   + P    Y   I     
Sbjct: 62  -RGIQCSPSVITLNILINGFCELQLLDKALE--LFHEMEKNFALVPEATTYTAIIKCYCK 118

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             R+ +A++L E                   S  S D                   +  +
Sbjct: 119 MDRLDQARQLLEE-----------------SSCCSSD-------------------VIAI 142

Query: 369 SNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           +++++  CK  + DE  ++   ++       D+ ++NV++   C +GR+REAY +++ + 
Sbjct: 143 TSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLV 202

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILISKFSEVGE 485
             G  P+   Y +L++  C+   L  A +L+  + +       N+ T+N LIS   +   
Sbjct: 203 SMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADR 262

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +E A  L   M  + +  D  TYT+L++GLC++        VF + +      +    +T
Sbjct: 263 LEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTT 322

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHI-KWIQES 602
            + + C+ G    A +++R + +     D  ++ +LL+ L +  +V  A E   K ++E 
Sbjct: 323 LVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRER 382

Query: 603 SP 604
            P
Sbjct: 383 CP 384



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 122/276 (44%), Gaps = 40/276 (14%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T S L   LCK  +  E VE Y  +       ++   N++++ LC +G++ +A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 423 IQ--------------------------------EMKRK-GLDPDVSFYNSLMEACCRED 449
            +                                EM++   L P+ + Y ++++  C+ D
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTY 508
            L  A++L ++  +S CS ++     +   F +   ++ A +L  +M+EK  A PD   +
Sbjct: 121 RLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAW 178

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             ++ G C+   ++ A+E+    V+   +      +T +   C+ G+   A +L + LSS
Sbjct: 179 NVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSS 238

Query: 569 DLGHSDSHVI----LLKSLADAREVEMAIEHIKWIQ 600
              H++ +V+    L+  L  A  +E A E +K ++
Sbjct: 239 RDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     +++++++  L  + ++     ++KQ+K   +  D+  Y  ++  L +   T 
Sbjct: 244 EPNV----VTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +   VF E+    E   P +    +L+      G + +A ++   M  +G+      + V
Sbjct: 300 EVSRVFEEMLR--EGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTV 357

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +    EN K+       +++ +        +V+   ++ G CK   V+EA K   E+  
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPC--AVVYSALVRGCCKAALVDEAVKYYVEMLD 415

Query: 255 RECKPDFIAYRIVAE 269
           R   PD    +++ E
Sbjct: 416 RRLAPDPATCKLLVE 430


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 126/533 (23%), Positives = 228/533 (42%), Gaps = 54/533 (10%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQV--KVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           + ++Y +++  L  + +++   ++L+Q+  K N  TL +  Y  +I  L +    ++A  
Sbjct: 110 TTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKT--YTVVIDGLSKAGRVEEARR 167

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH----RGVEFSTIGFGVFI 196
           +F ++  N       +  +L++ LA  G +D AL   ++M      RGVE   +   + I
Sbjct: 168 IFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVI 227

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
            + C +  L   L+  DE+   ++S+         ++   CK +R EEA   + ++  R 
Sbjct: 228 RQLCASGNLEDALAYFDEL---DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERR 284

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P    Y  + + F  +G + E  + LK+  + G  P    Y   I GL    R+ E  
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 344

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E                                   F+ M  +G  P   T + L     
Sbjct: 345 ER----------------------------------FHEMRNRGYEPDAVTYAALIDGFM 370

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K     +   VY+ +  +       +YN+++  LC +GR+ EAY     M+ +G    V 
Sbjct: 371 KAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVV 430

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y++LM+  C E  +  A +L+ +M   GC  NL +YNI+I      G++  A   F  +
Sbjct: 431 TYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKL 490

Query: 497 LEKGVAPDATTYTSLLEGLCQETN-LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           L++ + PD  T+ S L GLCQ  + +    E+F   V+          S  M  +CR G 
Sbjct: 491 LQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGG 550

Query: 556 FLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
             V  ++      RG++ D+   ++   L++ L  A  V+ A+E  + ++  S
Sbjct: 551 LEVTLEIFHEMVSRGVAPDVVVFNT---LIRWLCIAGRVDEALEVFRELERRS 600



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 208/469 (44%), Gaps = 25/469 (5%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           D   +  +I  L + K   +AFSV    V+  CE   P+    N  +  L     +D+A 
Sbjct: 40  DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCE---PDYVTYNVFIDGLCKAERVDDAF 96

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++  +M  +    +T+ +   +    +  +L + +++L+++ ++ NS    +    ++I 
Sbjct: 97  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTY--TVVID 154

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G  K  RVEEA ++  ++    C+PD   Y  +      +G + E  V L +  + G A 
Sbjct: 155 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCAR 214

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-------NALIGSVSSID-P 346
                 + ++  +V R++C +  L + +    F   DD L       N L+ ++   +  
Sbjct: 215 GVEP--DVVIHNLVIRQLCASGNLEDAL--AYFDELDDSLDLTHFTFNPLVAALCKAERT 270

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             AI F   M E+   PTL T ++L     K  + DE +   K      +  D  +Y  +
Sbjct: 271 EEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSI 330

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  GR+ E      EM+ +G +PD   Y +L++   +  ++  A +++ QM  SG 
Sbjct: 331 IDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGT 390

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TYNI++    + G +  A   F  M E+G      TY++L++G C E N+ AA E
Sbjct: 391 VVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVE 450

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRG-----HFLVATKLLRGLSSDL 570
           +F + ++          +  +  LCR G     +F     L R L  D+
Sbjct: 451 LFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV 499



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 15/317 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            S++  L   G ++   + F EM +RG E   + +   I  F +         M+ +  +
Sbjct: 328 TSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKA-------KMIPKAHR 380

Query: 218 RENSMI-NGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               M+ +G+V++     +I+ G CK  RV EA+     +  R C    + Y  + + F 
Sbjct: 381 VYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFC 440

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G+V     + ++    G  P    Y   I GL    ++ +A    E ++  +   D  
Sbjct: 441 SEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVY 500

Query: 333 VLNALI-GSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             N+ + G    +D     +  F  M+ +G  P L + S L   +C+    +  +E++  
Sbjct: 501 TFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHE 560

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +     D+  +N ++ +LC +GR+ EA  V +E++R+   PD   Y SL++A  R + 
Sbjct: 561 MVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLLDALSRCER 619

Query: 451 LRPAKKLWDQMFASGCS 467
           +  A+ L   M   GC+
Sbjct: 620 MEEARLLSFHMKLQGCA 636



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 24/238 (10%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI++  V T    + L   LCK  + D  + +   +  +    DM ++ V+++ LC   R
Sbjct: 1   MIDRKLVDT-RVCTALLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKR 56

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA+ V++   R G +PD   YN  ++  C+ + +  A +L  +M    C     TY  
Sbjct: 57  LDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTA 116

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+    + G ++ A+ +   M+EKG +P   TYT +++GL +   ++             
Sbjct: 117 LVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEE------------ 164

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD---AREVE 590
              AR I    + + CR   F V T L+ GL+  +G  D  ++ L  + +   AR VE
Sbjct: 165 ---ARRIFVDMLGNGCRPDAF-VYTALISGLAK-IGKLDEALVYLNQMVENGCARGVE 217


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 133/572 (23%), Positives = 245/572 (42%), Gaps = 49/572 (8%)

Query: 101 NAIDSVLKQVKVNKITL--DSSVYRFIIPSLIQGKNTQKAFSVF----------NEVKFN 148
           N +++ L   K+ +  L  D+  Y  +I    + K    A+ VF          NEV + 
Sbjct: 209 NVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYT 268

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                     +L+  L   G I+ ALK+F +M+      +   + V I+    + +  + 
Sbjct: 269 ----------NLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           L++ +E++++     N     VLI  G CK  +++EA K+L E+  +   P  + Y  + 
Sbjct: 319 LNLFNEMKEK-GCEPNVHTYTVLI-DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           + +   G + +   +L         P T  Y E I GL  +R++ +A  L   ++  K +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 N+LI G     D  SA    + M E G VP   T S     LCK  + +E   +
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTL 496

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  + A     +   Y  ++   C  G++  AY +++ M      P+   YN L+E  C+
Sbjct: 497 FDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCK 556

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  ++ A  L  +M   G    + TY ILI +  + G  + AL++F++M+  G  PD  T
Sbjct: 557 EKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCT 616

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI------------------- 548
           YT+ L     +  L+   +V  K +N + +L   +  T +I                   
Sbjct: 617 YTAFLHAYFSQGMLEEVDDVIAK-MNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675

Query: 549 --SLCRRGHFLVATKLLRGLSSDLGHSDSHV-ILLKSLADAREVEMAIEHIKWIQESSPT 605
             + C+   ++V+  L++ LS +    ++   I + S+++  E E+A++  + + E   T
Sbjct: 676 VDTGCKPSLYIVSI-LIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCT 734

Query: 606 MLQEISAELFASLSSSSYPEPILLLLHALQEK 637
           +   I   L A        E    L+H ++E+
Sbjct: 735 IDVSIYGALIAGFCQQERLEEAQGLVHHMKER 766



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 134/575 (23%), Positives = 245/575 (42%), Gaps = 66/575 (11%)

Query: 24  TRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHS 83
           +RP  +  P L + L       SL+PS V+ +    L      AL FFNW + +P F H+
Sbjct: 49  SRPNWQKHPSLRKLL------PSLTPSHVSSLFAFNL--DPQTALSFFNWIALRPGFKHN 100

Query: 84  PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
             SY S+L  L  +R +     V ++++++           +I S    ++      VF 
Sbjct: 101 VHSYSSMLNILIRARLL----GVAEKIRIS-----------MIKSCCSIEDVLFVLEVFR 145

Query: 144 EVKFNCE-DIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           ++  + E    P + C N++L  L+    ID    ++ E+ +  +  +   F   +  +C
Sbjct: 146 KMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYC 205

Query: 201 ENAKLGQVL-SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K+G V+ + L   +  +  +   +     +I G C+ K V+ A++V   +  + C+ 
Sbjct: 206 ---KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQR 262

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + ++Y  +       G + E   +     +    P    Y   I                
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIY--------------- 307

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                           AL GS   ++   A+  FN M EKG  P + T + L   LCK N
Sbjct: 308 ----------------ALSGSGRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGLCKEN 348

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE  ++   +S       + +YN ++   C  G + +A+ ++  M+     P+   YN
Sbjct: 349 KMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYN 408

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L+   C++  +  A  L ++M     S +L TYN LI    +V ++E A RL   M E 
Sbjct: 409 ELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN 468

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G+ PD  TY+  ++ LC+E  ++ A  +F+      V     I +  +   C+ G   VA
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 560 TKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
             LL  + +D  L +S ++ +L++ L   ++++ A
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/455 (21%), Positives = 198/455 (43%), Gaps = 33/455 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++  L   R+++   ++L ++   K++     Y  +I    +  + + A+ + + +
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             N         +  +  L  +G ++ A  +FD +  +GV+ + + +   I  +C+  K+
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKI 525

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               S+L+  R   ++ +  S    ++I G CK K+++EA  ++ ++     KP  + Y 
Sbjct: 526 DVAYSLLE--RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           I+  E    G+      V      LG  P    Y  F+     +  +   +E+ +VI   
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGML---EEVDDVIAKM 640

Query: 326 KFTIDDDVLNALIGSVSSIDPRS-------AIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
               ++ +L  L+     ID  +       A  F   M++ G  P+L  +S L KNL   
Sbjct: 641 N---EEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697

Query: 379 NKSDEL------------------VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
           N+  E                   +++++ +  +    D+  Y  +++  C   RL EA 
Sbjct: 698 NRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQ 757

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
           G++  MK +G+ P    YNSL++ CC+  +   A +L D M  +G    L++Y +L+   
Sbjct: 758 GLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGL 817

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
              G  E A  +FH +L  G   D   +  L++GL
Sbjct: 818 YIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGL 852



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 218/544 (40%), Gaps = 56/544 (10%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q     + +SY +++  L  + +IN    +   +  +        Y  +I +L       
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +A ++FNE+K    +        L+  L  +  +D A KM  EMS +G+  S + +   I
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             +C+   +     +LD +    NS    +     +I G CK ++V +A  +L+++  R+
Sbjct: 377 DGYCKEGMIDDAFEILDLMES--NSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P  I Y  +      +  +     +L    + G+ P    Y  FI  L  E R+ EA 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 317 ELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIV-------------FFNFMIEK- 359
            L + + +     ++ +  ALI     V  ID   +++              +N +IE  
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 360 -------------------GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                              G  PT+ T + L   + K    D  ++V+  + +  Y  D+
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y   +    + G L E   VI +M  +G+ PD+  Y  L++   R  L   A      
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 461 MFASGCSGNLKTYNILISKFS----------EVG--------EIEGALRLFHNMLEKGVA 502
           M  +GC  +L   +ILI   S          E+G        E E AL+LF  M+E G  
Sbjct: 675 MVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCT 734

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            D + Y +L+ G CQ+  L+ A  + +      +  +  I ++ +   C+ G +  A +L
Sbjct: 735 IDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRL 794

Query: 563 LRGL 566
           +  +
Sbjct: 795 VDAM 798


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 128/559 (22%), Positives = 241/559 (43%), Gaps = 51/559 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L LR  +   LV  V+   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 39  KWGPDAEKALEVLMLR--VDHWLVREVMKTDVGV--NVKMQFFRWAAKRRNYEHDTSTYM 94

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++  L +  Q   +  +++++  N I  +  +    ++  L   K  ++A ++F ++K 
Sbjct: 95  ALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKT 154

Query: 148 -NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKL 205
             C+ I  +  NS++ +L  +G  +   ++++EMS  G  F  T+ +   I  FC+  + 
Sbjct: 155 RKCQPIA-QAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRR 213

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              + +L+E++  E  M   + I  ++I  F K      A  + +E+R + C+PD   Y 
Sbjct: 214 DSAIQLLNEMK--EIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 271

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +       G + E      + ++ G  P T      I  L    R+ +A +L + + + 
Sbjct: 272 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 331

Query: 326 KFTIDDDVLNALIGSV-------------------SSIDPRS------------------ 348
           +        N +I ++                   S I P S                  
Sbjct: 332 RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEK 391

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A++    M EKG  P  +   +L   L K  + D   E+++ L  N   +    Y VM+ 
Sbjct: 392 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 451

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L  +GRL +A  +  EM + G  PDV  YN+LM    R  +L  A     +M   GC  
Sbjct: 452 HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP 511

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ +YNI+++  ++ G    A+ +  NM +  V PD  +Y ++L  L      + A ++ 
Sbjct: 512 DINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLM 571

Query: 529 NK----SVNHDVMLARSIL 543
            +       +D++   SIL
Sbjct: 572 KEMNTLGFEYDLITYSSIL 590



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 155/355 (43%), Gaps = 20/355 (5%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           S+ ++++      D   Y  +I  L +     +A+  F E++   E   P+    N+++ 
Sbjct: 253 SLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR--EGCRPDTVFMNNMIN 310

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-AKLGQVLSMLDEVRKRENS 221
            L   G +D+A+K+F EM       S + +   I    E+ ++  +V S  +  R +E+ 
Sbjct: 311 FLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFE--RMKESG 368

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMG 275
           +   S    ++I GFCK  R+E+A  +L+E+  +   P   AY  +      A+ + L  
Sbjct: 369 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 428

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +F+     + K   G +     Y   I  L    R+ +A  + + +       D    N
Sbjct: 429 ELFQ-----ELKENCG-SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 482

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           AL+  ++       A+     M E G +P +++ + +   L K       +E+   +  +
Sbjct: 483 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 542

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
               D+ SYN ++  L  +G   EA  +++EM   G + D+  Y+S++EA  + D
Sbjct: 543 TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVD 597



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 5/265 (1%)

Query: 83  SPLSYHSILKSLSLSR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S ++Y++I+K+L  S+ + + + S  +++K + I+  S  Y  +I    +    +KA  +
Sbjct: 336 SVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMML 395

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             E+        P    SL+  L      D A ++F E+       S   + V I    +
Sbjct: 396 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGK 455

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             +L   ++M DE+ K   +     V A   ++ G  +   ++EA   +  ++   C PD
Sbjct: 456 AGRLDDAINMFDEMNKLGCA---PDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 512

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             +Y I+       G       +L   ++  V P    Y   +  L       EA +L +
Sbjct: 513 INSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMK 572

Query: 321 VIVSGKFTIDDDVLNALIGSVSSID 345
            + +  F  D    ++++ ++  +D
Sbjct: 573 EMNTLGFEYDLITYSSILEAIGKVD 597


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 224/507 (44%), Gaps = 30/507 (5%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           ++P ++T ++L  G           N   Q    T  P  +++ +++  L    +I    
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
           ++L ++  + +      Y  I+  + +  +T  A ++  +++     I P   I ++++ 
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIID 263

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  DG   +A  +F EM  +G+      +   I  FC + +      +L E+ +R+   
Sbjct: 264 SLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK--- 320

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           I+  V+    +I+ F K  +  EA ++ DE+  R   P+ I Y  + + F     +   E
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            +       G +P    +   I G    +RI +  EL   +       D    N LI   
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 342 SSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA------- 393
             + D  +A+     MI  G  P + T   L   LC   K  + +E++KV+         
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 394 ----NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
               N    D+++YN+++S L   G+  EA  + +EM  +G+ PD   Y+S+++  C++ 
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A +++D M +   S N+ T+  LI+ + + G ++  L LF  M  +G+  +A TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +L+ G  +  N+  A ++F + ++  V
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 185/438 (42%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKL--GLHPDVVTFN 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA  +  ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y     G IV+                             G     D  SA+
Sbjct: 214 GLQPTQITY-----GTIVD-----------------------------GMCKKGDTVSAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A++L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ +I  F +   ++ A  +F+ M  KG +P+  T+ +L++G C    +    E+ +
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++   +  +T +      G    A  LL+     GL  D+   D+   LL  L 
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKVMQKS 494



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/479 (20%), Positives = 206/479 (43%), Gaps = 19/479 (3%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           S+ ++++  +I  D   +  +I           A S F   K     + P++   N+LL 
Sbjct: 100 SLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG--KLTKLGLHPDVVTFNTLLH 157

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +  +  AL +F +M       + + F   +   C   ++ + +++LD  R  E+ +
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD--RMMEDGL 215

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGSVFERE 281
               +    I+ G CK      A  +L ++  +    P+ + Y  + +     G   + +
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS- 340
            +  + ++ G+ P    Y   I+G     R  +A++L + ++  K + D    NALI + 
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V       A   ++ M+ +G +P   T S++    CK+N+ D    ++ +++      ++
Sbjct: 336 VKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            ++N ++   C + R+ +   ++ EM   GL  D + YN+L+        L  A  L  +
Sbjct: 396 ITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQE 455

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPDATTYT 509
           M +SG   ++ T + L+    + G+++ AL +F  M +            GV PD  TY 
Sbjct: 456 MISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            L+ GL  E     A E++ +  +  ++      S+ +  LC++     AT++   + S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 51/393 (12%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N+L+     +G    A +++DEM  RG+  +TI +   I  FC+  +L    
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            M   +  +  S     +    +I G+C  KR+++  ++L E+       D   Y  +  
Sbjct: 381 HMFYLMATKGCS--PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F L+G +     +L++    G+ P        + GL    ++ +A E+ +V+   K  +
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 330 D---------DDV--LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           D          DV   N LI G ++      A   +  M  +G VP   T S++   LCK
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +++ DE  +++  + +  +  ++ ++  +++  C +GR+ +   +  EM R+G+      
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI------ 612

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
                                          N  TY  LI  F +VG I GAL +F  M+
Sbjct: 613 -----------------------------VANAITYITLICGFRKVGNINGALDIFQEMI 643

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             GV PD  T  ++L GL  +  L+ A  +  K
Sbjct: 644 SSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 224/507 (44%), Gaps = 30/507 (5%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           ++P ++T ++L  G           N   Q    T  P  +++ +++  L    +I    
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
           ++L ++  + +      Y  I+  + +  +T  A ++  +++     I P   I ++++ 
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIID 263

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  DG   +A  +F EM  +G+      +   I  FC + +      +L E+ +R+   
Sbjct: 264 SLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK--- 320

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           I+  V+    +I+ F K  +  EA ++ DE+  R   P+ I Y  + + F     +   E
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            +       G +P    +   I G    +RI +  EL   +       D    N LI   
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 342 SSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA------- 393
             + D  +A+     MI  G  P + T   L   LC   K  + +E++KV+         
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 394 ----NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
               N    D+++YN+++S L   G+  EA  + +EM  +G+ PD   Y+S+++  C++ 
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A +++D M +   S N+ T+  LI+ + + G ++  L LF  M  +G+  +A TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +L+ G  +  N+  A ++F + ++  V
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 185/438 (42%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKL--GLHPDVVTFN 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA  +  ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y     G IV+                             G     D  SA+
Sbjct: 214 GLQPTQITY-----GTIVD-----------------------------GMCKKGDTVSAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A++L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ +I  F +   ++ A  +F+ M  KG +P+  T+ +L++G C    +    E+ +
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++   +  +T +      G    A  LL+     GL  D+   D+   LL  L 
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKVMQKS 494



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/479 (20%), Positives = 206/479 (43%), Gaps = 19/479 (3%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           S+ ++++  +I  D   +  +I           A S F   K     + P++   N+LL 
Sbjct: 100 SLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG--KITKLGLHPDVVTFNTLLH 157

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +  +  AL +F +M       + + F   +   C   ++ + +++LD  R  E+ +
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD--RMMEDGL 215

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGSVFERE 281
               +    I+ G CK      A  +L ++  +    P+ + Y  + +     G   + +
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS- 340
            +  + ++ G+ P    Y   I+G     R  +A++L + ++  K + D    NALI + 
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V       A   ++ M+ +G +P   T S++    CK+N+ D    ++ +++      ++
Sbjct: 336 VKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            ++N ++   C + R+ +   ++ EM   GL  D + YN+L+        L  A  L  +
Sbjct: 396 ITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQE 455

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPDATTYT 509
           M +SG   ++ T + L+    + G+++ AL +F  M +            GV PD  TY 
Sbjct: 456 MISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            L+ GL  E     A E++ +  +  ++      S+ +  LC++     AT++   + S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 51/393 (12%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N+L+     +G    A +++DEM  RG+  +TI +   I  FC+  +L    
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            M   +  +  S     +    +I G+C  KR+++  ++L E+       D   Y  +  
Sbjct: 381 HMFYLMATKGCS--PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F L+G +     +L++    G+ P        + GL    ++ +A E+ +V+   K  +
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 330 D---------DDV--LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           D          DV   N LI G ++      A   +  M  +G VP   T S++   LCK
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +++ DE  +++  + +  +  ++ ++  +++  C +GR+ +   +  EM R+G+      
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI------ 612

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
                                          N  TY  LI  F +VG I GAL +F  M+
Sbjct: 613 -----------------------------VANAITYITLICGFRKVGNINGALDIFQEMI 643

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             GV PD  T  ++L GL  +  L+ A  +  K
Sbjct: 644 SSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 191/465 (41%), Gaps = 53/465 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N++++ LAS   +D A K F+ M   G E   I F   I  FC+  +      +L++  K
Sbjct: 11  NTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALK 70

Query: 218 RENSMINGSVIAVLIIHGFCKG--------------------------------KRVEEA 245
           R    +    +   +IHG+CK                                 KR++EA
Sbjct: 71  RFRPDV---FLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEA 127

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            ++ +EL+   C P+ +AY  V +     G + +     ++       P    Y   I G
Sbjct: 128 CELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDG 187

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPT 364
           L   + + +A ++ E +V      D      LI   S       A    + M+ KG  PT
Sbjct: 188 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 247

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T  ++    CK +  +E  EV   +        +  +  ++S+  + GR  EAY V+ 
Sbjct: 248 AVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLT 307

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM  +G  PDV  Y SL++       +  A+ ++D M   GC+ +  TY  +I  FS++G
Sbjct: 308 EMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIG 367

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            +E A  +   M + GV PD   Y SL++G  +   +  AF V+++ V   +   +    
Sbjct: 368 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI---KPNAV 424

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREV 589
           TF +             L+ GL  D G +D    L K + +  EV
Sbjct: 425 TFNV-------------LMHGLFKD-GKTDRAFSLFKEMLEKEEV 455



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 220/525 (41%), Gaps = 51/525 (9%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV 110
           L   VI+ Y      L  G+F   +  P  +   +SY +++K L+ S++I+    + +++
Sbjct: 78  LYTSVIHGYC-KAGDLDTGYFRAVT--PKASLDVISYTTVIKGLADSKRIDEACELFEEL 134

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           K    + +   Y  +I  L++    +     F E+  +           ++  L     +
Sbjct: 135 KTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQML 194

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSV 227
            +A K+F++M  +G    TI +   I  F + +K+ +   +LD +  +     ++  GS 
Sbjct: 195 PDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGS- 253

Query: 228 IAVLIIHGFCK-----------------------------------GKRVEEAFKVLDEL 252
               I+HGFCK                                     R EEA++VL E+
Sbjct: 254 ----IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 309

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R C PD I Y  + +     G V E   V     + G AP    Y   I        +
Sbjct: 310 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 369

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
             A E+ E++       D    N+L+ G V       A   ++ M+  G  P   T + L
Sbjct: 370 EAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 429

Query: 372 SKNLCKRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
              L K  K+D    ++K +L   +    + SY +++  L  +GR+ EA+   QEM  +G
Sbjct: 430 MHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRG 489

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + P+   Y SL+ +  +   +  AKKL + M   G + +++ Y+ LI+   +   ++ A 
Sbjct: 490 IIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 549

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGL---CQETNLQAAFEVFNKSV 532
            +F  M+++G AP+  TY  L  G     +  +L+A  + F++ V
Sbjct: 550 DVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQGV 594



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+S++       +++    V  ++  + I  ++  +  ++  L +   T +AFS+F E
Sbjct: 389 FAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKE 448

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    E++ P + +  + +  L   G +  A   F EM  RG+      +   I+   + 
Sbjct: 449 M-LEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKA 507

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            ++ +   +++++ K     +N  V A   +I G      V+ A+ V  E+  R C P+ 
Sbjct: 508 GRIPEAKKLVEDMVKLG---VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNE 564

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           + Y+++   F+  G   + E V K+    GVA
Sbjct: 565 VTYKVLRRGFRAAGRALDLEAV-KQHFSQGVA 595


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 184/406 (45%), Gaps = 25/406 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A     G +D A ++   M    V      +   I   C+  ++G+ LS+LD++  
Sbjct: 148 NTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 204

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R  + S++  +V+    +   CK     +A +VLDE+R + C P+ + Y ++       G
Sbjct: 205 RGCQPSVVTYTVL----LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 260

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V +    L +    G  P T  Y   + GL   +R  + +EL   ++      ++   +
Sbjct: 261 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320

Query: 336 ALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVY 388
            L+      G V       AI     M   G     +TL N+  N +CK+ + D+  +  
Sbjct: 321 MLVRFFCRGGMVE-----RAIQVLEQMSGHGCAAN-TTLCNIVINTICKQGRVDDAFQFL 374

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     D  SY  ++  LC + R  +A  +++EM RK   P+   +N+ +   C++
Sbjct: 375 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 434

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            L+  A  L +QM   GC  N+ TYN L++ F   G ++ AL LF++M  K   P+  TY
Sbjct: 435 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITY 491

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           T+LL GLC    L AA E+  + +  D        +  +   C++G
Sbjct: 492 TTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG 537



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/518 (22%), Positives = 214/518 (41%), Gaps = 39/518 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I++ L    ++    S+L  +           Y  ++ ++ +     +A  V +E+
Sbjct: 178 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 237

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   +   P I   N ++  +  +G +D+A +  + +S  G +  T+ +   +   C   
Sbjct: 238 RA--KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 295

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +   V  +  E+ ++ N M N  V   +++  FC+G  VE A +VL+++    C  +   
Sbjct: 296 RWEDVEELFAEMMEK-NCMPN-EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             IV       G V +    L      G +P T  Y   + GL    R  +AKEL + +V
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 324 SGKFTIDDDVLNA----------------LIGSVSSIDPRSAIVFFNFMIE----KGRV- 362
                 ++   N                 LI  +S       IV +N ++     +GRV 
Sbjct: 414 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 473

Query: 363 ------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                       P   T + L   LC   + D   E+   +   D   ++ ++NV+VSF 
Sbjct: 474 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 533

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G + EA  ++++M   G  P++  YN+L++   ++     A +L   + ++G S ++
Sbjct: 534 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 593

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ +I   S    +E A+++FH + + G+ P A  Y  +L  LC+  N   A + F  
Sbjct: 594 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 653

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            V++  M       T +  L           LLR L S
Sbjct: 654 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCS 691



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 4/337 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C+  R  +A +VL          D  AY  +   +   G +   +   +    + 
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQL---DAARRLIASMP 171

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAI 350
           VAP    Y   I GL    R+ EA  L + ++             L+ +V  S     A+
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + M  KG  P + T + +   +C+  + D+  E    LS+  +  D  SY  ++  L
Sbjct: 232 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 291

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   +  EM  K   P+   ++ L+   CR  ++  A ++ +QM   GC+ N 
Sbjct: 292 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 351

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              NI+I+   + G ++ A +  +NM   G +PD  +YT++L+GLC+    + A E+  +
Sbjct: 352 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 411

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            V  +        +TF+  LC++G    AT L+  +S
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 448



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/522 (18%), Positives = 206/522 (39%), Gaps = 54/522 (10%)

Query: 30  WTPLLEQTLHQLGLRDSLS--PSLVARVINPYLLTHHSLALG------------FFNWAS 75
           +T LLE      G   ++     + A+   P ++T++ +  G            F N  S
Sbjct: 214 YTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 273

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
               F    +SY ++LK L  +++   ++ +  ++       +   +  ++    +G   
Sbjct: 274 SY-GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 332

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  V  ++  +       +CN ++  +   G +D+A +  + M   G    TI +   
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY--- 389

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
                                               ++ G C+ +R E+A ++L E+  +
Sbjct: 390 ----------------------------------TTVLKGLCRAERWEDAKELLKEMVRK 415

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C P+ + +          G + +  +++++  + G       Y   + G  V+ R+  A
Sbjct: 416 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 475

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            EL   +     TI    L   + +   +D  +A      M++K   P + T + L    
Sbjct: 476 LELFYSMPCKPNTITYTTLLTGLCNAERLD--AAAELLAEMLQKDCAPNVVTFNVLVSFF 533

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C++   DE +E+ + +  +    ++ +YN ++  +       EA  ++  +   G+ PD+
Sbjct: 534 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 593

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y+S++    RED +  A K++  +   G       YN ++    +    +GA+  F  
Sbjct: 594 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 653

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           M+  G  P+  TY +L+EGL  E  L+   ++  +  +  V+
Sbjct: 654 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 695



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 36/266 (13%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           S ++  PR+A    +    +G  P +   + L +NLC+R ++ +   V +    +    D
Sbjct: 85  SPATTSPRAA-RLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 143

Query: 400 MESYNVMVS--------------------------------FLCTSGRLREAYGVIQEMK 427
           + +YN +V+                                 LC  GR+ EA  ++ +M 
Sbjct: 144 VFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
            +G  P V  Y  L+EA C+      A ++ D+M A GC+ N+ TYN++I+     G ++
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A    + +   G  PD  +YT++L+GLC     +   E+F + +  + M         +
Sbjct: 264 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 323

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHS 573
              CR G    A ++L  +S   GH 
Sbjct: 324 RFFCRGGMVERAIQVLEQMS---GHG 346



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 3/245 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + + + LC R +  E + +   +        + +Y V++  +C S    +A  V
Sbjct: 174 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 233

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG  P++  YN ++   CRE  +  A++  +++ + G   +  +Y  ++     
Sbjct: 234 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 293

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
               E    LF  M+EK   P+  T+  L+   C+   ++ A +V  +   H      ++
Sbjct: 294 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK-WI 599
            +  + ++C++G    A + L  + S     D  S+  +LK L  A   E A E +K  +
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 600 QESSP 604
           +++ P
Sbjct: 414 RKNCP 418


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 202/461 (43%), Gaps = 26/461 (5%)

Query: 101 NAIDSVLKQVKVNKITL--DSSVYRFIIPSLIQGKNTQKAFSVF----------NEVKFN 148
           N +++ L   K+ +  L  D+  Y  +I    + K    A+ VF          NEV + 
Sbjct: 209 NVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYT 268

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                     +L+  L   G I+ ALK+F +M+      +   + V I+    + +  + 
Sbjct: 269 ----------NLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           L++ +E++++     N     VLI  G CK  +++EA K+L E+  +   P  + Y  + 
Sbjct: 319 LNLFNEMKEK-GCEPNVHTYTVLI-DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           + +   G + +   +L         P T  Y E I GL  +R++ +A  L   ++  K +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 N+LI G     D  SA    + M E G VP   T S     LCK  + +E   +
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTL 496

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  + A     +   Y  ++   C  G++  AY +++ M      P+   YN L+E  C+
Sbjct: 497 FDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCK 556

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  ++ A  L  +M   G    + TY ILI +  + G  + AL++F++M+  G  PD  T
Sbjct: 557 EKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCT 616

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           YT+ L     +  L+   +V  K +N + +L   +  T +I
Sbjct: 617 YTAFLHAYFSQGMLEEVDDVIAK-MNEEGILPDLVTYTVLI 656



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 134/579 (23%), Positives = 246/579 (42%), Gaps = 74/579 (12%)

Query: 24  TRPARKWTPLLEQTLHQLGLRDSLSPSLVARV----INPYLLTHHSLALGFFNWASQQPN 79
           +RP  +  P L + L       SL+PS V+ +    ++P        AL FFNW + +P 
Sbjct: 49  SRPNWQKHPSLRKLL------PSLTPSHVSSLFAFNLDP------QTALSFFNWIALRPG 96

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F H+  SY S+L  L  +R +     V ++++++ I    S+   +              
Sbjct: 97  FKHNVHSYSSMLNILIRARLL----GVAEKIRISMIKSCCSIEDVLF-----------VL 141

Query: 140 SVFNEVKFNCE-DIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            VF ++  + E    P + C N++L  L+    ID    ++ E+ +  +  +   F   +
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMV 201

Query: 197 WKFCENAKLGQVL-SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
             +C   K+G V+ + L   +  +  +   +     +I G C+ K V+ A++V   +  +
Sbjct: 202 NGYC---KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK 258

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C+ + ++Y  +       G + E   +     +    P    Y   I            
Sbjct: 259 GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIY----------- 307

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
                               AL GS   ++   A+  FN M EKG  P + T + L   L
Sbjct: 308 --------------------ALSGSGRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGL 344

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK NK DE  ++   +S       + +YN ++   C  G + +A+ ++  M+     P+ 
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN L+   C++  +  A  L ++M     S +L TYN LI    +V ++E A RL   
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M E G+ PD  TY+  ++ LC+E  ++ A  +F+      V     I +  +   C+ G 
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK 524

Query: 556 FLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
             VA  LL  + +D  L +S ++ +L++ L   ++++ A
Sbjct: 525 IDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 197/466 (42%), Gaps = 44/466 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++  L   R+++   ++L ++   K++     Y  +I    +  + + A+ + + +
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             N         +  +  L  +G ++ A  +FD +  +GV+ + + +   I  +C+  K+
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKI 525

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               S+L+  R   ++ +  S    ++I G CK K+++EA  ++ ++     KP  + Y 
Sbjct: 526 DVAYSLLE--RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           I+  E    G+      V      LG  P    Y  F+     +  +   +E+ +VI   
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGML---EEVDDVIAKM 640

Query: 326 KFTIDDDVLNALIGSVSSID-------PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
               ++ +L  L+     ID          A  F   M++ G  P+L  +S L KNL   
Sbjct: 641 N---EEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697

Query: 379 NKSDE-----------------LVEVYKVLS------------ANDYFTDMESYNVMVSF 409
           N+  E                 + +V+K L              +    D+  Y  +++ 
Sbjct: 698 NRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAG 757

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C   RL EA G++  MK +G+ P    YNSL++ CC+  +   A +L D M  +G    
Sbjct: 758 FCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPL 817

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           L++Y +L+      G  E A  +FH +L  G   D   +  L++GL
Sbjct: 818 LESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGL 863


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 201/446 (45%), Gaps = 14/446 (3%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL+     +G +D A +MFD M   G + +++ +   I   C   +L + + ML+E+  +
Sbjct: 242 SLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDK 301

Query: 219 ENSMINGSVIAVLI-IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               I  +V A  I I   C   R  EA K+L +++ R C P+   Y  +       G  
Sbjct: 302 G---IEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK- 357

Query: 278 FEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           FE  + V  K    G+ P    Y   I  L VE R   A  + E ++S     + +  N 
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           +I    SI   + A   F+ M++ G  P + T + +     K+   +  + + +++  N 
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y  ++S     G+L  A+ +  EM   G+ P+V  YN+++        +  A 
Sbjct: 478 LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDAL 537

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ +M  SG   +  TYN++IS FS+   I  A      M+++G+ P+  TYTS ++GL
Sbjct: 538 ALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGL 597

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-RGLSSDLGHSD 574
           C+      AF++F++    D        S+ +  LC+ G    A +LL  G   ++   D
Sbjct: 598 CKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNV---D 654

Query: 575 SHVILLKSLAD---AREVEMAIEHIK 597
           ++  L++ L       E +  +E +K
Sbjct: 655 TYTTLVRGLCGKGRCYEADQLVESMK 680



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 124/510 (24%), Positives = 213/510 (41%), Gaps = 61/510 (11%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           L P L    +   L TH++    L FF+W S+   F H    + S+L  L   R     D
Sbjct: 72  LIPKLKPHHVVNLLDTHNNTESVLRFFHWVSRTHFFKHDMSCFVSMLNRLVRDRLFVPAD 131

Query: 105 SVLKQVKVNKITLDSSVYRFI-----IPSLIQGKNTQKAFS--VFNEVKFNCEDIGPEIC 157
           +V + + +     +  V R I     I +      T  +FS  +    KF+ + +G ++ 
Sbjct: 132 NV-RILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVY 190

Query: 158 ---------------NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
                          N+++ +L + G +  A  +   + H G    T  +   I   C+N
Sbjct: 191 IEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKN 250

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L     M D + K  +     SV    +I+G C   R+EEA  +L+E+  +  +P   
Sbjct: 251 GNLDLAFEMFDRMVK--DGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           AY I        G   E   +L K +K G  P    Y   I GL  +             
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRD------------- 355

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
             GKF +                   AI  ++ M+  G VPT  T S L   L    + +
Sbjct: 356 --GKFEV-------------------AIGVYHKMLADGLVPTAVTYSALINQLYVEGRFE 394

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
             + +++ + ++D   + E+YNV++   C+ G +++A  +  +M + G  P+V  YN ++
Sbjct: 395 TALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIII 454

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
               ++  +  A +L + M  +G   +  TY  LIS FS  G++E A  LF+ M+E G++
Sbjct: 455 HIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGIS 514

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           P+  TY +++ G      +  A  +F K V
Sbjct: 515 PNVVTYNAIINGYLTVAKVDDALALFWKMV 544



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 207/473 (43%), Gaps = 29/473 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  LS   +      V  ++  + +   +  Y  +I  L      + A ++F  +
Sbjct: 344 TYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWM 403

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +      E  N ++    S GYI  A  +FD+M   G   + I + + I  + +   +
Sbjct: 404 LSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYM 463

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              + +L+ ++   N +   +     +I GF +G ++E AF + +E+      P+ + Y 
Sbjct: 464 NNAMRLLEMMKG--NGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYN 521

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVS 324
            +   +  +  V +   +  K  + G  P +  Y   I G     RI EA+   G+++  
Sbjct: 522 AIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQ 581

Query: 325 GKFTIDDDVLNALIGSVSSIDP-----RSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCK 377
           G       +L  +I   S ID      R+++ F  F+ M ++   P L T S+L   LC+
Sbjct: 582 G-------LLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQ 634

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             ++++     + L  +    ++++Y  +V  LC  GR  EA  +++ MK+KGL P    
Sbjct: 635 EGQAEDA----ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEI 690

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +L+   C+   +  A K++D M  +G    L  Y  LI    +    + A  +F  ML
Sbjct: 691 YRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTML 750

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVF------NKSVNHD--VMLARSI 542
           +K    D   +T LL+GL +E     + E+       N ++N    VMLAR +
Sbjct: 751 KKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLAREL 803



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 219/499 (43%), Gaps = 19/499 (3%)

Query: 117 LDSSVYRFIIP--SLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDN 172
           ++ +V+ + IP  SL     + +A  +  ++K      GP +    +L++ L+ DG  + 
Sbjct: 303 IEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKK--RGCGPNVQTYTALISGLSRDGKFEV 360

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A+ ++ +M   G+  + + +   I +     +    L++  E     +S+ N     V I
Sbjct: 361 AIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIF-EWMLSHDSLPNTETYNV-I 418

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I GFC    +++A  + D++      P+ I Y I+   +   G +     +L+  +  G+
Sbjct: 419 IKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGL 478

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG---SVSSIDPRSA 349
              T  Y   I G     ++  A  L   +V    + +    NA+I    +V+ +D   A
Sbjct: 479 KLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVD--DA 536

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  M+E G VP+  T + +     K N+  E       +       ++ +Y   +  
Sbjct: 537 LALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC +GR   A+ +  EMK++   P++  Y+SL++  C+E     A++L D     GC  N
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPN 652

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  L+      G    A +L  +M +KG+ P    Y +LL G C+   +++A ++F+
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFD 712

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAR 587
             V        S     + +LC+      A  + + +     +SD  V  +LL  L    
Sbjct: 713 SMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEG 772

Query: 588 EVEMAIEHIKWIQESSPTM 606
           E ++++E +  ++  + T+
Sbjct: 773 ETDLSLELLHVMESRNCTL 791



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A +    +   G  P   T ++L    CK    D   E++  +  +    +  +Y+ +
Sbjct: 219 QEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSAL 278

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC+ GRL EA  +++EM  KG++P V  Y   + + C       A KL  +M   GC
Sbjct: 279 INGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGC 338

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N++TY  LIS  S  G+ E A+ ++H ML  G+ P A TY++L+  L  E   + A  
Sbjct: 339 GPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALT 398

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +F   ++HD +      +  +   C  G+   AT + 
Sbjct: 399 IFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIF 435



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 170/414 (41%), Gaps = 50/414 (12%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A   PN     ++Y+ I+        +N    +L+ +K N + LD+  Y  +I    +G 
Sbjct: 441 AGPSPNV----ITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGG 496

Query: 134 NTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             + AFS+FNE+  +   I P +   N+++    +   +D+AL +F +M   G   S+  
Sbjct: 497 KLEHAFSLFNEMVEH--GISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGT 554

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           + + I  F +  ++ +  +   ++ K+   ++   +     I G CK  R   AFK+  E
Sbjct: 555 YNMMISGFSKTNRISEAENFCGKMVKQ--GLLPNVITYTSFIDGLCKNGRTSLAFKIFHE 612

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++ R+  P+   Y  + +     G   + E +L      G  P  + Y   + GL  + R
Sbjct: 613 MKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGR 668

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNAL-IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             EA +L E +        +++  AL +G   +++  SA+  F+ M+  G  P LS    
Sbjct: 669 CYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLS---- 724

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
                                           Y  ++  LC +   ++A  + Q M +K 
Sbjct: 725 -------------------------------DYKALICALCKANFRQKAQCMFQTMLKKH 753

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            + D   +  L++   +E     + +L   M +  C+ N +T  +L  + S +G
Sbjct: 754 WNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELSALG 807



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 10/256 (3%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVYKVLSANDYFTDMESYNVMVSFLC 411
           M+  G  P L T + + K LC + K  E    +  ++   +  D FT    Y  ++   C
Sbjct: 193 MLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFT----YTSLIIGHC 248

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G L  A+ +   M + G DP+   Y++L+   C E  L  A  + ++M   G    + 
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            Y I I    + G    A++L   M ++G  P+  TYT+L+ GL ++   + A  V++K 
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS--DLGHSDSHVILLKSLADAREV 589
           +   ++      S  +  L   G F  A  +   + S   L +++++ +++K       +
Sbjct: 369 LADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYI 428

Query: 590 EMAIEHIKWIQESSPT 605
           + A      + ++ P+
Sbjct: 429 QKATAIFDQMLKAGPS 444



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  EM   G+ P++  +N++++  C +  ++ A+ +   +F  G   +  TY  LI    
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHC 248

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G ++ A  +F  M++ G  P++ TY++L+ GLC E  L+ A ++  + ++  +     
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 542 ILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
             +  ++SLC  G    A KLL     RG   ++    ++  L+  L+   + E+AI
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNV---QTYTALISGLSRDGKFEVAI 362


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 210/467 (44%), Gaps = 19/467 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +++ +++  L    +I    ++L ++  + +      Y  I+  + +  +T  A ++  +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++     I P   I ++++  L  DG   +A  +F EM  +G+      +   I  FC +
Sbjct: 245 ME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSS 303

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +      +L E+ +R+   I+  V+    +I+ F K  +  EA ++ DE+  R   P+ 
Sbjct: 304 GRWSDAEQLLQEMLERK---ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  + + F     +   E +       G +P    +   I G    +RI +  EL   
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 322 IVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +       D    N LI     + D  +A+     MI  G  P + T   L   LC   K
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 381 SDELVEVYKVLSA-----------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
             + +E++KV+             N    D+++YN+++S L   G+  EA  + +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ PD   Y+S+++  C++  L  A +++D M +   S N+ T+  LI+ + + G ++  
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           L LF  M  +G+  +A TY +L+ G  +  N+  A ++F + ++  V
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 185/438 (42%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKL--GLHPDVVTFT 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA  +  ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y     G IV+                             G     D  SA+
Sbjct: 214 GLQPTQITY-----GTIVD-----------------------------GMCKKGDTVSAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A++L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ +I  F +   ++ A  +F+ M  KG +P+  T+ +L++G C    +    E+ +
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++   +  +T +      G    A  LL+     GL  D+   D+   LL  L 
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKVMQKS 494



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/476 (21%), Positives = 201/476 (42%), Gaps = 58/476 (12%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICN--SLLAVLA 165
           K+ K+ L   V  F  ++  L       +A ++F+++ +  C    P +    +L+  L 
Sbjct: 139 KITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCR---PNVVTFTTLMNGLC 195

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--NSMI 223
            +G I  A+ + D M   G++ + I +G  +   C   K G  +S L+ +RK E  + +I
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC---KKGDTVSALNLLRKMEEVSHII 252

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              VI   II   CK  R  +A  +  E++ +   PD   Y  +   F   G   + E +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L++  +  ++P    Y   I   + E +  EA+EL                         
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL------------------------- 347

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    ++ M+ +G +P   T S++    CK+N+ D    ++ +++      ++ ++
Sbjct: 348 ---------YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++   C + R+ +   ++ EM   GL  D + YN+L+        L  A  L  +M +
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----------KGVAPDATTYTSLL 512
           SG   ++ T + L+    + G+++ AL +F  M +            GV PD  TY  L+
Sbjct: 459 SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI 518

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            GL  E     A E++ +  +  ++      S+ +  LC++     AT++   + S
Sbjct: 519 SGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 51/393 (12%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P++   N+L+     +G    A +++DEM  RG+  +TI +   I  FC+  +L    
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            M   +  +  S     +    +I G+C  KR+++  ++L E+       D   Y  +  
Sbjct: 381 HMFYLMATKGCS--PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F L+G +     +L++    G+ P        + GL    ++ +A E+ +V+   K  +
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 330 D---------DDV--LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           D          DV   N LI G ++      A   +  M  +G VP   T S++   LCK
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           +++ DE  +++  + +  +  ++ ++  +++  C +GR+ +   +  EM R+G+      
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI------ 612

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
                                          N  TY  LI  F +VG I GAL +F  M+
Sbjct: 613 -----------------------------VANAITYITLICGFRKVGNINGALDIFQEMI 643

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             GV PD  T  ++L GL  +  L+ A  +  K
Sbjct: 644 SSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676


>gi|357140804|ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Brachypodium distachyon]
          Length = 926

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 218/477 (45%), Gaps = 18/477 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y S++ +   +R+    D +   +  N + LD  +   ++  L Q    + A  VFN ++
Sbjct: 151 YKSLVFTYCKARRSLEADEMCCLMVKNGMYLDRMLGTALVKGLCQEGRLELAMDVFNRMR 210

Query: 147 FN-CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            N    +      +++  L   GY+D+  +++ EM  RG+E + + + V +W +C+N  +
Sbjct: 211 VNEGAQLDAYAYTTMIGGLFEHGYVDHGWELYQEMKDRGMEPTPVTYNVMMWWYCKNKWV 270

Query: 206 GQVLSMLDEVRKRENSMINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           G  + +        N M+ G V        +++   CK  ++ EA ++  ++  R   PD
Sbjct: 271 GAAMELY-------NVMVRGGVSPDLRCYTMLMTSLCKEGKLVEAEQLFTKMLERGVFPD 323

Query: 261 FIAYRIVAEEF-KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
            + +  +A  F K    VF R+  LK   KL  +    +      G        EA+ L 
Sbjct: 324 HVLFISIARFFPKGWEVVFVRKA-LKAVAKLDCSGELLELSSLASGCSNMSLQQEAERLL 382

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF--NFMIEKGRVPTLSTLSNLSKNLCK 377
           + ++       D +LN +I ++ S + R  + ++  + ++  G  P++ T + + K LC+
Sbjct: 383 DEMMRSNLLPIDAILNMMIIAMCS-EGRLDVSYYLLDKLVAYGYEPSVLTYNIVIKYLCR 441

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + + D+   +  ++ +     DM + ++MV+  C  G +  A  +  EM + GL+P ++ 
Sbjct: 442 QKRMDDARTLINLMQSRGVRPDMSTNSIMVTAYCKIGDIESALSLFDEMAKDGLEPSIAV 501

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+S++   CR    + A+    QM  +G   +   Y  L++ +S +   + A R+F  ML
Sbjct: 502 YDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACRVFDEML 561

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           E+G+ P +  Y +L+ GL ++  ++ A     + +         I +  +    R+G
Sbjct: 562 ERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFATQTVIYTMLINQFFRKG 618



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 200/424 (47%), Gaps = 40/424 (9%)

Query: 199 FCENAKLGQVLSMLDEVRKRENSMING----SVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            C+  +L   + + + +R  E + ++     ++I  L  HG+     V+  +++  E++ 
Sbjct: 193 LCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGY-----VDHGWELYQEMKD 247

Query: 255 RECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           R  +P  + Y ++   +   K +G+  E   V+ +    GV+P    Y   +  L  E +
Sbjct: 248 RGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRG---GVSPDLRCYTMLMTSLCKEGK 304

Query: 312 ICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIE-------KGRV 362
           + EA++L  +++  G F   D VL     S++   P+   +VF    ++        G +
Sbjct: 305 LVEAEQLFTKMLERGVFP--DHVL---FISIARFFPKGWEVVFVRKALKAVAKLDCSGEL 359

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
             LS+L++   N+  + +++ L++  +++ +N    D    N+M+  +C+ GRL  +Y +
Sbjct: 360 LELSSLASGCSNMSLQQEAERLLD--EMMRSNLLPID-AILNMMIIAMCSEGRLDVSYYL 416

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++   G +P V  YN +++  CR+  +  A+ L + M + G   ++ T +I+++ + +
Sbjct: 417 LDKLVAYGYEPSVLTYNIVIKYLCRQKRMDDARTLINLMQSRGVRPDMSTNSIMVTAYCK 476

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +G+IE AL LF  M + G+ P    Y S++  LC+  + + A     + +   ++    I
Sbjct: 477 IGDIESALSLFDEMAKDGLEPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVI 536

Query: 543 LSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
            +T +       H   A ++      RGL      S ++  L+  L    ++  A+ +++
Sbjct: 537 YTTLLNGYSTMRHTKAACRVFDEMLERGLQPG---SHAYGALINGLVKDNKIRKALHYLE 593

Query: 598 WIQE 601
            + E
Sbjct: 594 RMLE 597



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/504 (19%), Positives = 204/504 (40%), Gaps = 66/504 (13%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            +  S L+Y+ ++K L   ++++   +++  ++   +  D S    ++ +  +  + + A
Sbjct: 424 GYEPSVLTYNIVIKYLCRQKRMDDARTLINLMQSRGVRPDMSTNSIMVTAYCKIGDIESA 483

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA------------------------- 173
            S+F+E+  +  +    + +S++A L   G+   A                         
Sbjct: 484 LSLFDEMAKDGLEPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNG 543

Query: 174 ----------LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
                      ++FDEM  RG++  +  +G  I    ++ K+ + L  L+  R  E    
Sbjct: 544 YSTMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLE--RMLEEGFA 601

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             +VI  ++I+ F +         ++D +     +PD I Y  +        +   R + 
Sbjct: 602 TQTVIYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALV-------TGICRNID 654

Query: 284 LKKKRKLGVAPRTNDYREFILGLI------------------VERRICEAKELGEVIVSG 325
            +  R   +A + ++ R  +  L+                   E +I  A+ + + +V  
Sbjct: 655 RRDMRP-SLAAKLDEARYMLFRLLPQISFGTRKGKQKKKRMSSEEKIDLAQNIIQDLVES 713

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               D  + N ++ G   +     A    + M + G +P   T + L  N  +   S+  
Sbjct: 714 GMMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQSGVLPNHVTYTILMNNDIRLGDSNRA 773

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           ++++  L+++ +  D   YN  +  L  + R +EA      M+++G  P  + Y+ +ME 
Sbjct: 774 IQLFNSLNSDGHVFDDVVYNTFIKGLSLARRTKEALSFFLMMQKRGFVPSKAAYDKIMEQ 833

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
              E+    A  ++D MF  G       Y+ L+   ++  +     R+F  MLEKG + D
Sbjct: 834 LLAENSTDLALNIFDDMFCHGYIPRYSNYSSLLLVLAKDNQWREVDRVFMMMLEKGRSLD 893

Query: 505 ATTYTSLLEGLC-QETNLQAAFEV 527
             T   LLE LC ++  L  AFE+
Sbjct: 894 TET-KKLLEELCYKQGELDLAFEL 916



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 189/450 (42%), Gaps = 19/450 (4%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA--SDGYIDNALKMFD 178
            Y  +I  L + K    A ++ N ++     + P++  + + V A    G I++AL +FD
Sbjct: 431 TYNIVIKYLCRQKRMDDARTLINLMQ--SRGVRPDMSTNSIMVTAYCKIGDIESALSLFD 488

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-ENSMINGSVIAVLIIHGFC 237
           EM+  G+E S   +   I   C   +LG        +R+  E  ++   VI   +++G+ 
Sbjct: 489 EMAKDGLEPSIAVYDSIIACLC---RLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYS 545

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
             +  + A +V DE+  R  +P   AY  +         + +    L++  + G A +T 
Sbjct: 546 TMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFATQTV 605

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
            Y   I     +       +L ++++      D     AL+ G   +ID R         
Sbjct: 606 IYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNIDRRDMRPSLAAK 665

Query: 357 IEKGR------VPTLSTLSNLSKNLCKRNKSDELVE----VYKVLSANDYFTDMESYNVM 406
           +++ R      +P +S  +   K   KR  S+E ++    + + L  +    D+  YN M
Sbjct: 666 LDEARYMLFRLLPQISFGTRKGKQKKKRMSSEEKIDLAQNIIQDLVESGMMPDLHIYNGM 725

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC + ++ +AY ++  M++ G+ P+   Y  LM    R      A +L++ + + G 
Sbjct: 726 LNGLCRAQKMDDAYNLLSLMEQSGVLPNHVTYTILMNNDIRLGDSNRAIQLFNSLNSDGH 785

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +   YN  I   S     + AL  F  M ++G  P    Y  ++E L  E +   A  
Sbjct: 786 VFDDVVYNTFIKGLSLARRTKEALSFFLMMQKRGFVPSKAAYDKIMEQLLAENSTDLALN 845

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +F+    H  +   S  S+ ++ L +   +
Sbjct: 846 IFDDMFCHGYIPRYSNYSSLLLVLAKDNQW 875



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/472 (19%), Positives = 190/472 (40%), Gaps = 45/472 (9%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++K L    ++     V  +++VN+   LD+  Y  +I  L +       + ++ E+K 
Sbjct: 188 ALVKGLCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGYVDHGWELYQEMKD 247

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
              +  P   N ++     + ++  A+++++ M   GV      + + +   C+  KL +
Sbjct: 248 RGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRGGVSPDLRCYTMLMTSLCKEGKLVE 307

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              +  ++ +R   +    V+ + I   F KG  V    K L  +   +C  + +    +
Sbjct: 308 AEQLFTKMLER--GVFPDHVLFISIARFFPKGWEVVFVRKALKAVAKLDCSGELLELSSL 365

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
           A     M    E E +L +  +  + P        I+ +  E R+  +  L + +V+  +
Sbjct: 366 ASGCSNMSLQQEAERLLDEMMRSNLLPIDAILNMMIIAMCSEGRLDVSYYLLDKLVAYGY 425

Query: 328 TIDDDVLNALIGSVSSI----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                  N +I  +       D R+ I   N M  +G  P +ST S +    CK    + 
Sbjct: 426 EPSVLTYNIVIKYLCRQKRMDDARTLI---NLMQSRGVRPDMSTNSIMVTAYCKIGDIES 482

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM- 442
            + ++  ++ +     +  Y+ +++ LC  G  +EA   +++M   GL PD   Y +L+ 
Sbjct: 483 ALSLFDEMAKDGLEPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLN 542

Query: 443 --------EACCR--------------------------EDLLRPAKKLWDQMFASGCSG 468
                   +A CR                          ++ +R A    ++M   G + 
Sbjct: 543 GYSTMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFAT 602

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
               Y +LI++F   GE    L L   M++  V PD  TY +L+ G+C+  +
Sbjct: 603 QTVIYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNID 654



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 180/467 (38%), Gaps = 66/467 (14%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I N ++  + S+G +D +  + D++   G E S + + + I   C   ++    ++++ +
Sbjct: 396 ILNMMIIAMCSEGRLDVSYYLLDKLVAYGYEPSVLTYNIVIKYLCRQKRMDDARTLINLM 455

Query: 216 RKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           + R     M   S++    +  +CK   +E A  + DE+     +P    Y  +      
Sbjct: 456 QSRGVRPDMSTNSIM----VTAYCKIGDIESALSLFDEMAKDGLEPSIAVYDSIIACLCR 511

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +G   E E  L++  + G+ P                                   D+ +
Sbjct: 512 LGHFKEAEFTLRQMIEAGLVP-----------------------------------DEVI 536

Query: 334 LNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              L+   S++   ++A   F+ M+E+G  P       L   L K NK  + +   + + 
Sbjct: 537 YTTLLNGYSTMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERML 596

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR---ED 449
              + T    Y ++++     G       ++  M +  ++PD+  Y +L+   CR     
Sbjct: 597 EEGFATQTVIYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNIDRR 656

Query: 450 LLRPAK------------KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
            +RP+             +L  Q+      G  K       + S   +I+ A  +  +++
Sbjct: 657 DMRPSLAAKLDEARYMLFRLLPQISFGTRKGKQKK-----KRMSSEEKIDLAQNIIQDLV 711

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           E G+ PD   Y  +L GLC+   +  A+ + +      V+      +  M +  R G   
Sbjct: 712 ESGMMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQSGVLPNHVTYTILMNNDIRLGDSN 771

Query: 558 VATKLLRGLSSDLGHSDSHVI---LLKSLADAREVEMAIEHIKWIQE 601
            A +L   L+SD GH    V+    +K L+ AR  + A+     +Q+
Sbjct: 772 RAIQLFNSLNSD-GHVFDDVVYNTFIKGLSLARRTKEALSFFLMMQK 817



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 41/263 (15%)

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           SA+  F+ +IE   VP+ ++ + L + +C  +   E+V+++ +         +  +  ++
Sbjct: 61  SALTCFDHLIESRYVPSPASSAALLRAMCAASMYSEVVDLFVLWEGAPSPLPVSKFPFLI 120

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM-------------EAC--------- 445
             LC+ G + +A  +   M   GL P V  Y SL+             E C         
Sbjct: 121 HGLCSKGAVDKARFLFDVMLGLGLAPPVRVYKSLVFTYCKARRSLEADEMCCLMVKNGMY 180

Query: 446 -------------CREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALR 491
                        C+E  L  A  ++++M  + G   +   Y  +I    E G ++    
Sbjct: 181 LDRMLGTALVKGLCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGYVDHGWE 240

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L+  M ++G+ P   TY  ++   C+   + AA E++N  V   V       +  M SLC
Sbjct: 241 LYQEMKDRGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRGGVSPDLRCYTMLMTSLC 300

Query: 552 RRGHFLVA----TKLL-RGLSSD 569
           + G  + A    TK+L RG+  D
Sbjct: 301 KEGKLVEAEQLFTKMLERGVFPD 323



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 82/422 (19%), Positives = 146/422 (34%), Gaps = 85/422 (20%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN--- 143
           Y ++L   S  R   A   V  ++    +   S  Y  +I  L++    +KA        
Sbjct: 537 YTTLLNGYSTMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERML 596

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN- 202
           E  F  + +   I   L+      G     L + D M    VE   I +G  +   C N 
Sbjct: 597 EEGFATQTV---IYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNI 653

Query: 203 ----------AKLGQVLSML--------------DEVRKR------------------EN 220
                     AKL +   ML               + +KR                  E+
Sbjct: 654 DRRDMRPSLAAKLDEARYMLFRLLPQISFGTRKGKQKKKRMSSEEKIDLAQNIIQDLVES 713

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            M+    I   +++G C+ +++++A+ +L  +      P+ + Y I+             
Sbjct: 714 GMMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQSGVLPNHVTYTIL------------- 760

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
              +    +LG + R                   A +L   + S     DD V N  I  
Sbjct: 761 ---MNNDIRLGDSNR-------------------AIQLFNSLNSDGHVFDDVVYNTFIKG 798

Query: 341 VS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           +S +   + A+ FF  M ++G VP+ +    + + L   N +D  + ++  +  + Y   
Sbjct: 799 LSLARRTKEALSFFLMMQKRGFVPSKAAYDKIMEQLLAENSTDLALNIFDDMFCHGYIPR 858

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +Y+ ++  L    + RE   V   M  KG   D      L E C ++  L  A +L  
Sbjct: 859 YSNYSSLLLVLAKDNQWREVDRVFMMMLEKGRSLDTETKKLLEELCYKQGELDLAFELEG 918

Query: 460 QM 461
            M
Sbjct: 919 NM 920


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 191/416 (45%), Gaps = 36/416 (8%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           V+  ++ + +Q +  ++    F  +K     +    CNSLL  L   G++D A +++ E+
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              GV+ +     + I   C+N K+    S L ++   E  +    V    +I+ +C+  
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM--EEKGVFPDVVTYNTLINAYCRQG 146

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            +EEAF+++D +  +  KP    Y  +       G     + VL +  K+G++P T  Y 
Sbjct: 147 LLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYN 206

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
                L+VE   C                +D++++A          R     F+ M  +G
Sbjct: 207 I----LLVE--CCR---------------NDNMMDA---------ER----IFDEMPSQG 232

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            VP L + S L   L K    D+ ++ ++ +       D   Y +++   C +G + EA 
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 292

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V  EM  +G   DV  YN+++   C+E +L  A +L+ +M   G   +  T+  LI+ +
Sbjct: 293 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 352

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           S+ G +  A+ LF  M+++ + PD  TY +L++G C+ + ++   E++N  ++  +
Sbjct: 353 SKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 408



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 9/387 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL     +  + +A ++FDEM  +GV    + F   I    +N  L Q L    +++ 
Sbjct: 206 NILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKN 265

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +   +VI  ++I GFC+   + EA KV DE+  + C  D + Y  +         +
Sbjct: 266 A--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML 323

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + +  +  + GV P    +   I G   +  + +A  L E+++      D    N L
Sbjct: 324 SEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 383

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     +       +N MI +   P   +   L    C      E   ++  +    +
Sbjct: 384 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 443

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + + N +V   C +G   +A   +  M  KG+ PD   YN+L+    +E+ +  A  
Sbjct: 444 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 503

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M  SG   ++ TYN++++ FS  G ++ A  +   M+E+GV PD +TYTSL+ G  
Sbjct: 504 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 563

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSIL 543
            + NL+ AF V      HD ML R  +
Sbjct: 564 TQNNLKEAFRV------HDEMLQRGFV 584



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 212/526 (40%), Gaps = 72/526 (13%)

Query: 90  ILKSLSLSRQINAIDSVLKQ-VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +LKS  L   INA +S+L   VKV  + L   +Y+ ++ S +Q                 
Sbjct: 52  VLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQ----------------- 94

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
              +     N ++  L  +  I+N      +M  +GV    + +   I  +C    L + 
Sbjct: 95  ---VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             ++D +  +   +         II+G CK  +   A  VLDE+      PD   Y I+ 
Sbjct: 152 FELMDSMSGK--GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 209

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
            E     ++ + E +  +    GV P    +   I  L     + +A +    + +    
Sbjct: 210 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 269

Query: 329 IDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            D+ +   LIG        S A+   + M+E+G V  + T + +   LCK     E  E+
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 329

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  ++    F D  ++  +++     G + +A  + + M ++ L PDV  YN+L++  C+
Sbjct: 330 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH------------- 494
              +    +LW+ M +     N  +Y ILI+ +  +G +  A RL+              
Sbjct: 390 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT 449

Query: 495 ----------------------NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
                                 NML KG+ PD  TY +L+ G  +E N+  AF + NK  
Sbjct: 450 CNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKME 509

Query: 533 NH----DVMLARSILSTFMISLCRRGHF----LVATKLL-RGLSSD 569
           N     DV+    IL+ F     R+G      L+  K++ RG++ D
Sbjct: 510 NSGLLPDVITYNVILNGF----SRQGRMQEAELIMLKMIERGVNPD 551



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 195/427 (45%), Gaps = 15/427 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+  L  + +      VL ++    ++ D++ Y  ++    +  N   A  +F+E
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 227

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P++ +  +L+ +L+ +G +D ALK F +M + G+    + + + I  FC N
Sbjct: 228 MP--SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 285

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECK 258
             + + L + DE+ ++      G V+ V+    I++G CK K + EA ++  E+  R   
Sbjct: 286 GVMSEALKVRDEMLEQ------GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 339

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PDF  +  +   +   G++ +   + +   +  + P    Y   I G      + +  EL
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 399

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              ++S +   +      LI    ++   S A   ++ M+EKG   T+ T + + K  C+
Sbjct: 400 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 459

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
              + +  E    +       D  +YN +++       +  A+ ++ +M+  GL PDV  
Sbjct: 460 AGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVIT 519

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN ++    R+  ++ A+ +  +M   G + +  TY  LI+       ++ A R+   ML
Sbjct: 520 YNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 579

Query: 498 EKGVAPD 504
           ++G  PD
Sbjct: 580 QRGFVPD 586



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 56/329 (17%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
           R++ E  E   V+ S    +  +  N+L+G +  +     A   +  ++  G    + TL
Sbjct: 41  RKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 100

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   LCK  K +        +     F D+ +YN +++  C  G L EA+ ++  M  
Sbjct: 101 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 160

Query: 429 KGLDPDVSFYNSLMEA-----------------------------------CCREDLLRP 453
           KGL P V  YN+++                                     CCR D +  
Sbjct: 161 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 220

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A++++D+M + G   +L +++ LI   S+ G ++ AL+ F +M   G+APD   YT L+ 
Sbjct: 221 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 280

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----------------RG--- 554
           G C+   +  A +V ++ +    +L     +T +  LC+                RG   
Sbjct: 281 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 340

Query: 555 HFLVATKLLRGLSSDLGHSDSHVILLKSL 583
            F   T L+ G S D G+ +  V L + +
Sbjct: 341 DFYTFTTLINGYSKD-GNMNKAVTLFEMM 368



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           ++++V     + +LRE     + +K KGL   ++  NSL+    +   +  A +++ ++ 
Sbjct: 30  FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 89

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            SG   N+ T NI+I+   +  +IE       +M EKGV PD  TY +L+   C++  L+
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 149

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSD 569
            AFE+ +      +       +  +  LC+ G +L A  +L      G+S D
Sbjct: 150 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L +   +  K  E  E ++VL +      + + N ++  L   G +  A+ + QE+ R G
Sbjct: 33  LVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSG 92

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  +V   N ++ A C+   +   K     M   G   ++ TYN LI+ +   G +E A 
Sbjct: 93  VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAF 152

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L  +M  KG+ P   TY +++ GLC+      A  V ++ +   +    +  +  ++  
Sbjct: 153 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 212

Query: 551 CRRGHFLVATKLLRGLSS 568
           CR  + + A ++   + S
Sbjct: 213 CRNDNMMDAERIFDEMPS 230



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 121/282 (42%), Gaps = 37/282 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++IL  L   + ++  D +  ++    +  D   +  +I    +  N  KA ++F E
Sbjct: 308 VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF-E 366

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     ++ P++   N+L+        ++   +++++M  R +  + I +G+ I  +C  
Sbjct: 367 MMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 425

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING-------------------------SVIA 229
             + +   + DE+ ++         N+++ G                          +  
Sbjct: 426 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 485

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I+GF K + ++ AF +++++      PD I Y ++   F   G + E E+++ K  +
Sbjct: 486 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 545

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            GV P  + Y   I G + +  + EA  + + ++   F  DD
Sbjct: 546 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 587


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 136/624 (21%), Positives = 263/624 (42%), Gaps = 76/624 (12%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI-- 103
           ++SPS V+ + +  L      AL F +W SQ P + HS  SY S+L  L  +  +  +  
Sbjct: 87  AISPSHVSSLFS--LDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK 144

Query: 104 ---------DSVLKQV-------KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK- 146
                    DSV   +       K+NK       Y+ II       N+   F + +E+K 
Sbjct: 145 IRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQ 204

Query: 147 FNCEDIGPEIC------NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
              E +  ++C      N ++      G ++ A +   ++   G++     +   I  +C
Sbjct: 205 VYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYC 264

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +   L     + +E+  +        V    +IHG C  +R++EA  +  +++  EC P 
Sbjct: 265 QRKDLDSAFKVFNEMPLK--GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322

Query: 261 FIAYRIVAEEFKLMGSVFEREV--VLKKKRKLGVAPRTNDYREFI--------------- 303
              Y ++ +   L GS  + E   ++K+  + G+ P  + Y   I               
Sbjct: 323 VRTYTVLIKS--LCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 304 LGLIVER--------------------RICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           LG ++E+                     I +A ++ E++ S K + +    N LI     
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            +   A+   N M+E+  +P + T ++L    C+    D    +  +++      D  +Y
Sbjct: 441 SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             M+  LC S R+ EA  +   +++KG++P+V  Y +L++  C+   +  A  + ++M +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
             C  N  T+N LI      G+++ A  L   M++ G+ P  +T T L+  L ++ +   
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDH 620

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVI 578
           A+  F + ++          +TF+ + CR G  L A  ++      G+S DL    S   
Sbjct: 621 AYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS--- 677

Query: 579 LLKSLADAREVEMAIEHIKWIQES 602
           L+K   D  +   A + +K ++++
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDT 701



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 122/562 (21%), Positives = 228/562 (40%), Gaps = 39/562 (6%)

Query: 51  LVARVINPYLLTHHSLALGFF---NWASQQPNFTHSPL--------SYHSILKSLSLSRQ 99
           +V   ++P   T+ SL +G+    +  S    F   PL        +Y  ++  L ++R+
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--C 157
           I+    +  ++K ++       Y  +I SL   +   +A ++  E++     I P I   
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTY 361

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
             L+  L S    + A ++  +M  +G+  + I +   I  +C   K G +   +D V  
Sbjct: 362 TVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC---KRGMIEDAVDVVEL 418

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E+  ++ +      +I G+CK   V +A  VL+++  R+  PD + Y  + +     G+
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                 +L      G+ P    Y   I  L   +R+ EA +L + +       +  +  A
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G   +     A +    M+ K  +P   T + L   LC   K  E   + + +    
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + +  +++  L   G    AY   Q+M   G  PD   Y + ++  CRE  L  A+
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            +  +M  +G S +L TY+ LI  + ++G+   A  +   M + G  P   T+ SL++ L
Sbjct: 658 DMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717

Query: 516 ---------------CQETNL---QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
                          C  +N+       E+  K V H V          ++ +C  G+  
Sbjct: 718 LEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLR 777

Query: 558 VATKLLRGLSSDLGHSDSHVIL 579
           VA K+   +  + G S S ++ 
Sbjct: 778 VAEKVFDHMQRNEGISPSELVF 799



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/454 (21%), Positives = 195/454 (42%), Gaps = 35/454 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++     S   ++   +L  +    +  D   Y  +I SL + K  ++A  +F+ 
Sbjct: 463 VTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDS 522

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++   + + P +    +L+      G +D A  M ++M  +    +++ F   I   C +
Sbjct: 523 LEQ--KGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCAD 580

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            KL +  ++L+E   +       S   +LI H   K    + A+    ++     KPD  
Sbjct: 581 GKLKEA-TLLEEKMVKIGLQPTVSTDTILI-HRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y    + +   G + + E ++ K R+ GV+P    Y   I G             G++ 
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY------------GDL- 685

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE------KGRVPTLSTLSNLSKNLC 376
             G+     DVL  +  +       + +     ++E      KG  P L  +SN+ +   
Sbjct: 686 --GQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMME--- 740

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDV 435
                D +VE+ + +  +    + +SY  ++  +C  G LR A  V   M+R +G+ P  
Sbjct: 741 ----FDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE 796

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             +N+L+  CC+      A K+ D M   G    L++  +LI    + GE E    +F N
Sbjct: 797 LVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQN 856

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +L+ G   D   +  +++G+ ++  ++A +E+FN
Sbjct: 857 LLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFN 890



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 2/207 (0%)

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  YN+L+ +  R  L+   K+++ +M       N+ TYN +++ + ++G +E A +   
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            ++E G+ PD  TYTSL+ G CQ  +L +AF+VFN+             +  +  LC   
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302

Query: 555 HFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612
               A  L   +  D       ++ +L+KSL  +     A+  +K ++E+          
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362

Query: 613 ELFASLSSSSYPEPILLLLHALQEKCL 639
            L  SL S    E    LL  + EK L
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGL 389



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 126/336 (37%), Gaps = 53/336 (15%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L  DG  D+A   F +M   G +     +  FI  +C   +L     M+   + RE
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM--AKMRE 665

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD---------------FIAY 264
           N +         +I G+    +   AF VL  +R   C+P                +   
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQ 725

Query: 265 RIVAEEFKLMGSVFEREVV---LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           +    E   M ++ E + V   L+K  +  V P    Y + ILG      ICE   +G +
Sbjct: 726 KGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG------ICE---VGNL 776

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            V+ K                        VF +    +G  P+    + L    CK  K 
Sbjct: 777 RVAEK------------------------VFDHMQRNEGISPSELVFNALLSCCCKLKKH 812

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E  +V   +    +   +ES  V++  L   G       V Q + + G   D   +  +
Sbjct: 813 NEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKII 872

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           ++   ++ L+    +L++ M  +GC  + +TY++LI
Sbjct: 873 IDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 164/346 (47%), Gaps = 6/346 (1%)

Query: 213 DEVRKRENSMINGSVIAVLIIHGF-----CKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
           D V    N M+    +     +G+     C+ +R EEA  V   +  + C P+  +Y I+
Sbjct: 34  DHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSIL 93

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                    V E   +L +    G  P    Y   + GL    ++ EA +L   +V    
Sbjct: 94  IAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGC 153

Query: 328 TIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D  V N LI   S   D   A   F  M+EKG +PT+ T ++L     ++ +   +  
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++K +       ++ ++N ++   C  G + EA+ +  EM+  G  PDV  YN+LM   C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
            +     A++L  +M  SG   ++ +YNILI  +S+ G ++ A++LF+ + + G+ PDA 
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           +Y+++++ LC+   + AAF VF   + +      +++   +I LCR
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCR 379



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 203/488 (41%), Gaps = 77/488 (15%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           + FF WA  Q ++ H  LSY+ +L+ L+ S + + +      +       ++  Y +++ 
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           SL Q +  ++A SV                                   F  M+ +G   
Sbjct: 61  SLCQAQRFEEARSV-----------------------------------FRGMAAQGCSP 85

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEV---RKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           +   + + I   C   K+ +   +L+E+     + N +  GS+++     G CK  +++E
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS-----GLCKMGKLKE 140

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +   +  R C PD + Y ++ + F   G + E   + ++  + G  P    Y   + 
Sbjct: 141 AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLS 200

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G    R+             G+F           G V S+        F  M+ +G VP 
Sbjct: 201 GF--SRK-------------GEF-----------GRVQSL--------FKDMLRQGCVPN 226

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + T +NL    CK     E   ++  + +     D+ SYN ++  +C+ G+  EA  +++
Sbjct: 227 IFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLR 286

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM R G+ PD+  YN L++   +   L  A KL+ ++  SG   +  +Y+ +I      G
Sbjct: 287 EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAG 346

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           ++  A  +F +M+  G APDA     L+ GLC+   L  + E+F   V  + +      +
Sbjct: 347 KVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYN 406

Query: 545 TFMISLCR 552
             M  LC+
Sbjct: 407 LLMYKLCK 414



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +N M+  G VP   T   L ++LC+  + +E   V++ ++A     ++ SY+++++ LC 
Sbjct: 40  YNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             ++ EA  ++ EM   G  P+V  Y SL+   C+   L+ A  L+ +M   GC  +   
Sbjct: 100 GQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV 159

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN+LI  FS+ G++  A RLF  MLEKG  P   TY SLL G  ++        +F   +
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML 219

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
               +      +  +   C+ G  + A +L 
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%)

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L K  + D +   Y  +       +  +Y  ++  LC + R  EA  V + M  +G  P+
Sbjct: 27  LAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPN 86

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y+ L+   CR   +  A +L ++M   G   N+ TY  L+S   ++G+++ A+ LF 
Sbjct: 87  VFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS 146

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M+ +G  PD   Y  L++G  ++ ++  A+ +F + +    +      ++ +    R+G
Sbjct: 147 RMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKG 206

Query: 555 HF 556
            F
Sbjct: 207 EF 208


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 6/336 (1%)

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +W  C + K  Q +  L+E+   E+ ++   +    IIHG+C+  +VE+AF+  +++  +
Sbjct: 237 LW-LCRSGKTDQSIDKLNELL--ESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEK 293

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             KPD     I+       G +     +       G A     Y   I GL  E R  EA
Sbjct: 294 SFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 353

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSK 373
            +L   +   K   D    NA++ +++  + +   A  F N M+EK   P L T + L +
Sbjct: 354 FDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLR 413

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLD 432
            LC     D  ++++    +     D  +YN ++S LC  GR  EA+ ++ EM+ K GL 
Sbjct: 414 GLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLV 473

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD + YN+++   CRE  +  A +  ++M       +L T NIL+      G +  AL+L
Sbjct: 474 PDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKL 533

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           F+  + KG A DA TY +++ GLC+E   + AF++ 
Sbjct: 534 FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 569



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVM--VSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           +NK  E + +   +     F D  SYN +  V +LC SG+  ++   + E+   GL P  
Sbjct: 205 KNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQ 264

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+++   CRE  +  A +  ++M       +L T NIL+      G ++ AL+LF+ 
Sbjct: 265 ITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNT 324

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + KG A DA TY +++ GLC+E   + AF++ 
Sbjct: 325 WISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 357



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 36/225 (16%)

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+  K+D+ ++    L  +       +YN ++   C  G++ +A+    +M  K   PD
Sbjct: 239 LCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPD 298

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +   N L+   C E +L  A KL++   + G + +  TYN +IS   + G  E A  L  
Sbjct: 299 LFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLA 358

Query: 495 NMLEKGVAPDATTYTS------------------------------------LLEGLCQE 518
            M EK + PD  TY +                                    LL GLC E
Sbjct: 359 EMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTE 418

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             L  A ++FN  ++    +     +T +  LC+ G F  A  LL
Sbjct: 419 GMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 463


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 201/447 (44%), Gaps = 4/447 (0%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASDGYIDNALKMF 177
           SSV+  ++ S  +     KA S+ +  + +    G    N++L A + S   I  A  +F
Sbjct: 134 SSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM    V  +   + + I  FC    L   L   D + K+    +   V    +I G+C
Sbjct: 194 KEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKK--GCLPNVVTYNTLIDGYC 251

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K +++++ F++L  + ++  +P+ I+Y +V       G + E   VL +  K G +    
Sbjct: 252 KLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEV 311

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFM 356
            Y   I G   E    +A  +   ++    +       +LI S+    +   A  F + M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM 371

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
             +G  P   T + L     ++   +E   V K +  N +   + +YN +++  C +G++
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKM 431

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  V+++MK KGL PDV  Y++++   CR   +  A ++  +M A G   +  TY+ L
Sbjct: 432 VDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSL 491

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F E    + A  LF  ML  G+ PD  TYT+L+   C E +LQ A ++ N+ V   V
Sbjct: 492 IQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV 551

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL 563
           +      S  +  L ++     A +LL
Sbjct: 552 LPDVVTYSVLINGLNKQARTREAKRLL 578



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 230/536 (42%), Gaps = 37/536 (6%)

Query: 75  SQQPNFTHSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           SQ   F    LSY+++L  ++   R I+  ++V K++  ++++ +   Y  +I       
Sbjct: 160 SQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAG 219

Query: 134 NTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGY-----IDNALKMFDEMSHRGV 185
           N   A   F+ + K  C    P +   N+L+     DGY     ID+  ++   M+ +G+
Sbjct: 220 NLDVALRFFDRMEKKGCL---PNVVTYNTLI-----DGYCKLRKIDDGFELLRSMALKGL 271

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           E + I + V I   C   ++ ++  +L E+ KR  S+    V    +I G+CK     +A
Sbjct: 272 EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL--DEVTYNTLIKGYCKEGNFHQA 329

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             +  E+      P  I Y  +       G++      L + R  G+ P    Y   + G
Sbjct: 330 LVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPT 364
              +  + EA  + + ++   F+      NALI G   +     AI     M EKG  P 
Sbjct: 390 FSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD 449

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + + S +    C+    DE + V + + A     D  +Y+ ++   C   R +EA  +  
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFD 509

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM R GL PD   Y +L+ A C E  L+ A +L ++M   G   ++ TY++LI+  ++  
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569

Query: 485 EIEGALRLFHNML-EKGVAPDATTYT--------------SLLEGLCQETNLQAAFEVFN 529
               A RL   +  E+ V  D T +T              SL++G C +  +  A +VF 
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFE 629

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSL 583
             +  +     +  +  +   CR G    A  L + +  S  L H+ + + L+K+L
Sbjct: 630 SMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTL 685



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 199/473 (42%), Gaps = 32/473 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     +SY+ ++  L    ++  I  VL ++     +LD   Y  +I    +  N  
Sbjct: 272 EPNL----ISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +  E+  +   + P +    SL+  +   G ++ A +  D+M  RG+  +   +  
Sbjct: 328 QALVMHAEMLRH--GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +  F +   + +   +L E+   +N      V    +I+G C   ++ +A  VL++++ 
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMI--DNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKE 443

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERR 311
           +   PD ++Y  V   F      ++ +  L+ KRK+   G+ P T  Y   I G   +RR
Sbjct: 444 KGLTPDVVSYSTVLSGF---CRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRR 500

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             EA +L + ++      D+    ALI +     D + AI   N M+EKG +P + T S 
Sbjct: 501 TKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSV 560

Query: 371 LSKNLCKRNKSDELVEV---------------YKVLSANDYFTDMESYNVMVSFLCTSGR 415
           L   L K+ ++ E   +               Y  L  N    + +S   ++   C  G 
Sbjct: 561 LINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGM 620

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  V + M  K   PD + YN ++   CR   +R A  L+ +M  SG   +  T   
Sbjct: 621 MTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIA 680

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           L+    + G++     +  N+L      +A     L+E   +E N+    +V 
Sbjct: 681 LVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVL 733


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 202/455 (44%), Gaps = 7/455 (1%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + ++ IL S+   +      S+ KQ+ +  IT        +I       +   AFSV 
Sbjct: 77  SVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVL 136

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
             V      +      +++  L  +G +  AL+  D +  +G     + +G  I   C  
Sbjct: 137 GMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLC-- 194

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            K+G      + + K E  ++  +V+   +I+ G CK   V EA  +  ++  R   PD 
Sbjct: 195 -KIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDV 253

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +   F  +G   E   +L       V      Y   I  L  +  + +A ++  +
Sbjct: 254 FTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNL 313

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++      D    N L+ G     D   A   F+   E G  P + + + L    CK N+
Sbjct: 314 MIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNR 373

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE + ++  ++      ++ +Y+ ++  LC SGR+  A+ +   +   G  P+V  YN 
Sbjct: 374 IDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++A C+  L+  A +L++ MF  G + N+ +YNILI+ + +   I+ A+ LF  M  + 
Sbjct: 434 MLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRN 493

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           + PD+ TY  L++GLC+   +  A+E+FN  V HD
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFN--VMHD 526



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 203/452 (44%), Gaps = 10/452 (2%)

Query: 40  QLGLRDSLSPSLV--ARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL 96
           Q+GLR  ++PS+V  + +IN Y  L H   A        ++  +  + ++  +I+K L +
Sbjct: 103 QMGLR-GITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKR-GYQLNAITLTTIMKGLCI 160

Query: 97  SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI 156
           + ++         V      LD   Y  +I  L +   T++AF + ++++         I
Sbjct: 161 NGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVI 220

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            N ++  L  DG +  A  ++ ++  RG++     +   I  FC   +  +V  +L ++ 
Sbjct: 221 YNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMV 280

Query: 217 KRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            R    +N +V    ++I   CK   + +A  + + +  R  +PD + +  +   + L  
Sbjct: 281 DRN---VNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYN 337

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V E   +     + G+ P    Y   I+G     RI EA  L   +   K   +    +
Sbjct: 338 DVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYS 397

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI G   S     A   F+ + + G  P + T + +   LCK    D+ +E++ ++   
Sbjct: 398 SLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFER 457

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ SYN++++  C S R+ EA  + +EM R+ L PD   YN L++  C+   +  A
Sbjct: 458 GLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHA 517

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
            +L++ M   G   ++ TYNIL   FS++  +
Sbjct: 518 WELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 27/245 (11%)

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSD 382
           SG   IDD V  AL   + ++ P  ++V FN ++    ++    T  +LSK +  R  + 
Sbjct: 54  SGFDAIDDAV--ALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITP 111

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
            +V +                +++++  C  G +  A+ V+  + ++G   +     ++M
Sbjct: 112 SIVTL----------------SILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIM 155

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  C    +R A +  D + A G   +  TY  LI+   ++G    A  L H M  + V 
Sbjct: 156 KGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVR 215

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLV 558
           P+   Y  +++GLC++  +  A ++++    + ++ DV     ++  F    C  G +  
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGF----CGLGQWRE 271

Query: 559 ATKLL 563
            T+LL
Sbjct: 272 VTRLL 276



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 25/269 (9%)

Query: 346 PRSAIVFFNFMIEKGRVPTLST----------------LSNLSKNLCKRNKS----DELV 385
           P++ I FFNF  +   +   +T                 S+  K   K+       D+ V
Sbjct: 4   PKNPIFFFNFGRKAAMLYAATTTRLRYAISKFSVFLRFFSDSQKQNAKKKSGFDAIDDAV 63

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            ++  L        +  +N+++  +        A  + ++M  +G+ P +   + L+   
Sbjct: 64  ALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCY 123

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A  +   +   G   N  T   ++      GE+  AL    +++ +G   D 
Sbjct: 124 CHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDE 183

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-- 563
            TY +L+ GLC+    + AFE+ +K     V     I +  +  LC+ G    A  L   
Sbjct: 184 VTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSD 243

Query: 564 ---RGLSSDLGHSDSHVILLKSLADAREV 589
              RG+  D+      +     L   REV
Sbjct: 244 VVGRGIDPDVFTYTCLIHGFCGLGQWREV 272


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 134/563 (23%), Positives = 245/563 (43%), Gaps = 12/563 (2%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+  L +L    ++  ++ +  ++    I LD S +  +I +L +    + A  +  E+ 
Sbjct: 126 YNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMA 185

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            +          +L+     +G ++ ALKM  +M   G   + +   V +  FC+  ++ 
Sbjct: 186 NHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVE 245

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + L  + EV   E       V    +++GFC+   V +A  ++D +  +   PD   Y  
Sbjct: 246 EALRFVLEVS--EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNS 303

Query: 267 VAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           +      +G  FE+ + +L++      +P T  Y   I  L  E  I  A +L  ++VS 
Sbjct: 304 LISGMCKLGE-FEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSK 362

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               D    N LI G   S +   A+  F  M  KG  P   T S L  +LC   +  E 
Sbjct: 363 GLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEA 422

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + + K + ++    +   YN ++  LC S R+ +A  +  +M+  G+      YN+L++ 
Sbjct: 423 LMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDG 482

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  A +L DQM   G   +  TYN L++ F  VG+IE A  +   M   G  PD
Sbjct: 483 LCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPD 542

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY +L+ GLC+   +  A ++        ++L     +  + +L  R       +L R
Sbjct: 543 IFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFR 602

Query: 565 GL--SSDLGHSDSHVILLKSLAD-AREVEMAIEHIKWIQESSPTMLQEISAELFAS--LS 619
            +   SD   + +H I+ + L +    ++ AI+    + E    +L E  +  F +  L 
Sbjct: 603 EMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKG--ILPEFPSFGFLAEGLC 660

Query: 620 SSSYPEPILLLLHALQEKCLDSE 642
           S S  + ++ L++ + EK   SE
Sbjct: 661 SLSMEDTLIELINMVMEKAQMSE 683



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 126/556 (22%), Positives = 239/556 (42%), Gaps = 72/556 (12%)

Query: 81  THSPLSYH-SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           TH PL  + ++L  L+ S   ++I ++LKQ+K +    +++ +  +I S       +   
Sbjct: 51  THHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLL 110

Query: 140 SVF-NEVKFN-------------CEDIGPEICNSLLAVLASDGYIDN------------- 172
            +  NE+ F               ED   ++   L + + ++G + +             
Sbjct: 111 KILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCK 170

Query: 173 ------ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
                 A+ M +EM++ G++   I F   +  F E   L   L M  ++      + N S
Sbjct: 171 AHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVS 230

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   ++++GFCK  RVEEA + + E+      PD + +  +   F  +G+V +   ++  
Sbjct: 231 V--KVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDF 288

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
             + G  P    Y   I G+          +LGE                          
Sbjct: 289 MIEKGFDPDVYTYNSLISGMC---------KLGEF------------------------- 314

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             AI     MI +   P   T + L   LCK N+ +   ++ ++L +     D+ ++N +
Sbjct: 315 EKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTL 374

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC S     A  + +EMK KG  PD   Y+ L+++ C E  L+ A  L  +M +SGC
Sbjct: 375 IQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGC 434

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N   YN LI    +   IE A  +F  M   GV+  + TY +L++GLC+   ++ A +
Sbjct: 435 ARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQ 494

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
           + ++ +   +   +   ++ +   CR G    A  +++ ++S+    D  ++  L+  L 
Sbjct: 495 LMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLC 554

Query: 585 DAREVEMAIEHIKWIQ 600
            A  V++A + ++ +Q
Sbjct: 555 RAGRVDVASKLLRSVQ 570



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 144/323 (44%), Gaps = 12/323 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++++++ L LS+  +    + +++K      D   Y  +I SL   +  ++A  +  E+
Sbjct: 370 TFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEM 429

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + +       + N+L+  L     I++A ++FD+M   GV  S++ +   I   C+N ++
Sbjct: 430 ESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRV 489

Query: 206 GQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +   ++D++     + +     S++       FC+   +E+A  ++  +    C+PD  
Sbjct: 490 EEASQLMDQMIMEGLKPDKFTYNSLLTY-----FCRVGDIEKAGDIVQTMASNGCEPDIF 544

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +       G V     +L+  +  G+    + Y   I  L + +R  E   L   +
Sbjct: 545 TYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREM 604

Query: 323 VSGKFTIDDDVLNALI--GSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +  K    D + + ++  G  +   P + AI F   M+EKG +P   +   L++ LC  +
Sbjct: 605 ME-KSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLS 663

Query: 380 KSDELVEVYKVLSANDYFTDMES 402
             D L+E+  ++      ++ E+
Sbjct: 664 MEDTLIELINMVMEKAQMSERET 686


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 211/493 (42%), Gaps = 45/493 (9%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  QPN     ++Y ++++ L    ++     +LKQ+       D+  Y  +I   ++  
Sbjct: 377 AGVQPN----KITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQH 432

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIG 191
           N ++AF + NE++     I P +    + +  L   G  + A  + ++M   G++ +   
Sbjct: 433 NKEEAFLLLNEMRKG--GISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFV 490

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   I  +C           L ++  REN   +      LII G     +++EA +  DE
Sbjct: 491 YAPLISGYCREGSFSLACETLKKM-TRENLTPDLYCYNSLII-GLSNVGKMDEAIEYYDE 548

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  +  +P+   Y  +   + + G++ + E +L +    G+ P      +FI   I+E  
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN-----DFIYAQILE-- 601

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
                        G F  D+      +  VSS            M+EKG +P       +
Sbjct: 602 -------------GYFKSDN------LEKVSST--------LKSMLEKGLMPDNRLYGIV 634

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
             NL         V V  V+  N    D   Y  ++S  C +  + +A G++ EM +KG+
Sbjct: 635 IHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGI 694

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
           +P +S YN+L++  C+ D +  A+ +++ +   G   N  TY  LI  + + G+I  A+ 
Sbjct: 695 EPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAID 754

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L++ ML +GVAPDA  Y+ L  G     +LQ A  +  + +     +  S  +T +   C
Sbjct: 755 LYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISS-FNTLVHGFC 813

Query: 552 RRGHFLVATKLLR 564
           +RG      K L 
Sbjct: 814 KRGKLQETVKFLH 826



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 179/427 (41%), Gaps = 5/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +++A K+ +EM   G   + + +   I   C    + +      E+   +  ++      
Sbjct: 259 LESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME--DYGLVPDGFTY 316

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             II+G CK  R ++A  +LDE+      P+ + Y  + + F   G+  E   ++K+   
Sbjct: 317 GAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSA 376

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
            GV P    Y   I GL    R+  A  + + +    +  D    N +I G +   +   
Sbjct: 377 AGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEE 436

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A +  N M + G  P + T S +   LC+  +S+    + + + A+    +   Y  ++S
Sbjct: 437 AFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLIS 496

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G    A   +++M R+ L PD+  YNSL+        +  A + +D+M   G   
Sbjct: 497 GYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQP 556

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  TY  LI  +S  G +E A +L H ML  G+ P+   Y  +LEG  +  NL+      
Sbjct: 557 NDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTL 616

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADA 586
              +   +M    +    + +L   GH   A  +L  +  +    DS +   L+     A
Sbjct: 617 KSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKA 676

Query: 587 REVEMAI 593
            ++E A+
Sbjct: 677 ADMEKAV 683



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 184/453 (40%), Gaps = 44/453 (9%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I  +CK + +E A KV++E+R   C  + + Y  +       G++ E     K+    G
Sbjct: 249 LIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYG 308

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           + P    Y   I GL    R  +AK L + +       +  V + LI G +   +   A 
Sbjct: 309 LVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAF 368

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN------ 404
                M   G  P   T  NL + LCK  +      + K ++   Y  D  +YN      
Sbjct: 369 KIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGH 428

Query: 405 -----------------------------VMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
                                        ++++ LC  G    A G++++M   GL P+ 
Sbjct: 429 LRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNA 488

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  L+   CRE     A +   +M     + +L  YN LI   S VG+++ A+  +  
Sbjct: 489 FVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDE 548

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILSTFMISL 550
           MLEKG  P+  TY  L+ G     NL+ A ++ ++ +N     +D + A+ +   F    
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610
             +    + + L +GL  D   +  + I++ +L+ +  ++ A+  +  I+++       I
Sbjct: 609 LEKVSSTLKSMLEKGLMPD---NRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLI 665

Query: 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
              L +    ++  E  + LL  + +K ++  I
Sbjct: 666 YGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 169/411 (41%), Gaps = 45/411 (10%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEV--KFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDE 179
           F+   LI G   + +FS+  E   K   E++ P++ C NSL+  L++ G +D A++ +DE
Sbjct: 489 FVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDE 548

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCK 238
           M  +G + +   +G  I  +     L +   +L ++    NS +N    I   I+ G+ K
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML---NSGLNPNDFIYAQILEGYFK 605

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
              +E+    L  +  +   PD   Y IV       G +     VL    K G+ P +  
Sbjct: 606 SDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLI 665

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I G      + +A  L + +            NALI G   S D   A   FN +I
Sbjct: 666 YGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII 725

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            KG  P   T + L    CK                                   +G +R
Sbjct: 726 CKGLPPNCVTYTTLIDGYCK-----------------------------------AGDIR 750

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +  EM  +G+ PD   Y+ L   C     L+ A  + ++M A G +  + ++N L+
Sbjct: 751 DAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYA-IISSFNTLV 809

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             F + G+++  ++  H M++K + P   T  +++ GL +   L  A  +F
Sbjct: 810 HGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIF 860



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%)

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
            FM   G  P + T S L +  CK    +   +V + +       ++ +YN ++  LC +
Sbjct: 232 GFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRA 291

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G + EA+G  +EM+  GL PD   Y +++   C+      AK L D+M  +G   N+  Y
Sbjct: 292 GAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVY 351

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + LI  F   G  + A ++   M   GV P+  TY +L+ GLC+   +  A  +  +
Sbjct: 352 STLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 89/184 (48%)

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
           L  V++ LS +D        +V+V     +GR+R+   V+  MK  GL P +   N L++
Sbjct: 157 LSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLK 216

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              R D L    K+   M  +G S ++ TY+ LI  + +V ++E A ++   M E G + 
Sbjct: 217 DLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSL 276

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  TY +L+ GLC+   ++ AF    +  ++ ++         +  LC+RG    A  LL
Sbjct: 277 NVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLL 336

Query: 564 RGLS 567
             +S
Sbjct: 337 DEMS 340



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 95/213 (44%)

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M + G  P+L   + L K+L + +  D L +V   +       D+ +Y+ ++   C   
Sbjct: 198 LMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVR 257

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L  A  V++EM+  G   +V  YN+L+   CR   +  A     +M   G   +  TY 
Sbjct: 258 DLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYG 317

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            +I+   + G  + A  L   M   G+ P+   Y++L++G  ++ N   AF++  +    
Sbjct: 318 AIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA 377

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            V   +      +  LC+ G    A+++L+ ++
Sbjct: 378 GVQPNKITYDNLIRGLCKLGRMGRASRILKQMT 410



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 47/305 (15%)

Query: 35  EQTLHQLGLRDSLSPS--LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILK 92
           EQ LHQ+ L   L+P+  + A+++  Y  + +   +     +  +         Y  ++ 
Sbjct: 578 EQLLHQM-LNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIH 636

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK------ 146
           +LS S  + A  SVL  ++ N +  DS +Y  +I    +  + +KA  + +E+       
Sbjct: 637 NLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEP 696

Query: 147 ------------------------FN---CEDIGPEICNSLLAVLASDGY-----IDNAL 174
                                   FN   C+ + P   N +      DGY     I +A+
Sbjct: 697 GISCYNALIDGFCKSDDISHARNIFNSIICKGLPP---NCVTYTTLIDGYCKAGDIRDAI 753

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            +++EM   GV      + V       +  L Q L + +E+  R  ++I+       ++H
Sbjct: 754 DLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNT---LVH 810

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GFCK  +++E  K L  +  ++  P  +    +       G + E   +  + ++   + 
Sbjct: 811 GFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASH 870

Query: 295 RTNDY 299
           R  D+
Sbjct: 871 RDTDH 875


>gi|125539212|gb|EAY85607.1| hypothetical protein OsI_06979 [Oryza sativa Indica Group]
          Length = 538

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 193/420 (45%), Gaps = 16/420 (3%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG-----PEI-C-NSLLAVLASDGYIDNAL 174
           Y   + +L    +  +  +VF+E+K+   D G     P + C N+L+  LA  G    AL
Sbjct: 55  YNVAMKALALAGDVDEVVAVFSELKWTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 114

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           K FDEM   GV  +     + I      ++      ++ +     +     ++IA     
Sbjct: 115 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIA----- 169

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G C+  +V EA+ VLD +  + C+P    Y  + + +   G + E ++++ +  +LG  P
Sbjct: 170 GLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 229

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   I  L  + +  E +++     +  +       N  + G       + A+   
Sbjct: 230 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 289

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M+ +G  PT  T S L   LC  ++  + + + +  +   ++  + +YN ++S LC  
Sbjct: 290 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 349

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+ R    ++ +M +KG++P+   +N L+ + C       AK L   + + G + N+ TY
Sbjct: 350 GKWRGIMKLLTDMIKKGIEPNTRTFNILIRSLCVGGKSSLAKSL---IHSQGFAANVVTY 406

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           NIL+  F   G++  A RL   M EK +APD  TYT +++GLC+E    AA   F KS+ 
Sbjct: 407 NILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLT 466



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 38/250 (15%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+  G  P  S+ + L K   +R++ D     ++++  +    D+ +Y+ +++
Sbjct: 113 ALKAFDEMLASGVAPNASSQNILIKMHARRSEFDL---AWELIHKSGVEPDVGTYSTLIA 169

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G++ EA+GV+  M  K   P V  Y  +++A CR+  +  AK L  +M   GC  
Sbjct: 170 GLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 229

Query: 469 NLKTYNILI------SKFSEV-----------------------------GEIEGALRLF 493
           N+ TYN+LI       KF EV                             G+ + AL L 
Sbjct: 230 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 289

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             ML +G+ P A T++ LL  LC  + L  A  +  +S            +T M SLC  
Sbjct: 290 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 349

Query: 554 GHFLVATKLL 563
           G +    KLL
Sbjct: 350 GKWRGIMKLL 359


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 136/619 (21%), Positives = 248/619 (40%), Gaps = 133/619 (21%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           +LAL +F   +   +F H+PL+Y  +++ L+  R+++ +  +L+Q+K+  I+    ++  
Sbjct: 57  TLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFIS 116

Query: 125 IIPSLIQGKNTQKA-------------------------------FSVFNEVKFNCEDIG 153
           +I S  +  ++++A                               F + N +  N +  G
Sbjct: 117 VIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDG 176

Query: 154 PE----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            E      N LL  L  +  +D A K+  EMS +G +   + +   I   C   KLG+V 
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC---KLGKV- 232

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
               E R+   S      +   +I+G CK    EEAF++LDE+  +   P+ I+Y  +  
Sbjct: 233 ---KEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN 289

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-------------------- 309
                G+V     VL K    G +P  + +   I G  ++                    
Sbjct: 290 ALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP 349

Query: 310 ---------RRICEAKELGEVI-VSGKFTIDDDVLN-----ALI-GSVSSIDPRSAIVFF 353
                      +C  + LG+ + V  +  I+    N     ALI G   + D   A   +
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVW 409

Query: 354 NFMIEKGRVPTLS-----------------------------------TLSNLSKNLCKR 378
           N+MI  G  P +                                    T +   K LC  
Sbjct: 410 NWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGS 469

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + D  ++V+  +  +  F +  +YN ++  L    R  EA+G++++M+ +G++ ++  Y
Sbjct: 470 GRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTY 529

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+++   C   +L  A +L  +M   G   +  T NI+I  + + G++  A++L   +  
Sbjct: 530 NTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSA 589

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
               PD   YTSL+ G+C    ++ A     +      ML+  I               V
Sbjct: 590 GKWHPDIIAYTSLISGICTHIGVEEAIVYLRR------MLSEGISPN------------V 631

Query: 559 AT--KLLRGLSSDLGHSDS 575
           AT   L+R L S++GHS +
Sbjct: 632 ATWNVLVRHLFSNMGHSGA 650



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 19/189 (10%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G   +A      M+   + P V  YN +++A   E+  +    ++  M   G   N+ T
Sbjct: 124 AGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFT 183

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV---FN 529
           YNIL+    +   ++GA +L   M  KG  PD  +YT+L+  LC+   ++ A E+   F 
Sbjct: 184 YNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT 243

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
            SV         + +  +  +C+   F  A +LL     +G+  ++    S+  ++ +L+
Sbjct: 244 PSV--------PVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV---ISYTTIINALS 292

Query: 585 DAREVEMAI 593
           DA  VE+++
Sbjct: 293 DAGNVELSL 301


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/518 (21%), Positives = 219/518 (42%), Gaps = 39/518 (7%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSR-----------QINAIDSV--------- 106
           AL FF W +++  F H+  S+ ++L  LS  R            +N  D+          
Sbjct: 73  ALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADA 132

Query: 107 ---LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
              +++    ++ L    Y F + SL +   T+    V++++    + + P+    N+++
Sbjct: 133 IQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQ--DGLLPDTVTYNTMI 190

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-----LDEVR 216
                +G +  A + F  +   G+E  T      +  +C   +L +   +     L   +
Sbjct: 191 KSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQ 250

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           + E S         ++I G C+ K V EA  +   ++   C P+  A+  +       G 
Sbjct: 251 RNEYSY-------TILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGR 303

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V +  ++     + GV P    Y   I+G     R+ +A ++ E++       DD   N 
Sbjct: 304 VGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNT 363

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           LI  +       A    N  +++G  PT+ T +NL    C   K D+ + +   + ++  
Sbjct: 364 LIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 423

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D++ +  +++ L    RL+EA  ++ E+   GL P+V  Y S+++  C+   +  A +
Sbjct: 424 KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALE 483

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +   M   GC  N  TYN L+    +  ++  A+ L   M + G+ P+  TYT+LL+G C
Sbjct: 484 VLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC 543

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            E +   AF +F     + +       +    +LC+ G
Sbjct: 544 DEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG 581



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 192/462 (41%), Gaps = 9/462 (1%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  Q     S ++Y++++   S   ++N    + + ++ N    D   Y  +I  L   K
Sbjct: 313 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 372

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             +    + N VK   E   P +    +L+         D+AL+M ++M     +     
Sbjct: 373 TEEAEELLNNAVK---EGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG  I    +  +L +   +L+E+    N ++   +    II G+CK  +V+ A +VL  
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISA--NGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +    C+P+   Y  +         + +   +L K +K G+ P    Y   + G   E  
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
              A  L E++       D+     L  ++       A   ++F++ KG   T    + L
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG--RAEEAYSFIVRKGVALTKVYYTTL 605

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                K   +D    + + +       D  +Y+V++  LC   RL EA  ++ +M  +G+
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGI 665

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
              +  Y  L++   RE     AK+++++M +SG   +  TY + I+ + + G +E A  
Sbjct: 666 KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 725

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           L   M  +GVAPD  TY  L++G      +  AF    + V 
Sbjct: 726 LILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/548 (19%), Positives = 218/548 (39%), Gaps = 67/548 (12%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +  FT + +++ +++    ++ + +    +  ++  +K  LD  V+  +I SLI+    +
Sbjct: 385 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLK 444

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  + NE+  N   + P +    S++      G +D AL++   M   G + +   +  
Sbjct: 445 EAKELLNEISAN--GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNS 502

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   ++ KL + +++L +++K  + +I   +    ++ G C     + AF++ + +  
Sbjct: 503 LMYGLVKDKKLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 560

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              KPD  AY ++ +     G   E    + +K   GVA     Y   I G         
Sbjct: 561 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYTTLIDGF-------- 609

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                                       + D   A      MI++G  P   T S L   
Sbjct: 610 ------------------------SKAGNTD--FAATLIERMIDEGCTPDSYTYSVLLHA 643

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK+ + +E + +   +S       + +Y +++  +   G+   A  +  EM   G  P 
Sbjct: 644 LCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPS 703

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            + Y   + + C+E  L  A+ L  +M   G + ++ TYNILI     +G I+ A     
Sbjct: 704 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763

Query: 495 NMLEKGVAPDATTYTSLLE----------------GLCQETNLQAAFEVFNKSVNHDVML 538
            M+     P+  TY  LL+                G+     L   +++  + V H +  
Sbjct: 764 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 823

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
             +  S+ +   C+ G    A  LL     +GLS +    D + +L+K   D +  E A+
Sbjct: 824 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPN---EDIYTLLIKCCCDTKFFEKAL 880

Query: 594 EHIKWIQE 601
             +  + E
Sbjct: 881 SFVSIMSE 888



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 109/498 (21%), Positives = 202/498 (40%), Gaps = 59/498 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+     S +++    VLK ++ +    ++  Y  ++  L++ K   KA ++   
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL-- 520

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + I P +    +LL     +   DNA ++F+ M   G++     + V     C+ 
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 203 AKLGQVLS----------------MLDEVRKRENSMINGSVIAVLI-------------- 232
            +  +  S                ++D   K  N+    ++I  +I              
Sbjct: 581 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +H  CK KR+ EA  +LD++ +R  K    AY I+ +E    G     + +  +    G 
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI---GSVSSIDPR 347
            P    Y  FI     E R+ +A++L  ++   +  +  DV+  N LI   G +  ID  
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDL--ILKMEREGVAPDVVTYNILIDGCGHMGYID-- 756

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN----KSDELVEVYKVLSANDYFTDME-- 401
            A      M+     P   T   L K+L K N    +S +   ++ ++  +  +  +E  
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 402 ----------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                     +Y+ +++  C +GRL EA  ++  M  KGL P+   Y  L++ CC     
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 876

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A      M   G    L++Y +L+      G+ E    LF ++LE G   D   +  L
Sbjct: 877 EKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKIL 936

Query: 512 LEGLCQETNLQAAFEVFN 529
            +GL +   +   F++ +
Sbjct: 937 NDGLLKAGYVDICFQMLS 954



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 2/220 (0%)

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           ++L + + ++ +  VY  L  +    D  +YN M+   C  G L  A+   + +   GL+
Sbjct: 156 RSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLE 215

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+    N+L+   CR   LR A  L+  M   GC  N  +Y ILI    E   +  AL L
Sbjct: 216 PETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVL 275

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  M   G +P+   +T L+ GLC+   +  A  +F+    + V+ +    +  ++   +
Sbjct: 276 FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSK 335

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            G    A K+   +  +  H D  ++  L+  L D +  E
Sbjct: 336 LGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEE 375


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 223/477 (46%), Gaps = 15/477 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           ++ ++K L  + +        K V   K T D   +  ++ +L++    ++AF +F  + 
Sbjct: 68  HNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH 127

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            + + + P +    +++  L  DG +D A+++ D M+  G   + I + V +   C+  +
Sbjct: 128 TSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDFIA 263
             +  ++L E+ +R        ++   +++G CK +R++EA +++ +L IR  C P  + 
Sbjct: 187 TDKGFTLLQEMTRR--GFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYPTVVT 243

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + E F     V     +++   + G  P   +Y   I GL  + R+ +A+ L + +V
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 324 SGKFTIDDDVLNALIGSVSS---IDP----RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + +   D    + +I  +     +D      +A      M + G  P   T + + + LC
Sbjct: 304 AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  KS + + + + +  ++   D+ S+++++  LC S  L  AY +   M  +   P+  
Sbjct: 364 RARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPV 423

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y +L++   +   +  A ++++ M  S   G + TYN ++     VG IE A+R+   M
Sbjct: 424 AYAALIDGLSKGGEVDKAVRVFELMVESFRPG-VATYNSVLDGLCGVGRIEEAVRMVEGM 482

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           + K   PD  +Y +L+ GLC+ + ++ A+E+F         +   + +  +  LC++
Sbjct: 483 IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 42/349 (12%)

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           GQ + +  E R   N    GS     +IHG CK  ++++A+++LDE+R R          
Sbjct: 15  GQAVQLFREERCVPNEFTYGS-----LIHGLCKAGKLDQAYELLDEMRDR---------- 59

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
                                    G+ P    +   I GL    R  +A    + +   
Sbjct: 60  -------------------------GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGT 94

Query: 326 KFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDE 383
           K T D    N L+ + V S     A   F  M    + +P + T + +   LCK  K D 
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDR 154

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +E+  +++      ++ +Y+V+V  LC +GR  + + ++QEM R+G  PDV  YN+L+ 
Sbjct: 155 AIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLN 214

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+   L  A +L   M  SGC   + TYN L+  F    +++ A RL   M E+G  P
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           D   Y +++ GLC++  L  A  +  + V    +      ST +  LC+
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 167/414 (40%), Gaps = 46/414 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N  L +L   G    A+++F E      EF+   +G  I   C+  KL Q   +LDE+R 
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFT---YGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   +  G  +   +I G CK  R  +A      +   +C PD I + I+ +     G V
Sbjct: 59  R--GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 278 FEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
            E   + +         P    Y   I GL  + ++  A EL                  
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL------------------ 158

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                            + M E G  P + T S L + LCK  ++D+   + + ++   +
Sbjct: 159 ----------------LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  YN +++ LC S RL EA  ++Q M R G  P V  YNSLME  CR   +  A +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   M   GC  ++  YN +I+       ++ A  L   M+     PD  TY+++++GLC
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322

Query: 517 Q------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +      +  L+AA E+                +  +  LCR      A  LLR
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 213/499 (42%), Gaps = 21/499 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +     +A+ + +E++      G  + N ++  L   G   +AL  F  ++
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
                   I F + +    ++ ++ +   + + +      + N  V    +I+G CK  +
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPN-VVTYTTVINGLCKDGK 151

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           ++ A ++LD +    C P+ I Y ++ E     G   +   +L++  + G  P    Y  
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 302 FILGLIVERRICEAKELGEVIV-SGKF--TIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
            + GL   RR+ EA EL ++++ SG +   +  + L  L      +D   A      M E
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVD--RAFRLIQVMSE 269

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--- 415
           +G  P +   + +   LC+  + D+   + K + A     D+ +Y+ ++  LC   R   
Sbjct: 270 RGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDA 329

Query: 416 ---LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
              L  A  +++ MK+ G  P+   Y  ++E  CR    + A  L  +M  S    +L +
Sbjct: 330 DWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS 389

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA---FEVFN 529
           ++++I    +  +++ A ++F  M E+   P+   Y +L++GL +   +  A   FE+  
Sbjct: 390 FSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           +S    V    S+L      LC  G    A +++ G+       D  S+  L++ L    
Sbjct: 450 ESFRPGVATYNSVLD----GLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 588 EVEMAIEHIKWIQESSPTM 606
            VE A E  + ++     M
Sbjct: 506 CVEEAYELFQAVEAKGFAM 524



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/251 (16%), Positives = 108/251 (43%), Gaps = 13/251 (5%)

Query: 85  LSYHSILKSLSLSRQINA------IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           ++Y +I+  L    +++A         +L+ +K      ++  Y  +I  L + + +Q+A
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 139 FSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            ++   +  +  ++ P++ +   ++  L     +D A K+F  MS R  + + + +   I
Sbjct: 372 LALLRRMIDS--EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALI 429

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
               +  ++ + + + + + +   S   G      ++ G C   R+EEA ++++ +  +E
Sbjct: 430 DGLSKGGEVDKAVRVFELMVE---SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKE 486

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD  +Y  +      +  V E   + +     G A     Y   +  L  ++R+ +A 
Sbjct: 487 CFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546

Query: 317 ELGEVIVSGKF 327
            +   ++   +
Sbjct: 547 GVANKLIEAGY 557


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 229/537 (42%), Gaps = 73/537 (13%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY- 87
           KW P  E+ L  L L+  +   LV  V+   +    ++ + FF WA ++ NF H   S+ 
Sbjct: 76  KWGPDAEKALEVLKLK--VDHRLVHEVLK--IDVEINVKIQFFKWAGKRRNFEHDSSSFM 131

Query: 88  ---HS--------------------------------ILKSLSLSRQINAIDSVLKQVKV 112
              HS                                I+K L  ++ +N   SV  Q+K 
Sbjct: 132 ALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKG 191

Query: 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDG 168
            K    ++ Y  +I  L Q  + +K   ++NE+   C D    P+    ++L++     G
Sbjct: 192 RKCKPAATTYNSMILMLKQEGHLEKVHEIYNEM---CNDGNCFPDTVTYSALISAFGKLG 248

Query: 169 YIDNALKMFDEMSHRGV----EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           + D+A+++FDEM   G+    +  T   G++        KL +V   LD +++ ++    
Sbjct: 249 HYDSAIRLFDEMKENGLYPTAKIYTTLLGIYF-------KLDKVEKALDVIKEMKDK--- 298

Query: 225 GSVIAVLI----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
           G  + V      I G  K  RV++A++V  ++    CKPD +   ++     ++G V   
Sbjct: 299 GCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVV---LINSLINILGKVGRL 355

Query: 281 EVVLKKKRKL---GVAPRTNDYREFILGLI-VERRICEAKELGEVIVSGKFTIDDDVLNA 336
           EV LK  RK+      P    Y   I  L   +    EA    E +            + 
Sbjct: 356 EVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSI 415

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G   +     A++    M EKG  P  +   +L  +L K  + +   E++  L  N 
Sbjct: 416 LIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENC 475

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
             +    Y VM+      GRL EA  +  EM++ G  PDV  YN+LM    R  ++  A+
Sbjct: 476 GHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQ 535

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            L   M  +GCS +L ++NI+++  +  G  + A+ +F  M    + PDA +Y ++L
Sbjct: 536 SLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVL 592



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSKNLCKRNKSDELVEVY-KVLSA 393
           L+G    ++ ++  VF+     KGR   P  +T +++   L +    +++ E+Y ++ + 
Sbjct: 172 LLGKAKMVN-KALSVFYQI---KGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCND 227

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
            + F D  +Y+ ++S     G    A  +  EMK  GL P    Y +L+    + D +  
Sbjct: 228 GNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEK 287

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  +  +M   GC+  + TY   I    + G ++ A R+F +M++ G  PD     SL+ 
Sbjct: 288 ALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLIN 347

Query: 514 GLCQETNLQAAFEVFNK 530
            L +   L+   ++F K
Sbjct: 348 ILGKVGRLEVTLKLFRK 364



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 353 FNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           +N M   G   P   T S L     K    D  + ++  +  N  +   + Y  ++    
Sbjct: 221 YNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYF 280

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
              ++ +A  VI+EMK KG    V  Y   ++   +   +  A +++  M   GC  ++ 
Sbjct: 281 KLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVV 340

Query: 472 TYNILISKFSEVGEIEGALRLFHNM--------------------------------LEK 499
             N LI+   +VG +E  L+LF  M                                 EK
Sbjct: 341 LINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEK 400

Query: 500 ----GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
               G+AP + TY+ L++G C+   ++ A  +  +          +   + + SL +   
Sbjct: 401 MKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKR 460

Query: 556 FLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIE 594
           +  A +L   L  + GHS + V  +++K       +  A++
Sbjct: 461 YEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVD 501



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +  AL +F+ +  +   P ATTY S++  L QE +L+   E++N+  N       ++  +
Sbjct: 179 VNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYS 238

Query: 546 FMIS-LCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMAIEHIKWIQES 602
            +IS   + GH+  A +L   +  +  +  +  +  LL       +VE A++ IK +++ 
Sbjct: 239 ALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDK 298

Query: 603 SPTM 606
             T+
Sbjct: 299 GCTL 302


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/559 (22%), Positives = 241/559 (43%), Gaps = 51/559 (9%)

Query: 29   KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
            KW P  E+ L  L LR  +   LV  V+   +  +  + + FF WA+++ N+ H   +Y 
Sbjct: 1062 KWGPDAEKALEVLMLR--VDHWLVREVMKTDVGVN--VKMQFFRWAAKRRNYEHDTSTYM 1117

Query: 89   SILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
            +++  L +  Q   +  +++++  N I  +  +    ++  L   K  ++A ++F ++K 
Sbjct: 1118 ALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKT 1177

Query: 148  -NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS-TIGFGVFIWKFCENAKL 205
              C+ I  +  NS++ +L  +G  +   ++++EMS  G  F  T+ +   I  FC+  + 
Sbjct: 1178 RKCQPIA-QAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRR 1236

Query: 206  GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               + +L+E++  E  M   + I  ++I  F K      A  + +E+R + C+PD   Y 
Sbjct: 1237 DSAIQLLNEMK--EIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 1294

Query: 266  IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
             +       G + E      + ++ G  P T      I  L    R+ +A +L + + + 
Sbjct: 1295 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 1354

Query: 326  KFTIDDDVLNALIGSV-------------------SSIDPRS------------------ 348
            +        N +I ++                   S I P S                  
Sbjct: 1355 RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEK 1414

Query: 349  AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            A++    M EKG  P  +   +L   L K  + D   E+++ L  N   +    Y VM+ 
Sbjct: 1415 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 1474

Query: 409  FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             L  +GRL +A  +  EM + G  PDV  YN+LM    R  +L  A     +M   GC  
Sbjct: 1475 HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP 1534

Query: 469  NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            ++ +YNI+++  ++ G    A+ +  NM +  V PD  +Y ++L  L      + A ++ 
Sbjct: 1535 DINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLM 1594

Query: 529  NK----SVNHDVMLARSIL 543
             +       +D++   SIL
Sbjct: 1595 KEMNTLGFEYDLITYSSIL 1613



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 162/383 (42%), Gaps = 43/383 (11%)

Query: 105  SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
            S+ ++++      D   Y  +I  L +     +A+  F E++   E   P+    N+++ 
Sbjct: 1276 SLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR--EGCRPDTVFMNNMIN 1333

Query: 163  VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-AKLGQVLSMLDEVRKRENS 221
             L   G +D+A+K+F EM       S + +   I    E+ ++  +V S  +  R +E+ 
Sbjct: 1334 FLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFE--RMKESG 1391

Query: 222  MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
            +   S    ++I GFCK  R+E+A  +L+E+  +   P   AY  + +            
Sbjct: 1392 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID------------ 1439

Query: 282  VVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS 340
              L K ++  +A                   CE  +EL E   S    +   ++  L G 
Sbjct: 1440 -ALGKAKRYDLA-------------------CELFQELKENCGSSSARVYAVMIKHL-GK 1478

Query: 341  VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
               +D   AI  F+ M + G  P +   + L   L +    DE +   + +  +    D+
Sbjct: 1479 AGRLD--DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDI 1536

Query: 401  ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             SYN++++ L  +G    A  ++  MK+  + PDV  YN+++ A     +   A KL  +
Sbjct: 1537 NSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKE 1596

Query: 461  MFASGCSGNLKTYNILISKFSEV 483
            M   G   +L TY+ ++    +V
Sbjct: 1597 MNTLGFEYDLITYSSILEAIGKV 1619



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 108/263 (41%), Gaps = 5/263 (1%)

Query: 85   LSYHSILKSLSLSR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            ++Y++I+K+L  S+ + + + S  +++K + I+  S  Y  +I    +    +KA  +  
Sbjct: 1361 VTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 1420

Query: 144  EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
            E+        P    SL+  L      D A ++F E+       S   + V I    +  
Sbjct: 1421 EMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAG 1480

Query: 204  KLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +L   ++M DE+ K   +     V A   ++ G  +   ++EA   +  ++   C PD  
Sbjct: 1481 RLDDAINMFDEMNKLGCA---PDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 1537

Query: 263  AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +Y I+       G       +L   ++  V P    Y   +  L       EA +L + +
Sbjct: 1538 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597

Query: 323  VSGKFTIDDDVLNALIGSVSSID 345
             +  F  D    ++++ ++  +D
Sbjct: 1598 NTLGFEYDLITYSSILEAIGKVD 1620


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 212/490 (43%), Gaps = 50/490 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     D  + + ++M   G+  +   + + I  FC  +++   L++L ++ K
Sbjct: 14  NKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMK 73

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S++  S +    ++G+C GKR+ +A  ++D++     +PD I +  +     L  
Sbjct: 74  LGYEPSIVTLSSL----LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL     I  A  L   + + K   D  + N
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I S+        A+  F  M  KG  P + T S+L   LC   +  +  ++   +   
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 249

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ ++N ++      G+  EA  +  +M ++ +DPD+  YNSL+   C  D L  A
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEV------------------------------- 483
           K++++ M +  C  +L TYN LI  F +                                
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369

Query: 484 ----GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G+ + A ++F  M+  GV PD  TY+ LL+GLC    L+ A EVF+     ++ L 
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429

Query: 540 RSILSTFMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
             I +T +  +C+ G       L  +  L+G+  ++    ++  ++  L   R ++ A  
Sbjct: 430 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV---TYNTMISGLCSKRLLQEAYA 486

Query: 595 HIKWIQESSP 604
            +K ++E  P
Sbjct: 487 LLKKMKEDGP 496



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A+ + D M  RG + + + +GV +   C+   +    ++L+   K E + I   V+    
Sbjct: 134 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN---KMEAAKIEADVVIFNT 190

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   CK + V++A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RS 348
           + P    +   I   + E +  EA++L + ++  K +ID D+   N+LI      D    
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMI--KRSIDPDIFTYNSLINGFCMHDRLDK 308

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F FM+ K   P L T + L K  CK  + ++  E+++ +S      D  +Y  ++ 
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G    A  V ++M   G+ PD+  Y+ L++  C    L  A +++D M  S    
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++  Y  +I    + G+++    LF ++  KGV P+  TY +++ GLC +  LQ A+ + 
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 488

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            K      +      +T + +  R G    + +L+R + S
Sbjct: 489 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/506 (21%), Positives = 213/506 (42%), Gaps = 66/506 (13%)

Query: 42  GLRDSLSPSLVARVIN----PYLLTHHSLALGFF--NWASQ-------------QPNFTH 82
           G R S + +LV +++     P  +T  +L  G F  N AS+             QPN   
Sbjct: 93  GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL-- 150

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
             ++Y  ++  L     I+   ++L +++  KI  D  ++  II SL + ++   A ++F
Sbjct: 151 --VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E++   + I P +   +SL++ L S G   +A ++  +M  + +  + + F   I  F 
Sbjct: 209 KEME--TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 266

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +  K  +   + D++ KR    I+  +     +I+GFC   R+++A ++ + +  ++C P
Sbjct: 267 KEGKFVEAEKLHDDMIKRS---IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 323

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y  + + F     V +   + ++    G+   T  Y   I GL  +          
Sbjct: 324 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG--------- 374

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                    D  +A   F  M+  G  P + T S L   LC   
Sbjct: 375 -------------------------DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +EV+  +  ++   D+  Y  M+  +C +G++ + + +   +  KG+ P+V  YN
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   C + LL+ A  L  +M   G   +  TYN LI      G+   +  L   M   
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 529

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAF 525
               DA+T   L+  +  +  L  +F
Sbjct: 530 RFVGDAST-IGLVANMLHDGRLDKSF 554



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 98/213 (46%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M++   +P++   + L   + K  K D ++ + + +       ++ +YN++++  C   +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A  ++ +M + G +P +   +SL+   C    +  A  L DQM   G   +  T+  
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI       +   A+ L   M+++G  P+  TY  ++ GLC+  ++  AF + NK     
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +     I +T + SLC+  H   A  L + + +
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 184/406 (45%), Gaps = 25/406 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A     G +D A ++   M    V      +   I   C+  ++G+ LS+LD++  
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R  + S++  +V+    +   CK     +A +VLDE+R + C P+ + Y ++       G
Sbjct: 174 RGCQPSVVTYTVL----LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V +    L +    G  P T  Y   + GL   +R  + +EL   ++      ++   +
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 336 ALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVY 388
            L+      G V       AI     M   G     +TL N+  N +CK+ + D+  +  
Sbjct: 290 MLVRFFCRGGMVE-----RAIQVLEQMSGHGCAAN-TTLCNIVINTICKQGRVDDAFQFL 343

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     D  SY  ++  LC + R  +A  +++EM RK   P+   +N+ +   C++
Sbjct: 344 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 403

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            L+  A  L +QM   GC  N+ TYN L++ F   G ++ AL LF++M  K   P+  TY
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITY 460

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           T+LL GLC    L AA E+  + +  D        +  +   C++G
Sbjct: 461 TTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG 506



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/518 (22%), Positives = 213/518 (41%), Gaps = 39/518 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I++ L    ++    S+L  +           Y  ++ ++ +     +A  V +E+
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   +   P I   N ++  +  +G +D+A +  + +S  G +  T+ +   +   C   
Sbjct: 207 R--AKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 264

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +   V  +  E+ ++ N M N  V   +++  FC+G  VE A +VL+++    C  +   
Sbjct: 265 RWEDVEELFAEMMEK-NCMPN-EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             IV       G V +    L      G +P T  Y   + GL    R  +AKEL + +V
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 324 SGKFTIDDDVLNA----------------LIGSVSSIDPRSAIVFFNFMIE----KGRV- 362
                 ++   N                 LI  +S       IV +N ++     +GRV 
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 363 ------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                       P   T + L   LC   + D   E+   +   D   ++ ++NV+VSF 
Sbjct: 443 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G + EA  ++++M   G  P++  YN+L++    +     A +L   + ++G S ++
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDI 562

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ +I   S    +E A+++FH + + G+ P A  Y  +L  LC+  N   A + F  
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            V++  M       T +  L           LLR L S
Sbjct: 623 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCS 660



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 4/337 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C+  R  +A +VL          D  AY  +   +   G +   +   +    + 
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQL---DAARRLIASMP 140

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAI 350
           VAP    Y   I GL    R+ EA  L + ++             L+ +V  S     A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + M  KG  P + T + +   +C+  + D+  E    LS+  +  D  SY  ++  L
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   +  EM  K   P+   ++ L+   CR  ++  A ++ +QM   GC+ N 
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              NI+I+   + G ++ A +  +NM   G +PD  +YT++L+GLC+    + A E+  +
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            V  +        +TF+  LC++G    AT L+  +S
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/525 (18%), Positives = 206/525 (39%), Gaps = 60/525 (11%)

Query: 30  WTPLLEQTLHQLGLRDSLS--PSLVARVINPYLLTHHSLALG------------FFNWAS 75
           +T LLE      G   ++     + A+   P ++T++ +  G            F N  S
Sbjct: 183 YTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 242

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
               F    +SY ++LK L  +++   ++ +  ++       +   +  ++    +G   
Sbjct: 243 SY-GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  V  ++  +       +CN ++  +   G +D+A +  + M   G    TI +   
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 196 IWKFCENAKLGQVLSMLDE-VRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           +   C   +      +L E VRK    N +   + I +L     C+   +E+A  +++++
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL-----CQKGLIEQATMLIEQM 416

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
               C+ + + Y  +   F + G V   +  L+    +   P T  Y   + GL    R+
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRV---DSALELFYSMPCKPNTITYTTLLTGLCNAERL 473

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
             A EL                                     M++K   P + T + L 
Sbjct: 474 DAAAEL----------------------------------LAEMLQKDCAPNVVTFNVLV 499

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              C++   DE +E+ + +  +    ++ +YN ++  +       EA  ++  +   G+ 
Sbjct: 500 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVS 559

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD+  Y+S++    RED +  A K++  +   G       YN ++    +    +GA+  
Sbjct: 560 PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDF 619

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           F  M+  G  P+  TY +L+EGL  E  L+   ++  +  +  V+
Sbjct: 620 FAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 35/247 (14%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS---------- 408
           +G  P +   + L +NLC+R ++ +   V +    +    D+ +YN +V+          
Sbjct: 72  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131

Query: 409 ----------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                  LC  GR+ EA  ++ +M  +G  P V  Y  L+EA C
Sbjct: 132 ARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +      A ++ D+M A GC+ N+ TYN++I+     G ++ A    + +   G  PD  
Sbjct: 192 KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 251

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +YT++L+GLC     +   E+F + +  + M         +   CR G    A ++L  +
Sbjct: 252 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311

Query: 567 SSDLGHS 573
           S   GH 
Sbjct: 312 S---GHG 315



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 3/245 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + + + LC R +  E + +   +        + +Y V++  +C S    +A  V
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG  P++  YN ++   CRE  +  A++  +++ + G   +  +Y  ++     
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
               E    LF  M+EK   P+  T+  L+   C+   ++ A +V  +   H      ++
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK-WI 599
            +  + ++C++G    A + L  + S     D  S+  +LK L  A   E A E +K  +
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 600 QESSP 604
           +++ P
Sbjct: 383 RKNCP 387



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  ++     +G  PDV     L+   CR      A ++      SG + ++  YN 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++ +   G+++ A RL  +M    VAPDA TYT ++ GLC    +  A  + +  ++  
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
              +    +  + ++C+   F  A ++L
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVL 203


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 200/485 (41%), Gaps = 70/485 (14%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N +L+VLA      +AL ++  M HR  V  +T  FGV     C   +  + L++L  + 
Sbjct: 143 NVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMA 202

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           +  +  +  +V+   +IH  C    V EA  +L+E+ +  C  D   +  V      +G 
Sbjct: 203 R--HGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGR 260

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGL------------------------------ 306
           V E   ++ +    G  P    Y   + GL                              
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 320

Query: 307 -IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPT 364
            + E ++ EA EL E +       D    + L+  +  +    SA+     M +KG  P 
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPN 380

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + T + +  + CK    D+   + + +SA     + + YN M+  LC  GR+ EA G+IQ
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440

Query: 425 EMKRKGLDPDVSFYNSLMEACCRED------------------------------LLRPA 454
           EM+ +G +PD+  YN+++   C  +                              LLR  
Sbjct: 441 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 455 K-----KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
           +     +L  +M   GCS ++ +YN LI    + G ++ +L L   M EKG+ P+  +Y 
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            L+  LC+E  ++ A E+  + +N  +       +T +  LC+ G    A  LL  L ++
Sbjct: 561 ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 620

Query: 570 LGHSD 574
             H D
Sbjct: 621 NVHPD 625



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/499 (20%), Positives = 209/499 (41%), Gaps = 30/499 (6%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           H+ AL  +     +     +  ++    ++L    + N   ++L+ +  +    D+ +Y+
Sbjct: 155 HADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQ 214

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +I +L       +A ++ NE+            + ++  +   G +  A ++ D M  +
Sbjct: 215 TVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE----NSMINGSVIA---------- 229
           G     + +G  +   C   +  +  +ML  V +      N++I G +            
Sbjct: 275 GCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELY 334

Query: 230 ---------------VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                           +++HG CK  R+  A ++L E+  +   P+ + Y IV   F   
Sbjct: 335 ETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 394

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G   +   +L++    G+   +  Y   I  L  + R+ EA  L + + S     D    
Sbjct: 395 GMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSY 454

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N +I  + + +    A   F  ++E+G V    T + +   L +  +  + V + K +  
Sbjct: 455 NTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMIL 514

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D+ SYN ++  +C  G +  +  +++EM  KG+ P+   YN L+   C+E  +R 
Sbjct: 515 HGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRD 574

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L  QM   G + ++ TYN LI+   ++G +  AL L   +  + V PD  TY  L+ 
Sbjct: 575 ALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILIS 634

Query: 514 GLCQETNLQAAFEVFNKSV 532
             C+   L  A  + N+++
Sbjct: 635 WHCKVRLLDDAAMLLNRAM 653



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 185/439 (42%), Gaps = 37/439 (8%)

Query: 173 ALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
           AL + D++  R GV+ S   + V +            L++   +  R+          V 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV- 180

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
                C+  R  EA  +L  +    C PD + Y+ V       G V E   +L +   +G
Sbjct: 181 AARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVS-----GKFTIDDDVLNALIGSVSSIDP 346
            A   N + + + G+    R+ EA  L + +++     G  T     L   +  V   D 
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTY--GFLLQGLCRVRQADE 298

Query: 347 RSAIVFFNFMIEKGRVPTLS-TLSNLSKNLC-KRNKSDELVEVYKVLSANDYFTDMESYN 404
             A++        GRVP L+  L N     C    K  E  E+Y+ +       D  +Y+
Sbjct: 299 ARAML--------GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYS 350

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +++  LC  GR+  A  +++EM++KG  P+V  Y  ++ + C+  +    + L ++M A 
Sbjct: 351 ILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G + N + YN +I    + G ++ A+ L   M  +G  PD  +Y +++  LC    ++ A
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL--------- 570
             +F   +   V+      +T + +L R G +  A +L     L G S D+         
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530

Query: 571 ----GHSDSHVILLKSLAD 585
               G+ D  ++LL+ +A+
Sbjct: 531 MCKDGNVDRSLVLLEEMAE 549



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 183/403 (45%), Gaps = 20/403 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  +L+ L   RQ +   ++L +V    + L ++V   I   L +GK   +A  ++  
Sbjct: 281 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV---IGGCLAEGK-LAEATELYET 336

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            + L+  L   G I +A+++  EM  +G   + + + + +  FC+N  
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 205 LGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
                ++L+E+  +  ++     NG      +I+  CK  R++EA  ++ E+R + C PD
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNG------MIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             +Y  +         + E E + +   + GV      Y   I  L+ + R  +A  L +
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 510

Query: 321 VIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            ++    ++D    N LI ++    ++D   ++V    M EKG  P   + + L   LCK
Sbjct: 511 EMILHGCSLDVVSYNGLIKAMCKDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +  + +E+ K +       D+ +YN +++ LC  G +  A  +++++  + + PD+  
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 628

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISK 479
           YN L+   C+  LL  A  L ++  A+ C  G+ +   IL  K
Sbjct: 629 YNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDK 671



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ V    LC  GR  EA  +++ M R G  PD   Y +++ A C +  +  A  L ++M
Sbjct: 177 TFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 236

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC+ ++ T++ ++     +G +  A RL   M+ KG  P   TY  LL+GLC+    
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A  +  +    +V+L  +++   +      G    AT+L   +       D+H   IL
Sbjct: 297 DEARAMLGRVPELNVVLFNTVIGGCLAE----GKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
           +  L     +  A+  ++ +++
Sbjct: 353 MHGLCKLGRISSAVRLLREMEK 374


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 132/574 (22%), Positives = 235/574 (40%), Gaps = 68/574 (11%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSP-SLVARVINPYL 60
           T  P+ D     ++   S+ N T            T+ QL  +   S    + +  NP  
Sbjct: 16  TRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSS 75

Query: 61  LTHH--------SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112
           L  H         L L +F W  ++    H+   +  +L  L+ ++  N I ++L     
Sbjct: 76  LLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAK 135

Query: 113 NKITLDSSVYR-----------------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           N    +S+++                   ++ + ++      A   F+        +   
Sbjct: 136 NAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSAL 195

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN +L  L  +G I     ++ EM  R +  + + F V I   C+  K  +   +++++
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM 255

Query: 216 RK--------RENSMINGSVIAV-------------------------LIIHGFCKGKRV 242
           +           N++I+G   A                          ++I GFC+ + V
Sbjct: 256 KAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENV 315

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
             A KV +E++ +  +P+ + Y  +       G + E   +  K   +G+ P    Y   
Sbjct: 316 TAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNAL 375

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI---GSVSSIDPRSAIVFFNFMI 357
           I G   ++ + EA+E+ + I  GK  +  +V+  N LI   G    +D   A +  + M+
Sbjct: 376 INGFCKKKMLKEAREMLDDI--GKRGLAPNVITFNTLIDAYGKAGRMD--DAFLLRSMML 431

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P +ST + L    C+     E  ++ K +  N    D+ +YN++V  LC  G  R
Sbjct: 432 DTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  ++ EM   GL+P    YN+L++   RE     A  +   M   G   N+ TYN+LI
Sbjct: 492 KAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLI 551

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             F   G++E A RL + MLEKG+ P+ TTY  L
Sbjct: 552 KGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/549 (22%), Positives = 235/549 (42%), Gaps = 23/549 (4%)

Query: 12  RISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL----- 66
           R+   ++ A +R   A     LL +    LG R S  PS+V  +++  LL  H L     
Sbjct: 97  RLLSRLLGAGHRPHLAASLVDLLHRAALALGPRRSALPSVVDTLLS--LLADHGLLDDAV 154

Query: 67  -ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
            AL         PN      + + IL  L+ +RQ   +  +   + V  +      +  +
Sbjct: 155 RALARVRQLRVPPNTR----TCNHILLRLARNRQGGLVRRLFDLLPVPNVF----TFNIV 206

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I  L +     +A ++F  V+       P++   NSL+      G ++   ++  EM   
Sbjct: 207 IDFLCKEGELVEARALF--VRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKS 264

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G     + +   I  F +  ++ +  S   E++++   ++   V     +  FCK   V+
Sbjct: 265 GCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQ--GVVANVVTFSTFVDAFCKEGLVQ 322

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA K+  ++R+R   P+   Y  + +     G + +  V+L +    G+ P    Y   +
Sbjct: 323 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            GL  E ++ EA  +  ++  G    ++ +   LI G   + +   A+   N M  KG  
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGME 442

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
             +S    L   LCK  K DE   +   ++      +   Y  ++  L  +G+  EA  +
Sbjct: 443 LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++   G  P+V  Y +L++  C+   +  A   +++M   G   N++ Y  LI  F +
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCK 562

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +G +  A+ L + M++KG++ D   YTSL++G  ++ NLQ AF +  K +   + L    
Sbjct: 563 IGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYC 622

Query: 543 LSTFMISLC 551
            + F+   C
Sbjct: 623 YTCFISGFC 631



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 173/406 (42%), Gaps = 3/406 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+   +  G ++ A   F EM  +GV  + + F  F+  FC+   + + + +  ++R 
Sbjct: 274 NALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRV 333

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   M+        ++ G CK  R+++A  +LDE+  +   P+ + Y ++ +     G V
Sbjct: 334 R--GMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 391

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + VL    + GV      Y   I G  +      A +L   + +    +D  +   L
Sbjct: 392 AEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTL 451

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A    + M   G  P     + +   L K  K  E V +   +  + +
Sbjct: 452 IWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGF 511

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +Y  ++  LC +G + EA     +M+  GLDP+V  Y +L++  C+   L  A  
Sbjct: 512 QPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMH 571

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M   G S +   Y  LI  + +   ++ A  L   M+E G+  D   YT  + G C
Sbjct: 572 LMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFC 631

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
               +Q A  V ++ +   +   +++ +  +    + G+   A+ L
Sbjct: 632 NMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSL 677



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 176/452 (38%), Gaps = 46/452 (10%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           P + ++LL++LA  G +D+A++    +    V  +T      + +   N + G V  + D
Sbjct: 134 PSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFD 193

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            +        N      ++I   CK   + EA  +   ++   C PD + Y  + + +  
Sbjct: 194 LLPVPNVFTFN------IVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGK 247

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E E ++ + RK G A     Y                                  
Sbjct: 248 CGDLEEVEQLVSEMRKSGCAADVVTY---------------------------------- 273

Query: 334 LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            NALI   S       A  +F  M  +G V  + T S      CK     E ++++  + 
Sbjct: 274 -NALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMR 332

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +  +Y  +V   C +GRL +A  ++ EM  +GL P+V  Y  +++  C+E  + 
Sbjct: 333 VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVA 392

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  +   M   G   N   Y  LI         E AL L + M  KG+  D + Y +L+
Sbjct: 393 EADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLI 452

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            GLC++  +  A  + +K     +     I +T M +L + G    A  LL  +  D G 
Sbjct: 453 WGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKI-LDSGF 511

Query: 573 SD---SHVILLKSLADAREVEMAIEHIKWIQE 601
                ++  L+  L  A  +  AI H   ++E
Sbjct: 512 QPNVVTYCALIDGLCKAGSISEAISHFNKMRE 543


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 184/406 (45%), Gaps = 25/406 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A     G +D A ++   M    V      +   I   C+  ++G+ LS+LD++  
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R  + S++  +V+    +   CK     +A +VLDE+R + C P+ + Y ++       G
Sbjct: 174 RGCQPSVVTYTVL----LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V +    L +    G  P T  Y   + GL   +R  + +EL   ++      ++   +
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 336 ALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVY 388
            L+      G V       AI     M   G     +TL N+  N +CK+ + D+  +  
Sbjct: 290 MLVRFFCRGGMVE-----RAIQVLEQMSGHGCAAN-TTLCNIVINTICKQGRVDDAFQFL 343

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     D  SY  ++  LC + R  +A  +++EM RK   P+   +N+ +   C++
Sbjct: 344 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 403

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            L+  A  L +QM   GC  N+ TYN L++ F   G ++ AL LF++M  K   P+  TY
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITY 460

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           T+LL GLC    L AA E+  + +  D        +  +   C++G
Sbjct: 461 TTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG 506



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/518 (22%), Positives = 214/518 (41%), Gaps = 39/518 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I++ L    ++    S+L  +           Y  ++ ++ +     +A  V +E+
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   +   P I   N ++  +  +G +D+A +  + +S  G +  T+ +   +   C   
Sbjct: 207 R--AKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 264

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +   V  +  E+ ++ N M N  V   +++  FC+G  VE A +VL+++    C  +   
Sbjct: 265 RWEDVEELFAEMMEK-NCMPN-EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             IV       G V +    L      G +P T  Y   + GL    R  +AKEL + +V
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 324 SGKFTIDDDVLNA----------------LIGSVSSIDPRSAIVFFNFMIE----KGRV- 362
                 ++   N                 LI  +S       IV +N ++     +GRV 
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 363 ------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                       P   T + L   LC   + D   E+   +   D   ++ ++NV+VSF 
Sbjct: 443 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G + EA  ++++M   G  P++  YN+L++   ++     A +L   + ++G S ++
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 562

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ +I   S    +E A+++FH + + G+ P A  Y  +L  LC+  N   A + F  
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            V++  M       T +  L           LLR L S
Sbjct: 623 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCS 660



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 4/337 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C+  R  +A +VL          D  AY  +   +   G +   +   +    + 
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQL---DAARRLIASMP 140

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAI 350
           VAP    Y   I GL    R+ EA  L + ++             L+ +V  S     A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + M  KG  P + T + +   +C+  + D+  E    LS+  +  D  SY  ++  L
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   +  EM  K   P+   ++ L+   CR  ++  A ++ +QM   GC+ N 
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              NI+I+   + G ++ A +  +NM   G +PD  +YT++L+GLC+    + A E+  +
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            V  +        +TF+  LC++G    AT L+  +S
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/522 (18%), Positives = 206/522 (39%), Gaps = 54/522 (10%)

Query: 30  WTPLLEQTLHQLGLRDSLS--PSLVARVINPYLLTHHSLALG------------FFNWAS 75
           +T LLE      G   ++     + A+   P ++T++ +  G            F N  S
Sbjct: 183 YTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 242

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
               F    +SY ++LK L  +++   ++ +  ++       +   +  ++    +G   
Sbjct: 243 SY-GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  V  ++  +       +CN ++  +   G +D+A +  + M   G    TI +   
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY--- 358

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
                                               ++ G C+ +R E+A ++L E+  +
Sbjct: 359 ----------------------------------TTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C P+ + +          G + +  +++++  + G       Y   + G  V+ R+  A
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            EL   +     TI    L   + +   +D  +A      M++K   P + T + L    
Sbjct: 445 LELFYSMPCKPNTITYTTLLTGLCNAERLD--AAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C++   DE +E+ + +  +    ++ +YN ++  +       EA  ++  +   G+ PD+
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 562

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y+S++    RED +  A K++  +   G       YN ++    +    +GA+  F  
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           M+  G  P+  TY +L+EGL  E  L+   ++  +  +  V+
Sbjct: 623 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 35/247 (14%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS---------- 408
           +G  P +   + L +NLC+R ++ +   V +    +    D+ +YN +V+          
Sbjct: 72  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131

Query: 409 ----------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                  LC  GR+ EA  ++ +M  +G  P V  Y  L+EA C
Sbjct: 132 ARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +      A ++ D+M A GC+ N+ TYN++I+     G ++ A    + +   G  PD  
Sbjct: 192 KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 251

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +YT++L+GLC     +   E+F + +  + M         +   CR G    A ++L  +
Sbjct: 252 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311

Query: 567 SSDLGHS 573
           S   GH 
Sbjct: 312 S---GHG 315



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 3/245 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + + + LC R +  E + +   +        + +Y V++  +C S    +A  V
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG  P++  YN ++   CRE  +  A++  +++ + G   +  +Y  ++     
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
               E    LF  M+EK   P+  T+  L+   C+   ++ A +V  +   H      ++
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK-WI 599
            +  + ++C++G    A + L  + S     D  S+  +LK L  A   E A E +K  +
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 600 QESSP 604
           +++ P
Sbjct: 383 RKNCP 387



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  ++     +G  PDV     L+   CR      A ++      SG + ++  YN 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++ +   G+++ A RL  +M    VAPDA TYT ++ GLC    +  A  + +  ++  
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
              +    +  + ++C+   F  A ++L
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVL 203


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 242/554 (43%), Gaps = 57/554 (10%)

Query: 15  QAIISASNR-TRPARKWTPLLEQTLHQLG----LRDSLSPSLVARVINP----YLLTHHS 65
           QA++SA  R  +P+RK   L+     + G     R++    + AR I P    Y    H+
Sbjct: 297 QAVVSAFERIKKPSRKEYGLMVNYYTRRGDMHRARETFE-KMRARGIEPSSHVYTNLIHA 355

Query: 66  LALGFFNWAS-------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
            A+G     +       ++     S ++Y  ++   + +    + D   ++ K    +L+
Sbjct: 356 YAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLN 415

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           + +Y  II +  Q  N  KA ++  E++    D   +I ++++      G  D  L +F+
Sbjct: 416 AIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFE 475

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFC 237
                G+  S I +G  I  +   AKLG+V   L+  ++ E++ I  ++    ++I+GF 
Sbjct: 476 RFKECGLNPSVITYGCLINLY---AKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFL 532

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-------------------- 277
           K K    AF + ++L     KPD + Y  +   F  MG +                    
Sbjct: 533 KLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTR 592

Query: 278 --------FEREVVLKKK-------RKLGVAPRTNDYREFILGLIVERRICEAKE-LGEV 321
                   F R+  +KK        R  G  P  + Y   ILGL+ +R++ +A++ L E+
Sbjct: 593 TFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEM 652

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            ++G    +      + G  S  D   A  +F  + ++G    + T   L K  CK  + 
Sbjct: 653 TLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRM 712

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
              + V K +SA +   +   YN+++      G + EA  ++Q+MKR+G+ PD+  Y S 
Sbjct: 713 QSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSF 772

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + AC +   ++ A K  ++M + G   N+KTY  LI+ ++     E AL  F  M   G+
Sbjct: 773 INACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGL 832

Query: 502 APDATTYTSLLEGL 515
            PD   Y  L+  L
Sbjct: 833 KPDRAVYHCLMTSL 846



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/510 (17%), Positives = 211/510 (41%), Gaps = 5/510 (0%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++    +  +  +A   F +++    +    +  +L+   A    ++ AL    +M 
Sbjct: 314 YGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMK 373

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             G+E S + + + +  F +            E +++ +S+   ++I   II+ +C+   
Sbjct: 374 EEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSL--NAIIYGNIIYAYCQRCN 431

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +++A  ++ E+           Y  + + + ++G   +  +V ++ ++ G+ P    Y  
Sbjct: 432 MDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGC 491

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I       ++ +A E+ + +       +    + LI G +   D  +A   F  +I+ G
Sbjct: 492 LINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDG 551

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P +   +N+    C   K D  V   K +    +     ++  ++      G +++A 
Sbjct: 552 IKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKAL 611

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V   M+  G  P V  YN+L+     +  +  A+++ D+M  +G S N  TY  ++  +
Sbjct: 612 DVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGY 671

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           + +G+   A   F  + ++G+  D  TY +LL+  C+   +Q+A  V  +    ++    
Sbjct: 672 ASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 731

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKW 598
            I +  +    RRG    A  L++ +  +    D H     + + + A +++ A + I+ 
Sbjct: 732 FIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEE 791

Query: 599 IQESSPTMLQEISAELFASLSSSSYPEPIL 628
           ++        +    L    + +S PE  L
Sbjct: 792 MKSVGVKPNVKTYTTLINGWARASLPEKAL 821



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           T+ E++  +VS          A+  I++  RK     V++Y        R D+ R A++ 
Sbjct: 291 TEPENWQAVVS----------AFERIKKPSRKEYGLMVNYYTR------RGDMHR-ARET 333

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +++M A G   +   Y  LI  ++   ++E AL     M E+G+     TY+ L+ G  +
Sbjct: 334 FEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAK 393

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             N ++A   F ++      L   I    + + C+R +   A  L+R +  +
Sbjct: 394 TGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEE 445


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 180/379 (47%), Gaps = 7/379 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           + L + +   G+ +  + +  E+   G+E       + I  FC   ++   LS+L ++ K
Sbjct: 66  SKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILK 125

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S++  + +    ++G C   ++++   + D++ +R  +P+   Y ++       G
Sbjct: 126 LGLEPSIVTFTTL----LNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSG 181

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E    LK+  K+G  P   +Y   I G  +  ++ EA+ + +++VS   T +     
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYT 241

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +L+     I+    A+   +  + KG VP + T + +   LC+  +     ++++ + A+
Sbjct: 242 SLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAH 301

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  ++ +Y V++  LC  G L EA+ + QEM+R  + P++  Y  L+++ C+   ++  
Sbjct: 302 GHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDG 361

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K+L+ ++   G   N+ TY  L+    + G I  A +LF  M E G  PD   Y  +++G
Sbjct: 362 KELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQG 421

Query: 515 LCQETNLQAAFEVFNKSVN 533
             Q  +   A ++  + VN
Sbjct: 422 FLQHKDPSMARQLVEEMVN 440



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 148/313 (47%), Gaps = 3/313 (0%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG+ P    +   + GL +E ++ +   L + ++      +    N +I S+S
Sbjct: 119 VLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLS 178

Query: 343 -SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            S     A+ F   M + G VP +   S L    C R + DE   V+ ++ +     ++ 
Sbjct: 179 KSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVY 238

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  +++  C   R+ EA  ++ E  RKGL PD+  + +++   CR      A++L+  +
Sbjct: 239 TYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYI 298

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A G + N+ TY +L+    + G +E A  LF  M    V P+   YT L++ LC+   +
Sbjct: 299 CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKI 358

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
           +   E+F++ ++  +       +  + +LC+ G  + A KL R +  D    D  ++ ++
Sbjct: 359 KDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVI 418

Query: 580 LKSLADAREVEMA 592
           ++     ++  MA
Sbjct: 419 IQGFLQHKDPSMA 431



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 128/297 (43%), Gaps = 39/297 (13%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A+  F  M+ +  +P +   S L  ++ +    + +V + K +       D+ S +
Sbjct: 42  DKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLS 101

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           ++++  C   R+     V+ ++ + GL+P +  + +L+   C E  +     L+D M   
Sbjct: 102 ILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVR 161

Query: 465 GCSGNLKTYNILISKFSEVGEIEGAL---------------------------------- 490
           G   N+ TYN++I+  S+ G+   AL                                  
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 491 -RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             +F  M+ KG  P+  TYTSL+ G C+   ++ A ++ ++++   ++      +T +  
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQESS 603
           LCR G  L A +L R + +  GH+    ++ +LL  L     +E A    + +Q S+
Sbjct: 282 LCRAGRPLAAQQLFRYICAH-GHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 3/320 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +LL  L  +G +D  + ++D+M  RG++ +   + V I    ++ K  + L  L ++ K
Sbjct: 136 TTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEK 195

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                +   V    +I G+C   +++EA  V D +  + C P+   Y  +   +  +  +
Sbjct: 196 V--GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERI 253

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L +  + G+ P    +   I GL    R   A++L   I +   T +      L
Sbjct: 254 EEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVL 313

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G     +   A   F  M      P L   + L  +LCK  K  +  E++  L     
Sbjct: 314 LDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGL 373

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +Y  +V  LC  G + EA+ + ++M+  G  PD   YN +++   +      A++
Sbjct: 374 KPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQ 433

Query: 457 LWDQMFASGCSGNLKTYNIL 476
           L ++M   G S +  T  +L
Sbjct: 434 LVEEMVNRGFSADAATRALL 453


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/495 (23%), Positives = 213/495 (43%), Gaps = 38/495 (7%)

Query: 67  ALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           AL  FN    +QP    S + ++ +L S++ ++  + + S+ +Q+    I  D      +
Sbjct: 29  ALSTFNRMLHKQP--PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 86

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I SL        AFS   ++             +L+  L  +G I  AL +FD+M   G 
Sbjct: 87  INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 146

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--------ENSMING--------SVIA 229
           + + + +G  I   C++ ++ +  ++  E+  +         NS+I+G         V  
Sbjct: 147 QPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 206

Query: 230 VL-----------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           ++                 ++   CK   V EA  V+D +  R  +P+ + Y  + +   
Sbjct: 207 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHC 266

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L   V     V               Y   I G    + + +A  L E +   + T +  
Sbjct: 267 LRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 326

Query: 333 VLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI  +  +   + AI  F+ M+ +G++P L T   LS  LCK    D+ + + K +
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 386

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             +++  D++ Y  ++  +C +G L +A  +   +  KGL P+V  YN ++   C++ LL
Sbjct: 387 EGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL 446

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A KL+ +M  +GCS N  TYN++   F    E    + L   ML +G + D +T T+L
Sbjct: 447 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST-TTL 505

Query: 512 LEGLCQETNLQAAFE 526
           L G+  +  L  + +
Sbjct: 506 LVGMLSDDGLDQSVK 520



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 182/426 (42%), Gaps = 40/426 (9%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D AL  F+ M H+    ST+ F   +    +      +LS+    R+ ++  I   V  
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL---SRQMDSFGIPPDVYT 82

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+  C   RV+ AF  L ++     +PD   +  +     + G + E   +  K  
Sbjct: 83  LAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI 142

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
             G  P    Y   I GL  +R++ EA           F I                   
Sbjct: 143 GEGFQPNVVTYGTLINGLCKDRQVTEA-----------FNI------------------- 172

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
               F+ MI KG  P + T ++L   LCK  +   +  +   +  +    D+ + N +V 
Sbjct: 173 ----FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 228

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G + EA+ V+  M  +G++P+V  YN+LM+  C  + +  A K++D M    C  
Sbjct: 229 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 288

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ +YN LI+ + ++  ++ A+ LF  M  + + P+  TY +L+ GLC    LQ A  +F
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADA 586
           ++ V    +       T    LC+  H   A  LL+ +       D  +   +L  +  A
Sbjct: 349 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 408

Query: 587 REVEMA 592
            E+E A
Sbjct: 409 GELEDA 414



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 169/407 (41%), Gaps = 59/407 (14%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     ST+ F   +    +      VLS+  ++   ++  I   V  
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM---DSFGIPPDVYT 618

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC  +R+  AF VL +L     +PD + Y          G++      L K  
Sbjct: 619 LNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTY----------GTLMNG---LCKMI 665

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKE----LGEVIVS-------------------G 325
             G++P    Y   I  L     +CE K     L E++ S                   G
Sbjct: 666 TKGISPDIFTYNSLIHALC---NLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 722

Query: 326 KFTIDDDVLNALI----------------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
              I  DV++ +I                G     +   A+  F+ M+ KG VP + + +
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 782

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L    C+  + D+ + + + +S      D  +YN ++  LC  GRL+ A  +  EM   
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 842

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  PD+  Y  L++  C+   L  A  L   +  S    ++  YNI I      GE+E A
Sbjct: 843 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 902

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             LF N+  KG+ PD  TY  ++ GLC+   L  A ++F K   +D+
Sbjct: 903 RDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 123/255 (48%), Gaps = 16/255 (6%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+ K   P+    + L  ++ K      L+ + + + +     D+ +  ++++
Sbjct: 29  ALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVIN 88

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC   R+  A+  + ++ + G  PD + + +L+   C E  +  A  L+D+M   G   
Sbjct: 89  SLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP 148

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  LI+   +  ++  A  +F  M+ KG++P+  TY SL+ GLC+    +    + 
Sbjct: 149 NVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLM 208

Query: 529 NKSVNHDVMLARSILSTFMISLCRRG-----HFLVATKLLRGLSSDLGHSDSHVILLKSL 583
           N+ V+  +M     L+T + +LC+ G     H +V   + RG+       + +V+   +L
Sbjct: 209 NEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV-------EPNVVTYNAL 261

Query: 584 ADAR----EVEMAIE 594
            D      EV++A++
Sbjct: 262 MDGHCLRNEVDVAVK 276



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 151/369 (40%), Gaps = 21/369 (5%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL  +A   +    L +  +M   G+        + I  FC   +LG   S+L ++ K  
Sbjct: 587 LLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG 646

Query: 218 ------RENSMINGSVIAVL------------IIHGFCKGKRVEEAFKVLDELRIRECKP 259
                    +++NG    +             +IH  C     +    +L+E+   +  P
Sbjct: 647 FQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMP 706

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + +  V +     G +     V+    K GV P    Y   + G  +   + EA ++ 
Sbjct: 707 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 766

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + +V      +    N LI     I     A+     M  +G +    T + L   LC  
Sbjct: 767 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV 826

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +    + ++  + A+    D+ +Y +++ +LC +  L EA  +++ ++   LD D+  Y
Sbjct: 827 GRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVY 886

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N  ++  CR   L  A+ L+  + + G   +++TYNI+I    + G ++ A +LF  M E
Sbjct: 887 NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 946

Query: 499 KGVAPDATT 507
             +  ++T+
Sbjct: 947 NDIWSNSTS 955



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 114/588 (19%), Positives = 225/588 (38%), Gaps = 69/588 (11%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           A+  F   S+Q   T + ++Y++++  L  + R  +AI    + V   +I  D   YR +
Sbjct: 309 AMYLFEEMSRQ-ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIP-DLVTYRTL 366

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
              L + ++  KA ++   ++ +  D   +I  ++L  +   G +++A  +F  +S +G+
Sbjct: 367 SDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 426

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           + +   + + I   C+   L +   +  E+ K  N          LI  GF +       
Sbjct: 427 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK--NGCSPNDCTYNLITRGFLRNNEALRT 484

Query: 246 FKVLDELRIRE----------------------------CKPDFIAYRIVAEEFKLMGSV 277
            ++L+E+  R                             CKP   + R    + + +  +
Sbjct: 485 IELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSS-SSRPSGTQMRSLPPL 543

Query: 278 FEREVV-------------------LKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           F                          +   +   P T D+ + +  +   +       L
Sbjct: 544 FLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSL 603

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              + S     D   LN LI S   +     A      +++ G  P + T   L   LCK
Sbjct: 604 STQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK 663

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                    + K +S  D FT    YN ++  LC     +    ++ EM    + P+V  
Sbjct: 664 M--------ITKGISP-DIFT----YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 710

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           ++++++A C+E ++  A  + D M   G   ++ TY  L+       E++ A+++F  M+
Sbjct: 711 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 770

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            KG  P+  +Y  L+ G CQ   +  A  +  +     ++      +T +  LC  G   
Sbjct: 771 HKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQ 830

Query: 558 VATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
            A  L   +  S  +    ++ ILL  L     +  A+  +K I+ S+
Sbjct: 831 HAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 205/473 (43%), Gaps = 45/473 (9%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LAL  F +A +  P FTH+  +YHSIL  LS +R  + ++S++  ++ +   +      F
Sbjct: 64  LALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLF 123

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEM 180
           I   L++       +     +     D G +      N+LL VL  +   D    MF   
Sbjct: 124 I--DLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNS 181

Query: 181 SHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
               G+  +     + +   C+   +     +LDE+      ++   V    I+ G+   
Sbjct: 182 KESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM--GLVPNLVTYTTILGGYVAR 239

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             +E A +VL+E+  R   PD   Y ++ + +  +G   E   V+    K  + P     
Sbjct: 240 GDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN---- 295

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
            E   G+++ R +C+ K+ GE                            A   F+ M+E+
Sbjct: 296 -EVTYGVMI-RALCKEKKSGE----------------------------ARNMFDEMLER 325

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
             +P  S    +   LC+ +K DE   +++ +  N+   D    + ++ +LC  GR+ EA
Sbjct: 326 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEA 385

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +  E + KG  P +  YN+L+   C +  L  A +LWD M+   C  N  TYN+LI  
Sbjct: 386 RKLFDEFE-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEG 444

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            S+ G ++  +R+   MLE G  P+ TT+  L EGL +    + A ++ + +V
Sbjct: 445 LSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAV 497



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + T + L K LCK+N  +   +V   + +     ++ +Y  ++      G +  A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V++EM  +G  PD + Y  LM+  C+      A  + D M  +    N  TY ++I  
Sbjct: 246 KRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRA 305

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             +  +   A  +F  MLE+   PD++    +++ LC++  +  A  ++ K + ++ M  
Sbjct: 306 LCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 365

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
            ++LST +  LC+ G    A KL 
Sbjct: 366 NALLSTLIHWLCKEGRVTEARKLF 389



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/105 (20%), Positives = 49/105 (46%)

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G + N+ T N+L+    +  +IE A ++   +   G+ P+  TYT++L G     ++++A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             V  + ++       +  +  M   C+ G F  A  ++  +  +
Sbjct: 246 KRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKN 290


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 213/497 (42%), Gaps = 47/497 (9%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QP      +      K+  L + +   + + + V  N+ T     Y  ++  L + + T 
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERT-----YNVVVNGLCKARLTS 58

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFG 193
           KA+ V  E++ + + + P++   ++++      G +D A ++  EM  R G+    + + 
Sbjct: 59  KAYEVLKEMR-DGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYT 117

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE-L 252
             +   C + K+ +   M+ E++ +       +  A  +I G+C  ++V+EA K+  E L
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA--LITGWCNARKVDEALKLYKEIL 175

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
                KPD + Y  + + F   G++ +   +L         P    Y   + GL      
Sbjct: 176 TSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL------ 229

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C+A +L +                            A+  F  M  KG VP + T + L 
Sbjct: 230 CKAGDLDQ----------------------------ALDLFRRMTSKGCVPNVVTYTTLI 261

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LC  +K D    +   ++A     D  SYN ++   C  GR+ EA  + +EM  K   
Sbjct: 262 HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL 321

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQM-FASGCSGNLKTYNILISKFSEVGEIEGALR 491
           PD   Y  L+   C    L  A+ L + M  A+G   ++ TY+I+++ +S       A  
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
               M+ + VAP+A TY+SL++GLC+   +  A EV    VN  V  +    ++ + +LC
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC 441

Query: 552 RRGHFLVATKLLRGLSS 568
           R G    A KLL  +++
Sbjct: 442 RLGDMDEAWKLLVAMAA 458



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 201/450 (44%), Gaps = 11/450 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +Y+ ++  L  +R  +    VLK+++  K +  D   Y  +I    +     +A  +  E
Sbjct: 43  TYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILRE 102

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + I P++    S++  L  DG +D A +M  EM  +GVE     F   I  +C  
Sbjct: 103 MVTR-DGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNA 161

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+ + L +  E+    +S     V    +I GFCK   +E+A K+L  +  R+C P+ +
Sbjct: 162 RKVDEALKLYKEILT-SSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 220

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +       G + +   + ++    G  P    Y   I GL    ++  A+ L + +
Sbjct: 221 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            +     D    NAL+     +     A   F  M  K  +P   T + L +  C  ++ 
Sbjct: 281 TATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340

Query: 382 DE---LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           +E   L+E  K  +  D   D+ +Y+++V+    + R  EA   IQEM  + + P+   Y
Sbjct: 341 EEARFLLENMKTAAGID--PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTY 398

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           +SL++  C+   +  A ++   M       ++ T+N +I     +G+++ A +L   M  
Sbjct: 399 SSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 458

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            G+ P   TYT+LLEG  +   ++ A+E+F
Sbjct: 459 HGLEPGMVTYTTLLEGFSRTGRMEIAYELF 488



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 174/417 (41%), Gaps = 40/417 (9%)

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           + + + + I  FC+  +L Q L+  +++R  E    N     V +++G CK +   +A++
Sbjct: 6   TVVTWTIIIDGFCKANQLKQALACFEKMR--EFVAPNERTYNV-VVNGLCKARLTSKAYE 62

Query: 248 VLDELRI-RECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILG 305
           VL E+R  +   PD + Y  V   F   G +    E++ +   + G+AP    Y   + G
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L  + ++  A E+                                     M  KG  P  
Sbjct: 123 LCRDGKMDRACEM----------------------------------VREMKLKGVEPDK 148

Query: 366 STLSNLSKNLCKRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
            T S L    C   K DE +++YK +L+++ +  D+ +Y  ++   C SG L +A  ++ 
Sbjct: 149 FTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLG 208

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            M+ +   P+V  Y+SL+   C+   L  A  L+ +M + GC  N+ TY  LI       
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 268

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           +++ A  L   M      PD  +Y +LL+G C+   ++ A ++F +      +  R   +
Sbjct: 269 KVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYT 328

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
             +   C       A  LL  + +  G     V     +A     +  +E  ++IQE
Sbjct: 329 CLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 385



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/393 (18%), Positives = 145/393 (36%), Gaps = 50/393 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++     S  +     +L  ++  K   +   Y  ++  L +  +  +A  +F  
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR- 243

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +   +   P +    +L+  L +   +D A  + DEM+       T+ +   +  +C  
Sbjct: 244 -RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRL 302

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDF 261
            ++ +   +  E+  +  S +   +    ++ GFC   R+EEA  +L+ ++      PD 
Sbjct: 303 GRIEEAKQLFKEMATK--SCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 360

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y IV   +       E    +++     VAP    Y   I GL    R+  A E+ + 
Sbjct: 361 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKN 420

Query: 322 IVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLST------------- 367
           +V+ +        N++IG++  + D   A      M   G  P + T             
Sbjct: 421 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 480

Query: 368 -----------------------------LSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                                         S L + LCK  + D+ + V + L + +   
Sbjct: 481 MEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEP 540

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
             E    +V  L  +GR  EA  +I  + + GL
Sbjct: 541 AEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 19/220 (8%)

Query: 58  PYLLTHHSLALGFFNWASQQ------------PNFTHSPLSYHSILKSLSLSRQINAIDS 105
           P  +T+  L  GF N +  +                   ++Y  ++   S +++      
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
            ++++    +  ++  Y  +I  L +      A  V   +     +      NS++  L 
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC 441

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN----- 220
             G +D A K+   M+  G+E   + +   +  F    ++     + + +RK+       
Sbjct: 442 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSA 501

Query: 221 -SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +++     + LI  G CK + +++A  V++ELR REC+P
Sbjct: 502 ANLVPEQAFSALI-RGLCKAREIDKAMAVVEELRSRECEP 540


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 168/378 (44%), Gaps = 11/378 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM----LD 213
           N LL VL   G +    K+ D++  RGV  +   + +FI   C+  +L   + M    ++
Sbjct: 220 NKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIE 279

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           +  K +    N       +I+G CK  + +EA   L ++     +PD   Y  +   +  
Sbjct: 280 QGPKPDVITYNN------LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK 333

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G V   E ++      G  P    YR  I GL  E     A  L    +      +  +
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 334 LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI  +S+      A    N M EKG +P + T + L   LCK     +   + KV+ 
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           +  YF D+ ++N+++    T  ++  A  ++  M   G+DPDV  YNSL+   C+     
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
              + +  M   GC+ NL T+NIL+       +++ AL L   M  K V PDA T+ +L+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573

Query: 513 EGLCQETNLQAAFEVFNK 530
           +G C+  +L  A+ +F K
Sbjct: 574 DGFCKNGDLDGAYTLFRK 591



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 140/610 (22%), Positives = 256/610 (41%), Gaps = 95/610 (15%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-LDSSVYRFI 125
           AL  FN   ++  F H+  +Y S+++ L    +  A++ VL  ++ N    +   VY   
Sbjct: 23  ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGA 82

Query: 126 IPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSH 182
           + +  +    Q+A +VF  + F +CE   P +   N++++VL   GY D A K++  M  
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCE---PTVFSYNAIMSVLVDSGYFDQAHKVYMRMRD 139

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGF----- 236
           RG+      F + +  FC+ ++    L +L+ +  +   M   +V+A   ++ GF     
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEM---NVVAYCTVVGGFYEENF 196

Query: 237 ------------------------------CKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
                                         CK   V+E  K+LD++  R   P+   Y +
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256

Query: 267 VAEEF----------KLMGSVFER-------------------------EVVLKKKRKLG 291
             +            +++G + E+                         EV L K    G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316

Query: 292 VAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           + P +  Y   I G      +  A+ + G+ + +G F  D     +LI G     +   A
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG-FVPDQFTYRSLIDGLCHEGETNRA 375

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  FN  + KG  P +   + L K L  +    E  ++   +S      +++++N++V+ 
Sbjct: 376 LALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNG 435

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G + +A G+++ M  KG  PD+  +N L+     +  +  A ++ D M  +G   +
Sbjct: 436 LCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPD 495

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF---- 525
           + TYN L++   +  + E  +  +  M+EKG AP+  T+  LLE LC+   L  A     
Sbjct: 496 VYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLE 555

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS---HVILLKS 582
           E+ NKSVN D +   +++  F    C+ G    A  L R +      S S   + I++ +
Sbjct: 556 EMKNKSVNPDAVTFGTLIDGF----CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 583 LADAREVEMA 592
             +   V MA
Sbjct: 612 FTEKLNVTMA 621



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 195/429 (45%), Gaps = 35/429 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK-------LGQVLS 210
           N  +  L   G +D A++M   +  +G +   I +   I+  C+N+K       LG++++
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVN 314

Query: 211 -MLDEVRKRENSMINGSVIAVLI-------------------------IHGFCKGKRVEE 244
             L+      N++I G     ++                         I G C       
Sbjct: 315 EGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNR 374

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  + +E   +  KP+ I Y  + +     G + E   +  +  + G+ P    +   + 
Sbjct: 375 ALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVN 434

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL     + +A  L +V++S  +  D    N LI G  + +   +A+   + M++ G  P
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDP 494

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T ++L   LCK +K ++++E YK +       ++ ++N+++  LC   +L EA G++
Sbjct: 495 DVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLL 554

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-ASGCSGNLKTYNILISKFSE 482
           +EMK K ++PD   + +L++  C+   L  A  L+ +M  A   S +  TYNI+I  F+E
Sbjct: 555 EEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTE 614

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              +  A +LF  M+++ + PD  TY  +++G C+  N+   ++   + + +  + + + 
Sbjct: 615 KLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTT 674

Query: 543 LSTFMISLC 551
           L   +  LC
Sbjct: 675 LGRVINCLC 683


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 136/619 (21%), Positives = 248/619 (40%), Gaps = 133/619 (21%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           +LAL +F   +   +F H+PL+Y  +++ L+  R+++ +  +L+Q+K+  I+    ++  
Sbjct: 57  TLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFIS 116

Query: 125 IIPSLIQGKNTQKA-------------------------------FSVFNEVKFNCEDIG 153
           +I S  +  ++++A                               F + N +  N +  G
Sbjct: 117 VIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDG 176

Query: 154 PE----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            E      N LL  L  +  +D A K+  EMS +G +   + +   I   C   KLG+V 
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC---KLGKV- 232

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
               E R+   S      +   +I+G CK    EEAF++LDE+  +   P+ I+Y  +  
Sbjct: 233 ---KEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN 289

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-------------------- 309
                G+V     VL K    G +P  + +   I G  ++                    
Sbjct: 290 ALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP 349

Query: 310 ---------RRICEAKELGEVI-VSGKFTIDDDVLN-----ALI-GSVSSIDPRSAIVFF 353
                      +C  + LG+ + V  +  I+    N     ALI G   + D   A   +
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVW 409

Query: 354 NFMIEKGRVPTLS-----------------------------------TLSNLSKNLCKR 378
           N+MI  G  P +                                    T +   K LC  
Sbjct: 410 NWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGS 469

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + D  ++V+  +  +  F +  +YN ++  L    R  EA+G++++M+ +G++ ++  Y
Sbjct: 470 GRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTY 529

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+++   C   +L  A +L  +M   G   +  T NI+I  + + G++  A++L   +  
Sbjct: 530 NTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSA 589

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
               PD   YTSL+ G+C    ++ A     +      ML+  I               V
Sbjct: 590 GKWHPDIIAYTSLISGICTHIGVEEAIVYLRR------MLSEGISPN------------V 631

Query: 559 AT--KLLRGLSSDLGHSDS 575
           AT   L+R L S++GHS +
Sbjct: 632 ATWNVLVRHLFSNMGHSGA 650



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 173/435 (39%), Gaps = 29/435 (6%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S   Y++++  +           +L ++    I  +   Y  II +L    N + + 
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 140 SVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +V    K       P +    SL+      G    AL  +D M   GV  + + +   + 
Sbjct: 302 AVL--AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMH 359

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELR 253
             C    LG  +S+ +++       ING    V     +I G+ K   ++ A +V + + 
Sbjct: 360 GLCSKRSLGDAVSVFNQME------INGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMI 413

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRI 312
              C P+ +AY  + +      S+F +   L +  ++    P T  +  FI GL    R+
Sbjct: 414 THGCHPNVVAYTCMVDVL-CRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRV 472

Query: 313 CEA-KELGEVIVSGKF---TIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLS 366
             A K   ++  SG F   T  +++L++L+      D R   A      M  +G    L 
Sbjct: 473 DWAIKVFDQMGNSGCFPNTTTYNELLDSLLK-----DRRFGEAFGLVKDMEHRGIELNLV 527

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + +    C      E +E+   +       D  + N+++   C  G++  A  ++  +
Sbjct: 528 TYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRL 587

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGE 485
                 PD+  Y SL+   C    +  A     +M + G S N+ T+N+L+   FS +G 
Sbjct: 588 SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGH 647

Query: 486 IEGALRLFHNMLEKG 500
             GA++    +L  G
Sbjct: 648 -SGAVQFLDAVLGSG 661



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 19/189 (10%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G   +A      M+   + P V  YN +++A   E+  +    ++  M   G   N+ T
Sbjct: 124 AGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFT 183

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV---FN 529
           YNIL+    +   ++GA +L   M  KG  PD  +YT+L+  LC+   ++ A E+   F 
Sbjct: 184 YNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT 243

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
            SV         + +  +  +C+   F  A +LL     +G+  ++    S+  ++ +L+
Sbjct: 244 PSV--------PVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV---ISYTTIINALS 292

Query: 585 DAREVEMAI 593
           DA  VE+++
Sbjct: 293 DAGNVELSL 301


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 137/610 (22%), Positives = 239/610 (39%), Gaps = 116/610 (19%)

Query: 1   MTMRPATDLATRISQAIISA--SNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINP 58
           +T+R  T L   I   +I    +N  RP +  + L   TLHQ+                 
Sbjct: 5   VTLRSETQLVQNICATVIKGGWNNLLRP-KICSILTASTLHQV----------------L 47

Query: 59  YLLTHHS----LALGFFNW-ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           Y L+ HS    L+   F W  S  PN+ HS  S  +++  L+  + +    S+L+++   
Sbjct: 48  YQLSLHSQGPCLSWALFKWIESSIPNYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYR 107

Query: 114 KI-----------------TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI 156
                               ++S V+ +++      K  Q+A  VF  +  N        
Sbjct: 108 DFLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHA 167

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  LL  LA D   D   K++ +M+  GVE +   + V                      
Sbjct: 168 CTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNV---------------------- 205

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                          +IH  CK   VE+A  +L E+  +   PD   Y  +   +   G 
Sbjct: 206 ---------------LIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGM 250

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
            +E   V  +  + G+ P    Y   I G   E R+ EA  L + I              
Sbjct: 251 HYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI-------------- 296

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                                 +   P   T + L    C+ N  D+ + + + + A   
Sbjct: 297 ----------------------RDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGL 334

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           +  + +YN ++  LC  GR+R+A  ++ EM  K ++PD    N+L+ A C+   ++ A K
Sbjct: 335 YPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALK 394

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + ++M  +G   +  TY  LI  F ++ E++GA  L  +ML+ G +P   TY+ L++G C
Sbjct: 395 VKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYC 454

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
            + N +A  ++ ++ V   + + +S+    +   C+R     A K+   +       DS 
Sbjct: 455 NQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDS- 513

Query: 577 VILLKSLADA 586
            ++  SLA A
Sbjct: 514 -VIYTSLAYA 522



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           +EA  V + M   G  P +     L+ +  ++ L     K++ +M   G   N+  YN+L
Sbjct: 147 QEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVL 206

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SV 532
           I    + G++E A  L   M  K V PD  TY +L+   C++     A  V ++     +
Sbjct: 207 IHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGI 266

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
             D++   S++  F    C+ G    A +L + +     +  ++  L+       +++ A
Sbjct: 267 KPDIVTYNSLIHGF----CKEGRMREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQA 322

Query: 593 I 593
           +
Sbjct: 323 L 323


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/526 (22%), Positives = 219/526 (41%), Gaps = 62/526 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y  +++      ++   +S+L++++      D  VY  +I       N  KA ++ +E
Sbjct: 290 FAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDE 349

Query: 145 -----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
                VK NC      I +S+L  L+  G        F E    G+ F    + V +   
Sbjct: 350 MVSKGVKTNCV-----ILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDAL 404

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+  K+ + + +L E++ ++  M+   +    +I G+    +V +A  +  E++    KP
Sbjct: 405 CKLGKVEEAVELLVEMKGKK--MVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKP 462

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI------- 312
           D + Y ++A  F   G   E   +L      GV P T  +   I GL +  ++       
Sbjct: 463 DIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFF 522

Query: 313 ------------------CEAKELGEVIV-------SGKFTIDDDVLNALIGSVSSIDPR 347
                             CEA  + +           G+          L    S  D  
Sbjct: 523 DNLEEKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSE 582

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+     M+     PT+   S +   L +  + ++   V+ +L       D+ +Y +M+
Sbjct: 583 KALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMI 642

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----------------EDLL 451
           +  C   +++EA+ V+ +MK +G++PDV  Y  L+  C +                E+++
Sbjct: 643 NGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMM 702

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            P+  LW +M       ++  Y +LI K  +   I+ A+ LF+ M+++G+APD  TYT+L
Sbjct: 703 DPSA-LWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTAL 761

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL-CRRGHF 556
           L G C   N++ A  +F++ +N  +      +S     L  R+ HF
Sbjct: 762 LSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVLHCILKVRKVHF 807



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 129/558 (23%), Positives = 231/558 (41%), Gaps = 79/558 (14%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           SLA  +FN   ++  ++H P +Y +I++ L        +DS+L ++      LD  +   
Sbjct: 74  SLAFSYFNQL-KESGYSHDPYTYAAIVRILCFWGWSRKLDSILMEIIKKDGNLDFGIVNL 132

Query: 125 ----------------------IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSL 160
                                 +I   +      +AF V  + K +C    P+I  CN L
Sbjct: 133 FEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTK-HC-GFAPQILSCNFL 190

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +  L     +D A+ ++ ++   G+  +   + + I  FC    L + + +  ++   E+
Sbjct: 191 MNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDME--ES 248

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +   S      I G C   R +  FKVL ++   +   D  AY +V   F     + E 
Sbjct: 249 GVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEA 308

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           E +L++  K G AP    Y   I G                               ++G+
Sbjct: 309 ESILREMEKQGFAPDVYVYCALISGY-----------------------------CMVGN 339

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +       A+   + M+ KG       LS++ + L +   + E+   +K       F D 
Sbjct: 340 L-----LKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDE 394

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             YNV++  LC  G++ EA  ++ EMK K + PD+  Y +++     +  +  A  ++ +
Sbjct: 395 ACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYRE 454

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC---Q 517
           M   G   ++ TYN+L   FS  G  + AL L + M  +GV PD  T+  ++EGLC   +
Sbjct: 455 MKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGK 514

Query: 518 ETNLQAAFEVFNKSV--NHDVML-----ARSILSTF--MISLCRRGHFLVAT---KLLRG 565
             + QA F+   +    N+  M+     A  +   F  +I L ++G  L      KLL  
Sbjct: 515 VDDAQAFFDNLEEKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGN 574

Query: 566 LSSDLGHSDSHVILLKSL 583
           L S+ G S+  + LL+++
Sbjct: 575 LCSE-GDSEKALCLLETM 591



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 205/477 (42%), Gaps = 50/477 (10%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++   T +  SY + ++ L L  + +    VL+ V   KI +D   Y  +I         
Sbjct: 246 EESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKL 305

Query: 136 QKAFSVFNEVKFNCEDIGPEI---CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           ++A S+  E++   +   P++   C +L++     G +  AL + DEM  +GV+ + +  
Sbjct: 306 KEAESILREMEK--QGFAPDVYVYC-ALISGYCMVGNLLKALALHDEMVSKGVKTNCVIL 362

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              +    +     +V +   E +K    +        +++   CK  +VEEA ++L E+
Sbjct: 363 SSILQGLSQMGMASEVANQFKEFKKM--GIFFDEACYNVVMDALCKLGKVEEAVELLVEM 420

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           + ++  PD I Y  V   + L G V +   + ++ + +G  P    Y             
Sbjct: 421 KGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYN------------ 468

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
                    +++G F+      N L         + A+   N+M  +G  P   T + + 
Sbjct: 469 ---------VLAGGFS-----RNGL--------TQEALSLLNYMETQGVKPDTVTHNMII 506

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           + LC   K D+    +  L        +E+Y+ MV+  C +  + +A+ ++  + ++G  
Sbjct: 507 EGLCIGGKVDDAQAFFDNLEEKC----LENYSAMVNGYCEANHVNKAFALLIRLSKQGRI 562

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
              + +  L+   C E     A  L + M A   +  +  Y+ +I    + GE+E A  +
Sbjct: 563 LKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYV 622

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILST 545
           F+ ++++G+APD  TYT ++ G C+   ++ A+ V     N+ +  DV+    +L+ 
Sbjct: 623 FNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNN 679



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N + E      + TL+NL      RN+       +  L  + Y  D  +Y  +V  LC  
Sbjct: 52  NHLFEINTAKVVITLNNL------RNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFW 105

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYN----------------------SLMEACCREDLL 451
           G  R+   ++ E+ +K  + D    N                      +L++ C    + 
Sbjct: 106 GWSRKLDSILMEIIKKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMF 165

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  +  Q    G +  + + N L+++  E  +++ A+ ++  +   G+ P+  TYT  
Sbjct: 166 DQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIA 225

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           ++G C++ NL  A +VF       V       +TF+  LC  G   +  K+L+
Sbjct: 226 IKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQ 278


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 195/444 (43%), Gaps = 12/444 (2%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           L R  +A+ ++L+ +  +    D+ +Y+ +I +L+      +A ++ +E+          
Sbjct: 193 LGRARDAL-ALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVN 251

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N ++  L   G++  A ++ D M   G   S + +G  +   C   +  +  +ML  V
Sbjct: 252 TFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRV 311

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            +    M+N       +I G     ++  A ++ + +  + C PD   Y I+      +G
Sbjct: 312 PEVNVVMLN------TVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLG 365

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                  +L +  + G AP    Y   +          +A+ + + + +  F+++    N
Sbjct: 366 RCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYN 425

Query: 336 ALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            +I   G    +D   A+     M  +G  P + T + +  +LC  ++ DE   ++  L 
Sbjct: 426 GIIYALGKDGKLD--EAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLL 483

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +  +YN ++  L  SGR +E   +  EM   G   DV  YN L++A C+E  + 
Sbjct: 484 EEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVD 543

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            +  L ++M   G   N  +YN+LI++  + G++  AL L   ML +G+ PD  TY +L+
Sbjct: 544 RSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLI 603

Query: 513 EGLCQETNLQAAFEVFNKSVNHDV 536
            GLC+     AA  +  K  N +V
Sbjct: 604 NGLCKVGWTHAALNLLEKLPNENV 627



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 177/423 (41%), Gaps = 40/423 (9%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G   +AL +   M+  G     + +   I        + +  ++LDE+      ++ G  
Sbjct: 194 GRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEM------LLMGCA 247

Query: 228 IAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY----------RIVAEEFKL 273
             V     ++ G C    V EA +++D + +  C P  + Y          R   E + +
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAM 307

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +G V E  VV+                  I G + E ++  A EL E++ S     D   
Sbjct: 308 LGRVPEVNVVM--------------LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHT 353

Query: 334 LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N L+  +  +    SA+   + M EKG  P + T S L  + C+    D+   +   +S
Sbjct: 354 YNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMS 413

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           A  +  + + YN ++  L   G+L EA  ++QEMK +G  PD+  YN+++   C  D + 
Sbjct: 414 AKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMD 473

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+ ++  +   G   N  TYN LI      G  +  LRL + M+  G   D  +Y  L+
Sbjct: 474 EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLI 533

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLS 567
           + LC+E N+  +  +  + +   +       +  +  LC+ G    A +L +     GL+
Sbjct: 534 KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 593

Query: 568 SDL 570
            D+
Sbjct: 594 PDI 596



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 146/323 (45%), Gaps = 7/323 (2%)

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C+  R  +A  +L  +    C PD + Y+ V       G V E   +L +   +G A  
Sbjct: 190 LCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
            N + + +LGL     + EA  L + ++    T        L+  +     R A   +  
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRT--RQADEAYAM 307

Query: 356 MIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           +   GRVP ++   L+ + +      K     E+Y+++ +     D+ +YN+++  LC  
Sbjct: 308 L---GRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKL 364

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR   A  ++ EM+ KG  P++  Y++L+ + CR  +   A+ + DQM A G S N + Y
Sbjct: 365 GRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGY 424

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N +I    + G+++ A+RL   M  +G  PD  TY +++  LC    +  A  +F   + 
Sbjct: 425 NGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLE 484

Query: 534 HDVMLARSILSTFMISLCRRGHF 556
             V+      +T + +L   G +
Sbjct: 485 EGVVANGITYNTLIHALLHSGRW 507



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 193/450 (42%), Gaps = 64/450 (14%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           T S ++Y  +L+ L  +RQ +   ++L +V +VN + L++     I   L +GK   +A 
Sbjct: 282 TPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNT----VIRGCLAEGK-LARAT 336

Query: 140 SVFNEVKFNCEDIGPEIC-------NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            ++       E +G + C       N L+  L   G   +A++M DEM  +G   + + +
Sbjct: 337 ELY-------EMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTY 389

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKV 248
              +  FC N       +MLD++  +  SM     NG      II+   K  +++EA ++
Sbjct: 390 STLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNG------IIYALGKDGKLDEAMRL 443

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           + E++ + CKPD   Y  +         + E E +     + GV      Y   I  L+ 
Sbjct: 444 VQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLH 503

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             R  E   L   +V     +D                   +V +N +I           
Sbjct: 504 SGRWQEGLRLANEMVLHGCPLD-------------------VVSYNGLI----------- 533

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
               K LCK    D  + + + +       +  SYN++++ LC +G++R+A  + +EM  
Sbjct: 534 ----KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLN 589

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +GL PD+  YN+L+   C+      A  L +++       ++ TYNILIS   +V  ++ 
Sbjct: 590 QGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDD 649

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           A  L    +  G+ P+  T+  +++   ++
Sbjct: 650 ASMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 6/202 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ V    LC  GR R+A  +++ M R G  PD   Y +++ A   +  +  A  L D+M
Sbjct: 182 TFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEM 241

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC+ ++ T+N ++     +G +  A RL   M+  G  P   TY  LL GLC+    
Sbjct: 242 LLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQA 301

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A+ +  +    +V++    L+T +      G    AT+L   + S     D H   IL
Sbjct: 302 DEAYAMLGRVPEVNVVM----LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNIL 357

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
           +  L        A+  +  ++E
Sbjct: 358 MHGLCKLGRCGSAVRMLDEMEE 379


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 152/594 (25%), Positives = 243/594 (40%), Gaps = 94/594 (15%)

Query: 60  LLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLS-LSRQINAIDSVL---KQVKVNKI 115
           LL   + AL FFNW         SPL   ++       SR+ N+ + +L   K  K +KI
Sbjct: 96  LLGSTAKALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLFKTSKSHKI 155

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG-PEICNSLLAVLASDGYIDNAL 174
            L  +    +I    + +   ++F V+NE+   C       I N L+ VL   G +D+AL
Sbjct: 156 PLSVNAATLLIRCFGRAQMVDESFLVYNEL---CPSRRLTHIRNILIDVLFRKGRVDDAL 212

Query: 175 KMFDEMSHRGVEF---STIGFGVF----------------------------------IW 197
            + DEM     EF   S  G  VF                                  IW
Sbjct: 213 HLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIW 272

Query: 198 ------KFCENA-------------KLGQV---------LSMLDEVR--KRENSMI---- 223
                 + C +              KLG V         L+ L   R  KR N+++    
Sbjct: 273 LTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMK 332

Query: 224 ------NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-----CKPDFIAYRIVAEEFK 272
                 N     +LI H  CK +RV+EA +V +++   E      +PD I Y  + +   
Sbjct: 333 EMDIQPNVVTFGILINH-LCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLC 391

Query: 273 LMGSVFEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            +G   E   ++++ R +    P T  Y   I G      I  A+EL + +       + 
Sbjct: 392 KVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNV 451

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             LN L+ G         A+ FFN M  KG      T + L +  C  N  ++ +E++  
Sbjct: 452 VTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDE 511

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +       D   Y  ++S L  +G+L  A  V+ +MK  G  PD+  +N L+   CR++ 
Sbjct: 512 MLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNK 571

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A ++  +M  +G   +  TYN LIS FS+ G+   A RL   M+++G+ P   TY +
Sbjct: 572 LDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGA 631

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLL 563
           L+   C   NL  A ++F    +   +   +++   +I SLCR+    +A  L+
Sbjct: 632 LIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLM 685



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 195/451 (43%), Gaps = 33/451 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           S +++L +L  +R+   ++++L ++K   I  +   +  +I  L + +   +A  VF ++
Sbjct: 307 SCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                  G E          S+G++              VE   I +   I   C+  + 
Sbjct: 367 N------GGE----------SNGFL--------------VEPDVITYNTLIDGLCKVGRQ 396

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            + L +++ +R +   M N +V    +I G+CK   +E A ++ D++      P+ +   
Sbjct: 397 EEGLGLVERMRSQPRCMPN-TVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +     G +        + +  G+      Y   I        I +A EL + ++  
Sbjct: 456 TLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVF-FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
             + D  V   LI  +S         F  + M E G  P + + + L    C++NK DE 
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+ K +       D  +YN ++S    +G    A+ ++++M ++GL P V  Y +L+ A
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635

Query: 445 CCREDLLRPAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
            C    L  A K++  M + S    N   YNILI+      +++ AL L  +M  KGV P
Sbjct: 636 YCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKP 695

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +  T+ ++ +GL ++  L  AFE+ ++   H
Sbjct: 696 NTNTFNAMFKGLQEKNWLSKAFELMDRMTEH 726



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 151/326 (46%), Gaps = 9/326 (2%)

Query: 167 DGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           DGY     I+ A ++FD+M+  GV  + +     +   C++ ++   +   +E++ +   
Sbjct: 424 DGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGK--G 481

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   +V    +I  FC    +E+A ++ DE+    C PD I Y  +       G +    
Sbjct: 482 LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRAS 541

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            VL K ++ G +P    +   I G   + ++ EA E+ + + +     D    N LI   
Sbjct: 542 FVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHF 601

Query: 342 SSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-D 399
           S   D  +A      M+++G VPT+ T   L    C     DE +++++ +S+      +
Sbjct: 602 SKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPN 661

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
              YN++++ LC   ++  A  ++ +MK KG+ P+ + +N++ +    ++ L  A +L D
Sbjct: 662 TVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMD 721

Query: 460 QMFASGCSGNLKTYNILISKFSEVGE 485
           +M    C+ +  T  IL    S VGE
Sbjct: 722 RMTEHACNPDYITMEILTEWLSAVGE 747


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 188/404 (46%), Gaps = 8/404 (1%)

Query: 158 NSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N +L  L   G    AL++F  EM+  GV  + + +   I   C++ +LG  + + +E+ 
Sbjct: 49  NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 108

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           KR +      V    +I   CK   +EEA ++   +  R C P+ + Y ++      +G 
Sbjct: 109 KRGHH--PDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR 166

Query: 277 VFE-REVVLKKKRK-LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           + E RE++ +  RK   V P    Y  F+ GL  +    EA EL   +  G   +  D +
Sbjct: 167 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 226

Query: 335 --NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             + LI  +     ++     + MI  G VP + T + L   LCK +K +    + + + 
Sbjct: 227 TFSTLIDGLCKCG-QTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMV 285

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+V+V   C + R+ EA  ++  M  +G  P+V  +NS+++  C+ D   
Sbjct: 286 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 345

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A ++  Q++      +  T+NILI+   + G  E A  LF  M+ K + PD  T+ +L+
Sbjct: 346 EAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI 405

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +GLC+   ++AA ++ +   N  V       +  +  LC+ G  
Sbjct: 406 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 215/494 (43%), Gaps = 40/494 (8%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  ++ SL +   T +A  +F   +   + + P I   N+++  L     +   +++F+E
Sbjct: 48  YNIVLQSLCRAGETARALEIFRG-EMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEE 106

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM-----INGSVIAVLIIH 234
           +  RG     + +   I   C+   L       +E R+    M     +   V   ++I+
Sbjct: 107 LVKRGHHPDVVTYNTLIDSLCKAGDL-------EEARRLHGGMSSRGCVPNVVTYSVLIN 159

Query: 235 GFCKGKRVEEAFKVLDELRIRECK--PDFIAYR----------IVAEEFKLMGSVFEREV 282
           G CK  R++EA +++ E+  + C   P+ I Y           + AE  +LM S+     
Sbjct: 160 GLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL----- 214

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
              +   L V+P T  +   I GL    +  EA    + +++G +  +    NAL+  + 
Sbjct: 215 ---RDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLC 269

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             D    A      M++KG  P + T S L    CK ++ DE +E+   +++     ++ 
Sbjct: 270 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 329

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N ++  LC S R  EA+ +  ++  + L PD   +N L+   C+      A  L+++M
Sbjct: 330 TFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEM 389

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A     ++ T+  LI    + G++E A  +   M   GV P+  TY  L+ GLC+   +
Sbjct: 390 VAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
           +   E   + V+   +       + + +LCR      A +L+  L S     D  ++ IL
Sbjct: 450 EEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNIL 509

Query: 580 LKSLADAREVEMAI 593
           +  L  + + E AI
Sbjct: 510 VDGLWKSGKTEQAI 523



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 212/514 (41%), Gaps = 31/514 (6%)

Query: 44  RDSLSPSLVA--RVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           RD ++P++V    +IN  L   + L  G      +     H P  ++Y++++ SL  +  
Sbjct: 74  RDGVAPTIVTYNTIING-LCKSNELGAGM-ELFEELVKRGHHPDVVTYNTLIDSLCKAGD 131

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-- 157
           +     +   +       +   Y  +I  L +     +A  +  E+     D+ P I   
Sbjct: 132 LEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEV 215
           NS L  L        A ++   +    +  S  T+ F   I   C   K GQ     DE 
Sbjct: 192 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC---KCGQT----DEA 244

Query: 216 RKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
               + MI G  +  ++     ++G CK  ++E A  +++ +  +   PD I Y ++ + 
Sbjct: 245 CN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDA 302

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           F     V E   +L      G  P    +   I GL    R  EA ++   + +     D
Sbjct: 303 FCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPD 362

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               N LI G+  + +   A   F  M+ K   P + T   L   LCK  + +   ++  
Sbjct: 363 KVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILD 422

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           ++       ++ +YNV+V  LC SGR+ E    ++EM   G  P+   Y SL+ A CR  
Sbjct: 423 LMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRAS 482

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
               A +L  ++ + G   +  TYNIL+    + G+ E A+ +   M+ KG  PD+ T+ 
Sbjct: 483 RTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFA 542

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           +   GL +  NL    E+        V+LA+ +L
Sbjct: 543 ACFGGLHRSGNLAGTMELLR------VVLAKGML 570



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHN-MLEKGVAPDATTYTSLLEGLCQETN 520
           F    S ++  YNI++      GE   AL +F   M   GVAP   TY +++ GLC+   
Sbjct: 37  FVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNE 96

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVI 578
           L A  E+F + V           +T + SLC+ G    A +L  G+SS   + +  ++ +
Sbjct: 97  LGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSV 156

Query: 579 LLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610
           L+  L     ++ A E I+ +   S  +L  I
Sbjct: 157 LINGLCKVGRIDEARELIQEMTRKSCDVLPNI 188


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++ GFCK +++  A  +L+++ +  C PD I Y  +       G   +     + + + 
Sbjct: 97  MMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRR 156

Query: 291 GVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDP--R 347
           G  P    Y   I  +        A E L ++ + G +  D    N+L+   S       
Sbjct: 157 GCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYP-DLVTYNSLVNFASKEGKYED 215

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           +A++ +N ++  G  P   T ++L  +LC     DE+ E+  ++    +   + +YN+++
Sbjct: 216 AALIIYN-ILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILI 274

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           + LC  G +  A     +M  +   PD+  YN+L+ A C+E ++  A +++  +  S CS
Sbjct: 275 NGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCS 334

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             L TYN +I   +  G ++ AL+L++ M+EKG+APD  T+ SL+ G C    ++ A E+
Sbjct: 335 PGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEI 394

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
             +    D  +  S     +  LCR     +A ++L  + S     D  +   L+KS+AD
Sbjct: 395 LREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVAD 454

Query: 586 AREVEMAIE-HIKWIQ 600
           A  VE A E H K I+
Sbjct: 455 AGMVEEADELHQKLIE 470



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 164/374 (43%), Gaps = 13/374 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+H  CK   + EA K++D +      P+      +      +G +     VLK     G
Sbjct: 28  ILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSG 87

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
           + P    Y   + G    R++  A +L E +       D    N +I S+      D   
Sbjct: 88  LVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFD--Q 145

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ F+   + +G +P L   + L + + K   +   +EV + ++    + D+ +YN +V+
Sbjct: 146 AVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVN 205

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           F    G+  +A  +I  +   G++P+   YNSL+ + C   L     ++   M  +    
Sbjct: 206 FASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPP 265

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TYNILI+   + G +E A+  F  M+ +  +PD  TY +LL  LC+E  +  A +VF
Sbjct: 266 TVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVF 325

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSL 583
               + +        +T +  L RRG+   A KL      +G++ D     +H  L+   
Sbjct: 326 VLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPD---GITHRSLVWGF 382

Query: 584 ADAREVEMAIEHIK 597
               +VE A+E ++
Sbjct: 383 CWIDQVEDAVEILR 396



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 191/460 (41%), Gaps = 15/460 (3%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H++ K  SL      ID +    +VN+I  +S+    +I  L++    ++A  V   +  
Sbjct: 30  HNLCKKGSLMEATKLIDIM---SRVNQIP-NSTCSTNLIRGLVRIGRIERASRVLKTMVM 85

Query: 148 NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +   + P++   N ++        + +A+ + ++MS  G     I +   I    +N K 
Sbjct: 86  S--GLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKF 143

Query: 206 GQVLSML-DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            Q +     ++R+     +    I + ++   C   R   A +VL+++ I  C PD + Y
Sbjct: 144 DQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVR---ALEVLEDMAIEGCYPDLVTY 200

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +       G   +  +++      G+ P    Y   +  L       E  E+  ++  
Sbjct: 201 NSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKK 260

Query: 325 GKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                     N LI  +        AI FF  M+ +   P + T + L   LCK    DE
Sbjct: 261 TSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDE 320

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            ++V+ +LS ++    + +YN ++  L   G + EA  +  +M  KG+ PD   + SL+ 
Sbjct: 321 ALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVW 380

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C  D +  A ++  +M       N   Y ++I+       ++ A+++   M+     P
Sbjct: 381 GFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKP 440

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           D   Y++L++ +     ++ A E+  K +   V+  R+IL
Sbjct: 441 DEEIYSTLIKSVADAGMVEEADELHQKLIERKVL--RTIL 478



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D E+ N ++  LC  G L EA  +I  M R    P+ +   +L+    R   +  A ++ 
Sbjct: 21  DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             M  SG   ++ TYN+++  F +  ++  A+ L  +M   G  PD  TY +++  L   
Sbjct: 81  KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDN 140

Query: 519 TNLQAAFEVF 528
                A E +
Sbjct: 141 GKFDQAVEFW 150



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 439 NSLMEACCREDLLRPAKKLWD------QMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           N ++   C++  L  A KL D      Q+  S CS NL      I     +G IE A R+
Sbjct: 26  NEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNL------IRGLVRIGRIERASRV 79

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMI 548
              M+  G+ PD  TY  ++ G C+   L++A ++           DV+   +I+     
Sbjct: 80  LKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIR---- 135

Query: 549 SLCRRGHFLVATKLLRG 565
           SL   G F  A +  RG
Sbjct: 136 SLFDNGKFDQAVEFWRG 152


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 130/580 (22%), Positives = 224/580 (38%), Gaps = 115/580 (19%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  F + +    F H+PL+YH +++ L  + +++A+  +L Q+K+ +I      +  ++
Sbjct: 56  ALQHFQYLTNTLAFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVL 115

Query: 127 PSLIQGKNTQKAFSVFNEVK-FNC----------------------------------ED 151
            S        +A  +F  +K F C                                  E 
Sbjct: 116 NSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEG 175

Query: 152 IGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           + P +   N LL  L  +G +D A K+  EMS RG     + +   +   CE+ ++ +  
Sbjct: 176 MEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEA- 234

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
               EV +R  +    SV   LI  G C+  RV E F ++DE+      P+ ++Y  V  
Sbjct: 235 ---REVARRFGAEGVVSVCNALIC-GLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVIS 290

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV----SG 325
               +G V     VL K  + G  P  + +   + G  +  R+ E   L  V+V      
Sbjct: 291 WLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRP 350

Query: 326 KFTIDDDVLNALI---------------------------------GSVSSIDPRSAIVF 352
              + + +LN L                                  G V + D + A   
Sbjct: 351 NVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEV 410

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +N M+  G  P +   +++   LCK +  D+   +   ++ +     + ++N  +  LC 
Sbjct: 411 WNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCC 470

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            GR+  A  V+ +M+R G  PD   YN L++     + L+ A +L  ++       NL T
Sbjct: 471 GGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVT 530

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT------------------------- 507
           YN ++  FS  G+ E  L++   ML  GV PDA T                         
Sbjct: 531 YNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRIT 590

Query: 508 -----------YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
                      +TSLL G+C    ++ A    NK +N  +
Sbjct: 591 AGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGI 630



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 127/297 (42%), Gaps = 9/297 (3%)

Query: 87  YHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           Y+++L  L  S  +  A+D   +  K      + + Y  ++   ++  + Q A  V+N++
Sbjct: 355 YNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKM 414

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             NC  + P +    S++ VL  +   D A ++ D M+  G   + + F  FI   C   
Sbjct: 415 -VNC-GVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGG 472

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           ++   + ++D++++     +  +     ++ G      ++EA +++ EL  R+ + + + 
Sbjct: 473 RVLWAMRVVDQMQRY--GCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVT 530

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  V   F   G       VL +    GV P        I       ++  A +  + I 
Sbjct: 531 YNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRIT 590

Query: 324 SGKFTIDDDVLNA--LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +GK    D + +   L G  +S+    AIV+ N M+ KG  P ++T   L +   K+
Sbjct: 591 AGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFKK 647



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 98/229 (42%), Gaps = 7/229 (3%)

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R N ++  S++ VL     CK    ++A++++D +    C P  + +    +     G V
Sbjct: 420 RPNVVVYTSMVDVL-----CKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRV 474

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                V+ + ++ G  P T  Y E + GL     + EA EL   +   K  ++    N +
Sbjct: 475 LWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTV 534

Query: 338 IGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSAND 395
           +   SS      ++     M+  G  P   T++ +     K  K    ++   ++ +  +
Sbjct: 535 MYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKE 594

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
              D+ ++  ++  +C S  + EA   + +M  KG+ P+++ ++ L+  
Sbjct: 595 LCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRG 643


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 135/562 (24%), Positives = 244/562 (43%), Gaps = 56/562 (9%)

Query: 47  LSPSLVARVI-NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           LSPS V+ ++ +  L T   +A+ FF WA +Q  +TH+   Y S++  L+ +  ++++ S
Sbjct: 106 LSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKS 165

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           V  + K  ++ L  +VY                                   NSL+    
Sbjct: 166 VFSKFK--EMGLIMTVYS---------------------------------SNSLIKSFG 190

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGF-----GVFIWKFCENAKLGQVLSMLDEVRKREN 220
           + G ++  L ++  M   G+E S   +     G+   KF E+A+  +V  ++      EN
Sbjct: 191 NLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAE--RVFEVM------EN 242

Query: 221 SMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             I   V+    +I G+C+  +  +AF+ L  + +R   PD I Y  + +     G    
Sbjct: 243 GKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDS 302

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +  +  + G+    + Y   I GL  + +  E   + E ++S     +  +  ALI 
Sbjct: 303 CLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALID 362

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           S +   +   A++ F  M ++G  P   T   +  +LCK  + DE +E  +  S      
Sbjct: 363 SNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAV 422

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +   Y+ ++  L  SGR+ EA  +  EM +KG  PD   YN+L++A  +   +  A  L 
Sbjct: 423 NAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALS 482

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M   GC   + TY ILI+        E AL L+  M++KG+ P A  + +L  GLC  
Sbjct: 483 KRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLS 542

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH---SDS 575
             +  A ++ ++     V +  +     +  LC+ G    A KL  G+  D G       
Sbjct: 543 GKVARACKILDEMAPMGV-IPETAFDDMINILCKAGRIKEACKLADGI-VDRGREIPGRV 600

Query: 576 HVILLKSLADAREVEMAIEHIK 597
             +L+ +L  A   ++A++ ++
Sbjct: 601 RTVLINALRKAGNADLALKLMR 622


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 221/491 (45%), Gaps = 10/491 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y +++  L  SR+ N   ++L ++   ++  +  VY  +I   ++  N  +AF +  E
Sbjct: 188 FTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKE 247

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            ++L+  L   G +D A  +  +M        TI + + I     +  
Sbjct: 248 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHN 307

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                 +L E+   EN+ I+ +V    ++IHG C+    E+A  +L+E+  +  KP+   
Sbjct: 308 KKDAFRLLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 364

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   +   G+V     +  K  K+ V P    Y   I GL    R+ E+ +    + 
Sbjct: 365 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 424

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 ++   + LI G + + D  SA      M++ G  P      +L ++  K +  +
Sbjct: 425 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIE 484

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           ++   +K +       D   Y +++  L +SG +  A+ V+ E+++ G  PDV  Y+SL+
Sbjct: 485 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLI 544

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+      A  + D+M   G   N+  YN LI    + G+I  A  +F+++L KG+ 
Sbjct: 545 SGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV 604

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSILSTFMISL--CRRGHFL 557
           P+  TYTSL++G C+  ++  AF ++N+ +   +       S+L+T   S     +  FL
Sbjct: 605 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFL 664

Query: 558 VATKLLRGLSS 568
           +    LRG +S
Sbjct: 665 IEEMFLRGHAS 675



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 176/408 (43%), Gaps = 3/408 (0%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A K+  EM  RG   +T+ + V I   C +  + +      ++   +  ++       
Sbjct: 134 DTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME--DYGLVPDGFTYG 191

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G CK +R  EA  +LDE+   E KP+ + Y  + + F   G+  E   ++K+    
Sbjct: 192 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 251

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV P    Y   + GL    ++  A  L + +V      D    N +I G     + + A
Sbjct: 252 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDA 311

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               + M   G  P + T S +   LC+  + ++  ++ + ++      +   Y  ++S 
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G +  A  +  +M +  + PD+  YNSL+    +   +  + K + QM   G   N
Sbjct: 372 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 431

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ LI  + + G++E A +L   ML+ G+ P+   Y  LLE   +  +++     F 
Sbjct: 432 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 491

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
             ++  VML   I    + +L   G+   A ++L  +  +    D HV
Sbjct: 492 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV 539



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 183/439 (41%), Gaps = 3/439 (0%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           I+ D   Y  +I +  + +    A  V  E++     +     N L+A L   G ++ A 
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
               +M   G+      +G  I   C++ +  +  ++LDE+   E  +    V+   +I 
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE--LKPNVVVYANLID 230

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GF +    +EAFK++ E+     +P+ I Y  +      MG +    ++LK+  +    P
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
            T  Y   I G        +A  L   + +   + +    + +I G   S +P  A    
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 350

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M  KG  P     + L    C+        E++  ++  +   D+  YN ++  L   
Sbjct: 351 EEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 410

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR+ E+     +M+ +GL P+   Y+ L+    +   L  A++L  +M  +G   N   Y
Sbjct: 411 GRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             L+  + +  +IE     F +ML++GV  D   Y  L+  L    N++AAF V ++   
Sbjct: 471 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK 530

Query: 534 HDVMLARSILSTFMISLCR 552
           +  +    + S+ +  LC+
Sbjct: 531 NGSVPDVHVYSSLISGLCK 549



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 126/549 (22%), Positives = 225/549 (40%), Gaps = 36/549 (6%)

Query: 43  LRDSLSP-SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           +RDS  P ++   +I      HH+     F   S+  N   SP   +Y  ++  L  S +
Sbjct: 284 VRDSHRPDTITYNLIIEGHFRHHNKK-DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 342

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-C- 157
                 +L+++    +  ++ VY  +I    +  N   A  +F+  K    ++ P++ C 
Sbjct: 343 PEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD--KMTKVNVLPDLYCY 400

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+  L+  G ++ + K F +M  RG+  +   +   I  + +N  L     ++   R 
Sbjct: 401 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ--RM 458

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  +    VI + ++  + K   +E+       +  +    D   Y I+       G++
Sbjct: 459 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 518

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
                VL +  K G  P  + Y   I GL   +     K  G +    K  +D +++  N
Sbjct: 519 EAAFRVLSEIEKNGSVPDVHVYSSLISGLC--KTADREKAFGILDEMSKKGVDPNIVCYN 576

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI G   S D   A   FN ++ KG VP   T ++L    CK         +Y  + A 
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D   Y+V+ +   ++G L +A  +I+EM  +G    +S +N+L++  C+   ++  
Sbjct: 637 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQET 695

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEI---------------EGALR----LFHN 495
            KL   +   G   N  T   +IS  SE G++               E A R    LF +
Sbjct: 696 LKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD 755

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+ +G  P       ++   C+E NL  A  + +  V     +  S     + +LCR+G 
Sbjct: 756 MINQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGK 814

Query: 556 FLVATKLLR 564
              A  LL+
Sbjct: 815 LSEALNLLK 823



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%)

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           FM+  G  P + T S L +  CK  + D   +V   +       +  +YNV+++ LC SG
Sbjct: 107 FMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 166

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            + EA+G  ++M+  GL PD   Y +L+   C+      AK L D+M  +    N+  Y 
Sbjct: 167 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 226

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            LI  F   G  + A ++   M+  GV P+  TY +L+ GLC+   +  A
Sbjct: 227 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 276



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 24/364 (6%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  +L+S   S  I  + S  K +    + LD+ +Y  +I +L    N + AF V +E++
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N       + +SL++ L      + A  + DEMS +GV+ + + +   I   C++  + 
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 589

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
              ++ + +  +   ++   V    +I G CK   +  AF + +E+      PD   Y +
Sbjct: 590 YARNVFNSILAK--GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 647

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV--- 323
           +       G + E+ + L ++  L      + +   + G     ++ E  +L  VI+   
Sbjct: 648 LTTGCSSAGDL-EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRG 706

Query: 324 -----------------SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                            +GK +    +   L    S    R     F  MI +G++P L 
Sbjct: 707 LVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP-LD 765

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
            + ++ ++ CK    D+ + +  V+ A        SY  +V  LC  G+L EA  +++EM
Sbjct: 766 VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 825

Query: 427 KRKG 430
            ++G
Sbjct: 826 DKRG 829



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 158/383 (41%), Gaps = 21/383 (5%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPD------FIAYRIVAEEFKLMGSVFEREVVL 284
           +++  + K  RV++A +V+  +R R   P        +   + A+   L+  V  RE ++
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKV--REFMV 109

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
                 G++P    Y   I      R    AK++   +      ++    N LI G   S
Sbjct: 110 GA----GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRS 165

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A  F   M + G VP   T   L   LCK  +S+E   +   +S  +   ++  Y
Sbjct: 166 GAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 225

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++      G   EA+ +I+EM   G+ P+   Y++L+   C+   +  A  L  QM  
Sbjct: 226 ANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVR 285

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
                +  TYN++I         + A RL   M   G++P+  TY+ ++ GLCQ    + 
Sbjct: 286 DSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEK 345

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-----DLGHSDSHVI 578
           A ++  +     +     + +  +   CR G+  +A ++   ++      DL   +S   
Sbjct: 346 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS--- 402

Query: 579 LLKSLADAREVEMAIEHIKWIQE 601
           L+  L+    VE + ++   +QE
Sbjct: 403 LIFGLSKVGRVEESTKYFAQMQE 425



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 67/122 (54%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +V+V     SGR+++A  V+  M+ +GL P +   N+L++   R D +    K+ + M  
Sbjct: 51  DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVG 110

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +G S ++ TY+ LI  + +V E + A ++   M E+G   +  TY  L+ GLC+   ++ 
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 524 AF 525
           AF
Sbjct: 171 AF 172


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 36/379 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++   +S G I+ A ++ D M  +G+E  +  +G  I   C+  +L +   + D++  
Sbjct: 212 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV- 270

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  +V    +I G+C    +E AF   DE+  +   P    Y ++     + G +
Sbjct: 271 -EIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 329

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + ++K+ RK G+ P    Y   I G     R   AK                     
Sbjct: 330 GEADDMIKEMRKKGIIPDAITYNILINGY---SRCGNAKR-------------------- 366

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                      A    N M+ KG  PT  T ++L   L +RN+  E  ++++ +      
Sbjct: 367 -----------AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+  +N M+   C +G +  A+ +++EM RK + PD   +N+LM+  CRE  +  A+ L
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 475

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M   G   +  +YN LIS +   G+I+ A  +   ML  G  P   TY +L++ LC+
Sbjct: 476 LDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCK 535

Query: 518 ETNLQAAFEVFNKSVNHDV 536
                 A E+  + VN  +
Sbjct: 536 NQEGDLAEELLKEMVNKGI 554



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 158/346 (45%), Gaps = 9/346 (2%)

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP+ ++Y  +   +   G++     +L   R  G+ P +  Y   I G+  E R+ EA  
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           L + +V      +    N LI G  +  D   A  + + M++KG +P++ST + L   L 
Sbjct: 265 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALF 324

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              +  E  ++ K +       D  +YN++++     G  + A+ +  EM  KG++P   
Sbjct: 325 MEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHV 384

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y SL+    R + ++ A  L++++   G S ++  +N +I      G +E A  L   M
Sbjct: 385 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH- 555
             K V PD  T+ +L++G C+E  ++ A  + ++     +       +T +    RRG  
Sbjct: 445 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDI 504

Query: 556 ---FLVATKLLR-GLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
              F V  ++L  G +  L    ++  L+K L   +E ++A E +K
Sbjct: 505 KDAFXVRDEMLSIGFNPTLL---TYNALIKCLCKNQEGDLAEELLK 547



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 166/417 (39%), Gaps = 42/417 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +GF      +PN     +SY++I+   S    I     +L  ++V  I  DS  Y     
Sbjct: 196 IGFMEGLGFKPNV----VSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY----- 246

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
                                          SL++ +  +G ++ A  +FD+M   G+  
Sbjct: 247 ------------------------------GSLISGMCKEGRLEEASGLFDKMVEIGLVP 276

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           + + +   I  +C    L +  S  DE+ K+   ++       L++H      R+ EA  
Sbjct: 277 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKK--GIMPSVSTYNLLVHALFMEGRMGEADD 334

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           ++ E+R +   PD I Y I+   +   G+      +  +    G+ P    Y   I  L 
Sbjct: 335 MIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLS 394

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
              R+ EA +L E I+    + D  + NA+I G  ++ +   A +    M  K   P   
Sbjct: 395 RRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEV 454

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L +  C+  K +E   +   +       D  SYN ++S     G +++A+ V  EM
Sbjct: 455 TFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEM 514

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              G +P +  YN+L++  C+      A++L  +M   G S +  TY  LI     V
Sbjct: 515 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 571



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAIDSV 106
           P  +T+++L  G+ N    +  F++           S  +Y+ ++ +L +  ++   D +
Sbjct: 276 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 335

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +K+++   I  D+  Y  +I    +  N ++AF + NE+     +       SL+ VL+ 
Sbjct: 336 IKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 395

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              +  A  +F+++  +GV    I F   I   C N  + +   +L E+ ++  S+    
Sbjct: 396 RNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRK--SVPPDE 453

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V    ++ G C+  +VEEA  +LDE++ R  KPD I+Y  +   +   G + +   V  +
Sbjct: 454 VTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDE 513

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
              +G  P    Y   I  L   +    A+EL + +V+   + DD    +LI  + ++D
Sbjct: 514 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVD 572


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/540 (23%), Positives = 232/540 (42%), Gaps = 28/540 (5%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +L+P   +RV+   L     LAL FF WA  +  F H+  +Y  ++  L  +R  +  ++
Sbjct: 95  ALAPIWASRVLVE-LCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANA 153

Query: 106 VLKQVKVNKITLDS------------------SVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           VLK++   +  L S                   V+  +  +LI+    ++A   F +++ 
Sbjct: 154 VLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRK 213

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                 P  CN+LL  L+  G  D + K F +M   G++ S   + + I   C+   L  
Sbjct: 214 FRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEM 273

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
             S+  +++  E       V    +I G  K   ++E   + ++++  +C PD I Y  +
Sbjct: 274 ARSLFTQMK--EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 331

Query: 268 AE---EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
                +F+ M   FE    L + +  G+ P    Y  FI     E  + EA +    +  
Sbjct: 332 INCFCKFERMPKAFE---FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRR 388

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              T ++    +LI  +  + +   A+     +++ G    + T + L   LC+  +  E
Sbjct: 389 VALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKE 448

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             EV++ +       + E+Y  +V     +  +  A  +++EMK K + PD+  Y +++ 
Sbjct: 449 AEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILW 508

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C E  L  AK L  ++  SG + N   Y  L+  + + G+   AL L   ML+ G+  
Sbjct: 509 GLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIA 568

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              TY +L++GLC+   +Q A   F +     +    ++ +  +  LC+   F VA KL 
Sbjct: 569 TEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLF 628



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 195/461 (42%), Gaps = 13/461 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  FT   ++Y+S++        ++    + +Q+K      D   Y  +I    + +  
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERM 341

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            KAF   +E+K N   + P +   ++ +     +G +  A+K F +M    +  +   + 
Sbjct: 342 PKAFEFLHEMKAN--GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT 399

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I   C+   L + L +++E+ +    +    V    ++ G C+  R++EA +V   + 
Sbjct: 400 SLIDANCKAGNLAEALKLVEEILQAGIKL--NVVTYTALLDGLCEEGRMKEAEEVFRAML 457

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                P+   Y  +   F     +   + +LK+ ++  + P    Y   + GL  E R+ 
Sbjct: 458 NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 517

Query: 314 EAKEL-GEVIVSGKFT---IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           EAK L GE+  SG  T   I   +++A   S  + +   A+     M++ G + T  T  
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATE---ALTLLEEMLDLGLIATEVTYC 574

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L   LCK     E +  +  +S      ++  Y  +V  LC +     A  +  EM  K
Sbjct: 575 ALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDK 634

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ PD   Y +L++   +   L+ A  L D+M   G   +L  Y  LI   S  G+++ A
Sbjct: 635 GMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKA 694

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             L   M+ KGV PD   Y  L++       +  A E+ N+
Sbjct: 695 RNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNE 735



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 184/433 (42%), Gaps = 40/433 (9%)

Query: 191 GFGVFIWKFCENAKLGQVLSMLDE-----VRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           GFGVF   F    +LG    ML+E     ++ R+  +         ++H   K  R + +
Sbjct: 184 GFGVFDALFSALIELG----MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLS 239

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI-- 303
            K   ++     K     Y I+ +     G +     +  + ++ G  P    Y   I  
Sbjct: 240 RKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 299

Query: 304 ---LGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSID--PRSAIVFFNFM 356
              LGL+ E  IC  +++ +         D DV+  NALI      +  P+ A  F + M
Sbjct: 300 HGKLGLLDEC-ICIFEQMKDA------DCDPDVITYNALINCFCKFERMPK-AFEFLHEM 351

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK-----VLSANDYFTDMESYNVMVSFLC 411
              G  P + T S      CK     E ++ +       L+ N++     +Y  ++   C
Sbjct: 352 KANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEF-----TYTSLIDANC 406

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G L EA  +++E+ + G+  +V  Y +L++  C E  ++ A++++  M  +G + N +
Sbjct: 407 KAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQE 466

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY  L+  F +  E+E A  +   M EK + PD   Y ++L GLC E+ L+ A  +  + 
Sbjct: 467 TYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEI 526

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LLKSLADARE 588
               +     I +T M +  + G    A  LL  +  DLG   + V    L+  L  +  
Sbjct: 527 KESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM-LDLGLIATEVTYCALIDGLCKSGL 585

Query: 589 VEMAIEHIKWIQE 601
           V+ A+ H   + E
Sbjct: 586 VQEAMHHFGRMSE 598



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF  M   G   ++ T + +   LCK    +    ++  +    +  D+ +YN ++    
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G L E   + ++MK    DPDV  YN+L+   C+ + +  A +   +M A+G   N+ 
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+  I  F + G ++ A++ F +M    + P+  TYTSL++  C+  NL  A ++  + 
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 421

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREV 589
           +   + L     +  +  LC  G    A ++ R +  +    + +++  L+     A+E+
Sbjct: 422 LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEM 481

Query: 590 EMAIEHIKWIQES--SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641
           E A + +K ++E    P +L  +   +   L + S  E   LL+  ++E  +++
Sbjct: 482 EYAKDILKEMKEKCIKPDLL--LYGTILWGLCNESRLEEAKLLIGEIKESGINT 533


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 5/350 (1%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL- 231
           A  +F +M   G + + + +   I   C+  ++ + L +   ++ ++   I+ ++     
Sbjct: 99  AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKD---ISPTIFTYTS 155

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C   R +EA  +L+E+      P+ + + ++ + F   G V   E VLK   ++G
Sbjct: 156 LIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG 215

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           V P    Y   + G  +   + EA++L +V+++     D    + LI G   +     A 
Sbjct: 216 VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAK 275

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             FN MI +G  P   + + L   LC+  +  E  +++K +  N    ++ +Y +++   
Sbjct: 276 QLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGF 335

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G L +A+ + + M+   L P++  YN L+ A C+   L+ A++L+ ++F  G   N+
Sbjct: 336 CKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNV 395

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           + Y  +I+   + G ++ AL  F NM + G  PD  +Y  ++ G  Q  +
Sbjct: 396 QIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKD 445



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 159/339 (46%), Gaps = 1/339 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I+ FC+ +RV+  F VL +      +P  + +  +      +G   +   +       
Sbjct: 15  ILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVAR 74

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSA 349
           G  P    Y   I GL        A  L + +      ++    + LI S+        A
Sbjct: 75  GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F++M  K   PT+ T ++L + LC  ++  E   +   +++ +   ++ ++NV+V  
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDT 194

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G++  A GV++ M   G++PDV  YNSLM        +  A+KL+D M   GC  +
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPD 254

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +Y+ILI+ + +   I+ A +LF+ M+ +G  P+  +Y +L+ GLCQ   L+ A ++F 
Sbjct: 255 VFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFK 314

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
               +  +      +  +   C++G+   A +L R + S
Sbjct: 315 NMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQS 353



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 3/323 (0%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG+ P    +   I GL    +  +A EL + +V+     DD     +I  + 
Sbjct: 32  VLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLC 91

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            I   + A   F  M E G    + T S L  +LCK  + +E ++++  + A D    + 
Sbjct: 92  KIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIF 151

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  ++  LC   R +EA  ++ EM    + P+V  +N L++  C+E  +  A+ +   M
Sbjct: 152 TYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTM 211

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   ++ TYN L+  +S   E+  A +LF  M+ KG  PD  +Y+ L+ G C+   +
Sbjct: 212 TEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRI 271

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVIL 579
             A ++FN+ ++          +T +  LC+ G    A  L + +  + +L +  ++ IL
Sbjct: 272 DEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAIL 331

Query: 580 LKSLADAREVEMAIEHIKWIQES 602
           L        +  A    + +Q +
Sbjct: 332 LDGFCKQGYLGKAFRLFRAMQST 354



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 79/167 (47%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           + N++++  C   R+   + V+ +  + GL P +  + +L+    +      A +L+D M
Sbjct: 12  TLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDM 71

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A GC  +  TY  +I+   ++GE   A  LF  M E G   +  TY++L+  LC+   +
Sbjct: 72  VARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRV 131

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             A ++F+     D+       ++ +  LC    +  A+ LL  ++S
Sbjct: 132 NEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTS 178



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +G S N  T NILI+ F ++  ++    +    ++ G+ P   T+T+L+ GL +      
Sbjct: 4   AGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQ 63

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLK 581
           A E+F+  V           +T +  LC+ G   +A  L + +       +  ++  L+ 
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIH 123

Query: 582 SLADAREVEMAIEHIKWI--QESSPTMLQEIS 611
           SL   R V  A++   ++  ++ SPT+    S
Sbjct: 124 SLCKYRRVNEALDIFSYMKAKDISPTIFTYTS 155


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 185/414 (44%), Gaps = 19/414 (4%)

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F C    P   N+++  L    Y D A K++  M   GV        + +  FC  A+  
Sbjct: 80  FACPPAAPAY-NAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH 138

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             L +L  +  R      G+V    ++ G        +A ++ D++      P+  A+  
Sbjct: 139 IALRLLRALPHR------GAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNK 192

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI--VS 324
           V       G V E  ++L K  + G++     Y  +I GL      CEA  L E +  V 
Sbjct: 193 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL------CEAGRLPEAVRLVD 246

Query: 325 G--KFTIDDDV-LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           G   + + D V  N LI G      P+ A+ +   M+ +G +P   T + +    CK + 
Sbjct: 247 GMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 306

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  E+ K      +  D  +Y  +++ LC  G +  A  +  E + KG+ PD+  YNS
Sbjct: 307 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 366

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++  C + L+  A ++ ++M   GC  +++TYNI+I+   ++G I  A  + ++ + KG
Sbjct: 367 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 426

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             PD  T+ +L++G C+   L +A ++  +   + +       ++ +  LC+ G
Sbjct: 427 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAG 480



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 202/480 (42%), Gaps = 10/480 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  ++  L    +T  A  +F+++      + P +   N +L  L   G +  A  +  +
Sbjct: 155 YCTVVCGLYAHGHTHDARQLFDQMLHT--HVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 212

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +  RG+  +   + ++I   CE  +L + + ++D +R      +   V    +I G CK 
Sbjct: 213 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA---VPDVVTYNTLIRGLCKK 269

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              +EA   L  +  + C PD   Y  + + +  +  V E   +LK     G  P    Y
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 329

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL  E  +  A EL     +     D  V N+L+ G         A+   N M E
Sbjct: 330 CSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE 389

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P + T + +   LCK     +   V        Y  D+ ++N ++   C   +L  
Sbjct: 390 EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS 449

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +++ M   G+ PD   YNS++   C+   +    + + +M   GC  N  TYNILI 
Sbjct: 450 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 509

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F    ++E A ++   M ++G+ PDA ++ +L+ G C+  +L+ A+ +F K        
Sbjct: 510 NFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSA 569

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHI 596
                +T + +   + +  +A K+   + S    +DS+   +L+        V+ A  H+
Sbjct: 570 TADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHL 629



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 188/465 (40%), Gaps = 63/465 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++++ L            L+++       D   Y  II    +    Q+A  +  +
Sbjct: 257 VTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKD 316

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
             F           SL+  L ++G ++ AL++F+E   +G++   + +            
Sbjct: 317 AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY------------ 364

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                          NS++ G  +  LI+H          A +V++E+    C PD   Y
Sbjct: 365 ---------------NSLVKGLCLQGLILH----------ALQVMNEMAEEGCHPDIQTY 399

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            IV      MG++ +  VV+      G  P    +   I G     ++  A +L E +  
Sbjct: 400 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 459

Query: 325 GKFTID----DDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
                D    + VLN L   G V+ ++       F  MI KG  P   T + L +N C+ 
Sbjct: 460 YGIAPDTITYNSVLNGLCKAGKVNEVNET-----FQEMILKGCHPNPITYNILIENFCRS 514

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           NK +E  +V   +S      D  S+N ++   C +G L  AY + Q+++ KG       +
Sbjct: 515 NKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTF 574

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+ A   +  +  A+K++D+M + G   +  TY +LI    +   ++ A      M++
Sbjct: 575 NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK 634

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           KG  P  +T+  ++  L               +VNH V  A  I+
Sbjct: 635 KGFIPSMSTFGRVINSL---------------TVNHRVFQAVGII 664



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 157/393 (39%), Gaps = 50/393 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+        +     +LK         D   Y  +I  L    + ++A  +FNE
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 351

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG------------------ 184
            +   + I P+I   NSL+  L   G I +AL++ +EM+  G                  
Sbjct: 352 AQ--AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKM 409

Query: 185 --VEFSTI---------------GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  +T+                F   I  +C+  KL   L +++  R  E  +   ++
Sbjct: 410 GNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVE--RMWEYGIAPDTI 467

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +++G CK  +V E  +   E+ ++ C P+ I Y I+ E F     + E   V+ K 
Sbjct: 468 TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 527

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDP 346
            + G+ P    +   I G      +  A  L + +    ++   D  N LIG+ S  ++ 
Sbjct: 528 SQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 587

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD----ELVEVYKVLSANDYFTDMES 402
             A   F+ M+ KG      T   L    CK    D     LVE+ K      +   M +
Sbjct: 588 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK----KGFIPSMST 643

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           +  +++ L  + R+ +A G+I  M + G+ P+V
Sbjct: 644 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 676



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 31/185 (16%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +GRLR+A    + M      P    YN++M+A         A K++ +M A+G S +L T
Sbjct: 64  AGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHT 123

Query: 473 YNILISKFSEV-------------------------------GEIEGALRLFHNMLEKGV 501
           + I +  F                                  G    A +LF  ML   V
Sbjct: 124 HTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHV 183

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P+   +  +L  LC+  ++  A  +  K +   + +     + ++  LC  G    A +
Sbjct: 184 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 243

Query: 562 LLRGL 566
           L+ G+
Sbjct: 244 LVDGM 248



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S+L  L  + ++N ++   +++ +     +   Y  +I +  +    ++A  V   
Sbjct: 467 ITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI-- 524

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           VK + E + P+    N+L+     +G ++ A  +F ++  +G   +   F   I  F   
Sbjct: 525 VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 584

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +     + DE+  + +     S    ++I G CK   V+ A+  L E+  +   P   
Sbjct: 585 LNMHMAEKIFDEMLSKGHRA--DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 642

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            +  V     +   VF+   ++    K+GV P   D
Sbjct: 643 TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 678


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 218/475 (45%), Gaps = 21/475 (4%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++ N     +SY++I+  L   +++     +L +++ +    +S  Y  ++  L +    
Sbjct: 2   KRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRV 61

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  +  E+K    ++   + ++L++   S G +D    +FDEM  +G+  + + +   
Sbjct: 62  EEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCL 121

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRI 254
           I  FC+     +  ++L  + +R    I   V     +I G CK  R  +A  + D +  
Sbjct: 122 INGFCKKGLWREATAVLHTMTERG---IQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178

Query: 255 RECKPDFIAYRIVAEEF---KLMGSVFE-REVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           +  +P  + Y ++         +G  F+  E +L+K ++L V      Y   I+GL    
Sbjct: 179 KGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVS----YNTLIMGLCNNG 234

Query: 311 RICEAKELGEVIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           ++ EA +L   ++     ++ DV+  N +I G         A+  ++ MIE+G    L T
Sbjct: 235 KLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFT 294

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              L     K    D+ +E++K +          +Y+VM+   C    L  A G+   MK
Sbjct: 295 CHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMK 354

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             GL P +  YN+LM + C+E  L  A++L+ +M  S C  +  ++NI+I    + G+I 
Sbjct: 355 ISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIH 414

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            A  L ++M + G+ PDA TY+S +  L +   ++ A   F      D M+A  I
Sbjct: 415 SAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAF------DSMIASGI 463



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 101/193 (52%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P + + + +   LCK  + ++ V++   +  +    +  +Y +++  LC  GR+ EA  
Sbjct: 7   LPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMR 66

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ EMKRKGL+ DV  Y++L+   C +  L   K L+D+M   G S N+  Y+ LI+ F 
Sbjct: 67  LLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G    A  + H M E+G+ PD  TYT ++ GLC++   + A ++F+         +  
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTV 186

Query: 542 ILSTFMISLCRRG 554
             +  +  LC+ G
Sbjct: 187 TYNVLINGLCKEG 199



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           MKR  + PD+  YN+++   C+E  L  A  L  +M  S C  N  TY IL+    + G 
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +E A+RL   M  KG+  D   Y++L+ G C +  L     +F++ +   +     + S 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 546 FMISLCRRGHFLVATKLL-----RGLSSDL 570
            +   C++G +  AT +L     RG+  D+
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDV 150


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/477 (21%), Positives = 223/477 (46%), Gaps = 15/477 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           ++ +++ L  + +        K V   K T D   +  ++ +L++    ++AF +F  + 
Sbjct: 68  HNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH 127

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            + + + P +    +++  L  DG +D A+++ D M+  G   + I + V +   C+  +
Sbjct: 128 TSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDFIA 263
             +  ++L E+ +R        ++   +++G CK +R++EA +++ +L IR  C P  + 
Sbjct: 187 TDKGFTLLQEMTRR--GFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYPTVVT 243

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + E F     V     +++   + G  P   +Y   I GL  + R+ +A+ L + +V
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 324 SGKFTIDDDVLNALIGSVSS---IDP----RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + +   D    + +I  +     +D      +A      M + G  P   T + + + LC
Sbjct: 304 AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  KS + + + + +  ++   D+ S+++++  LC S  L  AY +   M  +   P+  
Sbjct: 364 RARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPV 423

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y +L++   +   +  A ++++ M  S   G + TYN ++     VG IE A+R+   M
Sbjct: 424 AYAALIDGLSKGGEVDKAVRVFELMVESFRPG-VATYNSVLDGLCGVGRIEEAVRMVEGM 482

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           + K   PD  +Y +L+ GLC+ + ++ A+E+F         +   + +  +  LC++
Sbjct: 483 IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 42/349 (12%)

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           GQ + +  E R   N    GS     +IHG CK  ++++A+++LDE+R R          
Sbjct: 15  GQAVQLFREERCVPNEFTYGS-----LIHGLCKAGKLDQAYELLDEMRDR---------- 59

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
                                    G+ P    +   I GL    R  +A    + +   
Sbjct: 60  -------------------------GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGT 94

Query: 326 KFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDE 383
           K T D    N L+ + V S     A   F  M    + +P + T + +   LCK  K D 
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDR 154

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +E+  +++      ++ +Y+V+V  LC +GR  + + ++QEM R+G  PDV  YN+L+ 
Sbjct: 155 AIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLN 214

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+   L  A +L   M  SGC   + TYN L+  F    +++ A RL   M E+G  P
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           D   Y +++ GLC++  L  A  +  + V    +      ST +  LC+
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 167/414 (40%), Gaps = 46/414 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N  L +L   G    A+++F E      EF+   +G  I   C+  KL Q   +LDE+R 
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFT---YGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   +  G  +   +I G CK  R  +A      +   +C PD I + I+ +     G V
Sbjct: 59  R--GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 278 FEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
            E   + +         P    Y   I GL  + ++  A EL                  
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL------------------ 158

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                            + M E G  P + T S L + LCK  ++D+   + + ++   +
Sbjct: 159 ----------------LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  YN +++ LC S RL EA  ++Q M R G  P V  YNSLME  CR   +  A +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   M   GC  ++  YN +I+       ++ A  L   M+     PD  TY+++++GLC
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322

Query: 517 Q------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +      +  L+AA E+                +  +  LCR      A  LLR
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 213/499 (42%), Gaps = 21/499 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +     +A+ + +E++      G  + N ++  L   G   +AL  F  ++
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
                   I F + +    ++ ++ +   + + +      + N  V    +I+G CK  +
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPN-VVTYTTVINGLCKDGK 151

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           ++ A ++LD +    C P+ I Y ++ E     G   +   +L++  + G  P    Y  
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 302 FILGLIVERRICEAKELGEVIV-SGKF--TIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
            + GL   RR+ EA EL ++++ SG +   +  + L  L      +D   A      M E
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVD--RAFRLIQVMSE 269

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--- 415
           +G  P +   + +   LC+  + D+   + K + A     D+ +Y+ ++  LC   R   
Sbjct: 270 RGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDA 329

Query: 416 ---LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
              L  A  +++ MK+ G  P+   Y  ++E  CR    + A  L  +M  S    +L +
Sbjct: 330 DWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS 389

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA---FEVFN 529
           ++++I    +  +++ A ++F  M E+   P+   Y +L++GL +   +  A   FE+  
Sbjct: 390 FSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           +S    V    S+L      LC  G    A +++ G+       D  S+  L++ L    
Sbjct: 450 ESFRPGVATYNSVLD----GLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 588 EVEMAIEHIKWIQESSPTM 606
            VE A E  + ++     M
Sbjct: 506 CVEEAYELFQAVEAKGFAM 524



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 42/251 (16%), Positives = 108/251 (43%), Gaps = 13/251 (5%)

Query: 85  LSYHSILKSLSLSRQINA------IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           ++Y +I+  L    +++A         +L+ +K      ++  Y  +I  L + + +Q+A
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 139 FSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            ++   +  +  ++ P++ +   ++  L     +D A K+F  MS R  + + + +   I
Sbjct: 372 LALLRRMIDS--EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALI 429

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
               +  ++ + + + + + +   S   G      ++ G C   R+EEA ++++ +  +E
Sbjct: 430 DGLSKGGEVDKAVRVFELMVE---SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKE 486

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD  +Y  +      +  V E   + +     G A     Y   +  L  ++R+ +A 
Sbjct: 487 CFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546

Query: 317 ELGEVIVSGKF 327
            +   ++   +
Sbjct: 547 GVANKLIEAGY 557


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 173/389 (44%), Gaps = 6/389 (1%)

Query: 219 ENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           + +  NG  I +     I+    K K+++EA  +++++    C P    Y  +      M
Sbjct: 23  QETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKM 82

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G + E   +L+K    G  P    Y   I GL  ++R  EA +L + + S    +D    
Sbjct: 83  GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCY 142

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
            ALI G + +     A   +  M  +G VP + TLS +   LCK  +    V ++K + A
Sbjct: 143 TALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEA 202

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +   Y+ ++  LC + ++  A  ++ +MK+    PD   YN L++  C+   +  
Sbjct: 203 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAA 262

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+  +D+M  +GC  ++ TYNILIS F + G  + A  +F +M     +P+  TY +L+ 
Sbjct: 263 ARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLIS 322

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGH 572
           GLC+   L  A   +             + S+ +  LC+ G       L   +  S + +
Sbjct: 323 GLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVAN 382

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQE 601
           S +   L+  L  A  V+ A+     I++
Sbjct: 383 SQTRTRLIFHLCKANRVDEAVSLFNAIRK 411



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 164/405 (40%), Gaps = 37/405 (9%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L   G +  A  +  E +  G       +   +    +N K+ + +++++++    
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
            +    +  A+L  +G CK  R+EEA  +L ++    C PD + Y  + +        FE
Sbjct: 65  CTPTIATYNALL--NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFE 122

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              + K+    G+A  T  Y   I GL+   +I +A  + + + S     D   L+ +I 
Sbjct: 123 AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 182

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   +    +A+  F  M  +G  P     S L   LCK  K D  +E+   +       
Sbjct: 183 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +YN+++  LC SG +  A     EM   G  PDV  YN L+   C+      A  ++
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 302

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL------- 511
           D M +S CS N+ TY  LIS   +  ++  A   + +M E+G  PD+  Y+SL       
Sbjct: 303 DDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKS 362

Query: 512 ---------------------------LEGLCQETNLQAAFEVFN 529
                                      +  LC+   +  A  +FN
Sbjct: 363 GKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFN 407



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 9/349 (2%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T   ++Y S++  L   ++      + K++    + LD+  Y  +I  L+Q     +A S
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           V+  +    +   P++   ++++  L   G I  A+++F  M  RG+  + + +   I  
Sbjct: 161 VYKTM--TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 218

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+  K+   L ML +++K   +    ++   ++I G CK   V  A    DE+    CK
Sbjct: 219 LCKARKMDCALEMLAQMKKAFCT--PDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCK 276

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+   F   G+      V         +P    Y   I GL   R++ +A   
Sbjct: 277 PDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLY 336

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +       D  V ++L+ G   S       + F+ M E+  V    T + L  +LCK
Sbjct: 337 YQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCK 395

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
            N+ DE V ++  +   +      +YN ++S L  SG++ E   V QEM
Sbjct: 396 ANRVDEAVSLFNAIR-KEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           + N    D+ +Y  +V +L  + +++EA  +++++   G  P ++ YN+L+   C+   L
Sbjct: 26  TTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRL 85

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  L  ++  +GC+ ++ TY  LI    +      A +LF  M  +G+A D   YT+L
Sbjct: 86  EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTAL 145

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           + GL Q   +  A  V+    +   +     LST +  LC+ G    A ++ + + +  G
Sbjct: 146 IRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR-G 204

Query: 572 HSDSHVI---LLKSLADAREVEMAIEHIKWIQES 602
            + + V+   L+  L  AR+++ A+E +  ++++
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 238


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 218/482 (45%), Gaps = 52/482 (10%)

Query: 81  THSPLSYHSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSS---VYRFIIPSLIQGKNTQ 136
           +H+P S  S+ L   +++  + +I  V  ++ V +  L      +Y  +I +  + K   
Sbjct: 79  SHAPNSKPSLQLLKETINSGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGD 138

Query: 137 KAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            AF  F+ +K   + + P +  CN +L++       + A  ++ EM    ++ S + F +
Sbjct: 139 DAFECFDMMK--GKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNI 196

Query: 195 FIWKFCENAKLGQV---LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            I   C+  KL +    + +++ +  + N +   +     IIHG+C   RVE A  + D 
Sbjct: 197 MINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNT-----IIHGYCSRGRVEGARMIFDL 251

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++ R  KPD   Y          G + E   +L+K +++G+ P    Y   I G   +  
Sbjct: 252 MKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGN 311

Query: 312 I--------------------------------CEAKELGEVI--VSGKFTIDDDV-LNA 336
           +                                C+  E   +I  +S K  + D V  N 
Sbjct: 312 LEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNI 371

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G     + + A    + MI KG  PT  T ++L   L KR +  +  ++++ +    
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F D+  +N ++   C +G +  A+ +++EM +  + PD   +N+LM+  CRE  +  A+
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR 491

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L ++M + G   +  +YN LIS +S+ G+++ A R+   ML  G  P   TY +L++GL
Sbjct: 492 ELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGL 551

Query: 516 CQ 517
           C+
Sbjct: 552 CK 553



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 164/359 (45%), Gaps = 3/359 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++    S G ++ A  +FD M  RGV+  +  +G FI   C+  KL +   ML++++ 
Sbjct: 230 NTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMK- 288

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +   +V    +I G+C    +E AF   D++      P    Y ++     L   +
Sbjct: 289 -EIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKM 347

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E + ++K+  + G+ P +  Y   I G      + +A  L + ++S           +L
Sbjct: 348 DEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSL 407

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I  +S     + A   F  ++ KG  P L   + L    C     D    + K +     
Sbjct: 408 IYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKV 467

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  ++N ++   C  G++  A  +I+EMK +G+ PD   YN+L+    +   ++ A +
Sbjct: 468 VPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFR 527

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + D+M + G +  L TYN LI    +  E + A +L   M+ KG+ P+  TY SL+EG+
Sbjct: 528 VRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 5/229 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A  F   M   G  P + T + +    C R + +    ++ ++       D  +Y   
Sbjct: 208 KKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSF 267

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S +C  G+L EA G++++MK  GL P    YN+L++  C +  L  A    D+M   G 
Sbjct: 268 ISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGL 327

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + TYN+LI       +++ A  +   M EKG+ PD+ TY  L+ G C+  N++ AF 
Sbjct: 328 MPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFT 387

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
           + ++ ++  +   R   ++ +  L +RG    A  L      +G+  DL
Sbjct: 388 LHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDL 436



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 102/198 (51%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M  KG +P +   +++     K N++++   +Y  +      + + ++N+M++ LC 
Sbjct: 144 FDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCK 203

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G+L++A   I  M+  G+ P+V  YN+++   C    +  A+ ++D M   G   +  T
Sbjct: 204 EGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYT 263

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y   IS   + G++E A  +   M E G+ P A TY +L++G C + NL+ AF+  +K V
Sbjct: 264 YGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMV 323

Query: 533 NHDVMLARSILSTFMISL 550
              +M   S  +  + +L
Sbjct: 324 REGLMPTVSTYNMLIHAL 341



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L +  C+  + D+  E + ++        + + N M+S    S R  +A+ +  EM R  
Sbjct: 127 LIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMR 186

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +   V  +N ++   C+E  L+ AK+    M A G   N+ TYN +I  +   G +EGA 
Sbjct: 187 IKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGAR 246

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            +F  M  +GV PD+ TY S + G+C+E  L+ A  +  K     +       +T +   
Sbjct: 247 MIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY 306

Query: 551 CRRGHFLVA 559
           C +G+  +A
Sbjct: 307 CNKGNLEMA 315



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 143/303 (47%), Gaps = 17/303 (5%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAID 104
           + P  +T+++L  G+ N  + +  F +           +  +Y+ ++ +L L  +++  D
Sbjct: 292 LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEAD 351

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
            ++K++    +  DS  Y  +I    +  N +KAF++ +E+    + I P      SL+ 
Sbjct: 352 GIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMI--SKGIQPTRVTYTSLIY 409

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           VL+  G +  A  +F+++  +G+    I F   I   C N  + +  +ML E+ + +  +
Sbjct: 410 VLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK--V 467

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +   V    ++ G C+  +VE A ++++E++ R  KPD I+Y  +   +   G + +   
Sbjct: 468 VPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFR 527

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           V  +   +G  P    Y   I GL        A++L + ++S   T +D+   +LI  + 
Sbjct: 528 VRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587

Query: 343 SID 345
           +++
Sbjct: 588 NVE 590



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 88/196 (44%), Gaps = 4/196 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y++++   C   R  +A+     MK KG+ P V   N ++    + +    A  L+ +MF
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
                 ++ T+NI+I+   + G+++ A      M   G+ P+  TY +++ G C    ++
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---IL 579
            A  +F+      V        +F+  +C+ G    A+ +L  +  ++G   + V    L
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKM-KEIGLRPTAVTYNTL 302

Query: 580 LKSLADAREVEMAIEH 595
           +    +   +EMA ++
Sbjct: 303 IDGYCNKGNLEMAFDY 318


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 138/599 (23%), Positives = 254/599 (42%), Gaps = 41/599 (6%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPL---- 85
           W P LE  L  L LR SL P  V  V+   L T   +AL FF WA +Q  + H P+    
Sbjct: 178 WNPKLEGELRHL-LR-SLKPRQVCAVLQ--LQTDERVALRFFYWADRQWRYRHDPIRRPE 233

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++  ++ S S + ++     VL  ++   I  D S+    I  L+ G    KA      +
Sbjct: 234 AFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM 293

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +    +I P +   N L+        +++A+++  EM  +G     I +   +   C+  
Sbjct: 294 QI--VEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEK 351

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           ++ +V  +++++ K  N ++   V     +H   K    +EA + L E   R  + D + 
Sbjct: 352 RIKEVRLLMEKMLKDSN-LLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 410

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVI 322
           Y  +   F   G + + + ++ +    G  P    Y   I GL  ER++ +AK+ L ++ 
Sbjct: 411 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 470

Query: 323 VSG------KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             G       +T    +LN L  + +S++ R  +   N   E   +P   T S L     
Sbjct: 471 KHGCKPNTVSYTA---LLNGLCKNGNSLEAREMM---NMSEEDWWIPNAITYSVLMHGFR 524

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  KS E  ++ + +    +F      N+++  LC   ++ EA   +++    G   +V 
Sbjct: 525 REGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVV 584

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            + +++   C++D L  A  L D M+ S    ++ TY  +I    + G IE A +L   M
Sbjct: 585 NFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKM 644

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L  G+ P   TY +++   C+   ++   ++  K ++      R+  +  +  LC  G+ 
Sbjct: 645 LRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQE--CRTAYNQVIEKLCSFGNL 702

Query: 557 LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELF 615
             A KLL             V+   S  DA    M IE   ++ +  P M   ++  +F
Sbjct: 703 EQAYKLL-----------GKVLRTASKIDANTCHMLIE--SYLSKGIPLMSYNVACRMF 748



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 169/401 (42%), Gaps = 19/401 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+ + +L+  G+ D AL+   E   R      +G+   +  FC   ++ +   +++E+  
Sbjct: 377 NTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFS 436

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +    I   V    +I+G C+ ++V++A K+L ++    CKP+ ++Y  +       G+ 
Sbjct: 437 K--GCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNS 494

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +    P    Y   + G   E +  EA +L   ++   F      +N L
Sbjct: 495 LEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLL 554

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+   +    A  F    +  G    +   + +    C+++  +  + +   +  ++ 
Sbjct: 555 IQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNK 614

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLR 452
             D+ +Y  ++  L   GR+ EA  +  +M R GL P    Y +++   CR    EDLL 
Sbjct: 615 HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLL- 673

Query: 453 PAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
              KL ++M +   C      YN +I K    G +E A +L   +L      DA T   L
Sbjct: 674 ---KLLEKMLSRQECR---TAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 727

Query: 512 LEGLCQE----TNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           +E    +     +   A  +FN+++  D+ L   +    M+
Sbjct: 728 IESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLML 768



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 98/501 (19%), Positives = 208/501 (41%), Gaps = 61/501 (12%)

Query: 56  INPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           I P ++T++ L  G+ +           ++ P    SP  +SY++++  L   ++I  + 
Sbjct: 298 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVR 357

Query: 105 SVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV---KFNCEDIGPEICNSL 160
            ++ K +K + +  D   Y   +  L +  +  +A     E    +F  + +G    +++
Sbjct: 358 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG---YSAI 414

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     +G +D A ++ +EM  +G     + +   I   C+  K+ Q   ML ++ K  +
Sbjct: 415 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYK--H 472

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
                +V    +++G CK     EA ++++        P+ I Y ++   F+  G   E 
Sbjct: 473 GCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEA 532

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE---------------VIVSG 325
             ++++  K G  P   +    I  L  E ++ EAK   E                ++ G
Sbjct: 533 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 592

Query: 326 KFTIDD-----DVLNALIGSVSSIDPRSAIVFFNFMIEKGRV----------------PT 364
               DD      +L+ +  S    D  +     + + +KGR+                PT
Sbjct: 593 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPT 652

Query: 365 LSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
             T   +    C+  + ++L+++  K+LS  +  T   +YN ++  LC+ G L +AY ++
Sbjct: 653 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAYKLL 709

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            ++ R     D +  + L+E+   + +   +  +  +MF      +LK    +  K    
Sbjct: 710 GKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLE 769

Query: 484 GEIEGALRLFHNMLEKG-VAP 503
           G+ E A +L    +E+G ++P
Sbjct: 770 GKSEEADKLILRFVERGRISP 790


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/543 (23%), Positives = 233/543 (42%), Gaps = 12/543 (2%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P LE  L  L LR SL P  V  V+   L T   +AL FF WA +Q  + H P+ Y++
Sbjct: 84  WNPKLEGELRHL-LR-SLKPRQVCAVLQ--LQTDERVALRFFYWADRQWRYRHDPIVYYA 139

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL+ +   +I      + +++ S  +    + A      ++   
Sbjct: 140 MLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAG 199

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL     +D A++  + M    +  + I +   I  +C+  +L    
Sbjct: 200 IEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAX 259

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECK--PDFIAYRI 266
            ++ E+  +  S      I+   + GF CK KR++E  ++L E  +++    PD + Y  
Sbjct: 260 ELIAEMPFKGCS---PDKISYYTVMGFLCKEKRIKE-LRLLMEKMLKDSNLLPDQVTYNT 315

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
                   G   E    L++  +         Y   +     E R+ +AKE+   + S  
Sbjct: 316 FVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKG 375

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D     ++I G         A      M + G  P   + + L   LCK   S E  
Sbjct: 376 CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAR 435

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+  +     +  +  +Y+V++      G+  EA  +++EM +KG  P     N L+++ 
Sbjct: 436 EMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSL 495

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+E+ +  AK+  +Q   +GC+ N+  +  +I  F +  ++E AL L  +M      PD 
Sbjct: 496 CQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDV 555

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TYT++++ L ++  ++ A ++  K +    +       T +   CR G      KLL  
Sbjct: 556 VTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEK 615

Query: 566 LSS 568
           + S
Sbjct: 616 MLS 618



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/492 (20%), Positives = 188/492 (38%), Gaps = 84/492 (17%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLS 210
           P +  ++L +L+       A ++   M+ R +E     FG  +  +    KL    + L+
Sbjct: 134 PIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLT 193

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           M+ +     +  I  + I VL++     G R+++A + L+ ++I E  P+ I Y  + + 
Sbjct: 194 MMQKAGIEPDLSICNTAIHVLVM-----GNRLDKAVRFLERMQIVEIXPNVITYNCLIKG 248

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +  + +   ++ +    G +P    Y   +  L  E+RI E + L E     K   D
Sbjct: 249 YCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLME-----KMLKD 303

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
            ++L                            P   T +     L K    DE +E  + 
Sbjct: 304 SNLL----------------------------PDQVTYNTFVHMLSKHGHGDEALEFLRE 335

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                +  D   Y+ +V   C  GR+ +A  ++ EM  KG  PDV  Y S++   C+E  
Sbjct: 336 AEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERK 395

Query: 451 LRPAKKLWDQMFASGCSGNLK-----------------------------------TYNI 475
           +  AKK+  QM+  GC  N                                     TY++
Sbjct: 396 VDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSV 455

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+  F   G+   A  L   M++KG  P       L++ LCQE  +  A     + +N+ 
Sbjct: 456 LMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA------DAR 587
             +     +T +   C++     A  LL  +     H D  ++  ++ +L       +A 
Sbjct: 516 CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEAT 575

Query: 588 EVEMAIEHIKWI 599
           ++ M +  + WI
Sbjct: 576 KLAMKMLRVGWI 587



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 168/401 (41%), Gaps = 19/401 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+ + +L+  G+ D AL+   E   R      +G+   +  FC   ++ +   +++E+  
Sbjct: 314 NTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFS 373

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +    I   V    +I+G C+ ++V++A K+L ++    CKP+ ++Y  +       G+ 
Sbjct: 374 K--GCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNS 431

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +    P    Y   + G   E +  EA +L   ++   F      +N L
Sbjct: 432 LEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLL 491

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+   +    A  F    +  G    +   + +    C+++  +  + +   +  ++ 
Sbjct: 492 IQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNK 551

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLR 452
             D+ +Y  ++  L   GR+ EA  +  +M R G  P    Y +++   CR    EDLL 
Sbjct: 552 HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLL- 610

Query: 453 PAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
              KL ++M +   C      YN +I K    G +E A +L   +L      DA T   L
Sbjct: 611 ---KLLEKMLSRQECR---TAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 664

Query: 512 LEGLCQE----TNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           +E    +     +   A  +FN+++  D+ L   +    M+
Sbjct: 665 IESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLML 705



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/504 (19%), Positives = 208/504 (41%), Gaps = 67/504 (13%)

Query: 56  INPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           I P ++T++ L  G+ +           ++ P    SP  +SY++++  L   ++I  + 
Sbjct: 235 IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELR 294

Query: 105 SVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV---KFNCEDIGPEICNSL 160
            ++ K +K + +  D   Y   +  L +  +  +A     E    +F  + +G    +++
Sbjct: 295 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGY---SAI 351

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     +G +D A ++ +EM  +G     + +   I   C+  K+ Q   ML ++ K  +
Sbjct: 352 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYK--H 409

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
                +V    +++G CK     EA ++++        P+ I Y ++   F+  G   E 
Sbjct: 410 GCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEA 469

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE---------------VIVSG 325
             ++++  K G  P   +    I  L  E ++ EAK   E                ++ G
Sbjct: 470 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529

Query: 326 KFTIDDDVLNAL------------------------IGSVSSIDPRSAIVFFNFMIEKGR 361
            F   DD+  AL                        +G    I+  + +     M+  G 
Sbjct: 530 -FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMK--MLRVGW 586

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
           +PT  T   +    C+  + ++L+++  K+LS  +  T   +YN ++  LC+ G L +AY
Sbjct: 587 IPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAY 643

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ ++ R     D +  + L+E+   + +   +  +  +MF      +LK    +  K 
Sbjct: 644 KLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKL 703

Query: 481 SEVGEIEGALRLFHNMLEKG-VAP 503
              G+ E A +L    +E+G ++P
Sbjct: 704 MLEGKSEEADKLILRFVERGRISP 727


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 190/424 (44%), Gaps = 13/424 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFD 178
            Y  ++  L + +   KA  VF  +   C  + P++   N L+      G +  A+K + 
Sbjct: 229 TYNSVLKGLCKHRRFDKAKEVFRTMD-QCS-VAPDVRSFNILIGGFCRVGEVKEAVKFYK 286

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM HR V    + F   I  F    ++    + L E++     ++   VI  ++I GFC+
Sbjct: 287 EMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGL--GLVPDGVIYTMVIGGFCR 344

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
              + EA +V DE+    C PD + Y  +         + + E +L +  + GV P    
Sbjct: 345 AGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCT 404

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           +   I G   +     A +L + ++  +   D    N+LI G     D   A   ++ M 
Sbjct: 405 FTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMH 464

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            +  +P   T S L  + C++ + ++       +       ++ +YN ++   C SG ++
Sbjct: 465 AREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVK 524

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +    +Q+M++  + PD+  +N+L+    +E+ +  A  +++ M       +  TYN++I
Sbjct: 525 KGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMII 584

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           + FSE G ++ A R+F  M + G+ PD  TY SL+ G     N + AF++      HD M
Sbjct: 585 NGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQL------HDEM 638

Query: 538 LARS 541
           + R 
Sbjct: 639 IHRG 642



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 208/468 (44%), Gaps = 28/468 (5%)

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDG 168
           +VN  TL+  V+ +       G +T     V +E++  C  + P++   N L+      G
Sbjct: 154 EVNAYTLNIMVHSYCKTLEFDGADT-----VISEMEKRC--VFPDVVTHNVLIDARFRAG 206

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            +D A+ + D M++RG++   + +   +   C++ +  +   +    R  +   +   V 
Sbjct: 207 DVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVF---RTMDQCSVAPDVR 263

Query: 229 AV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +  ++I GFC+   V+EA K   E++ R   PD +++  +   F   G +      L++ 
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNALIGSVSS 343
           + LG+ P    Y   I G      + EA  + + +V      D    + +LN L      
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRL 383

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +D   A    N M E+G  P L T + L    C++   +  ++++  L       D+ +Y
Sbjct: 384 LD---AEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTY 440

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++  +C  G L +A  +  +M  + + P+   Y+ L+++ C +  +  A    D+M  
Sbjct: 441 NSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVK 500

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N++TYN +I  +   G ++   +    M +  V PD  T+ +L+ G  +E N+  
Sbjct: 501 KGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHG 560

Query: 524 AFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           AF VFN    + V  D +    I++ F      +G+   A ++ +G+ 
Sbjct: 561 AFNVFNIMEKEMVRPDAVTYNMIINGF----SEQGNMQDAGRVFKGMG 604



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 180/451 (39%), Gaps = 38/451 (8%)

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T    V+  +I +  Q +  ++AF  F  +  +   +     N+LLAVL+  G+   A +
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQE 143

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            +  +     E +     + +  +C+  +     +++ E+ KR   +    V   ++I  
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKR--CVFPDVVTHNVLIDA 201

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             +   V+ A  ++D +  R  KP  + Y  V +         + + V +   +  VAP 
Sbjct: 202 RFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPD 261

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
              +   I G      + EA +  + +     T D    + LIG  S   +   A  +  
Sbjct: 262 VRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLR 321

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M   G VP     + +    C+     E + V   +       D+ +YN +++ LC   
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQH 381

Query: 415 RLREAYGVIQEMKRKG-----------------------------------LDPDVSFYN 439
           RL +A  ++ EM+ +G                                   L PDV  YN
Sbjct: 382 RLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYN 441

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           SL++  CR+  L  A +LWD M A     N  TY+ILI    E G++E A      M++K
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKK 501

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           G  P+  TY S+++G C+  N++   +   K
Sbjct: 502 GNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK 532



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 4/256 (1%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D  +AI   + M  +G  P + T +++ K LCK  + D+  EV++ +       D+ S+N
Sbjct: 207 DVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFN 266

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +++   C  G ++EA    +EM+ + + PDV  ++ L+    R   +  A     +M   
Sbjct: 267 ILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGL 326

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +   Y ++I  F   G +  ALR+   M+  G  PD  TY +LL GLC++  L  A
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584
            ++ N+     V       +T +   CR+G+F  A +L   L       D  V+   SL 
Sbjct: 387 EKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD--VVTYNSLI 444

Query: 585 DA--REVEMAIEHIKW 598
           D   R+ ++A  +  W
Sbjct: 445 DGMCRKGDLAKANELW 460



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 150/367 (40%), Gaps = 11/367 (2%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q    T   +S+  ++   S   +++   + L+++K   +  D  +Y  +I    +  + 
Sbjct: 289 QHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 136 QKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            +A  V +E V F C    P++   N+LL  L     + +A K+ +EM  RGV      F
Sbjct: 349 SEALRVRDEMVGFGCL---PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTF 405

Query: 193 GVFIWKFCENAKLGQVLSMLDEV-RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
              I  +C        L + D + R+R    +   V    +I G C+   + +A ++ D+
Sbjct: 406 TTLIHGYCRQGNFENALQLFDTLLRQRLRPDV---VTYNSLIDGMCRKGDLAKANELWDD 462

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  RE  P+ I Y I+ +     G V +    L +  K G  P    Y   I G      
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + + ++  + +       D    N LI G +   +   A   FN M ++   P   T + 
Sbjct: 523 VKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNM 582

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +     ++    +   V+K +  +    D  +Y  +++   T+G  ++A+ +  EM  +G
Sbjct: 583 IINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642

Query: 431 LDPDVSF 437
             PD  F
Sbjct: 643 FAPDDKF 649



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 2/226 (0%)

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           R +     E+   L A+      + +++++     S + REA+   + +    +    S 
Sbjct: 65  RRRGASRREIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASA 124

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
            N+L+    R      A++ +  + +S    N  T NI++  + +  E +GA  +   M 
Sbjct: 125 SNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEME 184

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           ++ V PD  T+  L++   +  ++ AA  + +   N  +       ++ +  LC+   F 
Sbjct: 185 KRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFD 244

Query: 558 VATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQE 601
            A ++ R +       D  S  IL+       EV+ A++  K +Q 
Sbjct: 245 KAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQH 290


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 185/414 (44%), Gaps = 19/414 (4%)

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F C    P   N+++  L    Y D A K++  M   GV        + +  FC  A+  
Sbjct: 79  FACPPAAPAY-NAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH 137

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             L +L  +  R      G+V    ++ G        +A ++ D++      P+  A+  
Sbjct: 138 IALRLLRALPHR------GAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNK 191

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI--VS 324
           V       G V E  ++L K  + G++     Y  +I GL      CEA  L E +  V 
Sbjct: 192 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL------CEAGRLPEAVRLVD 245

Query: 325 G--KFTIDDDV-LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           G   + + D V  N LI G      P+ A+ +   M+ +G +P   T + +    CK + 
Sbjct: 246 GMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 305

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  E+ K      +  D  +Y  +++ LC  G +  A  +  E + KG+ PD+  YNS
Sbjct: 306 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 365

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++  C + L+  A ++ ++M   GC  +++TYNI+I+   ++G I  A  + ++ + KG
Sbjct: 366 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 425

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             PD  T+ +L++G C+   L +A ++  +   + +       ++ +  LC+ G
Sbjct: 426 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAG 479



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 202/480 (42%), Gaps = 10/480 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  ++  L    +T  A  +F+++      + P +   N +L  L   G +  A  +  +
Sbjct: 154 YCTVVCGLYAHGHTHDARQLFDQMLHT--HVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 211

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +  RG+  +   + ++I   CE  +L + + ++D +R      +   V    +I G CK 
Sbjct: 212 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA---VPDVVTYNTLIRGLCKK 268

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              +EA   L  +  + C PD   Y  + + +  +  V E   +LK     G  P    Y
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 328

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL  E  +  A EL     +     D  V N+L+ G         A+   N M E
Sbjct: 329 CSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE 388

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P + T + +   LCK     +   V        Y  D+ ++N ++   C   +L  
Sbjct: 389 EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS 448

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +++ M   G+ PD   YNS++   C+   +    + + +M   GC  N  TYNILI 
Sbjct: 449 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 508

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F    ++E A ++   M ++G+ PDA ++ +L+ G C+  +L+ A+ +F K        
Sbjct: 509 NFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSA 568

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHI 596
                +T + +   + +  +A K+   + S    +DS+   +L+        V+ A  H+
Sbjct: 569 TADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHL 628



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 188/465 (40%), Gaps = 63/465 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++++ L            L+++       D   Y  II    +    Q+A  +  +
Sbjct: 256 VTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKD 315

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
             F           SL+  L ++G ++ AL++F+E   +G++   + +            
Sbjct: 316 AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY------------ 363

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                          NS++ G  +  LI+H          A +V++E+    C PD   Y
Sbjct: 364 ---------------NSLVKGLCLQGLILH----------ALQVMNEMAEEGCHPDIQTY 398

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            IV      MG++ +  VV+      G  P    +   I G     ++  A +L E +  
Sbjct: 399 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 458

Query: 325 GKFTID----DDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
                D    + VLN L   G V+ ++       F  MI KG  P   T + L +N C+ 
Sbjct: 459 YGIAPDTITYNSVLNGLCKAGKVNEVNET-----FQEMILKGCHPNPITYNILIENFCRS 513

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           NK +E  +V   +S      D  S+N ++   C +G L  AY + Q+++ KG       +
Sbjct: 514 NKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTF 573

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+ A   +  +  A+K++D+M + G   +  TY +LI    +   ++ A      M++
Sbjct: 574 NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK 633

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           KG  P  +T+  ++  L               +VNH V  A  I+
Sbjct: 634 KGFIPSMSTFGRVINSL---------------TVNHRVFQAVGII 663



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 157/393 (39%), Gaps = 50/393 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+        +     +LK         D   Y  +I  L    + ++A  +FNE
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 350

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG------------------ 184
            +   + I P+I   NSL+  L   G I +AL++ +EM+  G                  
Sbjct: 351 AQ--AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKM 408

Query: 185 --VEFSTI---------------GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  +T+                F   I  +C+  KL   L +++  R  E  +   ++
Sbjct: 409 GNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVE--RMWEYGIAPDTI 466

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +++G CK  +V E  +   E+ ++ C P+ I Y I+ E F     + E   V+ K 
Sbjct: 467 TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 526

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDP 346
            + G+ P    +   I G      +  A  L + +    ++   D  N LIG+ S  ++ 
Sbjct: 527 SQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 586

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD----ELVEVYKVLSANDYFTDMES 402
             A   F+ M+ KG      T   L    CK    D     LVE+ K      +   M +
Sbjct: 587 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK----KGFIPSMST 642

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           +  +++ L  + R+ +A G+I  M + G+ P+V
Sbjct: 643 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 675



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 31/185 (16%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +GRLR+A    + M      P    YN++M+A         A K++ +M A+G S +L T
Sbjct: 63  AGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHT 122

Query: 473 YNILISKFSEV-------------------------------GEIEGALRLFHNMLEKGV 501
           + I +  F                                  G    A +LF  ML   V
Sbjct: 123 HTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHV 182

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P+   +  +L  LC+  ++  A  +  K +   + +     + ++  LC  G    A +
Sbjct: 183 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 242

Query: 562 LLRGL 566
           L+ G+
Sbjct: 243 LVDGM 247



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S+L  L  + ++N ++   +++ +     +   Y  +I +  +    ++A  V   
Sbjct: 466 ITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI-- 523

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           VK + E + P+    N+L+     +G ++ A  +F ++  +G   +   F   I  F   
Sbjct: 524 VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 583

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +     + DE+  + +     S    ++I G CK   V+ A+  L E+  +   P   
Sbjct: 584 LNMHMAEKIFDEMLSKGHRA--DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 641

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            +  V     +   VF+   ++    K+GV P   D
Sbjct: 642 TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 677


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 185/414 (44%), Gaps = 19/414 (4%)

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F C    P   N+++  L    Y D A K++  M   GV        + +  FC  A+  
Sbjct: 82  FACPPAAPAY-NAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH 140

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             L +L  +  R      G+V    ++ G        +A ++ D++      P+  A+  
Sbjct: 141 IALRLLRALPHR------GAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNK 194

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI--VS 324
           V       G V E  ++L K  + G++     Y  +I GL      CEA  L E +  V 
Sbjct: 195 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL------CEAGRLPEAVRLVD 248

Query: 325 G--KFTIDDDV-LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           G   + + D V  N LI G      P+ A+ +   M+ +G +P   T + +    CK + 
Sbjct: 249 GMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 308

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  E+ K      +  D  +Y  +++ LC  G +  A  +  E + KG+ PD+  YNS
Sbjct: 309 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 368

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++  C + L+  A ++ ++M   GC  +++TYNI+I+   ++G I  A  + ++ + KG
Sbjct: 369 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 428

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             PD  T+ +L++G C+   L +A ++  +   + +       ++ +  LC+ G
Sbjct: 429 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAG 482



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 8/412 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  ++  L    +T  A  +F+++      + P +   N +L  L   G +  A  +  +
Sbjct: 157 YCTVVCGLYAHGHTHDARQLFDQMLHT--HVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 214

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +  RG+  +   + ++I   CE  +L + + ++D +R      +   V    +I G CK 
Sbjct: 215 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA---VPDVVTYNTLIRGLCKK 271

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              +EA   L  +  + C PD   Y  + + +  +  V E   +LK     G  P    Y
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 331

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL  E  +  A EL     +     D  V N+L+ G         A+   N M E
Sbjct: 332 CSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE 391

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P + T + +   LCK     +   V        Y  D+ ++N ++   C   +L  
Sbjct: 392 EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS 451

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +++ M   G+ PD   YNS++   C+   +    + + +M   GC  N  TYNILI 
Sbjct: 452 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 511

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            F    ++E A ++   M ++G+ PDA ++ +L+ G C+  +L+ A+ +F K
Sbjct: 512 NFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 563



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 188/465 (40%), Gaps = 63/465 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++++ L            L+++       D   Y  II    +    Q+A  +  +
Sbjct: 259 VTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKD 318

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
             F           SL+  L ++G ++ AL++F+E   +G++   + +            
Sbjct: 319 AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY------------ 366

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                          NS++ G  +  LI+H          A +V++E+    C PD   Y
Sbjct: 367 ---------------NSLVKGLCLQGLILH----------ALQVMNEMAEEGCHPDIQTY 401

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            IV      MG++ +  VV+      G  P    +   I G     ++  A +L E +  
Sbjct: 402 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 461

Query: 325 GKFTID----DDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
                D    + VLN L   G V+ ++       F  MI KG  P   T + L +N C+ 
Sbjct: 462 YGIAPDTITYNSVLNGLCKAGKVNEVNET-----FQEMILKGCHPNPITYNILIENFCRS 516

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           NK +E  +V   +S      D  S+N ++   C +G L  AY + Q+++ KG       +
Sbjct: 517 NKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTF 576

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+ A   +  +  A+K++D+M + G   +  TY +LI    +   ++ A      M++
Sbjct: 577 NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK 636

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           KG  P  +T+  ++  L               +VNH V  A  I+
Sbjct: 637 KGFIPSMSTFGRVINSL---------------TVNHRVFQAVGII 666



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 156/391 (39%), Gaps = 46/391 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++I+        +     +LK         D   Y  +I  L    + ++A  +FNE
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 353

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +   + I P+I   NSL+  L   G I +AL++ +EM+  G       + + I   C+ 
Sbjct: 354 AQ--AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKM 411

Query: 203 AKLGQVLSMLDEVRKRE--------NSMING-------------------------SVIA 229
             +     ++++   +         N++I+G                         ++  
Sbjct: 412 GNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 471

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +++G CK  +V E  +   E+ ++ C P+ I Y I+ E F     + E   V+ K  +
Sbjct: 472 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 531

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRS 348
            G+ P    +   I G      +  A  L + +    ++   D  N LIG+ S  ++   
Sbjct: 532 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM 591

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD----ELVEVYKVLSANDYFTDMESYN 404
           A   F+ M+ KG      T   L    CK    D     LVE+ K      +   M ++ 
Sbjct: 592 AEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK----KGFIPSMSTFG 647

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            +++ L  + R+ +A G+I  M + G+ P+V
Sbjct: 648 RVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 678



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 31/187 (16%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +GRLR+A    + M      P    YN++M+A         A K++ +M A+G S +L T
Sbjct: 66  AGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHT 125

Query: 473 YNILISKFSEV-------------------------------GEIEGALRLFHNMLEKGV 501
           + I +  F                                  G    A +LF  ML   V
Sbjct: 126 HTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHV 185

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P+   +  +L  LC+  ++  A  +  K +   + +     + ++  LC  G    A +
Sbjct: 186 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 245

Query: 562 LLRGLSS 568
           L+ G+ +
Sbjct: 246 LVDGMRA 252



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S+L  L  + ++N ++   +++ +     +   Y  +I +  +    ++A  V   
Sbjct: 469 ITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI-- 526

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           VK + E + P+    N+L+     +G ++ A  +F ++  +G   +   F   I  F   
Sbjct: 527 VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 586

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             +     + DE+  + +     S    ++I G CK   V+ A+  L E+  +   P   
Sbjct: 587 LNMHMAEKIFDEMLSKGHRA--DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 644

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            +  V     +   VF+   ++    K+GV P   D
Sbjct: 645 TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 680


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 203/487 (41%), Gaps = 42/487 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A     G++D A ++   M    V      +   I   C+  ++   LS+LD++ +
Sbjct: 115 NTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR 171

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R        V   +++   C+    E+A  VLDE+R + C P+ + Y ++       G V
Sbjct: 172 R--GCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 229

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L +    G  P T  Y   + GL   +R  + +EL                   
Sbjct: 230 DDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEEL------------------- 270

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                          F  M+EK  +P   T   L +  C+    +  ++V + ++ +   
Sbjct: 271 ---------------FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCA 315

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           T+    N++++ +C  GR+ +A+ ++ +M   G +PD   Y ++++  CR +    AK+L
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            ++M  + C  N  T+N  I    + G IE A+ L   M E G      TY +L+ G C 
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCV 435

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-RGHFLVATKLLRGLSSDLGHSDSH 576
           + ++ +A E+F         +  + L T + +  R  G   +  ++LRG      +  + 
Sbjct: 436 QGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPP--NVVTF 493

Query: 577 VILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
            +L+        +E AIE ++ + E   T        L   ++     E  L LLH L  
Sbjct: 494 NVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVS 553

Query: 637 KCLDSEI 643
           K +  ++
Sbjct: 554 KGVSPDV 560



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 220/497 (44%), Gaps = 18/497 (3%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y  +L+++  +       +VL +++    T +   Y  II  + +     
Sbjct: 175 QPNV----VTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 230

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A  + N  +       P+  +  +LL  L +    D+  ++F EM  +    + + F +
Sbjct: 231 DARELLN--RLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDM 288

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  FC    + + + +L+++   E+     + +  ++I+  CK  RV++AFK+L+++  
Sbjct: 289 LIRFFCRGGMVERAIQVLEQMT--EHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGS 346

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
             C PD I+Y  V +         + + +L +  +    P    +  FI  L  +  I +
Sbjct: 347 YGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQ 406

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
           A  L E +     T+     NAL+        ID  SA+  F  M  K   P   T + L
Sbjct: 407 AIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHID--SALELFRSMPCK---PNTITYTTL 461

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LC   + D   E+   +   D   ++ ++NV+VSF C  G L EA  ++++M   G 
Sbjct: 462 LTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGC 521

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P++  YN+L++   ++     A +L   + + G S ++ T++ +I   S+   IE A++
Sbjct: 522 TPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           LFH + + G+ P A  Y  +L GLC+   +  A + F   V++  M   S     +  L 
Sbjct: 582 LFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641

Query: 552 RRGHFLVATKLLRGLSS 568
             G    A  LL  L S
Sbjct: 642 HEGLLKEAQDLLSVLCS 658



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 146/337 (43%), Gaps = 4/337 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C+  R  +A +VL          D  AY  +   +   G +   +   +    + 
Sbjct: 82  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHL---DAARRLIGSMP 138

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAI 350
           VAP    Y   I  L    R+ +A  L + ++      +      L+ ++        A+
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + M  KG  P + T + +   +C+  + D+  E+   L +  +  D  SY  ++  L
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C S R  +   +  EM  K   P+   ++ L+   CR  ++  A ++ +QM   GC+ N 
Sbjct: 259 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNT 318

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              NI+I+   + G ++ A +L ++M   G  PD  +YT++L+GLC+      A E+ N+
Sbjct: 319 TLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNE 378

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            V ++        +TF+  LC++G    A  L+  +S
Sbjct: 379 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 230/500 (46%), Gaps = 15/500 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++ ++++ + SR+ + I  VL ++K     L  +++  I  +  +     +A + F+ +
Sbjct: 91  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 150

Query: 146 --KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM---SHRGVEFSTIGFGVFIWKFC 200
               +C+       NS+L V+  +G    A K +  +   + +G + + + + + I   C
Sbjct: 151 ANDLHCKQTVKSF-NSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 209

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              KLGQ+   +D  R+      N  V     +++G CK +RV+EA  +LDE++   C P
Sbjct: 210 ---KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLP 266

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + + ++ +     G +     ++      G  P    Y   I GL ++ ++ +A  L 
Sbjct: 267 NPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 326

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E +VS K   +      +I G V        +     M E+G+       S+L   L K 
Sbjct: 327 EKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKE 386

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            KS+  V ++K ++      ++  Y   +  LC   +  EA  ++QEM  KG  P+   Y
Sbjct: 387 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTY 446

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           +SLM+   ++   + A  +W +M +     N+   ++L++   E G +  AL ++ +ML 
Sbjct: 447 SSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLG 506

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI---SLCRRGH 555
           +G+ PD   Y+S+++GLC   ++    ++F +    +   +R  + T+ I   +LCR+ +
Sbjct: 507 EGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPK-SRPDVVTYNILFNALCRQDN 565

Query: 556 FLVATKLLRGLSSDLGHSDS 575
              A  LL  +  +    DS
Sbjct: 566 LTRAIDLLNSMLDEGCDPDS 585



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 207/476 (43%), Gaps = 34/476 (7%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L+Y+ I+K+L    QI+      +++ +     D   Y  ++  L + +   
Sbjct: 195 QPNL----LTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 250

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +A  + +E++       P   N L+  L+ +G +  A K+ D M  +G   + + +   I
Sbjct: 251 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C   KL + LS+L+++    +  +   V    II+G  K +R E+   +L  +  R 
Sbjct: 311 HGLCLKGKLDKALSLLEKMV--SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 257 CKP-DFIAYRIVAEEFKLMGSVFEREVVL-KKKRKLGVAPRTNDYREFILGLIVERRICE 314
            K  ++I   +++  FK   S  E  V L K+  + G  P    Y  FI GL  + +  E
Sbjct: 369 QKANEYIYSSLISGLFKEGKS--ENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE 426

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A+++ + ++S  F  +    ++L+ G     D + AI+ +  M+ +     +   S L  
Sbjct: 427 AEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 486

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK--RKGL 431
            LC+  +  E + V+  +       D+ +Y+ M+  LC  G + +   +  EM+      
Sbjct: 487 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKS 546

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE--------- 482
            PDV  YN L  A CR+D L  A  L + M   GC  +  T NI +    E         
Sbjct: 547 RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGR 606

Query: 483 --VGEIE----------GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             + E+            ALR+   ML + + P+ +T++ +++  C+   ++   +
Sbjct: 607 LFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 662


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 128/614 (20%), Positives = 256/614 (41%), Gaps = 18/614 (2%)

Query: 11  TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           T  S  II    R     +W+  +E  L   GL   L P +V +V+    L    +A+ F
Sbjct: 59  TETSCVIIG---RALECGRWSESVELELE--GLHVELDPFVVNKVLRG--LLDSGMAVRF 111

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           + WA  +P F H+  +   I+  L +      +   L +V+   +    S+YR ++    
Sbjct: 112 YWWAESRPGFYHNNFAIAYIISLLFVDDNFALLSEFLGRVRSQGVAFHRSLYRVLLAGYA 171

Query: 131 QGKNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           +          F+E V   C + G +  N  + V+  +   D   K ++    +G   + 
Sbjct: 172 RAGKFDSVIETFDEMVTSGCREFGVDY-NRFIGVMIKNCCFDLVEKYYNMALAKGFCLTP 230

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
             +  +I   C++ ++  V  +L ++ K             + +H  C   R+ +A +++
Sbjct: 231 FTYSRWITALCQSNRIELVEELLTDMDKF--GCFPDFWACNIYVHYLCGHNRLYDALQMV 288

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           +++ ++   PD + Y  V           E   + ++  + G+ P        I GL   
Sbjct: 289 EKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKN 348

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLS 366
           +++ EA EL   +++    ++  + NALI       SI+     V  +FM   G  P + 
Sbjct: 349 QKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTV--SFMQRNGCEPDVV 406

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L  + C    +D+   + + +  +    D  SYN+++  LC + +L +A+  + + 
Sbjct: 407 TYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDH 466

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              G   D+   N L++A CR   +  A  L+ +M   G   +  TY ILI+    +G  
Sbjct: 467 MEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYS 526

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
             A  LF  ML   + P+   Y  +L  LC+  + + A ++F +    +V       +T 
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQESSP 604
           +  L +    + A  L + + +     D+     ++  L D  +  +A E  +++ E+  
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGI 646

Query: 605 TMLQEISAELFASL 618
            + +++S  L + L
Sbjct: 647 ILDRDVSERLISVL 660


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 144/669 (21%), Positives = 263/669 (39%), Gaps = 73/669 (10%)

Query: 9   LATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHS--- 65
           L T+    I S S       +   L+  + H        SP  +   ++P  LTH     
Sbjct: 22  LRTKTLTHITSPSCVQSTVTRVCSLVYDSYHHHYNHARFSPPTLHLDVDPNSLTHDQAVT 81

Query: 66  ------------LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
                       +AL FFNWA     F H    Y +   SL  ++       V++     
Sbjct: 82  IVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQ----- 136

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
                      ++ S  +    ++A  +  E+         +  N ++ ++   G ++ A
Sbjct: 137 ----------CMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYA 186

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL-------SMLDEVRKRENSMIN-- 224
             +FDEM  RGV+ + + + V +  +C   KLG VL        M++     +N+ ++  
Sbjct: 187 ENLFDEMCARGVQPNCVSYRVMVVGYC---KLGNVLESDRWLGGMIERGFVVDNATLSLI 243

Query: 225 -------GSVIAVL--------------------IIHGFCKGKRVEEAFKVLDELRIREC 257
                  G V   L                    +I G CK   V++AF++L+E+  R  
Sbjct: 244 VREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGW 303

Query: 258 KPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           KP+   +  + +     G   +   + LK  R     P    Y   I G   + ++  A+
Sbjct: 304 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAE 363

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L   +       + +    LI G   + +   A    N M E+G  P + T + +   L
Sbjct: 364 MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGL 423

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK+ +  E  +V K    N    D  +Y +++S  C    +++A  +  +M + G+ PD+
Sbjct: 424 CKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDI 483

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y +L+   CRE  ++ ++  +++    G     KTY  +I  +   G +  AL+ FH 
Sbjct: 484 HSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHR 543

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M + G A D+ TY +L+ GLC+++ L  A  +++  +   +        T     C+   
Sbjct: 544 MSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDD 603

Query: 556 FLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ-EISAEL 614
              A  +L  L   L     +  L++ L   R+V MA      + +  P + +  I+A +
Sbjct: 604 GCSAMVVLERLEKKLWVRTVNT-LVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFM 662

Query: 615 FASLSSSSY 623
            A   S+ Y
Sbjct: 663 TACYESNKY 671


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 209/454 (46%), Gaps = 25/454 (5%)

Query: 157 CNSLL-AVLASDGYIDNALKMFDEM-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           CN +L AV    G +D AL++  ++ +  G +   + +   +   C   + G+V  +++E
Sbjct: 191 CNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEE 250

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +  R     N      LI +  C+    E   +VL ++    C PD   Y  V +     
Sbjct: 251 M-VRVGCPPNVVTFNTLIGY-LCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKE 308

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +     +L +    G+ P    Y   + GL    R  +A+EL   +      +DD   
Sbjct: 309 GHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTF 368

Query: 335 NALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           N L+      G V  +     I     M+E G VP + T + +    CK    DE V + 
Sbjct: 369 NILVDFFCQNGLVYRV-----IELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLL 423

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           K ++A     +  SY +++  LC++ R  +A  ++ +M  +G  P+   +N+++   C++
Sbjct: 424 KSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKK 483

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            L+  A +L  QM  +GCS +L +Y+ +I    + G+ + AL L + M+ KG++P+   Y
Sbjct: 484 GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543

Query: 509 TSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +S+   L +E  +    ++F+     ++  D +L  +++S    SLC+RG    A + L 
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVIS----SLCKRGGTDRAIEFLA 599

Query: 565 GLSSD--LGHSDSHVILLKSLADAREVEMAIEHI 596
            + S   + +  ++ IL++ LA    V+ A E +
Sbjct: 600 YMVSSGCMPNESTYTILIRGLASEGFVKEAQEML 633



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 192/449 (42%), Gaps = 42/449 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+++LK L ++++   +  +++++       +   +  +I  L +    ++   V  +
Sbjct: 226 VSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQ 285

Query: 145 -VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            V   C    P+I    ++L  +  +G+++ A ++ D M   G++ + + +   +   C 
Sbjct: 286 MVDHGCT---PDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS 342

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             +  Q   +L E+   +N      V   +++  FC+   V    ++L+++    C PD 
Sbjct: 343 AERWEQAEELLAEMF--DNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDV 400

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  V   F   G + E  ++LK     G  P T  Y   + GL    R  +A++L   
Sbjct: 401 ITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDL--- 457

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                                           + MIE+G  P   T + +   LCK+   
Sbjct: 458 -------------------------------MSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+   Y+S+
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 546

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
             A  +E  +    +++D +       +   YN +IS   + G  + A+     M+  G 
Sbjct: 547 ASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGC 606

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNK 530
            P+ +TYT L+ GL  E  ++ A E+  +
Sbjct: 607 MPNESTYTILIRGLASEGFVKEAQEMLTE 635



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 153/378 (40%), Gaps = 57/378 (15%)

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK---GKRVEEAFKVLDEL 252
           +   C   ++   LS+LDE+R+R  + I    +  +I+   C    G     A +VL +L
Sbjct: 122 VRALCARGRIADALSVLDEMRRRGCAPI--PPMYHVILEAACSRGGGGGFRSAVRVLQDL 179

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFILGLIVER 310
             R C  D     +V       G   +  + L +      G  P    Y   + GL    
Sbjct: 180 HGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGL---- 235

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             C AK  G V          D++                     M+  G  P + T + 
Sbjct: 236 --CMAKRWGRV---------QDLMEE-------------------MVRVGCPPNVVTFNT 265

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LC+    + + +V   +  +    D+  Y  ++  +C  G L  A+ ++  M   G
Sbjct: 266 LIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYG 325

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P+V  YN++++  C  +    A++L  +MF + C  +  T+NIL+  F + G +   +
Sbjct: 326 LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVI 385

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L   MLE G  PD  TYT+++ G C+E  +  A           VML +S     M + 
Sbjct: 386 ELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEA-----------VMLLKS-----MAAC 429

Query: 551 CRRGHFLVATKLLRGLSS 568
             R + +  T +L+GL S
Sbjct: 430 GCRPNTISYTIVLKGLCS 447



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLW 458
           +Y  +V  LC  GR+ +A  V+ EM+R+G  P    Y+ ++EA C        R A ++ 
Sbjct: 117 TYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVL 176

Query: 459 DQMFASGCSGNLKTYNILISKFSEV-GEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
             +   GC+ ++   N++++   +  G ++ ALRL  ++    G  PD  +Y ++L+GLC
Sbjct: 177 QDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLC 236

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-----HFLVATKLLRGLSSDL 570
                    ++  + V           +T +  LCR G     H ++A  +  G + D+
Sbjct: 237 MAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDI 295


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 212/489 (43%), Gaps = 11/489 (2%)

Query: 87  YHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +  +LK L  +++++ A D +L+++     T D   Y  ++      K  ++A  + + +
Sbjct: 131 FSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMM 190

Query: 146 KFNCEDIGPEICNSLLAVLASDG-----YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
             + +  G    N +      DG      +D A  +F  M  +GV  +   +   I  + 
Sbjct: 191 ADDGD--GSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYL 248

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              K  +V+ ML E+    + +     I  +++   CK  R  EA  + D +  +  KP+
Sbjct: 249 SIGKWKEVVQMLQEMST--HGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPN 306

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              Y I+   +   GS+ E    L      GV+P  + +         +  I EA  + +
Sbjct: 307 VTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFD 366

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            +   + + +     ALI ++  +     A++ FN MI++G  P +   S+L   LC  +
Sbjct: 367 KMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVD 426

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++  E++  +       D   +N ++  LC  GR+ EA  +I  M R G+ PDV  YN
Sbjct: 427 KWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYN 486

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L++  C    +  A KL D + + G   +  TYN L+  + +   I+ A  LF  ML K
Sbjct: 487 TLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMK 546

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G+ PD  TY ++L GL Q      A E++   +N    +     +  +  LC+      A
Sbjct: 547 GLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEA 606

Query: 560 TKLLRGLSS 568
            K+   L S
Sbjct: 607 FKMFHSLCS 615



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 165/382 (43%), Gaps = 8/382 (2%)

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           S+  + + I  FC   +L    +    + K     +N +VI   ++ G C  KRV+EA  
Sbjct: 91  SSFTYTILIGCFCRMGRLKHGFAAFGLILK-TGWRVNDTVIFSQLLKGLCDAKRVDEATD 149

Query: 248 VLDELRIRE--CKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           +L   R+ E  C PD  +Y I+ + F   K      E   ++         P    Y   
Sbjct: 150 ILLR-RMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTV 208

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGR 361
           I GL   + +  AK + + ++      ++     LI    SI     +V     M   G 
Sbjct: 209 IDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGL 268

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P     + L   LCK  +  E   ++  +       ++  Y +++    T G L E + 
Sbjct: 269 QPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS 328

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
            +  M   G+ PD   +N +  A  ++ ++  A  ++D+M     S N+ TY  LI    
Sbjct: 329 FLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALC 388

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           ++G ++ A+  F+ M+++G+ PD   ++SL+ GLC     + A E+F + ++  + L   
Sbjct: 389 KLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTV 448

Query: 542 ILSTFMISLCRRGHFLVATKLL 563
             +T M +LCR G  + A +L+
Sbjct: 449 FFNTLMCNLCREGRVMEAQRLI 470



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/466 (19%), Positives = 204/466 (43%), Gaps = 7/466 (1%)

Query: 67  ALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           AL   +  +   + +H+P  ++Y +++  L  ++ ++    V + +    +  ++  Y  
Sbjct: 183 ALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTC 242

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +I   +     ++   +  E+  +       I   LL  L  +G    A  +FD +  +G
Sbjct: 243 LIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKG 302

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           ++ +   +G+ +  +     L ++ S LD +    N +     I  ++   + K   ++E
Sbjct: 303 IKPNVTIYGILLHGYATEGSLSEMHSFLDLMVG--NGVSPDHHIFNIMFCAYAKKAMIDE 360

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  + D++R +   P+ + Y  + +    +G V +  +   +    G+ P    +   + 
Sbjct: 361 AMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVY 420

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRV 362
           GL    +  +A+EL   ++     +D    N L+ ++   + R   A    + M+  G  
Sbjct: 421 GLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCR-EGRVMEAQRLIDLMLRVGVR 479

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + + + L    C   + DE  ++  V+ +     D  +YN ++   C + R+ +AY +
Sbjct: 480 PDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSL 539

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM  KGL PDV  YN+++    +      AK+L+  M  S    N+ TYNI+I+   +
Sbjct: 540 FREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCK 599

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
              ++ A ++FH++  K +  D  T   ++  L +    + A ++F
Sbjct: 600 NNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLF 645



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 200/462 (43%), Gaps = 18/462 (3%)

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           N  DSV+++     I  + ++Y  ++       +  +  S  + +  N       I N +
Sbjct: 293 NIFDSVIRK----GIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIM 348

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
               A    ID A+ +FD+M  + +  + + +G  I   C   KLG+V    D+   + N
Sbjct: 349 FCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALC---KLGRV----DDAVLKFN 401

Query: 221 SMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            MI+  +   +     +++G C   + E+A ++  E+  +  + D + +  +       G
Sbjct: 402 QMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREG 461

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V E + ++    ++GV P    Y   + G  +  RI EA +L +VIVS     D    N
Sbjct: 462 RVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYN 521

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+ G   +     A   F  M+ KG  P + T + +   L +  +  E  E+Y  +  +
Sbjct: 522 TLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINS 581

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN++++ LC +  + EA+ +   +  K L  D+   N ++ A  +      A
Sbjct: 582 RTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDA 641

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L+  + A G   +++TY ++     + G +E    LF  M E G AP++    +L+  
Sbjct: 642 MDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRW 701

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L    ++  A    +K    +  L  S  ++ +IS+  RG +
Sbjct: 702 LLHRGDINRAGAYLSKLDEKNFSLEAST-TSMLISIYSRGEY 742



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 183/439 (41%), Gaps = 11/439 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN T   +  H      SLS   + +D ++     N ++ D  ++  +  +  +     
Sbjct: 304 KPNVTIYGILLHGYATEGSLSEMHSFLDLMVG----NGVSPDHHIFNIMFCAYAKKAMID 359

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +F+  K   + + P I    +L+  L   G +D+A+  F++M   G+      F  
Sbjct: 360 EAMHIFD--KMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSS 417

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++  C   K  +   +  EV  +   +   +V    ++   C+  RV EA +++D +  
Sbjct: 418 LVYGLCTVDKWEKAEELFFEVLDQGIRL--DTVFFNTLMCNLCREGRVMEAQRLIDLMLR 475

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              +PD I+Y  + +   L G + E   +L     +G+ P    Y   + G    RRI +
Sbjct: 476 VGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDD 535

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A  L   ++    T D    N ++ G   +     A   +  MI       + T + +  
Sbjct: 536 AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIIN 595

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK N  DE  +++  L + D   D+ + N+M+  L   GR  +A  +   +   GL P
Sbjct: 596 GLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVP 655

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  Y  + E   +E  L    +L+  M  +G + N +  N L+      G+I  A    
Sbjct: 656 DVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYL 715

Query: 494 HNMLEKGVAPDATTYTSLL 512
             + EK  + +A+T + L+
Sbjct: 716 SKLDEKNFSLEASTTSMLI 734


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/482 (23%), Positives = 199/482 (41%), Gaps = 76/482 (15%)

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASD 167
           V  N  + D   Y  +I  L + K  ++A       K   +   P++    +++  L  +
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLG--KMVSKGFHPDVYTYTAVIHALCVE 59

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  A K  +EM++R +  + + + V I   C+  ++ + +++L ++RK+    +  +V
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK---CVPTAV 116

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G CK +R  EA+ +L+E+    C PD   Y  +   F       +   V ++ 
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              G  P    Y   I GL  E R+                                  +
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRL----------------------------------K 202

Query: 348 SAIVFFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            AI  F  MI+ G  +P   T ++L    C+  K DE + + + ++      D+ +Y  +
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C   RL +AY ++ +M RKGL PDV  + SLM+  CRE+ L  A  +  +M    C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLF------------HNMLEKGVA------------ 502
           S  + TYN ++  +    ++E A +               N++ +G+             
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELV 382

Query: 503 ---------PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCR 552
                    PD   YT++++GLC+E  +  A  V+ K +     L  SI  ST +  LC 
Sbjct: 383 EEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCN 442

Query: 553 RG 554
            G
Sbjct: 443 AG 444



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 11/338 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G CK KR+E+A   L ++  +   PD   Y  V     +   + E    L++     
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
           + P    Y   I GL    R+ EA  L   +   K        N+LI  +   +  S A 
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAY 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M+  G +P + T + L    CK  KSD+ + V++ L A  +  D+ +Y+ ++  L
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195

Query: 411 CTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           C  GRL+EA  +   M + G   P+   YNSL+   CR   +  A  L ++M  +G S +
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  L++ F ++  ++ A  L + M  KG+ PD  T+TSL++GLC+E  L  A  +  
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 530 ----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
               KS +  V    +IL  +    CR      A K +
Sbjct: 316 EMRRKSCSPTVYTYNTILDGY----CRANQLEEARKFM 349



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 200/452 (44%), Gaps = 12/452 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++ +L +  +++     L+++    +T +   Y  +I  L +G    +A ++ +++
Sbjct: 48  TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +  C        NSL++ L        A  + +EM + G       +   I  FC++ K 
Sbjct: 108 RKKCVPTAVTY-NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 166

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAY 264
              L + +++  R        V    +I G CK  R++EA  +   + +   C P+ + Y
Sbjct: 167 DDALRVFEQLVAR--GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   F  MG + E   +L++  + G +P    Y   + G     R+ +A +L   +  
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 325 GKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              T D     +L+  +   +  S A+     M  K   PT+ T + +    C+ N+ +E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             +   +L   D   ++ S+N+M+  LC   R  EA  +++E +R+  +PDV  Y ++++
Sbjct: 345 ARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID 402

Query: 444 ACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
             CRE  +  A +++ +M    GC  N  TY+ LI+     G ++ A       +EKG  
Sbjct: 403 GLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA----RGYIEKGCV 458

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           P+  TY  L++   +    + A E+ +  V  
Sbjct: 459 PNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 35/236 (14%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L + LCK  + ++ +     + +  +  D+ +Y  ++  LC   RL EA   ++EM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 427 KRKGLDPDV----------------------------------SFYNSLMEACCREDLLR 452
             + L P+V                                    YNSL+   C+ +   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  L ++M  SGC  ++ TY  LI+ F +  + + ALR+F  ++ +G  PD  TY+ L+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLS 567
           +GLC+E  L+ A ++F + +     +  ++    +IS  CR G    A  LL  ++
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 184/428 (42%), Gaps = 47/428 (10%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++Y  ++  L    +++   ++L +++  K    +  Y  +I  L + +   +A
Sbjct: 76  NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNSLISGLCKAERASEA 134

Query: 139 FSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           + +  E+ ++     P+I    +L+         D+AL++F+++  RG     + +   I
Sbjct: 135 YDLLEEMVYS--GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  +L + + +   + K  + M N +V    +I GFC+  +++EA  +L+ +    
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPN-TVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PD + Y  +   F  +  + +   +L +  + G+ P    +   + GL  E R+ +A 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 317 E-LGEV--------------IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI---- 357
             LGE+              I+ G +   + +  A    +  +D    +V FN MI    
Sbjct: 312 HILGEMRRKSCSPTVYTYNTILDG-YCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLC 370

Query: 358 ------------EKGRV----PTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDM 400
                       E+ R     P +   + +   LC+  K DE   VY K+L       + 
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+ +++ LC +G L  A G I+    KG  P++  YN L++A  + +    A++L D 
Sbjct: 431 ITYSTLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 461 MFASGCSG 468
           M   G  G
Sbjct: 487 MVQRGFGG 494



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +++ N    D  +Y  ++  LC   RL +A   + +M  KG  PDV  Y +++ A C E+
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A+K  ++M     + N+ TY +LI    + G ++ A+ L   M +K V P A TY 
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYN 119

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           SL+ GLC+      A+++  + V    +      +T +   C+
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%)

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            + CS +  TY  LI    +V  +E AL     M+ KG  PD  TYT+++  LC E  L 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            A +   +  N ++       +  +  LC+ G    A  LL
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALL 104


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 177/388 (45%), Gaps = 13/388 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSLL+ L   G +    ++F  M    V+   + +G+ + + C+   +G  L +LD +  
Sbjct: 135 NSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKVLDRMSS 194

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE---CKPDFIAYRIVAEEFKLM 274
             + +    VI   ++ G CK  R+++A   +DE R+R+   C P+ + Y  +A+    +
Sbjct: 195 PGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDE-RMRQVHGCAPNTVTYNCLADACCRV 253

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA------KELGEVIVSGKFT 328
           G +     ++++  K GV P        + GL    R+  A      K    +   G   
Sbjct: 254 GDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAV 313

Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
               +++A +      +   A+  F+ M ++G  P       +   L +  +  +   + 
Sbjct: 314 TYSTLVSAFL---HCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIA 370

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +    +  D ++YN+++   C   RL EA+ + +EMK  GL PDV  YN+L+   C+ 
Sbjct: 371 ASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKA 430

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                  +L   M   GC  ++ T+  L+  + + G+ + AL++F +M E  + P+   Y
Sbjct: 431 GDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIY 490

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            +L++ LC+   +  A ++F++   ++V
Sbjct: 491 NTLIDFLCKSREVDVAIKLFDEMRENNV 518



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 107/527 (20%), Positives = 194/527 (36%), Gaps = 59/527 (11%)

Query: 26  PARKWTPLLEQTLHQLGLRDSLSPS-------LVARVINPY---LLTHHSLALGFFNWAS 75
           P+  +TP    TLH L  R  + P        L+AR  +P         SLA G     +
Sbjct: 72  PSHAFTPASLATLHSLAARHCIPPPSASLLSKLLARFSSPADAASFLRDSLAAG-----A 126

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
             P+ +    +++S+L +L  +  +  +  +   ++   +  D   Y  ++  L +    
Sbjct: 127 PAPDVS----TFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLV 182

Query: 136 QKAFSVFNEVKFNCEDIGPEIC-------------------------------------- 157
             A  V + +     D+  +I                                       
Sbjct: 183 GDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVT 242

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            N L       G ID A ++ + M   GV  + I     +   C   ++G  L    E R
Sbjct: 243 YNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKR 302

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                    +V    ++  F     V  A ++  E+  +   PD + Y  +       G 
Sbjct: 303 TTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGR 362

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + +   +    +K G       Y   I G   ++R+ EA +L E +       D    N 
Sbjct: 363 LVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNT 422

Query: 337 LIGSVSSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+  +      SA+      MI+ G  P++ T   L    CK  K+DE +++++ +    
Sbjct: 423 LLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEAR 482

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +   YN ++ FLC S  +  A  +  EM+   +  +V+ YN+L++    +++   A 
Sbjct: 483 IQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAF 542

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +L DQM    C+ +  T ++L+    E+GE E          EKG A
Sbjct: 543 ELMDQMKEERCTPDYVTMDVLMEWLPEIGETERLKCFMEQRDEKGGA 589



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 110/267 (41%), Gaps = 38/267 (14%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           +LA+  F+  + Q  +    + Y +++  L+ + ++    ++   +K     LD   Y  
Sbjct: 329 ALAMELFHEMADQ-GYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNI 387

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           +I    + K   +A  +F E+K     + P++   N+LL+ L   G      ++   M  
Sbjct: 388 LIGGFCRKKRLHEAHQLFEEMKG--AGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMID 445

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSM---LDEVRKRENSMINGSVIAVL-------- 231
            G + S + FG  +  +C+  K  + L +   + E R + N++I  ++I  L        
Sbjct: 446 DGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDV 505

Query: 232 ----------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
                                 ++ G       E+AF+++D+++   C PD++   ++ E
Sbjct: 506 AIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLME 565

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRT 296
               +G     +  ++++ + G A  T
Sbjct: 566 WLPEIGETERLKCFMEQRDEKGGAKLT 592



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L D + A   + ++ T+N L+S     G + G   LF +M E  V PD  TY  LL 
Sbjct: 115 ASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLN 174

Query: 514 GLCQETNLQAAFEVFNK--SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
            LC+   +  A +V ++  S   DV     IL+T +  LC+ G    A   +      + 
Sbjct: 175 RLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVH 234

Query: 572 HSDSHVILLKSLADA----REVEMAIEHIKWIQESSPT 605
               + +    LADA     +++MA + ++ +++   T
Sbjct: 235 GCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVT 272


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/482 (23%), Positives = 199/482 (41%), Gaps = 76/482 (15%)

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASD 167
           V  N  + D   Y  +I  L + K  ++A       K   +   P++    +++  L  +
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLG--KMVSKGFHPDVYTYTAVIHALCVE 59

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  A K  +EM++R +  + + + V I   C+  ++ + +++L ++RK+    +  +V
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK---CVPTAV 116

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G CK +R  EA+ +L+E+    C PD   Y  +   F       +   V ++ 
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              G  P    Y   I GL  E R+                                  +
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRL----------------------------------K 202

Query: 348 SAIVFFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            AI  F  MI+ G  +P   T ++L    C+  K DE + + + ++      D+ +Y  +
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C   RL +AY ++ +M RKGL PDV  + SLM+  CRE+ L  A  +  +M    C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLF------------HNMLEKGVA------------ 502
           S  + TYN ++  +    ++E A +               N++ +G+             
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELV 382

Query: 503 ---------PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCR 552
                    PD   YT++++GLC+E  +  A  V+ K +     L  SI  ST +  LC 
Sbjct: 383 EEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCN 442

Query: 553 RG 554
            G
Sbjct: 443 AG 444



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 11/338 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G CK KR+E+A   L ++  +   PD   Y  V     +   + E    L++     
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
           + P    Y   I GL    R+ EA  L   +   K        N+LI  +   +  S A 
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAY 135

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M+  G +P + T + L    CK  KSD+ + V++ L A  +  D+ +Y+ ++  L
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195

Query: 411 CTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           C  GRL+EA  +   M + G   P+   YNSL+   CR   +  A  L ++M  +G S +
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  L++ F ++  ++ A  L + M  KG+ PD  T+TSL++GLC+E  L  A  +  
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 530 ----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
               KS +  V    +IL  +    CR      A K +
Sbjct: 316 EMRRKSCSPTVYTYNTILDGY----CRANQLEEARKFM 349



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/459 (21%), Positives = 203/459 (44%), Gaps = 12/459 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++ +L +  +++     L+++    +T +   Y  +I  L +G    +A ++ +++
Sbjct: 48  TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +  C        NSL++ L        A  + +EM + G       +   I  FC++ K 
Sbjct: 108 RKKCVPTAVTY-NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 166

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAY 264
              L + +++  R        V    +I G CK  R++EA  +   + +   C P+ + Y
Sbjct: 167 DDALRVFEQLVAR--GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   F  MG + E   +L++  + G +P    Y   + G     R+ +A +L   +  
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 325 GKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              T D     +L+  +   +  S A+     M  K   PT+ T + +    C+ N+ +E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             +   +L   D   ++ S+N+M+  LC   R  EA  +++E +R+  +PDV  Y ++++
Sbjct: 345 ARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID 402

Query: 444 ACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
             CRE  +  A +++ +M    GC  N  TY+ L++     G ++ A       +EKG  
Sbjct: 403 GLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA----RGYIEKGCV 458

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           P+  TY  L++   +    + A E+ +  V     + +S
Sbjct: 459 PNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGVVQS 497



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 35/236 (14%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L + LCK  + ++ +     + +  +  D+ +Y  ++  LC   RL EA   ++EM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 427 KRKGLDPDV----------------------------------SFYNSLMEACCREDLLR 452
             + L P+V                                    YNSL+   C+ +   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  L ++M  SGC  ++ TY  LI+ F +  + + ALR+F  ++ +G  PD  TY+ L+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLS 567
           +GLC+E  L+ A ++F + +     +  ++    +IS  CR G    A  LL  ++
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +++ N    D  +Y  ++  LC   RL +A   + +M  KG  PDV  Y +++ A C E+
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A+K  ++M     + N+ TY +LI    + G ++ A+ L   M +K V P A TY 
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYN 119

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           SL+ GLC+      A+++  + V    +      +T +   C+
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%)

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            + CS +  TY  LI    +V  +E AL     M+ KG  PD  TYT+++  LC E  L 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            A +   +  N ++       +  +  LC+ G    A  LL
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALL 104


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 185/404 (45%), Gaps = 9/404 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALK 175
           D+  +  +I  L +     +A   F++  F      P +    +++  L   G    A  
Sbjct: 164 DAVTFNTLINGLCKVGKFAQAVEFFDD--FEASGCQPTVYTYTTIINGLCKIGETTAAAG 221

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIH 234
           +F +M   G + + + + + I   C++  + + L +   ++ +    I+  +     +I 
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR---ISPDIFTYNSLIQ 278

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G C  +R +EA  +L+E+      P+   + ++ +     G V E + V K   ++GV P
Sbjct: 279 GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEP 338

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   + G  +   I EA++L + +++     D    N LI G   +     A   F
Sbjct: 339 DVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLF 398

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N MI +G  P     + L   LC+  +  E  +++K + +N    D+ +Y++++   C  
Sbjct: 399 NEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKE 458

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L +A+ + + M+   L PD++ YN L++A C+   L+ A+KL+ ++F  G   N++ Y
Sbjct: 459 GYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIY 518

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             +I+   + G ++ AL  F NM   G  PD  +Y  ++ G  Q
Sbjct: 519 TTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQ 562



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 180/405 (44%), Gaps = 11/405 (2%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +F +M   G++   + F   I   C+  K  Q +   D+    E S    +V  
Sbjct: 146 VDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF---EASGCQPTVYT 202

Query: 230 -VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLK 285
              II+G CK      A  +  ++    C+P+ + Y I+ +     KL+    +    +K
Sbjct: 203 YTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMK 262

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
            KR   ++P    Y   I GL   RR  EA  L   + S     +    N L+ ++    
Sbjct: 263 AKR---ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEG 319

Query: 346 PRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
             S A   F  M E G  P + T S+L      R +  E  +++  +       D  SYN
Sbjct: 320 KVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYN 379

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +++   C + R+ EA  +  EM  +GL PD   YN+L+   C+   LR A+ L+  M ++
Sbjct: 380 ILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSN 439

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +L TY++L+  F + G +  A RLF  M    + PD   Y  L++ +C+  NL+ A
Sbjct: 440 GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDA 499

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            ++F++     ++    I +T + +LC+ G    A +  R +  D
Sbjct: 500 RKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGD 544



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 200/442 (45%), Gaps = 15/442 (3%)

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDI 152
           + + +   A+ S+ KQ+++  ++ D      +I      +    AFSVF++ +K   +  
Sbjct: 105 VKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQ-- 162

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P+    N+L+  L   G    A++ FD+    G + +   +   I   C   K+G+  +
Sbjct: 163 -PDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC---KIGETTA 218

Query: 211 MLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
                +K E +    +V+   ++I   CK K V EA  +   ++ +   PD   Y  + +
Sbjct: 219 AAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ 278

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                    E   +L +   L + P    +   +  +  E ++ EA+ + + +   +  +
Sbjct: 279 GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMT--EMGV 336

Query: 330 DDDVL---NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           + DV+   + + G    ++   A   F+ MI KG  P   + + L K  CK  + DE  +
Sbjct: 337 EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQ 396

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++  +       D  +YN ++  LC  GRLREA  + + M   G  PD+  Y+ L++  C
Sbjct: 397 LFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFC 456

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E  L  A +L+  M ++    ++  YNILI    + G ++ A +LF  +  +G+ P+  
Sbjct: 457 KEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQ 516

Query: 507 TYTSLLEGLCQETNLQAAFEVF 528
            YT+++  LC+E  L  A E F
Sbjct: 517 IYTTIINNLCKEGLLDEALEAF 538



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 17/397 (4%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKM 176
            Y  II  L +   T  A  +F ++    E+ G  P +   N L+  L  D  ++ AL +
Sbjct: 202 TYTTIINGLCKIGETTAAAGLFKKM----EEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F  M  + +      +   I   C   +  +  ++L+E+    N M N     VL+    
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSL-NIMPNIFTFNVLV-DAI 315

Query: 237 CKGKRVEEA---FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           CK  +V EA   FK + E+ +   +PD + Y  +   + L   + E   +       G  
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGV---EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCK 372

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G    +RI EAK+L   ++    T D+   N LI  +  +   R A   
Sbjct: 373 PDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDL 432

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  M   G +P L T S L    CK     +   +++V+ +     D+  YN+++  +C 
Sbjct: 433 FKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCK 492

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L++A  +  E+  +GL P+V  Y +++   C+E LL  A + +  M   GC  +  +
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFS 552

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
           YN++I  F +  +   A +L   M ++G   +A T T
Sbjct: 553 YNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 142/312 (45%), Gaps = 1/312 (0%)

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD     I+ + F  +  V     V  K  KLG+ P    +   I GL    +  +A E 
Sbjct: 128 PDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEF 187

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCK 377
            +   +            +I  +  I   +A    F  M E G  P + T + L  +LCK
Sbjct: 188 FDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK 247

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               +E ++++  + A     D+ +YN ++  LC   R +EA  ++ EM    + P++  
Sbjct: 248 DKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFT 307

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N L++A C+E  +  A+ ++  M   G   ++ TY+ L+  +S   EI  A +LF  M+
Sbjct: 308 FNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMI 367

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            KG  PDA +Y  L++G C+   +  A ++FN+ ++  +       +T +  LC+ G   
Sbjct: 368 TKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLR 427

Query: 558 VATKLLRGLSSD 569
            A  L + + S+
Sbjct: 428 EAQDLFKNMHSN 439


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/514 (22%), Positives = 227/514 (44%), Gaps = 11/514 (2%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           +W  L +  L+ +     L+P  V +V+N  L T    AL FF WA +Q  + H+  +Y 
Sbjct: 165 QWECLQDNFLNSMA--QDLNPDAVVKVLN--LQTDAQNALRFFQWADKQEGYDHNTDAYF 220

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQG--KNTQKAFSVFNEV 145
           +++  L  ++    + S+L++++     +  S+ + F++     G  K + +AF++  E+
Sbjct: 221 TMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEM 280

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            +    I     NS+L  L  +  +D A  +F +M + GV  + + +   I  F    K+
Sbjct: 281 GYEPGLIDTAY-NSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKM 339

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              + +LD++   +N+     V   ++I   CK K +E+A+ VL ++R   C+P+   Y 
Sbjct: 340 EDAMKLLDDMI--QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYN 397

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +    +    E   ++    + GV P    Y     GL   RR+  AKE+    ++ 
Sbjct: 398 ALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALAR 457

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +    N L+ G         A+     M +    P   T + L + L + N+  + 
Sbjct: 458 GLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDA 517

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + ++  +    Y  + ++ N++   L   G  ++A    + MK +G     S Y   +  
Sbjct: 518 LRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHC 577

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
                 +  A+ L  +M   G S NL TYN +I  F   G ++ A  + + M+E G+ PD
Sbjct: 578 LSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPD 637

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
             +Y  L++    +   Q A +++  ++   V+L
Sbjct: 638 TGSYNILIKEFHNQGRTQDADQLYATALERGVVL 671



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTL--STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           + ++  FN M E G  P L  +  +++  +L K  K D    ++  +  N    +  +Y 
Sbjct: 268 KESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYT 327

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            M+       ++ +A  ++ +M +    PDV  Y  ++ A C+  ++  A  +  +M  +
Sbjct: 328 SMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN 387

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           GC  N+ TYN LI     V   E AL L   M + GV P+  TYT L  GLC+   L  A
Sbjct: 388 GCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRA 447

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKS 582
            E+FN+++   +   R   +T +   CR    + A  +L+ +  +    D  ++  L++ 
Sbjct: 448 KEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQG 507

Query: 583 LADAREVEMAI 593
           L    ++  A+
Sbjct: 508 LVQGNQLPDAL 518



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 141/311 (45%), Gaps = 7/311 (2%)

Query: 288 RKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +++G  P   D  Y   ++ L+  +++  A+ L   +++   + ++    ++I      +
Sbjct: 278 KEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKE 337

Query: 346 P-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
               A+   + MI+    P + T + +   LCKR   ++   V + +  N    ++ +YN
Sbjct: 338 KMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYN 397

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++  LC   R  EA  ++  M++ G+ P++  Y  L    C+   L  AK+++++  A 
Sbjct: 398 ALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALAR 457

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   N  TYN L++ +     +  A+ +   M +    PD  TYT+L++GL Q   L  A
Sbjct: 458 GLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDA 517

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS---HVILLK 581
             + ++  N    +    L+     L R G+   A+   R +  D G + S   + + + 
Sbjct: 518 LRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRM-KDRGFAYSASDYYLAIH 576

Query: 582 SLADAREVEMA 592
            L+ A E+E A
Sbjct: 577 CLSTAGEMEEA 587


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 224/489 (45%), Gaps = 21/489 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +++ L L+ + +    +LK+++   I      +  I+ +L + K   +A S F+ V
Sbjct: 6   SYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYFHSV 65

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                D+      +L+  LA  G ID A ++F+EMS  G +   + +   I    +  + 
Sbjct: 66  SPR-SDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQ-CVVAYTAIINALFKAHRP 123

Query: 206 GQVLSMLDEV--RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            Q ++  + +  RK +  +   +V+    I G CK  ++  A +V  E+  +  KPD I 
Sbjct: 124 DQAIACFERMVARKCDPDLRTFTVV----ITGLCKAGKLNRACEVFQEMNRKGWKPDIIV 179

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELG 319
           Y  + +       + E   +L++    G+ P    Y  FI GL    R+ EA    +E+G
Sbjct: 180 YTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMG 239

Query: 320 EVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           ++  +       +VL+ + G  V       A+   + M++KG    +   +NL   L   
Sbjct: 240 KMCAA-------EVLHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYV 292

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            ++DE  E+++ +       D  +Y ++VS  C  G+++ A  V++ M   GL+ +   Y
Sbjct: 293 RRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVY 352

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           NSLM+     +  R A  ++  M       ++ TYNIL+    ++G+   A  +   M E
Sbjct: 353 NSLMDGFLGVNRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRE 412

Query: 499 K-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           + G+ P   +Y +L+ GL +      A +VF + V++ V+      ++ + +L       
Sbjct: 413 RDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMD 472

Query: 558 VATKLLRGL 566
            AT+LLR +
Sbjct: 473 EATQLLRDM 481



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 190/439 (43%), Gaps = 11/439 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +I+ +L  + + +   +  +++   K   D   +  +I  L +     +A  VF E
Sbjct: 108 VAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQE 167

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  N +   P+I    SL+  L+    +D A K+  E+  RG++ + + +  FI   C+N
Sbjct: 168 M--NRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKN 225

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            ++ +   ++ E+ K    M    V+   I  G+    ++EEA  + DE+  +    D  
Sbjct: 226 GRVEEAGKLVREMGK----MCAAEVLHC-IFGGYVLEGKIEEALTLKDEMVKKGVTLDVR 280

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +      +    E + + +   + G  P T  Y   +     + ++  A ++ E++
Sbjct: 281 CYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVEIM 340

Query: 323 VSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            +     +  V N+L+     ++  R AI  ++ M+ K   P++ T + L   LCK  ++
Sbjct: 341 DAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKLGQT 400

Query: 382 DELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +   V + +   D     + SY  ++  L  +GR  EA  V  EM   G+ PD     S
Sbjct: 401 ADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTS 460

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++A    D +  A +L   M   G + +   YN L+       ++  A  +   M++  
Sbjct: 461 LIQALAMADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDVLVEMMDNS 520

Query: 501 VAPDATTYTSLLEGLCQET 519
             PD +T+ ++  G   +T
Sbjct: 521 CVPDGSTFRAMKLGFKADT 539



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 20/355 (5%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G C   R   A+++L E+     K   + + I+      + ++ ER+ V +     
Sbjct: 9   IVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGII------LKALCERKEVDQALSYF 62

Query: 291 -GVAPRTN----DYREFILGLIVERRICEAKELGEVIVSGK---FTIDDDVLNALIGSVS 342
             V+PR++     Y   I+GL    RI  A EL E + S           ++NAL     
Sbjct: 63  HSVSPRSDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQCVVAYTAIINALF---K 119

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           +  P  AI  F  M+ +   P L T + +   LCK  K +   EV++ ++   +  D+  
Sbjct: 120 AHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIV 179

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  +V  L  +  + EA  ++QE+  +G+ P    Y S +   C+   +  A KL  +M 
Sbjct: 180 YTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREM- 238

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              C+  +   + +   +   G+IE AL L   M++KGV  D   YT+L+ GL       
Sbjct: 239 GKMCAAEV--LHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRND 296

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
            A E+F   V    +         +   C++G    A K++  + +    ++ HV
Sbjct: 297 EAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHV 351


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 207/489 (42%), Gaps = 55/489 (11%)

Query: 67  ALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           A   F+  +QQ   PN     ++Y+S++ +L  +R ++    +L+Q+  N +  D+  Y 
Sbjct: 230 ACDLFHEMTQQGVPPNV----VTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 124 FIIPSLIQGKNT----QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
               +LI G +T    ++A  +F E+           C++ +A L   G I+ A + FD 
Sbjct: 286 ----TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDS 341

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  +G + + I +   +  +     L   +S L  +  R+  + N  V  +L+ +G+ K 
Sbjct: 342 MLAKGHKLNIISYSTLLHGYATAGCLVD-MSNLFNLMVRDGIVPNQHVFNILV-NGYAKC 399

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             V EA  + ++++ R   PD + Y  V   F  MGS+ +           GV P    Y
Sbjct: 400 GMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVY 459

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
           +  I G      + +A+EL                      V  I              K
Sbjct: 460 QCLIQGFCTHGDLVKAEEL----------------------VYEIR------------NK 485

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + + ++L  +LCK  +  E   ++ ++       D+  +  ++   C  G++ EA
Sbjct: 486 GLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEA 545

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + V   M   G++PD+  Y +L+  CC+   +     L+ ++   G      TY I++  
Sbjct: 546 FRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDG 605

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHD 535
               G    A  +F  M+E G+A    TY+ LL GLC+    + A  VF K    +V  D
Sbjct: 606 LFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFD 665

Query: 536 VMLARSILS 544
           +++   ++S
Sbjct: 666 IVILNIMIS 674



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 210/480 (43%), Gaps = 23/480 (4%)

Query: 85  LSYHSILKSL-SLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           +SY ++LKS+    R   A+D +   VK       +  VY  ++  L +     +A  +F
Sbjct: 175 ISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLF 234

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E+    + + P +   NS++  L     +D A  +  +M   GV+   + +   I  + 
Sbjct: 235 HEM--TQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYS 292

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  Q + M  E+  R   +I  +V     +   CK  R+EEA +  D +  +  K +
Sbjct: 293 TLGQWKQAVRMFKEMTSR--GVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLN 350

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  +   +   G + +   +     + G+ P  + +   + G      + EA  + E
Sbjct: 351 IISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFE 410

Query: 321 VIVSGKFTIDDDVLNAL-----IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +   K  ++ DVL  L        + S+D   A+  FN MI+KG  P  +    L +  
Sbjct: 411 DM--QKRGLNPDVLTYLAVIHAFCRMGSMD--DAMDKFNHMIDKGVEPNFAVYQCLIQGF 466

Query: 376 CKRN---KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           C      K++ELV  Y++ +       + S+  +++ LC  GR+ EA  +   + R G  
Sbjct: 467 CTHGDLVKAEELV--YEIRNKG-LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEK 523

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            DV+ + SL++  C    +  A ++ D M + G   ++ TY  L++   + G I+  L L
Sbjct: 524 ADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLIL 583

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  +L KGV P   TY  +L+GL       AA E+F + +   + +     S  +  LCR
Sbjct: 584 FRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCR 643



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 151/340 (44%), Gaps = 12/340 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMG-SVFEREVVLKKKR 288
           ++ G C  KR +EA  VL   R+ E  C PD I+Y  V +     G S +  +++    +
Sbjct: 144 LLRGLCDAKRTDEAVDVLFH-RMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVK 202

Query: 289 KLGVAP-RTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSS 343
           + G  P     Y   + GL  E ++ EA     E+ +  V       + V++AL     +
Sbjct: 203 QGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALC-KARA 261

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +D    I+    M+  G  P   T + L        +  + V ++K +++     +  + 
Sbjct: 262 VDKAQGIL--RQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTC 319

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +  V+FLC  GR+ EA      M  KG   ++  Y++L+        L     L++ M  
Sbjct: 320 STFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVR 379

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N   +NIL++ +++ G +  A+ +F +M ++G+ PD  TY +++   C+  ++  
Sbjct: 380 DGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDD 439

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           A + FN  ++  V    ++    +   C  G  + A +L+
Sbjct: 440 AMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELV 479



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 17/235 (7%)

Query: 346 PRSAIVFFNFMIE----KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           P  A+  FN M      +  +PT+ T S L    C+  + D     +  L       D+ 
Sbjct: 80  PALAVALFNRMSTGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVI 139

Query: 402 SYNVMVSFLCTSGRLREAYGVI-QEMKRKGLDPDVSFYNSLMEACCRE-------DLLRP 453
             + ++  LC + R  EA  V+   M   G  PD   Y++++++ C +       D+LR 
Sbjct: 140 VVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRM 199

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A K        GC  N+  Y+ ++    + G++  A  LFH M ++GV P+  TY S++ 
Sbjct: 200 AVKQ-----GGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIH 254

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            LC+   +  A  +  + V + V       +T +      G +  A ++ + ++S
Sbjct: 255 ALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTS 309


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 128/614 (20%), Positives = 257/614 (41%), Gaps = 18/614 (2%)

Query: 11  TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           T  S  II    R     +W+  +E  L   GL   L P +V +V+    L+   +A+ F
Sbjct: 59  TETSCVIIG---RALECGRWSESVELELE--GLHVELDPFVVNKVLRG--LSDSGMAVRF 111

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           + WA  +P F H+  +   I+  L +      +   L +V+   +    S+YR ++    
Sbjct: 112 YWWAESRPGFYHNNFAIAYIISLLFVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYA 171

Query: 131 QGKNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           +          F+E V   C + G +  N  + V+  +   D   K ++    +G   + 
Sbjct: 172 RAGKFDSVIETFDEMVTSGCREFGVDY-NRFIGVMIKNCCFDLVEKYYNMALAKGFCLTP 230

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
             +  +I   C++ ++  V  +L ++ K             + +H  C   R+ +A +++
Sbjct: 231 FTYSRWITALCQSNRIELVEELLTDMDKF--GCFPDFWACNIYVHYLCGHNRLYDALQMV 288

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           +++ ++   PD + Y  V           E   + ++  + G+ P        I GL   
Sbjct: 289 EKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKN 348

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLS 366
           +++ EA EL   +++    ++  + NALI       SI+     V  +FM   G  P + 
Sbjct: 349 QKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTV--SFMQRNGCEPDVV 406

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L  + C    +D+   + + +  +    D  SYN+++  LC + +L +A+  + + 
Sbjct: 407 TYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDH 466

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              G   D+   N L++A CR   +  A  L+ +M   G   +  TY ILI+    +G  
Sbjct: 467 MEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYS 526

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
             A  LF  ML   + P+   Y  +L  LC+  + + A ++F +    +V       +T 
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQESSP 604
           +  L +    + A  L + + +     D+     ++  L D  +  +A E  +++ E+  
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGI 646

Query: 605 TMLQEISAELFASL 618
            + +++S  L + L
Sbjct: 647 ILDRDVSERLISVL 660


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 237/521 (45%), Gaps = 15/521 (2%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S++   F    Q  ++     +++ ++++ + SR+ + I  VL ++K     L  +++  
Sbjct: 46  SISPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFIL 105

Query: 125 IIPSLIQGKNTQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM-- 180
           I  +  +     +A + F+ +    +C+       NS+L V+  +G    A K +  +  
Sbjct: 106 IFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSF-NSVLNVIIQEGDFSYAFKFYLHVFG 164

Query: 181 -SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCK 238
            + +G + + + + + I   C   KLGQ+   +D  R+      N  V     +++G CK
Sbjct: 165 ANSKGFQPNLLTYNLIIKALC---KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCK 221

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            +RV+EA  +LDE++   C P+ + + ++ +     G +     ++      G  P    
Sbjct: 222 ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVT 281

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I GL ++ ++ +A  L E +VS K   +      +I G V        +     M 
Sbjct: 282 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 341

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E+G+       S+L   L K  KS+  V ++K ++      ++  Y   +  LC   +  
Sbjct: 342 ERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPD 401

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  ++QEM  KG  P+   Y+SLM+   ++   + A  +W +M +     N+   ++L+
Sbjct: 402 EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLL 461

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +   E G +  AL ++ +ML +G+ PD   Y+S+++GLC   ++    ++F +    +  
Sbjct: 462 NGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPK 521

Query: 538 LARSILSTFMI---SLCRRGHFLVATKLLRGLSSDLGHSDS 575
            +R  + T+ I   +LCR+ +   A  LL  +  +    DS
Sbjct: 522 -SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDS 561



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 207/476 (43%), Gaps = 34/476 (7%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     L+Y+ I+K+L    QI+      +++ +     D   Y  ++  L + +   
Sbjct: 171 QPNL----LTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 226

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +A  + +E++       P   N L+  L+ +G +  A K+ D M  +G   + + +   I
Sbjct: 227 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C   KL + LS+L+++    +  +   V    II+G  K +R E+   +L  +  R 
Sbjct: 287 HGLCLKGKLDKALSLLEKMV--SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 257 CKP-DFIAYRIVAEEFKLMGSVFEREVVL-KKKRKLGVAPRTNDYREFILGLIVERRICE 314
            K  ++I   +++  FK   S  E  V L K+  + G  P    Y  FI GL  + +  E
Sbjct: 345 QKANEYIYSSLISGLFKEGKS--ENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE 402

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A+++ + ++S  F  +    ++L+ G     D + AI+ +  M+ +     +   S L  
Sbjct: 403 AEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 462

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK--RKGL 431
            LC+  +  E + V+  +       D+ +Y+ M+  LC  G + +   +  EM+      
Sbjct: 463 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKS 522

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE--------- 482
            PDV  YN L  A CR+D L  A  L + M   GC  +  T NI +    E         
Sbjct: 523 RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGR 582

Query: 483 --VGEIE----------GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             + E+            ALR+   ML + + P+ +T++ +++  C+   ++   +
Sbjct: 583 LFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 638


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 220/491 (44%), Gaps = 10/491 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y +++  L  SR+ N   ++L ++   ++  +  VY  +I   ++  N  +AF +  E
Sbjct: 293 FTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKE 352

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            ++L+  L   G +D A  +  +M        TI + + I     +  
Sbjct: 353 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHS 412

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                 +L E+   EN+ I+ +V    ++IHG C+    E+A  +L+E+  +  KP+   
Sbjct: 413 KKDAFRLLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 469

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   +   G+V     +  K  K+ V P    Y   I GL    R+ E+ +    + 
Sbjct: 470 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 529

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 ++   + LI G + + D  SA      M++ G  P      +L ++  K +  +
Sbjct: 530 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIE 589

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           ++   +K +       D   Y +++  L +SG +  A+ V+  +++ G  PDV  Y+SL+
Sbjct: 590 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 649

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+      A  + D+M   G   N+  YN LI    + G+I  A  +F+++L KG+ 
Sbjct: 650 SGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV 709

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSILSTFMISL--CRRGHFL 557
           P+  TYTSL++G C+  ++  AF ++N+ +   +       S+L+T   S     +  FL
Sbjct: 710 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFL 769

Query: 558 VATKLLRGLSS 568
           +    LRG +S
Sbjct: 770 IEEMFLRGHAS 780



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 3/408 (0%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A K+  EM  RG   +T+ + V I   C +  + +      ++   +  ++       
Sbjct: 239 DTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME--DYGLVPDGFTYG 296

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G CK +R  EA  +LDE+   E KP+ + Y  + + F   G+  E   ++K+    
Sbjct: 297 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 356

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV P    Y   + GL    ++  A  L + +V      D    N +I G       + A
Sbjct: 357 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 416

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               + M   G  P + T S +   LC+  + ++  ++ + ++      +   Y  ++S 
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G +  A  +  +M +  + PD+  YNSL+    +   +  + K + QM   G   N
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 536

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ LI  + + G++E A +L   ML+ G+ P+   Y  LLE   +  +++     F 
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 596

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
             ++  VML   I    + +L   G+   A ++L G+  +    D HV
Sbjct: 597 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 644



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 194/452 (42%), Gaps = 44/452 (9%)

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +  +CK +  + A KVL E+R R C  + + Y ++       G+V E     K     G+
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
            P    Y   I GL   RR  EAK L + +   +   +  V   LI G +   +   A  
Sbjct: 289 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFK 348

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL-------------------- 391
               M+  G  P   T  NL + LCK  + D    + K +                    
Sbjct: 349 MIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHF 408

Query: 392 ---SANDYF---TDME---------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              S  D F   ++ME         +Y++M+  LC SG   +A  +++EM  KGL P+  
Sbjct: 409 RHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAF 468

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y  L+   CRE  +  A +++D+M       +L  YN LI   S+VG +E + + F  M
Sbjct: 469 VYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM 528

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILSTFMISLC 551
            E+G+ P+  TY+ L+ G  +  +L++A ++  + ++     +DV+    + S F     
Sbjct: 529 QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDI 588

Query: 552 RRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
            +      + L +G+  D   +  + IL+ +L+ +  +E A   +  I+++       + 
Sbjct: 589 EKVSSTFKSMLDQGVMLD---NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 645

Query: 612 AELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
           + L + L  ++  E    +L  + +K +D  I
Sbjct: 646 SSLISGLCKTADREKAFGILDEMSKKGVDPNI 677



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 167/396 (42%), Gaps = 3/396 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+A L   G ++ A     +M   G+      +G  I   C++ +  +  ++LDE+  
Sbjct: 261 NVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSC 320

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +    V+   +I GF +    +EAFK++ E+     +P+ I Y  +      MG +
Sbjct: 321 AE--LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 378

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
               ++LK+  +    P T  Y   I G        +A  L   + +   + +    + +
Sbjct: 379 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIM 438

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   S +P  A      M  KG  P     + L    C+        E++  ++  + 
Sbjct: 439 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 498

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  YN ++  L   GR+ E+     +M+ +GL P+   Y+ L+    +   L  A++
Sbjct: 499 LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQ 558

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L  +M  +G   N   Y  L+  + +  +IE     F +ML++GV  D   Y  L+  L 
Sbjct: 559 LVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 618

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              N++AAF V +    +  +    + S+ +  LC+
Sbjct: 619 SSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 127/549 (23%), Positives = 224/549 (40%), Gaps = 36/549 (6%)

Query: 43  LRDSLSP-SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           +RDS  P ++   +I      HHS     F   S+  N   SP   +Y  ++  L  S +
Sbjct: 389 VRDSHRPDTITYNLIIEGHFRHHSKK-DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 447

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-C- 157
                 +L+++    +  ++ VY  +I    +  N   A  +F+  K    ++ P++ C 
Sbjct: 448 PEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD--KMTKVNVLPDLYCY 505

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+  L+  G ++ + K F +M  RG+  +   +   I  + +N  L     ++   R 
Sbjct: 506 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ--RM 563

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  +    VI + ++  + K   +E+       +  +    D   Y I+       G++
Sbjct: 564 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 623

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
                VL    K G  P  + Y   I GL   +     K  G +    K  +D +++  N
Sbjct: 624 EAAFRVLSGIEKNGSVPDVHVYSSLISGLC--KTADREKAFGILDEMSKKGVDPNIVCYN 681

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI G   S D   A   FN ++ KG VP   T ++L    CK         +Y  + A 
Sbjct: 682 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 741

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D   Y+V+ +   ++G L +A  +I+EM  +G    +S +N+L++  C+   ++  
Sbjct: 742 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQET 800

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEI---------------EGALR----LFHN 495
            KL   +   G   N  T   +IS  SE G++               E A R    LF +
Sbjct: 801 LKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD 860

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+ +G  P       ++   C+E NL  A  + +  V     +  S     + +LCR+G 
Sbjct: 861 MINQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGK 919

Query: 556 FLVATKLLR 564
              A  LL+
Sbjct: 920 LSEALNLLK 928



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 152/364 (41%), Gaps = 24/364 (6%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  +L+S   S  I  + S  K +    + LD+ +Y  +I +L    N + AF V + ++
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N       + +SL++ L      + A  + DEMS +GV+ + + +   I   C++  + 
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 694

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
              ++ + +  +   ++   V    +I G CK   +  AF + +E+      PD   Y +
Sbjct: 695 YARNVFNSILAK--GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 752

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV--- 323
           +       G + E+ + L ++  L      + +   + G     ++ E  +L  VI+   
Sbjct: 753 LTTGCSSAGDL-EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRG 811

Query: 324 -----------------SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                            +GK +    +   L    S    R     F  MI +G++P L 
Sbjct: 812 LVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP-LD 870

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
            + ++ ++ CK    D+ + +  V+ A        SY  +V  LC  G+L EA  +++EM
Sbjct: 871 VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 930

Query: 427 KRKG 430
            ++G
Sbjct: 931 DKRG 934



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           + S +EA C+      AKK+  +M   GC  N  TYN+LI+     G +E A     +M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 498 EKGVAPDATTYTSLLEGLCQ 517
           + G+ PD  TY +L+ GLC+
Sbjct: 285 DYGLVPDGFTYGALINGLCK 304


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 187/398 (46%), Gaps = 14/398 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           NS+LA LA    +    +++  M     V    + +G+ +   C+  ++G  L +LD + 
Sbjct: 140 NSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMS 199

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL--RIRECKPDFIAYRIVAEEFKLM 274
           +++  +    V    ++ G CK  RV+EA   +++    +  C P+ + Y  + + F  +
Sbjct: 200 RQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRV 259

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTID 330
           G++     +++K    GV          + GL    R   A    +E   V   GK   +
Sbjct: 260 GNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--N 317

Query: 331 DDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               + L+G++  + +   A+  F+  + +G  P       +   L +  + ++   +  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +    +  D ++YN++++  C   RL EAY ++QEMK  G+ PDV  YN+L+   C+  
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
                 +L  +M   GC  ++ T+  L+  + +VG+I+ ALR+  +M E G+ P+   Y 
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497

Query: 510 SLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
           +L++ LC+  ++  A E+F+    KSV  +V    ++L
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/486 (20%), Positives = 187/486 (38%), Gaps = 51/486 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            +++SIL +L+  R +  +  +   ++    +  D   Y  ++  L +      A  V +
Sbjct: 137 FAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLD 196

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKF 199
            +     DI P++   N+++  L   G +  AL   ++   S  G   +T+ +   I  F
Sbjct: 197 GMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI--RE 256
           C   ++G +    + V K EN  +  +++ +  I+ G C+  R   A +   E R    E
Sbjct: 257 C---RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPE 313

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            K + + Y  +        +V     +  +K   G +P    Y   I GL    R+ +A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 317 ELGEVIVSGKFTIDDDVLNALI------------------------------------GS 340
            +   +    F +D    N LI                                    GS
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             + D  +       MI+ G  P++ T   L    CK  K DE + + + +  +    + 
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             YN ++ FLC  G +  A  +  EMK K +  +V+ +N+L++    +++   A +L DQ
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLF----HNMLEKGVAPDATTYTSLLEGLC 516
           M    C  +  T ++L+     +GE +   R      H   ++ V+   + Y     GL 
Sbjct: 554 MREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIVSDRTSAYFHFATGLA 613

Query: 517 QETNLQ 522
           +   L 
Sbjct: 614 ETFTLH 619


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 221/505 (43%), Gaps = 15/505 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  FN      N       ++ IL SL      +   S  KQ+++ +I  D   +  +I
Sbjct: 47  AVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILI 106

Query: 127 PSLIQGKNTQKAFSVFNEV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
                  +   AFSV  ++    F+ + +      +L+  L  +G +  AL   D++  +
Sbjct: 107 NCFCHLGHLNFAFSVLAKIFKLGFHPDTV---TITTLIKGLCLNGKVREALHFHDDVIAK 163

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
           G     + +G  I   C   K G+  + L  +RK +  ++  +V+    II   CK K V
Sbjct: 164 GFHLDQVSYGTLINGLC---KTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLV 220

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
             A  +  E+ ++   PD + Y  +     ++G + E   +  +     + P    +   
Sbjct: 221 IHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNIL 280

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDPRSAIVF-FNFMIEK 359
           + GL  E  + +A+ +  V++  K  +D +++  N+L+     +   +   F FN M  +
Sbjct: 281 VDGLCKEGEMKKARNVLAVMI--KQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARR 338

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + + S +   LCK    DE V ++K + +     +  +YN ++  L   GR+ +A
Sbjct: 339 GVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDA 398

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + ++ EM  +G   DV  Y+SL++A C+   +  A  L  ++   G   N+ TY IL+  
Sbjct: 399 WDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDG 458

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + G ++ A  ++ ++L KG   D   Y  ++ GLC+E     A  + +K  ++  +  
Sbjct: 459 LCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPD 518

Query: 540 RSILSTFMISLCRRGHFLVATKLLR 564
                T + +L        A KLLR
Sbjct: 519 AVTYETLVRALFENDKNDKAVKLLR 543



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 175/431 (40%), Gaps = 6/431 (1%)

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-CNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +PS I   N   A S FN +      + P    N +L+ L    +   A+    +M  + 
Sbjct: 37  LPSFID--NVDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQ 94

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           ++     F + I  FC    L    S+L ++ K        +V    +I G C   +V E
Sbjct: 95  IQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKL--GFHPDTVTITTLIKGLCLNGKVRE 152

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A    D++  +    D ++Y  +       G       VL+K   L V P    Y   I 
Sbjct: 153 ALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIID 212

Query: 305 GLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            L  ++ +  A +L  E+IV   F         + G +     + A+  FN M+ K   P
Sbjct: 213 SLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKP 272

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + L   LCK  +  +   V  V+      +++ +YN ++       +  +A  V 
Sbjct: 273 DVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             M R+G+ PDV  Y+ ++   C+  ++  A  L+ +M +   + N  TYN LI    + 
Sbjct: 333 NTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKY 392

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G I  A  L + M  +G   D  TY+SLL+ LC+   +  A  +  K  +  +       
Sbjct: 393 GRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTY 452

Query: 544 STFMISLCRRG 554
           +  +  LC+ G
Sbjct: 453 TILVDGLCKNG 463



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 135/339 (39%), Gaps = 38/339 (11%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K      A     ++ +++ +PD   + I+   F  +G +     VL K  KLG
Sbjct: 70  ILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLG 129

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P T      I GL +  ++ EA    + +++  F +D      LI             
Sbjct: 130 FHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLING----------- 178

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
                                  LCK  ++   ++V + +       ++  YN ++  LC
Sbjct: 179 -----------------------LCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLC 215

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
               +  A  +  EM  K + PDV  Y +L+  C     L+ A  L++QM       ++ 
Sbjct: 216 KDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVY 275

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG--LCQETNLQAAFEVFN 529
           T+NIL+    + GE++ A  +   M+++GV  +  TY SL++G  L ++ N +A F VFN
Sbjct: 276 TFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQEN-KATF-VFN 333

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                 V       S  +  LC+      A  L + + S
Sbjct: 334 TMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHS 372


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 186/427 (43%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D AL  F+ M H+    ST+ F   +    +      +LS+    R+ ++  I   V  
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL---SRQMDSFGIPPDVYT 107

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+  C   RV+ AF  L ++     +PD   +  +     + G + E   +  K  
Sbjct: 108 LAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI 167

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   I GL        A  L   +  G    +  V + LI S+       
Sbjct: 168 GEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ MI KG  P + T ++L   LCK  +   +  +   +  +    D+ + N +V
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G + EA+ V+  M  +G++P+V  YN+LM+  C  + +  A K++D M    C 
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  ++ A+ LF  M  + + P+  TY +L+ GLC    LQ A  +
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V    +       T    LC+  H   A  LL+ +       D  +   +L  +  
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 468 AGELEDA 474



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 208/463 (44%), Gaps = 17/463 (3%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            QP+ T    ++ ++++ L +  +I     +  ++       +   Y  +I  L +  NT
Sbjct: 136 HQPDAT----TFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 136 QKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             A  +   + + NC+   P +   ++L+  L  D  +  A  +F EM  +G+  + + +
Sbjct: 192 SAAIRLLRSMEQGNCQ---PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTY 248

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDE 251
              I   C+  +   V ++++E+    +S I   V  +  ++   CK   V EA  V+D 
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMV---DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R  +P+ + Y  + +   L   V     V               Y   I G    + 
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
           + +A  L E +   + T +    N LI  +  +   + AI  F+ M+ +G++P L T   
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           LS  LCK    D+ + + K +  +++  D++ Y  ++  +C +G L +A  +   +  KG
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P+V  YN ++   C++ LL  A KL+ +M  +GCS N  TYN++   F    E    +
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEVFNKSV 532
            L   ML +G + D +T T+LL G+  +  L Q+  ++  K V
Sbjct: 546 ELLEEMLARGFSVDVST-TTLLVGMLSDDGLDQSVKQILCKYV 587



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 205/467 (43%), Gaps = 8/467 (1%)

Query: 67  ALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           AL  FN    +QP    S + ++ +L S++ ++  + + S+ +Q+    I  D      +
Sbjct: 54  ALSTFNRMLHKQP--PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I SL        AFS   ++             +L+  L  +G I  AL +FD+M   G 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
           + + + +G  I   C   K+G   + +  +R  E      +V+    +I   CK ++V E
Sbjct: 172 QPNVVTYGTLINGLC---KVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           AF +  E+  +   P+ + Y  +      +        ++ +     + P        + 
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
            L  E  + EA ++ ++++      +    NAL+ G     +   A+  F+ M+ K  V 
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 348

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + + + L    CK    D+ + +++ +S  +   +  +YN ++  LC  GRL++A  + 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EM  +G  PD+  Y +L +  C+   L  A  L   +  S    +++ Y  ++      
Sbjct: 409 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 468

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           GE+E A  LF N+  KG+ P+  TY  ++ GLC++  L  A ++F++
Sbjct: 469 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSE 515


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 187/398 (46%), Gaps = 14/398 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           NS+LA LA    +    +++  M     V    + +G+ +   C+  ++G  L +LD + 
Sbjct: 140 NSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMS 199

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL--RIRECKPDFIAYRIVAEEFKLM 274
           +++  +    V    ++ G CK  RV+EA   +++    +  C P+ + Y  + + F  +
Sbjct: 200 RQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRV 259

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTID 330
           G++     +++K    GV          + GL    R   A    +E   V   GK   +
Sbjct: 260 GNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--N 317

Query: 331 DDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               + L+G++  + +   A+  F+  + +G  P       +   L +  + ++   +  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +    +  D ++YN++++  C   RL EAY ++QEMK  G+ PDV  YN+L+   C+  
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
                 +L  +M   GC  ++ T+  L+  + +VG+I+ ALR+  +M E G+ P+   Y 
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497

Query: 510 SLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
           +L++ LC+  ++  A E+F+    KSV  +V    ++L
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 178/440 (40%), Gaps = 12/440 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            +++SIL +L+  R +  +  +   ++    +  D   Y  ++  L +      A  V +
Sbjct: 137 FAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLD 196

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKF 199
            +     DI P++   N+++  L   G +  AL   ++   S  G   +T+ +   I  F
Sbjct: 197 GMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI--RE 256
           C   ++G +    + V K EN  +  +++ +  I+ G C+  R   A +   E R    E
Sbjct: 257 C---RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPE 313

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            K + + Y  +        +V     +  +K   G +P    Y   I GL    R+ +A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +   +    F +D    N LI G         A      M E G  P + T + L    
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK      + E+   +  +     + ++  +V   C  G++ EA  +++ M   G+ P+ 
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L++  C+   +  A +L+D+M       N+ T+N L+    +    E A  L   
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           M E+   PD  T   L+E L
Sbjct: 554 MREERCFPDYVTVDVLMEWL 573


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 215/489 (43%), Gaps = 7/489 (1%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H+P  + ++ IL S +  +  +   S+  ++++  I  D      +I            F
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++            N+L+  L   G +  AL   D++  +G + + + +   I   
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C   K+G   + +  +RK +  +    V+    II   CK + V EA+ +  E+ ++   
Sbjct: 175 C---KIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGIS 231

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
            D + Y  +   F ++G + E   +L +     + P    Y   +  L  E ++ EAK +
Sbjct: 232 ADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSV 291

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
             V++      D    + L+ G     + + A   FN M   G  P + T + L    CK
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 351

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE + ++K +   +    + +Y+ ++  LC SGR+   + +I EM+ +G   DV  
Sbjct: 352 NKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVIT 411

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+SL++  C+   L  A  L+++M       N+ T+ IL+    + G ++ A  +F ++L
Sbjct: 412 YSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLL 471

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            KG   +  TY  ++ G C++  L+ A  + +K  ++  +       T +I+L ++    
Sbjct: 472 TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDEND 531

Query: 558 VATKLLRGL 566
            A KLLR +
Sbjct: 532 KAEKLLRQM 540



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 166/373 (44%), Gaps = 19/373 (5%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+  F K K    A  +   L ++  +PD I   I+   F  MG +     VL K  K G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      I GL ++ ++ +A    + +++  F ++      LI  V  I D R+AI
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAI 184

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F   +  +   P +   + +   +CK     E   ++  ++      D+ +YN ++   
Sbjct: 185 KFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGF 244

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+L+EA G++ EM  K ++P+V  YN L++A C+E  ++ AK +   M  +    ++
Sbjct: 245 CIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  V E++ A  +F+ M   GV PD  TYT L+ G C+   +  A  +F +
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL-------------GH 572
               +++      S+ +  LC+ G       L+     RG  +D+             GH
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424

Query: 573 SDSHVILLKSLAD 585
            D  + L   + D
Sbjct: 425 LDRAIALFNKMKD 437



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 109/511 (21%), Positives = 221/511 (43%), Gaps = 57/511 (11%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT---------HSP--LSYHSILKSL 94
           SLS  L  + I P L+T + L   F +       F+         + P  ++ ++++K L
Sbjct: 80  SLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGL 139

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
            L  Q+        ++      L+   Y  +I  + +  +T+ A     ++         
Sbjct: 140 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDV 199

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
            + N+++  +     +  A  +F EM+ +G+    + +   I+ FC   KL + + +L+E
Sbjct: 200 VMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNE 259

Query: 215 VRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEFK 272
           +  +    IN +V    +++   CK  +V+EA  VL  + ++ C KPD I Y  + + + 
Sbjct: 260 MVLKT---INPNVYTYNILVDALCKEGKVKEAKSVL-AVMLKACVKPDVITYSTLMDGYF 315

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L+  V + + V      +GV P  + Y   I G       C+ K + E            
Sbjct: 316 LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF------CKNKMVDE------------ 357

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                           A+  F  M +K  VP + T S+L   LCK  +   + ++   + 
Sbjct: 358 ----------------ALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMR 401

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+ ++  LC +G L  A  +  +MK + + P++  +  L++  C+   L+
Sbjct: 402 DRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLK 461

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++++  +   G   N+ TYN++I+   + G +E AL +   M + G  P+A T+ +++
Sbjct: 462 DAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
             L ++     A ++  +      M+AR +L
Sbjct: 522 IALFKKDENDKAEKLLRQ------MIARGLL 546



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++++  +      A  L  ++   G   +L T NILI+ F  +G+I     +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L++G  PD  T  +L++GLC +  ++ A    +K +     L +   +T +  +C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            G    A K LR +   L   D  V++  ++ DA
Sbjct: 177 IGDTRAAIKFLRKIDGRLTKPD--VVMYNTIIDA 208


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 218/518 (42%), Gaps = 39/518 (7%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSR-----------QINAIDSV--------- 106
           AL FF W +++  F H+  S+ ++L  LS  R            +N  D+          
Sbjct: 73  ALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADA 132

Query: 107 ---LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
              +++    ++ L    Y F + SL +   T+    V++++    + + P+    N+++
Sbjct: 133 IQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQ--DGLLPDTVTYNTMI 190

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-----LDEVR 216
                +G +  A + F  +   G+E  T      +  +C   +L +   +     L   +
Sbjct: 191 KSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQ 250

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           + E S         ++I G C  K V +A  +   ++   C P+  A+  +       G 
Sbjct: 251 RNEYSY-------TILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGR 303

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V +  ++     + GV P    Y   I+G     R+ +A ++ E++       DD   N 
Sbjct: 304 VGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNT 363

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           LI  +       A    N  +++G  PT+ T +NL    C   K D+ + +   + ++  
Sbjct: 364 LIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 423

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D++ +  +++ L    RL+EA  ++ E+   GL P+V  Y S+++  C+   +  A +
Sbjct: 424 KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALE 483

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +   M   GC  N  TYN L+    +  ++  A+ L   M + G+ P+  TYT+LL+G C
Sbjct: 484 VLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC 543

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            E +   AF +F     + +       +    +LC+ G
Sbjct: 544 DEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG 581



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 192/462 (41%), Gaps = 9/462 (1%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  Q     S ++Y++++   S   ++N    + + ++ N    D   Y  +I  L   K
Sbjct: 313 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 372

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             +    + N VK   E   P +    +L+         D+AL+M ++M     +     
Sbjct: 373 TEEAEELLNNAVK---EGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG  I    +  +L +   +L+E+    N ++   +    II G+CK  +V+ A +VL  
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISA--NGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +    C+P+   Y  +         + +   +L K +K G+ P    Y   + G   E  
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
              A  L E++       D+     L  ++       A   ++F++ KG   T    + L
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG--RAEEAYSFIVRKGVALTKVYYTTL 605

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                K   +D    + + +       D  +Y+V++  LC   RL EA  ++ +M  +G+
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGI 665

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
              +  Y  L++   RE     AK+++++M +SG   +  TY + I+ + + G +E A  
Sbjct: 666 KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 725

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           L   M  +GVAPD  TY  L++G      +  AF    + V 
Sbjct: 726 LILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/548 (19%), Positives = 218/548 (39%), Gaps = 67/548 (12%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +  FT + +++ +++    ++ + +    +  ++  +K  LD  V+  +I SLI+    +
Sbjct: 385 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLK 444

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  + NE+  N   + P +    S++      G +D AL++   M   G + +   +  
Sbjct: 445 EAKELLNEISAN--GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNS 502

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   ++ KL + +++L +++K  + +I   +    ++ G C     + AF++ + +  
Sbjct: 503 LMYGLVKDKKLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 560

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              KPD  AY ++ +     G   E    + +K   GVA     Y   I G         
Sbjct: 561 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYTTLIDGF-------- 609

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                                       + D   A      MI++G  P   T S L   
Sbjct: 610 ------------------------SKAGNTD--FAATLIERMIDEGCTPDSYTYSVLLHA 643

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK+ + +E + +   +S       + +Y +++  +   G+   A  +  EM   G  P 
Sbjct: 644 LCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPS 703

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            + Y   + + C+E  L  A+ L  +M   G + ++ TYNILI     +G I+ A     
Sbjct: 704 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763

Query: 495 NMLEKGVAPDATTYTSLLE----------------GLCQETNLQAAFEVFNKSVNHDVML 538
            M+     P+  TY  LL+                G+     L   +++  + V H +  
Sbjct: 764 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 823

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
             +  S+ +   C+ G    A  LL     +GLS +    D + +L+K   D +  E A+
Sbjct: 824 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPN---EDIYTLLIKCCCDTKFFEKAL 880

Query: 594 EHIKWIQE 601
             +  + E
Sbjct: 881 SFVSIMSE 888



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 109/498 (21%), Positives = 202/498 (40%), Gaps = 59/498 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+     S +++    VLK ++ +    ++  Y  ++  L++ K   KA ++   
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL-- 520

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + I P +    +LL     +   DNA ++F+ M   G++     + V     C+ 
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 203 AKLGQVLS----------------MLDEVRKRENSMINGSVIAVLI-------------- 232
            +  +  S                ++D   K  N+    ++I  +I              
Sbjct: 581 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +H  CK KR+ EA  +LD++ +R  K    AY I+ +E    G     + +  +    G 
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI---GSVSSIDPR 347
            P    Y  FI     E R+ +A++L  ++   +  +  DV+  N LI   G +  ID  
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDL--ILKMEREGVAPDVVTYNILIDGCGHMGYID-- 756

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN----KSDELVEVYKVLSANDYFTDME-- 401
            A      M+     P   T   L K+L K N    +S +   ++ ++  +  +  +E  
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 402 ----------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                     +Y+ +++  C +GRL EA  ++  M  KGL P+   Y  L++ CC     
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 876

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A      M   G    L++Y +L+      G+ E    LF ++LE G   D   +  L
Sbjct: 877 EKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKIL 936

Query: 512 LEGLCQETNLQAAFEVFN 529
            +GL +   +   F++ +
Sbjct: 937 NDGLLKAGYVDICFQMLS 954



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 2/220 (0%)

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           ++L + + ++ +  VY  L  +    D  +YN M+   C  G L  A+   + +   GL+
Sbjct: 156 RSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE 215

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+    N+L+   CR   LR A  L+  M   GC  N  +Y ILI    +   +  AL L
Sbjct: 216 PETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVL 275

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  M   G +P+   +T L+ GLC+   +  A  +F+    + V+ +    +  ++   +
Sbjct: 276 FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSK 335

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            G    A K+   +  +  H D  ++  L+  L D +  E
Sbjct: 336 LGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEE 375


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 208/512 (40%), Gaps = 58/512 (11%)

Query: 60  LLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV---NKIT 116
           L+   S AL FFNWA +   FTH+  SY  +L+ L  +R +N   + L  +K      + 
Sbjct: 95  LIKTPSKALQFFNWAPEL-GFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVK 153

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           L+   +  +I S  +    Q++  VFN +K     + P +   NSLL +L   G  + A 
Sbjct: 154 LEDRFFNSLIRSYGKAGLFQESVQVFNSMK--SVGVSPSVVTFNSLLLILLKRGRTNMAQ 211

Query: 175 KMFDEM-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
            +FDEM S  GV   T  F + I  FC+N       SM+D                    
Sbjct: 212 SVFDEMLSTYGVTPDTYTFNILIRGFCKN-------SMVD-------------------- 244

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLG 291
                     E F+   E+   +C PD + Y  + +     G V     V+    K+   
Sbjct: 245 ----------EGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTN 294

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI- 350
           + P    Y   + G  ++  I EA  + E +VS     ++   N LI  +  +     I 
Sbjct: 295 LNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIK 354

Query: 351 -VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
            +F   +   G +P   TL+ L    C     ++ +EV++ +   +   D  +Y+V++  
Sbjct: 355 QIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRN 414

Query: 410 LCTSGRLREAYGVIQEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           LC  G    A  +  E+  K       G  P V+ Y S+ E  CR      A++++ Q+ 
Sbjct: 415 LCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLM 474

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G    L ++ ILI      G  E    L   ML +   PD  TY SL++GL Q+    
Sbjct: 475 KRGTQDPL-SFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPL 533

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            A++   K +    +   S   + +  L  +G
Sbjct: 534 VAYQTLEKMIKSSHVPETSTFHSILARLLAKG 565



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF   +   G  P   T + L +  CK +  DE    +K +S      D+ +YN +V  L
Sbjct: 213 VFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGL 272

Query: 411 CTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           C +G++  A+ V+  M +K   L+PDV  Y +L+   C +  +  A  ++++M + G   
Sbjct: 273 CRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKP 332

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEV 527
           N  TYN LI    EV +I+   ++F   L  G   PD  T  +L+   C   NL  A EV
Sbjct: 333 NEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEV 392

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           F K +  +V    +  S  + +LC+RG+F  A +L   LS
Sbjct: 393 FEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELS 432



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKG---LDPDVSFYNSLMEACCREDLLRPAKKL 457
           +SY +M+  L  +  L  A   +  +KR+    +  +  F+NSL+ +  +  L + + ++
Sbjct: 119 QSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQV 178

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
           ++ M + G S ++ T+N L+    + G    A  +F  ML   GV PD  T+  L+ G C
Sbjct: 179 FNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFC 238

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
           + + +   F  F +             +T +  LCR G   +A  ++ G+     + +  
Sbjct: 239 KNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPD 298

Query: 577 VILLKSL 583
           V+   +L
Sbjct: 299 VVTYTTL 305



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 70/395 (17%), Positives = 157/395 (39%), Gaps = 48/395 (12%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N     ++Y ++++   +  +I+    V +++    +  +   Y  +I  L + +   K 
Sbjct: 294 NLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKI 353

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             +F E         P+ C  N+L+    + G +++AL++F++M    V   +  + V I
Sbjct: 354 KQIF-EGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLI 412

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG-----FCKGKRVEEAFKVLDE 251
              C+     +   + DE+ ++E  + +     ++  +       C+  +  +A +V  +
Sbjct: 413 RNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQ 472

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFERE---VVLKKKRKLGVAPRTNDYREFILGLIV 308
           L  R  + D ++++I+ +     G+ FE     +VL  +R     P    Y+  I GL+ 
Sbjct: 473 LMKRGTQ-DPLSFKILIKGHCREGT-FEAGYELLVLMLRRDF--VPDLETYQSLIDGLLQ 528

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
           +     A +  E ++      +    ++++  + +         F  ++ +G++     L
Sbjct: 529 KGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAKGCAHESARFIMLMLEGKIRQNINL 588

Query: 369 SNLS-KNLCKRNKSDELVEVYKVLSANDYFTDME------SYN----------------- 404
           S  + + L      D+  ++  +L AN Y  DME      S+N                 
Sbjct: 589 STHTVRLLFGSGLRDKAFKIVGLLYANGYVVDMEELIGFLSHNRKFLLAHKLLLFCLEKH 648

Query: 405 ---------VMVSFLCTSGRLREAYGVIQEMKRKG 430
                     ++  LC   R  EA+G+  E+  KG
Sbjct: 649 QNVDIDMCDTVIEGLCKMKRHSEAFGLYYELVEKG 683


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 12/399 (3%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A ++ +EM + G+  +   +G+ I   C+N +  +  ++L+E+   E    N  + A 
Sbjct: 435 DGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAP 493

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LII G  K   +  A + L+++      PD   Y  + +    +G + E E    + +K 
Sbjct: 494 LII-GHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKR 552

Query: 291 GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
           G+ P    Y   I G      + +A +L  +++ SG     D   + L G   S D    
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKV 612

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M+  G  P       + +NL +    +    V   +  N    D+  Y+ ++S 
Sbjct: 613 SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 672

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC    + +A G++ EM ++GL+P +  YN+L++  CR   +  A+ ++D + A G   N
Sbjct: 673 LCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPN 732

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF---- 525
             TY  LI    + G+I  A  L+  ML++G+APDA  Y  L  G     +L+ A     
Sbjct: 733 CVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTE 792

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           E+FN+   +      S+ +T +   C+RG      KLL 
Sbjct: 793 EMFNRGYAN-----VSLFNTLVHGFCKRGKLQETEKLLH 826



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 210/470 (44%), Gaps = 7/470 (1%)

Query: 71  FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
           F +  +  ++  SP   +Y +++  L    ++    ++L ++  + +  +  VY  ++  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
            ++   T +AF +  E+          + ++L+  L   G +  A K+  EM   G+   
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFK 247
           T  +   +    +         +L+E+R   NS I  +V +  ++I+G C+    +EA  
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMR---NSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +L+E+     KP+   Y  +       G++      L+K  K  V P    Y   I GL 
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLS 534

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
              R+ EA+E    +       D+   + LI G   + +   A      M+  G  P   
Sbjct: 535 TVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNAD 594

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L +   K N  +++  + + +  +    D   Y +++  L  S  +  A+ V+ E+
Sbjct: 595 TYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEV 654

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           ++ GL PD+  Y+SL+   C+   +  A  L D+M   G    +  YN LI  F   G+I
Sbjct: 655 EKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDI 714

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             A  +F ++L KG+ P+  TYT+L++G C+  ++  AF+++ + ++  +
Sbjct: 715 SRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGI 764



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 173/429 (40%), Gaps = 38/429 (8%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A K+F+EM  R    + + + V I   C +  + +     +E+   +  +   +    
Sbjct: 260 DAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV--DYGLSPDAFTYG 317

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +++G CKG R++EA  +LDE+     KP+ + Y  + + F   G   E   +LK+    
Sbjct: 318 ALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISA 377

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV P    Y   I GL    ++  A +L + ++      D    N L+ G     D   A
Sbjct: 378 GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGA 437

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL------------------------- 384
               N M   G +P + +   +   LC+  +S E                          
Sbjct: 438 FELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 497

Query: 385 ----------VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                      E  + ++  +   D+  YN ++  L T GR+ EA     +++++GL PD
Sbjct: 498 HSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPD 557

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              Y+ L+   C+   L  A +L  QM  SG   N  TY  L+  + +  + E    +  
Sbjct: 558 EFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQ 617

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +ML  G  PD   Y  ++  L +  N++ AF V  +   + ++    I S+ +  LC+  
Sbjct: 618 SMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIA 677

Query: 555 HFLVATKLL 563
               A  LL
Sbjct: 678 DMEKAVGLL 686



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 5/203 (2%)

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
            FM   G +P + T S   +  CK    D   +V++ +   D   +  +YNVM+S LC S
Sbjct: 232 GFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRS 291

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G + EA+G  +EM   GL PD   Y +LM   C+   L+ AK L D+M  SG   N+  Y
Sbjct: 292 GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVY 351

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             L+  F + G+   A  +   M+  GV P+   Y +L+ GLC+   L  A ++  + + 
Sbjct: 352 GTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411

Query: 534 HDVMLARSILSTFMISLCRRGHF 556
             +        TF  +   +GHF
Sbjct: 412 VGLR-----PDTFTYNPLMQGHF 429



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 3/314 (0%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y  FI      R    AK++ E +      +++   N +I G   S     A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
             F   M++ G  P   T   L   LCK ++  E   +   +S +    ++  Y  +V  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G+  EA+ +++EM   G+ P+   Y++L+   C+   L  A KL  +M   G   +
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TYN L+    +  + +GA  L + M   G+ P+  +Y  ++ GLCQ    + A  +  
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           + ++  +     + +  +I   + G+  +A + L  ++    H D   +  L+K L+   
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVG 537

Query: 588 EVEMAIEHIKWIQE 601
            +E A E+   +Q+
Sbjct: 538 RMEEAEEYYAQVQK 551



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/495 (22%), Positives = 211/495 (42%), Gaps = 31/495 (6%)

Query: 38  LHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT-----------HSPLS 86
           + QLG    L   ++   + P   T++ L  G F    +   F             +  S
Sbjct: 396 IGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYS 455

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           Y  ++  L  + +     ++L+++    +  ++    F+   LI G + +   S+  E  
Sbjct: 456 YGIMINGLCQNGESKEAGNLLEEMISEGLKPNA----FMYAPLIIGHSKEGNISLACEAL 511

Query: 146 -KFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K    ++ P++ C NSL+  L++ G ++ A + + ++  RG+      +   I  +C+ 
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             L +   +L   R+  NS +  +      ++ G+ K    E+   +L  +     KPD 
Sbjct: 572 GNLEKADQLL---RQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDN 628

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AKELGE 320
             Y IV        ++    +VL +  K G+ P  + Y   I GL    +I +  K +G 
Sbjct: 629 HIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC---KIADMEKAVGL 685

Query: 321 VIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           +    K  ++  ++  NALI G   S D   A   F+ ++ KG VP   T + L    CK
Sbjct: 686 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCK 745

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                +  ++YK +       D   YNV+ +    +  L +A  + +EM  +G   +VS 
Sbjct: 746 NGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-ANVSL 804

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L+   C+   L+  +KL   M       N +T   ++S+F + G++  A R+F  + 
Sbjct: 805 FNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ 864

Query: 498 EKGVAPDATTYTSLL 512
           +K  +  AT   SLL
Sbjct: 865 QKKASQSATDRFSLL 879



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 95/218 (43%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+A      M + G  PT    + L K+L + +  + L ++   +       D+ +Y+  
Sbjct: 190 RNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTF 249

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C +     A  V +EM+R+    +   YN ++   CR   +  A    ++M   G 
Sbjct: 250 IEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGL 309

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S +  TY  L++   +   ++ A  L   M   G+ P+   Y +L++G  +E     AF+
Sbjct: 310 SPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFD 369

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +  + ++  V   + +    +  LC+ G    A+KLL+
Sbjct: 370 ILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLK 407



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 25/261 (9%)

Query: 332 DVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE------ 383
           D +++LI  G   S+ P+  + FF +   +   P+    + L+ +LC  +   +      
Sbjct: 80  DAVSSLIFGGRSHSLHPKLLLDFFYWSRPRIAPPSADAFARLAASLCAASLFPQANGLLH 139

Query: 384 ------------LVEVYKVLSANDYFTDMES-----YNVMVSFLCTSGRLREAYGVIQEM 426
                       L  + + +   D+ +   S      +V+V     +G +R A  V+  M
Sbjct: 140 QMILAHPHPPLVLASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMM 199

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              GL P     N L++   R D +    KL   M  +G   ++ TY+  I    +  + 
Sbjct: 200 ADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDF 259

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A ++F  M  +  A +  TY  ++ GLC+   ++ AF    + V++ +          
Sbjct: 260 DAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGAL 319

Query: 547 MISLCRRGHFLVATKLLRGLS 567
           M  LC+      A  LL  +S
Sbjct: 320 MNGLCKGSRLKEAKALLDEMS 340


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 187/398 (46%), Gaps = 14/398 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           NS+LA LA    +    +++  M     V    + +G+ +   C+  ++G  L +LD + 
Sbjct: 140 NSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMS 199

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL--RIRECKPDFIAYRIVAEEFKLM 274
           +++  +    V    ++ G CK  RV+EA   +++    +  C P+ + Y  + + F  +
Sbjct: 200 RQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRV 259

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTID 330
           G++     +++K    GV          + GL    R   A    +E   V   GK   +
Sbjct: 260 GNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--N 317

Query: 331 DDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               + L+G++  + +   A+  F+  + +G  P       +   L +  + ++   +  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +    +  D ++YN++++  C   RL EAY ++QEMK  G+ PDV  YN+L+   C+  
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
                 +L  +M   GC  ++ T+  L+  + +VG+I+ ALR+  +M E G+ P+   Y 
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497

Query: 510 SLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
           +L++ LC+  ++  A E+F+    KSV  +V    ++L
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 178/440 (40%), Gaps = 12/440 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            +++SIL +L+  R +  +  +   ++    +  D   Y  ++  L +      A  V +
Sbjct: 137 FAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLD 196

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKF 199
            +     DI P++   N+++  L   G +  AL   ++   S  G   +T+ +   I  F
Sbjct: 197 GMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI--RE 256
           C   ++G +    + V K EN  +  +++ +  I+ G C+  R   A +   E R    E
Sbjct: 257 C---RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPE 313

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            K + + Y  +        +V     +  +K   G +P    Y   I GL    R+ +A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +   +    F +D    N LI G         A      M E G  P + T + L    
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK      + E+   +  +     + ++  +V   C  G++ EA  +++ M   G+ P+ 
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L++  C+   +  A +L+D+M       N+ T+N L+    +    E A  L   
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           M E+   PD  T   L+E L
Sbjct: 554 MREERCFPDYVTVDVLMEWL 573


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 234/508 (46%), Gaps = 33/508 (6%)

Query: 39  HQLGLRDSLSPSLVARVINPYLLT-----HHSLALGFFNWASQQPNFTHSPLSYHSILKS 93
           H    R   S +L  R  N  LL      H S ALGFF  +  +PN +    S++ +L+ 
Sbjct: 84  HWAATRPGFSHTLFTR--NSLLLALVRGGHLSDALGFFQSSISEPNVS----SFNILLRG 137

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDI 152
            +       ++++L+++K   IT + + +  I+ +L   ++  KA S FN V  N CE  
Sbjct: 138 FAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCE-- 195

Query: 153 GPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P +    + V  L     ++ A  +F+EM  +G +   I +   I      +K G+V  
Sbjct: 196 -PTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGL---SKAGRV-- 249

Query: 211 MLDEVRKRENSMIN-----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
             DE RK  + M+       +V    I+ G CK  R++EA K + E+R R  +P    Y 
Sbjct: 250 --DEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYS 307

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   +  MG V +   V+++      AP T  Y  FI  L    R  EA+++ E +V  
Sbjct: 308 FIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEK 367

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDEL 384
               D      +I +       +A      +++K  V P     + +     K ++ +E 
Sbjct: 368 GCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEA 427

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLM 442
           +E+Y+ +  +       +YN +++ LC   ++ EA  +++EM+R+   L+P +  Y+ ++
Sbjct: 428 LELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII 487

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
               +  +   A  L  +M  +G   +  TY  LI   +  G++  A+ L   ML+ G+ 
Sbjct: 488 HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 547

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNK 530
           PD  TY +L++ LC+ +++ AA+++  +
Sbjct: 548 PDDHTYGTLVQILCR-SDVDAAWDLLQE 574



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 121/541 (22%), Positives = 211/541 (39%), Gaps = 96/541 (17%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSL----SLSRQINAIDSVLKQVKVNKITLDSSVY 122
           ALGF++WA+ +P F+H+  + +S+L +L     LS  +    S + +  V+   +     
Sbjct: 79  ALGFYHWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISEPNVSSFNI----- 133

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
                 L++G   +  F               E+ N+LL                 EM  
Sbjct: 134 ------LLRGFAARDDF---------------EVVNALLR----------------EMKS 156

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV--RKRENSMINGSVIAVLIIHGFCKGK 240
           RG+  +    GV +   C    L + +S  + V   K E ++   +V+    + G CK  
Sbjct: 157 RGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVL----VDGLCKAH 212

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +VE A  V +E+  +  KPD IAY  + +     G V E   ++      G  P    Y 
Sbjct: 213 KVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYT 272

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             + GL    RI E                                  A+     M  + 
Sbjct: 273 SIVAGLCKCGRIQE----------------------------------AVKTIQEMRRRR 298

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T S +        K ++   V + ++  D   D  SY + +  L + GR  EA 
Sbjct: 299 LRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAE 358

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V + M  KG  PD+  Y  +++  C+E  +  A  +   M  +    N   Y +++  F
Sbjct: 359 KVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGF 418

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +   +E AL L+  +L+ G+ P   TY +++  LC+   +  A E+  +       L  
Sbjct: 419 VKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEP 478

Query: 541 SILSTFMI-------SLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
           SI++  MI        +  R   L+A  +  G+  D     ++  L+++LA A +V  A+
Sbjct: 479 SIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCF---TYTSLIQTLAGAGKVSRAM 535

Query: 594 E 594
           E
Sbjct: 536 E 536



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  MI KG  P +   S+L   L K  + DE  ++  ++ A        +Y  +V+ LC 
Sbjct: 221 FEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCK 280

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            GR++EA   IQEM+R+ L P V  Y+ ++        +  A  + ++M    C+ +  +
Sbjct: 281 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTIS 340

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y + I     +G  E A ++F  M+EKG  PD  TY  +++  C+E ++ AA  V     
Sbjct: 341 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 400

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVE 590
              V   R I +  M    +      A +L + +  D  L  + ++  ++ +L   ++++
Sbjct: 401 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMD 460

Query: 591 MAIEHIKWIQ 600
            A+E ++ +Q
Sbjct: 461 EALELLREMQ 470


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 218/503 (43%), Gaps = 34/503 (6%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           +DS LK+ + ++ ++           L++   TQ      N+V FN           +++
Sbjct: 244 LDSFLKEGRKDEASM-----------LLKEMETQGGGFSLNDVTFNV----------VIS 282

Query: 163 VLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            LA +G+++NA+K+ D M  S +   F+   +   I    E   + +  ++  E+   EN
Sbjct: 283 FLAREGHLENAVKLVDSMRLSKKASSFT---YNPLITALLERGFVRKAEALQMEM---EN 336

Query: 221 SMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             I  +V+    IIHG  K ++ E A     E+R     PD I Y  +   +   G++ E
Sbjct: 337 EGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKE 396

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L   R+ G+AP    Y   I G      + EA+ L E +V      D      L+ 
Sbjct: 397 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           GS    +   A  FF+ M+ KG  P     +         + +    ++ +V+     + 
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYP 516

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +YNV++  LC +G L++A  +  +M   GL PD   Y  L+ A C   LLR A+KL 
Sbjct: 517 DTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLL 576

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           + M + G   ++ TY IL+      G +  A   F  ML+ G+ P+  TY  L+  LC  
Sbjct: 577 NGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMT 636

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SH 576
                AF  F++ +   +   +   +  +   CR G++  A +L   +  +    D  +H
Sbjct: 637 GRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTH 696

Query: 577 VILLKSLADAREVEMAIEHIKWI 599
             L K   D   +  AIE+++ I
Sbjct: 697 NALFKGF-DEGHMYHAIEYMENI 718



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 171/425 (40%), Gaps = 39/425 (9%)

Query: 148 NCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            C  + P++  CN +L VL      D+   ++ EM    VE + + +   +  F +  + 
Sbjct: 194 TCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRK 253

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L E+  +        V   ++I    +   +E A K++D +R+ + K     Y 
Sbjct: 254 DEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK-KASSFTYN 312

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +       G V + E +  +    G+ P    Y   I GL+     CE  E        
Sbjct: 313 PLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLK----CEQAE-------- 360

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                 +A V F  M   G +P + T ++L    CK     E +
Sbjct: 361 ----------------------AAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEAL 398

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +   L        + +YN ++   C  G L EA  + +EM  +G  PDV  Y  LM   
Sbjct: 399 WLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGS 458

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +   L  A++ +D+M + G   +   YN  I     +     A +L   M+ KG+ PD 
Sbjct: 459 RKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDT 518

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLR 564
            TY  +++GLC+  NL+ A  +  K V+ D +    I  T +I + C RG    A KLL 
Sbjct: 519 VTYNVIIDGLCKTGNLKDAKRLKTKMVS-DGLQPDCITYTCLIHAHCERGLLREARKLLN 577

Query: 565 GLSSD 569
           G+ SD
Sbjct: 578 GMVSD 582



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 202/467 (43%), Gaps = 21/467 (4%)

Query: 75  SQQPNFTHSPLSYHSILKSLS----LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           +Q   F+ + ++++ ++  L+    L   +  +DS+    K +  T     Y  +I +L+
Sbjct: 265 TQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFT-----YNPLITALL 319

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           +    +KA ++  +++   E I P +   N+++  L      + A   F EM   G+   
Sbjct: 320 ERGFVRKAEAL--QMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPD 377

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFK 247
            I +   + ++C+   L + L +L ++R+   + +  +V+    +I G+C+   + EA +
Sbjct: 378 VITYNSLLNRYCKAGNLKEALWLLGDLRR---AGLAPTVLTYNTLIDGYCRLGDLAEARR 434

Query: 248 VLDELRIRECKPDFIAYRIVAE-EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           + +E+  + C PD   Y I+     K+      RE   +   K G+ P    Y   I   
Sbjct: 435 LKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSK-GLQPDCFAYNTRICAE 493

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           +       A +L EV++      D    N +I G   + + + A      M+  G  P  
Sbjct: 494 LTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDC 553

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L    C+R    E  ++   + ++     + +Y ++V   C  G L  AYG  ++
Sbjct: 554 ITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRK 613

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G++P+   YN L+ A C       A + + +M   G + N  TY +LI      G 
Sbjct: 614 MLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGN 673

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
              A+RL+  M + G+ PD  T+ +L +G   E ++  A E     V
Sbjct: 674 WADAIRLYFEMHQNGIPPDYCTHNALFKGF-DEGHMYHAIEYMENIV 719


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 184/407 (45%), Gaps = 7/407 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           ++  +A+ G +D A+   D +   G + + + +   I  F    KL + + +L+E+R+R 
Sbjct: 31  IITAMANAGDLDGAM---DHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER- 86

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                  V   +++   CK   V  A  V+ ++      P+ + +  + + F   G+V +
Sbjct: 87  -GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 145

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +L      G+ P    Y   I GL   ++  EAKE+ E + +   T D    +ALI 
Sbjct: 146 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIH 205

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +   D    A      M   G  P +   S++    CK  K  E  +  + +       
Sbjct: 206 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 265

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKL 457
           D+ +YN ++  LC  G++ EA  ++ +M+  G + PDV  Y++++   C+ D+L  A+KL
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M  +GC+ ++ TY  +I    + G +E A  L   M   G AP+  TYT+L+ GLC+
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              +  A  V  +  N          +T +  LC  G    A +L++
Sbjct: 386 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 432



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 45/379 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+      G +D+A K+   M  +G+  + + +   I   C++ K  +   +L+E++ 
Sbjct: 131 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKA 190

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + +   +     +IHG CK  ++EEA ++L  +    C PD + Y  +   F   G +
Sbjct: 191 --SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E +  L++ RK   +P    Y   I GL    +I EA+                     
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ--------------------- 287

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLS---A 393
                        V  + M E G V P + T S +   LCK   SD LVE  K+L     
Sbjct: 288 -------------VILDQMQESGDVLPDVVTYSTVINGLCK---SDMLVEAQKLLDRMCK 331

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+ +Y  ++  LC  GRL EA  ++Q MKR G  P+V  Y +L+   C+   +  
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 391

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE--KGVAPDATTYTSL 511
           A+++ ++M  +GC  NL TYN +++     G I+ A +L   M +     +PDA TY ++
Sbjct: 392 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 451

Query: 512 LEGLCQETNLQAAFEVFNK 530
           +  L     +Q A ++  +
Sbjct: 452 VNALMSSDLVQEAEQLLEQ 470



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 189/405 (46%), Gaps = 20/405 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +L+A  A    ++ A+K+ +EM  RG   + + + V +   C   KL  V +  D V+K
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC---KLSMVGAAQDVVKK 117

Query: 218 RENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               MI G     +     ++ GFCK   V++A K+L  +  +  +P+ + Y  + +   
Sbjct: 118 ----MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 173

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
                 E + VL++ +  GV P    Y   I GL    +I EA+++   +     T D  
Sbjct: 174 KSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVV 233

Query: 333 VLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK-SDELVEVYKV 390
           V +++I +   S     A      M ++ + P + T + +   LCK  K ++  V + ++
Sbjct: 234 VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQM 293

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
             + D   D+ +Y+ +++ LC S  L EA  ++  M + G +PDV  Y ++++  C+   
Sbjct: 294 QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGR 353

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A+ L   M  +GC+ N+ TY  LIS   +  +++ A R+   M   G  P+  TY +
Sbjct: 354 LEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNT 413

Query: 511 LLEGLCQETNLQAAFEVFNK------SVNHDVMLARSILSTFMIS 549
           ++ GLC    ++ A ++  +        + D    R+I++  M S
Sbjct: 414 MVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 458



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 153/329 (46%), Gaps = 5/329 (1%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C    +  A ++L+E++     PD   +  +      M +  + +  +   R +G  P  
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPI---ITAMANAGDLDGAMDHLRSMGCDPNV 57

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNF 355
             Y   I      +++ EA +L E +       +    N L+ ++  +    A       
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MIE G  P + T ++L    CKR   D+  ++  ++ A     ++ +Y+ ++  LC S +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             EA  V++EMK  G+ PD   Y++L+   C+ D +  A+++  +M  SGC+ ++  Y+ 
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVNH 534
           +I  F + G++  A +    M ++  +PD  TY ++++GLC+   +  A  + ++   + 
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLL 563
           DV+      ST +  LC+    + A KLL
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLL 326



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  +++    + +L EA  +++EM+ +G  P++  YN L++A C+  ++  A+ +  +M
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G + N+ T+N L+  F + G ++ A +L   M+ KG+ P+  TY++L++GLC+    
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             A EV  +     V       S  +  LC+      A ++LR ++ 
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG 225



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/430 (20%), Positives = 151/430 (35%), Gaps = 144/430 (33%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           LG       +PN     ++Y +++  L  S++      VL+++K + +T D+  Y  +I 
Sbjct: 150 LGIMVAKGMRPNV----VTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIH 205

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            L +                                      I+ A +M   M+  G   
Sbjct: 206 GLCKADK-----------------------------------IEEAEQMLRRMAGSGCTP 230

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMING-------------- 225
             + +   I  FC++ KL +    L E+RK+         N++I+G              
Sbjct: 231 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 290

Query: 226 ------------SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
                        V    +I+G CK   + EA K+LD +    C PD + Y  + +    
Sbjct: 291 DQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCK 350

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G + E E +L+  ++ G AP    Y   I GL   R++ EA+ + E           ++
Sbjct: 351 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVME-----------EM 399

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
            NA                       G  P L T + +   LC                 
Sbjct: 400 RNA-----------------------GCPPNLVTYNTMVNGLC----------------- 419

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK--RKGLDPDVSFYNSLMEACCREDLL 451
                              SGR++EA  ++Q MK  R    PD + Y +++ A    DL+
Sbjct: 420 ------------------VSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLV 461

Query: 452 RPAKKLWDQM 461
           + A++L +QM
Sbjct: 462 QEAEQLLEQM 471


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 192/458 (41%), Gaps = 55/458 (12%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  ++ V    G   +  ++F  M   G   + + +  +I   C+ A + Q   +L+E+ 
Sbjct: 223 CTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMV 282

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKV-LDELRIRECKPDFIAYRIVAEEFKLMG 275
            +   +         +I+G CK    E AF++ L  ++    KP+   Y ++   +   G
Sbjct: 283 AK--GLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEG 340

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E++L +  + G+AP TN Y   I G   E               G F        
Sbjct: 341 KLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKE---------------GSFNC------ 379

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        A    N M  +G  P + T + L   LCK+ K  E  +V ++ +   
Sbjct: 380 -------------AFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQG 426

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y VM++  C  G +  A  +   M   G  PD+  Y +L+   C++  +  ++
Sbjct: 427 LQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQ 486

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL+D+  A       +TY  +I+ + +VG+   ALR+F  M++ G   D+ TY +L+ GL
Sbjct: 487 KLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGL 546

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-------- 567
           C+E+ L+ A  ++   ++  ++       T     CRR   +VA  +L  L         
Sbjct: 547 CKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTV 606

Query: 568 -------SDLGHSDSHVILLKSLADAREVEMAIEHIKW 598
                  S +GH +   + LK   D   V++A++ + +
Sbjct: 607 NVLVRKLSAIGHVEDASLFLKKALD---VDLAVDRLAY 641



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 103/250 (41%), Gaps = 36/250 (14%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF   +   G +P   +   L    C+  + +E+  +  V+    +  D  +  V+V   
Sbjct: 171 VFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVF 230

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  GR R+   + + M   G  P+V  Y + ++  C+   ++ A  + ++M A G   N+
Sbjct: 231 CQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNV 290

Query: 471 KTYNILISKFSEVGEIEGALRLF------------------------------------H 494
            T+  LI+   ++G  E A RLF                                     
Sbjct: 291 YTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLG 350

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M+E+G+AP+  TYT+L+ G C+E +   AFE+ NK             +  +  LC++G
Sbjct: 351 RMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKG 410

Query: 555 HFLVATKLLR 564
               A K+LR
Sbjct: 411 KIQEAYKVLR 420



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 87/227 (38%), Gaps = 45/227 (19%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTD-------MESYNVMVSFLCTSGRLREAYGVI 423
           L + L  R     L+ +Y  ++A   F D        E+   MV+    +GRL EA  ++
Sbjct: 80  LFRRLASRQDVRHLMRLY--VTAATTFVDRGSLPMAHEAMRRMVAAFAEAGRLPEAADMV 137

Query: 424 QEMK---------------RKGLD---------------------PDVSFYNSLMEACCR 447
            EM+               R GLD                     PD   + +L+  CCR
Sbjct: 138 FEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCR 197

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           +  +     L   M   G   +  T  +++  F + G       LF  MLE G  P+   
Sbjct: 198 DGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVN 257

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           YT+ ++GLC+   ++ AF V  + V   +       ++ +  LC+ G
Sbjct: 258 YTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIG 304


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 120/528 (22%), Positives = 226/528 (42%), Gaps = 9/528 (1%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  +  L LR SL PS V  V+         +AL FF WA +Q  + H P+ Y+S
Sbjct: 157 WNPKHEGQMRNL-LR-SLKPSQVCAVLRSQ--DDERVALKFFYWADRQWRYRHDPMVYYS 212

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL  +K   I      +  ++ S  +    + A  V   ++   
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + V      ++ AL+  + M   G+  + + +   I  +C+  ++ + +
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVA 268
            +L+++  +    +   V    I+   CK KR+ E   ++ ++ +     PD + Y  + 
Sbjct: 333 ELLEDMHSK--GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
                     E    LK  ++ G       Y   +  L  E R+ EAK+L  E++  G  
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHC 450

Query: 328 TIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D     A++     + +   A      M   G  P   + + L   +C+  KS E  E
Sbjct: 451 PPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEARE 510

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           +  +   + +  +  +Y+V++  L   G+L EA  V++EM  KG  P     N L+++ C
Sbjct: 511 MMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLC 570

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           R+     A+K  ++    GC+ N+  +  +I  F +  E++ AL +  +M       D  
Sbjct: 571 RDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVF 630

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           TYT+L++ L ++  +  A E+  K ++  +        T +   C+ G
Sbjct: 631 TYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMG 678



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 180/417 (43%), Gaps = 22/417 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ +L    + D AL    +   +G     +G+   +   C+  ++ +   +++E+  
Sbjct: 387 NTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLS 446

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           + +   +  V    +++GFC+   V++A K+L  +     KP+ ++Y  +       G  
Sbjct: 447 KGHCPPD-VVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKS 505

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +   +P +  Y   + GL  E ++ EA ++   +V   F      +N L
Sbjct: 506 LEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 565

Query: 338 IGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           + S+   D R+  A  F    + KG    +   + +    C+ ++ D  + V   +   +
Sbjct: 566 LQSLCR-DGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 624

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y  +V  L   GR+ EA  ++++M  KG+DP    Y +++   C+   +    
Sbjct: 625 KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLV 684

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            + ++M +      +  YN +I K   +G++E A  L   +L      DA T  +L+EG 
Sbjct: 685 AILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGY 742

Query: 516 CQETNLQAAFEV----FNKSVNHDVMLARSI------------LSTFMISLCRRGHF 556
            ++    +A++V    FN+++  DV +   +                M+ L  RGH 
Sbjct: 743 LKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHI 799



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 178/436 (40%), Gaps = 31/436 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  L+     +     LK  +     +D   Y  I+ +L +     +A  + NE
Sbjct: 384 VTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINE 443

Query: 145 V--KFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +  K +C    P++      V      G +D A K+   M   G + +T+ +   +   C
Sbjct: 444 MLSKGHCP---PDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMC 500

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              K  +   M++     E+     S+   +I+HG  +  ++ EA  V+ E+ ++   P 
Sbjct: 501 RTGKSLEAREMMN--MSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPG 558

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            +   ++ +     G   E    +++    G A    ++   I G       C+  EL  
Sbjct: 559 PVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGF------CQNDELDA 612

Query: 321 V--IVSGKFTIDD--DV-----LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
              ++   + I+   DV     L   +G    I    A      M+ KG  PT  T   +
Sbjct: 613 ALSVLDDMYLINKHADVFTYTTLVDTLGKKGRI--AEATELMKKMLHKGIDPTPVTYRTV 670

Query: 372 SKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
               C+  K D+LV +  K++S     T    YN ++  LC  G+L EA  ++ ++ R  
Sbjct: 671 IHRYCQMGKVDDLVAILEKMISRQKCRT---IYNQVIEKLCVLGKLEEADTLLGKVLRTA 727

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
              D     +LME   ++ +   A K+  +MF      ++K    L  +    G+++ A 
Sbjct: 728 SRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEAD 787

Query: 491 RLFHNMLEKG-VAPDA 505
           +L   ++E+G ++P +
Sbjct: 788 KLMLRLVERGHISPQS 803



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 102/259 (39%), Gaps = 20/259 (7%)

Query: 324 SGKFTIDDDV--------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           +G+F +++D         +  LIG  SS +P+      N          L +L       
Sbjct: 129 AGRFDVEEDESRHPLVREVGRLIGLRSSWNPKHEGQMRNL---------LRSLKPSQVCA 179

Query: 376 CKRNKSDELVEV---YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             R++ DE V +   Y       Y  D   Y  M+  L  +   + +  V+  MKR+G+ 
Sbjct: 180 VLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIY 239

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
                ++ +M +  R   LR A K+   M  +G   NL   N  I  F     +E ALR 
Sbjct: 240 RTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRF 299

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   G+ P+  TY  ++ G C    ++ A E+     +   +  +    T M  LC+
Sbjct: 300 LERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCK 359

Query: 553 RGHFLVATKLLRGLSSDLG 571
               +    L++ ++ + G
Sbjct: 360 EKRIVEVRDLMKKMAKEHG 378


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 186/427 (43%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D AL  F+ M H+    ST+ F   +    +      +LS+    R+ ++  I   V  
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL---SRQMDSFGIPPDVYT 107

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+  C   RV+ AF  L ++     +PD   +  +     + G + E   +  K  
Sbjct: 108 LAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI 167

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   I GL        A  L   +  G    +  V + LI S+       
Sbjct: 168 GEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ MI KG  P + T ++L   LCK  +   +  +   +  +    D+ + N +V
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G + EA+ V+  M  +G++P+V  YN+LM+  C  + +  A K++D M    C 
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  ++ A+ LF  M  + + P+  TY +L+ GLC    LQ A  +
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V    +       T    LC+  H   A  LL+ +       D  +   +L  +  
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 468 AGELEDA 474



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 208/463 (44%), Gaps = 17/463 (3%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            QP+ T    ++ ++++ L +  +I     +  ++       +   Y  +I  L +  NT
Sbjct: 136 HQPDAT----TFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 136 QKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             A  +   + + NC+   P +   ++L+  L  D  +  A  +F EM  +G+  + + +
Sbjct: 192 SAAIRLLRSMEQGNCQ---PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTY 248

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDE 251
              I   C+  +   V ++++E+    +S I   V  +  ++   CK   V EA  V+D 
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMV---DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R  +P+ + Y  + +   L   V     V               Y   I G    + 
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
           + +A  L E +   + T +    N LI  +  +   + AI  F+ M+ +G++P L T   
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           LS  LCK    D+ + + K +  +++  D++ Y  ++  +C +G L +A  +   +  KG
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P+V  YN ++   C++ LL  A KL+ +M  +GCS N  TYN++   F    E    +
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEVFNKSV 532
            L   ML +G + D +T T+LL G+  +  L Q+  ++  K V
Sbjct: 546 ELLEEMLARGFSVDVST-TTLLVGMLSDDGLDQSVKQILCKIV 587



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 205/467 (43%), Gaps = 8/467 (1%)

Query: 67  ALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           AL  FN    +QP    S + ++ +L S++ ++  + + S+ +Q+    I  D      +
Sbjct: 54  ALSTFNRMLHKQP--PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I SL        AFS   ++             +L+  L  +G I  AL +FD+M   G 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
           + + + +G  I   C   K+G   + +  +R  E      +V+    +I   CK ++V E
Sbjct: 172 QPNVVTYGTLINGLC---KVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           AF +  E+  +   P+ + Y  +      +        ++ +     + P        + 
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
            L  E  + EA ++ ++++      +    NAL+ G     +   A+  F+ M+ K  V 
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 348

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + + + L    CK    D+ + +++ +S  +   +  +YN ++  LC  GRL++A  + 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EM  +G  PD+  Y +L +  C+   L  A  L   +  S    +++ Y  ++      
Sbjct: 409 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 468

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           GE+E A  LF N+  KG+ P+  TY  ++ GLC++  L  A ++F++
Sbjct: 469 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSE 515


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 172/365 (47%), Gaps = 3/365 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K K    A  +  ++ ++  +PD +   I+   F  +G +     VL K  KLG
Sbjct: 138 ILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLG 197

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      + GL ++  + ++    + +V+  F ++      L+  +  I + R AI
Sbjct: 198 YQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAI 257

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                + ++   P +   + +   LCK    +E  + Y  +++   F D+ +Y+ ++   
Sbjct: 258 KLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGF 317

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C +G+L  A+ ++ EM  K ++PDV  Y  L++A C+E  L+ AK L   M   G   N+
Sbjct: 318 CLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNV 377

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  VGE+  A ++FH M++  V P   +Y  ++ GLC+  ++  A  +  +
Sbjct: 378 VTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLRE 437

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
            ++ +V+      ++ +  LC+ G    A  L++ L      +D  ++  LL  L   + 
Sbjct: 438 MLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQN 497

Query: 589 VEMAI 593
           ++ AI
Sbjct: 498 LDKAI 502



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 197/459 (42%), Gaps = 19/459 (4%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T S + +  IL SL   +      S+ KQ++V  I  D      +I           +FS
Sbjct: 129 TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFS 188

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V  ++          I  +L+  L   G +  +L   D++  +G + + + +G  +   C
Sbjct: 189 VLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLC 248

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K+G+    +  +R  E+      V+    II G CK K V EA+    E+  R   P
Sbjct: 249 ---KIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFP 305

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  +   F L G +     +L +     + P    Y   I  L  E ++ EAK L 
Sbjct: 306 DVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLL 365

Query: 320 EVIVSGKFTIDDDVLN--------ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            V+   K  +  +V+          L+G V      +A   F+ M++    P++ + + +
Sbjct: 366 GVMT--KEGVKPNVVTYSTLMDGYCLVGEV-----HNAKQIFHAMVQTEVNPSVCSYNIM 418

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK    DE + + + +   +   +  +YN ++  LC SGR+  A  +++E+  +G 
Sbjct: 419 INGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQ 478

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
             DV  Y SL++  C+   L  A  L+ +M   G   N  TY  LI    +   ++ A +
Sbjct: 479 PADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQK 538

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           LF ++L KG   D  TY  ++ GLC+E  L  A  + +K
Sbjct: 539 LFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSK 577



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 154/346 (44%), Gaps = 5/346 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++  L  D  ++ A   + EM+ RG+    I +   I  FC   +L    S+L+E+  
Sbjct: 276 NTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTL 335

Query: 218 RENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           +    IN  V    ++I   CK  +++EA  +L  +     KP+ + Y  + + + L+G 
Sbjct: 336 KN---INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V   + +     +  V P    Y   I GL   + + EA  L   ++      +    N+
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G   S    SA+     +  +G+   + T ++L   LCK    D+ + ++  +    
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERG 512

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +Y  ++  LC   RL+ A  + Q +  KG   DV  YN ++   C+E +L  A 
Sbjct: 513 IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEAL 572

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
            +  +M  +GC  +  T+ I+I    E  E + A +L H M+ KG+
Sbjct: 573 AMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 162/406 (39%), Gaps = 3/406 (0%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L  L    +   A+ +  +M  +G+E   +   + I  FC   ++    S+L ++ K  
Sbjct: 138 ILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLG 197

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                 ++I   ++ G C    V+++    D++  +  + + ++Y  +      +G    
Sbjct: 198 YQ--PNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRC 255

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L+        P    Y   I GL  ++ + EA +    + S     D    + LI 
Sbjct: 256 AIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLIC 315

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   +     A    N M  K   P + T + L   LCK  K  E   +  V++      
Sbjct: 316 GFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKP 375

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +Y+ ++   C  G +  A  +   M +  ++P V  YN ++   C+   +  A  L 
Sbjct: 376 NVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLL 435

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M       N  TYN LI    + G I  AL L   +  +G   D  TYTSLL+GLC+ 
Sbjct: 436 REMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKN 495

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            NL  A  +F K     +   +   +  +  LC+      A KL +
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQ 541



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 114/248 (45%), Gaps = 2/248 (0%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+  FN M+     P++     +  +L K       + + K +       D+ + +++
Sbjct: 114 HDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSIL 173

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C  G++  ++ V+ ++ + G  P+     +LM+  C +  ++ +    D++ A G 
Sbjct: 174 INCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF 233

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  +Y  L++   ++GE   A++L   + ++   PD   Y ++++GLC++  +  A++
Sbjct: 234 QMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYD 293

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
            + +  +  +       ST +   C  G  + A  LL  ++    + D  ++ IL+ +L 
Sbjct: 294 FYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALC 353

Query: 585 DAREVEMA 592
              +++ A
Sbjct: 354 KEGKLKEA 361


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 193/431 (44%), Gaps = 15/431 (3%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     S + F   +    +  +   VLS+    RK ++  I  +V  
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSL---SRKMDSFGIPHNVYT 111

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC   RV  AF VL ++    C+PD  ++  + +   L G + E   +  K  
Sbjct: 112 LNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMI 171

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
             G  P    Y   I GL        A  L   +  G    D  V   LI S+     ++
Sbjct: 172 WEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQT 231

Query: 349 -AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ MI KG  P + T ++L   LC   +   +  +   +  +    +  S   +V
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVV 291

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G + +A+ V+  M + G++PDV  Y +L++  C    +  A K++D M   GC+
Sbjct: 292 DALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCA 351

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  ++ A+ LF  M  + + P+  TY +L+ GLC    LQ A  +
Sbjct: 352 PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL 411

Query: 528 FNKSVN----HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLK 581
           F + V      D++  R +L      LC+  H   A  LL+ +       D  +  I++ 
Sbjct: 412 FREMVACGQIPDLVTYRILLD----YLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVID 467

Query: 582 SLADAREVEMA 592
            +  A E+E A
Sbjct: 468 GMCRAGELEDA 478



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 198/457 (43%), Gaps = 18/457 (3%)

Query: 82  HSPLS---YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           H P S   +  IL S++  ++ + + S+ +++    I  +      +I S         A
Sbjct: 69  HPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFA 128

Query: 139 FSVFNEV-KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           FSV  ++ K  C+   P+  +  +L+  L  +G I  AL +FD+M   G +   + +   
Sbjct: 129 FSVLAKILKLGCQ---PDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATL 185

Query: 196 IWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           I   C+       + +L  + K   + + ++ G+     +IH  CK ++  +AF +  E+
Sbjct: 186 INGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT-----LIHSLCKDRQQTQAFNLFSEM 240

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             +   P+ +    +      +G       +L +     + P        +  L  E  +
Sbjct: 241 ITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMV 300

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            +A ++ +++       D     ALI G     +   A+  F+ M+ KG  P + + + L
Sbjct: 301 AQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTL 360

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
               CK  + D+ + +++ +       +  +YN ++  LC  GRL++A  + +EM   G 
Sbjct: 361 INGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ 420

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PD+  Y  L++  C+   L  A  L   +  S    +++ Y I+I      GE+E A  
Sbjct: 421 IPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARD 480

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LF N+  KG+ P+  TY  +  GLC+   L  A ++F
Sbjct: 481 LFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLF 517


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 1/333 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I GFC    +++      E+    C P+ + Y  + + +  MG + E   +LK     
Sbjct: 15  ILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSK 74

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   I GL  E  + EA E+ E +    FT D+   N L+ G     +   A
Sbjct: 75  GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 134

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +V    M+  G  P++ T + L  ++CK    +  +E +  +       +  +Y  ++  
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G L EAY ++ EM   G  P V  YN+ +   C  + +  A  +  +M   G + +
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +Y+ +IS F   GE++ A ++   M+EKGV+PDA TY+SL++GLC+   L  A ++  
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 314

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           + ++  +       +T + + C  G    A  L
Sbjct: 315 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 347



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 9/353 (2%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           + + I  FC   +L + L    E+ +  N  +   V    +I  +CK  R++EAF +L  
Sbjct: 13  YNILIRGFCSVGELQKGLGCFGEMER--NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKS 70

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  +  +P+ I+Y ++       GS+ E   +L++    G  P    Y   + G   E  
Sbjct: 71  MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 130

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             +A  +   +V    +       ALI S+  + +   A+ FF+ M  +G  P   T + 
Sbjct: 131 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L     ++   +E   +   ++ + +   + +YN  +   C   R+ EA GV+QEM  KG
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L PDV  Y++++   CR+  L  A ++  +M   G S +  TY+ LI    E+  +  A 
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            L   ML+ G+ PD  TYT+L+   C E +L  A  +      HD M+ +  L
Sbjct: 311 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL------HDEMIHKGFL 357



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 176/410 (42%), Gaps = 4/410 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+    S G +   L  F EM   G   + + +   I  +C+  ++ +   +L  +  
Sbjct: 14  NILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   M    +   +II+G C+   ++EA+++L+E+  +   PD + Y  +   +   G+ 
Sbjct: 74  K--GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +  V+  +  + GV+P    Y   I  +   R +  A E  + +       ++     L
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I   S       A    N M E G  P++ T +      C   + +E + V + +     
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ SY+ ++S  C  G L  A+ + QEM  KG+ PD   Y+SL++  C    L  A  
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L  +M   G   +  TY  LI+ +   G++  AL L   M+ KG  PDA TY+ L+ GL 
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 371

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           ++   + A  +  K +  + + +     T +I  C    F     L++G 
Sbjct: 372 KQARTREAKRLLFKLIYEESVPSDVTYDT-LIENCSNIEFKSVVALIKGF 420



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/520 (21%), Positives = 202/520 (38%), Gaps = 84/520 (16%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           +++ +   Y  +I         QK    F E++ N         N+L+      G ID A
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMING 225
             +   MS +G++ + I + V I   C    + +   +L+E+  +         N+++NG
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124

Query: 226 S-------------------------VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
                                     V    +I+  CK + +  A +  D++RIR  +P+
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              Y  + + F   G + E   +L +  + G +P    Y  FI G  V  R+ EA     
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEA----- 239

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                            +G V              M+EKG  P + + S +    C++ +
Sbjct: 240 -----------------LGVVQE------------MVEKGLAPDVVSYSTIISGFCRKGE 270

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D   ++ + +       D  +Y+ ++  LC   RL EA  + QEM   GL PD   Y +
Sbjct: 271 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+ A C E  L  A  L D+M   G   +  TY++LI+  ++      A RL   ++ + 
Sbjct: 331 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEE 390

Query: 501 VAPDATTYTSLLE---------------GLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
             P   TY +L+E               G C +  +  A  VF   V  +     ++ + 
Sbjct: 391 SVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNV 450

Query: 546 FMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSL 583
            +   CR G+   A  L + +  S  + H+ + + L+K+L
Sbjct: 451 IIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 105/212 (49%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI     P + T + L +  C   +  + +  +  +  N    ++ +YN ++   C  GR
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA+G+++ M  KG+ P++  YN ++   CRE  ++ A ++ ++M   G + +  TYN 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++ + + G    AL +   M+  GV+P   TYT+L+  +C+  NL  A E F++     
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           +       +T +    R+G    A ++L  ++
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMT 212



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 197/477 (41%), Gaps = 33/477 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     +SY+ I+  L     +     +L+++     T D   Y  ++    +  N  
Sbjct: 77  QPNL----ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFH 132

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  +  E+  N   + P +    +L+  +     ++ A++ FD+M  RG+  +   +  
Sbjct: 133 QALVIHAEMVRN--GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELR 253
            I  F     L +   +L+E+ +   S  + SV+     IHG C  +R+EEA  V+ E+ 
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTE---SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 247

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRI 312
            +   PD ++Y  +   F   G + +R   +K++  + GV+P    Y   I GL   RR+
Sbjct: 248 EKGLAPDVVSYSTIISGFCRKGEL-DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRL 306

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA +L + ++      D+     LI +     D   A+   + MI KG +P   T S L
Sbjct: 307 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 366

Query: 372 SKNLCKRNKSDELVEV---------------YKVLSANDYFTDMESYNVMVSFLCTSGRL 416
              L K+ ++ E   +               Y  L  N    + +S   ++   C  G +
Sbjct: 367 INGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLM 426

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  V + M  +   P  + YN ++   CR   L  A  L+ +M  SG   +  T   L
Sbjct: 427 HEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITL 486

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV---FNK 530
           I    + G  E    +  + L      +A     L+E   +E N++A   V   +NK
Sbjct: 487 IKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVSRLYNK 543


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 123/521 (23%), Positives = 214/521 (41%), Gaps = 75/521 (14%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +Y+ ++  L  +R  +    VLK+++  K +  D   Y  +I    +     +A  +  E
Sbjct: 11  TYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILRE 70

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P++    S++  L  DG +D A +M  EM  +GVE     F   I  +C  
Sbjct: 71  MVTR-DGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNA 129

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE---CKP 259
            K+ + L +  E+    +S    +V +  +I G C+ +R+ EA+++  E+ +RE    KP
Sbjct: 130 RKVDEALKLYKEILT--SSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  + + F   G++ +   +L         P    Y   + GL      C+A +L 
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL------CKAGDLD 241

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +                            A+  F  M  KG VP + T + L   LC  +
Sbjct: 242 Q----------------------------ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 273

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K D    +   ++A     D  SYN ++   C  GR+ EA  + +EM  K   PD   Y 
Sbjct: 274 KVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYT 333

Query: 440 SLMEACCREDLLRPAKKLWDQM-FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
            L+   C    L  A+ L + M  A+G   ++ TY+I+++ +S       A      M+ 
Sbjct: 334 CLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIA 393

Query: 499 KGVAPDATTYTSL-------------------------------LEGLCQETNLQAAFEV 527
           + VAP+A TY+SL                               +EGLC     + A  +
Sbjct: 394 RNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTL 453

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             + VN  V  +    ++ + +LCR G    A KLL  +++
Sbjct: 454 LEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 494



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 213/497 (42%), Gaps = 22/497 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++ +++     +R+++    + K++  +   LD+     +I  L + +   +A+ +F E
Sbjct: 117 FTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQE 176

Query: 145 VKFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           ++   ED    P++    +L+      G ++ A+KM   M  R    + + +   +   C
Sbjct: 177 MEMR-EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLC 235

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +   L Q L +    R      +   V    +IHG C   +V+ A  ++DE+    C  D
Sbjct: 236 KAGDLDQALDLFR--RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPAD 293

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            ++Y  + + +  +G + E + + K+       P    Y   + G     R+ EA+ L E
Sbjct: 294 TVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLE 353

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
            + +      D V  +++ +  S   R   A  F   MI +   P   T S+L   LCK 
Sbjct: 354 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA 413

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + +  +EV K +   D  T    Y +++  LC + R  EA  +++EM  K ++P V  +
Sbjct: 414 GRVNHAMEVLKNVDKPDVVT----YTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTF 469

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           NS++ A CR   +  A KL   M A G    + TY  L+  FS  G +E A  LF  M  
Sbjct: 470 NSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529

Query: 499 KG--------VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           K         + P+   +++L+ GLC+   +  A  V  +  + +   A       +  L
Sbjct: 530 KAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGL 588

Query: 551 CRRGHFLVATKLLRGLS 567
            R G    A KL+  +S
Sbjct: 589 LRAGRTEEAGKLINSIS 605



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 154/408 (37%), Gaps = 54/408 (13%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           LG        PN     ++Y S+L  L  +  ++    + +++       +   Y  +I 
Sbjct: 212 LGVMEGRKCVPNV----VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIH 267

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            L        A  + +E+   C        N+LL      G I+ A ++F EM+ +    
Sbjct: 268 GLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLP 327

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAF 246
             I +   +  FC  ++L +   +L+ ++    + I+  V+   +++ G+ + KR  EA 
Sbjct: 328 DRITYTCLVRGFCNASRLEEARFLLENMKT--AAGIDPDVVTYSIVVAGYSRAKRFVEAA 385

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           + + E+  R   P+ + Y  + +     G V     VLK   K    P    Y   I GL
Sbjct: 386 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGL 441

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS------------------SIDP-- 346
               R  EA  L E +V+ +        N++IG++                    ++P  
Sbjct: 442 CGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501

Query: 347 --------------RSAIVFFNFMIEKGRVPTLSTLSNLS---------KNLCKRNKSDE 383
                         R  I +  F + + +    S+ +NL          + LCK  + D+
Sbjct: 502 VTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDK 561

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            + V + L + +     E    +V  L  +GR  EA  +I  + + GL
Sbjct: 562 AMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 189/428 (44%), Gaps = 19/428 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL  L  +  +  AL +F +M    V    + F   +   C   ++ + +++LD  R 
Sbjct: 54  NTLLHGLCVEDRVSEALDLFHQMCKPNV----VTFTTLMNGLCREGRVVEAVALLD--RM 107

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGS 276
            E+ +    +    I+ G CK      A  +L ++  +   KPD + Y  + +     G 
Sbjct: 108 VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGR 167

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             + + +  + +  G+ P    Y   I G     +  EA+ L + ++  K + D    + 
Sbjct: 168 HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSG 227

Query: 337 LIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-- 393
           LI + V   D  SA      MI  G  P + T + L   LC   K  + +E++K +    
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287

Query: 394 ---------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
                    N    D+++YN+++S L   G+  EA  + +EM  +G+ PD   Y+S++  
Sbjct: 288 MDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMING 347

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C++  L  A +++D M +   S N+ T+N LI+ + + G ++  L LF  M  +G+  +
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A TY +L+ G  +  N+  + ++F + ++  V      +   +  L  +     A  +L 
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLE 467

Query: 565 GLSSDLGH 572
            L   + H
Sbjct: 468 ELQMSMDH 475



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/490 (21%), Positives = 202/490 (41%), Gaps = 73/490 (14%)

Query: 57  NPYLLTHHSLALGFF--NWASQQPNFTH-----SPLSYHSILKSLSLSRQINAIDSVLKQ 109
           +P L+T ++L  G    +  S+  +  H     + +++ +++  L    ++    ++L +
Sbjct: 47  HPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDR 106

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASD 167
           +  + +  +   Y  I+  + +  +T  A ++  +++     I P++   ++++  L  D
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-ELSHIKPDVVIYSAIIDGLWKD 165

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G   +A  +F EM  +G+    + +   I  FC + K                       
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW---------------------- 203

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
                           EA ++L E+ +R+  PD + +  +       G +   + +L++ 
Sbjct: 204 ---------------SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              GV P        + GL      C++ +L + +         ++  A+  S+  ID  
Sbjct: 249 ISSGVCPNVVTCNTLLDGL------CDSGKLKDAL---------EMFKAMQKSMMDIDAT 293

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   FN     G  P + T + L   L    K  E  E+Y+ +       D  +Y+ M+
Sbjct: 294 HA---FN-----GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           + LC   RL EA  +   M  K   P++  +N+L+   C+  ++    +L+ +M   G  
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA--- 524
            N  TY  LI  F +VG I G+L +F  M+  GV PD  T  ++L GL  +  L+ A   
Sbjct: 406 ANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAM 465

Query: 525 FEVFNKSVNH 534
            E    S++H
Sbjct: 466 LEELQMSMDH 475



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 39/291 (13%)

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           K  KLG  P    +   + GL VE R+ EA +L                           
Sbjct: 40  KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDL--------------------------- 72

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
                  F+ M +    P + T + L   LC+  +  E V +   +  +    +  +Y  
Sbjct: 73  -------FHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 406 MVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +V  +C  G    A  ++++M+    + PDV  Y+++++   ++     A+ L+ +M   
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   ++ TY+ +I+ F   G+   A RL   ML + ++PD  T++ L+  L +E +L +A
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            ++  + ++  V       +T +  LC  G    A ++ + +   +   D+
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ S+N+++   C+  +L  A     ++ + G  P +  +N+L+   C ED +  A  L+
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            QM    C  N+ T+  L++     G +  A+ L   M+E G+ P+  TY ++++G+C+ 
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 519 TNLQAAFEVFNK-----SVNHDVMLARSIL 543
            +  +A  +  K      +  DV++  +I+
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAII 159


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/505 (21%), Positives = 212/505 (41%), Gaps = 52/505 (10%)

Query: 57  NPYLLTHHSLALGFFNWASQ-----------QPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +P ++ + ++  GFFN               +       ++Y+ I+ +L  +R ++  + 
Sbjct: 262 SPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAEL 321

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAV 163
           VL+Q+  +    D+  Y  +I         ++A  +F E+K     + P I  CNS LA 
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKK--RGLIPNIVTCNSFLAS 379

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G    A + FD M+ +G +     +   +  +        ++ + + ++   N + 
Sbjct: 380 LCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMK--SNGIA 437

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
               +  ++IH + K   V++A  +  E++ +   PD + Y  V   F  MG + +    
Sbjct: 438 ANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEK 497

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVS 342
             +    G+ P T  Y   I G  +   + +AKEL  E+I  G                 
Sbjct: 498 FNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGI---------------- 541

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
              PR  IVFF+ +I                +LCK  +  +  +++ + +       + +
Sbjct: 542 ---PRPDIVFFSSVIN---------------SLCKDGRVMDAHDIFDLATDIGERPGVIT 583

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N ++   C  G++ +A+ ++  M+  G++PD+  YN+L++   +   +     L+ +M 
Sbjct: 584 FNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQ 643

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N  TY I+++     G    A + FH M+E G     + Y  +L GLC+     
Sbjct: 644 RKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCAD 703

Query: 523 AAFEVFNKSVNHDVMLARSILSTFM 547
            A  +F K    +V  + +IL+T +
Sbjct: 704 EAIILFQKLGTMNVKFSITILNTMI 728



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 188/431 (43%), Gaps = 38/431 (8%)

Query: 158 NSLLAVLASDGYIDNALK-MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N+LL  L      + A+  +   MS  G   + + + + +   C+N+   + L +L  + 
Sbjct: 196 NTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMA 255

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K+  +     V    +IHGF       +A  +  E+  +  KPD + Y ++ +      +
Sbjct: 256 KQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARA 315

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + + E+VL++    G  P T  Y   I G     R+ EA ++                  
Sbjct: 316 MDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKM------------------ 357

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                           F  M ++G +P + T ++   +LCK  +S E  E +  ++A  +
Sbjct: 358 ----------------FREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGH 401

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ SY  ++    + G   +  G+   MK  G+  +   +  L+ A  +  ++  A  
Sbjct: 402 KPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAML 461

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++ +M   G S ++ TY+ +IS FS +G +  A+  F+ M+ +G+ P+   Y+S+++G C
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFC 521

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
               L  A E+ ++ +N  +     +  S+ + SLC+ G  + A  +   L++D+G    
Sbjct: 522 MHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIF-DLATDIGERPG 580

Query: 576 HVILLKSLADA 586
            VI   SL D 
Sbjct: 581 -VITFNSLIDG 590



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/549 (22%), Positives = 232/549 (42%), Gaps = 37/549 (6%)

Query: 85  LSYHSILKSL---SLS-RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           +SY  +LK+L   S+S R ++ +  + KQ      + D   Y  +I        T KA S
Sbjct: 229 VSYSIVLKALCDNSMSQRALDLLQMMAKQG--GACSPDVVAYSTVIHGFFNEGETGKACS 286

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +F+E+    + + P++   N ++  L     +D A  +  +M+  G +  T+ +   I  
Sbjct: 287 LFHEMTR--QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHG 344

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           +    +L +   M  E++KR   +I   V     +   CK  R +EA +  D +  +  K
Sbjct: 345 YATLGRLKEAAKMFREMKKR--GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHK 402

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD  +Y  +   +   G   +   +    +  G+A   + +   I        + +A  +
Sbjct: 403 PDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLI 462

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              +     + D    + +I + S +   + A+  FN M+ +G  P  +  S++ +  C 
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCM 522

Query: 378 RN---KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                K+ ELV   ++++      D+  ++ +++ LC  GR+ +A+ +       G  P 
Sbjct: 523 HGGLVKAKELVS--EMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPG 580

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  +NSL++  C    +  A K+ D M   G   ++ TYN L+  + + G I   L LF 
Sbjct: 581 VITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFR 640

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M  KGV P+  TY  +L GL +     AA + F++ +     +  SI    +  LCR  
Sbjct: 641 EMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRN- 699

Query: 555 HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK-WIQESSPTMLQEISAE 613
                             +D  +IL + L     V+ +I  +   I        +E + E
Sbjct: 700 ----------------NCADEAIILFQKLG-TMNVKFSITILNTMINAMYKVQRKEEAKE 742

Query: 614 LFASLSSSS 622
           LFA++S+S 
Sbjct: 743 LFATISASG 751



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 38/161 (23%)

Query: 402 SYNVMVS-----------------------------------FLCTSGRLREAYGV-IQE 425
           +YN+++                                     LC + R  EA  V +  
Sbjct: 159 TYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHR 218

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILISKFSEV 483
           M   G  P+   Y+ +++A C   + + A  L   M   G  CS ++  Y+ +I  F   
Sbjct: 219 MSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNE 278

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           GE   A  LFH M  +GV PD  TY  +++ LC+   +  A
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKA 319



 Score = 45.8 bits (107), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR- 491
           P    YN LM+ CCR         L+  +  +G   +  T N L+         E A+  
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           L H M E G  P+A +Y+ +L+ LC  +  Q A ++  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQ 252


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 212/471 (45%), Gaps = 13/471 (2%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE---ICNSL 160
           D++L   +  K+ ++  +  F++  L++      A S+F+++K +    GP       S+
Sbjct: 159 DALLTYTEAKKVGVELQLCNFLLKCLVERNQIIYARSLFDDMKSS----GPSPNVYSYSV 214

Query: 161 LAVLASDG---YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           L    + G   Y+  A ++  EM  +GV+ +   +G +++      ++    + L  + +
Sbjct: 215 LMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQ 274

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R N        AV  I GFC+  +V+EA +V D ++     PD  +Y I+ +     G V
Sbjct: 275 RGNPCNTYCFNAV--IQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDV 332

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L +  + G+AP    Y   + GL    ++  A EL   +    F  D  V + +
Sbjct: 333 LTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSII 392

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G    ++       +N M+    VP     ++L    C+     + + V++++  +  
Sbjct: 393 LNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGV 452

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +  ++V        + EA+  + ++++ G+ P++  Y  ++   C+ +       
Sbjct: 453 SPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWG 512

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++  M   G   +   Y+I+I  F +  ++  A RLFH ML++G  P+  TYTSL+ GLC
Sbjct: 513 IFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLC 572

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            +  L     +F   +   +   R + ++ ++  C+R +   A ++ RG+ 
Sbjct: 573 HDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMG 623



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 207/480 (43%), Gaps = 35/480 (7%)

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EIC-NSLLAV 163
           +K VK N  T  + +Y            T++  S +N ++  C+   P    C N+++  
Sbjct: 239 MKGVKPNAATYGTYLYGL--------SRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQG 290

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
              +G +  A+++FD M   G+   T  + + +   C   K G VL+  D + +   + I
Sbjct: 291 FCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLC---KQGDVLTGYDLLVEMARNGI 347

Query: 224 NGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV--FER 280
             ++++   ++HG C+  +VE AF++   L  +  K D I Y I+     L G       
Sbjct: 348 APTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSII-----LNGCCQHLNI 402

Query: 281 EVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
           EVV      +      P   +Y   I      R + +A  + E+++    + +      L
Sbjct: 403 EVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTIL 462

Query: 338 I---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +   G    ID   A +F + + + G VP L     +   LCK NKSD +  ++  +   
Sbjct: 463 VDGFGKERMID--EAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKR 520

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            Y  D   Y++++     + +L EA+ +  +M  +G  P+V  Y SL+   C +D L   
Sbjct: 521 GYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEV 580

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L+  M   G + +   Y  LI  + +   ++ AL +F  M + G++ DA  YT L+ G
Sbjct: 581 VTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGG 640

Query: 515 LCQETNLQAAF----EVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSSD 569
             +   +  A     E+ NK +   V+   + I+  F I   R+ +    + L  G++ D
Sbjct: 641 FSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPD 700



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/442 (19%), Positives = 193/442 (43%), Gaps = 8/442 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A  F     Q+ N  ++   ++++++      Q+     V   +K   +  D+  Y  ++
Sbjct: 265 AWNFLQMLCQRGNPCNT-YCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILV 323

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRG 184
             L +  +    + +  E+  N   I P + +  SLL  L   G ++ A ++F  +  +G
Sbjct: 324 DGLCKQGDVLTGYDLLVEMARN--GIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQG 381

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            +   I + + +   C++  +  V  + +++    ++ +  +     +I+ FC+ + + +
Sbjct: 382 FKHDHIVYSIILNGCCQHLNIEVVCDLWNDMV--HHNFVPDAYNYTSLIYAFCRHRNLTD 439

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  V + +      P+ +   I+ + F     + E  + L K R+ G+ P    YR  I 
Sbjct: 440 ALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIIN 499

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVP 363
           GL    +      +   ++   +  D  V + +I S V ++    A   F+ M+++G  P
Sbjct: 500 GLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKP 559

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T ++L   LC  ++  E+V ++K +       D   Y  ++   C    ++ A  + 
Sbjct: 560 NVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIF 619

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           + M + GL  D   Y  L+    +   +  A+ L ++M   G + ++ TY  LI  + ++
Sbjct: 620 RGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKI 679

Query: 484 GEIEGALRLFHNMLEKGVAPDA 505
           G+   A   +++ML+ G+ PDA
Sbjct: 680 GDERKANMTYNSMLQAGITPDA 701


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 189/428 (44%), Gaps = 19/428 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL  L  +  +  AL +F +M    V    + F   +   C   ++ + +++LD  R 
Sbjct: 54  NTLLHGLCVEDRVSEALDLFHQMCKPNV----VTFTTLMNGLCREGRVVEAVALLD--RM 107

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGS 276
            E+ +    +    I+ G CK      A  +L ++  +   KPD + Y  + +     G 
Sbjct: 108 VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGR 167

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             + + +  + +  G+ P    Y   I G     +  EA+ L + ++  K + D    + 
Sbjct: 168 HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSG 227

Query: 337 LIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-- 393
           LI + V   D  SA      MI  G  P + T + L   LC   K  + +E++K +    
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287

Query: 394 ---------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
                    N    D+++YN+++S L   G+  EA  + +EM  +G+ PD   Y+S++  
Sbjct: 288 MDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMING 347

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C++  L  A +++D M +   S N+ T+N LI+ + + G ++  L LF  M  +G+  +
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A TY +L+ G  +  N+  + ++F + ++  V      +   +  L  +     A  +L 
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLE 467

Query: 565 GLSSDLGH 572
            L   + H
Sbjct: 468 ELQMSMDH 475



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/490 (21%), Positives = 202/490 (41%), Gaps = 73/490 (14%)

Query: 57  NPYLLTHHSLALGFF--NWASQQPNFTH-----SPLSYHSILKSLSLSRQINAIDSVLKQ 109
           +P L+T ++L  G    +  S+  +  H     + +++ +++  L    ++    ++L +
Sbjct: 47  HPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDR 106

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASD 167
           +  + +  +   Y  I+  + +  +T  A ++  +++     I P++   ++++  L  D
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-ELSHIKPDVVIYSAIIDGLWKD 165

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G   +A  +F EM  +G+    + +   I  FC + K                       
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW---------------------- 203

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
                           EA ++L E+ +R+  PD + +  +       G +   + +L++ 
Sbjct: 204 ---------------SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              GV P        + GL      C++ +L + +         ++  A+  S+  ID  
Sbjct: 249 ISSGVCPNVVTCNTLLDGL------CDSGKLKDAL---------EMFKAMQKSMMDIDAT 293

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   FN     G  P + T + L   L    K  E  E+Y+ +       D  +Y+ M+
Sbjct: 294 HA---FN-----GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           + LC   RL EA  +   M  K   P++  +N+L+   C+  ++    +L+ +M   G  
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ---AA 524
            N  TY  LI  F +VG I G+L +F  M+  GV PD  T  ++L GL  +  L+   A 
Sbjct: 406 ANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAM 465

Query: 525 FEVFNKSVNH 534
            E    S++H
Sbjct: 466 LEELQMSMDH 475



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 39/291 (13%)

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           K  KLG  P    +   + GL VE R+ EA +L                           
Sbjct: 40  KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDL--------------------------- 72

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
                  F+ M +    P + T + L   LC+  +  E V +   +  +    +  +Y  
Sbjct: 73  -------FHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 406 MVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +V  +C  G    A  ++++M+    + PDV  Y+++++   ++     A+ L+ +M   
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   ++ TY+ +I+ F   G+   A RL   ML + ++PD  T++ L+  L +E +L +A
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            ++  + ++  V       +T +  LC  G    A ++ + +   +   D+
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ S+N+++   C+  +L  A     ++ + G  P +  +N+L+   C ED +  A  L+
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            QM    C  N+ T+  L++     G +  A+ L   M+E G+ P+  TY ++++G+C+ 
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 519 TNLQAAFEVFNK-----SVNHDVMLARSIL 543
            +  +A  +  K      +  DV++  +I+
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAII 159


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 212/491 (43%), Gaps = 23/491 (4%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           LSP L    +   L TH +    L FF W S++  F H    + S+L  L   R     D
Sbjct: 72  LSPKLKPHHVVNILQTHKNTDSVLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPAD 131

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLA 162
            V                R ++    + +   K  + F     +  D G  +C+  +LL 
Sbjct: 132 HV----------------RILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLI 175

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L     +D A  M+ +M + G+  S + F   I   C+  ++ +   ++  +  R ++ 
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF-RYDAY 234

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            N      LI+ G C+   ++ AF + D +    C P+ + Y  +       G + E   
Sbjct: 235 PNAFTYTSLIL-GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMD 293

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L++  + G+ P    Y   ++ L       EA EL   +       +     ALI  +S
Sbjct: 294 MLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLS 353

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  AI  ++ M+  G VPT  T + L   LC   + +    ++K + ++      +
Sbjct: 354 RDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQ 413

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++   C  G +++A  +  +M + G  P+V  YN+L+   C++  L  A +L + M
Sbjct: 414 TYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIM 473

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +G   +  TY  LIS FS  G++E A  LF+ M+E G++P+  TYT++++G      +
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 522 QAAFEVFNKSV 532
             A  +F K V
Sbjct: 534 DDALALFWKMV 544



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 7/388 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  MFD M   G + +++ +   I   C   +L + + ML+E+ ++    I  +V  
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG---IEPTVYT 309

Query: 230 VLI-IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             I +   C      EA ++L +++ R C P+   +  +       G  FE  + L  K 
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK-FEIAIGLYHKM 368

Query: 289 KL-GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DP 346
              G+ P T  Y   I  L VE R   A  + + ++S          N +I     + D 
Sbjct: 369 LADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+V F+ M++ G  P + T + L    CK+   +  + + +++  N    D  +Y  +
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTEL 488

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S     G+L  A  +   M   G+ P+   Y ++++       +  A  L+ +M  SG 
Sbjct: 489 ISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             + +TYN++IS FS+   I  A      M+++G+ P+  TYTS ++GLC+      AF+
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRG 554
           +F++    +        S+ +  LC+ G
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEG 636



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 206/476 (43%), Gaps = 29/476 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++ +++  LS   +      +  ++  + +   +  Y  +I  L      + AF++F  +
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +      +  N ++      G I  A+ +FD+M   G   + I +   I+ +C+   L
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              + +L+ ++   N +   +     +I GF +G ++E A  +   +      P+ + Y 
Sbjct: 464 NNAMRLLEIMKG--NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYT 521

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVS 324
            + + +  +  V +   +  K  + G  P +  Y   I G      I EA+   G+++  
Sbjct: 522 AIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQ 581

Query: 325 GKFTIDDDVLNALIGSVSSIDP-----RSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCK 377
           G       +L  +I   S ID      R+ + F  F+ M ++   P L T S+L   LC+
Sbjct: 582 G-------LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQ 634

Query: 378 RNKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             ++++  E+Y +L+   ++    ++++Y  +V  LC  GR  EA  ++  M++KGL P 
Sbjct: 635 EGRAED-AEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              Y +L+   C+   +  A  ++  M   G   +L  Y  LI    +   IE A  +F 
Sbjct: 694 EEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQ 753

Query: 495 NMLEKGVAPDATTYTSLLEGLCQET------NLQAAFEVFNKSVNHD--VMLARSI 542
            MLEK    D   +T LL+GL +E        L    E  N ++N    VMLAR +
Sbjct: 754 TMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL 809



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/567 (20%), Positives = 218/567 (38%), Gaps = 79/567 (13%)

Query: 118 DSSVYRFIIPSLIQGK----NTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDN 172
           D+    F   SLI G     N   AF++F+  VK  C D      ++L+  L S+G ++ 
Sbjct: 232 DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGC-DPNSVTYSTLINGLCSEGRLEE 290

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-------------- 218
           A+ M +EM  +G+E +   + + +   C+     + + +L +++KR              
Sbjct: 291 AMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350

Query: 219 -------------------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                               + ++  +V    +I+  C   R E AF +   +      P
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
               Y  + + F LMG + +  V+  K  K G +P    Y   I G   +  +  A  L 
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 320 EVIVSGKFTIDDDVLNALIGSVS------------------SIDPR----SAIV--FFNF 355
           E++       D      LI   S                   I P     +AI+  +FN 
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 356 ------------MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                       M+E G +P+  T + +     K N   E       +       ++ +Y
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK--KLWDQM 461
              +  LC +GR   A+ +  EM+++   P++  Y+SL+   C+E     A+   L  ++
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC  N+ TY  L+      G    A +L  +M +KG+ P    Y +LL G C+   +
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
           ++A  +F         L  S     + +LC+      A  + + +     +SD  +  +L
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVL 770

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTM 606
           L  L    E ++ ++ +  ++  + T+
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTL 797



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 25/272 (9%)

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI----EKGRV-------------- 362
           +I  GKF + D   +  I  ++S   R +++ FN MI    +KGRV              
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNS-GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYD 232

Query: 363 --PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P   T ++L    C+ +  D    ++  +  +    +  +Y+ +++ LC+ GRL EA 
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++EM +KG++P V  Y   + + C       A +L  +M   GC  N++T+  LIS  
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           S  G+ E A+ L+H ML  G+ P   TY +L+  LC E   + AF +F   ++H  + + 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 541 SILSTFMISLCRRGH----FLVATKLLRGLSS 568
              +  +   C  G      ++  K+L+  SS
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 2/238 (0%)

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           TL + + L   L K +  D   ++Y  +  +     + ++N M++ LC  GR++EA  ++
Sbjct: 166 TLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIM 225

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             + R    P+   Y SL+   CR   L  A  ++D+M   GC  N  TY+ LI+     
Sbjct: 226 SHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSE 285

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G +E A+ +   M++KG+ P   TYT  L  LC       A E+  K      +      
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345

Query: 544 STFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWI 599
           +  +  L R G F +A  L   + +D  +  + ++  L+  L      E A    KW+
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 212/479 (44%), Gaps = 42/479 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  I+   +     +A D   K+ K     +++ +Y  +I +  Q  N  +A ++  E
Sbjct: 377 VTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVRE 436

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++    D   +I ++++      G  +  L +F+ +   G   S + +G  I  +   AK
Sbjct: 437 MEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLY---AK 493

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +G++   L+  +  E++ I  ++    ++I+GF K K    AF + +++     KPD + 
Sbjct: 494 VGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVL 553

Query: 264 YRIVAEEFKLMGSV----------------------------FEREVVLKKK-------R 288
           Y  +   F  MG++                            F R   +K+        R
Sbjct: 554 YNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMR 613

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           + G  P  + +   ILGL+ +R++ +A E L E+ ++G    +      + G  +  D  
Sbjct: 614 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTG 673

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A  +F  + ++G    + T   L K  CK  +    + V K +SA +   +   YN+++
Sbjct: 674 KAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILI 733

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-DLLRPAKKLWDQMFASGC 466
                 G + EA  ++Q+MK+ G+ PD+  Y S + ACC+  D+LR A K+ ++M  SG 
Sbjct: 734 DGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLR-ASKMMEEMETSGV 792

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             N+KTY  LI  ++     E ALR F  M   G+ PD   Y  L+  L     +  A+
Sbjct: 793 KPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAY 851



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/457 (18%), Positives = 189/457 (41%), Gaps = 3/457 (0%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++    +  +  +A   F  ++    +    +  SL+   A    ++ AL    +M 
Sbjct: 309 YGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMK 368

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             GVE S + + + +  F +            E + R + M   ++I   +I+ +C+   
Sbjct: 369 EEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHM--NAIIYGNMIYAYCQTCN 426

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +++A  ++ E+           Y  + + + ++G+  +   V ++ ++ G AP    Y  
Sbjct: 427 MDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGC 486

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I       +I +A E+ +++ S     +    + LI G +   D  +A   F  +++ G
Sbjct: 487 LINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDG 546

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P +   +N+ +  C     D  + + K +    +     ++  ++     +G ++ A 
Sbjct: 547 LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 606

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V   M+R G  P V  +N+L+     +  +  A ++ D+M  +G S N  TY  ++  +
Sbjct: 607 DVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGY 666

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           + +G+   A   F  + ++G+  D  TY +LL+  C+   +Q+A  V  +    ++    
Sbjct: 667 AALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 726

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
            + +  +    RRG    A  L++ +       D H 
Sbjct: 727 FVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHT 763


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 225/534 (42%), Gaps = 53/534 (9%)

Query: 60  LLTHHSLALGFFNWAS----QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           L++   L LGF  + +    +   F    + Y +I+ +L  +    A +  + ++     
Sbjct: 167 LMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGF 226

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVF-----------NEVKFN------CE-------- 150
            LDS +   ++    +G N + A  VF           N V ++      CE        
Sbjct: 227 VLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAF 286

Query: 151 ----DIGPEICNS-------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
                +G + C         L+  L   G ID A  +FDEM  RG + +   + V I   
Sbjct: 287 GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGL 346

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C + K+ +   +    RK     I  SVI    +I+G+CK  RV  AF++L  +  R CK
Sbjct: 347 CRDGKIEEANGV---CRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACK 403

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+   +  + E    +G  ++   +LK+    G++P    Y   I GL  E  +  A +L
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKL 463

Query: 319 GEVIVSGKFTIDDDVLN--ALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
              +    F I+ D L   A+I +       D  SA  F   M+ KG      T + L  
Sbjct: 464 LSSM--NCFDIEPDCLTFTAIINAFCKQGKADVASA--FLGLMLRKGISLDEVTGTTLID 519

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            +CK  K+ + + + + L      T   S NV++  L    +++E   ++ ++ + GL P
Sbjct: 520 GVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVP 579

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
            V  Y +L++   R   +  + ++ + M  SGC  N+  Y I+I+   + G +E A +L 
Sbjct: 580 SVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
             M + GV+P+  TYT +++G      L  A E     V     L   I S+ +
Sbjct: 640 SAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 127/560 (22%), Positives = 223/560 (39%), Gaps = 121/560 (21%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
           TP  E+      L   ++P++ ++VI+    + + + + FF W  +  ++   P   + +
Sbjct: 51  TPNWEKNSSLKSLVSHMNPNVASQVIS-LQRSDNDICVRFFMWVCKHSSYCFDPTQKNQL 109

Query: 91  LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF---IIPSLIQG-----KNTQKAFSVF 142
           LK                      + + S +YR    +I +LI+      K   K    F
Sbjct: 110 LK----------------------LIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCF 147

Query: 143 NEVKFNCEDIGPEI---C-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +E++   E  G  +   C +SLL  LA       A   +  M   G     I +   +  
Sbjct: 148 DELR---EVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNA 204

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+N         + ++ K     +  S I   ++ GFC+G  + +A KV D        
Sbjct: 205 LCKNGYTEAAEMFMSKILKI--GFVLDSHIGTSLLLGFCRGLNLRDALKVFD-------- 254

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
                             V  +EV          AP +  Y   I GL      CE   L
Sbjct: 255 ------------------VMSKEVT--------CAPNSVSYSILIHGL------CEVGRL 282

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
            E      F + D                        M EKG  P+  T + L K LC R
Sbjct: 283 EEA-----FGLKDQ-----------------------MGEKGCQPSTRTYTVLIKALCDR 314

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
              D+   ++  +       ++ +Y V++  LC  G++ EA GV ++M +  + P V  Y
Sbjct: 315 GLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITY 374

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+   C++  + PA +L   M    C  N++T+N L+     VG+   A+ L   ML+
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD 434

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRG 554
            G++PD  +Y  L++GLC+E ++  A+++ +      +  D +   +I++ F    C++G
Sbjct: 435 NGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF----CKQG 490

Query: 555 HFLVATKLL-----RGLSSD 569
              VA+  L     +G+S D
Sbjct: 491 KADVASAFLGLMLRKGISLD 510



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SY++++  LC  GRL EA+G+  +M  KG  P    Y  L++A C   L+  A  L+D+M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC  N+ TY +LI      G+IE A  +   M++  + P   TY +L+ G C++  +
Sbjct: 328 IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDL 570
             AFE+                +  M  LCR G    A  LL+     GLS D+
Sbjct: 388 VPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 212/491 (43%), Gaps = 23/491 (4%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           LSP L    +   L TH +    L FF W S++  F H    + S+L  L   R     D
Sbjct: 72  LSPKLKPHHVVNILQTHKNTDSVLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPAD 131

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLA 162
            V                R ++    + +   K  + F     +  D G  +C+  +LL 
Sbjct: 132 HV----------------RILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLI 175

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L     +D A  M+ +M + G+  S + F   I   C+  ++ +   ++  +  R ++ 
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF-RYDAY 234

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            N      LI+ G C+   ++ AF + D +    C P+ + Y  +       G + E   
Sbjct: 235 PNAFTYTSLIL-GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMD 293

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L++  + G+ P    Y   ++ L       EA EL   +       +     ALI  +S
Sbjct: 294 MLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLS 353

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  AI  ++ M+  G VPT  T + L   LC   + +    ++K + ++      +
Sbjct: 354 RDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQ 413

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++   C  G +++A  +  +M + G  P+V  YN+L+   C++  L  A +L + M
Sbjct: 414 TYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIM 473

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +G   +  TY  LIS FS  G++E A  LF+ M+E G++P+  TYT++++G      +
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 522 QAAFEVFNKSV 532
             A  +F K V
Sbjct: 534 DDALALFWKMV 544



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 7/388 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  MFD M   G + +++ +   I   C   +L + + ML+E+ ++    I  +V  
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG---IEPTVYT 309

Query: 230 VLI-IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             I +   C      EA ++L +++ R C P+   +  +       G  FE  + L  K 
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK-FEIAIGLYHKM 368

Query: 289 KL-GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DP 346
              G+ P T  Y   I  L VE R   A  + + ++S          N +I     + D 
Sbjct: 369 LADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+V F+ M++ G  P + T + L    CK+   +  + + +++  N    D  +Y  +
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTEL 488

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S     G+L  A  +   M   G+ P+   Y ++++       +  A  L+ +M  SG 
Sbjct: 489 ISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             + +TYN++IS FS+   I  A      M+++G+ P+  TYTS ++GLC+      AF+
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRG 554
           +F++    +        S+ +  LC+ G
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEG 636



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 192/441 (43%), Gaps = 29/441 (6%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I  L      + AF++F  +  +      +  N ++      G I  A+ +FD+M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   + I +   I+ +C+   L   + +L+ ++   N +   +     +I GF +G 
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG--NGLKPDAWTYTELISGFSRGG 496

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++E A  +   +      P+ + Y  + + +  +  V +   +  K  + G  P +  Y 
Sbjct: 497 KLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYN 556

Query: 301 EFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDP-----RSAIVF-- 352
             I G      I EA+   G+++  G       +L  +I   S ID      R+ + F  
Sbjct: 557 VMISGFSKTNSISEAENFCGKMVKQG-------LLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF---TDMESYNVMVSF 409
           F+ M ++   P L T S+L   LC+  ++++  E+Y +L+   ++    ++++Y  +V  
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGLCQEGRAED-AEMYNLLARLTHYGCEPNVDTYTTLVKG 668

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GR  EA  ++  M++KGL P    Y +L+   C+   +  A  ++  M   G   +
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET------NLQA 523
           L  Y  LI    +   IE A  +F  MLEK    D   +T LL+GL +E        L  
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLH 788

Query: 524 AFEVFNKSVNHD--VMLARSI 542
             E  N ++N    VMLAR +
Sbjct: 789 VMESRNCTLNFQTYVMLAREL 809



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 119/567 (20%), Positives = 218/567 (38%), Gaps = 79/567 (13%)

Query: 118 DSSVYRFIIPSLIQGK----NTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDN 172
           D+    F   SLI G     N   AF++F+  VK  C D      ++L+  L S+G ++ 
Sbjct: 232 DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGC-DPNSVTYSTLINGLCSEGRLEE 290

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-------------- 218
           A+ M +EM  +G+E +   + + +   C+     + + +L +++KR              
Sbjct: 291 AMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350

Query: 219 -------------------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                               + ++  +V    +I+  C   R E AF +   +      P
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
               Y  + + F LMG + +  V+  K  K G +P    Y   I G   +  +  A  L 
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 320 EVIVSGKFTIDDDVLNALIGSVS------------------SIDPR----SAIV--FFNF 355
           E++       D      LI   S                   I P     +AI+  +FN 
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 356 ------------MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                       M+E G +P+  T + +     K N   E       +       ++ +Y
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK--KLWDQM 461
              +  LC +GR   A+ +  EM+++   P++  Y+SL+   C+E     A+   L  ++
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC  N+ TY  L+      G    A +L  +M +KG+ P    Y +LL G C+   +
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
           ++A  +F         L  S     + +LC+      A  + + +     +SD  V  +L
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVL 770

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTM 606
           L  L    E ++ ++ +  ++  + T+
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTL 797



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 25/272 (9%)

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI----EKGRV-------------- 362
           +I  GKF + D   +  I  ++S   R +++ FN MI    +KGRV              
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNS-GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYD 232

Query: 363 --PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P   T ++L    C+ +  D    ++  +  +    +  +Y+ +++ LC+ GRL EA 
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++EM +KG++P V  Y   + + C       A +L  +M   GC  N++T+  LIS  
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           S  G+ E A+ L+H ML  G+ P   TY +L+  LC E   + AF +F   ++H  + + 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 541 SILSTFMISLCRRGH----FLVATKLLRGLSS 568
              +  +   C  G      ++  K+L+  SS
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 2/238 (0%)

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           TL + + L   L K +  D   ++Y  +  +     + ++N M++ LC  GR++EA  ++
Sbjct: 166 TLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIM 225

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             + R    P+   Y SL+   CR   L  A  ++D+M   GC  N  TY+ LI+     
Sbjct: 226 SHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSE 285

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G +E A+ +   M++KG+ P   TYT  L  LC       A E+  K      +      
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345

Query: 544 STFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWI 599
           +  +  L R G F +A  L   + +D  +  + ++  L+  L      E A    KW+
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 214/497 (43%), Gaps = 17/497 (3%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN  L +L        AL +F     R    +   +G+ I  F     L   + +L+E++
Sbjct: 25  CNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMK 84

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
              +     +V+   ++ G C   RV EA +    +  ++C PD + Y  +       G 
Sbjct: 85  S--SGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGK 141

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTID---DD 332
             E + +L++    G AP T  +   I GL       +A + L +VI  G    D   + 
Sbjct: 142 FDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 201

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           ++  L    +S++  S ++    +I KG  PT+   + +    CK    D   ++ +V+ 
Sbjct: 202 IIQRLCNKYNSVELASKVL--GVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMI 259

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 ++ ++ ++++ LC + R+ EA  ++++M   G  P+V  Y++++   C++  + 
Sbjct: 260 EKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVD 319

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +L+  M    C  N+ T+NILI    +   IE A +L+H M E G APD  TY SL+
Sbjct: 320 DAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCRRGHFLVATKLL-----RGL 566
           +GLC+   +  AF++F       V  A ++  ST        G    A ++      +G 
Sbjct: 380 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 439

Query: 567 SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEP 626
           S DL    S  ++L+    +R VE+     +   +  P  +  +SA L      +     
Sbjct: 440 SPDLATYTS--LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497

Query: 627 ILLLLHALQEKCLDSEI 643
           I L        C D  +
Sbjct: 498 IQLFDSMAARGCTDDAL 514



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/524 (21%), Positives = 220/524 (41%), Gaps = 44/524 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y  +++  S +  ++    +L+++K +    ++ V+  ++  L       +A   F  
Sbjct: 58  FTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRA 117

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +C    P++    +L+  L   G  D A  M  EM  +G    T+ F   I   C+ 
Sbjct: 118 MAKDC---APDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKF 174

Query: 203 AKLGQVLSMLDEVRKRE------------------------NSMINGSVIAV-------- 230
               Q   +L++V +R                          S + G VIA         
Sbjct: 175 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 234

Query: 231 --LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             L+I+GFCK K ++ A+K+L+ +  + C P+   + I+         V E + +L+K  
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
             G +P    Y   I GL  + ++ +A EL +++       +    N LI G   +    
Sbjct: 295 MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 354

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVM 406
            A   ++ M E G  P + T ++L   LCK  + DE  ++++ +  +     +  +Y+ +
Sbjct: 355 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 414

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
                  GR+ +A  +   +  KG  PD++ Y SL+   C+        +L ++M + G 
Sbjct: 415 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 474

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + T + ++    E    E A++LF +M  +G   DA  Y  ++EG+ + +    A  
Sbjct: 475 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALA 534

Query: 527 VFNKSV---NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           V  + +   +     + S +   + SLC+ G    A +LL  +S
Sbjct: 535 VLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMS 578



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/564 (18%), Positives = 232/564 (41%), Gaps = 88/564 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++ +L  + + +    +L+++       D+  +  +I  L +  + ++AF V  +
Sbjct: 127 MTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLED 186

Query: 145 V--------KFNCEDIGPEICNS---------LLAVLASDGY------------------ 169
           V            E I   +CN          +L V+ + G+                  
Sbjct: 187 VIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAK 246

Query: 170 -IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS-- 226
            +D+A K+ + M  +G   +   F + I   C+  ++G+   +L++       M+ G   
Sbjct: 247 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK-------MVMGGCS 299

Query: 227 ---VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    +I+G CK  +V++A+++   +  R C P+ + + I+ +       + E   +
Sbjct: 300 PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQL 359

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI--GSV 341
             + R+ G AP    Y   I GL    ++ EA +L + I     +  + V  + +  G  
Sbjct: 360 YHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYA 419

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR----------------------- 378
           +      A   F+ +++KG  P L+T ++L    CK                        
Sbjct: 420 ALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVN 479

Query: 379 ------------NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
                       N ++  ++++  ++A     D   YN++V  +  + +  +A  V++++
Sbjct: 480 TLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQV 539

Query: 427 ---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              + +  +P  S  ++L+E+ C+      AK+L  +M   G +  + +YN L+S  S +
Sbjct: 540 IDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRL 599

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
              + A ++F  M+  G AP+ +T   ++  LC    +  A+E+  +             
Sbjct: 600 QRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETC 659

Query: 544 STFMISLCRRGHFLVATKLLRGLS 567
           +T +   C+ G   +A KLL  ++
Sbjct: 660 NTLIGGYCKSGRADLARKLLEEMT 683



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/436 (21%), Positives = 184/436 (42%), Gaps = 12/436 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++  ++  L  + ++     +L+++ +   + +   Y  +I  L +      A+ +F  
Sbjct: 268 FTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQL 327

Query: 145 V-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + + NC    P +   N L+  L     I+ A +++  M   G     I +   I   C+
Sbjct: 328 MERRNCP---PNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 384

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + ++ +   +   + +   S  N    + L  HG+    R+ +A ++   L  +   PD 
Sbjct: 385 SFQVDEAFQLFQTIPESGVSAANAVTYSTLF-HGYAALGRMADACRIFSMLVDKGFSPDL 443

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +  E+       E   ++++    G  PR N     + GL        A +L + 
Sbjct: 444 ATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDS 503

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCK 377
           + +   T D  + N ++ G   +     A+     +I+K      P+ S +  L ++LC+
Sbjct: 504 MAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 563

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             K+D+  ++   +S   +   + SYN ++S L    R  EA  V + M   G  P++S 
Sbjct: 564 VGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST 623

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
            N ++   C    +  A +L  +M   GC  +++T N LI  + + G  + A +L   M 
Sbjct: 624 VNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT 683

Query: 498 EKGVAPDATTYTSLLE 513
           E G+ P+ TT+  LLE
Sbjct: 684 EAGLEPNDTTH-DLLE 698



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 2/175 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           S N  +  LC   R +EA  + +    +   P+   Y  L+        L  A +L ++M
Sbjct: 24  SCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEM 83

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            +SG  GN   +  L+    + G +  AL  F  M  K  APD  TYT+L+  LC+    
Sbjct: 84  KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKF 142

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG-LSSDLGHSDS 575
             A  +  + V           ST +  LC+ G    A ++L   +   +G+SD+
Sbjct: 143 DEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDA 197


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 220/491 (44%), Gaps = 10/491 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y +++  L  SR+ N   ++L ++   ++  +  VY  +I   ++  N  +AF +  E
Sbjct: 315 FTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKE 374

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            ++L+  L   G +D A  +  +M        TI + + I     +  
Sbjct: 375 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHS 434

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
                 +L E+   EN+ I+ +V    ++IHG C+    E+A  +L+E+  +  KP+   
Sbjct: 435 KKDAFRLLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 491

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   +   G+V     +  K  K+ V P    Y   I GL    R+ E+ +    + 
Sbjct: 492 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 551

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 ++   + LI G + + D  SA      M++ G  P      +L ++  K +  +
Sbjct: 552 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIE 611

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           ++   +K +       D   Y +++  L +SG +  A+ V+  +++ G  PDV  Y+SL+
Sbjct: 612 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 671

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+      A  + D+M   G   N+  YN LI    + G+I  A  +F+++L KG+ 
Sbjct: 672 SGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV 731

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSILSTFMISL--CRRGHFL 557
           P+  TYTSL++G C+  ++  AF ++N+ +   +       S+L+T   S     +  FL
Sbjct: 732 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFL 791

Query: 558 VATKLLRGLSS 568
           +    LRG +S
Sbjct: 792 IEEMFLRGHAS 802



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 3/408 (0%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A K+  EM  RG   +T+ + V I   C +  + +      ++   +  ++       
Sbjct: 261 DTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME--DYGLVPDGFTYG 318

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G CK +R  EA  +LDE+   E KP+ + Y  + + F   G+  E   ++K+    
Sbjct: 319 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 378

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV P    Y   + GL    ++  A  L + +V      D    N +I G       + A
Sbjct: 379 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 438

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               + M   G  P + T S +   LC+  + ++  ++ + ++      +   Y  ++S 
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G +  A  +  +M +  + PD+  YNSL+    +   +  + K + QM   G   N
Sbjct: 499 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 558

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ LI  + + G++E A +L   ML+ G+ P+   Y  LLE   +  +++     F 
Sbjct: 559 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 618

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
             ++  VML   I    + +L   G+   A ++L G+  +    D HV
Sbjct: 619 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 195/453 (43%), Gaps = 44/453 (9%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I  +CK +  + A KVL E+R R C  + + Y ++       G+V E     K     G
Sbjct: 250 LIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 309

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           + P    Y   I GL   RR  EAK L + +   +   +  V   LI G +   +   A 
Sbjct: 310 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 369

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL------------------- 391
                M+  G  P   T  NL + LCK  + D    + K +                   
Sbjct: 370 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 429

Query: 392 ----SANDYF---TDME---------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
               S  D F   ++ME         +Y++M+  LC SG   +A  +++EM  KGL P+ 
Sbjct: 430 FRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 489

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  L+   CRE  +  A +++D+M       +L  YN LI   S+VG +E + + F  
Sbjct: 490 FVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 549

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILSTFMISL 550
           M E+G+ P+  TY+ L+ G  +  +L++A ++  + ++     +DV+    + S F    
Sbjct: 550 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 609

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610
             +      + L +G+  D   +  + IL+ +L+ +  +E A   +  I+++       +
Sbjct: 610 IEKVSSTFKSMLDQGVMLD---NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666

Query: 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            + L + L  ++  E    +L  + +K +D  I
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNI 699



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 182/439 (41%), Gaps = 3/439 (0%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           I+ D   Y  +I +  + +    A  V  E++     +     N L+A L   G ++ A 
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
               +M   G+      +G  I   C++ +  +  ++LDE+   E  +    V+   +I 
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE--LKPNVVVYANLID 357

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GF +    +EAFK++ E+     +P+ I Y  +      MG +    ++LK+  +    P
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
            T  Y   I G        +A  L   + +   + +    + +I G   S +P  A    
Sbjct: 418 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 477

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M  KG  P     + L    C+        E++  ++  +   D+  YN ++  L   
Sbjct: 478 EEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 537

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR+ E+     +M+ +GL P+   Y+ L+    +   L  A++L  +M  +G   N   Y
Sbjct: 538 GRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 597

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             L+  + +  +IE     F +ML++GV  D   Y  L+  L    N++AAF V +    
Sbjct: 598 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK 657

Query: 534 HDVMLARSILSTFMISLCR 552
           +  +    + S+ +  LC+
Sbjct: 658 NGSVPDVHVYSSLISGLCK 676



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 127/549 (23%), Positives = 224/549 (40%), Gaps = 36/549 (6%)

Query: 43  LRDSLSP-SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           +RDS  P ++   +I      HHS     F   S+  N   SP   +Y  ++  L  S +
Sbjct: 411 VRDSHRPDTITYNLIIEGHFRHHSKK-DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 469

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-C- 157
                 +L+++    +  ++ VY  +I    +  N   A  +F+  K    ++ P++ C 
Sbjct: 470 PEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD--KMTKVNVLPDLYCY 527

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+  L+  G ++ + K F +M  RG+  +   +   I  + +N  L     ++   R 
Sbjct: 528 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ--RM 585

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  +    VI + ++  + K   +E+       +  +    D   Y I+       G++
Sbjct: 586 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 645

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
                VL    K G  P  + Y   I GL   +     K  G +    K  +D +++  N
Sbjct: 646 EAAFRVLSGIEKNGSVPDVHVYSSLISGLC--KTADREKAFGILDEMSKKGVDPNIVCYN 703

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI G   S D   A   FN ++ KG VP   T ++L    CK         +Y  + A 
Sbjct: 704 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 763

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D   Y+V+ +   ++G L +A  +I+EM  +G    +S +N+L++  C+   ++  
Sbjct: 764 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQET 822

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEI---------------EGALR----LFHN 495
            KL   +   G   N  T   +IS  SE G++               E A R    LF +
Sbjct: 823 LKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD 882

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+ +G  P       ++   C+E NL  A  + +  V     +  S     + +LCR+G 
Sbjct: 883 MINQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGK 941

Query: 556 FLVATKLLR 564
              A  LL+
Sbjct: 942 LSEALNLLK 950



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%)

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           FM+  G  P + T S L +  CK  + D   +V   +       +  +YNV+++ LC SG
Sbjct: 234 FMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 293

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            + EA+G  ++M+  GL PD   Y +L+   C+      AK L D+M  +    N+  Y 
Sbjct: 294 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 353

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            LI  F   G  + A ++   M+  GV P+  TY +L+ GLC+   +  A
Sbjct: 354 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 403



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 382 DELVEVYK----VLSANDYFTDMESYNVMVSFLCTSGRLREA---------YGVIQEMKR 428
           D LV+ YK    V  A +    M    +  S  C +  L++          + V + M  
Sbjct: 178 DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVG 237

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G+ PDV  Y++L+EA C+      AKK+  +M   GC  N  TYN+LI+     G +E 
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILS 544
           A     +M + G+ PD  TY +L+ GLC+      A  + ++     +  +V++  +++ 
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357

Query: 545 TFMISLCRRGHFLVATKLLR 564
            FM    R G+   A K+++
Sbjct: 358 GFM----REGNADEAFKMIK 373



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 90/221 (40%)

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M ++G  P++   + L K+L + +    L +V + +       D+ +Y+ ++   C   
Sbjct: 199 MMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 258

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
               A  V+ EM+ +G   +   YN L+   CR   +  A      M   G   +  TY 
Sbjct: 259 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 318

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI+   +      A  L   M    + P+   Y +L++G  +E N   AF++  + V  
Sbjct: 319 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 378

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            V   +      +  LC+ G    A+ LL+ +  D    D+
Sbjct: 379 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 15/380 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L   G +  AL   D++  +G + + + +   I   C   K+G     +  +RK
Sbjct: 381 NTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC---KIGDTRGAIKLLRK 437

Query: 218 RENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            +  +   +V +   II   CK + V EA+ +  E+ ++    D + Y  +   F ++G 
Sbjct: 438 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 277 VFE-----REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
           + E      E+VLK      + P    Y   +  L  E ++ EAK +  V++      D 
Sbjct: 498 LKEAIGLLNEMVLKT-----INPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDV 552

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N L+ G +   + + A   FN M   G  P + T + L    CK    DE + ++K 
Sbjct: 553 FTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKE 612

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +   +   D  +Y+ +V  LC SGR+   + +I EM+ +G   DV  YNSL++  C+   
Sbjct: 613 MHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGH 672

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A  L+++M   G   N  T+ IL+    + G ++ A  +F ++L KG   D   Y  
Sbjct: 673 LDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNV 732

Query: 511 LLEGLCQETNLQAAFEVFNK 530
           ++ G C++  L+ A  + +K
Sbjct: 733 MIYGHCKQGLLEEALTMLSK 752



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 192/444 (43%), Gaps = 29/444 (6%)

Query: 167 DGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKREN 220
           DGY     +  A  +F+ MS  GV      + + I  FC+  ++ + L++  E +  R  
Sbjct: 246 DGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP 305

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +I  + I    +  F K K    A  +   L ++  +PD     I+   F  MG +   
Sbjct: 306 PIIQFNKI----LDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFG 361

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             VL K  K G  P T      I GL ++ ++ +A    + +++  F ++      LI  
Sbjct: 362 FSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLING 421

Query: 341 VSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           V  I D R AI     +  +   P +   S +   LCK     E   ++  ++      D
Sbjct: 422 VCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISAD 481

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + +Y+ ++   C  G+L+EA G++ EM  K ++PDV  Y  L++A  +E  ++ AK +  
Sbjct: 482 VVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLA 541

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M  +    ++ TYN L++ +  V E++ A  +F+ M   GV PD  TYT L+ G C+  
Sbjct: 542 VMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSK 601

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL---- 570
            +  A  +F +    +++      S+ +  LC+ G       L+     RG  +D+    
Sbjct: 602 MVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYN 661

Query: 571 ---------GHSDSHVILLKSLAD 585
                    GH D  + L   + D
Sbjct: 662 SLIDGLCKNGHLDKAIALFNKMKD 685



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/565 (20%), Positives = 252/565 (44%), Gaps = 57/565 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++ ++++K L L  Q+        ++      L+   Y  +I  + +  +T+ A     +
Sbjct: 64  VTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRK 123

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +         E+ N+++  L     +  A  +F EM+ +G+  + + +   I+ FC   K
Sbjct: 124 IDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGK 183

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC-KPDFI 262
           L + L +L+ +  +    IN +V    +++   CK  +V+EA  VL  + ++ C K + I
Sbjct: 184 LKEALGLLNVMVLKT---INPNVCTYNILVDALCKEGKVKEAKSVL-AVMLKACVKSNVI 239

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + + L+  V + + V      +GV P  + Y   I G    +R+ +A  L + +
Sbjct: 240 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299

Query: 323 VSGKFT--------------------------------IDDDV--LNALIGSVSSIDPRS 348
           +  +F                                 I  D+  LN LI     +    
Sbjct: 300 ILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQ-- 357

Query: 349 AIVFFNF-----MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
             + F F     ++++G  P+  TL+ L K LC + +  + +  +  L A  +  +  SY
Sbjct: 358 --ITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSY 415

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             +++ +C  G  R A  +++++  +   P+V  Y+++++A C+  L+  A  L+ +M  
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTV 475

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G S ++ TY+ LI  F  VG+++ A+ L + M+ K + PD  TYT L++ L +E  ++ 
Sbjct: 476 KGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKE 535

Query: 524 AFEV----FNKSVNHDVMLARSILSTFMISL-CRRGHFLVATKLLRGLSSDLGHSDSHVI 578
           A  V        V  DV    ++++ +++    ++   +     L G++ D+    ++ I
Sbjct: 536 AKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDV---HTYTI 592

Query: 579 LLKSLADAREVEMAIEHIKWIQESS 603
           L+     ++ V+ A+   K + + +
Sbjct: 593 LINGFCKSKMVDEALNLFKEMHQKN 617



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/466 (21%), Positives = 201/466 (43%), Gaps = 46/466 (9%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +  S ++ ++++K L L  Q+        ++      L+   Y  +I  + +  +T+ A 
Sbjct: 373 YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 432

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +  ++         E+ ++++  L     +  A  +F EM+ +G+    + +   I+ F
Sbjct: 433 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 492

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIREC- 257
           C   KL + + +L+E+  +    IN  V    +++    K  +V+EA  VL  + ++ C 
Sbjct: 493 CIVGKLKEAIGLLNEMVLKT---INPDVRTYTILVDALGKEGKVKEAKSVL-AVMLKACV 548

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KPD   Y  +   + L+  V + + V      +GV P  + Y   I G       C++K 
Sbjct: 549 KPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF------CKSKM 602

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           + E                            A+  F  M +K  VP   T S+L   LCK
Sbjct: 603 VDE----------------------------ALNLFKEMHQKNMVPDTVTYSSLVDGLCK 634

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +   + ++   +       D+ +YN ++  LC +G L +A  +  +MK +G+ P+   
Sbjct: 635 SGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +  L++  C+   L+ A++++  +   G   ++  YN++I    + G +E AL +   M 
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           E G  P+A T+  ++  L ++     A ++  +      M+AR +L
Sbjct: 755 ENGCIPNAVTFDIIINALFKKDENDKAEKLLRQ------MIARGLL 794



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 136/275 (49%), Gaps = 9/275 (3%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           S+ ++D   ++     ++++G  P   TL+ L K LC + +  E +  +  L A  +  +
Sbjct: 38  SIQNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLN 97

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             SY  +++ +C  G  R A   ++++  +   P+V  YN++++A C+  L+  A  L+ 
Sbjct: 98  QVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFS 157

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M   G S N+ TY+ LI  F  VG+++ AL L + M+ K + P+  TY  L++ LC+E 
Sbjct: 158 EMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEG 217

Query: 520 NLQAAFEV----FNKSVNHDVMLARSIL-STFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            ++ A  V        V  +V+   +++   F++   ++   +     L G++ D+    
Sbjct: 218 KVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV---H 274

Query: 575 SHVILLKSLADAREVEMAIEHIK-WIQESSPTMLQ 608
           S+ I++      + V+ A+   K  I    P ++Q
Sbjct: 275 SYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQ 309


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 212/486 (43%), Gaps = 27/486 (5%)

Query: 57  NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL---SLSRQINAI---------- 103
           NPY L   SL L FF++ S  P F+H+  SY S++  L    +++Q  ++          
Sbjct: 84  NPYFLPPKSL-LSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGK 142

Query: 104 ---DSVLKQVKVNKITLDSS-VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
               SV   +   K TL SS V+  ++    +      A   F   K +   I    C  
Sbjct: 143 GSASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKC 202

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  +        AL+ + E+   G   +   F V + + C+  K+     + DE+RK  
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRK-- 260

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFK---VLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             +   +V    +I+G+CK   +EE F+   V++E R+    PD   Y  + +       
Sbjct: 261 TGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVF---PDVFTYSALIDGLCKECQ 317

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + +   + K+    G+ P    +   I G     R+  A E+ + + +     D  + N 
Sbjct: 318 LEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNT 377

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G       R A  F   M ++G +P   T + L    CK    +  +E+ K +    
Sbjct: 378 LIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEG 437

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  ++  ++S LC  G++ +A   ++EM R GL PD   Y  +M+  C++  ++   
Sbjct: 438 IQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGF 497

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL  +M + G    + TYN+L++   + G+++ A  L + ML  GV PD  TY  LL+G 
Sbjct: 498 KLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGH 557

Query: 516 CQETNL 521
           C+   L
Sbjct: 558 CKHGKL 563



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 8/259 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A + F+ + + G  PT  + + L    CK    +E   +  V+     F D+ +Y+ +
Sbjct: 249 KDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSAL 308

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC   +L +A  + +EM  +GL P+   + +L+   C+   +  A +++ QMF  G 
Sbjct: 309 IDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGL 368

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +L  YN LI    + G    A +    M ++G+ PD  TYT+LL+G C+E +L+ A E
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLK 581
           +  + V   + L     +  +  LCR G  + A + LR     GL  D G   ++ +++ 
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDG---TYTMVMD 485

Query: 582 SLADAREVEMAIEHIKWIQ 600
                 +V+M  + +K +Q
Sbjct: 486 GFCKKGDVKMGFKLLKEMQ 504


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/509 (22%), Positives = 213/509 (41%), Gaps = 43/509 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+   +W   Q N      SY +++  +     +     V  ++ V  +  D + Y  +I
Sbjct: 170 AISLLDWMWSQ-NLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLI 228

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
               +  +  K   ++  +  +C  + P +   N ++  L   G  D +L++++ M+   
Sbjct: 229 DGFFKHGDYDKGKEIWERLVKDCS-VYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNE 287

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            E     +   I   CE   +   + +  E+   E+S++  +V    +++GFC+  +++E
Sbjct: 288 REKDMFTYSSLIHGLCEAGNIDGAVRVYKEIV--ESSLVVDAVTHNAMLNGFCRAGKIKE 345

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           +F++   +    C+   ++Y I+ +     G V E   + +   K G  P +  Y   I 
Sbjct: 346 SFELWMVMGKENCQT-VVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIH 404

Query: 305 GLIVERRI-----------------------------CEAKELGEVIV------SGKFTI 329
           GL    R+                             C+   + E I          + +
Sbjct: 405 GLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKL 464

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D  V N LI G V +     AI FF  M  KG  PT+ + + L K LCK  +  E     
Sbjct: 465 DPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFV 524

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           K +   ++  DM + ++++  LC   ++  A  + Q+   KG  PD++ YN LM   C  
Sbjct: 525 KEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSV 584

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             L  A +L+  M  S C  NL T N L+    +V + E A  ++  +L+ G+ PD  +Y
Sbjct: 585 CKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISY 644

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              ++GLC  + +  A E  N ++N  ++
Sbjct: 645 NITIKGLCSCSRISDAIEFLNDALNRGIL 673



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 209/470 (44%), Gaps = 9/470 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+++L +     + +  +S  +  +   ++ +   Y  +I    + +  +KA S+ + +
Sbjct: 118 SYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWM 177

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
               +++ P++ +  +L+  +   G +  ALK+FDEMS RGV      + + I  F ++ 
Sbjct: 178 W--SQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHG 235

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
              +   + + + K + S+    V   ++I+G CK  R +E+ ++ + +   E + D   
Sbjct: 236 DYDKGKEIWERLVK-DCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFT 294

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +       G++     V K+  +  +      +   + G     +I E+ EL   +V
Sbjct: 295 YSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELW--MV 352

Query: 324 SGKFTIDDDV-LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            GK      V  N LI G   +     AI  +  + +KG  P  +T   L   LCK  + 
Sbjct: 353 MGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRL 412

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           ++ ++++K         D  +Y+ MV  LC  GR+ EA  ++ +M ++G   D    N L
Sbjct: 413 NKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPL 472

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +    R   L  A   + +M   GCS  + +YN LI    +      A      MLEK  
Sbjct: 473 INGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEW 532

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
            PD  T + L++GLCQE  ++ A  ++ ++++       ++ +  M  LC
Sbjct: 533 KPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLC 582



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/578 (20%), Positives = 230/578 (39%), Gaps = 55/578 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSL-SRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           AL  F  AS+  N +HS   +H IL+ L+  SR ++ +  ++  VK  K      V   +
Sbjct: 29  ALSLFESASR--NKSHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCKEDVALTV 86

Query: 126 IPSLIQGKNTQKAFSVFNEVK--FNCE--------------------------------D 151
           I +  + K + KA   F  ++  F C+                                D
Sbjct: 87  IKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMD 146

Query: 152 IGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           + P  +  N L+ +      I+ A+ + D M  + ++     +G  I    +   L   L
Sbjct: 147 VSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGAL 206

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK--PDFIAYRIV 267
            + DE+  R   ++       ++I GF K    ++  ++ + L +++C   P+ + Y I+
Sbjct: 207 KVFDEMSVR--GVVADVTCYNMLIDGFFKHGDYDKGKEIWERL-VKDCSVYPNVVTYNIM 263

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
                  G   E   + ++  K         Y   I GL     I  A  + + IV    
Sbjct: 264 INGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSL 323

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            +D    NA++                 ++ K    T+ + + L K L +  K +E + +
Sbjct: 324 VVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISI 383

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +++L       +  +Y V++  LC +GRL +A  + +E +      D   Y+S+++  C+
Sbjct: 384 WELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCK 443

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  +  A  + +QM   G   +    N LI+ F    ++E A+  F  M  KG +P   +
Sbjct: 444 EGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVS 503

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL---- 563
           Y +L++GLC+      A+    + +  +        S  M  LC+     +A  L     
Sbjct: 504 YNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQAL 563

Query: 564 -RGLSSDLGHSDSHVILLKSLADAREVEMAIE---HIK 597
            +G   D+   +   IL+  L    ++E A++   H+K
Sbjct: 564 DKGFKPDITMYN---ILMHGLCSVCKLEDALQLYSHMK 598



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/401 (19%), Positives = 173/401 (43%), Gaps = 49/401 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y S++  L  +  I+    V K++  + + +D+  +  ++    +    +++F ++  
Sbjct: 293 FTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMV 352

Query: 145 V-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + K NC+ +     N L+  L  +G ++ A+ +++ +  +G    +  +GV I   C+N 
Sbjct: 353 MGKENCQTVVSY--NILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNG 410

Query: 204 KLGQVLSMLDEVRKRE--------NSMING--------SVIAVL---------------- 231
           +L + L +  E             +SM++G          I+++                
Sbjct: 411 RLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCN 470

Query: 232 -IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSVFEREVVL 284
            +I+GF +  ++E+A     E+  + C P  ++Y  +      AE F    S F +E++ 
Sbjct: 471 PLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYS-FVKEMLE 529

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           K+ +     P        + GL  E++I  A  L +  +   F  D  + N L+  + S+
Sbjct: 530 KEWK-----PDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSV 584

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+  ++ M     VP L T + L + L K    ++  E++  +  +    D+ SY
Sbjct: 585 CKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISY 644

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           N+ +  LC+  R+ +A   + +   +G+ P    +N L+ A
Sbjct: 645 NITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILVRA 685



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 3/207 (1%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + SYN +++          A    +  +   + P++  YN L++  C++  +  A  L D
Sbjct: 116 VRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLD 175

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M++     ++ +Y  LI+   +VG++ GAL++F  M  +GV  D T Y  L++G  +  
Sbjct: 176 WMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHG 235

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSD--SH 576
           +     E++ + V    +    +    MI+ LC+ G F  + ++   ++ +    D  ++
Sbjct: 236 DYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTY 295

Query: 577 VILLKSLADAREVEMAIEHIKWIQESS 603
             L+  L +A  ++ A+   K I ESS
Sbjct: 296 SSLIHGLCEAGNIDGAVRVYKEIVESS 322


>gi|147790305|emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 202/483 (41%), Gaps = 73/483 (15%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+++L+  G    A  +F  +  +G       +   +W  C+  +    L++L  ++K
Sbjct: 192 NLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKK 251

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                ++ +     +++GF K    EEAF +LDE++I  CKP+ I Y ++ +     G +
Sbjct: 252 M--GAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRI 309

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L K  K G  P    Y   +  L  + R  E  EL +VI   + + D     AL
Sbjct: 310 GDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAAL 369

Query: 338 IGSV--------------------SSIDPRSAIVFFNF----------------MIEKGR 361
            G +                     ++D     ++F+                 M+EKG 
Sbjct: 370 TGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGL 429

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS------------- 408
           VPT  + + +    C+ N  DE ++++      +   D+ S+N ++S             
Sbjct: 430 VPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRR 489

Query: 409 ----------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                 + C  G++ E   +++ M R GL+P V  +N L++  C
Sbjct: 490 VLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLC 549

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +  LL  A +++ +   +G   N  +YNILI      G      +L  +M    + PDA 
Sbjct: 550 KNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAV 609

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY S ++GLC+E  +  A ++ ++ +   +    +I +T + ++ +RG F     LL+ +
Sbjct: 610 TYGSFIKGLCKEGKISVAIQLRDQMLESGLTPTVTIYNTILAAMFQRGKFWDIVSLLKDM 669

Query: 567 SSD 569
           + D
Sbjct: 670 TMD 672



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 135/353 (38%), Gaps = 44/353 (12%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L   L   G +  A K+   +   G       + ++    C   K G+ LS+L  +   
Sbjct: 368 ALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMV-- 425

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEFKLMGSV 277
           E  ++  +V    I++GFC+   ++EA ++ D        PD +++  I++   K   S 
Sbjct: 426 EKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSS 485

Query: 278 FEREVVLKKKR---KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             R V+ + +    KL V   T   + F                                
Sbjct: 486 MIRRVLYRMEYEGVKLNVVSSTCLIQYF-------------------------------- 513

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
              IG +S       +     MI  G  PT+ T + L   LCK         +++     
Sbjct: 514 -CAIGKISE-----CLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAHRIFREFRNT 567

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            YF +  SYN+++      G       ++++M    L PD   Y S ++  C+E  +  A
Sbjct: 568 GYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVA 627

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            +L DQM  SG +  +  YN +++   + G+    + L  +M   G  P+A +
Sbjct: 628 IQLRDQMLESGLTPTVTIYNTILAAMFQRGKFWDIVSLLKDMTMDGCEPNAVS 680



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 3/237 (1%)

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           FT    +L   +G  S +D  S    F FM+     PT  TL+ L   L K   + E   
Sbjct: 153 FTSLLKILKKWLGLGSLVDSMSV---FEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHF 209

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V++VL          SYN ++  LC  G+   A  ++  +K+ G   + + Y +L+    
Sbjct: 210 VFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFS 269

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E L   A  + D+M   GC  N+ TY +++    + G I  AL +   M ++G  PD  
Sbjct: 270 KEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIV 329

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           TY  +L  L  +       E+       ++       +     L +RG   VA KLL
Sbjct: 330 TYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRGQVRVANKLL 386



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 18/249 (7%)

Query: 294 PRTNDYREFILG--------LIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSV 341
           P  NDY   +          LIV   + +     K LG    +  F I  D      G  
Sbjct: 76  PSVNDYNALLYHYLKSSSRHLIVLDELVQVYFGMKRLGPYPNASTFNILLD------GMT 129

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S+ + R+A  F   M   G +P+ ++L  + K         + + V++ +   +YF    
Sbjct: 130 STGNLRAAFFFAEEMWRSGFLPSFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEYFPTEP 189

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           + N+++S L  +G  REA+ V + +  KG       YN ++ A C+      A  L   +
Sbjct: 190 TLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSL 249

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N  +Y  L+  FS+ G  E A  +   M   G  P+  TYT +++ LC E  +
Sbjct: 250 KKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRI 309

Query: 522 QAAFEVFNK 530
             A ++  K
Sbjct: 310 GDALDILGK 318


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 181/412 (43%), Gaps = 4/412 (0%)

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           G    N++    A  G ++   +++  M   G      G+G+ I   C+     +   +L
Sbjct: 9   GAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLL 68

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
             +R +       ++    II+  CK  RVEEA ++++++  R   PD + Y  + E   
Sbjct: 69  HTMRLKR--FKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLC 125

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
               + +    +++    G+ P    Y   + GL  E ++ EA+ L E +V  +   +  
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N LI G   +    +A   F  M  KG VPT  + + L    CK+       +V+  +
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM 245

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             ++   ++ +Y  ++  L  SG+++ A  V+  M +KG+ P+V+ Y+ L++  C+   +
Sbjct: 246 VRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRV 305

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A KL +QM   G +  + TYNIL++      ++E A +LF  M ++   P   TY +L
Sbjct: 306 DEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTL 365

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           L  LC    L  A  ++ + +            T    L R G    A +L+
Sbjct: 366 LRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 417



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 161/372 (43%), Gaps = 4/372 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L++ L   G  D A K+   M  +  +   I +   I   C   KL +V    + + K  
Sbjct: 51  LISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLC---KLNRVEEARELIEKMA 107

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                 ++    I+   CK KR+++A   ++E+  R  KPD   Y  V         V E
Sbjct: 108 RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 167

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
             ++ +K  K  + P    Y   I GL    RI  A EL + +    +   +   N LI 
Sbjct: 168 ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G     D  +A   F+ M+    VP + T + L   L K  K     EV   +       
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 287

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +Y+ ++   C   R+ EA+ ++++M  +G+ P V  YN L+ + CR D L  A KL+
Sbjct: 288 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 347

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             M    C   + TYN L+       +++GA RL+  M+ KG  PDA TY +L  GL + 
Sbjct: 348 RGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRA 407

Query: 519 TNLQAAFEVFNK 530
             +  A E+  K
Sbjct: 408 GKVHEAQELMEK 419



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 170/365 (46%), Gaps = 39/365 (10%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-REVVLKKKRK 289
           ++I   CK    +EA+K+L  +R++  K   IAY  +      +  V E RE++ K  R 
Sbjct: 50  ILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR- 108

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
              AP          G IVER +C+ K            IDD +      +   I P + 
Sbjct: 109 --YAPPD----ALTYGPIVER-LCKTKR-----------IDDALATVEEMATRGIKPDAF 150

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           I  +NF++                 LC+  K +E   +++ +       ++ +YN +++ 
Sbjct: 151 I--YNFVLS---------------GLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLING 193

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC + R+  AY + +EM  KG  P    YN+L++  C++  L  AK ++D+M  S C  N
Sbjct: 194 LCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPN 253

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  LI   S+ G+++ A  +   M++KGV P+  TY+ L++G C+   +  A ++  
Sbjct: 254 VVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLE 313

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           + V   +       +  + SLCR      A KL RG++    H    ++  LL++L   +
Sbjct: 314 QMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHK 373

Query: 588 EVEMA 592
           +++ A
Sbjct: 374 QLDGA 378



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/412 (19%), Positives = 186/412 (45%), Gaps = 4/412 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++++    + + ++  +  V + +     TL +S Y  +I  L +  N  +A+ + + +
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +           ++++  L     ++ A ++ ++M+ R      + +G  + + C+  ++
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCKTKRI 130

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
              L+ ++E+  R   +   + I   ++ G C+ ++VEEA  + +++  +   P+ + Y 
Sbjct: 131 DDALATVEEMATR--GIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYN 188

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +         +     + K+    G  P    Y   I G   ++ +  AK++ + +V  
Sbjct: 189 TLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248

Query: 326 KFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +      LI  +S S   ++A    + M++KG  P ++T S L    CK  + DE 
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 308

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++ + +        + +YN++++ LC + +L +A+ + + M ++   P V  YN+L+ A
Sbjct: 309 HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            C    L  A +L+ +M A GC  +  TY+ L    +  G++  A  L   M
Sbjct: 369 LCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 42/352 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+Y  I++ L  +++I+   + ++++    I  D+ +Y F++  L Q +  ++A  +F  
Sbjct: 115 LTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFE- 173

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + I P +   N+L+  L     I+ A ++F EM+ +G   + + +          
Sbjct: 174 -KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY---------- 222

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                            N++I+G          FCK K +  A  V D++    C P+ +
Sbjct: 223 -----------------NTLIDG----------FCKKKDLVAAKDVFDKMVRSNCVPNVV 255

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +     G V     VL    K GV P    Y   I G    RR+ EA +L E +
Sbjct: 256 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 315

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V+          N L+ S+   D    A   F  M ++   PT+ T + L + LC   + 
Sbjct: 316 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 375

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           D    +Y  + A     D  +Y+ +   L  +G++ EA  ++++MK    +P
Sbjct: 376 DGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 1/207 (0%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P  +T + ++    K  + +++ EVY+ +    Y      Y +++S LC  G   EAY 
Sbjct: 7   IPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYK 66

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++  M+ K        Y++++   C+ + +  A++L ++M A     +  TY  ++ +  
Sbjct: 67  LLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLC 125

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +   I+ AL     M  +G+ PDA  Y  +L GLCQE  ++ A  +F K V   +     
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSS 568
             +T +  LC+      A +L + ++ 
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAG 212


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 218/541 (40%), Gaps = 64/541 (11%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFII 126
           L  F +++  P     PL  H++   L LS   + A+   L   +   +   SS +  ++
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 127 PSLIQ-GKNTQ--KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +    G+N    +AFS  +E +         + N++L  L   G I  AL +++ M   
Sbjct: 145 AAHSSAGRNADAVQAFSRMDEFQSRPTAF---VYNTILKALVDSGVILLALALYNRMVAA 201

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G   +   + V +   C+    G  L M DE+  R   M N  +  VL+    C   +++
Sbjct: 202 GCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDR-GIMPNVKIYTVLL-SSLCNAGKID 259

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVLKKKRKLGVAPRTNDYR 300
           EA ++L  ++ + C PD + Y         +G V   F+R V+L+     G A     Y 
Sbjct: 260 EAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG---GFALGLKGYS 316

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I GL   RR  E     + ++    + D  +   +I G   +     A+ F + M +K
Sbjct: 317 CLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G VP     + + K LC     +    +   +  N+   D  +  +M+  LC  G + EA
Sbjct: 377 GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEA 436

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------------------ 461
             +  EM   G DP V  YN+L++   RE  L  A+ L+ +M                  
Sbjct: 437 MQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQ 496

Query: 462 ------------------------------FASGCSGNLKTYNILISKFSEVGEIEGALR 491
                                           SG   ++ TYN LI+   +   ++GA+R
Sbjct: 497 VCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVR 556

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           LF  +  KG++PD  TY +L++GL +      A  +F   +      + SI ++ M SLC
Sbjct: 557 LFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLC 616

Query: 552 R 552
           R
Sbjct: 617 R 617



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/505 (21%), Positives = 204/505 (40%), Gaps = 63/505 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++ L  L    ++N     L  ++     L    Y  +I  L Q +   + F  +  
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     +I P++    + +   A  G I++AL   D M  +G    T  +   +   C++
Sbjct: 338 MLE--RNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDH 395

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  ++  E+   +N+++  S    ++I G CK   V+EA ++ DE+    C P  +
Sbjct: 396 GDLERAHTLRSEML--QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVM 453

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F   G + E   +L  K ++G  P    +    LG     ++C+++ L +++
Sbjct: 454 TYNALIDGFYREGRL-EEARMLFHKMEMGNNPSL--FLRLTLG---ANQVCDSESLRKLV 507

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                    D+  +  G V       A      +I+ G VP + T + L   LCK    D
Sbjct: 508 --------HDMCQS--GQV-----LKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
             V ++K L       D  +Y  ++  L  + R  +A  + Q + + G  P +S YNS+M
Sbjct: 553 GAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMM 612

Query: 443 EACCREDLLRPAKKLW-------------------------DQMFASGCSGNLKT----- 472
            + CR   L  A  LW                         D     G    +K      
Sbjct: 613 RSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYG 672

Query: 473 ------YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
                 Y I +    +V   + ALR+FH + E G+         L+  LC + NL AA +
Sbjct: 673 YISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVD 732

Query: 527 VFNKSVNHDVMLARSILSTFMISLC 551
           +   +++  ++L++ + +  +  LC
Sbjct: 733 IMLYALSKSIILSQPVGNRLLRWLC 757



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 193/473 (40%), Gaps = 24/473 (5%)

Query: 75  SQQPNFTHSPLS--YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           S+   F   P +  Y++ILK+L  S  I    ++  ++       + + Y  ++  L + 
Sbjct: 161 SRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQ 220

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                A  +F+E+         +I   LL+ L + G ID A+++   M  +G     + +
Sbjct: 221 GMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTY 280

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
             F+   C+  ++ +    L  V  ++     G      +I G  + +R +E F     +
Sbjct: 281 NAFLSGLCKVGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R   PD + Y I+       G + +    L   +K G  P T  Y   +  L     +
Sbjct: 339 LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDL 398

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLS 369
             A  L   ++     +D      +I  +     +D   A+  F+ M E G  PT+ T +
Sbjct: 399 ERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD--EAMQIFDEMGEHGCDPTVMTYN 456

Query: 370 NLSKNLCKRNKSDELVEVYK--------------VLSANDYFTDMESYNVMVSFLCTSGR 415
            L     +  + +E   ++                L AN    D ES   +V  +C SG+
Sbjct: 457 ALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQ-VCDSESLRKLVHDMCQSGQ 515

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +AY +++ +   G+ PDV  YN+L+   C+   L  A +L+ ++   G S +  TY  
Sbjct: 516 VLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LI           A+ LF N+L+ G +P  + Y S++  LC+   L  A  ++
Sbjct: 576 LIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 8/204 (3%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN ++  L  SG +  A  +   M   G  P+ + YN LM+  C++ +   A K++D+M 
Sbjct: 175 YNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML 234

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N+K Y +L+S     G+I+ A++L  +M +KG  PD  TY + L GLC+   + 
Sbjct: 235 DRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVN 294

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISL--CRR---GHFLVATKLLRGLSSDLGHSDSHV 577
            AF+      +    L     S  +  L   RR   G     T L R +S D+     + 
Sbjct: 295 EAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVV---LYT 351

Query: 578 ILLKSLADAREVEMAIEHIKWIQE 601
           I+++  A+A  +E A+  +  +++
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKK 375



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/419 (18%), Positives = 159/419 (37%), Gaps = 53/419 (12%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL F +   ++  F      Y+++LK L     +    ++  ++  N + LDS+    +I
Sbjct: 366 ALSFLD-VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD--EMSHRG 184
             L +     +A  +F+E+  +  D      N+L+     +G ++ A  +F   EM +  
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484

Query: 185 VEFSTIGFGVFIWKFCENAKL----------GQVLSMLDEVRKRENSMINGSVIAV-LII 233
             F  +  G    + C++  L          GQVL     +R   +S +   V+    +I
Sbjct: 485 SLFLRLTLGAN--QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLI 542

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +G CK + ++ A ++  EL+++   PD I Y  + +         +  ++ +   + G +
Sbjct: 543 NGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSS 602

Query: 294 PRTNDYREFILGLIVERRICEAKEL--------------GEVIVSGKFTIDDDVLNALIG 339
           P  + Y   +  L   +++ +A  L               EV+ +    I+D  L+  + 
Sbjct: 603 PSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVR 662

Query: 340 SVSSIDPR-----------------------SAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            +  ID                          A+  F+ + E G   T +  + L   LC
Sbjct: 663 ELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLC 722

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
                +  V++     +          N ++ +LC   R ++A  +   M   G D DV
Sbjct: 723 WDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRMHLVGYDMDV 781


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 167/361 (46%), Gaps = 12/361 (3%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           MS  G        G F    C+  +    L M++    RE+  ++ +V+   +I G  + 
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIE----REDFKLD-TVLCTHMISGLMEA 55

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              +EA   L  +R   C P+ + YR +   F     +   + ++      G  P  + +
Sbjct: 56  SYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLF 115

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID--PRSAIV-----F 352
              +     E+    A +L   + +        V N  IGS+   +  P   ++      
Sbjct: 116 NSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKI 175

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +  M+    V     ++N ++ LC   K D+  ++ K +    +  D  +Y+ +++FLC 
Sbjct: 176 YGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCH 235

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           + ++ +A+ + QEMK  G+ PDV  Y  L+++ C+  L+  A+ L+++M + GCS  + T
Sbjct: 236 ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 295

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y  LI  + +  ++  A  +FH M++ G  P+  TY +L++GLC+  N+  AFEV+ K +
Sbjct: 296 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLI 355

Query: 533 N 533
            
Sbjct: 356 G 356



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/469 (20%), Positives = 198/469 (42%), Gaps = 25/469 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++L      +Q+     ++  +       + S++  ++ S    K+   A+ + N 
Sbjct: 78  VTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 137

Query: 145 VKFNCEDIGPEICNSLLAV------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +       G  + N  +        L S   +D A K++ EM       + +    F   
Sbjct: 138 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 197

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C   K  +   ++ E+ ++    +  +     +I   C   +VE+AF +  E+++    
Sbjct: 198 LCGVGKFDKAFQLIKEMMRK--GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 255

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD   Y I+ + F   G + + + + ++ R +G +P    Y   I   +  +++ +A ++
Sbjct: 256 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 315

Query: 319 GEVIVSGKFTIDDDVLNALI------GSVS-----------SIDPRSAIVFFNFMIEKGR 361
              +V      +D    AL+      G++S           + D   +  +F        
Sbjct: 316 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 375

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T   L   LCK +K D   E+   + ++    +   Y+ ++   C +G++  A  
Sbjct: 376 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 435

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M + G  P V  Y SL++   ++  L  A K+  QM    C+ N+ TY  +I    
Sbjct: 436 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 495

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +GE E AL+L   M EKG +P+  TYT+L++GL +   +  + ++F +
Sbjct: 496 RIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 544



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/519 (19%), Positives = 198/519 (38%), Gaps = 93/519 (17%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS--LLAV 163
           ++K++       D+S Y  +I  L      +KAF +F E+K     + P++     L+  
Sbjct: 210 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM--VGVTPDVYTYTILIDS 267

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKREN 220
               G I+ A  +F+EM   G   + + +   I  + +  ++ Q   +   + +   R N
Sbjct: 268 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 327

Query: 221 SMINGSVIAVL----------------------------------------------IIH 234
            +  G+++  L                                              ++ 
Sbjct: 328 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 387

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK  +V+ A ++LD +    C+P+ I Y  + + F   G +   + V  +  K G  P
Sbjct: 388 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 447

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
             + Y   I  +  + R+  A ++   ++    T +     A+I  +  I +   A+   
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M EKG  P + T + L   L K  K D  ++++  +S      +  +Y V+++ LC +
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 567

Query: 414 GRLREA---------------------------------YGVIQEMKRKGLDPDVSFYNS 440
           G L +A                                  G+++EM+  G  P    Y  
Sbjct: 568 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGM 627

Query: 441 LMEACCREDLLRPAKKLWDQMF--ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           L++   +   L  A +L  +M    S    +   Y  LI       ++E A RL+  M  
Sbjct: 628 LIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTR 687

Query: 499 KGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVN 533
           +G  P+ + +  L++GL +    +  LQ  + + ++ VN
Sbjct: 688 RGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 726


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 217/474 (45%), Gaps = 16/474 (3%)

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK----FNCEDIG 153
           R  +A+D V +++     T D   Y  +I  L   K +Q+A  +   +     +NC    
Sbjct: 144 RTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCS--- 200

Query: 154 PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P + +  +++     +G +D A  +FDEM  +G     + +   I   C+   + +  ++
Sbjct: 201 PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAI 260

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           L  +  +   M N     ++I  G+C   ++EEA ++L ++     +PD + Y ++ + +
Sbjct: 261 LQHMFDK-GVMPNTRTYNIMI-RGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYY 318

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             +G   E   V     + G  P +  Y   + G   +  + + ++L ++++      + 
Sbjct: 319 CKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEH 378

Query: 332 DVLNALIGSVS---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
              N LI + +   ++D   A+  F  M + G  P + + S +   LCK  + ++ V  +
Sbjct: 379 RAFNILICAYAKHGAVD--KAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHF 436

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + +     ++ S+  ++  LC+ G  ++   +  EM  +G+ PD  F N++M+  C+E
Sbjct: 437 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A+  +D +   G   N+ +YN LI  +  VG+++ +++ F  M+  G+ PD+ TY
Sbjct: 497 GRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            +LL G  +   ++ A  ++ +    DV       +  +  L + G  + A +L
Sbjct: 557 NALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAAREL 610



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 182/439 (41%), Gaps = 23/439 (5%)

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN-------ALKMFDEMSHRGVEFS 188
           + A ++F+E+            NS+L V+A      +       A+ +F+ M+  GV   
Sbjct: 31  EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMM 90

Query: 189 TIG---FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
                  G+ I  FC   +L    +      K    + N  V    +I G C GKR ++A
Sbjct: 91  AANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQN--VTLNQLIKGLCDGKRTDDA 148

Query: 246 ----FKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTND 298
               F+ + EL      PD  +Y  + +     K      E  + +        +P    
Sbjct: 149 MDMVFRRMPELGY---TPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVS 205

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I G   E  + +A  L + ++   F  D    ++LI G   +     A      M 
Sbjct: 206 YSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMF 265

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +KG +P   T + + +  C   + +E V + K +S +    D+ +Y +++ + C  GR  
Sbjct: 266 DKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCA 325

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  V   M RKG  P+ + Y+ L+     +  L   + L D M   G     + +NILI
Sbjct: 326 EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 385

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +++ G ++ A+  F  M + G+ PD  +Y++++  LC+   ++ A   FN+ V+  + 
Sbjct: 386 CAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLS 445

Query: 538 LARSILSTFMISLCRRGHF 556
                 ++ +  LC  G +
Sbjct: 446 PNIISFTSLIHGLCSIGEW 464



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/454 (20%), Positives = 203/454 (44%), Gaps = 18/454 (3%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
            Q+PN T     YH +L   +    +  +  +L  +  + I  +   +  +I +  +   
Sbjct: 338 GQKPNST----IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGA 393

Query: 135 TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             KA + F E++ N   + P++ +  +++ +L   G +++A+  F++M   G+  + I F
Sbjct: 394 VDKAMTAFTEMRQN--GLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISF 451

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I   C   +  +V  +  E+  R   +   ++    I+   CK  RV EA    D +
Sbjct: 452 TSLIHGLCSIGEWKKVEELAFEMINR--GIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMV 509

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
                KP+ ++Y  + + +  +G + E      +   +G+ P +  Y   + G     R+
Sbjct: 510 IHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRV 569

Query: 313 CEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            +A    +E+    V       + +L+ L  +   +  R     +  M+++G    + T 
Sbjct: 570 EDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARE---LYMKMVDRGTQLRIETY 626

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   LC+ +  DE + +++ L + ++  D+ ++N++++ L   GR+ EA  +   M  
Sbjct: 627 NTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVL 686

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G  P V  Y+ ++++   E LL  +  L+  M  +GC+ +    N++I +  E G++  
Sbjct: 687 RGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRR 746

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A      + EK  + +A+T  +LL  +  E   Q
Sbjct: 747 AGTYLTKIDEKNFSVEAST-AALLIPIVSEKKYQ 779



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 196/446 (43%), Gaps = 7/446 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ +++      Q+     +LK++  + +  D   Y  +I    +     +A SVF+ +
Sbjct: 275 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSM 334

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
               +     I + LL   A+ G + +   + D M   G+ F    F + I  + ++  +
Sbjct: 335 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAV 394

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            + ++   E+R  +N +    V    +IH  CK  RVE+A    +++      P+ I++ 
Sbjct: 395 DKAMTAFTEMR--QNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFT 452

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +      +G   + E +  +    G+ P        +  L  E R+ EA++  ++++  
Sbjct: 453 SLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHI 512

Query: 326 KFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
               +    N LI     V  +D   +I  F+ M+  G  P   T + L     K  + +
Sbjct: 513 GVKPNVVSYNTLIDGYCFVGKMD--ESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVE 570

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + + +Y+ +   D      + N+++  L  +GR+  A  +  +M  +G    +  YN+++
Sbjct: 571 DALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVL 630

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C    +  A ++++ + +     ++ T+NI+I+   +VG I+ A  LF  M+ +G  
Sbjct: 631 GGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPV 690

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVF 528
           P   TY+ +++   +E  L+ + ++F
Sbjct: 691 PHVITYSLMIKSRIEEGLLEESDDLF 716



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 164/379 (43%), Gaps = 13/379 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+   A  G +D A+  F EM   G+    + +   I   C   K+G+V   +    +
Sbjct: 382 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILC---KIGRVEDAVYHFNQ 438

Query: 218 RENSMINGSVIAVL-IIHGFC---KGKRVEE-AFKVLDELRIRECKPDFIAYRIVAEEFK 272
             +  ++ ++I+   +IHG C   + K+VEE AF++++    R   PD I    + +   
Sbjct: 439 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMIN----RGIHPDAIFMNTIMDNLC 494

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E +        +GV P    Y   I G     ++ E+ +  + +VS     D  
Sbjct: 495 KEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSW 554

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             NAL+ G   +     A+  +  M  K       T + +   L +  +     E+Y  +
Sbjct: 555 TYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKM 614

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                   +E+YN ++  LC +  + EA  + ++++ K  + DV  +N ++ A  +   +
Sbjct: 615 VDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRI 674

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             AK L+  M   G   ++ TY+++I    E G +E +  LF +M + G A D+     +
Sbjct: 675 DEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVI 734

Query: 512 LEGLCQETNLQAAFEVFNK 530
           +  L ++ +++ A     K
Sbjct: 735 IRRLLEKGDVRRAGTYLTK 753


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/569 (23%), Positives = 254/569 (44%), Gaps = 32/569 (5%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R WT  L+ ++  L       PSLV  V++      H  AL F+ W  +   FTH+P + 
Sbjct: 67  RAWTTRLQNSIRSL--VPEFDPSLVYNVLHGAASPEH--ALQFYRWVERAGLFTHTPETT 122

Query: 88  HSILKSLSLSRQINAIDSVL---KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
             I++ L    ++N    +L    +   ++ T+    +  +I S  +    Q++  +F +
Sbjct: 123 LKIVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKK 182

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +K    D   +  ++L  V+   G    A + ++ M +  VE +   + + +W    + +
Sbjct: 183 MKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLWGMFLSLR 242

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   +   ++++ R   ++   V    +I+G+ + K+VEEA K+  E++ R+  P+ I++
Sbjct: 243 LDTAVRFYEDMKSR--GILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISF 300

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIV 323
             + + +   G + +   V ++ +  GV P    +   + GL    ++ EA++ LGE++ 
Sbjct: 301 TTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVE 360

Query: 324 SGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKS 381
                 D+ V   L+     + D  +A      MI +  +PT       L +N CK N  
Sbjct: 361 RYIAPKDNAVFMKLMSCQCKAGDLDAAGDVLKAMI-RLSIPTEAGHYGVLIENFCKANLY 419

Query: 382 -------DELVEVYKVL-SANDYFTDM-----ESYNVMVSFLCTSGRLREAYGVIQEMKR 428
                  D+++E   VL   N Y T++      +YN+M+ +LC  GR  +A    +++ +
Sbjct: 420 DKAEKLLDKMIEKEIVLRQKNAYETELFEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMK 479

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG+   VSF N+L+    +E     A ++   M   G + +  +Y +LI  +   GE   
Sbjct: 480 KGVQDSVSF-NNLICGHSKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPAD 538

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A      MLE G  P+++ Y S++E L  +  +Q A  V    V   V     ++S  + 
Sbjct: 539 AKTALDGMLESGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLE 598

Query: 549 SLCRRGHFLVATK-----LLRGLSSDLGH 572
           +L  RGH   A       +L G   D  H
Sbjct: 599 ALLMRGHVEEALGRIHLLMLNGCEPDFDH 627



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 120/538 (22%), Positives = 223/538 (41%), Gaps = 59/538 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ +L  + LS +++      + +K   I  D   Y  +I    + K  ++A  +F E+
Sbjct: 229 TYNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEM 288

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K    DI P + +  ++L    + G ID+ALK+F+EM   GV+ + + F   +   C+  
Sbjct: 289 K--GRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAE 346

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           K+ +   +L E+ +R  +  + +V   L+    CK   ++ A  VL  + IR   P    
Sbjct: 347 KMAEARDVLGEMVERYIAPKDNAVFMKLM-SCQCKAGDLDAAGDVLKAM-IRLSIPTEAG 404

Query: 264 -YRIVAEEF----------KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            Y ++ E F          KL+  + E+E+VL++K         N Y   +         
Sbjct: 405 HYGVLIENFCKANLYDKAEKLLDKMIEKEIVLRQK---------NAYETEL--------- 446

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNL 371
                         F ++    N +IG +        A  FF  +++KG   ++S  +NL
Sbjct: 447 --------------FEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQDSVS-FNNL 491

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                K    D   E+ K++       D +SY +++      G   +A   +  M   G 
Sbjct: 492 ICGHSKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGH 551

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+ S Y S+ME+   +  ++ A ++   M   G   N+   + ++      G +E AL 
Sbjct: 552 LPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMRGHVEEALG 611

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
             H ++  G  PD   +  LL  LC++    AA ++ +  +  D ++  SI    + +L 
Sbjct: 612 RIHLLMLNGCEPD---FDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKVLDALL 668

Query: 552 RRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604
             G  L A  +L     +G S+D    D  +  L    + ++ ++    IK      P
Sbjct: 669 AAGKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIKGTDGGPP 726


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 181/439 (41%), Gaps = 39/439 (8%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL+          A  +F           +I +   I  FC+     Q   +LDE+ 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           KR   ++  + +   II G C   RV+ A     +++ R C P  I Y I+ +       
Sbjct: 61  KR--GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSAR 117

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + +  ++L+   + G AP    Y   I G       C+   + E                
Sbjct: 118 ISDASLILEDMIEAGCAPNVVTYNTLINGF------CKLGNMDE---------------- 155

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       A+V FN M+E    P + T + L    CK+ +  +  ++ + +     
Sbjct: 156 ------------AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +  +YN ++  L  SG+  +A+ + Q M R+   P    +N +++  C+   L  A +
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+  M   GC  ++ TYNI+IS       I+ A +L   M E G  PD  TY S++ GLC
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 323

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
           + + +  A+EV+    N    L     ST +  LC+      A KLLR +  +    D  
Sbjct: 324 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV 383

Query: 575 SHVILLKSLADAREVEMAI 593
           ++ IL+     A +++ ++
Sbjct: 384 AYTILIHGFCKADQLDKSL 402



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 188/426 (44%), Gaps = 20/426 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++     +R       +L +++   I   ++VY  II  L        A   + +
Sbjct: 34  ITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRD 93

Query: 145 VKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++ +C    P +     L+  L     I +A  + ++M   G   + + +   I  FC+ 
Sbjct: 94  MQRHC---APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             + + + + +++   ENS         ++I G+CK +R ++  K+L E+    C+P+FI
Sbjct: 151 GNMDEAVVLFNQML--ENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE------AK 316
            Y  + +     G   +   + +   +    P       F   L+++   C+      A 
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS-----HFTFNLMIDM-FCKVGQLDLAY 262

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL +++       D    N +I G+  +     A      M E G  P + T +++   L
Sbjct: 263 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 322

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK ++ DE  EVY+VL    YF D+ + + ++  LC S RL +A  +++EM+R G  PDV
Sbjct: 323 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDV 382

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  L+   C+ D L  +   + +M   GC   + TY+I+I K  +   +     L   
Sbjct: 383 VAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKT 442

Query: 496 MLEKGV 501
           MLE+GV
Sbjct: 443 MLERGV 448



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 195/408 (47%), Gaps = 8/408 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALK 175
           DS  Y  +I    + ++ Q+A+ + +E++     I P   + N+++  L  +G +D+AL 
Sbjct: 32  DSITYSTLINGFCKARDFQQAYRLLDEMEK--RGIVPHNAVYNTIIKGLCDNGRVDSALV 89

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            + +M  R    S I + + +   C++A++     +L+++   E       V    +I+G
Sbjct: 90  HYRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMI--EAGCAPNVVTYNTLING 146

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           FCK   ++EA  + +++    C PD   Y I+ + +       +   +L++  K G  P 
Sbjct: 147 FCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPN 206

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFN 354
              Y   +  L+   +  +A  L ++++           N +I     +     A   F 
Sbjct: 207 FITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 266

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M ++G +P + T + +    C+ N+ D+  ++ + ++      D+ +YN +VS LC + 
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EAY V + ++  G   DV   ++L++  C+   L  A+KL  +M  +G + ++  Y 
Sbjct: 327 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           ILI  F +  +++ +L  F  ML+KG  P   TY+ +++ LC+   ++
Sbjct: 387 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVR 434



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 200/453 (44%), Gaps = 19/453 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           ++ + ++ K  Q+A+ +F      C    P+    ++L+           A ++ DEM  
Sbjct: 4   LLSAFVRKKKAQEAYDLFK--NHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           RG+      +   I   C+N   G+V S L   R  +       +   +++   CK  R+
Sbjct: 62  RGIVPHNAVYNTIIKGLCDN---GRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARI 118

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            +A  +L+++    C P+ + Y  +   F  +G++ E  V+  +  +   +P    Y   
Sbjct: 119 SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNIL 178

Query: 303 ILGLIVERRICE-AKELGEVIVSG---KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           I G   + R  + AK L E++  G    F   + ++++L+ S   ID   A      M+ 
Sbjct: 179 IDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID---AFNLAQMMLR 235

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +   P+  T + +    CK  + D   E++++++      D+ +YN+M+S  C + R+ +
Sbjct: 236 RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 295

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +++ M   G  PDV  YNS++   C+   +  A ++++ +   G   ++ T + LI 
Sbjct: 296 ARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 355

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              +   ++ A +L   M   G APD   YT L+ G C+   L  +   F++ ++   + 
Sbjct: 356 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 415

Query: 539 ARSILSTFMISLC-----RRGHFLVATKLLRGL 566
                S  +  LC     R G  L+ T L RG+
Sbjct: 416 TVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 184/442 (41%), Gaps = 36/442 (8%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           V+  +I + +Q +  ++    F  ++     +    CNSLL  L    +++ A ++  E+
Sbjct: 50  VFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREV 109

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G+E +     + +   C++ K   V S L E+    N +    V    +I  +C+  
Sbjct: 110 VRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEG--NGIYADMVTYNTLIGAYCREG 167

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            +EEAF++++ +  +  KP    Y  +       G     + +L +   +G++P T  Y 
Sbjct: 168 LLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 227

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             ++         EAKE+                                  F  M+ +G
Sbjct: 228 TLLVESCRRDNFSEAKEI----------------------------------FGEMLRQG 253

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            VP L + S+L     +    D+ +  ++ +       D   Y V++   C +G + EA 
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  EM  +G   DV  YN+++   C+E +L  A KL+D+M   G   +  T+  LI   
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            + G +  AL LF  M ++ + PD   Y +L++G C+   ++ A E+++  ++  +    
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNH 433

Query: 541 SILSTFMISLCRRGHFLVATKL 562
                 + + C  GH   A +L
Sbjct: 434 ITYGILINAYCSVGHVSEAFRL 455



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 199/429 (46%), Gaps = 15/429 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S  +Y++I+  L    +      +L ++    ++ D++ Y  ++    +  N  +A  +F
Sbjct: 187 SLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIF 246

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+    + + P++ +  SL+AV + + ++D AL  F +M   G+    + + V +  +C
Sbjct: 247 GEMLR--QGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRE 256
            N       +ML+ ++ R+  +  G V+ V+    I++G CK K + +A K+ DE+  R 
Sbjct: 305 RNG------NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PDF  +  +       G++ +   +     +  + P    Y   I G      + +A 
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL + ++S K   +      LI +  S+   S A   ++ MIEKG  PTL T + + K  
Sbjct: 419 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 478

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+   S +  E    + A     D  SYN +++       + +A+  I +M+++GL PD+
Sbjct: 479 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDI 538

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN +M   CR+  ++ A+ +  +M   G + +  TY  LI+       +  A R    
Sbjct: 539 ITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDE 598

Query: 496 MLEKGVAPD 504
           ML++G APD
Sbjct: 599 MLQRGFAPD 607



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 164/391 (41%), Gaps = 38/391 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL           A ++F EM  +GV    + F   I  F  N  L Q L    +++K
Sbjct: 227 NTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKK 286

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++  +VI  +++HG+C+   + EA K+ DE+  + C  D IAY  +          
Sbjct: 287 F--GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN-------- 336

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                                      GL  E+ + +A +L + +V      D      L
Sbjct: 337 ---------------------------GLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 369

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     +   A+  F  M ++   P +   + L    CK  + ++  E++  + +   
Sbjct: 370 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 429

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F +  +Y ++++  C+ G + EA+ +   M  KG+ P +   N++++  CR      A +
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADE 489

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
              +M A G + +  +YN LI+ F     ++ A    + M ++G+ PD  TY  ++ G C
Sbjct: 490 FLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFC 549

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           ++  +Q A  V  K +   +   RS  +  +
Sbjct: 550 RQGRMQEAELVLRKMIEKGINPDRSTYTALI 580



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 158/360 (43%), Gaps = 15/360 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +S+ S++   S +R ++      + +K   +  D+ +Y  ++    +  N  +A  + +E
Sbjct: 259 VSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDE 318

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N++L  L  +  + +A K+FDEM  RG       F   I   C++  
Sbjct: 319 MLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 378

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + + LS+   + +R    I   ++A   +I GFCK   +E+A ++ D +  R+  P+ I 
Sbjct: 379 MTKALSLFGTMTQRN---IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHIT 435

Query: 264 YRIVAEEFKLMGSVFER----EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-L 318
           Y I+   +  +G V E     +V+++K    G+ P        I G        +A E L
Sbjct: 436 YGILINAYCSVGHVSEAFRLWDVMIEK----GIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           G +I  G    D    N LI G V   +   A ++ N M ++G +P + T + +    C+
Sbjct: 492 GRMIAKG-VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCR 550

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + +  E   V + +       D  +Y  +++   T   L EA+    EM ++G  PD  F
Sbjct: 551 QGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDVF 610



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 22/219 (10%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI +  V  +  +  L  ++C    ++ LV                 +++++     + +
Sbjct: 21  MIRRSGVSRVEVVEALVSSMCGNCGTNNLV-----------------FDLLIRTYVQARK 63

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           LRE     + ++ KG    ++  NSL+    + D +  A ++  ++  SG   N+ T NI
Sbjct: 64  LREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNI 123

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +++   + G+ +        M   G+  D  TY +L+   C+E  L+ AFE+ N   +  
Sbjct: 124 MVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKG 183

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +  +    +  +  LC++G +  A  +L      GLS D
Sbjct: 184 LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/538 (23%), Positives = 212/538 (39%), Gaps = 58/538 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFII 126
           L  F +++  P     PL  H++   L LS   + A+   L   +   +   SS +  ++
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            +         A   F+ +          + N++L  L   G I  AL +++ M   G  
Sbjct: 145 AAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCA 204

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +   + V +   C+    G  L M DE+  R   M N  +  VL+    C   +++EA 
Sbjct: 205 PNRATYNVLMDGLCKQGMAGDALKMFDEMLDR-GIMPNVKIYTVLL-SSLCNAGKIDEAV 262

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVLKKKRKLGVAPRTNDYREFI 303
           ++L  ++ + C PD + Y         +G V   F+R V+L+     G A     Y   I
Sbjct: 263 QLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG---GFALGLKGYSCLI 319

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            GL   RR  E     + ++    + D  +   +I G   +     A+ F + M +KG V
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P     + + K LC     +    +   +  N+   D  +  +M+  LC  G + EA  +
Sbjct: 380 PDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM--------------------- 461
             EM   G DP V  YN+L++   RE  L  A+ L+ +M                     
Sbjct: 440 FDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRD 499

Query: 462 ---------------------------FASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
                                        SG   ++ TYN LI+   +   ++GA+RLF 
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            +  KG++PD  TY +L++GL +      A  +F   +      + SI ++ M SLCR
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCR 617



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 193/473 (40%), Gaps = 24/473 (5%)

Query: 75  SQQPNFTHSPLS--YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           S+   F   P +  Y++ILK+L  S  I    ++  ++       + + Y  ++  L + 
Sbjct: 161 SRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQ 220

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                A  +F+E+         +I   LL+ L + G ID A+++   M  +G     + +
Sbjct: 221 GMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTY 280

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
             F+   C+  ++ +    L  V  ++     G      +I G  + +R +E F     +
Sbjct: 281 NAFLSGLCKVGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R   PD + Y I+       G + +    L   +K G  P T  Y   +  L     +
Sbjct: 339 LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDL 398

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLS 369
             A  L   ++     +D      +I  +     +D   A+  F+ M E G  PT+ T +
Sbjct: 399 ERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD--EAMQIFDEMGEHGCDPTVMTYN 456

Query: 370 NLSKNLCKRNKSDELVEVYK--------------VLSANDYFTDMESYNVMVSFLCTSGR 415
            L     +  + +E   ++                L AN    D ES   +V  +C SG+
Sbjct: 457 ALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQ-VRDSESLRKLVHDMCQSGQ 515

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +AY +++ +   G+ PDV  YN+L+   C+   L  A +L+ ++   G S +  TY  
Sbjct: 516 VLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LI           A+ LF N+L+ G +P  + Y S++  LC+   L  A  ++
Sbjct: 576 LIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 198/509 (38%), Gaps = 71/509 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++ L  L    ++N     L  ++     L    Y  +I  L Q +   + F  +  
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     +I P++    + +   A  G I++AL   D M  +G    T  +   +   C++
Sbjct: 338 MLE--RNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDH 395

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  ++  E+   +N+++  S    ++I G CK   V+EA ++ DE+    C P  +
Sbjct: 396 GDLERAHTLRSEML--QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVM 453

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F   G + E   +L  K ++G  P    +    LG    R            
Sbjct: 454 TYNALIDGFYREGRL-EEARMLFHKMEMGNNPSL--FLRLTLGANQVR------------ 498

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  D + L  L+  +  S     A      +I+ G VP + T + L   LCK    
Sbjct: 499 -------DSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNL 551

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  V ++K L       D  +Y  ++  L  + R  +A  + Q + + G  P +S YNS+
Sbjct: 552 DGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSM 611

Query: 442 MEACCREDLLRPAKKLW---------------------------------------DQMF 462
           M + CR   L  A  LW                                       DQ +
Sbjct: 612 MRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEY 671

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            S  S     Y I +    +V   + ALR+FH + E G+         L+  LC + NL 
Sbjct: 672 GSISS---NPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLN 728

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLC 551
           AA ++   +++  ++L++ + +  +  LC
Sbjct: 729 AAVDIMLYALSKSIILSQPVGNRLLRWLC 757



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/421 (19%), Positives = 163/421 (38%), Gaps = 57/421 (13%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL F +   ++  F      Y+++LK L     +    ++  ++  N + LDS+    +I
Sbjct: 366 ALSFLD-VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD--EMSHRG 184
             L +     +A  +F+E+  +  D      N+L+     +G ++ A  +F   EM +  
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484

Query: 185 VEFSTIGFGV-----------FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LI 232
             F  +  G             +   C++   GQVL     +R   +S +   V+    +
Sbjct: 485 SLFLRLTLGANQVRDSESLRKLVHDMCQS---GQVLKAYKLLRSIIDSGVVPDVVTYNTL 541

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I+G CK + ++ A ++  EL+++   PD I Y  + +         +  ++ +   + G 
Sbjct: 542 INGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGS 601

Query: 293 APRTNDYREFILGLIVERRICEAKEL--------------GEVIVSGKFTIDDDVLNALI 338
           +P  + Y   +  L   +++ +A  L               EV+ +    I+D  L+  +
Sbjct: 602 SPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGV 661

Query: 339 ----------GSVSSIDPRS--------------AIVFFNFMIEKGRVPTLSTLSNLSKN 374
                     GS+SS +P +              A+  F+ + E G   T +  + L   
Sbjct: 662 RELIKIDQEYGSISS-NPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINY 720

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC     +  V++     +          N ++ +LC   R ++A  +   M   G D D
Sbjct: 721 LCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRMHLVGYDMD 780

Query: 435 V 435
           V
Sbjct: 781 V 781


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 222/476 (46%), Gaps = 18/476 (3%)

Query: 97  SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK----FNCEDI 152
           +R  +A+D V +++     T D   Y  +I  L   K +Q+A  +   +     +NC   
Sbjct: 140 NRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCS-- 197

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P +   N+++     +G +D A  +F EM  +G+    + +   I   C+   + + ++
Sbjct: 198 -PNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVA 256

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +L  +  +   ++  +    ++I G+C   ++EEA ++L ++     +PD + Y ++ + 
Sbjct: 257 ILQHMFDK--GVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQY 314

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +G   E   V     + G  P +  Y   + G   +  + + ++L ++++      +
Sbjct: 315 YCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE 374

Query: 331 DDVLNALIGSVS---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
               N LI + +   ++D   A+  F  M + G  P + + S +   LCK  + ++ V  
Sbjct: 375 HRAFNILICAYAKHGAVD--KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYH 432

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  + +     ++ S+  ++  LC+ G  ++   +  EM  +G+ PD  F N++M+  C+
Sbjct: 433 FNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCK 492

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  +  A+  +D +   G   ++ +YN LI  +  VG+++ +++    M+  G+ PD+ T
Sbjct: 493 EGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWT 552

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKL 562
           Y SLL G  +   ++ A  ++ +    DV    +I S  M+  L + G  + A +L
Sbjct: 553 YNSLLNGYFKNGRVEDALALYREMFRKDVKFC-AITSNIMLHGLFQAGRIVAAREL 607



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 184/438 (42%), Gaps = 24/438 (5%)

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN-------ALKMFDEMSHRGVEFS 188
           + A ++F+E+            NS+L V+A      +       A+ +F+ M   GV   
Sbjct: 31  EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMM 90

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA--- 245
               G+ I  FC   +L    +      K    + N  V    +I G C G R ++A   
Sbjct: 91  AAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQN--VTLNQLIKGLCDGNRTDDAMDM 148

Query: 246 -FKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            F+ + EL      PD  +Y  + +     K      E  + +        +P    Y  
Sbjct: 149 VFRRMPELGY---TPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNT 205

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I G   E  + +A  L   ++      D    N+LI G   +     A+     M +KG
Sbjct: 206 VIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKG 265

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P   T + + +  C   + +E V + K +S +    D+ +Y++++ + C  GR  EA 
Sbjct: 266 VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEAR 325

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V   M RKG  P+ + Y+ L+     +  L   + L D M   G     + +NILI  +
Sbjct: 326 SVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAY 385

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           ++ G ++ A+  F  M + G+ PD  +Y++++  LC+   ++ A   FN+ V+    L+ 
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEG--LSP 443

Query: 541 SILS--TFMISLCRRGHF 556
           +I+S  + +  LC  G +
Sbjct: 444 NIISFTSLIHGLCSIGEW 461



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 205/454 (45%), Gaps = 18/454 (3%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
            Q+PN T     YH +L   +    +  +  +L  +  + I  +   +  +I +  +   
Sbjct: 335 GQKPNST----IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGA 390

Query: 135 TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             KA + F E++ N   + P++ +  +++ +L   G +++A+  F++M   G+  + I F
Sbjct: 391 VDKAMTAFTEMRQN--GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISF 448

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I   C   +  +V  +  E+  R   +   ++    I+   CK  RV EA    D +
Sbjct: 449 TSLIHGLCSIGEWKKVEELAFEMINR--GIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMV 506

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
                KPD ++Y  + + +  +G + E    L +   +G+ P +  Y   + G     R+
Sbjct: 507 IHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRV 566

Query: 313 CEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            +A    +E+    V       + +L+ L  +   +  R     +  M+++G    + T 
Sbjct: 567 EDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARE---LYMKMVDRGTQLRIETY 623

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   LC+ +  DE + +++ L + ++  D+ +++++++ L   GR+ EA  +   M  
Sbjct: 624 NTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVL 683

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G  PDV  Y+ ++++   E LL  +  L+  M  +GC+ +    NI++ +  E G++  
Sbjct: 684 RGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRR 743

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A      + EK  + +A+T  +LL  +  E   Q
Sbjct: 744 AGTYLTKIDEKNFSLEAST-AALLIPIVSEKKYQ 776



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 196/443 (44%), Gaps = 12/443 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ +++      Q+     +LK++  + +  D   Y  +I    +     +A SVF+ +
Sbjct: 272 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSM 331

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
               +     I + LL   A+ G + +   + D M   G+ F    F + I  + ++  +
Sbjct: 332 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAV 391

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            + ++   E+R  +N +    V    +IH  CK  RVE+A    +++      P+ I++ 
Sbjct: 392 DKAMTAFTEMR--QNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFT 449

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +      +G   + E +  +    G+ P        +  L  E R+ EA++  ++++  
Sbjct: 450 SLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHI 509

Query: 326 KFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
               D    N LI     V  +D   +I   + M+  G  P   T ++L     K  + +
Sbjct: 510 GVKPDVVSYNTLIDGYCFVGKMD--ESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVE 567

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + + +Y+ +   D      + N+M+  L  +GR+  A  +  +M  +G    +  YN+++
Sbjct: 568 DALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVL 627

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C    +  A ++++ + +     +++T++I+I+   +VG I+ A  LF  M+ +G  
Sbjct: 628 GGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPV 687

Query: 503 PDATTYTSLL-----EGLCQETN 520
           PD  TY+ ++     EGL +E++
Sbjct: 688 PDVITYSLMIKSHIEEGLLEESD 710


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/540 (20%), Positives = 227/540 (42%), Gaps = 43/540 (7%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S  LGFF+  +    F H+  +Y  +++ L    +++ +  +L+Q+K++ I     ++  
Sbjct: 55  SSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC 114

Query: 125 IIPSLIQGKNTQKAFSVFNEV-KFNCED--------------------IGPEICNS---- 159
           II    +  + ++A  +F  + +F C+                     I P   N     
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 160 ----------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                     LL  L  +  +D A K+F EMS++G     + +   +   C+  K+    
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI---- 230

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
              D+ R+          +   +I G CK  R+E A K+L E+      P+ ++Y  +  
Sbjct: 231 ---DDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
              + G+V     +  +    G     + +   I G  +  ++ EA +L ++++      
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +    N LI G  S+     A+   + M   G +P ++T S L     K        E +
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + ++    ++ +Y  MV  LC +    +A  ++++M  +G  P+   +N+ ++  C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A KL ++M   GC  N+ TYN L+     + + E A  LF  +  + + P+  TY
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++L G  +   +  A ++F K++           +T + + C++G   +A +L+  +SS
Sbjct: 528 NTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 174/424 (41%), Gaps = 6/424 (1%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S   Y++++  +    +I     +L ++  N +  +   Y  II SL    N + AF
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           ++F ++     D        L+      G +  AL ++  M   G E + + +   I   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C N  L + L + D++ +R   + N +  ++LI  GF K   +  A +  + +    C+P
Sbjct: 360 CSNGSLEEALQVCDQM-QRSGCLPNVTTYSILI-DGFAKSGDLVGASETWNRMISHGCRP 417

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKEL 318
           + + Y  + +      S+F++   L +K  L G  P T  +  FI GL    R+  A +L
Sbjct: 418 NVVTYTCMVDVL-CKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL 476

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E +       +    N L+ ++  ++    A   F  +  +   P L T + +     +
Sbjct: 477 LERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVS 436
                E ++++          D  +YN M+   C  G+++ A  +++ +   K   PD+ 
Sbjct: 537 AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDII 596

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y SL+   C    +  A    D+    G   N  T+N L+  F +     G + +  ++
Sbjct: 597 TYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDI 656

Query: 497 LEKG 500
           L KG
Sbjct: 657 LRKG 660



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%)

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           RN S  L     + ++N +     +Y VM+  L     +     ++Q+MK  G++     
Sbjct: 52  RNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL 111

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +  ++    R      A K++ ++   GC   ++ YN L+       + +    L+ NM 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           + G+ P+  TY  LL+ LC+   + AA ++F +  N          +T + SLC+ G
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG 228


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 207/451 (45%), Gaps = 8/451 (1%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           ++++   L +++    ++ K+   + I     +Y  +I    Q   TQKA+ +  ++   
Sbjct: 302 TLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQM--T 359

Query: 149 CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            + + P     + +L  L +D    +A+ +F+EM+  G+      +   I   C+  KL 
Sbjct: 360 GQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLR 418

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + L++ D ++K        +  ++L+  G+CK   ++EA K+  E+ +   KP+ + Y  
Sbjct: 419 EALNLFDRMKKAGVKPSINTYNSLLM--GYCKKGCMDEAVKLYSEMPMEGFKPNVVTYIT 476

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +   +           +L + ++ GV+     Y   I G+ +  R+CE   + +  +S  
Sbjct: 477 LMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEG 536

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F       N++I G V +    SA   +  M EKG  P + T ++     C+   SD  +
Sbjct: 537 FIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMAL 596

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++   +       D+ +YN +++  C  G +  A  ++  + + GL P+   YNSL+   
Sbjct: 597 KMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGY 656

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
              ++++   K ++ M   G   +  TY  LI  FS+ G +  AL L+  M+ KG  PDA
Sbjct: 657 KNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDA 716

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            T+T+L  GLC+  ++  A ++  +    DV
Sbjct: 717 FTFTALTHGLCRSGDIDGAKKLLEEMRRLDV 747



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/459 (21%), Positives = 203/459 (44%), Gaps = 26/459 (5%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA----SDGYIDN 172
           +D+ ++  ++ + ++    + A  +F+E+     +I P+     LA+ A     DG    
Sbjct: 190 VDAWMFDALMSACLKEGMHEDAVRLFDEMP--GAEIDPDQRVYALAITALCKLGDG--GR 245

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           AL+M  EM   G +     +   +    +  ++ + L + DE+R     M    ++A  +
Sbjct: 246 ALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKM--DVIVATTL 303

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           + G+C  + V  A  +  E       P  + Y ++      +G   +   + ++    G+
Sbjct: 304 MRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGL 363

Query: 293 APRTNDYREFILGLIVERR----ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
            P T +    + GL+ +RR    +C  +E+ +  +   FT +    N +     +   R 
Sbjct: 364 LPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYN----NLIHWHCQAHKLRE 419

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M + G  P+++T ++L    CK+   DE V++Y  +    +  ++ +Y  ++ 
Sbjct: 420 ALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMR 479

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                     AY ++ EMK+ G+  +   YN L+   C  D +     +     + G   
Sbjct: 480 GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIP 539

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TYN +I+ F + G +  A  ++  M EKG+ P+  TYTS ++G C+      A ++ 
Sbjct: 540 TMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKML 599

Query: 529 N----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           N    + +  D++   ++++ F    C+ G+   A +LL
Sbjct: 600 NDVRRRGLQPDIVAYNALINGF----CQEGNMSHALQLL 634



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 16/322 (4%)

Query: 168 GYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           GYI     DNA  + DEM   GV  +   + V I   C   ++ +V  ML      ++ M
Sbjct: 480 GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGML------KSFM 533

Query: 223 INGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
             G +  ++    II+GF K   +  AF V  ++R +   P+ I Y    + +   G   
Sbjct: 534 SEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSD 593

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
               +L   R+ G+ P    Y   I G   E  +  A +L  +++      +  V N+LI
Sbjct: 594 MALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLI 653

Query: 339 GSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
               +++    +  F+  MI+ G V   ST + L     K       +E+Y  + A  Y 
Sbjct: 654 TGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYI 713

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  ++  +   LC SG +  A  +++EM+R  + P+V  YN L+    R+  L+ A +L
Sbjct: 714 PDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRL 773

Query: 458 WDQMFASGCSGNLKTYNILISK 479
            D+M   G   +  TY+IL+SK
Sbjct: 774 HDEMLNMGIQPDDTTYDILVSK 795



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/524 (20%), Positives = 214/524 (40%), Gaps = 80/524 (15%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN----SLLAVLASDGY 169
           +I  D  VY   I +L +  +  +A  +  E+K    ++G + C+    +++ VL   G 
Sbjct: 222 EIDPDQRVYALAITALCKLGDGGRALRMLREMK----EVGFDTCDFTYRTMVDVLVKTGR 277

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ++ AL++ DEM   G +   I     +  +C   ++G  L++  E  K  + ++   V+ 
Sbjct: 278 MEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLK--DGIVPTKVMY 335

Query: 230 VLIIHGFCKGKRVEEAFKV-----------------------LDELRIRECK-------- 258
            ++I G  +    ++A+++                       L++ R ++          
Sbjct: 336 GVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMAD 395

Query: 259 ---PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              PD   Y  +         + E   +  + +K GV P  N Y   ++G   +  + EA
Sbjct: 396 SGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEA 455

Query: 316 KEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L  E+ + G        +  + G ++  D  +A    + M + G      T + L   
Sbjct: 456 VKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLING 515

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           +C  ++  E+  + K   +  +   M +YN +++    +G +  A+ V Q+M+ KGL P+
Sbjct: 516 ICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPN 575

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  Y S ++  CR      A K+ + +   G   ++  YN LI+ F + G +  AL+L  
Sbjct: 576 IITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLV 635

Query: 495 NMLEKGVAP-----------------------------------DATTYTSLLEGLCQET 519
            +L+ G+AP                                   D +TYT+L++G  ++ 
Sbjct: 636 ILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDG 695

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           N+  A E++++ +    +      +     LCR G    A KLL
Sbjct: 696 NVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLL 739



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 167/403 (41%), Gaps = 17/403 (4%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALK 175
           D   Y  +I    Q    ++A ++F+ +K     + P I   NSLL      G +D A+K
Sbjct: 400 DVFTYNNLIHWHCQAHKLREALNLFDRMKK--AGVKPSINTYNSLLMGYCKKGCMDEAVK 457

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           ++ EM   G + + + +   +  +          ++LDE++  +N +        ++I+G
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMK--QNGVSCNDYTYNVLING 515

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGV 292
            C   RV E   +L         P  + Y  +   F    +MGS F    V ++ R+ G+
Sbjct: 516 ICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAF---TVYQQMREKGL 572

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI-GSVSSIDPRSA 349
            P    Y  FI G    R  C    L  +    +  +  D++  NALI G     +   A
Sbjct: 573 PPNIITYTSFIDGYC--RTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHA 630

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +     +++ G  P     ++L       N   E+ + Y+ +       D  +Y  ++  
Sbjct: 631 LQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDG 690

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G +  A  +  EM  KG  PD   + +L    CR   +  AKKL ++M       N
Sbjct: 691 FSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPN 750

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           +  YN+LI+ +    +++ A RL   ML  G+ PD TTY  L+
Sbjct: 751 VFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 20/260 (7%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P +A   +  M+ +G VP + + ++L     + + + + + ++  +    Y  D   ++ 
Sbjct: 138 PSAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDA 197

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++S     G   +A  +  EM    +DPD   Y   + A C+      A ++  +M   G
Sbjct: 198 LMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVG 257

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
                 TY  ++    + G +E ALR+   M + G   D    T+L+ G C    +  A 
Sbjct: 258 FDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNAL 317

Query: 526 EVFNKSVNHDVMLARSILSTFM------------ISLCRR--GHFLVATK-----LLRGL 566
            +F +++   ++  + +    +              LCR+  G  L+ +      +L+GL
Sbjct: 318 NLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGL 377

Query: 567 SSDLGHSDSHVILLKSLADA 586
            +D    D+ V L + +AD+
Sbjct: 378 LNDRRWKDA-VCLFEEMADS 396


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 14/365 (3%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 205

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALI 338
           +   + G   +P    Y   I G   E  + +A    KE+ +  +   F     V++AL 
Sbjct: 206 RMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               ++D   A  F   M+ KG +P   T +NL        +  E V V+K +       
Sbjct: 266 -KARAMDKAEA--FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILP 322

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ ++N+++  LC  G+++EA  V   M  KG +PDV  YN ++     +  L     L+
Sbjct: 323 DVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D M   G +  + T+N+LI  ++  G ++ A+ +F+ M + GV P+  TYT+++  LC+ 
Sbjct: 383 DLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRI 442

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
             +  A E FN+ ++  V   +      +   C  G  L A +L+  + ++  H D  ++
Sbjct: 443 GKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD--IV 500

Query: 579 LLKSL 583
           L  S+
Sbjct: 501 LFSSI 505



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/536 (20%), Positives = 224/536 (41%), Gaps = 21/536 (3%)

Query: 13  ISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPS--LVARVINPYLLTHH-SLALG 69
           I++A  SA+ R+ PA              G R  LSP+    A +++     H   LAL 
Sbjct: 74  IARAPSSAACRSGPALAVALFNRAASRAQGPR-VLSPTSHTYAILMDCCTRAHRPELALA 132

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           FF    +        ++ H +       R   A+D +L +        D   Y  ++ SL
Sbjct: 133 FFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSL 192

Query: 130 I-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVE 186
             QGK+ Q A  +   +        P++   N+++     +G ++ A  +F EM  RG+ 
Sbjct: 193 CDQGKSGQ-ADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP 251

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFCKGKR 241
              + +   +   C+   + +  + L +       M+N  V+        +I+G+    +
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQ-------MVNKGVLPNNWTYNNLIYGYSSTGQ 304

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA +V  E+R +   PD + + ++       G + E   V       G  P    Y  
Sbjct: 305 WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKG 360
            + G   +  + +  +L ++++           N LI + ++      A++ FN M + G
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + +   LC+  K D+ +E +  +       D  +Y+ ++   CT G L +A 
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +I E+   G+  D+  ++S++   C+   +  A+ ++D     G       Y++L+  +
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F + +   +
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 187/439 (42%), Gaps = 15/439 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVF 142
            SY  +LKSL    +    D +L+ +          V  Y  +I    +  +  KA  +F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+      I P+    +S++  L     +D A     +M ++GV  +   +   I+ + 
Sbjct: 243 KEMVQ--RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  + + +  E+R++  S++   V   +++   CK  +++EA  V D + ++   PD
Sbjct: 301 STGQWKEAVRVFKEMRRQ--SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPD 358

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAK 316
             +Y I+   +   G + +   +       G+AP    +   I       ++++ +    
Sbjct: 359 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFN 418

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E+ +  V         V+ AL   +  +D   A+  FN MI++G  P       L +  C
Sbjct: 419 EMRDHGVKPNVLTYTTVIAALC-RIGKMD--DAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
                 +  E+   +  N    D+  ++ +++ LC  GR+ +A  +       GL P   
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAV 535

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ LM+  C    +  A +++D M ++G   N   Y  L++ + ++G I+  L LF  M
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM 595

Query: 497 LEKGVAPDATTYTSLLEGL 515
           L+KG+ P    Y  +++GL
Sbjct: 596 LQKGIKPSTILYNIIIDGL 614



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 42/248 (16%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV----------------YK 389
           P  A+ FF  ++  G    +   ++L K  C+  ++DE +++                Y 
Sbjct: 127 PELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 186

Query: 390 VL-----------SANDYF-----------TDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           +L            A+D              D+ +YN ++      G + +A  + +EM 
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 246

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           ++G+ PD   Y+S++ A C+   +  A+    QM   G   N  TYN LI  +S  G+ +
Sbjct: 247 QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWK 306

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
            A+R+F  M  + + PD  T+  L+  LC+   ++ A +VF+    K  N DV     +L
Sbjct: 307 EAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 544 STFMISLC 551
           + +    C
Sbjct: 367 NGYATKGC 374



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 170/400 (42%), Gaps = 37/400 (9%)

Query: 150 EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           + I P IC  N L+   A+ G +D A+ +F+EM   GV+ + + +   I   C   K+  
Sbjct: 388 DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKM-- 445

Query: 208 VLSMLDEVRKRENSMINGSVIAV-----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                D+  ++ N MI+  V         +I GFC    + +A +++ E+       D +
Sbjct: 446 -----DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIV 500

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  +      +G V + + +      +G+ P    Y   + G  +  ++ +A  + + +
Sbjct: 501 LFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560

Query: 323 VSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           VS     +D V   L+     +  ID    +  F  M++KG  P+ + L N+        
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRID--EGLSLFREMLQKGIKPS-TILYNII------- 610

Query: 380 KSDELVEVYKVLSANDYFTDME---------SYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
             D L E  + + A   F +M          +Y++++  L  +    EA  + +E++   
Sbjct: 611 -IDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  D+   N+++    +   +  AK L+  +  SG    + TY+I+I+   + G +E A 
Sbjct: 670 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +F +M   G  PD+     ++  L ++  +  A    +K
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSK 769


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 210/467 (44%), Gaps = 24/467 (5%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  FN    Q N T +   ++ IL SL  S+  + + S+ +Q++   I  +   +  +I
Sbjct: 52  AVSLFNSLLHQ-NPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILI 110

Query: 127 PSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
               Q      AFSV  ++ K   E   P+I   N+ +      G I  AL   D++   
Sbjct: 111 NCFCQLGLIPFAFSVLAKILKMGYE---PDIITLNTFIKGFCLKGQIHQALNFHDKLVAL 167

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKRV 242
           G     + +G  I   C   K+G+  + L  +R+ +  ++   +V+   +I G  K K V
Sbjct: 168 GFHLDQVSYGTLINGLC---KVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHV 224

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            +AF +  E+  +   PD + Y  +   F ++G + +   +  K     + P    +   
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNIL 284

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           + G   E R+ +AK + ++++      +    N L+ G       +     F  M+++G 
Sbjct: 285 VDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGI 344

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T  +L    C   + ++  +++  +S      ++ SYN+M++  C   ++ +A  
Sbjct: 345 KPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMK 404

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  EM  K + PDV  YNSL++  C+   +  A +L ++M   G   N+ TYN +++   
Sbjct: 405 LFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNA-- 462

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
                     L   + ++G+ P+  T T L++GLCQ   L+AA +VF
Sbjct: 463 ----------LLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVF 499



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 214/476 (44%), Gaps = 29/476 (6%)

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I +     +   A S+FN +      +     N +L  L    +    L +  +M   G+
Sbjct: 40  ISTTFHSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGI 99

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK--RENSMINGSVIAVLIIHGFCKGKRVE 243
             + + F + I  FC+   +    S+L ++ K   E  +I  +      I GFC   ++ 
Sbjct: 100 NPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTF----IKGFCLKGQIH 155

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A    D+L       D ++Y  +      +G       +L++     V      Y   I
Sbjct: 156 QALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVI 215

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRV 362
            G+  ++ + +A +L   +V+ + + D    +ALI     +   + AI  FN MI +   
Sbjct: 216 DGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIK 275

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L    CK  +  +   V  ++   D   ++ ++N +V   C   +++E   V
Sbjct: 276 PDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTV 335

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
              M ++G+ P+V  Y SLM+  C    +  AKK+++ M   G + N+ +YNI+I+ F +
Sbjct: 336 FAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD------V 536
           + +++ A++LF  M  K + PD  TY SL++GLC+   +  AF++ N+   HD      +
Sbjct: 396 IKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEM--HDRGQPPNI 453

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
           +   SIL+  +  L             +G+  ++ H+D+  IL+K L  + ++E A
Sbjct: 454 ITYNSILNALLTKLKD-----------QGIQPNM-HTDT--ILIKGLCQSGKLEAA 495



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 164/351 (46%), Gaps = 21/351 (5%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    +SY +++  L    +  A   +L++V    + L++ +Y  +I  + + K+   AF
Sbjct: 169 FHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAF 228

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            +++E+    + I P++   ++L+      G + +A+ +F++M    ++     F + + 
Sbjct: 229 DLYSEMV--AKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVD 286

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            FC+  +L +  ++LD +  ++    N S    L+  GFCK ++++E   V   +  +  
Sbjct: 287 GFCKEGRLKKAKNVLDMMMIQDIKP-NVSTFNTLV-DGFCKDRKMKEGKTVFAMMMKQGI 344

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP+ + Y  + + + L+  V + + +     + GV    + Y   I G    +++ +A +
Sbjct: 345 KPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMK 404

Query: 318 LGEVIVSGKFTIDDDV-LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           L  + +  K  I D V  N+LI G   S     A    N M ++G+ P + T +++   L
Sbjct: 405 L-FIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL 463

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             + K D+ ++            +M +  +++  LC SG+L  A  V +++
Sbjct: 464 LTKLK-DQGIQ-----------PNMHTDTILIKGLCQSGKLEAARKVFEDL 502



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 124/292 (42%), Gaps = 39/292 (13%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQP-----------NFTHSPLSYHSILKSLS 95
           L   +VA+ I+P ++T+ +L  GFF     +            N      +++ ++    
Sbjct: 230 LYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFC 289

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
              ++    +VL  + +  I  + S +  ++    + +  ++  +VF  +    + I P 
Sbjct: 290 KEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMM--KQGIKPN 347

Query: 156 ICN--SLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           +    SL+     DGY     ++ A K+F+ MS RGV  +   + + I  FC+  K+ + 
Sbjct: 348 VVTYCSLM-----DGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKA 402

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           + +  E+  +   +I   V    +I G CK  ++  AF++++E+  R   P+ I Y  + 
Sbjct: 403 MKLFIEMHHKH--IIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSIL 460

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                         +L K +  G+ P  +     I GL    ++  A+++ E
Sbjct: 461 ------------NALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFE 500


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 207/505 (40%), Gaps = 39/505 (7%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF W   Q     S  +  ++++ L ++R+ N  + VL +V+ ++  L   ++  +
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
                     +K+      ++ +   +     NSL+      GY   AL ++  M   G+
Sbjct: 61  ARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL 120

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
              T  F V                                     +++ F K KRV+  
Sbjct: 121 RPDTYTFNV-------------------------------------LMNAFKKAKRVDSV 143

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
           +K+ +E++ + C P+ I Y I+ +     G V +   V    +  G  P    Y   I G
Sbjct: 144 WKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDG 203

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPT 364
           L     + +A  L E + S        V N+LI G   S    +A   F  M+ KG  P 
Sbjct: 204 LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T ++L   L    ++ E   +++         D+  YNV++  LC S RL EA+ +  
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           E++  GL PDV  +N+LM+  C+   +  A  L   M  +GC+ ++  YN LI    + G
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            +E A +L   M   G  PD  TY +L++  C+   ++ A  +F + ++          +
Sbjct: 384 RVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLF-EEISAKGFANTVTYN 442

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD 569
           T +  LC  G    A KL  G+  +
Sbjct: 443 TILNGLCMAGRVDEAYKLFNGMKQE 467



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/425 (21%), Positives = 172/425 (40%), Gaps = 76/425 (17%)

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           LK+++ ++  L +S Y  +I + ++   TQKA +V+  +  +         N L+     
Sbjct: 77  LKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKK 136

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE------- 219
              +D+  K+F+EM ++    + I + + I   C+   + + L +  +++ R        
Sbjct: 137 AKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFT 196

Query: 220 -NSMING-------------------------SVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             SMI+G                          V+   +IHG  +  R + A K+  E+ 
Sbjct: 197 YTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREML 256

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +  +PD + +  +     + G   E   + ++ R +G A   N Y   I  L   +R+ 
Sbjct: 257 SKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLD 316

Query: 314 EAKEL-GEVIVSGKFTIDDDVLNAL----------------IGSVSSIDPRSAIVFFNFM 356
           EA E+ GE+   G    D    NAL                +G +        +  +N +
Sbjct: 317 EAWEIFGELEEDG-LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTL 375

Query: 357 IE----KGRV----------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I+     GRV                P + T + L    CK  + ++ + +++ +SA   
Sbjct: 376 IDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG- 434

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG----LDPDVSFYNSLMEACCREDLLR 452
           F +  +YN +++ LC +GR+ EAY +   MK++     +DPD   Y +L+    +  L  
Sbjct: 435 FANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSE 494

Query: 453 PAKKL 457
            A  L
Sbjct: 495 LANSL 499



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 120/281 (42%), Gaps = 19/281 (6%)

Query: 349 AIVFFNFM-IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           A  FF ++  ++G VP++   + L + L    + +E  EV   +  + Y      +  + 
Sbjct: 2   AYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELA 61

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
               ++G L ++   ++ M+        S YNSL++A  +    + A  ++  M  SG  
Sbjct: 62  RGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLR 121

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  T+N+L++ F +   ++   +LF  M  +  +P+  TY+ L++ +C+   ++ A +V
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587
           F        M +R          CR   F   T ++ GL    GH D    L + +    
Sbjct: 182 FLD------MKSRG---------CRPNIF-TYTSMIDGLGKS-GHVDKAFFLFEEMTSEG 224

Query: 588 EVEMAIEHIKWIQESSPTMLQEISAELFAS-LSSSSYPEPI 627
            V   + +   I     +   + +A+LF   LS    P+ +
Sbjct: 225 LVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 214/483 (44%), Gaps = 49/483 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L   G + +AL + D+M  R  + S + + V +   C+++  GQ + +LDE+R + 
Sbjct: 143 LIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAK- 201

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                  V   +II+G C+  RV++A ++L+ L     +PD ++Y  V            
Sbjct: 202 -GCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVL----------- 249

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
                   + L  A R  D         VE   CE  E     V  + T D  V     G
Sbjct: 250 --------KGLCAAKRWED---------VEVLFCEMVE--NNCVPNEVTFDMLVRFFCRG 290

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVYKVLSANDYFT 398
            +       AI   + M E G     +TL N+  N +CK+ + D+  E    + +     
Sbjct: 291 GMVE----RAIEVLDRMSEHGCTAN-TTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSP 345

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SY  ++  LC +GR  +A  ++ EM RK   P+   +N+ +   C++ L+  A  L 
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLI 405

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           +QM   GCS  + TYN L++ F   G ++ AL LF+++      P+  TYT+LL GLC  
Sbjct: 406 EQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHA 462

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHS 573
             L AA E+  + + +D  L     +  +   C++G    A +L++     G + +L   
Sbjct: 463 ERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITF 522

Query: 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633
           ++   LL  + +    E A+E +  +     ++     + +   LS     E  + + HA
Sbjct: 523 NT---LLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHA 579

Query: 634 LQE 636
           +Q+
Sbjct: 580 VQD 582



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 212/491 (43%), Gaps = 14/491 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  +L+++  S        VL +++    T +   Y  II  + +      A  + 
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           N  + +     P+  +  ++L  L +    ++   +F EM       + + F + +  FC
Sbjct: 231 N--RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFC 288

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
               + + + +LD  R  E+     + +  ++I+  CK  RV++AF+ L+ +    C PD
Sbjct: 289 RGGMVERAIEVLD--RMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPD 346

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  V +     G   + + +L +  +    P    +  FI  L  +  I +A  L E
Sbjct: 347 TISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIE 406

Query: 321 VIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            +     ++     NAL+        +D  SA+  FN +  +   P   T + L   LC 
Sbjct: 407 QMPEYGCSVGIVTYNALVNGFCVQGRVD--SALELFNSLPCE---PNTITYTTLLTGLCH 461

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + D   E+   +  ND   ++ ++NV+VSF C  G + EA  ++Q+M   G  P++  
Sbjct: 462 AERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLIT 521

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N+L++    +     A +L   + + G S +  TY+ ++   S    IE A+++FH + 
Sbjct: 522 FNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQ 581

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           + G+ P A  Y  +L  LC+      A + F   V++  M   S     +  L R G   
Sbjct: 582 DMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLK 641

Query: 558 VATKLLRGLSS 568
            A  +L  L S
Sbjct: 642 EARYVLSELCS 652



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 4/324 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I   C+  R  +A +VL          D  AY  +   +   G +   +   +    + 
Sbjct: 76  LIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRL---DAARRLIASMP 132

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAI 350
           V P    Y   I GL    R+ +A  L + ++  +          L+ +V  S     A+
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAM 192

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + M  KG  P + T + +   +C+ ++ D+  ++   LS+  +  D  SY  ++  L
Sbjct: 193 KVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGL 252

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + R  +   +  EM      P+   ++ L+   CR  ++  A ++ D+M   GC+ N 
Sbjct: 253 CAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANT 312

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              NI+I+   + G ++ A    +NM   G +PD  +YT++L+GLC+    + A E+ N+
Sbjct: 313 TLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNE 372

Query: 531 SVNHDVMLARSILSTFMISLCRRG 554
            V  +        +TF+  LC++G
Sbjct: 373 MVRKNCPPNEVTFNTFICILCQKG 396



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 173/426 (40%), Gaps = 12/426 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    +SY ++LK L  +++   ++ +  ++  N    +   +  ++    +G   ++A 
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAI 297

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            V + +  +       +CN ++  +   G +D+A +  + M   G    TI +   +   
Sbjct: 298 EVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGL 357

Query: 200 CENAKLGQVLSMLDE-VRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           C   +      +L+E VRK    N +   + I +L     C+   +++A  +++++    
Sbjct: 358 CRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICIL-----CQKGLIDQAILLIEQMPEYG 412

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C    + Y  +   F + G V   +  L+    L   P T  Y   + GL    R+  A 
Sbjct: 413 CSVGIVTYNALVNGFCVQGRV---DSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAA 469

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL   ++     ++    N L+           AI     M+E G  P L T + L   +
Sbjct: 470 ELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGI 529

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            +   S+E +E+   L +     D  +Y+ +V  L    R+ EA  +   ++  G+ P  
Sbjct: 530 TEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKA 589

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN ++ A C+      A   +  M ++ C  N  TY ILI   +  G ++ A  +   
Sbjct: 590 VMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSE 649

Query: 496 MLEKGV 501
           +  +GV
Sbjct: 650 LCSRGV 655



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 119/273 (43%), Gaps = 34/273 (12%)

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF--------- 409
           +G  P +   + L +NLC+R ++ +   V +    +    D+ +YN +V+          
Sbjct: 64  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDA 123

Query: 410 -----------------------LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                  LC  GR+ +A  ++ +M R+   P V  Y  L+EA C
Sbjct: 124 ARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVC 183

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +      A K+ D+M A GC+ N+ TYN++I+       ++ A ++ + +   G  PD  
Sbjct: 184 KSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTV 243

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +YT++L+GLC     +    +F + V ++ +         +   CR G    A ++L  +
Sbjct: 244 SYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRM 303

Query: 567 SSDLGHSDSHV--ILLKSLADAREVEMAIEHIK 597
           S     +++ +  I++ S+     V+ A E + 
Sbjct: 304 SEHGCTANTTLCNIVINSICKQGRVDDAFEFLN 336



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + L + LC R +  + + +   +   +    + +Y V++  +C S    +A  V
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG  P++  YN ++   CRED +  A+++ +++ + G   +  +Y  ++     
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCA 254

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
               E    LF  M+E    P+  T+  L+   C+   ++ A EV ++   H      ++
Sbjct: 255 AKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHI-KWI 599
            +  + S+C++G    A + L  + S     D  S+  +LK L  A   E A E + + +
Sbjct: 315 CNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374

Query: 600 QESSP 604
           +++ P
Sbjct: 375 RKNCP 379



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  +++    +G  PDV     L+   CR      A ++      SG   ++  YN 
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L++ +   G ++ A RL  +M    V PDA TYT L+ GLC    +  A  + +  +  +
Sbjct: 111 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
              +    +  + ++C+   F  A K+L
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVL 195


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 230/521 (44%), Gaps = 22/521 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++++L    +I    +VL  +          +Y   + +  +    + A  V  ++
Sbjct: 113 TYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDL 172

Query: 146 KF-NCE-DIGPEICNSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCEN 202
               C  D+G   CN +L  +   G +D A+++  D +   G E   + +   +   C  
Sbjct: 173 HGRGCALDVGN--CNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMA 230

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            + G V  +++E+        N    + LI H  C+    E   +V  ++    C PD  
Sbjct: 231 RRWGHVQDLMEEMVA-AGCPPNIVTFSTLIGH-LCRNGLFERVHEVHAQMAEHGCAPDVR 288

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +       +     +L +    G++P    Y   + GL    R  EA+ L   +
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEM 348

Query: 323 VSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                 +DD   N L+  +     +D    I     M+E G +P + T + +    CK  
Sbjct: 349 FDKDCPLDDVTFNILVDFLCQNGLVD--RVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE V + + ++A     +  SY +++  LC++ R  +A  ++ +M ++G  P+   +N
Sbjct: 407 LIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFN 466

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+   C++ L+  A +L  QM  +GCS +L +Y+ +I    + G  + AL L + M++K
Sbjct: 467 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKK 526

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGH 555
           G++P+   Y+S+   L  E  +    ++F    + +V  D +L  +++S    SLC+RG 
Sbjct: 527 GMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVIS----SLCKRGE 582

Query: 556 FLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
              A + L  + S   + +  ++ IL++ LA    V+ A E
Sbjct: 583 TDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 623



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/457 (19%), Positives = 195/457 (42%), Gaps = 42/457 (9%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           P+F   P  +SY+++L+ L ++R+   +  +++++       +   +  +I  L +    
Sbjct: 209 PSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLF 268

Query: 136 QKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++   V  ++  +     P++    +++  +  +  ++ A  + + M   G+  + + + 
Sbjct: 269 ERVHEVHAQMAEH--GCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYN 326

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +   C   +  +   +L E+  ++  + +  V   +++   C+   V+   +VL+++ 
Sbjct: 327 TLLKGLCSADRWEEAEGLLAEMFDKDCPLDD--VTFNILVDFLCQNGLVDRVIEVLEQML 384

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD I Y  V   F   G + E  ++L+     G  P T  Y   + GL    R  
Sbjct: 385 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWV 444

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A+EL                                   + MI++G  P   T + L  
Sbjct: 445 DAEEL----------------------------------MSQMIQQGCPPNPVTFNTLIN 470

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK+   ++ +E+ K +  N    D+ SY+ ++  L  +G   EA  ++  M +KG+ P
Sbjct: 471 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSP 530

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +   Y+S+  A   E  +    ++++ +  +    +   YN +IS   + GE + A+   
Sbjct: 531 NTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFL 590

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             M+  G  P+ +TYT L+ GL  E  ++ A E+  +
Sbjct: 591 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTE 627



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 36/237 (15%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T   L + LC R +  + + V   ++          Y+V +   C +   R A GV
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 423 IQEMKRK------------------------------------GLDPDVSFYNSLMEACC 446
           ++++  +                                    G +PDV  YN+++   C
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
                   + L ++M A+GC  N+ T++ LI      G  E    +   M E G APD  
Sbjct: 229 MARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVR 288

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            Y ++++G+C+E  L+ A  + N+  ++ +       +T +  LC    +  A  LL
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLL 345



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 33/187 (17%)

Query: 403 YNVMVS--------------------------------FLCTSGRLREAYGVIQEMKRKG 430
           YN MV+                                 LC  GR+ +A  V+ +M R+G
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRG 141

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
             P    Y+  +EA CR    R A  +   +   GC+ ++   N+++    + G ++ A+
Sbjct: 142 CAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAV 201

Query: 491 RLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           RL  ++L   G  PD  +Y ++L GLC         ++  + V           ST +  
Sbjct: 202 RLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGH 261

Query: 550 LCRRGHF 556
           LCR G F
Sbjct: 262 LCRNGLF 268


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/538 (23%), Positives = 212/538 (39%), Gaps = 58/538 (10%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFII 126
           L  F +++  P     PL  H++   L LS   + A+   L   +   +   SS +  ++
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            +         A   F+ +          + N++L  L   G I  AL +++ M   G  
Sbjct: 145 AAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCA 204

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +   + V +   C+    G  L M DE+  R   M N  +  VL+    C   +++EA 
Sbjct: 205 PNRATYNVLMDGLCKQGMAGDALKMFDEMLDR-GIMPNVKIYTVLL-SSLCNAGKIDEAV 262

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVLKKKRKLGVAPRTNDYREFI 303
           ++L  ++ + C PD + Y         +G V   F+R V+L+     G A     Y   I
Sbjct: 263 QLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG---GFALGLKGYSCLI 319

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            GL   RR  E     + ++    + D  +   +I G   +     A+ F + M +KG V
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P     + + K LC     +    +   +  N+   D  +  +M+  LC  G + EA  +
Sbjct: 380 PDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM--------------------- 461
             EM   G DP V  YN+L++   RE  L  A+ L+ +M                     
Sbjct: 440 FDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCD 499

Query: 462 ---------------------------FASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
                                        SG   ++ TYN LI+   +   ++GA+RLF 
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            +  KG++PD  TY +L++GL +      A  +F   +      + SI ++ M SLCR
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCR 617



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/505 (21%), Positives = 204/505 (40%), Gaps = 63/505 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++ L  L    ++N     L  ++     L    Y  +I  L Q +   + F  +  
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     +I P++    + +   A  G I++AL   D M  +G    T  +   +   C++
Sbjct: 338 MLE--RNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDH 395

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L +  ++  E+   +N+++  S    ++I G CK   V+EA ++ DE+    C P  +
Sbjct: 396 GDLERAHTLRSEML--QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVM 453

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F   G + E   +L  K ++G  P    +    LG     ++C+++ L +++
Sbjct: 454 TYNALIDGFYREGRL-EEARMLFHKMEMGNNPSL--FLRLTLG---ANQVCDSESLRKLV 507

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                    D+  +  G V       A      +I+ G VP + T + L   LCK    D
Sbjct: 508 --------HDMCQS--GQV-----LKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
             V ++K L       D  +Y  ++  L  + R  +A  + Q + + G  P +S YNS+M
Sbjct: 553 GAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMM 612

Query: 443 EACCREDLLRPAKKLW-------------------------DQMFASGCSGNLKT----- 472
            + CR   L  A  LW                         D     G    +K      
Sbjct: 613 RSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYG 672

Query: 473 ------YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
                 Y I +    +V   + ALR+FH + E G+         L+  LC + NL AA +
Sbjct: 673 YISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVD 732

Query: 527 VFNKSVNHDVMLARSILSTFMISLC 551
           +   +++  ++L++ + +  +  LC
Sbjct: 733 IMLYALSKSIILSQPVGNRLLRWLC 757



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 193/473 (40%), Gaps = 24/473 (5%)

Query: 75  SQQPNFTHSPLS--YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           S+   F   P +  Y++ILK+L  S  I    ++  ++       + + Y  ++  L + 
Sbjct: 161 SRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQ 220

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                A  +F+E+         +I   LL+ L + G ID A+++   M  +G     + +
Sbjct: 221 GMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTY 280

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
             F+   C+  ++ +    L  V  ++     G      +I G  + +R +E F     +
Sbjct: 281 NAFLSGLCKVGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R   PD + Y I+       G + +    L   +K G  P T  Y   +  L     +
Sbjct: 339 LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDL 398

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLS 369
             A  L   ++     +D      +I  +     +D   A+  F+ M E G  PT+ T +
Sbjct: 399 ERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD--EAMQIFDEMGEHGCDPTVMTYN 456

Query: 370 NLSKNLCKRNKSDELVEVYK--------------VLSANDYFTDMESYNVMVSFLCTSGR 415
            L     +  + +E   ++                L AN    D ES   +V  +C SG+
Sbjct: 457 ALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQ-VCDSESLRKLVHDMCQSGQ 515

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +AY +++ +   G+ PDV  YN+L+   C+   L  A +L+ ++   G S +  TY  
Sbjct: 516 VLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LI           A+ LF N+L+ G +P  + Y S++  LC+   L  A  ++
Sbjct: 576 LIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/419 (18%), Positives = 159/419 (37%), Gaps = 53/419 (12%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL F +   ++  F      Y+++LK L     +    ++  ++  N + LDS+    +I
Sbjct: 366 ALSFLD-VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD--EMSHRG 184
             L +     +A  +F+E+  +  D      N+L+     +G ++ A  +F   EM +  
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484

Query: 185 VEFSTIGFGVFIWKFCENAKL----------GQVLSMLDEVRKRENSMINGSVIAV-LII 233
             F  +  G    + C++  L          GQVL     +R   +S +   V+    +I
Sbjct: 485 SLFLRLTLGAN--QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLI 542

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +G CK + ++ A ++  EL+++   PD I Y  + +         +  ++ +   + G +
Sbjct: 543 NGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSS 602

Query: 294 PRTNDYREFILGLIVERRICEAKEL--------------GEVIVSGKFTIDDDVLNALIG 339
           P  + Y   +  L   +++ +A  L               EV+ +    I+D  L+  + 
Sbjct: 603 PSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVR 662

Query: 340 SVSSIDPR-----------------------SAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            +  ID                          A+  F+ + E G   T +  + L   LC
Sbjct: 663 ELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLC 722

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
                +  V++     +          N ++ +LC   R ++A  +   M   G D DV
Sbjct: 723 WDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRMHLVGYDMDV 781


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/540 (22%), Positives = 232/540 (42%), Gaps = 35/540 (6%)

Query: 17  IISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ 76
           I+ +S+R   + KW   L Q L  + L               +++ +   A+ FF WA  
Sbjct: 38  IVESSSRLGFSMKWNGQLSQRLVGVIL---------------HMVKNGESAMVFFGWAGT 82

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           + +F H+  +Y+   ++L  + Q      + K+    ++  DS  Y  +I  L      +
Sbjct: 83  RQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLK 142

Query: 137 KAFSVFNEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            A S++ E+     D G  P +  C  LL  L   G ++ AL+ F++MS      +   +
Sbjct: 143 LACSLYEEMV----DRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAAT---W 195

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            + I       ++ +     +E++   ++ I  +    ++I+G  K  +V EA +VL E+
Sbjct: 196 TILIDGLFRAIRVDEACYYFEEMK---HTAIPNNWTYTVVINGLVKAGKVAEAERVLQEM 252

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            +    P    Y  V       G + +   +L+  ++ G       Y   I G    + I
Sbjct: 253 PV----PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEI 308

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRVPTLSTLSN 370
             A EL E + S  F  D    + LI  +      S    +      E    P + + + 
Sbjct: 309 DRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNT 368

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L     K  + ++  +++  +       D+ +Y+ ++  LC +GR  EA+  ++EM  K 
Sbjct: 369 LIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKK 428

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + P V  Y+S++   CR   L  A  ++D M A+GC  NL  YN LI    + G +  A 
Sbjct: 429 ILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAK 488

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
                M E+G +PD  TY +L+ GLC+ +    A +++ +S+   + ++ +  +  + SL
Sbjct: 489 LRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASL 548



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/520 (20%), Positives = 225/520 (43%), Gaps = 10/520 (1%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  +    L+Y++++      ++I+    +L+++K N    D   Y  +I  L + K  
Sbjct: 284 KRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRL 343

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            +A  +   ++ N +D  P +   N+L+   +    +++A ++F EM   G     + + 
Sbjct: 344 SEARDLLGTLR-NEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYS 402

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I   C   +  +  S L+E+  ++  ++    +   +I G C+   ++ A  V D + 
Sbjct: 403 TLIRGLCNAGRASEAHSYLEEMVGKK--ILPKVPVYSSVISGLCRAGELDAASTVFDSMV 460

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C+P+   Y  +       G + + ++ +K+  + G +P    Y   I+GL    R  
Sbjct: 461 ANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTD 520

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           EA +L    +     I +   N +I S+  ++    ++    ++  G  PT    + + +
Sbjct: 521 EACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVL--RVVLATGNSPTAFFYATVIE 578

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           +LCK N   E  ++ + +       D  + + +V  +C   +   A   ++EM R G  P
Sbjct: 579 SLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKP 638

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRL 492
            V  Y++L+ A  +      A  +  ++ + + C  +   Y  LI+ +S   ++E A  +
Sbjct: 639 SVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNV 698

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +  K        Y +LL+GL +  NLQ  +E+  +   ++ ++  +  +  +   CR
Sbjct: 699 LQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCR 758

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV-ILLKSLADA-REVE 590
            G    A ++L  +   L  S + +  L+  LA A RE E
Sbjct: 759 LGQTDRAVRVLSEMKKVLTPSAAIIKFLVDELARAEREQE 798



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 156/360 (43%), Gaps = 20/360 (5%)

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K    +I  S+   ++I G C   +++ A  + +E+  R  +P  +  + +       G+
Sbjct: 116 KWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGN 175

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDD 332
           +   E+ L+   K+   P    +   I GL    R+ EA    +E+    +   +T    
Sbjct: 176 L---ELALRYFEKMSSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTYTV- 231

Query: 333 VLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           V+N L+  G V+  +          ++++  VPTL+  +++    CK     +   + + 
Sbjct: 232 VINGLVKAGKVAEAER---------VLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLED 282

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    Y  D  +YN ++   C    +  AY +++EMK     PD+  Y+ L+   CR   
Sbjct: 283 MKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKR 342

Query: 451 LRPAKKLWDQMF-ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
           L  A+ L   +     C+ N+ +YN LI  FS+   +  A +LF  M+  G  PD  TY+
Sbjct: 343 LSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYS 402

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L+ GLC       A     + V   ++    + S+ +  LCR G    A+ +   + ++
Sbjct: 403 TLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVAN 462



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 124/609 (20%), Positives = 238/609 (39%), Gaps = 64/609 (10%)

Query: 40  QLGLRDSLSPSLVARVINPYLLT------------HHSLALGFFNWASQQPNFTHSPLSY 87
           +L L  SL   +V R + P +LT            +  LAL +F   S  P       ++
Sbjct: 140 KLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIP----CAATW 195

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
             ++  L  + +++      +++K   I  ++  Y  +I  L++     +A  V  E+  
Sbjct: 196 TILIDGLFRAIRVDEACYYFEEMKHTAIP-NNWTYTVVINGLVKAGKVAEAERVLQEMPV 254

Query: 148 NCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                 P + N  S++      G +  A  + ++M  +G +   + +   I   C   ++
Sbjct: 255 ------PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEI 308

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDFIAY 264
            +   +L+E++   N  +       ++I G C+ KR+ EA  +L  LR  + C P+ ++Y
Sbjct: 309 DRAYELLEEMKS--NDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSY 366

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + F     V +   +  +    G  P    Y   I GL    R  EA    E +V 
Sbjct: 367 NTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVG 426

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
            K      V +++I G   + +  +A   F+ M+  G  P L+  ++L   LCK  +  +
Sbjct: 427 KKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCD 486

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGR---------------------------- 415
                K ++      D  +Y  ++  LC   R                            
Sbjct: 487 AKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIA 546

Query: 416 ----LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
               L +A  V++ +   G  P   FY +++E+ C+E+ L  A++L + M  +G   +  
Sbjct: 547 SLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGS 606

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T + L+       +   A+     M+  G  P   TY++LL  L +      A  V  + 
Sbjct: 607 TVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRL 666

Query: 532 VNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
           ++H       +    +I +   +     A  +L+ L S  G     ++  LLK L   R 
Sbjct: 667 ISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRN 726

Query: 589 VEMAIEHIK 597
           ++M  E ++
Sbjct: 727 LQMVYELLR 735



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TYN         G+ E A RLF     + + PD+ TY  L+ GLC    L+ A  ++
Sbjct: 89  TVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLY 148

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADARE 588
            + V+  +          + +LC+ G+  +A +    +SS +  + +  IL+  L  A  
Sbjct: 149 EEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSS-IPCAATWTILIDGLFRAIR 207

Query: 589 VEMAIEHIKWIQESS 603
           V+ A  + + ++ ++
Sbjct: 208 VDEACYYFEEMKHTA 222


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 230/549 (41%), Gaps = 55/549 (10%)

Query: 60  LLTHHSLALGFFNWAS----QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           L++   L LGF  + +    +   F    + Y +I+ +L  +    A +  + ++     
Sbjct: 167 LMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGF 226

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVF-----------NEVKFN------CE-------- 150
            LDS +   ++    +G N + A  VF           N V ++      CE        
Sbjct: 227 LLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAF 286

Query: 151 ----DIGPEICNS-------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
                +G + C         L+  L   G ID A  +FDEM  RG + +   + V I   
Sbjct: 287 GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C + K+ +   +    RK     I  SVI    +I+G+CK  RV  AF++L  +  R CK
Sbjct: 347 CRDGKIEEANGV---CRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACK 403

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+   +  + E    +G  ++   +LK+    G++P    Y   I GL  E  +  A +L
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKL 463

Query: 319 GEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              + S     D     A+I +       D  SA  F   M+ KG      T + L   +
Sbjct: 464 LTSMNSFDLEPDCLTFTAIINAFCKQGKADVASA--FLGLMLRKGISLDEVTGTTLIDGV 521

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K+ + + + + L      T   S NV++  L    +L+E   ++ ++ + GL P V
Sbjct: 522 CNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSV 581

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y +L++   R   +  + ++ + M  SGC  N+  Y I+I+   + G +E A +L   
Sbjct: 582 VTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSA 641

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M + GV+P+  TYT +++G      L  A E     V     L   I S+ +     RG 
Sbjct: 642 MQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLL-----RG- 695

Query: 556 FLVATKLLR 564
           F+++ K +R
Sbjct: 696 FVLSQKGIR 704



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 118/537 (21%), Positives = 218/537 (40%), Gaps = 107/537 (19%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           +SP++ ++VI+    + + + + FF W  +  ++   P   + +LK              
Sbjct: 67  MSPNVASQVIS-LQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLK-------------- 111

Query: 107 LKQVKVNKITLDSSVYRF---IIPSLIQG-----KNTQKAFSVFNEVK-FNCEDIGPEIC 157
                   + + S ++R    +I +LI+      K   K  S F+E++  +   +     
Sbjct: 112 --------LIVSSGLFRVAHDVIVALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCY 163

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           +SLL  LA       A   +  M   G     I +   +   C+N         + ++ K
Sbjct: 164 SSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILK 223

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +++  ++  L++ GFC+G  + +A KV D +                         
Sbjct: 224 -VGFLLDSHIVTSLLL-GFCRGLNLRDALKVFDLM------------------------- 256

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                     R+   AP +  Y   I GL      CE   L E      F + D      
Sbjct: 257 ---------SREGTCAPNSVSYSILIHGL------CEVGRLEEA-----FGLKDQ----- 291

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M EKG  P+  T + L K LC R   D+   ++  + A    
Sbjct: 292 ------------------MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCK 333

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y V++  LC  G++ EA GV ++M + G+ P V  YN+L+   C++  + PA +L
Sbjct: 334 PNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFEL 393

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              M    C  N++T+N L+     VG+   A+ L   ML+ G++PD  +Y  L++GLC+
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           E ++  A+++     + D+       +  + + C++G   VA+  L     +G+S D
Sbjct: 454 EGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLD 510



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 10/199 (5%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SY++++  LC  GRL EA+G+  +M  KG  P    Y  L++A C   L+  A  L+D+M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A GC  N+ TY +LI      G+IE A  +   M++ G+ P   TY +L+ G C++  +
Sbjct: 328 IARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRV 387

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSH 576
             AFE+                +  M  LCR G    A  LL+     GLS D+    S+
Sbjct: 388 VPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI---VSY 444

Query: 577 VILLKSLADAREVEMAIEH 595
            +L+  L   RE  M + +
Sbjct: 445 NVLIDGL--CREGHMNVAY 461



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/304 (18%), Positives = 120/304 (39%), Gaps = 46/304 (15%)

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +  KL + L+ML ++ K    ++   V    ++ G  +   +  +F++L+ +++  C P+
Sbjct: 558 KGCKLKEELAMLGKINKL--GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPN 615

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              Y I+       G V E E +L   +  GV+P    Y   + G +   ++  A E   
Sbjct: 616 VYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVR 675

Query: 321 VIVSGKFTIDDDVLNALI-------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            +V   + ++D + ++L+         +   DP            K  +  +  L   + 
Sbjct: 676 AMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECI---------KELISVVEQLGGSTS 726

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC                             +V+ LC  GR  E+ G++Q + + G+  
Sbjct: 727 GLCI---------------------------FLVTRLCKEGRTDESNGLVQTILKSGVFL 759

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           + +  + +ME+ C +       +L   +  SG   + K++ ++I    + G+ E A  L 
Sbjct: 760 EKAI-DIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELV 818

Query: 494 HNML 497
             +L
Sbjct: 819 MELL 822



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 366 STLSNLSKNLC------KRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           S +S++S N+       +R+ +D  V  +  V   + Y  D    N ++  + +SG  R 
Sbjct: 62  SLVSHMSPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLFRV 121

Query: 419 AYGVIQEMKRK----------------------GLDPDVSFYNSLMEACCREDLLRPAKK 456
           A+ VI  + R+                      G   +   Y+SL+ +  + DL   A  
Sbjct: 122 AHDVIVALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYV 181

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            + +M A G    +  Y  +++   + G  E A      +L+ G   D+   TSLL G C
Sbjct: 182 TYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFC 241

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGH--- 572
           +  NL+ A +VF+           S+  + +I  LC  G    A     GL   +G    
Sbjct: 242 RGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAF----GLKDQMGEKGC 297

Query: 573 ---SDSHVILLKSLADAREVEMA 592
              + ++ +L+K+L D   ++ A
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKA 320


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 192/417 (46%), Gaps = 13/417 (3%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLA 165
           KV K+ L  ++  F  +I  L +     +A  +F++ V   C+   P++   N+++  L 
Sbjct: 153 KVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ---PDVYTYNTIINGLC 209

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
             G    A  +  +M   G + + + +   I   C +  + + L +   ++ +    I+ 
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKG---ISP 266

Query: 226 SVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            +     +I G CK  R +EA  +L+E+      PD + + ++ + F   G V E   VL
Sbjct: 267 DIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVL 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
           K   ++GV P    Y   + G  +   + EA++L  V+++     +    N LI G   +
Sbjct: 327 KTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKA 386

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+  FN MI +G  P   + + L    C+  K  E  ++++ +  N    D+ +Y
Sbjct: 387 KRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTY 446

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           ++++   C  G L +A+ + + M+   L P++  Y  L+ A C+    + A+KL+ ++F 
Sbjct: 447 SILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFV 506

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            G   +++ Y  +I+   + G ++ AL  F NM   G  PD  +Y  ++ GL Q  +
Sbjct: 507 QGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKD 563



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 198/472 (41%), Gaps = 40/472 (8%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L A++    Y D  + +  +M   G+  +     +F+  FC+  ++    S+L +V K  
Sbjct: 99  LSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKL- 157

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    V    +I+G CK     +A ++ D++  + C+PD   Y  +      +G    
Sbjct: 158 -GLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAA 216

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +LKK  + G  P    Y   I  L  +R + EA ++   + +   + D     +LI 
Sbjct: 217 AAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS------ 392
            +      + A    N M     +P + T + L    CK  K  E + V K ++      
Sbjct: 277 GLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEP 336

Query: 393 ----------ANDYFTDME-------------------SYNVMVSFLCTSGRLREAYGVI 423
                         +TD+                    SYN++++  C + R+ EA  + 
Sbjct: 337 NVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLF 396

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EM  +GL P+   YN+L+   C+   LR A+ L+  M  +G   +L TY+IL+  F + 
Sbjct: 397 NEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ 456

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G +  A RLF  M    + P+   YT L+  +C+  N + A ++F++     +     + 
Sbjct: 457 GYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLY 516

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
           +T +  LC+ G    A +  R + +D    D  S+ ++++ L   ++   A+
Sbjct: 517 TTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRAL 568



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 3/348 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+  L  D  ++ AL +F  M  +G+      +   I   C+ ++  +  ++L+E+  
Sbjct: 237 STLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS 296

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             N M +     VL+   FCK  +V EA  VL  +     +P+ + Y  +   + L   V
Sbjct: 297 L-NIMPDIVTFNVLV-DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +       G  P    Y   I G    +RI EA +L   ++    T ++   N L
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I     +   R A   F  M   G +P L T S L    CK+    +   +++ + +   
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++  Y ++V  +C SG  ++A  +  E+  +GL P V  Y +++   C+E LL  A +
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            +  M A GC  +  +YN++I    +  +   AL L   M ++G   D
Sbjct: 535 AFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIAD 582



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 165/371 (44%), Gaps = 23/371 (6%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  QPN     ++Y +++ SL   R +N    +   +K   I+ D   Y  +I  L +  
Sbjct: 227 AGCQPNM----VTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFS 282

Query: 134 NTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVE----- 186
             ++A ++ NE+     +I P+I   N L+     +G +  AL +   M+  GVE     
Sbjct: 283 RWKEASALLNEM--TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVT 340

Query: 187 FSTIGFGVFIWK-FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           +S++ +G  +W    E  KL  V  M+ +  K      N      ++I+G+CK KR++EA
Sbjct: 341 YSSLMYGYSLWTDVVEARKLFHV--MITKGCKPNIFSYN------ILINGYCKAKRIDEA 392

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            ++ +E+  +   P+ ++Y  +   F  +G + E + + +     G  P    Y   + G
Sbjct: 393 MQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDG 452

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPT 364
              +  + +A  L   + S     +  +   L+ ++  S + + A   F+ +  +G  P 
Sbjct: 453 FCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPH 512

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           +   + +   LCK    DE +E ++ + A+    D  SYNV++  L        A  ++ 
Sbjct: 513 VQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVG 572

Query: 425 EMKRKGLDPDV 435
           EM+ +G   DV
Sbjct: 573 EMRDRGFIADV 583


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 232/539 (43%), Gaps = 52/539 (9%)

Query: 66  LALGFFNWASQQPNFTHSPLSY----HSILKS--------------LSLSRQINAIDSVL 107
           LAL FFN+     NF HS  S+    HS+L++              L         ++  
Sbjct: 85  LALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFWPASSLLQTLLLRGLNPHQIFENFF 144

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--CNSLLAV 163
           +  K  K +  SS +  +I   +Q K       V N ++    D G  PE+   ++LL  
Sbjct: 145 ESYKKYKFS-SSSGFDMLIQHYVQNKRVMDGVLVVNLMR----DYGLLPEVRTLSALLNA 199

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           LA        L++FD + + GV+     + V +   CE     +   ++++      S+ 
Sbjct: 200 LARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSL- 258

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA------EEFKLMGS 276
             S++   + I+G CK KRV EA +V   L  +  K D + Y  +       +EF++   
Sbjct: 259 --SIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGME 316

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD--VL 334
           + +  +      +LG  P        I GLI    I  A EL   +  GK  +  +  V 
Sbjct: 317 MMDEMI------ELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKV--GKLGVVPNLFVY 368

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N++I S+        A + F+ M E+G  P   T + L     +R K D     +  +  
Sbjct: 369 NSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIE 428

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                 + SYN M++  C  G+++ A  + +EM  KGL P V+ Y SL+   C++ L+  
Sbjct: 429 CGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPK 488

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A KL+ +M   G + N  T+  LI    ++ ++  A +LF  M+E  + P+  TY  L+E
Sbjct: 489 AFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIE 548

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
           G C+E N   AFE+ ++ +   +          +  LC  G    A + +    +DL H
Sbjct: 549 GHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFI----NDLHH 603



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 185/437 (42%), Gaps = 16/437 (3%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL++    DG +  A K++ EM+ +G+  +T+ F   I   C+  K+ +   + DE+   
Sbjct: 475 SLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMV-- 532

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E  ++   V   ++I G C+      AF++LDE+  +   PD   YR +       G V 
Sbjct: 533 ELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVS 592

Query: 279 E-REVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           E +E +     K     R ++  Y   + G   E RI EA    + +V     +D     
Sbjct: 593 EAKEFINDLHHK---HQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYA 649

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            LI    + + R        M  KG  P     + L     K     +  E + ++    
Sbjct: 650 VLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEG 709

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y  +  +Y  +V+ L  +G + EA  + + M      P+   Y   ++   +E  +  A 
Sbjct: 710 YVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENAL 769

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L + M   G   N  TYNILI  + ++G+ + A +L   M+  G+ PD  TY++ +   
Sbjct: 770 QLHNAML-QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEY 828

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           C+  N+ AA +++   +   +   R + +  + + C  G    A +L     LRGL    
Sbjct: 829 CKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPT- 887

Query: 571 GHSDSHVILLKSLADAR 587
             S  H ++++    AR
Sbjct: 888 -QSTYHSLMVQLAQRAR 903



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 193/486 (39%), Gaps = 62/486 (12%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           +I  LI+  + + AF + N+V      + P   + NS++  L   G ++ A  +F  M+ 
Sbjct: 336 LIEGLIKMGSIEGAFELLNKV--GKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAE 393

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFC 237
           RG+  + + + + I  F   AKL       D      N MI   + A +     +I+  C
Sbjct: 394 RGLNPNDVTYTILIDGFGRRAKL-------DVAFYYFNKMIECGISATVYSYNSMINCQC 446

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K  +++ A  +  E+  +  KP    Y  +   +   G V +   +  +    G+AP T 
Sbjct: 447 KFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTV 506

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
            +   I GL    ++ EA +L + +V  K   ++   N LI G     +   A    + M
Sbjct: 507 TFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEM 566

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           I+KG  P   T   L   LC   +  E  E    L       D   Y  ++   C  GR+
Sbjct: 567 IKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRI 626

Query: 417 REA----------------------------------YGVIQEMKRKGLDPDVSFYNSLM 442
           +EA                                  + +++EM  KG+ PD   Y  L+
Sbjct: 627 KEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILI 686

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +   +   L+ A + W  M   G   N  TY  L++   + G +  A  LF  ML     
Sbjct: 687 DGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAI 746

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL-----CRRGHFL 557
           P+  TY   L+ L +E N++ A ++      H+ ML  S  +T   ++     C+ G F 
Sbjct: 747 PNHITYGCFLDHLTKEGNMENALQL------HNAMLQGSFANTVTYNILIRGYCQIGKFQ 800

Query: 558 VATKLL 563
            A KLL
Sbjct: 801 EAAKLL 806


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/598 (22%), Positives = 259/598 (43%), Gaps = 55/598 (9%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W   +E  L +L L  +  P LV  V+    L   + A+ +F WA +  +  H   +Y+S
Sbjct: 80  WGSSVENRLAELDLNPN--PELVIGVLRR--LKDVNNAVNYFRWAERLTDRAHCREAYNS 135

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS---VFNEVK 146
           +L  ++ +R+ N ++ +L+++ +      ++    I+ S I+ +  ++AF+      ++K
Sbjct: 136 LLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLK 195

Query: 147 F--------------------NC--------EDIGPEI----CNSLLAVLASDGYIDNAL 174
           F                    +C        +++G  +      +L+ V A +G +D AL
Sbjct: 196 FRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAAL 255

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            + DEM    +E   + + V I  F +  K+        E++   N ++   V    +I 
Sbjct: 256 SLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKA--NGLVLDDVTYTSMIG 313

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             CK  R+ EA ++ + +   +  P   AY  +   + + G   +   +L+++R+ G  P
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 295 RTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDD-DVLNALIGSVSSIDP-RSAIV 351
               Y   +  L  + ++ EA K+  E+    K  I +    N +I  +       +A+V
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEM---KKDAIPNLSTYNIMIDMLCKAGKLETALV 430

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
             + M + G  P + T++ +   LCK  + D+   +++ L       D  +Y  ++  L 
Sbjct: 431 VRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG 490

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLME---ACCREDLLRPAKKLWDQMFASGCSG 468
             GR+ EAY + ++M      P+   Y SL+     C R++      K++++M   GCS 
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE---DGHKIYNEMLRLGCSP 547

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +L   N  +    + GEIE    LF  +   G  PDA +YT L+ GL +      A+E+F
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
                   +L     +T +   C+ G    A +LL  + +  GH  + V+   S+ D 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GHEPT-VVTYGSVIDG 663



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/520 (22%), Positives = 226/520 (43%), Gaps = 20/520 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +SY+ IL  L    Q++      +++K + I  + S Y  +I  L +    + A  V 
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVR 432

Query: 143 NEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           + +K    D G  P +   N ++  L     +D+A  +F+ + H+      + +   I  
Sbjct: 433 DAMK----DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
              + ++ +   + +++   + + I  +V+   +I  F K  R E+  K+ +E+    C 
Sbjct: 489 LGRHGRVDEAYKLYEQML--DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCS 546

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD +      +     G + +   + ++ + LG  P    Y   I GL+      EA EL
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              +      +D    N +I G   S     A      M  KG  PT+ T  ++   L K
Sbjct: 607 FYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++E+ +KGL P+V  
Sbjct: 667 IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT 726

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N L++A  + + +  A   +  M    C+ N  TY+ILI    ++ +   A   +  M 
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           ++G  P+  TYT+++ GL +  N+  A  +F K      +   +I +  +  L       
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846

Query: 558 VATKL-----LRGLSSDLGHSDSHVILLKSLADAREVEMA 592
            A +L     L+G S    ++ + V+LL SL  A  +E A
Sbjct: 847 DAYRLFEEARLKGCSI---YTKTCVVLLDSLHKAECIEQA 883



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 201/453 (44%), Gaps = 20/453 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + ++N    + + +  NK    +  Y  +I         + A+S+   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCE 201
            +   +   P +   N +L+ L   G +D ALK F+EM    +   ST  + + I   C+
Sbjct: 366 QRR--KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLST--YNIMIDMLCK 421

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             KL   L + D ++   ++ +  +VI V +++   CK +R+++A  + + L  + C+PD
Sbjct: 422 AGKLETALVVRDAMK---DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPD 478

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  + E     G V E   + ++       P    Y   I         C  KE G 
Sbjct: 479 AVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK----CGRKEDGH 534

Query: 321 VIVSGKFTI----DDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            I +    +    D  +LN  +  V  + +       F  +   G +P   + + L   L
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K   + E  E++  +       D  +YN ++   C SG++ +AY +++EMK KG +P V
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y S+++   + D L  A  L+++  + G   N+  Y+ LI  F +VG I+ A  +   
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEE 714

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +++KG+ P+  T+  LL+ L +   +  A   F
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 1/282 (0%)

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C  + L E+ ++G    ++  +  ++  + S   R A  F   M +    P  S  +NL 
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLI 207

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L     SD ++ +++ +    Y  ++  +  ++      GR+  A  ++ EMK   L+
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PDV  YN  ++   +   +  A K + +M A+G   +  TY  +I    +   +  A+ L
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F +M +    P A  Y +++ G       + A+ +  +      + +    +  +  L R
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387

Query: 553 RGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAI 593
           +G    A K    +  D + +  ++ I++  L  A ++E A+
Sbjct: 388 KGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETAL 429


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 157/327 (48%), Gaps = 2/327 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++   C   R+EEA  V+ ++R   C P+ + Y  +   F   G +   E V+   R+ 
Sbjct: 157 ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 291 GVA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RS 348
           G A P    +   + GL    R+  A+++ + +V      D    N L+     +     
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           ++  F+ M ++G VP + T ++L    CK    ++ V +   +       +  ++  ++ 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G L +A   ++EM++ G+ P V  YN+L+   C+   +  A++L  +M A     
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY+ +IS + +VG ++ A +L   ML+KGV PDA TY+SL+ GLC+E  L  A E+F
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGH 555
              +   V       +T +   C+ G+
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGN 483



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 181/410 (44%), Gaps = 3/410 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L + G ++ A+ +  +M   G   + + +   +  FC   +L     ++  +R+
Sbjct: 156 NILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             N+  N  V    +++G CK  R+E A KV DE+      PD ++Y  +   +  +G +
Sbjct: 216 EGNAKPN-LVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   V  +  + G+ P    +   I        + +A  L   +      +++    AL
Sbjct: 275 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 334

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A++    M + G  P++   + L    CK  + D   E+ + + A   
Sbjct: 335 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 394

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y+ ++S  C  G L  A+ + Q+M +KG+ PD   Y+SL+   C E  L  A +
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L++ M   G   +  TY  LI    + G +E AL L   M+ KGV PD  TY+ L+ GL 
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +    + A  +  K + H+  +  +I    ++  C +  F     LL+G 
Sbjct: 515 KSARTKEAHRLLFK-LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 563



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 212/478 (44%), Gaps = 42/478 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NS++  L   G ++ A K+FDEM   G+    + +   +  +C+   L + L++  E+ +
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 286

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   ++   V    +IH  CK   +E+A  ++ ++R R  + + + +  + + F   G +
Sbjct: 287 R--GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +  + +++ RK G+ P    Y   I G     R+  A+EL   + + +   D    + +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 338 IGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I     V ++D  SA      M++KG +P   T S+L + LC+  + ++  E+++ +   
Sbjct: 405 ISGYCKVGNLD--SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  +Y  ++   C  G + +A  +  EM RKG+ PDV  Y+ L+    +    + A
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 455 KKL---------------WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +L               +D +         K+   L+  F   G ++ A +++ +ML++
Sbjct: 523 HRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 582

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCR----R 553
               D + Y+ L+ G C+  N++ A         H  ML    S  ST  ISL R     
Sbjct: 583 NWKLDGSVYSILIHGHCRGGNVRKALSF------HKQMLRSGFSPNSTSTISLVRGLFEE 636

Query: 554 GHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK-----WIQESSPTM 606
           G  + A   ++ L +    +D+     K+L D    E  +++ +     W  ESSP++
Sbjct: 637 GMVVEADNAIQDLLTCCPLADAEAS--KALIDLNRKE-GMDYFQAQGEIWYSESSPSV 691



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           NA++ ++S     SA  F + M+  G  P + T + L + LC R + +E V V   +   
Sbjct: 122 NAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGA 181

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRP 453
               +  +YN +V+  C +G L  A  V+  M+ +G   P++  +NS++   C+   +  
Sbjct: 182 GCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEG 241

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+K++D+M   G + ++ +YN L+S + +VG +  +L +F  M ++G+ PD  T+TSL+ 
Sbjct: 242 ARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIH 301

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             C+  NL+ A  +  +     + +     +  +   C++G
Sbjct: 302 ATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 196/459 (42%), Gaps = 28/459 (6%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
            + +PN     ++++S++  L  + ++     V  ++    +  D   Y  ++    +  
Sbjct: 217 GNAKPNL----VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 272

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
              ++ +VF+E+      + P++    SL+      G ++ A+ +  +M  RG+  + + 
Sbjct: 273 CLHESLAVFSEMTQ--RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLD 250
           F   I  FC+   L   L  ++E+RK     I  SV+    +I+G+CK  R++ A +++ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRK---CGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +  KPD + Y  +   +  +G++     + +K  K GV P    Y   I GL  E+
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+ +A EL E ++      D+     LI G     +   A+   + MI KG +P + T S
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM------------VSFL---CTSG 414
            L   L K  ++ E   +   L   D   D   Y+ +            V+ L   C  G
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  V Q M  +    D S Y+ L+   CR   +R A     QM  SG S N  +  
Sbjct: 568 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTI 627

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
            L+    E G +  A     ++L      DA    +L++
Sbjct: 628 SLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALID 666



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y   + +YN ++  L +   L  A   +  M R G+ P+V  YN L+ A C    L  A 
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEG 514
            +   M  +GC+ N  TYN L++ F   GE++GA R+   M E+G A P+  T+ S++ G
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 515 LCQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFLVATKLL-RGLSSD 569
           LC+   ++ A +VF++ V      DV+   ++LS +    C      V +++  RGL  D
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629
           +    S   L+ +   A  +E A+  +  ++E    M +     L        + +  LL
Sbjct: 293 VVTFTS---LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 630 LLHALQEKC 638
            +  ++ KC
Sbjct: 350 AVEEMR-KC 357


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 203/451 (45%), Gaps = 19/451 (4%)

Query: 158 NSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N +L  L   G    AL++F  EM+  GV  + + +   I   C++  LG  + + +E+ 
Sbjct: 5   NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           +R +      V    +I   CK   +EEA ++  ++  R C P+ + Y ++      +G 
Sbjct: 65  ERGHH--PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122

Query: 277 VFE-REVVLKKKRK-LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           + E RE++ +  RK   V P    Y  F+ GL  +    EA EL   +  G   +  D +
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 335 --NALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             + LI  +     ID   ++  F+ MI  G VP + T + L   LCK +K +    + +
Sbjct: 183 TFSTLIDGLCKCGQIDEACSV--FDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-----LDPDVSFYNSLMEA 444
            +       D+ +Y+V+V   C + R+ EA  ++  M  +G     L PD   +N L+  
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAG 300

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+      A  L+++M A     ++ T+  LI    + G++E A  +   M   GV P+
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY +L+ GLC+   ++ A +   + V+   +       + + +LCR      A +L+ 
Sbjct: 361 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVS 420

Query: 565 GLSSDLGHSD--SHVILLKSLADAREVEMAI 593
            L S     D  ++ IL+  L  + + E AI
Sbjct: 421 ELKSFGWDPDTVTYNILVDGLWKSGKTEQAI 451



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 210/500 (42%), Gaps = 12/500 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  F     +     + ++Y++I+  L  S  + A   + +++       D   Y  +I
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
            SL +  + ++A  +  +   +     P +   + L+  L   G ID A ++  EM+ + 
Sbjct: 80  DSLCKAGDLEEARRLHGD--MSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 137

Query: 185 VEF--STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
            +   + I +  F+   C+ +   +   ++  +R     +   +V    +I G CK  ++
Sbjct: 138 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI 197

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           +EA  V D++      P+ I Y  +         +     +++     GV P    Y   
Sbjct: 198 DEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 257

Query: 303 ILGLIVERRICEAKELGEVIVSGKFT----IDDDV-LNALI-GSVSSIDPRSAIVFFNFM 356
           +       R+ EA EL   + S   T    + D V  N LI G+  + +   A   F  M
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEM 317

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + K   P + T   L   LCK  + +   ++  ++       ++ +YN +V  LC SGR+
Sbjct: 318 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 377

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA   ++EM   G  PD   Y SL+ A CR      A +L  ++ + G   +  TYNIL
Sbjct: 378 EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNIL 437

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +    + G+ E A+ +   M+ KG  PD+ T+ +   GL +  NL    E+    +   +
Sbjct: 438 VDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGM 497

Query: 537 MLARSILSTFMISLCRRGHF 556
           +   +  S+ +  +CR G  
Sbjct: 498 LPDATTCSSILDWVCRSGKL 517



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 12/257 (4%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+  +F   M   G  PT+ T + +   LCK N     +E+++ L    +  D+ +YN +
Sbjct: 19  RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTL 78

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC +G L EA  +  +M  +G  P+V  Y+ L+   C+   +  A++L  +M    C
Sbjct: 79  IDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 138

Query: 467 S--GNLKTYNILISKFSEVGEIEGALRLFHNMLEKG--VAPDATTYTSLLEGLCQETNLQ 522
               N+ TYN  +    +      A  L  ++ +    V+PD  T+++L++GLC+   + 
Sbjct: 139 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQID 198

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCR-----RGHFLVATKLLRGLSSDLGHSDSHV 577
            A  VF+  +    +      +  +  LC+     R H ++ + + +G++ D+    ++ 
Sbjct: 199 EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDV---ITYS 255

Query: 578 ILLKSLADAREVEMAIE 594
           +L+ +   A  V+ A+E
Sbjct: 256 VLVDAFCKASRVDEALE 272



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 162/386 (41%), Gaps = 10/386 (2%)

Query: 78  PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN--KITLDSSVYRFIIPSLIQGKNT 135
           PN     ++Y+S L  L           +++ ++    +++ D+  +  +I  L +    
Sbjct: 142 PNI----ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI 197

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            +A SVF+++            N+L+  L     ++ A  M + M  +GV    I + V 
Sbjct: 198 DEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 257

Query: 196 IWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           +  FC+ +++ + L +L  +  R    N ++   V   ++I G CK    E+A  + +E+
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEM 317

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             +  +PD + +  + +     G V     +L     LGV P    Y   + GL    RI
Sbjct: 318 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 377

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA +  E +VS     D     +L+ ++        A+   + +   G  P   T + L
Sbjct: 378 EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNIL 437

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              L K  K+++ + V + +    +  D  ++    S L  SG L     +++ +  KG+
Sbjct: 438 VDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGM 497

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKL 457
            PD +  +S+++  CR   L   K +
Sbjct: 498 LPDATTCSSILDWVCRSGKLDDVKAM 523


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/540 (20%), Positives = 227/540 (42%), Gaps = 43/540 (7%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S  LGFF+  +    F H+  +Y  +++ L    +++ +  +L+Q+K++ I     ++  
Sbjct: 55  SSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC 114

Query: 125 IIPSLIQGKNTQKAFSVFNEV-KFNCED--------------------IGPEICNS---- 159
           II    +  + ++A  +F  + +F C+                     I P   N     
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 160 ----------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                     LL  L  +  +D A K+F EMS++G     + +   +   C+  K+    
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI---- 230

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
              D+ R+          +   +I G CK  R+E A K+L E+      P+ ++Y  +  
Sbjct: 231 ---DDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
              + G+V     +  +    G     + +   I G  +  ++ EA +L ++++      
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +    N LI G  S+     A+   + M   G +P ++T S L     K        E +
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             + ++    ++ +Y  MV  LC +    +A  ++++M  +G  P+   +N+ ++  C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A KL ++M   GC  N+ TYN L+     + + E A  LF  +  + + P+  TY
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++L G  +   +  A ++F K++           +T + + C++G   +A +L+  +SS
Sbjct: 528 NTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 174/424 (41%), Gaps = 6/424 (1%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S   Y++++  +    +I     +L ++  N +  +   Y  II SL    N + AF
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           ++F ++     D        L+      G +  AL ++  M   G E + + +   I   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C N  L + L + D++ +R   + N +  ++LI  GF K   +  A +  + +    C+P
Sbjct: 360 CSNGSLEEALQVCDQM-QRSGCLPNVTTYSILI-DGFAKSGDLVGASETWNRMISHGCRP 417

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKEL 318
           + + Y  + +      S+F++   L +K  L G  P T  +  FI GL    R+  A +L
Sbjct: 418 NVVTYTCMVDVL-CKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL 476

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E +       +    N L+ ++  ++    A   F  +  +   P L T + +     +
Sbjct: 477 LERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVS 436
                E ++++          D  +YN M+   C  G+++ A  +++ +   K   PD+ 
Sbjct: 537 AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDII 596

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y SL+   C    +  A    D+    G   N  T+N L+  F +     G + +  ++
Sbjct: 597 TYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDI 656

Query: 497 LEKG 500
           L KG
Sbjct: 657 LRKG 660



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%)

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           RN S  L     + ++N +     +Y VM+  L     +     ++Q+MK  G++     
Sbjct: 52  RNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL 111

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +  ++    R      A K++ ++   GC   ++ YN L+       + +    L+ NM 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           + G+ P+  TY  LL+ LC+   + AA ++F +  N          +T + SLC+ G
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG 228


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 177/374 (47%), Gaps = 3/374 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L  +G + +A+ + D M   G + + + +G  +   C++ +    + +L ++ +
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE 240

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R+  +   +V   +II G CK   ++ AF + +E+ I+  K D I Y  +   F   G  
Sbjct: 241 RKIKL--DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L+   K  + P    +   I   + E ++ EA+EL + ++    + D     +L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A    + M+ KG  P + T + L    CK N  D+ +E+++ +S    
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +YN ++   C  G+L  A  + QEM  + + PD+  Y  L++  C       A +
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +++++  S    ++  YNI+I       +++ A  LF ++  KGV PD  TY  ++ GLC
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC 538

Query: 517 QETNLQAAFEVFNK 530
           ++ +L  A  +F K
Sbjct: 539 KKGSLSEADLLFRK 552



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 177/399 (44%), Gaps = 7/399 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L +V+A     D  L +  +M  +G+  +     + I   C   KL    S + ++ K  
Sbjct: 78  LFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLG 137

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                 +V    +I+G C   RV EA +++D +     KP  I    +     L G V +
Sbjct: 138 YE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSD 195

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +++ +  + G  P    Y   +  +    +   A EL   +   K  +D    + +I 
Sbjct: 196 AVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255

Query: 340 SV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
            +    S+D  +A   FN M  KG    +   + L +  C   + D+  ++ + +     
Sbjct: 256 GLCKDGSLD--NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +++ ++      G+LREA  + +EM ++G+ PD   Y SL++  C+E+ L  A  
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + D M + GC  N++T+NILI+ + +   I+  L LF  M  +GV  D  TY +L++G C
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           +   L+ A E+F + V+  V          +  LC  G 
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 230/545 (42%), Gaps = 39/545 (7%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV 110
           L  +V +  LL    +  GF      QPN     ++Y  +LK +  S Q      +L+++
Sbjct: 189 LNGKVSDAVLLIDRMVETGF------QPN----EVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           +  KI LD+  Y  II  L +  +   AF++FNE++         I  +L+      G  
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+  K+  +M  R +    + F   I  F +  KL +   +  E+ +R  S    +V   
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS--PDTVTYT 356

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I GFCK  ++++A  +LD +  + C P+   + I+   +     + +   + +K    
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV   T  Y   I G     ++  AKEL + +VS +   D      L+ G   + +P  A
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 350 IVFFNFMIEKGRVPTLSTLSN-LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           +  F   IEK ++     + N +   +C  +K D+  +++  L       D+++YN+M+ 
Sbjct: 477 LEIFE-KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ-------- 460
            LC  G L EA  + ++M+  G  P+   YN L+ A   E     + KL ++        
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSV 595

Query: 461 --------------MFASGCSGNLKTYNILISKF--SEVGEIEGALRLFHNMLEKGVAPD 504
                         M  +G   ++ T+  L+  F   E   +  A  LF NM   G  P+
Sbjct: 596 DASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPN 655

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY ++++GL     +     V ++             STF+  LC++     A  LLR
Sbjct: 656 VVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLR 715

Query: 565 GLSSD 569
            + +D
Sbjct: 716 KMEND 720



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 5/236 (2%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    A+  F  M      P L   S L   + +  + D ++++ K +       +
Sbjct: 47  GIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHN 106

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + ++M++  C   +L  A+  + ++ + G +PD   +++L+   C E  +  A +L D
Sbjct: 107 LYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD 166

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M   G    L T N L++     G++  A+ L   M+E G  P+  TY  +L+ +C+  
Sbjct: 167 RMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSG 226

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
               A E+  K     + L     S  +  LC+ G    A  L     ++G  +D+
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 181/421 (42%), Gaps = 36/421 (8%)

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           + A  + +E+     +    +  S++A+L + G + +AL++ ++M+  GV    + F   
Sbjct: 304 ENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTV 363

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I  FC    L     + +E++KR   +    V    +I+G C+   ++EA +VL E+  +
Sbjct: 364 ISGFCSKGDLAAARRLFEEMQKR--GLAADRVTHTALINGLCRAGELKEADRVLQEMVDK 421

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
               D + Y ++ + +   G++ E   V  +     VAP    Y     GL  +      
Sbjct: 422 GLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ------ 475

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              G+V                         R+A    + M  KG    + T ++L   L
Sbjct: 476 ---GDV-------------------------RAANELLHEMCNKGLELNVYTYNSLINGL 507

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK    ++ + +   + A  + TD+ +Y  ++  LC SG    A+ ++QEM  KG+ P +
Sbjct: 508 CKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSI 567

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           + YN LM   C    +   KKL + M       N+ TYN L+ ++     ++    ++  
Sbjct: 568 ATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKG 627

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M  + VAP+  TY  L++G C+  N++ A     + +   + L  S  S  +  L ++  
Sbjct: 628 MHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKK 687

Query: 556 F 556
           F
Sbjct: 688 F 688



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 190/441 (43%), Gaps = 47/441 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L S G + +A + FDEMS        + +G  +  +C   +L   + +LDE+  
Sbjct: 259 NILLKALLSAGRLKDACQHFDEMSSPP---DVVTYGTMVHGYCVRGELENAVKLLDEMAA 315

Query: 218 R---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +    N+ +  SVIA+L     C   +V +A +VL+++ +     D + +  V   F   
Sbjct: 316 KGLESNATVYTSVIALL-----CNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSK 370

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +     + ++ +K G+A     +   I GL      C A EL E          D VL
Sbjct: 371 GDLAAARRLFEEMQKRGLAADRVTHTALINGL------CRAGELKEA---------DRVL 415

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
             ++     +D    +V +  +I+                 CKR    E   V+  +   
Sbjct: 416 QEMVDKGLDVD----VVTYTVLID---------------GYCKRGNMVEAFRVHNEMVGR 456

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +Y  +   LC  G +R A  ++ EM  KGL+ +V  YNSL+   C+   L  A
Sbjct: 457 RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQA 516

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++  +M A+G   ++ TY  LI    + GE + A  +   ML+KG+ P   TY  L+ G
Sbjct: 517 MRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNG 576

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGH 572
            C    ++   ++    +  +V       ++ M   C   +    T++ +G+ S     +
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 573 SDSHVILLKSLADAREVEMAI 593
            +++ IL+K    AR ++ A+
Sbjct: 637 ENTYNILIKGHCKARNMKEAL 657



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/485 (20%), Positives = 199/485 (41%), Gaps = 39/485 (8%)

Query: 66  LALGFFNWASQQPNFTHSP---LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           L+ G    A Q  +   SP   ++Y +++    +  ++     +L ++    +  +++VY
Sbjct: 266 LSAGRLKDACQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVY 325

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
             +I  L        A  V  ++  +   +   +  ++++   S G +  A ++F+EM  
Sbjct: 326 TSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQK 385

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           RG+    +     I   C   +L +   +L E+  +   +    V   ++I G+CK   +
Sbjct: 386 RGLAADRVTHTALINGLCRAGELKEADRVLQEMVDK--GLDVDVVTYTVLIDGYCKRGNM 443

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EAF+V +E+  R   P+ + Y  +++     G V     +L +    G+      Y   
Sbjct: 444 VEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSL 503

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
           I GL      C+   L +                            A+     M   G  
Sbjct: 504 INGL------CKFGNLEQ----------------------------AMRIMTEMEAAGHR 529

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
             + T + L   LCK  + D    + + +        + +YNV+++  C SGR+     +
Sbjct: 530 TDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKL 589

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++ M  K + P+V  YNSLM+  C +  ++   +++  M +   + N  TYNILI    +
Sbjct: 590 LEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCK 649

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              ++ AL     M+EKG+   A++Y++L+  L ++     A   F+K  N  +     +
Sbjct: 650 ARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDV 709

Query: 543 LSTFM 547
            S +M
Sbjct: 710 YSFYM 714


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/598 (22%), Positives = 259/598 (43%), Gaps = 55/598 (9%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W   +E  L +L L  +  P LV  V+    L   + A+ +F WA +  +  H   +Y+S
Sbjct: 80  WGSSVENRLAELDLNPN--PELVIGVLRR--LKDVNNAVNYFRWAERLTDRAHCREAYNS 135

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS---VFNEVK 146
           +L  ++ +R+ N ++ +L+++ +      ++    I+ S I+ +  ++AF+      ++K
Sbjct: 136 LLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLK 195

Query: 147 F--------------------NC--------EDIGPEI----CNSLLAVLASDGYIDNAL 174
           F                    +C        +++G  +      +L+ V A +G +D AL
Sbjct: 196 FRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAAL 255

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            + DEM    +E   + + V I  F +  K+        E++   N ++   V    +I 
Sbjct: 256 SLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKA--NGLVLDDVTYTSMIG 313

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             CK  R+ EA ++ + +   +  P   AY  +   + + G   +   +L+++R+ G  P
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 295 RTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDD-DVLNALIGSVSSIDP-RSAIV 351
               Y   +  L  + ++ EA K+  E+    K  I +    N +I  +       +A+V
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEM---KKDAIPNLSTYNIMIDMLCKAGKLETALV 430

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
             + M + G  P + T++ +   LCK  + D+   +++ L       D  +Y  ++  L 
Sbjct: 431 VRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG 490

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLME---ACCREDLLRPAKKLWDQMFASGCSG 468
             GR+ EAY + ++M      P+   Y SL+     C R++      K++++M   GCS 
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE---DGHKIYNEMLRLGCSP 547

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +L   N  +    + GEIE    LF  +   G  PDA +YT L+ GL +      A+E+F
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
                   +L     +T +   C+ G    A +LL  + +  GH  + V+   S+ D 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GHEPT-VVTYGSVIDG 663



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/520 (22%), Positives = 226/520 (43%), Gaps = 20/520 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +SY+ IL  L    Q++      +++K + I  + S Y  +I  L +    + A  V 
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVR 432

Query: 143 NEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           + +K    D G  P +   N ++  L     +D+A  +F+ + H+      + +   I  
Sbjct: 433 DAMK----DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
              + ++ +   + +++   + + I  +V+   +I  F K  R E+  K+ +E+    C 
Sbjct: 489 LGRHGRVDEAYKLYEQML--DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCS 546

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD +      +     G + +   + ++ + LG  P    Y   I GL+      EA EL
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              +      +D    N +I G   S     A      M  KG  PT+ T  ++   L K
Sbjct: 607 FYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++E+ +KGL P+V  
Sbjct: 667 IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT 726

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +N L++A  + + +  A   +  M    C+ N  TY+ILI    ++ +   A   +  M 
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           ++G  P+  TYT+++ GL +  N+  A  +F K      +   +I +  +  L       
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846

Query: 558 VATKL-----LRGLSSDLGHSDSHVILLKSLADAREVEMA 592
            A +L     L+G S    ++ + V+LL SL  A  +E A
Sbjct: 847 DAYRLFEEARLKGCSI---YTKTCVVLLDSLHKAECIEQA 883



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 201/453 (44%), Gaps = 20/453 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + ++N    + + +  NK    +  Y  +I         + A+S+   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCE 201
            +   +   P +   N +L+ L   G +D ALK F+EM    +   ST  + + I   C+
Sbjct: 366 QRR--KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLST--YNIMIDMLCK 421

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             KL   L + D ++   ++ +  +VI V +++   CK +R+++A  + + L  + C+PD
Sbjct: 422 AGKLETALVVRDAMK---DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPD 478

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  + E     G V E   + ++       P    Y   I         C  KE G 
Sbjct: 479 AVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK----CGRKEDGH 534

Query: 321 VIVSGKFTI----DDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            I +    +    D  +LN  +  V  + +       F  +   G +P   + + L   L
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K   + E  E++  +       D  +YN ++   C SG++ +AY +++EMK KG +P V
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y S+++   + D L  A  L+++  + G   N+  Y+ LI  F +VG I+ A  +   
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEE 714

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +++KG+ P+  T+  LL+ L +   +  A   F
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 1/282 (0%)

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C  + L E+ ++G    ++  +  ++  + S   R A  F   M +    P  S  +NL 
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLI 207

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L     SD ++ +++ +    Y  ++  +  ++      GR+  A  ++ EMK   L+
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PDV  YN  ++   +   +  A K + +M A+G   +  TY  +I    +   +  A+ L
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F +M +    P A  Y +++ G       + A+ +  +      + +    +  +  L R
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387

Query: 553 RGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAI 593
           +G    A K    +  D + +  ++ I++  L  A ++E A+
Sbjct: 388 KGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETAL 429


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 191/414 (46%), Gaps = 9/414 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL+ ++     D  + ++++M   G+  +     + +  FC  ++L   LS L ++ K  
Sbjct: 87  LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLG 146

Query: 218 RENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E S++  GS     +++GFC+G RV +A  + D++     KP+ + Y  + +       
Sbjct: 147 HEPSIVTFGS-----LLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V     +L +  K G+ P    Y   I GL    R  +A  +   +   +   D    NA
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNA 261

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI   V       A  F+  MI +   P + T S L   LC  ++ DE  E++  + +  
Sbjct: 262 LIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F D+ +Y+++++  C S ++     +  EM ++G+  +   Y  L++  CR   L  A+
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +++ +M   G   N+ TYN+L+    + G+IE AL +  +M + G+  D  TY  ++ G+
Sbjct: 382 EIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGM 441

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           C+   +  A++++       +M      +T M+ L ++G    A  L R +  D
Sbjct: 442 CKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKED 495



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 3/312 (0%)

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           L K  KLG  P    +   + G     R+ +A  + + +V   +  +  + N +I G   
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S    +A+   N M + G  P + T ++L   LC   +  +   +   ++  + + D+ +
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N ++      GR+ EA    +EM R+ LDPD+  Y+ L+   C    L  A++++  M 
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + GC  ++ TY+ILI+ + +  ++E  ++LF  M ++GV  +  TYT L++G C+   L 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN 378

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILL 580
            A E+F + V   V       +  +  LC  G    A  +L  +  +   +D  ++ I++
Sbjct: 379 VAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIII 438

Query: 581 KSLADAREVEMA 592
           + +  A EV  A
Sbjct: 439 RGMCKAGEVADA 450



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 129/257 (50%), Gaps = 2/257 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+  G  P +   + +   LCK  + D  +++   +  +    D+ +YN ++S
Sbjct: 170 ALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS 229

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC+SGR  +A  ++  M ++ + PDV  +N+L++AC +E  +  A++ +++M       
Sbjct: 230 GLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP 289

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY++LI        ++ A  +F  M+ KG  PD  TY+ L+ G C+   ++   ++F
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
            +     V+      +  +   CR G   VA ++ R +     H +  ++ +LL  L D 
Sbjct: 350 CEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDN 409

Query: 587 REVEMAIEHIKWIQESS 603
            ++E A+  +  +Q++ 
Sbjct: 410 GKIEKALVILADMQKNG 426



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 11/351 (3%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SLL        + +AL MFD+M   G + + + +   I   C++    QV + LD + + 
Sbjct: 156 SLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSK---QVDNALDLLNRM 212

Query: 219 ENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           E   I   V+    +I G C   R  +A +++  +  RE  PD   +  + +     G V
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E   ++  +  + P    Y   I GL +  R+ EA+E+   +VS     D    + L
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   S      +  F  M ++G V    T + L +  C+  K +   E+++ +     
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV 392

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YNV++  LC +G++ +A  ++ +M++ G+D D+  YN ++   C+   +  A  
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA-- 450

Query: 457 LWDQMFASGCSG---NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            WD   +  C G   ++ TY  ++    + G    A  LF  M E G+ P+
Sbjct: 451 -WDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           +FF+ M++   +P+++  S L   + K  K D ++ +++ +       ++ + N++++  
Sbjct: 68  LFFH-MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCF 126

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   +L  A   + +M + G +P +  + SL+   CR D +  A  ++DQM   G   N+
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNV 186

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
             YN +I    +  +++ AL L + M + G+ PD  TY SL+ GLC
Sbjct: 187 VIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLC 232



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P ++ ++ L+ A  +         LW+QM   G   NL T NIL++ F    ++  AL  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M++ G  P   T+ SLL G C+   +  A  +F++ V         I +T +  LC+
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 553 RGHFLVATKLLRGLSSD 569
                 A  LL  +  D
Sbjct: 199 SKQVDNALDLLNRMEKD 215


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 193/457 (42%), Gaps = 45/457 (9%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LAL  F +A + QPNF+H+  +Y SI+  LS +R    ++ +L  +  ++I    +++  
Sbjct: 76  LALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFIN 135

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +I                               N  LA     G  D AL+ F  +    
Sbjct: 136 VIR------------------------------NYGLA-----GKPDFALRTFIRIQDFN 160

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V+ S       +  F +N +   V +M    R +   + N     +L I   CK   VE 
Sbjct: 161 VQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNIL-IKALCKKNDVES 219

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A KVLDE+      P+ + Y  +   +   G +     V  +    G  P    Y   + 
Sbjct: 220 AVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMN 279

Query: 305 GLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
           G   + R+ +A     ++GE  V         ++ A      + + R+     + M+E+ 
Sbjct: 280 GYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARN---LLDDMLERQ 336

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            VP+ +    +   LC+  K +E  E++K +   +   D    + ++ +LC  G++ EA 
Sbjct: 337 YVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEAR 396

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  E +R G  P +  YN+L+   C +  L  A KLWD M   G   N  TYN+LI  F
Sbjct: 397 KLFGEFER-GAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGF 455

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           S++G  +  +R+   ML+    P+ +TY  L+E LC+
Sbjct: 456 SKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCK 492



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           +F N   + G +P + T + L K LCK+N  +  V+V   + A     ++ +Y  ++   
Sbjct: 187 MFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGY 246

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
            + G +  A  V  E+  +G  PD + Y  LM   C +  L  A KL D M  +G   N 
Sbjct: 247 SSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNE 306

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY +++  + +  +   A  L  +MLE+   P +     +++ LC+   ++ A E++ +
Sbjct: 307 VTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKR 366

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            +  + M   +I+ST +  LC+ G    A KL 
Sbjct: 367 MLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLF 399


>gi|359476071|ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 629

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 202/483 (41%), Gaps = 73/483 (15%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+++L+  G    A  +F  +  +G       +   +W  C+  +    L++L  ++K
Sbjct: 84  NLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKK 143

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                ++ +     +++GF K    EEAF +LDE++I  CKP+ I Y ++ +     G +
Sbjct: 144 M--GAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRI 201

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L K  K G  P    Y   +  L  + R  E  EL +VI   + + D     AL
Sbjct: 202 GDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAAL 261

Query: 338 IGSV--------------------SSIDPRSAIVFFNF----------------MIEKGR 361
            G +                     ++D     ++F+                 M+EKG 
Sbjct: 262 TGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGL 321

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS------------- 408
           VPT  + + +    C+ N  DE ++++      +   D+ S+N ++S             
Sbjct: 322 VPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRR 381

Query: 409 ----------------------FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
                                 + C  G++ E   +++ M R GL+P V  +N L++  C
Sbjct: 382 VLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLC 441

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +  LL  A +++ +   +G   N  +YNILI      G      +L  +M    + PDA 
Sbjct: 442 KNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAV 501

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY S ++GLC+E  +  A ++ ++ +   +    +I +T + ++ +RG F     LL+ +
Sbjct: 502 TYGSFIKGLCKEGKISVAIQLRDQMLESGLTPTITIYNTILAAMFQRGKFWDIVSLLKDM 561

Query: 567 SSD 569
           + D
Sbjct: 562 TMD 564



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 44/320 (13%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           + ++    C   K G+ LS+L  +   E  ++  +V    I++GFC+   ++EA ++ D 
Sbjct: 293 YNIYFHCLCRENKSGEALSLLQSMV--EKGLVPTNVSYNTILNGFCRENHIDEALQLFDH 350

Query: 252 LRIRECKPDFIAYR-IVAEEFKLMGSVFEREVVLKKKR---KLGVAPRTNDYREFILGLI 307
                  PD +++  I++   K   S   R V+ + +    KL V   T   + F     
Sbjct: 351 FEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYF----- 405

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
                                         IG +S       +     MI  G  PT+ T
Sbjct: 406 ----------------------------CAIGKISE-----CLELLESMIRNGLNPTVVT 432

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + L   LCK         +++      YF +  SYN+++      G       ++++M 
Sbjct: 433 FNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMY 492

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
              L PD   Y S ++  C+E  +  A +L DQM  SG +  +  YN +++   + G+  
Sbjct: 493 SWRLKPDAVTYGSFIKGLCKEGKISVAIQLRDQMLESGLTPTITIYNTILAAMFQRGKFW 552

Query: 488 GALRLFHNMLEKGVAPDATT 507
             + L  +M   G  P+A +
Sbjct: 553 DIVSLLKDMTMDGCEPNAVS 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 3/237 (1%)

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           FT    +L   +G  S +D  S    F FM+     PT  TL+ L   L K   + E   
Sbjct: 45  FTSLLKILKKWLGLGSLVDSMSV---FEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHF 101

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V++VL          SYN ++  LC  G+   A  ++  +K+ G   + + Y +L+    
Sbjct: 102 VFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFS 161

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E L   A  + D+M   GC  N+ TY +++    + G I  AL +   M ++G  PD  
Sbjct: 162 KEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIV 221

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           TY  +L  L  +       E+       ++       +     L +R    VA KLL
Sbjct: 222 TYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRDQVRVANKLL 278



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 87/194 (44%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L G  S+ + R+A  F   M   G +P+ ++L  + K         + + V++ +   +Y
Sbjct: 17  LDGMTSTGNLRAAFFFAEEMWRSGFLPSFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEY 76

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F    + N+++S L  +G  REA+ V + +  KG       YN ++ A C+      A  
Sbjct: 77  FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 136

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   +   G   N  +Y  L+  FS+ G  E A  +   M   G  P+  TYT +++ LC
Sbjct: 137 LLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLC 196

Query: 517 QETNLQAAFEVFNK 530
            E  +  A ++  K
Sbjct: 197 DEGRIGDALDILGK 210



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS-------------------- 436
           + +  ++N+++  + ++G LR A+   +EM R G  P  +                    
Sbjct: 7   YPNASTFNILLDGMTSTGNLRAAFFFAEEMWRSGFLPSFTSLLKILKKWLGLGSLVDSMS 66

Query: 437 ---------------FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
                            N L+    +  + R A  ++  +   GC     +YN ++    
Sbjct: 67  VFEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALC 126

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           + G+   AL L +++ + G   +A +YT+L+ G  +E   + AF
Sbjct: 127 KCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAF 170


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 159/334 (47%), Gaps = 2/334 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVL-DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
           +++   C   + EEA  V+ D++R   C P+ + Y  +   F   G V   E ++   R+
Sbjct: 159 ILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMRE 218

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
            GV P    +   + GL    R+ +A+++ + +     T D    N L+ G   +     
Sbjct: 219 GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHE 278

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M +KG VP + T ++L   +C+    +  V +   +       +  ++  ++ 
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C +G L +A   ++EM+   + P V  YN L+   C+   +  A++L  +M A G   
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY+ ++S + ++G+ + A  L   ML+KGV PDA TY+SL+ GLC+E  L  A E+F
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            K +   +       +T +   C+ G+   A  L
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 180/412 (43%), Gaps = 5/412 (1%)

Query: 158 NSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N L+  L + G  + AL +  D+M   G   + + +   +  FC   ++     ++  +R
Sbjct: 158 NILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMR 217

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             E  +    V    +++G CK  R+E+A K+ DE+      PD ++Y  +   +   G 
Sbjct: 218 --EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E   V  +  + GV P    +   I  +     +  A  L   +      +++    A
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G   +     A++    M E    P++   + L    CK  + DE  E+   + A  
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y+ ++S  C  G    A+ + ++M +KG+ PD   Y+SL+   C E  L  A 
Sbjct: 396 MKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+++M   G   +  TY  LI    + G ++ AL L   M++KGV PD  TY+ L++GL
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            +    + A  +  K    D  +  +I    ++  CR   F     LL+G S
Sbjct: 516 SKSARTKEAQRLLFKLYYEDP-VPDNIKYEALMHCCRTAEFKSVVALLKGFS 566



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 196/464 (42%), Gaps = 62/464 (13%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++  L   G +++A KMFDEM+  G+    + +   +  +C+   L + L++  E+ +
Sbjct: 229 NTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQ 288

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   ++   V    +IH  C+   +E A  ++ ++R R  + +   +  + + F   G +
Sbjct: 289 K--GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFL 346

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +  + +K+ R+  + P    Y   I G     R+ EA+EL                   
Sbjct: 347 DDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEAREL------------------- 387

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                           + M  KG  P + T S +    CK   +D   E+ + +      
Sbjct: 388 ---------------IHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVV 432

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  +Y+ ++  LC   RL +A  + ++M + GL PD   Y +L++  C+E  ++ A  L
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY--------- 508
            D+M   G   ++ TY++LI   S+    + A RL   +  +   PD   Y         
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRT 552

Query: 509 ------TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA--- 559
                  +LL+G   +  +  A +V+   ++    L  S+ S  +   CR G+ + A   
Sbjct: 553 AEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSF 612

Query: 560 -TKLLR-GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
             +LLR G S +   S S + L++ L    E  M +E    IQE
Sbjct: 613 HKQLLRCGFSPN---STSTISLVRGLF---EEGMTVEADNVIQE 650



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSA 393
           NA++ ++S     SA      M+  G  P + T + L + LC R + +E + V    +  
Sbjct: 124 NAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRG 183

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN +V+  C +G +  A  ++  M+  G+ P +  +N+++   C+   +  
Sbjct: 184 AGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMED 243

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+K++D+M   G + +  +YN L+S + + G +  AL +F  M +KGV PD  T+TSL+ 
Sbjct: 244 ARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIH 303

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF---LVATKLLR 564
            +C+  NL+ A  +  +     + +     +  +   CR G     L+A K +R
Sbjct: 304 AMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR 357



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/449 (20%), Positives = 182/449 (40%), Gaps = 59/449 (13%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +++++++  L  + ++     +  ++    +T D   Y  ++    +     +A +VF
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVF 283

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+    + + P++    SL+  +   G ++ A+ +  +M  RG+  +   F   I  FC
Sbjct: 284 AEMAQ--KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFC 341

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            N  L   L  + E+R+     I  SV+   ++I+G+CK  R++EA +++ E+  +  KP
Sbjct: 342 RNGFLDDALLAMKEMRE---CRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  +   +  +G       + +K  K GV P    Y   I GL  ERR+ +A EL 
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E ++      D+     LI G     + + A+   + MI+KG +P + T S L   L K 
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518

Query: 379 NKS--------------------------------------------------DELVEVY 388
            ++                                                  ++  +VY
Sbjct: 519 ARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVY 578

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + +    +  D   Y+V++   C  G + +A    +++ R G  P+ +   SL+     E
Sbjct: 579 QSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEE 638

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            +   A  +  ++       + +T   LI
Sbjct: 639 GMTVEADNVIQELLNCCSLADAETSKALI 667



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  P +  YN+++ A   +  L  A++L   M   G + N+ TYNIL+      G+ E A
Sbjct: 115 GYAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 490 LRLF-HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           L +   +M   G AP+  TY +L+   C+   + AA  +        V  +    +T + 
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 549 SLCRRGHFLVATKLL-----RGLSSD 569
            LC+ G    A K+       GL+ D
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPD 259


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/579 (22%), Positives = 246/579 (42%), Gaps = 15/579 (2%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           L P +V  V+    L+    A+ F+ WA  +P F HS  +   I+  L +      +   
Sbjct: 85  LDPFVVNLVVRG--LSDSETAVRFYWWAESRPGFDHSQFAIAYIVSLLFVDGNFALLSEF 142

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLA 165
           L  V+   + L  S+YR ++   ++          F+E V   C + G +  N  + VL 
Sbjct: 143 LGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDY-NRYIGVLI 201

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
            +   D   K +     +G+  +   +  +I   C++ ++  V  +L ++ +   S    
Sbjct: 202 KNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFS---P 258

Query: 226 SVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            + A  + I   CK  R+ +A ++++++R +   PD + Y  V           E   + 
Sbjct: 259 DIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLW 318

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---V 341
           ++  K+G+ P        I GL    ++ EA EL   ++S    +   + NALI      
Sbjct: 319 EEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRA 378

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            SID    I+  +FM   G  P + T + L  + C     ++   +   +  +    D  
Sbjct: 379 GSIDKAYTII--SFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRY 436

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYN ++  LC + +L +A+  + +    G   D+   N L++A C+   ++ A +L+ +M
Sbjct: 437 SYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEM 496

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   +  TY  LI+    VG    A  LF  ML+  + P+   Y  +L  LC+  +L
Sbjct: 497 DYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDL 556

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--L 579
           + A ++F   +  +++      +T +  L +    + A  L + + +     DS     L
Sbjct: 557 KRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYL 616

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618
           +  L D     +A E  +++ E+   + +E+S  L + L
Sbjct: 617 INGLLDEGRSTLAYEVWEYMMENGIILDREVSERLISVL 655


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 157/327 (48%), Gaps = 2/327 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++   C   R+EEA  V+ ++R   C P+ + Y  +   F   G +   E V+   R+ 
Sbjct: 157 ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 291 GVA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RS 348
           G A P    +   + GL    R+  A+++ + +V      D    N L+     +     
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           ++  F+ M ++G VP + T ++L    CK    ++ V +   +       +  ++  ++ 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G L +A   ++EM++ G+ P V  YN+L+   C+   +  A++L  +M A     
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY+ +IS + +VG ++ A +L   ML+KGV PDA TY+SL+ GLC+E  L  A E+F
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGH 555
              +   V       +T +   C+ G+
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGN 483



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 181/410 (44%), Gaps = 3/410 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L + G ++ A+ +  +M   G   + + +   +  FC   +L     ++  +R+
Sbjct: 156 NILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             N+  N  V    +++G CK  R+E A KV DE+      PD ++Y  +   +  +G +
Sbjct: 216 EGNAKPN-LVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   V  +  + G+ P    +   I        + +A  L   +      +++    AL
Sbjct: 275 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 334

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A++    M + G  P++   + L    CK  + D   E+ + + A   
Sbjct: 335 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 394

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y+ ++S  C  G L  A+ + Q+M +KG+ PD   Y+SL+   C E  L  A +
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L++ M   G   +  TY  LI    + G +E AL L   M+ KGV PD  TY+ L+ GL 
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +    + A  +  K + H+  +  +I    ++  C +  F     LL+G 
Sbjct: 515 KSARTKEAHRLLFK-LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 563



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 203/474 (42%), Gaps = 28/474 (5%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
            + +PN     ++++S++  L  + ++     V  ++    +  D   Y  ++    +  
Sbjct: 217 GNAKPNL----VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 272

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
              ++ +VF+E+      + P++    SL+      G ++ A+ +  +M  RG+  + + 
Sbjct: 273 CLHESLAVFSEMTQ--RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLD 250
           F   I  FC+   L   L  ++E+RK     I  SV+    +I+G+CK  R++ A +++ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRK---CGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +  KPD + Y  +   +  +G++     + +K  K GV P    Y   I GL  E+
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+ +A EL E ++      D+     LI G     +   A+   + MI KG +P + T S
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM------------VSFL---CTSG 414
            L   L K  ++ E   +   L   D   D   Y+ +            V+ L   C  G
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  V Q M  +    D S Y+ L+   CR   +R A     QM  SG S N  +  
Sbjct: 568 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTI 627

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            L+    E G +  A     ++L      DA    +L++   +E N+ A  +V 
Sbjct: 628 SLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVL 681



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           NA++ ++S     SA  F + M+  G  P + T + L + LC R + +E V V   +   
Sbjct: 122 NAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGA 181

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRP 453
               +  +YN +V+  C +G L  A  V+  M+ +G   P++  +NS++   C+   +  
Sbjct: 182 GCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEG 241

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+K++D+M   G + ++ +YN L+S + +VG +  +L +F  M ++G+ PD  T+TSL+ 
Sbjct: 242 ARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIH 301

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             C+  NL+ A  +  +     + +     +  +   C++G
Sbjct: 302 ATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y   + +YN ++  L +   L  A   +  M R G+ P+V  YN L+ A C    L  A 
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEG 514
            +   M  +GC+ N  TYN L++ F   GE++GA R+   M E+G A P+  T+ S++ G
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 515 LCQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFLVATKLL-RGLSSD 569
           LC+   ++ A +VF++ V      DV+   ++LS +    C      V +++  RGL  D
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629
           +    S   L+ +   A  +E A+  +  ++E    M +     L        + +  LL
Sbjct: 293 VVTFTS---LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 630 LLHALQEKC 638
            +  ++ KC
Sbjct: 350 AVEEMR-KC 357


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 200/461 (43%), Gaps = 16/461 (3%)

Query: 79  NFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
            F  SP  ++Y+++L +      +    ++L ++K + I      Y  ++ +  +    +
Sbjct: 236 GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIK 295

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG------VEFSTI 190
           +A  V   +     +      N L   L   G +D A ++ DEM   G      V ++T+
Sbjct: 296 QATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTL 355

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
               F W+   +A     L +L+E+R +   +    V   +++   CK  ++EEA   L+
Sbjct: 356 VDACFKWRCSSDA-----LRLLEEMRDK--GVKPTLVTHNIVVKSLCKEGKLEEALGKLE 408

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++      PD I Y  + + +   G+V +   ++ +    G+   T      +  L   +
Sbjct: 409 KIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMK 468

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R  +A+EL        F  D+     ++ +     +P  A+  ++ MIE+  +P++ST +
Sbjct: 469 RYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYN 528

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L K LC+  +  E ++            D  +YN+++   C  G L  A+    +M   
Sbjct: 529 TLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
              PDV   N+LM   C    L  A KL++     G   ++ TYN LI    +VG+++ A
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTA 648

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           L  F +M  KG+ PDA TY  +L  L +    + A  + +K
Sbjct: 649 LHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHK 689



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 193/451 (42%), Gaps = 45/451 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L++  A  G+I  A K+ + M+  G E     + V     C+  K+ +   + DE+ +
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMER 341

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              ++ +      L+   F K +   +A ++L+E+R +  KP  + + IV +     G +
Sbjct: 342 LGTALPDVVTYNTLVDACF-KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKL 400

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E    L+K  + G+AP    Y   I         C+A       V+  FT+ D+     
Sbjct: 401 EEALGKLEKIAEEGLAPDVITYNTLI------DAYCKAGN-----VAKAFTLMDE----- 444

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M+ KG      TL+ +  NLCK  + ++  E+        + 
Sbjct: 445 ------------------MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV 486

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  SY  +++          A  +  +M  + L P +S YN+L++  CR + L+ A   
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            ++    G   +  TYNI+I  + + G++E A R  + M+E    PD  T  +L+ GLC 
Sbjct: 547 LNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG------HFLVATKLLRGLSSDLG 571
              L  A ++F   V     +     +T + S+C+ G      HF    + ++GL  D  
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME-VKGLQPD-- 663

Query: 572 HSDSHVILLKSLADAREVEMAIEHIKWIQES 602
            + ++ ++L +L++A   E A   +  + +S
Sbjct: 664 -AFTYNVVLSALSEAGRSEEAHNMLHKLADS 693



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 179/421 (42%), Gaps = 12/421 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++ + +    I     V++ +       D   Y  +   L Q     +AF + +E+
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEM 339

Query: 146 KFNCEDIG---PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
               E +G   P++   N+L+          +AL++ +EM  +GV+ + +   + +   C
Sbjct: 340 ----ERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLC 395

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +  KL + L  L+++   E  +    +    +I  +CK   V +AF ++DE+  +  K D
Sbjct: 396 KEGKLEEALGKLEKIA--EEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMD 453

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                 V      M    + E +L    + G  P    Y   +     E     A  L +
Sbjct: 454 TFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWD 513

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            ++  K        N LI  +  ++  + AI   N  +EKG VP  +T + +    CK  
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             +     +  +  N +  D+ + N +++ LC  G+L +A  + +    KG   DV  YN
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYN 633

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+++ C+   +  A   +D M   G   +  TYN+++S  SE G  E A  + H + + 
Sbjct: 634 TLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693

Query: 500 G 500
           G
Sbjct: 694 G 694



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 161/365 (44%), Gaps = 4/365 (1%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F + +   C    L   L+ L  ++     +   +V    +++  C+   + EA  +L  
Sbjct: 211 FNLLVHTHCSKGTLADALATLSTMQGF--GLSPDAVTYNTLLNAHCRKGMLGEARALLAR 268

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++     P    Y  +   F  +G + +   V++     G  P    Y    +GL    +
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGK 328

Query: 312 ICEAKELGEVIVSGKFTIDDDV-LNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLS 369
           + EA  L + +      + D V  N L+ +       S A+     M +KG  PTL T +
Sbjct: 329 VDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            + K+LCK  K +E +   + ++      D+ +YN ++   C +G + +A+ ++ EM  K
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL  D    N+++   C+      A++L       G   +  +Y  +++ + +    E A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           LRL+  M+E+ + P  +TY +L++GLC+   L+ A +  N+ V   ++   +  +  + +
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHA 568

Query: 550 LCRRG 554
            C+ G
Sbjct: 569 YCKEG 573



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N++V   C+ G L +A   +  M+  GL PD   YN+L+ A CR+ +L  A+ L  +M
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 269

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G +    TYN L+S F+ +G I+ A ++  +M   G  PD  TY  L  GLCQ   +
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKV 329

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS--DLGHSD---SH 576
             AF + ++       L   +    ++  C +  +  ++  LR L    D G      +H
Sbjct: 330 DEAFRLKDEMERLGTALPDVVTYNTLVDACFK--WRCSSDALRLLEEMRDKGVKPTLVTH 387

Query: 577 VILLKSLADAREVEMAIEHIKWIQE 601
            I++KSL    ++E A+  ++ I E
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAE 412



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 12/259 (4%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL+AL  S S++ P++++  F  +IE    P   T + L    C +    + +     + 
Sbjct: 177 VLSALSRSPSTL-PQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ 235

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +YN +++  C  G L EA  ++  MKR G+ P    YN+L+ A  R   ++
Sbjct: 236 GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIK 295

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSL 511
            A K+ + M A G   +L+TYN+L     + G+++ A RL   M   G A PD  TY +L
Sbjct: 296 QATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTL 355

Query: 512 LEGL----CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           ++      C    L+   E+ +K V   ++    ++     SLC+ G    A   L  ++
Sbjct: 356 VDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK----SLCKEGKLEEALGKLEKIA 411

Query: 568 SDLGHSDSHVILLKSLADA 586
            +    D  VI   +L DA
Sbjct: 412 EEGLAPD--VITYNTLIDA 428



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 162/399 (40%), Gaps = 43/399 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++++ ++KSL    ++      L+++    +  D   Y  +I +  +  N  KAF++ +E
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N++L  L      ++A ++      RG     + +G  +  + +   
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
               L + D++ +R+  +I        +I G C+ +R++EA   L+E   +   PD   Y
Sbjct: 505 PEPALRLWDQMIERK--LIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTY 562

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+   +   G +        K  +    P        + GL +  ++ +A +L E  V 
Sbjct: 563 NIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE 622

Query: 325 GKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVP-------TLSTLSNLSKN-- 374
               +D    N LI S+  + D  +A+ FF+ M  KG  P        LS LS   ++  
Sbjct: 623 KGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEE 682

Query: 375 ---------------------LCKRNKSDEL--------VEVYKVLSANDYFTDMESYNV 405
                                L K + +DE          E      A D    +E+Y  
Sbjct: 683 AHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQD--NALETYME 740

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++ LCT G+L+EA  V+ EM +KG+  D S Y +LME 
Sbjct: 741 RLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEG 779


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 54/460 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L  +   D A  +F EM  +  +     F + +   C + +L +   +L   R 
Sbjct: 11  NKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG--RM 68

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +E   +    I   +I G+ K K   +AFK L E+    C P  + Y  + +        
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNA 336
            +   +L + R  G +P    Y   + GL  ER++ EAK+ L E+ V G F         
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF--------- 179

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                                     P + T ++  K LCK ++ DE     K L+    
Sbjct: 180 --------------------------PDVVTYNSFIKGLCKCDRVDE---ARKFLARMPV 210

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ SY  +++ LC SG L  A  ++  M  +G  PDV  Y+SL++  C+   +  A  
Sbjct: 211 TPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMG 270

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D M   GC  N+  YN L+     +G I  A  +   M  +G  PD  +Y + ++GLC
Sbjct: 271 LLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLC 330

Query: 517 QETNLQAAFEVFNKSV---------NHDVMLARSILSTFMI-SLCRRGHFLVATKLL-RG 565
           +   ++ A  VF++ V         ++ +++   +L T ++  LC+ G F  A  L  + 
Sbjct: 331 KAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKV 390

Query: 566 LSSDLGHSDS--HVILLKSLADAREVEMAIEHIKWIQESS 603
           L   +   D   + ++L S    R+++ A++  K + E +
Sbjct: 391 LDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN 430



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 209/501 (41%), Gaps = 49/501 (9%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           S QP+      ++  +L+ L  S Q+     +L ++K      D ++Y  +I    + K+
Sbjct: 37  SCQPD----AFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKD 92

Query: 135 TQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
             +AF    E VK +C        N +  +  ++   D A+K+ DEM  +G   +   + 
Sbjct: 93  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRD-AVKLLDEMRDKGCSPNIYTYN 151

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRE--------NSMING-------------------- 225
           V +   CE  KL +   ML+E+  R         NS I G                    
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT 211

Query: 226 --SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    +I+G CK   ++ A ++LD +  R C PD + Y  + + F   G V     +
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGL 271

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L    KLG  P    Y   +  L     I +A+++   +    FT D    NA I  +  
Sbjct: 272 LDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 331

Query: 344 IDP-RSAIVFFNFMIEKGRVPTLSTLSNLS----------KNLCKRNKSDELVEVY-KVL 391
            +  + A   F+ M+E+G  P  S+ S L             LCK  + DE   ++ KVL
Sbjct: 332 AERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVL 391

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  YNVM+   C   ++ +A  + ++M  K    +V  +N L+   C +D L
Sbjct: 392 DEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRL 450

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+ +   M   G   +  TY  L+    + G+   AL LF   ++ G  PD  TY++L
Sbjct: 451 SDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSAL 510

Query: 512 LEGLCQETNLQAAFEVFNKSV 532
           + GL  E   + A+ +F K V
Sbjct: 511 ITGLVHENMAEEAYLLFTKLV 531



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%)

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y  ++ +YN ++  L    R  +A  V QEM  K   PD   +  L+   CR + L  A+
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL  +M   GC  +   YN LIS +S+  +   A +    M++    P   TYT++++GL
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 516 CQETNLQAAFEVFNK 530
           C+    + A ++ ++
Sbjct: 123 CKAERTRDAVKLLDE 137



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 88/197 (44%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L   L + ++ D+   V++ +       D  ++ +++  LC S +L +A  ++  M
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K  G  PD + YN+L+    +      A K   +M  + C   + TY  ++    +    
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
             A++L   M +KG +P+  TY  ++EGLC+E  L  A ++  +             ++F
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSF 188

Query: 547 MISLCRRGHFLVATKLL 563
           +  LC+      A K L
Sbjct: 189 IKGLCKCDRVDEARKFL 205



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 127/325 (39%), Gaps = 34/325 (10%)

Query: 54  RVINPYLLTHHSLALGFFNWASQQ---------------PNFTHSPLSYHSILKSLSLSR 98
           R   P ++T+ SL  GF      +               PN     ++Y+S+L +L    
Sbjct: 243 RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNM----VAYNSLLGALHRLG 298

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCED------ 151
            I   + +L +++    T D   Y   I  L + +  +KA +VF+  V+  C        
Sbjct: 299 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 358

Query: 152 ---IGPEICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
              +   +   LL  L   G  D A  +F + +  +  E     + V +   C+  ++ +
Sbjct: 359 MLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 418

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            L +  ++ ++    +   V   +++HG C   R+ +A  +L  +      PDF+ Y  +
Sbjct: 419 ALQIHKQMLEKNCCNV---VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTL 475

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            +     G       + ++  K G  P    Y   I GL+ E    EA  L   +V  ++
Sbjct: 476 VDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRW 535

Query: 328 TIDDDVLNALIGSVSSID-PRSAIV 351
             DD  L  L   +  ++ PR A V
Sbjct: 536 VPDDKTLGLLHRKLKLLNKPRKAEV 560



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G + +V  YN L+    RE     A  ++ +M    C  +  T+ IL+       ++E A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
            +L   M E G  PD   Y +L+ G  +  +   AF+   + V +  +      +  +  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 550 LCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
           LC+      A KLL     +G S ++    ++ ++++ L + R+++ A
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIY---TYNVIVEGLCEERKLDEA 166


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 216/493 (43%), Gaps = 19/493 (3%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++Y++I+  L  ++ ++  + VL+ +    + LD   Y  II  L + +   +A
Sbjct: 194 NCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRA 253

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             V   +    + + P++   N+++  L     +D A  +   M  +GV+   + +   I
Sbjct: 254 EGVLQHMID--KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 311

Query: 197 WKFCENAKL----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              C+   +    G +  M+D+  K +    N       +IHG+      +E  + L+E+
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYN------CLIHGYLSTGEWKEVVRRLEEM 365

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R   PD + Y ++ +     G   E   +     + G+ P    Y   + G      I
Sbjct: 366 YARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAI 425

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLS 369
            +  +L +++V+   + ++ + N ++ + +    ID   A+  F+ M + G  P + T  
Sbjct: 426 ADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMID--EAMHIFSRMSQHGLSPDVVTYG 483

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L   LCK  + D+ V  +  +  +    +   +N +V  LCT  R  +A  +  EM  +
Sbjct: 484 ILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ 543

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ P+V F+N++M   C E  +  A++L D M   G   N+ +YN LI      G  + A
Sbjct: 544 GVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEA 603

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
            +L   M+  G+ PD  +Y +LL G C+   +  A+ +F + +   V       ST +  
Sbjct: 604 AQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQG 663

Query: 550 LCRRGHFLVATKL 562
           L     F  A +L
Sbjct: 664 LFHTRRFSEAKEL 676



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 224/518 (43%), Gaps = 35/518 (6%)

Query: 66  LALGFFN-WASQQPNFTHSPLSYHSILKSL-----SLSRQINAIDSVLKQ-VKVNKITLD 118
           LA+  FN  A    N     L  +SIL         +     A   +LK   +VN++ ++
Sbjct: 70  LAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVIN 129

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVF--NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNAL 174
                 ++  L   K   +A  +      +F C    P +  CN+LL  L ++  ++ AL
Sbjct: 130 Q-----LLNGLCDAKRVDEAMDILLRRMPEFGCM---PNVVSCNTLLKGLCNEKRVEEAL 181

Query: 175 KMFDEMSHRG--------VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           ++   M+  G        V ++TI  G+   +  + A+ G +  M+D+  K +       
Sbjct: 182 ELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAE-GVLQHMIDKGVKLD------V 234

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V    II G CK + V+ A  VL  +  +  KPD + Y  + +      +V   E VL+ 
Sbjct: 235 VTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQH 294

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
               GV P    Y   I GL   + +  A  + + ++      D    N LI G +S+ +
Sbjct: 295 MIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGE 354

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            +  +     M  +G  P + T S L   LCK  K  E  +++  +       ++  Y +
Sbjct: 355 WKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGI 414

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++      G + +   ++  M   G+ P+   +N ++ A  ++ ++  A  ++ +M   G
Sbjct: 415 LLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHG 474

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            S ++ TY ILI    ++G ++ A+  F+ M+  GV P++  + SL+ GLC     + A 
Sbjct: 475 LSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAE 534

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           E+F +  +  V       +T M +LC  G  +VA +L+
Sbjct: 535 ELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLI 572



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/598 (19%), Positives = 251/598 (41%), Gaps = 61/598 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++I+  L  ++ ++  + VL+ +    +  D   Y  II  L + +   +A  V   
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329

Query: 145 VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    +D+ P+I   N L+    S G     ++  +EM  RG++   + + + +   C+N
Sbjct: 330 MID--KDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387

Query: 203 AKLGQVLSMLDEVRKRENSMINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            K         E RK    MI   +     I  +++HG+     + +   +LD +     
Sbjct: 388 GKC-------TEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGI 440

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+   + IV   +     + E   +  +  + G++P    Y   I  L    R+ +A  
Sbjct: 441 SPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVL 500

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDP----------------RSAIVFFNFMI---- 357
               +++   T +  V N+L+  + ++D                 R  +VFFN ++    
Sbjct: 501 KFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC 560

Query: 358 EKGRV----------------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +G+V                P + + + L    C   ++DE  ++  V+ +     D+ 
Sbjct: 561 NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLI 620

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SY+ ++   C +GR+  AY + +EM RKG+ P    Y+++++          AK+L+  M
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             SG   ++ TYNI+++   +   ++ A ++F ++  K + P+  T+T +++ L +    
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--L 579
           + A ++F    +H ++         M ++ + G       L   +       DS ++  +
Sbjct: 741 KDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAI 800

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY-------PEPILLL 630
           ++SL    E+  A  ++  I E + ++    ++ L +  S   Y       PE  L L
Sbjct: 801 IRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLPEKYLFL 858



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 171/415 (41%), Gaps = 33/415 (7%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV----LSMLDEVRKRENSMING 225
           ID+ALK+FDE+       S   F   +      A+        +S+ + + +  ++ +  
Sbjct: 30  IDDALKLFDELLPHARPASVRAFN-HLLNVVARARCSSTSELAVSLFNRMARACSNKVRP 88

Query: 226 SVIAVLIIHG-FCKGKRVEEAFKV----------LDELRIRECKPDFIAYRIVAEEFKLM 274
            +    I+ G FC+  R+E  F            ++E+ I +        + V E     
Sbjct: 89  DLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAM--- 145

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV---SGKFTIDD 331
                 +++L++  + G  P        + GL  E+R+ EA EL   +     G  T + 
Sbjct: 146 ------DILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNV 199

Query: 332 DVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
              N +I  +    ++D    +     MI+KG    + T S +   LCK    D    V 
Sbjct: 200 VTYNTIIDGLCKAQAVDRAEGV--LQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + +       D+ +YN ++  LC +  +  A GV+Q M  KG+ PDV  YN++++  C+ 
Sbjct: 258 QHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 317

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A  +   M       +++TYN LI  +   GE +  +R    M  +G+ PD  TY
Sbjct: 318 QAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTY 377

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + LL+ LC+      A ++F   +   +    +I    +     RG     T LL
Sbjct: 378 SLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLL 432


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 200/449 (44%), Gaps = 40/449 (8%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
           D   ++ K    +L++ +Y  II +  Q  N  KA ++  E++    D   +I ++++  
Sbjct: 3   DHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDG 62

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
               G  D  L +F+     G+  S I +G  I  +   AKLG+V   L+  ++ E++ I
Sbjct: 63  YTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLY---AKLGKVSKALEVSKEMEHAGI 119

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV----- 277
             ++    ++I+GF K K    AF + ++L     KPD + Y  +   F  MG +     
Sbjct: 120 KHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVC 179

Query: 278 -----------------------FEREVVLKKK-------RKLGVAPRTNDYREFILGLI 307
                                  F R+  +KK        R  G  P  + Y   ILGL+
Sbjct: 180 TVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLV 239

Query: 308 VERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            +R++ +A++ L E+ ++G    +      + G  S  D   A  +F  + ++G    + 
Sbjct: 240 EKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVY 299

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T   L K  CK  +    + V K +SA +   +   YN+++      G + EA  ++Q+M
Sbjct: 300 TYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQM 359

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           KR+G+ PD+  Y S + AC +   ++ A K  ++M + G   N+KTY  LI+ ++     
Sbjct: 360 KREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 419

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           E AL  F  M   G+ PD   Y  L+  L
Sbjct: 420 EKALSCFEEMKLSGLKPDRAVYHCLMTSL 448



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 177/415 (42%), Gaps = 4/415 (0%)

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K ++S +N ++I   II+ +C+   +++A  ++ E+           Y  + + + ++G 
Sbjct: 10  KEKHSSLN-AIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGD 68

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +  +V ++ ++ G+ P    Y   I       ++ +A E+ + +       +    + 
Sbjct: 69  EDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSM 128

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G +   D  +A   F  +I+ G  P +   +N+    C   K D  V   K +    
Sbjct: 129 LINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQR 188

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +     ++  ++      G +++A  V   M+  G  P V  YN+L+     +  +  A+
Sbjct: 189 HKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAE 248

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           ++ D+M  +G S N  TY  ++  ++ +G+   A   F  + ++G+  D  TY +LL+  
Sbjct: 249 QILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKAC 308

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C+   +Q+A  V  +    ++     I +  +    RRG    A  L++ +  +    D 
Sbjct: 309 CKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDI 368

Query: 576 HVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628
           H     + + + A +++ A + I+ ++        +    L    + +S PE  L
Sbjct: 369 HTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKAL 423


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/544 (22%), Positives = 236/544 (43%), Gaps = 32/544 (5%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSL-----SLSRQINAIDSVLKQVKVNKITLDSSV 121
           AL   + A++   F  + LSY+++L +L     S  R  +  + V + +  N ++ +   
Sbjct: 151 ALTLLHLANRH-GFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYT 209

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  II  ++   + +K        K   E I P +   N+L+        +  A+ +   
Sbjct: 210 YNVIIRGVVSQGDLEKGLGFMR--KMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRA 267

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M+  GV  + I +   I   C   ++ +V  +++E+R +   ++   V    +++GFCK 
Sbjct: 268 MAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGK--GLVPDEVTYNTLVNGFCKE 325

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             + +   +L E+  +   P+ + Y  +       G++     +  + R  G+ P    Y
Sbjct: 326 GNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTY 385

Query: 300 REFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
              I G   +  + EA K L E+IVSG F+      NAL+     +   + A+     M+
Sbjct: 386 TTLIDGFCQKGLMNEAYKVLSEMIVSG-FSPSVVTYNALVHGYCFLGRVQEAVGILRGMV 444

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E+G  P + + S +    C+  +  +  ++ + +       D  +Y+ ++  LC   +L 
Sbjct: 445 ERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV 504

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA+ + +EM R+GL PD   Y SL+ A C +  L  A +L D+M   G   +  TY++LI
Sbjct: 505 EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLI 564

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE---------------GLCQETNLQ 522
           +  ++    + A RL   +  +   PD  TY +L+E               G C +  + 
Sbjct: 565 NGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMN 624

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILL 580
            A  VF   +  +     +I +  +    R G+   A  L   L  SS   H+ + + L+
Sbjct: 625 EADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALV 684

Query: 581 KSLA 584
           K+LA
Sbjct: 685 KALA 688



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 6/309 (1%)

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV-----ERRICEAKEL 318
           + +V +    +G V +   +L    + G AP    Y   +  L+       R   +A+ +
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERV 194

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
              +V    + +    N +I G VS  D    + F   M ++G  P + T + L    CK
Sbjct: 195 FRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + K  E + + + ++      ++ SYN +++ LC  GR+ E   +++EM+ KGL PD   
Sbjct: 255 KKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVT 314

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN+L+   C+E  L     L  +M   G S N+ TY  LI+   + G +  A+ +F  M 
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR 374

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            +G+ P+  TYT+L++G CQ+  +  A++V ++ +      +    +  +   C  G   
Sbjct: 375 VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQ 434

Query: 558 VATKLLRGL 566
            A  +LRG+
Sbjct: 435 EAVGILRGM 443



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/486 (19%), Positives = 203/486 (41%), Gaps = 71/486 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY+S++  L    +++ +  ++++++   +  D   Y  ++    +  N  +   + +E
Sbjct: 278 ISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSE 337

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P +    +L+  +   G +  A+++FD+M  RG+  +   +   I  FC+ 
Sbjct: 338 MV--GKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQK 395

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECK 258
             + +   +L E+      +++G   +V+    ++HG+C   RV+EA  +L  +  R   
Sbjct: 396 GLMNEAYKVLSEM------IVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 259 PDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
           PD ++Y  V   F   + +G  F+ +  + +K   GV P T  Y   I GL +++++ EA
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEK---GVLPDTVTYSSLIQGLCLQQKLVEA 506

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L   ++      D+    +LI +       S A+   + M+++G +P   T S L   
Sbjct: 507 FDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLING 566

Query: 375 LCKRNKS------------DELVE---VYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           L K+ ++            +E V     Y  L  N    + +S   +V   C  G + EA
Sbjct: 567 LNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEA 626

Query: 420 YGVIQEMKRKGLDPDVSFYN-----------------------------------SLMEA 444
             V + M ++   P+ + YN                                   +L++A
Sbjct: 627 DRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKA 686

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             RE +     +L   +  S    + K   +L+    + G ++  L +   M + G+ PD
Sbjct: 687 LAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746

Query: 505 ATTYTS 510
              ++S
Sbjct: 747 GGIHSS 752


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/511 (22%), Positives = 217/511 (42%), Gaps = 23/511 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I++SL     I    +VL ++ +        +   I+ +  +G   + A      +
Sbjct: 110 TYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVL 169

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                 +    CN +++ +   G +D  +++  ++   G E   + +   +   C   + 
Sbjct: 170 HAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRW 229

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
             V  ++ E+  R     N +    LI +  C+    E+  + L ++    C PD   Y 
Sbjct: 230 DDVEELMVEM-VRVGCPPNVATFNTLIAY-LCRNGLFEQVHEALSQMPEHGCTPDLRMYA 287

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +     G       +L +    G+ P    Y   + GL    R  EA++L   +   
Sbjct: 288 TIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQE 347

Query: 326 KFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
              +DD   N L+      G V  +     I     M+E G +P + T + +    CK  
Sbjct: 348 DCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLEHGCIPDVITYTTVINGFCKEG 402

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE V + K +SA     +  SY +++  LC + R  +A  +I  M ++G  P+   +N
Sbjct: 403 LVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFN 462

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+   C++ L+  A +L  QM  +GCS +L +Y+ +I    + G+ E AL L + M+ K
Sbjct: 463 TLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINK 522

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGH 555
           G+ P+   Y+S+   L +E       ++F+     +V  D  L  +++S    SLC+R  
Sbjct: 523 GITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVIS----SLCKRWE 578

Query: 556 FLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
              A      + S+  + +  ++ IL++ LA
Sbjct: 579 TDRAIDFFAYMVSNGCMPNESTYTILIRGLA 609



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/455 (20%), Positives = 199/455 (43%), Gaps = 38/455 (8%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           P+F   P  +SY+++LK L ++++ + ++ ++ ++       + + +  +I  L +    
Sbjct: 205 PSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLF 264

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++     +++  +       +  +++  +  DG+ + A  +   M   G++ + + +   
Sbjct: 265 EQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTV 324

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +   C   +  +   +L E+ + +  + +  V   +++  FC+   V+   ++L+++   
Sbjct: 325 LKGLCSAERWEEAEDLLAEMFQEDCPLDD--VTFNILVDFFCQNGLVDRVIELLEQMLEH 382

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C PD I Y  V   F   G V E  ++LK     G  P T  Y   + GL    R  +A
Sbjct: 383 GCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDA 442

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           +EL                                   + MI++G +P   T + L   +
Sbjct: 443 QEL----------------------------------ISHMIQQGCLPNPVTFNTLINFM 468

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK+   ++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  M  KG+ P+ 
Sbjct: 469 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNT 528

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y+S+  A  RE       +++D +  +    +   YN +IS   +  E + A+  F  
Sbjct: 529 IIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAY 588

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           M+  G  P+ +TYT L+ GL  E  ++ A ++ ++
Sbjct: 589 MVSNGCMPNESTYTILIRGLASEGLVREAQDLLSE 623



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 41/224 (18%)

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           LS L ++LC   ++    +  + L        + +YN M++  C +G++  A  +   + 
Sbjct: 47  LSALIRSLCAAGRT---ADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP 103

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS----------------GNLK 471
              + P+   Y  ++ + C   L+  A  + D+M   GC+                G  +
Sbjct: 104 ---VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160

Query: 472 TY-------------------NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           +                    N+++S   E G ++  + L   +   G  PD  +Y ++L
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +GLC         E+  + V        +  +T +  LCR G F
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLF 264


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 207/477 (43%), Gaps = 22/477 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++++L +L     I    ++L +V    ++++       I  L +G   ++A ++   +
Sbjct: 117 TFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM 176

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
                 I P++   N+L+  L  D  +  A +    M ++G       +   I  +C+  
Sbjct: 177 D---AYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRD 233

Query: 204 KLGQVLSML-DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            L +   +L D + K     +   V    +I+G C    VE A ++ +E + ++ KPD +
Sbjct: 234 MLQEATELLKDAIFK---GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLV 290

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEV 321
            Y  + +     G +     V+ +  + G  P    Y   I GL     I +A   + + 
Sbjct: 291 VYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDA 350

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           IV G +  D    N +I G    +   SA+     M   G  P   T +++   LCK  K
Sbjct: 351 IVKG-YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGK 409

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
           + E+ E ++ +       +  +YN+++   C   +L EA GVI  M + GL PD   +N+
Sbjct: 410 AKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNT 469

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   CR   L  A  L+ ++   G S    T+NILI  +S    ++ A ++F  M+ KG
Sbjct: 470 LIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKG 529

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             PD  TY  L++G C+  N+  A+          V LA  +   F+ S+   G  L
Sbjct: 530 YKPDLYTYRVLVDGSCKAANVDRAY----------VHLAEMVSKGFVPSMATFGRVL 576



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 198/448 (44%), Gaps = 11/448 (2%)

Query: 88  HSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H++ +KS  ++ + +    +L+ +      +    Y  ++  L    +   A  +F+E+ 
Sbjct: 48  HTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEML 107

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               D+ P++   N++L  L   G I  +  +  ++  RG+  +     ++I   CE  +
Sbjct: 108 R--RDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGR 165

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           L + +++++ +    ++ I   V+    ++ G CK  +V+EA + L  +  + C PD   
Sbjct: 166 LEEAVALVESM----DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFT 221

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +     + E   +LK     G  P    Y   I GL  E  +  A EL     
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQ 281

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +     D  V N+L+ G         A+   N M+E G  P + T + +   LCK     
Sbjct: 282 AKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNIS 341

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   V        Y  D+ ++N M+   C   +L  A  +++ M   G+ PD   YNS++
Sbjct: 342 DAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVL 401

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+    +   + +++M   GC  N  TYNILI  F ++ ++E A  +   M + G+ 
Sbjct: 402 NGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLV 461

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNK 530
           PD  ++ +L+ G C+  +L  A+ +F K
Sbjct: 462 PDTISFNTLIHGFCRNGDLDGAYLLFQK 489



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 182/414 (43%), Gaps = 15/414 (3%)

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F C    P   N+++  L +  Y D A K++  M   GV        V I  FC   +  
Sbjct: 4   FGCPPAAPAY-NAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPH 62

Query: 207 QVLSMLDEVRKRE---NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
             L +L  + +R      +   +V+  L  HG        +A  + DE+  R+  PD   
Sbjct: 63  VALRLLRSLPERGCDVKPLAYCTVVRGLYAHG-----HGYDARHLFDEMLRRDVFPDVAT 117

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  V       G + E   +L K  K G++        +I GL    R+ EA  L E   
Sbjct: 118 FNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVE--- 174

Query: 324 SGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           S    I  DV+  N L+ G       + A  +   M+ +G +P   T + +    CKR+ 
Sbjct: 175 SMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDM 234

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  E+ K      +  D  +Y  +++ LC  G +  A  +  E + K L PD+  YNS
Sbjct: 235 LQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNS 294

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++  CR+ L+  A ++ ++M   GC  ++ TYNI+I+   ++G I  A  + ++ + KG
Sbjct: 295 LVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKG 354

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             PD  T+ ++++G C+   L +A ++  +   + +       ++ +  LC+ G
Sbjct: 355 YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVYKVLSANDYFTDMESYNVMV 407
            F+ M+ +   P ++T +N+   LC++    E    L +V K   + + FT     N+ +
Sbjct: 102 LFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFT----CNIWI 157

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  GRL EA  +++ M    + PDV  YN+LM   C++  ++ A +   +M   GC 
Sbjct: 158 RGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCI 216

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  TYN +I  + +   ++ A  L  + + KG  PD  TY SL+ GLC E +++ A E+
Sbjct: 217 PDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALEL 276

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           FN++   D+     + ++ +  LCR+G  L A +++  +  D  H D
Sbjct: 277 FNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD 323



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 152/361 (42%), Gaps = 9/361 (2%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F    ++Y S++  L     +     +  + +   +  D  VY  ++  L +      A
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 308

Query: 139 FSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             V NE V+  C    P+I   N ++  L   G I +A  + ++   +G       F   
Sbjct: 309 LQVMNEMVEDGCH---PDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTM 365

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I  +C+  KL   L +++  R     +   ++    +++G CK  + +E  +  +E+ ++
Sbjct: 366 IDGYCKRLKLDSALQLVE--RMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILK 423

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
            C+P+ I Y I+ E F  +  + E   V+ +  + G+ P T  +   I G      +  A
Sbjct: 424 GCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGA 483

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L + +    ++   D  N LIG+ SS ++ + A   F  MI KG  P L T   L   
Sbjct: 484 YLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDG 543

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            CK    D        + +  +   M ++  +++ L  + R+ EA  +I  M R G+ P+
Sbjct: 544 SCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603

Query: 435 V 435
           V
Sbjct: 604 V 604



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  P    YN++M+A         A K++ +M ++G + + +T+ + I  F   G    A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           LRL  ++ E+G       Y +++ GL    +   A  +F++ +  DV    +  +  + +
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 550 LCRRGHF-----LVATKLLRGLS 567
           LC++G       L+A  L RG+S
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMS 147



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 84/197 (42%), Gaps = 1/197 (0%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  L  +    +A+ V   M   G+ PD   +   +++ C       A +L   +
Sbjct: 12  AYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSL 71

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC      Y  ++      G    A  LF  ML + V PD  T+ ++L  LCQ+ ++
Sbjct: 72  PERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDI 131

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS-DSHVILL 580
             +  +  K +   + + +   + ++  LC  G    A  L+  + + +     ++  L+
Sbjct: 132 MESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLM 191

Query: 581 KSLADAREVEMAIEHIK 597
           + L    +V+ A ++++
Sbjct: 192 RGLCKDSKVQEAAQYLR 208


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 196/470 (41%), Gaps = 52/470 (11%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMS 181
           ++  L +  N   AF + N+VK F    + P   + N+L+  +  DG +D A  +F+ M 
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFG---VAPSLFVYNALINSMCKDGKLDEAESLFNNMG 382

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGK 240
           H+G+  + + + + I  FC+  KL   L  L    K     I  +V     +I G CK  
Sbjct: 383 HKGLFPNDVTYSILIDSFCKRGKLDVALHFLG---KMTEVGIKATVYPYSSLISGHCKLG 439

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++  A  + DE+     KP+ + Y  +   +   G +     +  +    G++P T  + 
Sbjct: 440 KLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFT 499

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I GL    R+ EA +L   +V      ++   N LI G     +   A    + M+EK
Sbjct: 500 ALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G VP   T   L   LC   +  E  E    L       +   ++ ++   C  GRL +A
Sbjct: 560 GLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDA 619

Query: 420 -----------------------YGVIQEMKRK------------GLDPDVSFYNSLMEA 444
                                  YG++++  R+            GL PD   Y ++++A
Sbjct: 620 LDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDA 679

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             +   L+ A  LWD M + GC  N+ TY  LI+   ++G ++ A  L   ML     P+
Sbjct: 680 NAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPN 739

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             TY   L+ L  E N++ A ++      HDV+L   + +T   ++  RG
Sbjct: 740 QNTYACFLDYLTSEGNIEKAIQL------HDVLLEGFLANTVTYNILIRG 783



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 152/624 (24%), Positives = 264/624 (42%), Gaps = 82/624 (13%)

Query: 7   TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           T  A+  SQ +   ++  R  + W   L  +     +  +L P  V +V+    L    L
Sbjct: 21  TFCASPDSQFVACLTDIVRGNQSWRVALNNSF----ISQTLKPHHVEKVL-IQTLDDSRL 75

Query: 67  ALGFFNWASQQPNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV- 121
           AL FFN+     NF HS  S+    H++++S +L    +++   L    +N   L  S  
Sbjct: 76  ALRFFNFLGLHKNFDHSTTSFCILIHALVQS-NLYWPASSLLQTLLLRGLNPEGLFESFL 134

Query: 122 --YR-----------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
             YR            +I + +Q +       V   +  +C  I P+I  +L  VL  +G
Sbjct: 135 DSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVV-RLMMDC-GILPQI-RTLSGVL--NG 189

Query: 169 YID-----NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
            I       AL +FDE+   G+      +   +   CE   L   +   + + + E+S  
Sbjct: 190 LIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCE---LKDFIRAREVIGRMESSGC 246

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           + SV    + I G CK +RV EA ++           + ++Y+                 
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEI----------KNLLSYK----------------- 279

Query: 283 VLKKKRKLGVAPRTNDYREFILGLI-VERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
                   G+      Y   +LGL  VE      + + E+I  G    +  V N + G  
Sbjct: 280 --------GLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLR 331

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              +  SA    N + + G  P+L   + L  ++CK  K DE   ++  +     F +  
Sbjct: 332 KKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV 391

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y++++   C  G+L  A   + +M   G+   V  Y+SL+   C+   LR AK L+D+M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A+G   N+  Y  LIS + + GE+  A RL+H M  KG++P+  T+T+L+ GLC    +
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSH 576
             A ++F + V  +V+      +  +   C+ G+ + A +LL     +GL  D   + ++
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD---TYTY 568

Query: 577 VILLKSLADAREVEMAIEHIKWIQ 600
             L+  L     V  A E +  +Q
Sbjct: 569 RPLISGLCSTGRVSEAREFMNDLQ 592



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 200/483 (41%), Gaps = 84/483 (17%)

Query: 111 KVNKITLDSSVYRFIIPSLIQGK----NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           K+ ++ + ++VY +   SLI G       + A S+F+E+  N       I  SL++    
Sbjct: 415 KMTEVGIKATVYPY--SSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           +G + NA +++ EM+ +G+  +T  F   I   C   ++ +   +  E+   E ++I   
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMV--EWNVIPNE 530

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   ++I G CK      AF++LDE+  +   PD   YR +       G V E    +  
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMND 590

Query: 287 KRKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
            +  G   + N+  +   + G   E R+ +A +    ++     +D    + LI G +  
Sbjct: 591 LQ--GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 344 IDPRS-----------------------------------AIVFFNFMIEKGRVPTLSTL 368
            D RS                                   A   ++ M+ +G +P + T 
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTY 708

Query: 369 SNLSKNLCKRNKSD--ELVEVYKVLSAN------------DYFT---------------- 398
           + L   LCK    D  EL+   ++L++N            DY T                
Sbjct: 709 TALINGLCKIGLMDKAELL-CREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL 767

Query: 399 -----DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +  +YN+++   C  GR++EA  V+  M   G+ PD   Y++++   CR   L+ 
Sbjct: 768 EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 827

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A KLW+ M   G + +   YN LI      GE+  A  L  +M+ +GV P+  TY SL+ 
Sbjct: 828 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIH 887

Query: 514 GLC 516
           G C
Sbjct: 888 GTC 890



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/548 (19%), Positives = 220/548 (40%), Gaps = 44/548 (8%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y ++++SL   +       V+ +++ +   L  + Y   I  L + +   +A  + N + 
Sbjct: 218 YTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLS 277

Query: 147 FNC--EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     D+G   C  +L +   + + +   +M +EM   G   S       +    +   
Sbjct: 278 YKGLRADVGT-YCTLVLGLCKVEEF-EAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN 335

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G    ++++V+K    +     +   +I+  CK  +++EA  + + +  +   P+ + Y
Sbjct: 336 IGSAFDLVNKVKKF--GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTY 393

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+ + F   G +      L K  ++G+      Y   I G     ++  AK L + +++
Sbjct: 394 SILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIA 453

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +  +  +LI G     +  +A   ++ M  KG  P   T + L   LC  N+  E
Sbjct: 454 NGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAE 513

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM- 442
             +++  +   +   +  +YNV++   C  G    A+ ++ EM  KGL PD   Y  L+ 
Sbjct: 514 ANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLIS 573

Query: 443 --------------------------EAC--------CREDLLRPAKKLWDQMFASGCSG 468
                                     E C        C+E  L  A     +M   G + 
Sbjct: 574 GLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAM 633

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +L  Y++LI       +    + L   M ++G+ PD   YT++++   +  NL+ AF ++
Sbjct: 634 DLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLW 693

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADA 586
           +  V+   +      +  +  LC+ G    A  L R +  S+ L + +++   L  L   
Sbjct: 694 DIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSE 753

Query: 587 REVEMAIE 594
             +E AI+
Sbjct: 754 GNIEKAIQ 761



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+      G I  A ++   M   G+    I +   I+++C    L + + + + +  
Sbjct: 778 NILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLN 837

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    +N   +A   +I+G C    + +AF++ D++  R  KP+   Y  +     LM S
Sbjct: 838 RG---VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSS 894

Query: 277 V 277
           V
Sbjct: 895 V 895


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/559 (23%), Positives = 234/559 (41%), Gaps = 51/559 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  ++   +    ++ + FF WA ++ NF H   +Y 
Sbjct: 75  KWGPDAEKALEVLKLK--VDHRLVRSILE--IDVEINVKIQFFKWAGKRRNFQHDCSTYM 130

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L  +R    +   +++V  N  +++  +V   ++ +L + K   KA SVF + K 
Sbjct: 131 TLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                     NS++ +L  +G  +   +++ EM + G  F  TI +   I  + +  +  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRND 250

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + + DE++  +N M     I   ++  + K  +VE+A  + +E++   C P    Y  
Sbjct: 251 SAIRLFDEMK--DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTE 308

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRT---NDYREFILGLI--VERRICEAKELGEV 321
           + +     G V E     K   + G+ P     N+    ILG +  VE       E+G  
Sbjct: 309 LIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN-ILGKVGRVEELTNVFSEMGMW 367

Query: 322 IVSGKFTIDDDVLNALIGS---------------VSSIDP------------------RS 348
             +      + V+ AL  S                 S+ P                    
Sbjct: 368 RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A++    M EKG  P  +   +L   L K  + +   E++K L  N        Y VM+ 
Sbjct: 428 ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK 487

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                G+L EA  +  EMK +G  PDV  YN+LM    +  ++  A  L  +M  +GC  
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF--- 525
           ++ ++NI+++ F+  G    A+ +F  +   G+ PD  TY +LL         + A    
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607

Query: 526 -EVFNKSVNHDVMLARSIL 543
            E+ +K   +D +   SIL
Sbjct: 608 REMKDKGFEYDAITYSSIL 626


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 203/462 (43%), Gaps = 17/462 (3%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +G+ I  F     L   + +L+E++   N     +V+   ++ G C   RV EA +    
Sbjct: 12  YGILIRGFSSAGDLDIAIQLLEEMKS--NGFEGNAVVHTTLMKGLCDAGRVVEALEHFRA 69

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  ++C PD + Y  +       G   E + +L++    G AP T  +   I GL     
Sbjct: 70  M-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGS 128

Query: 312 ICEA-KELGEVIVSGKFTID---DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
             +A + L +VI  G    D   + ++  L    +S++  S ++    +I KG  PT+  
Sbjct: 129 EEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVL--GVVIAKGFTPTVLM 186

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + +    CK    D   ++ +V+       ++ ++ ++++ LC + R+ EA  ++++M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G  P+V  Y++++   C++  +  A +L+  M    C  N+ T+NILI    +   IE
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI-LSTF 546
            A +L+H M E G APD  TY SL++GLC+   +  AF++F       V  A ++  ST 
Sbjct: 307 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 366

Query: 547 MISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
                  G    A ++      +G S DL    S  ++L+    +R VE+     +   +
Sbjct: 367 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTS--LILEYCKTSRAVEVVELVEEMASK 424

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
             P  +  +SA L      +     I L        C D  +
Sbjct: 425 GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDAL 466



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 220/524 (41%), Gaps = 44/524 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y  +++  S +  ++    +L+++K N    ++ V+  ++  L       +A   F  
Sbjct: 10  FTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRA 69

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +C    P++    +L+  L   G  D A  M  EM  RG    T+ F   I   C+ 
Sbjct: 70  MAKDC---APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126

Query: 203 AKLGQVLSMLDEVRKRE------------------------NSMINGSVIAV-------- 230
               Q   +L++V +R                          S + G VIA         
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186

Query: 231 --LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             L+I+GFCK K ++ A+K+L+ +  + C P+   + I+         V E + +L+K  
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
             G +P    Y   I GL  + ++ +A EL +++       +    N LI G   +    
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVM 406
            A   ++ M E G  P + T ++L   LCK  + DE  ++++ +  +     +  +Y+ +
Sbjct: 307 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 366

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
                  GR+ +A  +   +  KG  PD++ Y SL+   C+        +L ++M + G 
Sbjct: 367 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 426

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + T + ++    E    E A++LF +M  +G   DA  Y  ++EG+ + +    A  
Sbjct: 427 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALA 486

Query: 527 VFNKSV---NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           V  + +   +     + S +   + SLC+ G    A +LL  +S
Sbjct: 487 VLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMS 530



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/564 (18%), Positives = 232/564 (41%), Gaps = 88/564 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++ +L  + + +    +L+++       D+  +  +I  L +  + ++AF V  +
Sbjct: 79  MTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLED 138

Query: 145 V--------KFNCEDIGPEICNS---------LLAVLASDGY------------------ 169
           V            E I   +CN          +L V+ + G+                  
Sbjct: 139 VIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAK 198

Query: 170 -IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS-- 226
            +D+A K+ + M  +G   +   F + I   C+  ++G+   +L++       M+ G   
Sbjct: 199 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK-------MVTGGCS 251

Query: 227 ---VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    +I+G CK  +V++A+++   +  R C P+ + + I+ +       + E   +
Sbjct: 252 PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQL 311

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI--GSV 341
             + R+ G AP    Y   I GL    ++ EA +L + I     +  + V  + +  G  
Sbjct: 312 YHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYA 371

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR----------------------- 378
           +      A   F+ +++KG  P L+T ++L    CK                        
Sbjct: 372 ALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVN 431

Query: 379 ------------NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
                       N ++  ++++  ++A     D   YN++V  +  + +  +A  V++++
Sbjct: 432 TLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQV 491

Query: 427 ---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              + +  +P  S  ++L+E+ C+      AK+L  +M   G +  + +YN L+S  S +
Sbjct: 492 IDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRL 551

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
              + A ++F  M+  G AP+ +T   ++  LC    +  A+E+  +             
Sbjct: 552 QRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETC 611

Query: 544 STFMISLCRRGHFLVATKLLRGLS 567
           +T +   C+ G   +A KLL  ++
Sbjct: 612 NTLIGGYCKSGRADLARKLLEEMT 635



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/436 (20%), Positives = 183/436 (41%), Gaps = 12/436 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++  ++  L  + ++     +L+++     + +   Y  +I  L +      A+ +F  
Sbjct: 220 FTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQL 279

Query: 145 V-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + + NC    P +   N L+  L     I+ A +++  M   G     I +   I   C+
Sbjct: 280 MERRNCP---PNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 336

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + ++ +   +   + +   S  N    + L  HG+    R+ +A ++   L  +   PD 
Sbjct: 337 SFQVDEAFQLFQTIPESGVSAANAVTYSTLF-HGYAALGRMADACRIFSMLVDKGFSPDL 395

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +  E+       E   ++++    G  PR N     + GL        A +L + 
Sbjct: 396 ATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDS 455

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCK 377
           + +   T D  + N ++ G   +     A+     +I+K      P+ S +  L ++LC+
Sbjct: 456 MAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 515

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             ++D+  ++   +S   +   + SYN ++S L    R  EA  V + M   G  P++S 
Sbjct: 516 VGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST 575

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
            N ++   C    +  A +L  +M   GC  +++T N LI  + + G  + A +L   M 
Sbjct: 576 VNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT 635

Query: 498 EKGVAPDATTYTSLLE 513
           E G+ P+ TT+  LLE
Sbjct: 636 EAGLEPNDTTH-DLLE 650



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P   T   L +        D  +++ + + +N +  +   +  ++  LC +GR+ EA  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
             + M  K   PDV  Y +L+ A C+      A+ +  +M A GC+ +  T++ LI    
Sbjct: 66  HFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           + G  E A R+  +++++G+      + ++++ LC + N
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 163



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C  N  TY ILI  FS  G+++ A++L   M   G   +A  +T+L++GLC    +  A 
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 526 EVFN---KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           E F    K    DVM   +++     +LC+ G F  A  +LR
Sbjct: 65  EHFRAMAKDCAPDVMTYTALVH----ALCKAGKFDEAQGMLR 102


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/561 (23%), Positives = 241/561 (42%), Gaps = 55/561 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  ++   +    ++ + FF WA ++ NF H   +Y 
Sbjct: 75  KWGPDAEKALEVLKLK--VDHRLVRSILE--IDVEINVKIQFFKWAGKRRNFQHDCSTYM 130

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L  +R    +   +++V  N  +++   V   ++ +L + K   KA SVF + K 
Sbjct: 131 ALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                     NS++ +L  +G  +   +++ EM + G  F  TI +   I  + +  +  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRND 250

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + + DE++  +N M     I   ++  + K  +VE+A  + +E++   C P    Y  
Sbjct: 251 SAIRLFDEMK--DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTE 308

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRT---NDYREFILGLI--VERRICEAKELGEV 321
           + +     G V E   + K     G+ P     N+    ILG +  +E       E+G  
Sbjct: 309 LIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMN-ILGKVGRLEELTNVFNEMGTW 367

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
             +      + V+ AL  S + +   S+  +F+ M   G  P+  T S L    CK N+ 
Sbjct: 368 RCTPTVVSYNTVIKALFESKAPVSEVSS--WFDKMKADGVSPSEFTYSILIDGYCKTNRV 425

Query: 382 DE--------------------------LVEVYKVLSANDYFTDMES---------YNVM 406
           ++                          L +  +  +AN+ F +++          Y VM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L EA  +  EMK +G  PDV  YN+LM    +  ++  A  L  +M  +GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGC 545

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF- 525
           + ++ ++NI+++ F+  G    A+ +F  M   G+ PD  TY +LL         + A  
Sbjct: 546 TADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAAR 605

Query: 526 ---EVFNKSVNHDVMLARSIL 543
              E+ +K   +D +   SIL
Sbjct: 606 LMREMKDKGFEYDAITYSSIL 626


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 175/409 (42%), Gaps = 37/409 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L++  A  G+I  A K+ + M+  G E     + V     C+  K+ +   + DE+ +
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMER 341

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              ++ +      L+   F K +   +A ++L+E+R +  KP  + + IV +     G +
Sbjct: 342 LSTALPDVVTYNTLVDACF-KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKL 400

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E    L+K  + G+AP    Y   I        + +A  L + +V     +D   LN +
Sbjct: 401 EEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTV 460

Query: 338 I-------------------------------GSVSS-----IDPRSAIVFFNFMIEKGR 361
           +                               G+V +      +P  A+  ++ MIE+  
Sbjct: 461 LYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKL 520

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P++ST + L K LC+  +  E ++    L       D  +YN+++   C  G L  A+ 
Sbjct: 521 IPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFR 580

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
              +M      PDV   N+LM   C    L  A KL++     G   ++ TYN LI    
Sbjct: 581 FHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMC 640

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +VG+++ AL  F +M  KG+ PDA TY  +L  L +    + A  + +K
Sbjct: 641 KVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHK 689



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/514 (20%), Positives = 203/514 (39%), Gaps = 56/514 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++ + +    I     V++ +       D   Y  +   L Q     +AF + +E+
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEM 339

Query: 146 KFNCEDIGPEICNSLLAVLASDGYID---------NALKMFDEMSHRGVEFSTIGFGVFI 196
           +         +  +L  V+  +  +D         +AL++ +EM  +GV+ + +   + +
Sbjct: 340 E--------RLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVV 391

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  KL + L  L+++   E  +    +    +I  +CK   V +AF ++DE+  + 
Sbjct: 392 KSLCKEGKLEEALGKLEKIA--EEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            K D      V      M    + E +L    + G  P    Y   +     E     A 
Sbjct: 450 LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPAL 509

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L + ++  K        N LI  +  ++  + AI   N ++EKG VP  +T + +    
Sbjct: 510 RLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAY 569

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK    +     +  +  N +  D+ + N +++ LC  G+L +A  + +    KG   DV
Sbjct: 570 CKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDV 629

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L+++ C+   +  A   +D M   G   +  TYN+++S  SE G  E A  + H 
Sbjct: 630 ITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHK 689

Query: 496 MLEKGV-------------------------APDA-----------TTYTSLLEGLCQET 519
           + + G                           P+A            TY   L GLC   
Sbjct: 690 LADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGG 749

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
            L+ A  V ++ +   + +  S   T M  L +R
Sbjct: 750 QLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKR 783



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 161/365 (44%), Gaps = 4/365 (1%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           F + +   C    L   L+ L  ++     +   +V    +++  C+   + EA  +L  
Sbjct: 211 FNLLVHTHCSKGTLADALATLSTMQGF--GLSPDAVTYNTLLNAHCRKGMLGEARALLAR 268

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++     P    Y  +   F  +G + +   V++     G  P    Y    +GL    +
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK 328

Query: 312 ICEAKELGEVIVSGKFTIDDDV-LNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLS 369
           + EA  L + +      + D V  N L+ +       S A+     M +KG  PTL T +
Sbjct: 329 VDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            + K+LCK  K +E +   + ++      D+ +YN ++   C +G + +A+ ++ EM  K
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL  D    N+++   C+      A++L       G   +  +Y  +++ + +    E A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           LRL+  M+E+ + P  +TY +L++GLC+   L+ A +  N+ V   ++   +  +  + +
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568

Query: 550 LCRRG 554
            C+ G
Sbjct: 569 YCKEG 573



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N++V   C+ G L +A   +  M+  GL PD   YN+L+ A CR+ +L  A+ L  +M
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 269

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G +    TYN L+S F+ +G I+ A ++  +M   G  PD  TY  L  GLCQ   +
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKV 329

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS--DLGHSD---SH 576
             AF + ++       L   +    ++  C +  +  ++  LR L    D G      +H
Sbjct: 330 DEAFRLKDEMERLSTALPDVVTYNTLVDACFK--WRCSSDALRLLEEMRDKGVKPTLVTH 387

Query: 577 VILLKSLADAREVEMAIEHIKWIQE 601
            I++KSL    ++E A+  ++ I E
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAE 412



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 12/259 (4%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL+AL  S S++ P++++  F  +IE    P   T + L    C +    + +     + 
Sbjct: 177 VLSALSRSPSTL-PQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ 235

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +YN +++  C  G L EA  ++  MKR G+ P    YN+L+ A  R   ++
Sbjct: 236 GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIK 295

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSL 511
            A K+ + M A G   +L+TYN+L     + G+++ A RL   M     A PD  TY +L
Sbjct: 296 QATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTL 355

Query: 512 LEGL----CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           ++      C    L+   E+ +K V   ++    ++     SLC+ G    A   L  ++
Sbjct: 356 VDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK----SLCKEGKLEEALGKLEKIA 411

Query: 568 SDLGHSDSHVILLKSLADA 586
            +    D  VI   +L DA
Sbjct: 412 EEGLAPD--VITYNTLIDA 428


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 193/439 (43%), Gaps = 12/439 (2%)

Query: 82  HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR------FIIPSLIQGKNT 135
           HS +S    L +  L R+++      + +KV K+ LD    R        I SL +    
Sbjct: 23  HSLVSDGCGLPADLLVRELSKAGRAEECLKVVKLMLDRQQLRERHLVNITIDSLCKSDMI 82

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            KA S F E+K     +     N L+        ID A+++F EM   G   ST  +   
Sbjct: 83  DKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTL 142

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
           I   C   +LG+     + +    +S    S I   +++ GFCK  RV EA ++L+EL  
Sbjct: 143 IGGLCRVERLGEAQQFYERLL---SSGAGASFITYNILVDGFCKADRVPEAVELLNELVA 199

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R        Y  + +     G + E E+   +  K GV P+   +   I GL    R+  
Sbjct: 200 RGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVAR 259

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           AKE+    +    +    + + L+ G         A   F  M  +G  P   + + L  
Sbjct: 260 AKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILIN 319

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  +  +  EV++ +       D+ +Y+  +  LC + R+ +A  V+  +  KG  P
Sbjct: 320 GLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTP 379

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWD-QMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           DV  Y +L+   C    L  A+K+++  M A+GC+ N  T N+L++ F   G ++ A  L
Sbjct: 380 DVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEAREL 439

Query: 493 FHNMLEKGVAPDATTYTSL 511
           F   +E+GV PD  T++++
Sbjct: 440 FQRFVERGVQPDCRTFSAM 458



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 174/442 (39%), Gaps = 55/442 (12%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS----MLDEV 215
           ++  L   G +D AL++F  +   G         + + +  +  +  + L     MLD  
Sbjct: 5   IVLCLCHVGKLDEALELFHSLVSDGCGLPA---DLLVRELSKAGRAEECLKVVKLMLDRQ 61

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + RE  ++N      + I   CK   +++A     EL+      + ++Y I+   F    
Sbjct: 62  QLRERHLVN------ITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTK 115

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E   +  + +  G AP T+ Y   I GL      C  + LGE               
Sbjct: 116 RIDEAIQLFGEMKAPGCAPSTSTYNTLIGGL------CRVERLGE--------------- 154

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        A  F+  ++  G   +  T + L    CK ++  E VE+   L A  
Sbjct: 155 -------------AQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARG 201

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
                  YN ++  L   G++ EA      M++ G+ P    +  L++  C+ + +  AK
Sbjct: 202 GVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAK 261

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +++     SG S ++   + L+  F + G ++ A R+F  M  +G  P+  +   L+ GL
Sbjct: 262 EIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGL 321

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD- 574
           C+   L  A EVF + V           STFM  LCR      A ++L  L    G  D 
Sbjct: 322 CKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDV 381

Query: 575 -------SHVILLKSLADAREV 589
                  S +  L  L +AR+V
Sbjct: 382 VMYTALISGLCSLGRLDEARKV 403



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 4/227 (1%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-K 429
           L + L K  +++E ++V K++       +    N+ +  LC S  + +A    QE+K  +
Sbjct: 37  LVRELSKAGRAEECLKVVKLMLDRQQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFR 96

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL   VS YN L+ A C+   +  A +L+ +M A GC+ +  TYN LI     V  +  A
Sbjct: 97  GLVNTVS-YNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEA 155

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
            + +  +L  G      TY  L++G C+   +  A E+ N+ V    ++  +  +  + +
Sbjct: 156 QQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDT 215

Query: 550 LCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
           L ++G    A      +  D       +  +L+  L  A  V  A E
Sbjct: 216 LFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKE 262


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 130/559 (23%), Positives = 234/559 (41%), Gaps = 51/559 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L L+  +   LV  ++   +    ++ + FF WA ++ NF H   +Y 
Sbjct: 75  KWGPDAEKALEVLKLK--VDHRLVRSILE--IDVEINVKIQFFKWAGKRRNFQHDCSTYM 130

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           ++++ L  +R    +   +++V  N  +++  +V   ++ +L + K   KA SVF + K 
Sbjct: 131 TLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                     NS++ +L  +G  +   +++ EM + G  F  TI +   I  + +  +  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRND 250

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + + DE++  +N M     I   ++  + K  +VE+A  + +E++   C P    Y  
Sbjct: 251 SAIRLFDEMK--DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTE 308

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRT---NDYREFILGLI--VERRICEAKELGEV 321
           + +     G V E     K   + G+ P     N+    ILG +  VE       E+G  
Sbjct: 309 LIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN-ILGKVGRVEELTNVFSEMGMW 367

Query: 322 IVSGKFTIDDDVLNALIGS---------------VSSIDP------------------RS 348
             +      + V+ AL  S                 S+ P                    
Sbjct: 368 RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A++    M EKG  P  +   +L   L K  + +   E++K L  N        Y VM+ 
Sbjct: 428 ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIK 487

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                G+L EA  +  EMK +G  PDV  YN+LM    +  ++  A  L  +M  +GC  
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF--- 525
           ++ ++NI+++ F+  G    A+ +F  +   G+ PD  TY +LL         + A    
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607

Query: 526 -EVFNKSVNHDVMLARSIL 543
            E+ +K   +D +   SIL
Sbjct: 608 REMKDKGFEYDAITYSSIL 626


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 205/459 (44%), Gaps = 9/459 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N++L VL   G ++ A  +  +M + G+  +   F + +  +C+   L +   ++D +  
Sbjct: 251 NTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMA- 309

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEFKLMGS 276
            +N+++       ++I G CK  +++EAF++ DE+   +  PD + Y  ++   F    S
Sbjct: 310 -QNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLN 335
           +   E++ K + K GV P    Y   +   + E ++  A  EL ++  SG F+ D    N
Sbjct: 369 LKGFELIDKMEGK-GVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG-FSPDCVTFN 426

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   +     A    + M  KG      TL+ +   LC   K D+  ++    S  
Sbjct: 427 TLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKR 486

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            YF D  SY  ++      G+  EA  +  EMK K + P +  YN+++   C       +
Sbjct: 487 GYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQS 546

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
               +++  SG   +  TYN +I  +   G++E A +  + M++K   PD  T   LL G
Sbjct: 547 IDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRG 606

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC E  L  A ++FN  ++    +     +T +  LC+   F  A  LL  +       D
Sbjct: 607 LCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666

Query: 575 SHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611
            +    +L +LADA  ++ A E +  I E      Q IS
Sbjct: 667 CYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTIS 705



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 105/479 (21%), Positives = 201/479 (41%), Gaps = 34/479 (7%)

Query: 68  LGFFNWASQ------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           LG+   A+Q      Q N      +Y+ ++  L    +I+    +  +++  K+  D   
Sbjct: 295 LGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVT 354

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I       ++ K F + ++++           N ++     +G +DNA     +M 
Sbjct: 355 YNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKME 414

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             G     + F   I  +C+  +L +   M+DE+ ++   M   SV    I+H  C  ++
Sbjct: 415 ESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKM--NSVTLNTILHTLCGERK 472

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +++A+K+L     R    D ++Y  +   +   G   E   +  + ++  + P    Y  
Sbjct: 473 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNT 532

Query: 302 FILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
            I GL    +  ++  +L E++ SG    D+   N +I G         A  F N M++K
Sbjct: 533 MIGGLCHSGKTDQSIDKLNELLESG-LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKK 591

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P L T + L + LC     D+ ++++    +     D  +YN ++S LC   R  EA
Sbjct: 592 SFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEA 651

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK----------KLWDQMFA------ 463
           + ++ EM+ K L PD   YN+++ A      ++ A+          KL DQ  +      
Sbjct: 652 FDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKI 711

Query: 464 -------SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
                       N  T++  I++    G+ + A+ +     +KG+    +TY SL+EGL
Sbjct: 712 ESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGL 770



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           + ++NAL+   S      +   F+ +I+ G     +T + L    C  NK  E + +   
Sbjct: 178 NTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGK 237

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +     F D  SYN ++  LC  G+L EA  ++ +MK  GL P+ + +N L+   C+   
Sbjct: 238 MKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGW 297

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L+ A ++ D M  +    ++ TYN+LI    + G+I+ A RL   M    + PD  TY +
Sbjct: 298 LKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNT 357

Query: 511 LLEGLCQETNLQAAFEVFNK 530
           L+ G    ++    FE+ +K
Sbjct: 358 LINGCFDCSSSLKGFELIDK 377



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR---EDLLRPAKKLWDQMFASGCSGNLK 471
           R   A  +   MKR  L P++   N+L+ A  R   +  +  +K ++  +   G   N  
Sbjct: 154 RPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTN 213

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T+NILI       ++  A+ L   M +    PD  +Y ++L+ LC++  L  A ++    
Sbjct: 214 TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            N+ ++  R+  +  +   C+ G    A +++
Sbjct: 274 KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVI 305


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 140/594 (23%), Positives = 258/594 (43%), Gaps = 63/594 (10%)

Query: 13  ISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN 72
           IS  +IS   + +P     P LE       L   LS +++  VI   +  +  L   FF 
Sbjct: 33  ISGEVISILAKKKPIE---PALEP------LVPFLSKNIITSVIKDEV--NRQLGFRFFI 81

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           WAS++     S  S+  ++  LS     +     L+++K   +++DS  +  +I +  + 
Sbjct: 82  WASRRER-LRSRESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKM 140

Query: 133 KNTQKAFSVFNEVK-FNCEDIGPEI--CNSLLAVLASDG-YIDNALKMFDEMSHRGVEFS 188
              +KA   F  +K F+C    P++   N +L V+  +  +   A  +++EM       +
Sbjct: 141 GMAEKAVESFGRMKEFDCR---PDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPN 197

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
              FG+ +    +  +      M D++  R  S     V   ++I G C+    ++A K+
Sbjct: 198 LYTFGILMDGLYKKGRTSDAQKMFDDMTGRGIS--PNRVTYTILISGLCQRGSADDARKL 255

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
             E++     PD +A+  + + F  +G + E   +L+   K G       Y   I GL  
Sbjct: 256 FYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFR 315

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLST 367
            RR  +A EL   ++      D  +   LI  +S       A+   + M  KG  P    
Sbjct: 316 ARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYC 375

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + + K LC R   +E   +   +S  + F D  ++ +++  +C +G +REA  +  E++
Sbjct: 376 YNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIE 435

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM-------------------------- 461
           + G  P V+ +N+L++  C+   L+ A+ L  +M                          
Sbjct: 436 KSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVES 495

Query: 462 ------------FA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
                       FA +G S ++ +YN+LI+ F   G+I+GAL+L + +  KG++PD+ TY
Sbjct: 496 GSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTY 555

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            +L+ GL +    + AF++F      D   + ++  + M   CR+   LVA  L
Sbjct: 556 NTLINGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNL 607



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 2/289 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   +N M++    P L T   L   L K+ ++ +  +++  ++      +  +Y +++S
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G   +A  +  EM+  G  PD   +N+L++  C+   +  A +L       G   
Sbjct: 242 GLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVL 301

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            L+ Y+ LI           A  L+ NML+K + PD   YT L++GL +   ++ A ++ 
Sbjct: 302 GLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLL 361

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
           +   +  +       +  + +LC RG       L   +S      D  +H IL+ S+   
Sbjct: 362 SSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRN 421

Query: 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
             V  A E    I++S  +        L   L  S   +   LLLH ++
Sbjct: 422 GLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME 470



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 122/541 (22%), Positives = 200/541 (36%), Gaps = 125/541 (23%)

Query: 138 AFSVFNE-VKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           AF+V+NE +K NC    P +     L+  L   G   +A KMFD+M+ RG+  + + + +
Sbjct: 182 AFAVYNEMLKCNC---SPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTI 238

Query: 195 FIWKFCENA--------------------------------KLGQVLSMLDEVRKRENSM 222
            I   C+                                  KLG+++   + +R  E   
Sbjct: 239 LISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEK-- 296

Query: 223 INGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            +G V+ +     +I G  + +R  +AF++   +  +  KPD I Y I+ +     G + 
Sbjct: 297 -DGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIE 355

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +   +L      G++P T  Y   I  L     + E + L   +   +   D      LI
Sbjct: 356 DALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILI 415

Query: 339 GSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR------------------- 378
            S+      R A   F  + + G  P+++T + L   LCK                    
Sbjct: 416 CSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPA 475

Query: 379 ----------NKS-DELVEVYKVLSAND---YFTD------MESYNVMVSFLCTSGRLRE 418
                     N+S D +VE   +L A     +F D      + SYNV+++  C +G +  
Sbjct: 476 SLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDG 535

Query: 419 AYGVIQEMKRKGLDPDVSFYN---------------------------------SLMEAC 445
           A  ++  ++ KGL PD   YN                                 SLM   
Sbjct: 536 ALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWS 595

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR+  +  A  LW +        + +T N +   F E GE E ALR    ++E     D 
Sbjct: 596 CRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCFKE-GETERALR---RLIELDTRKDE 651

Query: 506 TT---YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            T   YT  L GLCQ      A  VF+      +++        +  LC+R     A ++
Sbjct: 652 LTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLDAAIEV 711

Query: 563 L 563
            
Sbjct: 712 F 712



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L + N  D   +  + L +     D   + V++S     G   +A      MK     PD
Sbjct: 102 LSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPD 161

Query: 435 VSFYNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           V  YN ++    RE++    A  ++++M    CS NL T+ IL+    + G    A ++F
Sbjct: 162 VFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMF 221

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF---NKSVNHDVMLARSILSTFMISL 550
            +M  +G++P+  TYT L+ GLCQ  +   A ++F     S N+   +A + L   +   
Sbjct: 222 DDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNAL---LDGF 278

Query: 551 CRRGHFLVATKLLRGLSSD---LGHSDSHVILLKSLADAREVEMAIE 594
           C+ G  + A +LLR    D   LG    +  L+  L  AR    A E
Sbjct: 279 CKLGRMVEAFELLRLFEKDGFVLGLR-GYSSLIDGLFRARRYTQAFE 324


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/544 (24%), Positives = 238/544 (43%), Gaps = 75/544 (13%)

Query: 26  PARKWTPLLEQTLHQL----GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT 81
           P R ++ L +   H+      +  ++SPS V+ + +  L      AL F +W SQ P + 
Sbjct: 63  PHRLFSILSKPNWHKCPSLKSMVPAISPSHVSSLFS--LDLDPKTALNFSHWISQNPRYK 120

Query: 82  HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFS 140
           HS  SY S+L  L      N    V+ ++++  I + DS      +  L +  N  ++F 
Sbjct: 121 HSVYSYASLLTLLI----NNGYVGVVFKIRLLMIKSCDSVADTLFVLDLCRKMNKDESFE 176

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +  ++   C        N+LL  LA  G +D   +++ EM    V  +   +   +  +C
Sbjct: 177 LKYKLIIGCY-------NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC 229

Query: 201 ENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
           +   +    Q +SM+ E     +     S+I      G+C+ K ++ AFKV  E+ ++ C
Sbjct: 230 KVGNVEEANQYVSMIVEAGLDPDFFTYTSLIM-----GYCQRKDLDSAFKVFKEMPLKGC 284

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           + + +A                                   Y   I GL VERRI EA +
Sbjct: 285 RRNEVA-----------------------------------YTHLIHGLCVERRIDEAMD 309

Query: 318 LGEVIVSGKFTIDDD------VLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSN 370
           L    V  K   DDD          LI ++   + +S A+     M EKG  P + T + 
Sbjct: 310 L---FVKMK---DDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L  +LC + K ++  E+   +       ++ +YN +++  C  G + +A  V++ M+ + 
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P+   YN L++  C+ ++ + A  + ++M       ++ TYN LI      G  + A 
Sbjct: 424 LRPNTRTYNELIKGYCKRNVHK-AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           RL   M ++G+ PD  TYTS+++ LC+   ++ A ++F+     DV+    + +  +   
Sbjct: 483 RLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGY 542

Query: 551 CRRG 554
           C+ G
Sbjct: 543 CKAG 546



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 127/583 (21%), Positives = 238/583 (40%), Gaps = 37/583 (6%)

Query: 51  LVARVINPYLLTHHSLALGFF---NWASQQPNFTHSPL--------SYHSILKSLSLSRQ 99
           +V   ++P   T+ SL +G+    +  S    F   PL        +Y  ++  L + R+
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--C 157
           I+    +  ++K +        Y  +I +L   +   +A ++  E++   + I P I   
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEE--KGIKPNIHTY 361

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
             L+  L S   ++ A ++  +M  +G+  + I +   I  +C+   +   L +++ +  
Sbjct: 362 TVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMES 421

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R N   N      LI  G+CK + V +A  VL+++  R+  PD + Y  + +     G+ 
Sbjct: 422 R-NLRPNTRTYNELI-KGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L      G+ P    Y   I  L   +R+ EA +L + +       +  +  AL
Sbjct: 479 DSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTAL 538

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   +     A +    M+ K  +P   T + L   LC   K  E   + + +   D 
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDL 598

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + +  +++  L   G    AY   Q+M   G  PD   Y + ++  CRE  L+ A+ 
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAED 658

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE--- 513
           +  +M  +G S +L TY+ LI  + ++G    A  +   M + G  P   T+ SL++   
Sbjct: 659 MVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLL 718

Query: 514 ------------GLCQETNLQA---AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
                       G+C  +N+       E+  K V H V          M+ +C  G+  V
Sbjct: 719 EMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRV 778

Query: 559 ATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           A K+   +    G S S ++    L+   ++E   E  K + +
Sbjct: 779 AEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDD 821



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 194/461 (42%), Gaps = 64/461 (13%)

Query: 129 LIQG---KNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           LI+G   +N  KA  V N  K     + P++   NSL+      G  D+A ++   M+ R
Sbjct: 434 LIKGYCKRNVHKAMGVLN--KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+      +   I   C++ ++ +   + D + +++  +I   V+   +I G+CK  +V 
Sbjct: 492 GLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD--VIPNVVMYTALIDGYCKAGKVN 549

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL------------- 290
           EA  +L+++  + C P+ + +  +       G + E  ++ +K  K+             
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILI 609

Query: 291 ----------------------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                                 G  P  + Y  FI     E R+ +A+++   +     +
Sbjct: 610 HRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVS 669

Query: 329 IDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS------ 381
            D    ++LI     +    SA V    M + G  P+  T  +L K+L +          
Sbjct: 670 PDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGE 729

Query: 382 ------------DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
                       D +VE+ + +  +    + +SY  ++  +C  G LR A  V   M++K
Sbjct: 730 PGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQK 789

Query: 430 -GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G+ P    +N+L+  CC+ +    A K+ D M   G    L++  ILI +  + GE E 
Sbjct: 790 EGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKER 849

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
              +F N+L+ G   D   +  +++G+ ++  ++A +E+FN
Sbjct: 850 GTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFN 890



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 2/207 (0%)

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  YN+L+ +  R  L+   K+++ +M       N+ TYN +++ + +VG +E A +   
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVS 242

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            ++E G+ PD  TYTSL+ G CQ  +L +AF+VF +             +  +  LC   
Sbjct: 243 MIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVER 302

Query: 555 HFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612
               A  L   +  D  +    ++ +L+K+L  +     A+  +K ++E           
Sbjct: 303 RIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYT 362

Query: 613 ELFASLSSSSYPEPILLLLHALQEKCL 639
            L  SL S    E    LL  + EK L
Sbjct: 363 VLIDSLCSQCKLEKARELLGQMLEKGL 389



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 65/405 (16%)

Query: 103 IDSVLKQVKVNK--ITLDSSVYRFIIP------SLIQGKNTQKAF--SVFNEVKFNCEDI 152
           ID   K  KVN+  + L+  + +  +P      +LI G  T      +   E K    D+
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDL 598

Query: 153 GPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P +    + +  L  DG  D+A + F +M   G +     +  FI  +C   +L     
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAED 658

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD---FIAYRIV 267
           M+   + +EN +         +I G+    R   AF VL  +    C+P    F++    
Sbjct: 659 MV--AKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKH 716

Query: 268 AEEFK------------LMGSVFEREVV---LKKKRKLGVAPRTNDYREFILGLIVERRI 312
             E K            +M ++ E ++V   L+K  + GV P    Y + +LG      I
Sbjct: 717 LLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLG------I 770

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           CE   +G + V+ K                        VF +   ++G  P+    + L 
Sbjct: 771 CE---IGNLRVAEK------------------------VFDHMQQKEGISPSELVFNALL 803

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              CK  K +E  +V   +    +   +ES  +++  L   G       V Q + + G  
Sbjct: 804 SCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYY 863

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            D   +  +++   ++ L+    +L++ M  +GC+ + +TY++LI
Sbjct: 864 DDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 211/478 (44%), Gaps = 18/478 (3%)

Query: 80  FTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           +T   +++  +LK+L    R   A+D  L+++ V   T +   Y  ++  L     +Q+A
Sbjct: 122 WTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQA 181

Query: 139 FSVFNEVKFNCEDIG---PEIC--NSLLAVLASDG-YIDNALKMFDEMSHRGVEFSTIGF 192
             + + +    +  G   P++   N+++  L  +G  +D A  +FD+M  +G+    + +
Sbjct: 182 LHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTY 241

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I    +   + +   +L  VR  +N  +   +    ++HG+C   +  +A  V   +
Sbjct: 242 NSIISALSKARAMDKAAVVL--VRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
                +PD   Y  +       G   E   +     K G  P +  Y   + G   E  +
Sbjct: 300 CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSL 359

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLS 369
            +   L +++V      D  + N LIG+ +    +D   A++ F+ M  +G  P   T  
Sbjct: 360 VKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVD--DAMLLFSKMRRQGLNPDTVTYG 417

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            +   LC   K D+ +  +  L +     D   +  ++  LC   +  +A  +  EM  +
Sbjct: 418 IVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGR 477

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ P+  F+N+L+   C+E ++  AK ++D M       ++ TYN LI  +   G+++ A
Sbjct: 478 GICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEA 537

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSIL 543
            +L   M+  GV P+  TY +++ G C+   ++ AF +F    +K VN  ++   +IL
Sbjct: 538 AKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTIL 595



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 219/510 (42%), Gaps = 20/510 (3%)

Query: 85  LSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           +SY++++  L    RQ++    +  Q+    ++ D   Y  II +L + +   KA  V  
Sbjct: 203 VSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLV 262

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
            +  N         NSLL    S G  ++A+ +F  M   GVE     +   +   C+N 
Sbjct: 263 RMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNG 322

Query: 204 KLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +  +   + D + KR    NS   G+     ++HG+     + +   +LD +     +PD
Sbjct: 323 RSMEARKIFDSMVKRGHKPNSATYGT-----LLHGYATEGSLVKMHHLLDMMVRNGIQPD 377

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELG 319
              + I+   +   G V +  ++  K R+ G+ P T  Y   +  L +  ++ +A  + G
Sbjct: 378 HYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFG 437

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
            +I  G  T D  V   LI  + + D    A      MI +G  P     + L  +LCK 
Sbjct: 438 RLISEG-LTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKE 496

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                   ++ ++   D   D+ +YN ++   C  G++ EA  +++ M   G+ P+   Y
Sbjct: 497 GMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTY 556

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+++   C+   +  A  L+ QM + G +  + TY+ ++    +      A  L+  M++
Sbjct: 557 NTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIK 616

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF-- 556
            G+  D  TY  +L GLCQ      A  +F      D  L     +  + +L + G    
Sbjct: 617 SGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDE 676

Query: 557 ---LVATKLLRGLSSDLGHSDSHVILLKSL 583
              L A+ L RGL  ++    ++ +++KSL
Sbjct: 677 AKDLFASLLARGLVPNV---VTYWLMMKSL 703



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/474 (20%), Positives = 208/474 (43%), Gaps = 46/474 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SI+ +LS +R ++    VL ++  N    +   +  ++           A  VF  
Sbjct: 239 VTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKR 298

Query: 145 VKFNCED-IGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +   C D + P++   N+L+  L  +G    A K+FD M  RG + ++  +G  +  +  
Sbjct: 299 M---CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYAT 355

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              L ++  +LD + +  N +     I  ++I  + K  +V++A  +  ++R +   PD 
Sbjct: 356 EGSLVKMHHLLDMMVR--NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT 413

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y IV +   ++G V +      +    G+ P    +R  I GL    +  +A+EL   
Sbjct: 414 VTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVE 473

Query: 322 IVSGKFTIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           ++      ++   N L+  +    +  R+  +F + M+       + T + L    C   
Sbjct: 474 MIGRGICPNNIFFNTLLNHLCKEGMVARAKNIF-DLMVRVDVQRDVITYNTLIDGYCLHG 532

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE  ++ + +  +    +  +YN M++  C +GR+ +A+ + ++M  KG++P +  Y+
Sbjct: 533 KVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYS 592

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM--- 496
           ++++   +      AK+L+  M  SG   ++ TYNI++    +    + ALR+F N+   
Sbjct: 593 TILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLI 652

Query: 497 --------------------------------LEKGVAPDATTYTSLLEGLCQE 518
                                           L +G+ P+  TY  +++ L ++
Sbjct: 653 DFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQ 706



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 160/341 (46%), Gaps = 12/341 (3%)

Query: 232 IIHGFCKGKRVEEAFKV-LDELRIRECKPDFIAYRIV----AEEFKLMGSV-FEREVVLK 285
           ++   C  KR  EA  + L  + +  C P+  +Y I+     +E +   ++     +++ 
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 286 KKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-- 342
              + G  P    Y   I GL+ E R++  A  L + ++    + D    N++I ++S  
Sbjct: 192 DDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKA 251

Query: 343 -SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            ++D ++A+V    M++ G +P   T ++L    C   K ++ + V+K +  +    D+ 
Sbjct: 252 RAMD-KAAVVLVR-MVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVF 309

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++ +LC +GR  EA  +   M ++G  P+ + Y +L+     E  L     L D M
Sbjct: 310 TYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMM 369

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +G   +   +NILI  +++ G+++ A+ LF  M  +G+ PD  TY  +++ LC    +
Sbjct: 370 VRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKV 429

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
             A   F + ++  +     +    +  LC R  +  A +L
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEEL 470



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 42/398 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALK 175
           D+  Y  ++ +L        A + F   +   E + P+  +  +L+  L +    D A +
Sbjct: 412 DTVTYGIVMDALCMVGKVDDAMAQFG--RLISEGLTPDAVVFRNLIHGLCARDKWDKAEE 469

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIH 234
           +  EM  RG+  + I F   +   C+   + +  ++ D + + +   +   VI    +I 
Sbjct: 470 LAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVD---VQRDVITYNTLID 526

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+C   +V+EA K+L+ + +   KP+ + Y  +   +   G + +   + ++    GV P
Sbjct: 527 GYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNP 586

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y   + GL   RR   AKEL                                  + 
Sbjct: 587 GIVTYSTILQGLFQARRTAAAKEL----------------------------------YL 612

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +MI+ G    + T + +   LC+ N +D+ + +++ L   D+  +  ++N+M+  L   G
Sbjct: 613 WMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGG 672

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R  EA  +   +  +GL P+V  Y  +M++   + LL     L+  +  +GC+ N +  N
Sbjct: 673 RHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLN 732

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            L+ K  + GE+  A      + E   + +A+T  SL+
Sbjct: 733 ALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLV 770



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL-WDQ 460
           +Y+V++      G L  A+  +  + R G   +   ++ L++A C +     A  +   +
Sbjct: 93  TYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRR 152

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML-----EKGVAPDATTYTSLLEGL 515
           M   GC+ N+ +Y IL+    +    + AL L H M+       G  PD  +Y +++ GL
Sbjct: 153 MPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGL 212

Query: 516 CQET-NLQAAFEVFNKSVNH----DVMLARSILSTF 546
            +E   L  A+ +F++ ++     DV+   SI+S  
Sbjct: 213 LREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 220/491 (44%), Gaps = 17/491 (3%)

Query: 49  PSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLK 108
           P L  RV++  +     +AL FF W   QP+F  S   + +IL  L  +  ++A   V++
Sbjct: 85  PHLFIRVLHS-MRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVME 143

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLAS 166
           +V        S     ++  LI G        VF+++  N   + P++  CN +L VL  
Sbjct: 144 RVV-------SFEMHGVVDVLIAGH--VXCLLVFDKMIRN--GLLPDVKNCNRILRVLRD 192

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           +  +  A  ++  M   G++ + + +   +  +C+  ++ Q L +L E+++R        
Sbjct: 193 ENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQER--GCYPND 250

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   ++++G  K   +E+A  +++E+           Y  +   F   G   E   ++++
Sbjct: 251 VTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
                  P  + Y   + GL    ++   +     ++  KFT D    N+L+ G   +  
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A + F+ +  +  VPT+ T + L   LC     D  + + K ++    F D+ +Y +
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +V+     G +  A G   EM  KGL PD   YN+ +    +      A  + ++M A+G
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              ++ TYN+ +    + G  E A  L  NM+  G+ PD  TYTS++ G  +  +L+ A 
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAR 550

Query: 526 EVFNKSVNHDV 536
           EVFN+ ++  V
Sbjct: 551 EVFNEMLSKGV 561



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/477 (20%), Positives = 199/477 (41%), Gaps = 19/477 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L S     +++    +L +++      +   Y  ++  L +    ++A  +  E
Sbjct: 216 VTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEE 275

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  +  ++     N L+      G    A  + +EM +R    +   +   ++  C   K
Sbjct: 276 MLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLC---K 332

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKP 259
             QV      VR R + M+       ++     ++G+C+   + EAF + DEL+ R+  P
Sbjct: 333 WVQVTG----VRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVP 388

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAK 316
             I Y  +     + G +   +  L+ K+++   G+ P    Y   + G      +  A+
Sbjct: 389 TVITYNTLIHGLCMWGYL---DAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMAR 445

Query: 317 ELGEVIVSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
                ++S     D    N  ++G +   D   A      M+  G  P + T +     L
Sbjct: 446 GFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHAL 505

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C++   +E  ++ + + ++    D  +Y  +++    +G LR+A  V  EM  KG+ P V
Sbjct: 506 CQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSV 565

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  L+ A   + +L  A   + +M       N+ TYN +I+       ++ A + F  
Sbjct: 566 VTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDE 625

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           M EKG+ P+  +YT L+   C     + A  ++ + ++  +       S F+ +L R
Sbjct: 626 MEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHR 682



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 2/242 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +  M + G  PT+ T + +  + CK  + D+ +E+   +     + +  +YNV+V+ L  
Sbjct: 203 YGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSK 262

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L +A G+I+EM   GL+     YN L+   C++ L   A  L ++M        L T
Sbjct: 263 KGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L+    +  ++ G    F +ML+    PD  ++ SLL G C+   +  AF +F++  
Sbjct: 323 YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELK 382

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
             D++      +T +  LC  G+   A +L + ++      D  ++ IL+        V 
Sbjct: 383 CRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVS 442

Query: 591 MA 592
           MA
Sbjct: 443 MA 444



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%)

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V+  +  N    D+++ N ++  L     L +A  V   M++ G+ P V  YN+++++ C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E  +  A +L  +M   GC  N  TYN+L++  S+ GE+E A  L   ML  G+   A 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           TY  L+ G CQ+     AF++  + VN       S  +T M  LC+
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 4/218 (1%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            ++ F+ MI  G +P +   + + + L   N   +   VY ++        + +YN M+ 
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  GR+ +A  ++ EM+ +G  P+   YN L+    ++  L  AK L ++M  SG + 
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNV 283

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC---QETNLQAAF 525
           +  TYN LI+ F + G    A  L   M+ +   P  +TY +L+ GLC   Q T ++  F
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343

Query: 526 -EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            ++       D++   S+L  +  + C    FL+  +L
Sbjct: 344 SDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL 381


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 125/568 (22%), Positives = 246/568 (43%), Gaps = 64/568 (11%)

Query: 57  NPYLLTHHSLALGFFNWA--SQQPNFTHSPL---------SYHSILKSLSLSRQINAIDS 105
           +P ++T++++  G F     S+  N  H  +         +Y SI+ +L  +R ++  + 
Sbjct: 224 SPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAEL 283

Query: 106 VLKQV-----KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CN 158
           VL+Q+     + NK+T +  ++ + I    Q K T   F      +   + + P I  CN
Sbjct: 284 VLRQMISNGFQPNKVTYNCMIHGYSISG--QWKETAGMFR-----EMTSQGLMPNIVTCN 336

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           S ++ L   G    A + FD M+ +G + + + + V +  +   A  G  + ML+     
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGY---ATEGCFVDMLNLFNSM 393

Query: 219 E-NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           E N ++    +  ++I  + K   ++E   +  +++ +   PD   Y IV   F  MG +
Sbjct: 394 EGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRL 453

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +      +   +G+ P    Y   I G  +   + +AKEL   ++S             
Sbjct: 454 ADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI---------- 503

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                   PR  IVFFN +I                +LCK  +  E  +++  +      
Sbjct: 504 --------PRPNIVFFNSII---------------NSLCKEGRVVEAHDIFDFVIHIGER 540

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ ++N ++      G++ +A+GV+  M   G++PDV  YN+L++  CR   +     L
Sbjct: 541 PDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLIL 600

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M + G      TY I++      G   GA ++ H M+E G   D +T   +L GLC+
Sbjct: 601 FGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDS 575
                 A  +F K    +V    +I++T + ++ +      A +L   +S+   + ++ +
Sbjct: 661 NNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNAST 720

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESS 603
           + +++K+L     VE A      +++S 
Sbjct: 721 YGVMIKNLLKEGSVEEADNMFSLMEKSG 748



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 165/391 (42%), Gaps = 47/391 (12%)

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +   M   GVE  TI +   +   CE+++  + L +L  + K+        V    +IHG
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             +   V +A  +  E+  +   PD + Y  + +      ++ + E+VL++    G  P 
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
              Y   I G  +               SG++                   +     F  
Sbjct: 297 KVTYNCMIHGYSI---------------SGQW-------------------KETAGMFRE 322

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  +G +P + T ++   +LCK  KS E  E +  ++A  +  ++ +Y+V++    T G 
Sbjct: 323 MTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGC 382

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +   +   M+  G+  D   +N +++A  +  ++     ++ QM   G   +  TY I
Sbjct: 383 FVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGI 442

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I+ FS +G +  A+  F+ M+  G+ P+   Y SL++G C   NL  A E+ ++     
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSE----- 497

Query: 536 VMLARSI-------LSTFMISLCRRGHFLVA 559
            M++R I        ++ + SLC+ G  + A
Sbjct: 498 -MMSRGIPRPNIVFFNSIINSLCKEGRVVEA 527



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 189/445 (42%), Gaps = 18/445 (4%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
             +PN     +  H           +N  +S+    + N I  D  V+  +I +  +   
Sbjct: 362 GHKPNLVTYSVLLHGYATEGCFVDMLNLFNSM----EGNGIVADQRVFNIVIDAYGKRGM 417

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             +   +F +++   + + P+ C    ++A  +  G + +A+  F++M   G++   I +
Sbjct: 418 MDETMLIFTQMQE--QGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVY 475

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-E 251
              I  FC +  L +   ++ E+  R     N  V    II+  CK  RV EA  + D  
Sbjct: 476 HSLIQGFCMHGNLVKAKELVSEMMSRGIPRPN-IVFFNSIINSLCKEGRVVEAHDIFDFV 534

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           + I E +PD I +  + + + L+G + +   VL      G+ P    Y   I G     R
Sbjct: 535 IHIGE-RPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGR 593

Query: 312 ICEAKEL-GEVIVSG--KFTIDDDV-LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           I +   L GE++  G    TI   + L+ L     ++  +      + MIE G    +ST
Sbjct: 594 IDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKK---MCHEMIESGTTMDIST 650

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              +   LC+ N  DE + ++K L A +   ++   N M+  +    +  EA  +   + 
Sbjct: 651 CGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSIS 710

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             GL P+ S Y  +++   +E  +  A  ++  M  SGC+ + +  N +I    E GEI 
Sbjct: 711 ATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIV 770

Query: 488 GALRLFHNMLEKGVAPDATTYTSLL 512
            A      +  K ++ +A+T + L+
Sbjct: 771 KAGNYMFKVDGKRISLEASTVSLLM 795



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P V  YN LM+ CCR         L+ +   +G   ++   +IL+         +  + L
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 493 F-HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS--TFMIS 549
             H M E GV PD  +Y ++++ LC+++  Q A ++ +  V      + ++++  T +  
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 550 LCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
           L R G    A  L      +G+  D+    ++  ++ +L  AR ++ A
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDV---VTYTSIIDALCKARAMDKA 281


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/564 (23%), Positives = 241/564 (42%), Gaps = 57/564 (10%)

Query: 15  QAIISASNR-TRPARKWTPLLEQTLHQLG----LRDSLSPSLVARVINP----YLLTHHS 65
           QA+++A  R  +PARK   L+ +   + G     R +   S+ AR I P    Y    H+
Sbjct: 270 QAVVTAFERIKKPARKEYGLMVKYYGRRGDMHHARQTFE-SMRARGIEPSSHVYSSLIHA 328

Query: 66  LALGFFNWAS-------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
            A+G     +       ++     + ++Y  I+   +     +A D   ++ K    +L+
Sbjct: 329 YAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLN 388

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           + +Y  II +  Q  N  +A ++  E++    D   +I ++++      G  +  L +FD
Sbjct: 389 AVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFD 448

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFC 237
            +   G   S I +G  I  +    K+G+V   L+  +  + S I  ++    ++I+GF 
Sbjct: 449 RLKECGFFPSVISYGCLINLY---TKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFL 505

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-------------------- 277
           K K    AF V ++      KPD + Y  +   F  MG++                    
Sbjct: 506 KLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTR 565

Query: 278 --------FEREVVLKKK-------RKLGVAPRTNDYREFILGLIVERRICEAKE-LGEV 321
                   F R   +++        R+ G  P  + Y   ILGL+ +R++ +A   L E+
Sbjct: 566 TFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEM 625

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            V+G    +      + G  S  D   A  +F  +  +G    + T   L K+ CK  + 
Sbjct: 626 NVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRM 685

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
              + V K +SA +   +   YN+++      G + EA  ++Q+M+++GL PD+  Y S 
Sbjct: 686 QSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSF 745

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + ACC+   ++ A ++  +M ASG   NLKTY  LI+ ++     E AL  F  M   G 
Sbjct: 746 INACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGF 805

Query: 502 APDATTYTSLLEGLCQETNLQAAF 525
            PD   Y  L+  L        ++
Sbjct: 806 KPDKAVYHCLVTSLLSRATFAQSY 829



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/476 (18%), Positives = 196/476 (41%), Gaps = 5/476 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           + +SL+   A    ++ AL    +M   G+E + + + + +  F +           +E 
Sbjct: 321 VYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEA 380

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +++  S+   +VI   II+  C+   ++ A  ++ E+  +        Y  + + + ++G
Sbjct: 381 KEKLPSL--NAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIG 438

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           +  +  +V  + ++ G  P    Y   I       ++ +A E+ +++       +    +
Sbjct: 439 NEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYS 498

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G +   D  +A   F    + G  P +   +N+    C     D  + + + +   
Sbjct: 499 MLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKE 558

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     +G +R A  +   M+R G  P V  YN+L+     +  +  A
Sbjct: 559 RHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKA 618

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D+M  +G   N  TY  L+  ++ +G+ E A + F  +  +G+  D  TY +LL+ 
Sbjct: 619 VAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKS 678

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 679 CCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPD 738

Query: 575 SHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628
            H     + +   A +++ A E I+ ++ S      +    L    + +S PE  L
Sbjct: 739 IHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKAL 794



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/419 (20%), Positives = 170/419 (40%), Gaps = 50/419 (11%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +G+ +  +     +       + +R R   +   S +   +IH +  G+ +EEA   + +
Sbjct: 287 YGLMVKYYGRRGDMHHARQTFESMRAR--GIEPSSHVYSSLIHAYAVGRDMEEALHCVRK 344

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILGLIVER 310
           ++    +   + Y I+   F  MG+    +   ++ K KL   P  N     I G I+  
Sbjct: 345 MKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKL---PSLN---AVIYGGIIYA 398

Query: 311 --RIC---EAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPT 364
             +IC    A+ L   +         D+ + ++   + I +    ++ F+ + E G  P+
Sbjct: 399 HCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPS 458

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + +   L     K  K  + +E+ K++  +    +M++Y+++++          A+ V +
Sbjct: 459 VISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFE 518

Query: 425 EMKRKGLDPDVSFYNSLMEACC-----------------------------------RED 449
           +  + GL PDV  YN+++ A C                                   R  
Sbjct: 519 DFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAG 578

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +R A +++D M  SGC   + TYN LI    E  ++  A+ +   M   GV P+  TYT
Sbjct: 579 EMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYT 638

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +L++G     + + AF+ F    N  + +        + S C+ G    A  + + +S+
Sbjct: 639 TLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSA 697


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 214/489 (43%), Gaps = 7/489 (1%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H+P  + ++ IL S +  +  +   S+  ++++  I  D      +I            F
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++            N+L+  L   G +  AL   D++  +G + + + +   I   
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C   K+G     +  +RK +  +   +V +   II   CK + V EA+ +  E+ ++   
Sbjct: 175 C---KIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 231

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
            D + Y  +   F + G + E   +L +     + P    Y   +  L  E ++ EAK +
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSV 291

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
             V++      D    + L+ G     + + A   FN M   G  P + T + L    CK
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 351

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE + ++K +   +    + +Y+ ++  LC SGR+   + +I EM+ +G   DV  
Sbjct: 352 NKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVIT 411

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+SL++  C+   L  A  L+++M       N+ T+ IL+    + G ++ A  +F ++L
Sbjct: 412 YSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLL 471

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            KG   +  TY  ++ G C++  L+ A  + +K  ++  +       T +I+L ++    
Sbjct: 472 TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDEND 531

Query: 558 VATKLLRGL 566
            A KLLR +
Sbjct: 532 KAEKLLRQM 540



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 164/373 (43%), Gaps = 19/373 (5%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+  F K K    A  +   L ++  +PD I   I+   F  MG +     VL K  K G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      I GL ++ ++ +A    + +++  F ++      LI  V  I D R AI
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 184

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                +  +   P +   S +   LCK     E   ++  ++      D+ +Y+ ++   
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+L+EA G++ EM  K ++P+V  YN L++A C+E  ++ AK +   M  +    ++
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  V E++ A  +F+ M   GV PD  TYT L+ G C+   +  A  +F +
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL-------------GH 572
               +++      S+ +  LC+ G       L+     RG  +D+             GH
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424

Query: 573 SDSHVILLKSLAD 585
            D  + L   + D
Sbjct: 425 LDRAIALFNKMKD 437



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/511 (21%), Positives = 223/511 (43%), Gaps = 57/511 (11%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT---------HSP--LSYHSILKSL 94
           SLS  L  + I P L+T + L   F +       F+         + P  ++ ++++K L
Sbjct: 80  SLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGL 139

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
            L  Q+        ++      L+   Y  +I  + +  +T+ A  +  ++         
Sbjct: 140 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV 199

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           E+ ++++  L     +  A  +F EM+ +G+    + +   I+ FC   KL + + +L+E
Sbjct: 200 EMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNE 259

Query: 215 VRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEFK 272
           +  +    IN +V    +++   CK  +V+EA  VL  + ++ C KPD I Y  + + + 
Sbjct: 260 MVLKT---INPNVYTYNILVDALCKEGKVKEAKSVL-AVMLKACVKPDVITYSTLMDGYF 315

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L+  V + + V      +GV P  + Y   I G       C+ K + E            
Sbjct: 316 LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF------CKNKMVDE------------ 357

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                           A+  F  M +K  VP + T S+L   LCK  +   + ++   + 
Sbjct: 358 ----------------ALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMR 401

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y+ ++  LC +G L  A  +  +MK + + P++  +  L++  C+   L+
Sbjct: 402 DRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLK 461

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++++  +   G   N+ TYN++I+   + G +E AL +   M + G  P+A T+ +++
Sbjct: 462 DAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
             L ++     A ++  +      M+AR +L
Sbjct: 522 IALFKKDENDKAEKLLRQ------MIARGLL 546



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++++  +      A  L  ++   G   +L T NILI+ F  +G+I     +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L++G  PD  T  +L++GLC +  ++ A    +K +     L +   +T +  +C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            G    A KLLR +   L  +  +V +  ++ DA
Sbjct: 177 IGDTRGAIKLLRKIDGRL--TKPNVEMYSTIIDA 208


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 182/406 (44%), Gaps = 8/406 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +++A  +F+ M  +G   + + +   I   CE  ++ + +++  ++R  E+         
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMR--EDDCYPTVRTY 77

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            +I+H   +  R  EA  +  E+R R C+P+   Y ++         + E   +L +  +
Sbjct: 78  TVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
            G+ P    Y   I G   E  +  A+E+ +++ S     ++   N LI G     +   
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+   + M+E    P++ T ++L    CK    D    +  +++ N    D  +Y+V + 
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  GR+ EA  +   +K KG+  +   Y +L++  C+   +  A  L D+M    C  
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP 317

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  TYN LI    +  +++ AL L  +M++KG+     TYT L+  + +E +   A  + 
Sbjct: 318 NSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           ++ V+        I + F+ + C RG+   A  ++     RG+  D
Sbjct: 378 DQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD 423



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 9/408 (2%)

Query: 134 NTQKAFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           +   AFSVFN + K  C        N L+  L   G +D  + +F +M       +   +
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTN-LIHGLCEVGRVDEGINIFKKMREDDCYPTVRTY 77

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            V +    E+ +  + +++  E+R+R  E ++   +V+    I+  CK  ++EE  ++LD
Sbjct: 78  TVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVM----INAMCKETKLEEGRRILD 133

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +   P    Y  + + +   G V   + +L         P    Y E I G   ++
Sbjct: 134 EMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKK 193

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLS 369
            +  A  L   ++  + T      N+LI     I    SA    N M E G VP   T S
Sbjct: 194 NVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYS 253

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
                LCK+ + +E   ++  L       +   Y  ++   C +G++ +A  ++  M  +
Sbjct: 254 VFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTE 313

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
              P+ S YN+L++  C+E  ++ A  L + M   G    + TY ILI    + G+ + A
Sbjct: 314 DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYA 373

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            R+   M+  G  PD   YT+ +   C   N++ A ++ +      VM
Sbjct: 374 HRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVM 421



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 194/456 (42%), Gaps = 37/456 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+     +G ++ A ++ D M       +   +   I  FC    + + +++L ++  
Sbjct: 148 NALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKML- 206

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E+ +    V    +IHG CK   ++ A+++L+ +      PD   Y +  +     G +
Sbjct: 207 -ESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRI 265

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  V+    ++ G+      Y   I G     ++ +A  L + +++     +    NAL
Sbjct: 266 EEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNAL 325

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G       + A++    MI+KG   T+ T + L   + K    D    +   + ++ Y
Sbjct: 326 IDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGY 385

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  Y   +   CT G ++EA  ++  M  +G+ PD   Y  +++A     LL PA  
Sbjct: 386 QPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFD 445

Query: 457 LWDQMFASGCSGNLKTYNILISK-----------------------FSEVGEI------E 487
           +  +MF +GC  +  TY+ LI                         F++V ++      E
Sbjct: 446 VLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFE 505

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            AL LF  MLE G +P+  TY  L+ GLC+   L  A ++F+      V  + +I ++ +
Sbjct: 506 TALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLL 565

Query: 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
              C  G +  A +L+  +         H+ LL+SL
Sbjct: 566 NCCCELGIYGDAVRLVGAMM-----EHGHLPLLESL 596



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 182/439 (41%), Gaps = 7/439 (1%)

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
           +L+  +N+  SV   +       +   Y  +I  L +     +  ++F +++   +D  P
Sbjct: 15  NLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMRE--DDCYP 72

Query: 155 EICNSLLAVLA--SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
            +    + V A    G    A+ +F EM  RG E +   + V I   C+  KL +   +L
Sbjct: 73  TVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRIL 132

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           DE+   E  ++        +I G+CK   VE A ++LD +    C P+   Y  +   F 
Sbjct: 133 DEMV--EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC 190

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
              +V     +L K  +  + P    Y   I G      +  A  L  ++       D  
Sbjct: 191 RKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQW 250

Query: 333 VLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             +  I ++        A V FN + EKG        + L    CK  K D+   +   +
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
              D   +  +YN ++  LC   +++EA  +++ M +KGL   V  Y  L+ A  +E   
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A ++ DQM +SG   ++  Y   I  F   G I+ A  +   M E+GV PDA TYT +
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++       L  AF+V  +
Sbjct: 431 IDAYGGLGLLNPAFDVLKR 449



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 35/257 (13%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D  SA   FN M +KG      + +NL   LC+  + DE + ++K +  +D +  + +Y 
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPD------------------------------ 434
           V+V  L  SGR  EA  +  EM+ +G +P+                              
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 435 -----VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
                V  YN+L++  C+E ++  A+++ D M ++ C+ N +TYN LI  F     +  A
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           + L   MLE  + P   TY SL+ G C+   L +A+ + N    + V+  +   S F+ +
Sbjct: 199 MALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258

Query: 550 LCRRGHFLVATKLLRGL 566
           LC++G    A  L   L
Sbjct: 259 LCKKGRIEEANVLFNSL 275



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/539 (20%), Positives = 214/539 (39%), Gaps = 44/539 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A   FN   ++     + +SY +++  L    +++   ++ K+++ +        Y  I+
Sbjct: 23  AFSVFNMMPKK-GCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIV 81

Query: 127 PSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHR 183
            +L +     +A ++F+E++   CE   P I     ++  +  +  ++   ++ DEM  +
Sbjct: 82  HALFESGRRMEAINLFSEMRERGCE---PNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+  S   +   I  +C+   +     +LD +    NS          +I GFC+ K V 
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHS--NSCNPNERTYNELICGFCRKKNVH 196

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            A  +L ++      P  + Y  +      +G +     +L    + GV P    Y  FI
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFI 256

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
             L  + RI EA  L   +       ++ +  ALI G   +     A    + M+ +  +
Sbjct: 257 DTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCL 316

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P  ST + L   LCK  K  E + + + +        + +Y +++  +   G    A+ +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + +M   G  PDV  Y + + A C    ++ A+ +   MF  G   +  TY ++I  +  
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE------------------------ 518
           +G +  A  +   M + G  P   TY+ L++ L +E                        
Sbjct: 437 LGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVA 496

Query: 519 -----TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLS 567
                   + A E+F K + H      +  +  +I LC+ G   VA KL      RG+S
Sbjct: 497 DVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVS 555



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 201/504 (39%), Gaps = 85/504 (16%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++        + A   +L  +  N    +   Y  +I    + KN  +A ++ +++
Sbjct: 146 TYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKM 205

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
             +   + P +   NSL+      GY+D+A ++ + M+  GV      + VFI   C+  
Sbjct: 206 LES--RLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKG 263

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           ++ +   + + ++  E  +    VI   +I G+CK  ++++A  +LD +   +C P+   
Sbjct: 264 RIEEANVLFNSLK--EKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSST 321

Query: 264 Y----------RIVAEEFKLMGSVFEREV-------------------------VLKKKR 288
           Y          R V E   LM S+ ++ +                         +L +  
Sbjct: 322 YNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMV 381

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI----GSVSSI 344
             G  P    Y  FI        I EA+++  ++   +  + D +   L+    G +  +
Sbjct: 382 SSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFE-RGVMPDALTYTLVIDAYGGLGLL 440

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND-----YFTD 399
           +P  A      M + G  P+  T S L K+L K    +EL + YK ++  D     +F D
Sbjct: 441 NP--AFDVLKRMFDTGCDPSHHTYSCLIKHLLK----EELTKKYKNVALCDSIPNVFFAD 494

Query: 400 ----------------------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                                       + +Y  ++  LC  GRL  A  +   M  +G+
Sbjct: 495 VADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P  + YNSL+  CC   +   A +L   M   G    L++ N+L     E G  E A  
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKV 614

Query: 492 LFHNMLEKGVAPDATTYTSLLEGL 515
           +F N+L+ G   D   +  L++GL
Sbjct: 615 VFSNLLQCGYNDDEVAWKILIDGL 638



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/504 (18%), Positives = 191/504 (37%), Gaps = 51/504 (10%)

Query: 12  RISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFF 71
           R    +I    R +   +   LL + L        L+PS    V+    L H    +G+ 
Sbjct: 180 RTYNELICGFCRKKNVHRAMALLSKMLES-----RLTPS----VVTYNSLIHGQCKIGYL 230

Query: 72  NWASQQPNFTH------SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           + A +  N  +         +Y   + +L    +I   + +   +K   I  +  +Y  +
Sbjct: 231 DSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTAL 290

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHR 183
           I    +      A S+ +  +   ED  P     N+L+  L  +  +  AL + + M  +
Sbjct: 291 IDGYCKAGKMDDANSLLD--RMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQK 348

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G++ +   + + I    +         +LD++    +       I    IH FC    ++
Sbjct: 349 GLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVS--SGYQPDVYIYTAFIHAFCTRGNIK 406

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA  ++  +  R   PD + Y +V + +  +G +     VLK+    G  P  + Y   I
Sbjct: 407 EAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLI 466

Query: 304 LGLIVER--------RICEA------KELGEVIVSGKFTIDDDVLNALI--GSVSSIDPR 347
             L+ E          +C++       ++ +V    KF    ++   ++  G   +I+  
Sbjct: 467 KHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTY 526

Query: 348 SAIV--------------FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           + ++               F+ M E+G  P+ +  ++L    C+     + V +   +  
Sbjct: 527 AKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMME 586

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           + +   +ES NV+   L   G   +A  V   + + G + D   +  L++   +  L   
Sbjct: 587 HGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDG 646

Query: 454 AKKLWDQMFASGCSGNLKTYNILI 477
             +L   M A GC  + +TY +LI
Sbjct: 647 CSELLGVMEARGCQIHPQTYRMLI 670


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 133/561 (23%), Positives = 230/561 (40%), Gaps = 61/561 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ-VKVNKITLDSSVYRFI 125
           +LGFF + S+Q NF  +  SY  ++  LS  R  +   + L Q V + K     +V   I
Sbjct: 85  SLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNV---I 141

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
              L+          V+ E  F+     P + + +L V    G   NAL +FD M   G 
Sbjct: 142 WDELV---------GVYREFAFS-----PTVFDMILKVYVEKGLTKNALYVFDNMGKCGR 187

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
             S       +    +N +      +  ++ +    ++    +  ++++ FCK  +V+EA
Sbjct: 188 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRV--GIVPDVFMVSIMVNAFCKDGKVDEA 245

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              + ++     +P+ + Y  +   +  +G V   + VLK   + GV+     Y   I G
Sbjct: 246 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 305

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
              + ++ EA++                                 V      E   VP  
Sbjct: 306 YCKQCKMDEAEK---------------------------------VLRGMQEEAALVPDE 332

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                L    C+  K D+ V +   +      T++   N +++  C  G + EA GVI  
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M    L PD   YN+L++  CRE     A  L D+M   G    + TYN L+     VG 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + AL+++H M+++GVAPD   Y++LL+GL +  N + A  ++   +      +R   +T
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQES 602
            +  LC+ G  + A ++   +  DLG S    ++  L+     A  V  A + +K   E 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMER 570

Query: 603 SPTMLQEISAELFASLSSSSY 623
            P      S E++ SL S  +
Sbjct: 571 EPI---SPSIEMYNSLISGLF 588



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 118/523 (22%), Positives = 226/523 (43%), Gaps = 82/523 (15%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +S++       +I+  + V+ ++    +  DS  Y  ++    +  +T +AF++ +  K 
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KM 428

Query: 148 NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             E I P +   N+LL  L   G  D+AL+++  M  RGV    +G+   +    +    
Sbjct: 429 LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENF 488

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               ++  ++  R        +    +I G CK  ++ EA ++ D+++   C PD I YR
Sbjct: 489 EGASTLWKDILAR--GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 266 I----------VAEEFKLMGSVFEREVV-------------LKKKRKL------------ 290
                      V + FK+ G++ ERE +             L K R+L            
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAM-EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGI 605

Query: 291 -GVAPRTNDYREFILGLIVERRICEAK----ELGEVIVSGKFTIDDDVLNALIGSVSSID 345
            G+ P    Y   I G   E  + +A     E+ E  +S    I   +++ L   +  ID
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY-RLGRID 664

Query: 346 PRSAIVFFNFMIEKGRVP---------------------------TLSTLSNLSKN---- 374
              A +    M++ G  P                           T    +N+  N    
Sbjct: 665 --EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 722

Query: 375 -LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  K D+    + +LS   +  D  +Y  ++     +G + EA+ +  EM R+GL P
Sbjct: 723 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVP 782

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           ++  YN+L+   C+ + +  A++L+ ++   G   N+ TYN LI  + ++G ++ A +L 
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 842

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             M+E+G++P   TY++L+ GLC+  +++ + ++ N+ +   V
Sbjct: 843 DKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 182/420 (43%), Gaps = 10/420 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +++++++  L    ++   + +  ++K    + D   YR +I    +  N  +AF
Sbjct: 503 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 562

Query: 140 SVFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            V   ++   E I P  E+ NSL++ L     +     +  EM  RG+  + + +G  I 
Sbjct: 563 KVKGAMER--EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALID 620

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            +C+   L +  S   E+   EN +    +I   ++ G  +  R++EA  ++ ++     
Sbjct: 621 GWCKEGMLDKAFSSYFEMT--ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 678

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD   +      +  +  + +    L +  K  + P    Y   I GL    ++ +A+ 
Sbjct: 679 FPDHECFLKSDIRYAAIQKIADS---LDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARR 735

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
              ++    F  D+     LI G  ++ +   A    + M+ +G VP + T + L   LC
Sbjct: 736 FFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLC 795

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K    D    ++  L     F ++ +YN ++   C  G +  A+ +  +M  +G+ P V 
Sbjct: 796 KSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVV 855

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y++L+   C+   +  + KL +QM  +G    L  Y  L+  +   GE++   +L+  M
Sbjct: 856 TYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMM 915


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 177/374 (47%), Gaps = 3/374 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L  +G + +A+ + D M   G + + + +G  +   C++ +    + +L ++ +
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE 240

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R+  +   +V   +II G CK   ++ AF + +E+ I+  K D I Y  +   F   G  
Sbjct: 241 RKIKL--DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +L+   K  + P    +   I   + E ++ EA+EL + ++    + D     +L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A    + M+ KG  P + T + L    CK N  D+ +E+++ +S    
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +YN ++   C  G+L  A  + QEM  + + PD+  Y  L++  C       A +
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +++++  S    ++  YNI+I       +++ A  LF ++  KGV PD  TY  ++ GLC
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC 538

Query: 517 QETNLQAAFEVFNK 530
           ++ +L  A  +F K
Sbjct: 539 KKGSLSEADLLFRK 552



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 173/380 (45%), Gaps = 7/380 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L +V+A     D  L +  +M  +G+  +     + I   C   KL    S + ++ K  
Sbjct: 78  LFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLG 137

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                 +V    +I+G C   RV EA +++D +     KP  I    +     L G V +
Sbjct: 138 YE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSD 195

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +++ +  + G  P    Y   +  +    +   A EL   +   K  +D    + +I 
Sbjct: 196 AVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255

Query: 340 SV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
            +    S+D  +A   FN M  KG    +   + L +  C   + D+  ++ + +     
Sbjct: 256 GLCKDGSLD--NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +++ ++      G+LREA  + +EM ++G+ PD   Y SL++  C+E+ L  A  
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + D M + GC  N++T+NILI+ + +   I+  L LF  M  +GV  D  TY +L++G C
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 517 QETNLQAAFEVFNKSVNHDV 536
           +   L+ A E+F + V+  V
Sbjct: 434 ELGKLEVAKELFQEMVSRRV 453



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 171/371 (46%), Gaps = 13/371 (3%)

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           NEV +     GP     +L V+   G    A+++  +M  R ++   + + + I   C++
Sbjct: 211 NEVTY-----GP-----VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKD 260

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L    ++ +E+  +        +I   +I GFC   R ++  K+L ++  R+  PD +
Sbjct: 261 GSLDNAFNLFNEMEIK--GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           A+  + + F   G + E E + K+  + G++P T  Y   I G   E ++ +A  + +++
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           VS     +    N LI G   +      +  F  M  +G V    T + L +  C+  K 
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +   E+++ + +     D+ SY +++  LC +G   +A  + +++++  ++ D+  YN +
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C    +  A  L+  +   G   ++KTYNI+I    + G +  A  LF  M E G 
Sbjct: 499 IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558

Query: 502 APDATTYTSLL 512
           +P+  TY  L+
Sbjct: 559 SPNGCTYNILI 569



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 206/475 (43%), Gaps = 47/475 (9%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV 110
           L  +V +  LL    +  GF      QPN     ++Y  +LK +  S Q      +L+++
Sbjct: 189 LNGKVSDAVLLIDRMVETGF------QPN----EVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           +  KI LD+  Y  II  L +  +   AF++FNE++         I  +L+      G  
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+  K+  +M  R +    + F   I  F +  KL +   +  E+ +R  S    +V   
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS--PDTVTYT 356

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I GFCK  ++++A  +LD +  + C P+   + I+   +     + +   + +K    
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           GV   T  Y   I G     ++  AKEL + +VS +                    R  I
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV-------------------RPDI 457

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           V +  +++                LC   + ++ +E+++ +  +    D+  YN+++  +
Sbjct: 458 VSYKILLD---------------GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + ++ +A+ +   +  KG+ PDV  YN ++   C++  L  A  L+ +M   G S N 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            TYNILI      G+   + +L   +   G + DA+T   +++ L  +  L+ +F
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML-SDGRLKKSF 616



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 5/236 (2%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    A+  F  M      P L   S L   + +  + D ++++ K +       +
Sbjct: 47  GIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHN 106

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + ++M++  C   +L  A+  + ++ + G +PD   +++L+   C E  +  A +L D
Sbjct: 107 LYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD 166

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M   G    L T N L++     G++  A+ L   M+E G  P+  TY  +L+ +C+  
Sbjct: 167 RMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSG 226

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
               A E+  K     + L     S  +  LC+ G    A  L     ++G  +D+
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282


>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 730

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 237/524 (45%), Gaps = 51/524 (9%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  ++W P +   L +L     + P+LVA V+  +      LAL FF+WA +Q  F H  
Sbjct: 106 RRHQRWGPPVIADLSKL---RRVPPTLVAEVLCAHPPPPPPLALPFFHWAGRQKGFRHCF 162

Query: 85  LSYHSILKSLSLSRQINAIDSVL-------KQVKVNKITLDSSVY---RFIIPSLIQGKN 134
            ++H++   LS +    A D +        K V   ++TL   ++   R  + +L   + 
Sbjct: 163 PAFHALACLLSAAGLPAAADQLPDLIRSHGKPVSHPQLTLLVRLHTAARRPLRALYTLRR 222

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            +  FSV  +V          +CN +L  L + GY+++ALK+FDEM+  G+    + F +
Sbjct: 223 FRHEFSVQPQV---------HVCNRVLGALTAAGYVEDALKLFDEMAESGIRPMPVSFAI 273

Query: 195 FIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            +    +  K  ++L M+  +R    R +  +  +++  ++  G  +G       +V +E
Sbjct: 274 IVRALGQEGKPERILEMIGRMRDEVCRPDVFVYTTLVKTMVRRGHMEG-----CIRVWEE 328

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +     +PD +AY  + E     G V +   + +  RK G+      Y   + G +   R
Sbjct: 329 MGRDGVEPDSMAYATMVEGLCNAGMVEKAAKLFEGMRKKGLLVDRIVYASLVHGYVAAGR 388

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSN 370
           + +   + + +V   +  D    N LIG +  I     A   F  ++++  VP+  T+S 
Sbjct: 389 VGDGCRVLKDMVDAGYRADLKTYNILIGGLCGIGLEDKAHKMFQIVLQEDLVPSAETVSQ 448

Query: 371 LSKNLCKRNKS---------DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           L   +C  +           D+LVE+   L A ++  D      +  F    GR  +A  
Sbjct: 449 LL--VCYADNGDMVNFFGLVDKLVEL--SLPAVEFLVDF-----LRLFASKDGRELKAVE 499

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKF 480
           V + +++KG    V+FYN L+E   +      A  L+++M  S  C     TY+++I  F
Sbjct: 500 VFKTLRQKGYC-SVNFYNILIENLLKIKEREKALLLFEEMKDSDDCEPESCTYSLMIPCF 558

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            + G IE A   +++M++    P  + Y SL++GLC+   + AA
Sbjct: 559 VDEGNIEEACSCYNSMMKAEWIPSLSAYRSLVKGLCKIGEINAA 602



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 3/233 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P +   + L K + +R   +  + V++ +  +    D  +Y  MV  LC +G + +A  +
Sbjct: 301 PDVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVEKAAKL 360

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            + M++KGL  D   Y SL+        +    ++   M  +G   +LKTYNILI     
Sbjct: 361 FEGMRKKGLLVDRIVYASLVHGYVAAGRVGDGCRVLKDMVDAGYRADLKTYNILIGGLCG 420

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +G  + A ++F  +L++ + P A T + LL       ++   F + +K V   +     +
Sbjct: 421 IGLEDKAHKMFQIVLQEDLVPSAETVSQLLVCYADNGDMVNFFGLVDKLVELSLPAVEFL 480

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHS--DSHVILLKSLADAREVEMAI 593
           +    +   + G  L A ++ + L    G+   + + IL+++L   +E E A+
Sbjct: 481 VDFLRLFASKDGRELKAVEVFKTLRQK-GYCSVNFYNILIENLLKIKEREKAL 532



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 67/144 (46%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++  L  +G + +A  +  EM   G+ P    +  ++ A  +E       ++  +M  
Sbjct: 237 NRVLGALTAAGYVEDALKLFDEMAESGIRPMPVSFAIIVRALGQEGKPERILEMIGRMRD 296

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
             C  ++  Y  L+      G +EG +R++  M   GV PD+  Y +++EGLC    ++ 
Sbjct: 297 EVCRPDVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVEK 356

Query: 524 AFEVFNKSVNHDVMLARSILSTFM 547
           A ++F       +++ R + ++ +
Sbjct: 357 AAKLFEGMRKKGLLVDRIVYASLV 380



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 64/151 (42%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           LR  Y + +      + P V   N ++ A      +  A KL+D+M  SG      ++ I
Sbjct: 214 LRALYTLRRFRHEFSVQPQVHVCNRVLGALTAAGYVEDALKLFDEMAESGIRPMPVSFAI 273

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           ++    + G+ E  L +   M ++   PD   YT+L++ + +  +++    V+ +     
Sbjct: 274 IVRALGQEGKPERILEMIGRMRDEVCRPDVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDG 333

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           V       +T +  LC  G    A KL  G+
Sbjct: 334 VEPDSMAYATMVEGLCNAGMVEKAAKLFEGM 364


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/511 (22%), Positives = 225/511 (44%), Gaps = 49/511 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A GF +W  ++  F     SY +++  L+ + +++    +  ++    +  D + Y  +I
Sbjct: 168 ARGFLDWMWKE-GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILI 226

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG 184
              ++ K+ + A  +++ +      + P +   N +++ L+  G +D+ LK+++ M    
Sbjct: 227 DGFLKEKDHKTAMELWDRL-LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNE 285

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            E     +   I   C+   + +  S+ +E+ +R+ S+    V    ++ GFC+  +++E
Sbjct: 286 REKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASI--DVVTYNTMLGGFCRCGKIKE 343

Query: 245 AFKVLDELRIRECKP--DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           +   L+  RI E K   + ++Y I+ +     G + E  ++ +     G A     Y  F
Sbjct: 344 S---LELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIF 400

Query: 303 ILGLIV-----------------------------------ERRICEAKELGEVIVSGKF 327
           I GL V                                   ++R+ EA  L + +     
Sbjct: 401 IHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGV 460

Query: 328 TIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            ++  V NALIG +   D R   A  F   M + G  PT+ + + L   LCK  K  E  
Sbjct: 461 ELNSHVCNALIGGLIR-DSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEAS 519

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
              K +  N +  D+++Y++++  LC   ++  A  +  +  + GL+ DV  +N L+   
Sbjct: 520 AFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGL 579

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    L  A  +   M    C+ NL TYN L+  F +VG+   A  ++  M + G+ PD 
Sbjct: 580 CSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDI 639

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
            +Y ++++GLC    +  A E F+ + NH +
Sbjct: 640 ISYNTIMKGLCMCRGVSYAMEFFDDARNHGI 670



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/578 (22%), Positives = 230/578 (39%), Gaps = 98/578 (16%)

Query: 46  SLSPSLVARVI----NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           SLSP  V +++    NP        A   F+ A++ P + HS + YH IL+ LS +R +N
Sbjct: 7   SLSPKHVLKLLKSEKNP------RAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVN 60

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEI--C 157
            +  +++ ++  +   D  V   +I +  +     +A  VF  ++  F CE   P I   
Sbjct: 61  HVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCE---PAIRSY 117

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL              +F      GV  +   + V I   C+  +  +    LD + K
Sbjct: 118 NTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWK 177

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF----- 271
                    V +   +I+   K  ++++A ++ DE+  R   PD   Y I+ + F     
Sbjct: 178 EG---FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKD 234

Query: 272 -----KLMGSVFEREVV-----------------------LKKKRKLGVAPRTND---YR 300
                +L   + E   V                       LK   ++    R  D   Y 
Sbjct: 235 HKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYS 294

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEK 359
             I GL     + +A+ +   +   K +ID    N ++G        + ++  +  M  K
Sbjct: 295 SLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHK 354

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
             V  +S  + L K L +  K DE   +++++ A  Y  D  +Y + +  LC +G + +A
Sbjct: 355 NSVNIVS-YNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKA 413

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL---------------------- 457
            GV+QE++  G   DV  Y S+++  C++  L  A  L                      
Sbjct: 414 LGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGG 473

Query: 458 -------------WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
                          +M  +GC   + +YNILI    + G+   A      MLE G  PD
Sbjct: 474 LIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPD 533

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVML 538
             TY+ LL GLC++  +  A E++++     +  DVM+
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMM 571



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 188/438 (42%), Gaps = 21/438 (4%)

Query: 88  HSILKS-LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H+I+ S LS   +++    + +++K N+   D   Y  +I  L    N  KA SVFNE+ 
Sbjct: 258 HNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELD 317

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                I     N++L      G I  +L+++  M H+    + + + + I    EN K+ 
Sbjct: 318 ERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKID 376

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +  +M+  +   +    + +   + I HG C    V +A  V+ E+       D  AY  
Sbjct: 377 EA-TMIWRLMPAKGYAADKTTYGIFI-HGLCVNGYVNKALGVMQEVESSGGHLDVYAYAS 434

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGE-- 320
           + +       + E   ++K+  K GV   ++     I GLI + R+ EA    +E+G+  
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNG 494

Query: 321 ---VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
               +VS    I         G  S+        F   M+E G  P L T S L   LC+
Sbjct: 495 CRPTVVSYNILICGLCKAGKFGEASA--------FVKEMLENGWKPDLKTYSILLCGLCR 546

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             K D  +E++     +   TD+  +N+++  LC+ G+L +A  V+  M+ +    ++  
Sbjct: 547 DRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVT 606

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN+LME   +      A  +W  M+  G   ++ +YN ++        +  A+  F +  
Sbjct: 607 YNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDAR 666

Query: 498 EKGVAPDATTYTSLLEGL 515
             G+ P   T+  L+  +
Sbjct: 667 NHGIFPTVYTWNILVRAV 684



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           + +LNA + +   +   S   +F      G  P L T + L K  CK+ + ++       
Sbjct: 118 NTLLNAFVEAKQWVKVESLFAYFE---TAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDW 174

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +    +  D+ SY+ +++ L  +G+L +A  +  EM  +G+ PDV+ YN L++   +E  
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKD 234

Query: 451 LRPAKKLWDQMFA-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            + A +LWD++   S    N+KT+NI+IS  S+ G ++  L+++  M +     D  TY+
Sbjct: 235 HKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYS 294

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           SL+ GLC   N+  A  VFN+       +     +T +   CR G    + +L R +   
Sbjct: 295 SLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIME-- 352

Query: 570 LGHSD-----SHVILLKSLADAREVEMA 592
             H +     S+ IL+K L +  +++ A
Sbjct: 353 --HKNSVNIVSYNILIKGLLENGKIDEA 378



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + SYN +++    + +  +   +    +  G+ P++  YN L++  C++     A+   D
Sbjct: 114 IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLD 173

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M+  G   ++ +Y+ +I+  ++ G+++ AL LF  M E+GVAPD T Y  L++G  +E 
Sbjct: 174 WMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEK 233

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSD--SH 576
           + + A E++++ +    +         MIS L + G      K+   +  +    D  ++
Sbjct: 234 DHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTY 293

Query: 577 VILLKSLADAREVEMA 592
             L+  L DA  V+ A
Sbjct: 294 SSLIHGLCDAGNVDKA 309


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/497 (23%), Positives = 206/497 (41%), Gaps = 59/497 (11%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           E  N +L V    G    A K+FD M+  GV     GFG  +   C   K+ +V ++L  
Sbjct: 39  ETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAA 98

Query: 215 VRKRENSMINGSVIAVL---------------------------------IIHGFCKGKR 241
           + +   S+ N +   V+                                  I G CK + 
Sbjct: 99  MWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRY 158

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER--EVVLKKKRKLGVAPRTNDY 299
           V++AF VL+E+  R  KP+   +  + +    +G   ER   + LK  +     P  + Y
Sbjct: 159 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT-ERAFRLFLKLIKSSSYKPNVHTY 217

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFM 356
              I G   E ++  A+ L   +V      + +    LIG      S D   A    N M
Sbjct: 218 TVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFD--RAFELMNKM 275

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            ++G +P + T + +    CK+ K  E  +V ++ ++     D  +Y ++++  C  G +
Sbjct: 276 KQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 335

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A  +   M   G  PD+  Y SL+   C++  +  ++K +D+    G     +TY  +
Sbjct: 336 TYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 395

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+ + +VG    ALR+F  M++ G   D+ TY +L+ GLC+E+ L+ A  ++   ++  +
Sbjct: 396 IAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRL 455

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLS---------------SDLGHSDSHVILLK 581
           +       T     CRR    +A  +L  L                S LG  D+  + LK
Sbjct: 456 VPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHTVDVVVRKLSALGDVDAASLFLK 515

Query: 582 SLADAREVEMAIEHIKW 598
            + D    + A++H  +
Sbjct: 516 KVLDE---DYAVDHATY 529



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 171/406 (42%), Gaps = 12/406 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y   I  L + +  ++AF V  E+      + P +    +L+  L   G+ + A ++F +
Sbjct: 146 YTAWIDGLCKRRYVKQAFHVLEEMVGR--GLKPNVYTHTTLIDGLCKIGWTERAFRLFLK 203

Query: 180 M-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           +      + +   + V I  +C   KL +   +L  VR  E  +   +     +I G CK
Sbjct: 204 LIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLL--VRMVEQGLKPNTNTYTTLIGGHCK 261

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           G   + AF+++++++     P+   Y  V + F   G + E   VL+     G+      
Sbjct: 262 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 321

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMI 357
           Y   I     +  I  A +L + +V      D +   +LI +         +  FF+  +
Sbjct: 322 YTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCL 381

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G +PT  T +++    CK  +S   + V++ +  N  F D  +Y  ++S LC   RL 
Sbjct: 382 MIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLE 441

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  + + M  K L P      +L    CR +    A  + D++        + T ++++
Sbjct: 442 EAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVVV 498

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            K S +G+++ A      +L++  A D  TYT  +   C E N  A
Sbjct: 499 RKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINS-CYENNRYA 543



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           +E+ N ++     +G    A  V   M R G+ P    + +L+  CCRE  +     L  
Sbjct: 38  VETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVDALLA 97

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M+  G S +  T  +++    E G  +     F  MLE G  P+   YT+ ++GLC+  
Sbjct: 98  AMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRR 157

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            ++ AF V  + V   +       +T +  LC+ G
Sbjct: 158 YVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIG 192


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 185/420 (44%), Gaps = 29/420 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L  +LA     D  L +  +M  +G+ +      + I  FC   KLG   S + ++ K
Sbjct: 94  NRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFK 153

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                   +V    +++G C   RV EA +++D + + +  PD I    +     L   V
Sbjct: 154 LGYE--PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRV 211

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVER--------------RICEAKELGEVIV 323
            E   ++ +    G  P      +F  G I+ R              R  E +++   +V
Sbjct: 212 SEAVDLIARMMANGCQPN-----QFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVV 266

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
           +    ID+   +  +          A+ FF+ M  KG    + T ++L  + C   + D+
Sbjct: 267 TYTIIIDNLCKDGRLDD--------ALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDD 318

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             ++ + +       ++ +++ ++  L   G+L EA  +  EM  +G++P+   YNSL+ 
Sbjct: 319 GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIY 378

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C +  L  A ++ D M + GC  ++ TYNILI+ F +  +++  +RLF  M  +G+  
Sbjct: 379 GLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIA 438

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  TY++L++G CQ   L  A +VF + V+  V       +  +  LC  G    A  +L
Sbjct: 439 DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGIL 498



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 167/376 (44%), Gaps = 7/376 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++  L     +  A+ +   M   G + +   +G  + + C   K G   S LD +RK
Sbjct: 199 NTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMC---KSGNTASALDLLRK 255

Query: 218 RENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E+  I   V+   +II   CK  R+++A     E+  +  K +   Y  +   F   G 
Sbjct: 256 MEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L+      + P    +   I  L+ E ++ EAK+L   +++     +    N+
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375

Query: 337 LIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           LI  + + D R   A    + M+ KG  P + T + L    CK  + D+ + +++ +S  
Sbjct: 376 LIYGLCN-DKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR 434

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  +Y+ ++   C S +L  A  V QEM  +G+ P +  Y  L++  C    L  A
Sbjct: 435 GMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA 494

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + DQM       ++  YNI+I       +++ A  LF ++  KGV  D  +Y  +L G
Sbjct: 495 LGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSG 554

Query: 515 LCQETNLQAAFEVFNK 530
           LC+ ++L  A  +F K
Sbjct: 555 LCKRSSLSEADALFRK 570



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 202/455 (44%), Gaps = 19/455 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSL-SRQINAID----SVLKQVKVNKITLDSSV 121
           A+G       +PN     ++++++L  L L  R   A++     VL Q   + ITL++ V
Sbjct: 147 AMGKIFKLGYEPN----TVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIV 202

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
               +   +       A  + N  + N    GP     +L  +   G   +AL +  +M 
Sbjct: 203 NGLCLKDRVSEAVDLIARMMANGCQPNQFTYGP-----ILNRMCKSGNTASALDLLRKME 257

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGK 240
           HR ++   + + + I   C++ +L   LS   E+   E   I  +V     +I  FC   
Sbjct: 258 HRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEM---ETKGIKANVFTYNSLIGSFCSFG 314

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R ++  ++L ++  R+  P+ + +  + +     G + E + +  +    G+ P T  Y 
Sbjct: 315 RWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYN 374

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I GL  ++R+ EA ++ +++VS     D    N LI G   +      +  F  M  +
Sbjct: 375 SLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR 434

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +    T S L +  C+  K     +V++ + +      + +Y +++  LC +G L EA
Sbjct: 435 GMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA 494

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
            G++ +M +  ++ D+  YN ++   C  + +  A  L+  + + G   ++++YNI++S 
Sbjct: 495 LGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSG 554

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             +   +  A  LF  M E G  PD  TY +L+  
Sbjct: 555 LCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRA 589



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 23/428 (5%)

Query: 77  QPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN FT+ P     IL  +  S    +   +L++++  KI      Y  II +L +    
Sbjct: 227 QPNQFTYGP-----ILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRL 281

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             A S F+E++           NSL+    S G  D+  ++  +M  R +  + + F   
Sbjct: 282 DDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSAL 341

Query: 196 IWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           I    +  KL +   + +E+  R    N++   S     +I+G C  KR++EA +++D +
Sbjct: 342 IDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS-----LIYGLCNDKRLDEANQMMDLM 396

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             + C PD   Y I+   F     V +   + +K    G+   T  Y   I G    R++
Sbjct: 397 VSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKL 456

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
             AK++ + +VS    +   ++   I   G   + +   A+   + M +      +   +
Sbjct: 457 IVAKKVFQEMVSQG--VHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYN 514

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            +   +C  NK D+   ++  L +     D++SYN+M+S LC    L EA  + ++MK  
Sbjct: 515 IIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED 574

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G +PD   YN+L+ A  R + +  + +L ++M   G S +  T  I++   S  GE++ +
Sbjct: 575 GYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSS-GELDKS 633

Query: 490 LRLFHNML 497
              F NML
Sbjct: 634 ---FLNML 638



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 43/262 (16%)

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           I    A+  F  M+    +PT+   + L   L +  + D ++ + K +       D+ + 
Sbjct: 69  IKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTL 128

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE--------------- 448
           N+M++  C   +L  A+  + ++ + G +P+   +N+L+   C E               
Sbjct: 129 NIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVL 188

Query: 449 --------------------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
                               D +  A  L  +M A+GC  N  TY  ++++  + G    
Sbjct: 189 SQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTAS 248

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILS 544
           AL L   M  + + P   TYT +++ LC++  L  A   F+    K +  +V    S++ 
Sbjct: 249 ALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIG 308

Query: 545 TFMISLCRRGHFLVATKLLRGL 566
           +F    C  G +    +LLR +
Sbjct: 309 SF----CSFGRWDDGAQLLRDM 326


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 218/510 (42%), Gaps = 9/510 (1%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  +  L LR SL PS V  V+         +AL FF WA +Q  + H P+ Y+S
Sbjct: 160 WNPKHEGQMRNL-LR-SLKPSQVCAVLRSQ--DDERVALKFFYWADRQWRYRHDPMVYYS 215

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL  +K   I      +  ++ S  +    + A  V   ++   
Sbjct: 216 MLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAG 275

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + V      ++ AL+  + M   G+  + + +   I  +C+  ++ + +
Sbjct: 276 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 335

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVA 268
            +LD++  +    +   V    I+   CK KR+ E   ++ ++ +      D + Y  + 
Sbjct: 336 ELLDDMPSK--GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLI 393

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
                     E    LK   + G       Y   +  L  E R+ EAK+L  E++  G  
Sbjct: 394 HMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHC 453

Query: 328 TIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D     A++     + +   A      M   G  P   + + L   LC+  KS E  E
Sbjct: 454 PPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEARE 513

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           +  +     +  +  +Y+V++  L   G+L EA  V++EM  KG  P     N L+++ C
Sbjct: 514 MMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLC 573

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           R+     A+K  ++    GC+ N+  +  +I  F +  E++ AL +  +M       D  
Sbjct: 574 RDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVF 633

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           TYT+L++ L ++  +  A E+  K ++  +
Sbjct: 634 TYTTLVDALGKKGRIAEATELMKKMLHKGI 663



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 175/395 (44%), Gaps = 18/395 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ +L    + D AL    +   +G     +G+   +   C+  ++ +   +++E+  
Sbjct: 390 NTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLS 449

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           + +   +  V    +++GFC+   V++A K+L  +     KP+ ++Y  +       G  
Sbjct: 450 KGHCPPD-VVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKS 508

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +   +P +  Y   + GL  E ++ EA ++   +V   F      +N L
Sbjct: 509 LEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLL 568

Query: 338 IGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           + S+   D R+  A  F    + KG    +   + +    C+ ++ D  + V   +   +
Sbjct: 569 LQSLCR-DGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 627

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLL 451
              D+ +Y  +V  L   GR+ EA  ++++M  KG+DP    Y +++   C+    +DL+
Sbjct: 628 KHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLV 687

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
              +K+   +    C      YN +I K   +G++E A +L   +L      DA T  +L
Sbjct: 688 AILEKM---ILRQKCK---TIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYAL 741

Query: 512 LEGLCQETNLQAAFEV----FNKSVNHDVMLARSI 542
           +EG  +      A++V    FN+++  DV +   +
Sbjct: 742 MEGYLKIGVPLLAYKVACRMFNRNLIPDVKMCEKL 776



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 20/258 (7%)

Query: 325 GKFTIDDDV--------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           G+F +++D         +  LIG  SS +P+      N          L +L        
Sbjct: 133 GRFDVEEDESRHPLVREIGRLIGLRSSWNPKHEGQMRNL---------LRSLKPSQVCAV 183

Query: 377 KRNKSDELVEVYKVLSAND---YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            R++ DE V +     A+    Y  D   Y  M+  L  +   + A  V+  MKR+G+  
Sbjct: 184 LRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYR 243

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
               +  +M +  R   LR A K+   M  +G   NL   N  I  F     +E ALR  
Sbjct: 244 TPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFL 303

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             M   G+ P+  TY  ++ G C    ++ A E+ +   +   +  +    T M  LC+ 
Sbjct: 304 ERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKE 363

Query: 554 GHFLVATKLLRGLSSDLG 571
              +    L++ ++ + G
Sbjct: 364 KRIVEVRDLMKKMAKEHG 381



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/173 (17%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F   P+  + +L+SL    + +     +++       ++   +  +I    Q      A 
Sbjct: 558 FFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAAL 617

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV +++    +        +L+  L   G I  A ++  +M H+G++ + + +   I ++
Sbjct: 618 SVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRY 677

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           C+  K+  ++++L+++  R+        I   +I   C   ++EEA K+L ++
Sbjct: 678 CQMEKVDDLVAILEKMILRQKC----KTIYNQVIEKLCGLGKLEEADKLLGKV 726


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/541 (23%), Positives = 227/541 (41%), Gaps = 34/541 (6%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSP-SLVARVINPYL 60
           T  P+ D     ++   S+ N T            T+ QL  +   S    + +  NP  
Sbjct: 16  TRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSS 75

Query: 61  LTHH--------SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112
           L  H         L L +F W  ++    H+   +  +L  L+ ++  N I ++L     
Sbjct: 76  LLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAK 135

Query: 113 NKITLDSSVYR-----------------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           N    +S+++                   ++ + ++      A   F+        +   
Sbjct: 136 NAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSAL 195

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN +L  L  +G I     ++ EM  R +  + + F V I   C   K+G+     D V
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLC---KVGKFQKAGDVV 252

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
              +    + SVI    II G+CK  ++ +A  +L E+  +   P+ I + I+ + F   
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRD 312

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
            +V   + V ++ ++ G+ P    Y   I GL    ++ EA  L + +       +    
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTY 372

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NALI G       + A    + + ++G  P + T + L     K  + D+   +  ++  
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN ++   C  G ++EA  + +EM+  GL  D+  YN L++A C++   R 
Sbjct: 433 TGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRK 492

Query: 454 AKKLWDQMF---ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           A +L D+M      G   N+ TYN+LI  F   G++E A RL + MLEKG+ P+ TTY  
Sbjct: 493 AVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 552

Query: 511 L 511
           L
Sbjct: 553 L 553



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P++ T + +    CK  K  +   + K + A     +  ++N+++   C    +  A
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V +EM+R+GL P+V  YNSL+   C    L  A  L D+M   G   N+ TYN LI+ 
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +   ++ A  +  ++ ++G+AP+  T+ +L++   +   +  AF + +  ++  V   
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 540 RSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAI 593
            S  +  ++  CR G+   A KL +     GL +DL    ++ IL+ +L    E   A+
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADL---VTYNILVDALCKKGETRKAV 494


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 221/481 (45%), Gaps = 13/481 (2%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE---ICNSL 160
           D+++  V+  K+ ++  V  F++  L++G     A S+F+++K +    GP       S+
Sbjct: 161 DALVTYVEAKKVGVELQVCNFLLKRLVEGNQIMYARSLFDDMKSS----GPSPNVYSYSV 216

Query: 161 LAVLASDG---YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           L  + + G    ++ AL++  EM   GV  +   +  +++  C   ++    + L  + +
Sbjct: 217 LMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQ 276

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R     N    AV  IHGFC   +V +A +V D ++     PD  +Y I+ +     G V
Sbjct: 277 RGYPCNNYCFNAV--IHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDV 334

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L +  + G+ P    Y   + GL    R+  A EL + +    F  D  V + +
Sbjct: 335 LTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV 394

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G    +D       +N M+    VP     S+L    C+  +  E +EV++++ ++  
Sbjct: 395 LHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGI 454

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +  ++V      G + EA+  + ++++ G+ P +  Y  ++   C+ +       
Sbjct: 455 CPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWG 514

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++  M   G   +   Y+I+I  F +  +++ A RL++ M+++G  P+  TYTSL+ GLC
Sbjct: 515 IFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLC 574

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
            +  L     +F   +   +   R + ++ +   C+R +   A ++ R + ++   +DS 
Sbjct: 575 HDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSF 634

Query: 577 V 577
           V
Sbjct: 635 V 635



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/435 (20%), Positives = 199/435 (45%), Gaps = 13/435 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           Q  +  +   +++++       Q++    V   +K      D   Y  ++  L +  +  
Sbjct: 276 QRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVL 335

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
             + +  E+  N   I P + +  SLL  L   G ++ A ++F  +  +G +   I + +
Sbjct: 336 TGYYMLVEMARN--GITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSI 393

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +   C++  L     + +++    ++ +  +     +I+ +C+ ++++EA +V + +  
Sbjct: 394 VLHGCCQHLDLEICYDLWNDMV--HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVS 451

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ +   I+   F   G + E  + L K R+ GV P    YR  I GL    ++ +
Sbjct: 452 DGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLC---KVNK 508

Query: 315 AKELGEVIVS--GKFTIDDDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
             ++  +      +  + D VL ++I  G V ++D + A   +  M+++G  P + T ++
Sbjct: 509 PNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTS 568

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LC  +K  E++ ++K +       D   Y  +++  C    ++ A  + +EM+ +G
Sbjct: 569 LINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEG 628

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L  D   Y  L+    +   +  A+   ++M   G +  + TY  LI  + ++G+ + A+
Sbjct: 629 LSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAM 688

Query: 491 RLFHNMLEKGVAPDA 505
            ++++ML+ G+APDA
Sbjct: 689 AMYNSMLQAGIAPDA 703



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 203/472 (43%), Gaps = 24/472 (5%)

Query: 112 VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EIC-NSLLAVLASDG 168
           V  +  +++ Y   +  L   K  + A+   N ++  C+   P    C N+++     DG
Sbjct: 241 VEGVRPNAATYATYLYGLCHAKQVKSAW---NFLQMLCQRGYPCNNYCFNAVIHGFCHDG 297

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            +  A+++FD M   G       + + +   C+   +     ML E+ +  N +    V 
Sbjct: 298 QVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMAR--NGITPNLVS 355

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV--FEREVVLKK 286
              ++HG C+  RVE AF++   L+ +  K D I Y IV     L G     + E+    
Sbjct: 356 YSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV-----LHGCCQHLDLEICYDL 410

Query: 287 KRKL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
              +      P   +Y   I      R++ EA E+ E++VS     +      L+   S+
Sbjct: 411 WNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSN 470

Query: 344 ID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                 A +F + + + G VP+L T   +   LCK NK +++  ++  +    Y  D   
Sbjct: 471 EGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVL 530

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y++++     +  L+EA+ +  +M  +G  P++  Y SL+   C +D L     L+  M 
Sbjct: 531 YSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G + +   Y  LI+ + +   ++ AL +F  M  +G++ D+  YT L+ G  +   + 
Sbjct: 591 GEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMD 650

Query: 523 AAF----EVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSSD 569
            A     E+ NK +   V+     I+  F I   ++   +  + L  G++ D
Sbjct: 651 GAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPD 702


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 218/464 (46%), Gaps = 27/464 (5%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +SP  ++Y++++K L +  +I+    +  +++    T D   Y  +I  L    N   A 
Sbjct: 135 YSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIAL 194

Query: 140 SVFNEV-------KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
            +  E+       + NC+   P +   N ++  L   G  D A ++F+EM  +G+  S I
Sbjct: 195 KLHQEMLNDISRYEINCK---PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSII 251

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
            +   I  FC   K  +   +LDE+  +  +  M+  +V+    I   CK  +V EA K+
Sbjct: 252 SYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL----IDTLCKEGKVIEAKKL 307

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFE-REVVLKKKRKLGVAPRTNDYREFILGLI 307
           L  +      PD + Y  + E F ++G +   RE+ +    K G  P    Y   I G  
Sbjct: 308 LGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSK-GCEPDVISYNVLINGYS 366

Query: 308 VERRICEAKEL-GEVIVSGK--FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
              ++ EA +L  E+++ GK    I  D L   I     +D   A   F+ M   G    
Sbjct: 367 KTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVD--DAKKLFSVMKAHGIAEN 424

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
             T       LCK +   E ++++  L ++++  ++E+ N ++  LC +G+L  A+ + +
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           ++  +G +P+V  Y  ++   CRE  +  A  L  +M A+GC+ ++ TYN L+  F E  
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESN 544

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++E  ++L H M +K V+PDA T + +++ L ++   Q    + 
Sbjct: 545 KLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 588



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 218/512 (42%), Gaps = 45/512 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL FF+   +    T S  S++ +L  L+  +  + + S+  Q++++ ++ D      ++
Sbjct: 53  ALHFFHLMMRSTP-TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILL 111

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
             L      ++ F+ F  +        P I   N+L+  L  +  I  A ++F  M   G
Sbjct: 112 NCLCNVNRLREGFAAFAGILR--RGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG 169

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLS----MLDEVRKRE----------NSMING----- 225
                + +G  I   C    +   L     ML+++ + E          N +++G     
Sbjct: 170 CTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229

Query: 226 -------------------SVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                              S+I+   +IHGFC   + EE+ ++LDE+  +  +PD + + 
Sbjct: 230 REDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFN 289

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ +     G V E + +L    + G+ P    Y   I G  +   +  A+EL   + S 
Sbjct: 290 VLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSK 349

Query: 326 KFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               D    N LI   S ++    A+  +N M+  G+ P + T  +L K +    K D+ 
Sbjct: 350 GCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDA 409

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            +++ V+ A+    +  +Y + +  LC +  L EA  +  E+K      ++   N L++ 
Sbjct: 410 KKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDG 469

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   L  A +L++++   G   N+ TY I+I  F   G+++ A  L   M   G  PD
Sbjct: 470 LCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPD 529

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             TY +L+ G  +   L+   ++ ++    DV
Sbjct: 530 IITYNTLMRGFYESNKLEEVVQLLHRMAQKDV 561



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/527 (22%), Positives = 218/527 (41%), Gaps = 46/527 (8%)

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
           S +  ++  L + K+  + FS++N+++ +         N LL  L +   +      F  
Sbjct: 70  SSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAG 129

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +  RG   + + +   I   C   ++ +   +   +R ++       V    +I G C  
Sbjct: 130 ILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF--LRMQKLGCTPDVVTYGTLIKGLCGT 187

Query: 240 KRVEEAFKVLDEL-----RIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
             +  A K+  E+     R    CKP+ I Y I+ +    +G   E + + ++ +  G+ 
Sbjct: 188 GNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMI 247

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
           P    Y   I G     +  E+K L          +D+                      
Sbjct: 248 PSIISYNSLIHGFCCAGKWEESKRL----------LDE---------------------- 275

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M+++G  P + T + L   LCK  K  E  ++  V+  +    D+ +YN ++   C  
Sbjct: 276 --MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMV 333

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L  A  +   M  KG +PDV  YN L+    +   +  A KL+++M   G   N+ TY
Sbjct: 334 GDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITY 393

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           + L+      G+++ A +LF  M   G+A ++ TY   L+GLC+   L  A ++F +  +
Sbjct: 394 DSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKS 453

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLADAREVE 590
            +  L    L+  +  LC+ G    A +L   LS++ GH     ++ I++       +V+
Sbjct: 454 SNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE-GHEPNVVTYTIMIHGFCREGQVD 512

Query: 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
            A   I+ ++ +  T        L      S+  E ++ LLH + +K
Sbjct: 513 KANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQK 559



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             ++    A+ FF+ M+     P+LS+ ++L   L K     ++  +Y  +  +   +D 
Sbjct: 45  TGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDR 104

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            + N++++ LC   RLRE +     + R+G  P++  YN+L++  C E  +  A +L+ +
Sbjct: 105 CTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLR 164

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML------EKGVAPDATTYTSLLEG 514
           M   GC+ ++ TY  LI      G I  AL+L   ML      E    P+  TY  +++G
Sbjct: 165 MQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDG 224

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           LC+      A ++F +     ++ +    ++ +   C  G +  + +LL     +GL  D
Sbjct: 225 LCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPD 284

Query: 570 L 570
           +
Sbjct: 285 M 285


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/518 (22%), Positives = 228/518 (44%), Gaps = 25/518 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFI 125
           AL  F WAS  P FTHS  +Y ++++ L    + + +  +L ++        D  ++  +
Sbjct: 55  ALQTFKWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEEIFLTV 114

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF-DEMSHRG 184
           I  L + +       V + +    ++   +I NS+L VL     ID A + +  +M   G
Sbjct: 115 IRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVD-IDVAREFYRKQMMGSG 173

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V+     F + +   C   ++G    +L  ++ R   +   +V+   ++H  CK  +V  
Sbjct: 174 VQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSR--GVKPNAVVYNTLLHALCKNGKVGR 231

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  ++DE+     +P+ + + ++   +    ++ +  V+L+K   LG  P      + + 
Sbjct: 232 ARSLMDEIE----EPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVE 287

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVP 363
            L    R+ EA E+ E +      +D    N L+     +   + A  F   M  KG +P
Sbjct: 288 ILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLP 347

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + L    C     D  ++++  +  +    + ++Y+ ++  L   GR+ E   ++
Sbjct: 348 NVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKIL 407

Query: 424 QEMK--RKGLDPDVSFYNSLMEACCREDLLRPAKKL---WDQMFASGCSGNLKTYNILIS 478
           + M+  + G    +S YNS++    ++++   A +     +++F      +L+     I 
Sbjct: 408 ELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDRSLR-----IL 462

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F E G ++ A  +F  M+ +G  P+   Y  L+ G CQE NL+ AFE+ N+ V H   L
Sbjct: 463 GFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFL 522

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
             S  +  +   C +G    A KLL     RG   D G
Sbjct: 523 VASGFNALIHGFCGQGKDESALKLLDDMVGRGCVPDRG 560



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 142/389 (36%), Gaps = 45/389 (11%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   I K C   +   V  +LDE+     S  +  +  + +I G  + + +    KVLD 
Sbjct: 75  YRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEEIF-LTVIRGLGRARMIPHVIKVLDL 133

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVE 309
           +      P    +  + +    +     RE    +K+ +G   + +DY   IL  GL + 
Sbjct: 134 ISKFGKNPSLKIFNSILDVLVKVDIDVARE--FYRKQMMGSGVQGDDYTFAILMKGLCLT 191

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            RI +   L +V+ S                                  +G  P     +
Sbjct: 192 NRIGDGFRLLQVMKS----------------------------------RGVKPNAVVYN 217

Query: 370 NLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
            L   LCK  K      +  ++   ND      ++NV+++  C    L +A  ++++   
Sbjct: 218 TLLHALCKNGKVGRARSLMDEIEEPNDV-----TFNVLIAAYCKEENLVQALVLLEKSFS 272

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G  PDV     ++E  C    +  A ++ +++   G   ++  YN L+  F  +G+I+ 
Sbjct: 273 LGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKV 332

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A R    M  KG  P+  TY  L+ G C       A ++FN      +        T + 
Sbjct: 333 AHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIK 392

Query: 549 SLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
            L   G      K+L  +    G S   +
Sbjct: 393 GLFFGGRIEEGLKILELMEESKGGSGGRI 421


>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Brachypodium distachyon]
          Length = 721

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 232/556 (41%), Gaps = 13/556 (2%)

Query: 5   PATDLATRISQAIISASNRTRPAR-KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           P  DL+      ++  + R    R  WTP LE  L  L LR  LSP  V  V+       
Sbjct: 48  PEDDLSEESRSRLVRDTCRLLEQRGSWTPKLEAQLRHL-LR-VLSPPQVRAVLRAQAQGD 105

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
              A  FF WA +Q  + H+P  +  +L  LS +R  +    V++ +    +      + 
Sbjct: 106 ARAAFEFFRWADRQWQYRHAPEVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFA 165

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            ++ S  +    + A  V   ++ +       ICN  + VL   G +D AL   D M   
Sbjct: 166 HLMLSYSRAGKLRSAMRVLQLMQTDGCAPDISICNVAVNVLVVAGRVDKALGFADRMRRV 225

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           GVE   + +   I   C   ++ + L M+  + K  N      +    ++   CK KRV 
Sbjct: 226 GVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLK--NGCPPDKISYYTVMSFLCKEKRVS 283

Query: 244 EAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           E   +L  +R       D + Y ++       G   E    L++            Y   
Sbjct: 284 EVRSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRFRVDEVGYSAV 343

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEK 359
           +    +  R+ EAKE+   ++S +   D    +A++     +  ID   A      M + 
Sbjct: 344 VHSFCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEID--QARKMMKHMYKN 401

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLRE 418
           G  P + T + L   LCK  KS E  E+    S  D++T  + +Y+V++      G+L+E
Sbjct: 402 GCKPNIVTHTALLNGLCKVGKSSEAWELLNK-SGEDWWTPSDITYSVVMHGFRREGKLKE 460

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           +  V+ +M +KG  P     N L+ A C+E     AK+  +Q  + GC+ N+  +  +I 
Sbjct: 461 SCDVVAQMLQKGFFPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIH 520

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            FS  G++E AL L  ++      PD  TYT ++  L ++  L+ A  +  K +N  ++ 
Sbjct: 521 GFSRQGDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVP 580

Query: 539 ARSILSTFMISLCRRG 554
                 T +   C +G
Sbjct: 581 TLVTYRTVIHRYCEKG 596



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/510 (19%), Positives = 208/510 (40%), Gaps = 46/510 (9%)

Query: 67  ALGFFNWASQ---QPNFTHSPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVY 122
           ALGF +   +   +P+     ++Y+ ++K L S+ R + A++ +   +K N    D   Y
Sbjct: 215 ALGFADRMRRVGVEPDV----VTYNCLIKGLCSVRRVVEALEMIGVMLK-NGCPPDKISY 269

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMS 181
             ++  L + K   +  S+   ++ +   +  ++  N L+ VLA  G+ D AL+   E  
Sbjct: 270 YTVMSFLCKEKRVSEVRSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESE 329

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            +      +G+   +  FC N ++ +   ++ E+  +E       V    ++ GFC+   
Sbjct: 330 GKRFRVDEVGYSAVVHSFCLNGRMAEAKEIVGEMISKECH--PDVVTYSAVVDGFCRIGE 387

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +++A K++  +    CKP+ + +  +      +G   E   +L K  +    P    Y  
Sbjct: 388 IDQARKMMKHMYKNGCKPNIVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSV 447

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKG 360
            + G   E ++ E+ ++   ++   F      +N LI ++     P  A  F      KG
Sbjct: 448 VMHGFRREGKLKESCDVVAQMLQKGFFPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKG 507

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
               +   + +     ++   +  + +   L  ++   D+ +Y V+V+ L   GRL+EA 
Sbjct: 508 CTINVVNFTTVIHGFSRQGDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEAT 567

Query: 421 GVIQEMKRKGLDPDV---------------------------------SFYNSLMEACCR 447
           G++++M  +GL P +                                 S YN ++E  C 
Sbjct: 568 GLVEKMLNRGLVPTLVTYRTVIHRYCEKGTVEELVDLLDKMLARQELKSVYNQVIEKLCA 627

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L  A  L  ++  +    + +T +IL+  F   G    A  +   M ++ + PD   
Sbjct: 628 FGKLNEAYGLLSKVLRTASQRDAQTCHILMESFLNRGLTIQAYNVACRMFQRNLIPDLKL 687

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              + + L  E   QAA ++  K V   ++
Sbjct: 688 CQKVDDRLVLEERKQAAGKLIVKFVERGLL 717



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           E ++ M+  L  +     A  V++ M R+G+      +  LM +  R   LR A ++   
Sbjct: 127 EVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFAHLMLSYSRAGKLRSAMRVLQL 186

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC+ ++   N+ ++     G ++ AL     M   GV PD  TY  L++GLC    
Sbjct: 187 MQTDGCAPDISICNVAVNVLVVAGRVDKALGFADRMRRVGVEPDVVTYNCLIKGLCSVRR 246

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--- 577
           +  A E+    + +     +    T M  LC+         LL  + +D G     V   
Sbjct: 247 VVEALEMIGVMLKNGCPPDKISYYTVMSFLCKEKRVSEVRSLLATMRNDAGLLTDQVTYN 306

Query: 578 ILLKSLADAREVEMAIEHIK 597
           +L+  LA     + A+E ++
Sbjct: 307 MLIHVLAKHGHADEALEFLR 326


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/569 (23%), Positives = 248/569 (43%), Gaps = 28/569 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFI 125
           AL  F WAS+ PNFTHS  +Y +++  L   R+ + +  +L ++ K   +  D S++  I
Sbjct: 31  ALQTFEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQHLLDEMPKSIGLPPDESIFLTI 90

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF-DEMSHRG 184
           I  L + +  +    V + V    ++   +I NS+L VL  +  ID A K +  +M   G
Sbjct: 91  IRGLGRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVKED-IDLARKFYRKKMMGAG 149

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           ++     +G+ +   C   ++G+   +L  ++ R   +    VI   ++H  C   +V  
Sbjct: 150 IQGDDYTYGILMKGLCLTNRIGEGFKLLQVIKSR--GLKPNVVIYNTLLHALCNNGKVGR 207

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +++E++    +P+ + + ++   +    +  +  V+L+K   LG  P      + + 
Sbjct: 208 ARSLMNEIK----EPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVE 263

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVP 363
            L    R+ EA E+ E + S    +D    N LI         +        M  KG +P
Sbjct: 264 ILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLP 323

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              T + L    C+    +  ++++  +  +    +  +++ ++  L + GR  + + ++
Sbjct: 324 NADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFKIL 383

Query: 424 QEMK--RKGLDPDVSFYNSLMEACCREDLLRPAKKL---WDQMFASGCSGNLKTYNILIS 478
           + M+  R      +S YNS++    R+++L  A +     + +F      +L+     I 
Sbjct: 384 ELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLR-----IL 438

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F E G I+ A R++  M  +G  P A  Y  L+ G CQE  ++ A E+ N+ V      
Sbjct: 439 GFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFP 498

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
             S  +  +   CR G    A KLL     RG   D G   S+  L+ +L   +  + A 
Sbjct: 499 VASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTG---SYSPLIDALCRKKSFQKAA 555

Query: 594 EHIKWIQESSPTMLQEISAELFASLSSSS 622
             +  + E+  T    I   LF  LS  +
Sbjct: 556 SLLLQMVENGITPDYLIWNSLFHCLSQQT 584


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/566 (21%), Positives = 247/566 (43%), Gaps = 82/566 (14%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYR 123
           S AL +F WAS  PNF HS  +Y +++  L   R+ + +  +L ++  +        ++ 
Sbjct: 50  SEALEYFRWASTVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFI 109

Query: 124 FIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE-MS 181
            II  L + + T+    V + V KF+      +I NS+L VL  +  ID A + + + M 
Sbjct: 110 TIIRGLGRARMTRTVIKVLDLVYKFHGSP-SLKIFNSILDVLVKED-IDMAREFYRKSMM 167

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             GVE     FG+ +   C   ++G+   +L  ++ R   +   +V+   ++H  C+  +
Sbjct: 168 ASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSR--GVAPNTVVYNTLLHALCRNGK 225

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V  A  +++E+      P+ + + I+   +   G+  +  V+L+K   +G  P      +
Sbjct: 226 VGRARNLMNEME----DPNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTK 281

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            +  L    R  EA E+ E + S    +D    N LI G   +   +  + F   M  KG
Sbjct: 282 VLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKG 341

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P + T + L     +    D  ++++  +  +    +  +++ ++  LC+  R+ + +
Sbjct: 342 CLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGF 401

Query: 421 GVIQEMK--RKGLDPDVSFYNSLMEAC--------------------------------- 445
            +++ M+  ++G    +S YNS++                                    
Sbjct: 402 SILELMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRSLMILEH 461

Query: 446 CREDLLRPAKKLWDQMFASG---------C-------SGNLK------------------ 471
           C++  +  AK+++DQM   G         C        GN++                  
Sbjct: 462 CKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIP 521

Query: 472 -TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+N +I+ F   G++E AL+L  ++  +G  P+  TY+ L++ LC+  +LQ A +VF +
Sbjct: 522 STFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQ 581

Query: 531 SVNHDVMLARSILSTFMISLCRRGHF 556
            V+  ++    I ++ ++SL +  HF
Sbjct: 582 MVDKGILPDLFIWNSLLLSLSQERHF 607



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 18/328 (5%)

Query: 299 YREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
           YR  I  L   RR    K+L  E+  S      DD+   +I G   +   R+ I   + +
Sbjct: 72  YRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFITIIRGLGRARMTRTVIKVLDLV 131

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGR 415
            +    P+L   +++   L K +  D   E Y K + A+    D  ++ +++  LC + R
Sbjct: 132 YKFHGSPSLKIFNSILDVLVKED-IDMAREFYRKSMMASGVEGDDYTFGILMKGLCLTNR 190

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + E + ++Q +K +G+ P+   YN+L+ A CR   +  A+ L ++M       N  T+NI
Sbjct: 191 IGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEMEDP----NDVTFNI 246

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LIS + + G    AL L       G  PD  + T +LE LC       A EV  +  +  
Sbjct: 247 LISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMG 306

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAI 593
            +L     +T +   C  G   V    L+ + +   L + D++ +L+   +++  +++A+
Sbjct: 307 GLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLAL 366

Query: 594 --------EHIKWIQESSPTMLQEISAE 613
                   + IKW   +  T+++ + +E
Sbjct: 367 DLFNDMKTDGIKWNFVTFDTLIRGLCSE 394


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 199/430 (46%), Gaps = 10/430 (2%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           I +A+++FDEM+ +G+      +G+ I   C+  K G  + + ++++        G V  
Sbjct: 93  IPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGN----CKGDVFT 148

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             +II   CK     EA  +  E+      PD + Y  + +     G + E     K+  
Sbjct: 149 YGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 208

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
             G++     Y   I GL       E      ++V   F+ D      LI G        
Sbjct: 209 GRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVG 268

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A      M  KG+ P + T + L   LC   + ++  ++++ L+      ++ SYN+++
Sbjct: 269 EAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILI 328

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +  C   ++ EA+ + +EM+ KGL P    YN+L+ A C+   +R A+KL+ +M   G  
Sbjct: 329 NGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 388

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             L TY +L+    + G +E A+ LF ++ +    P+   ++ LL+G+C+   L+ A++ 
Sbjct: 389 LKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 448

Query: 528 FNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
           F++ ++ + +   +I    +I+ LC +G    A KLL  +     L  S +  +++++L 
Sbjct: 449 FDE-ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLL 507

Query: 585 DAREVEMAIE 594
              E+  AI+
Sbjct: 508 KENEIHEAIQ 517



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 200/469 (42%), Gaps = 37/469 (7%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F    ++  +++K + +   I     +  ++    +  D+  Y  +I  L + + T  A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 139 FSVFNEVKFNCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
             +  ++K NC+ D+       ++  L  DG    AL MF EM   G+    + +   + 
Sbjct: 132 IKLHEKMKGNCKGDV--FTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 189

Query: 198 KFCENAKLGQVLSMLDEVRKRE--------NSMING------------------------ 225
             C   +L + L    E+  R         NS+I+G                        
Sbjct: 190 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 249

Query: 226 -SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            +    ++I G CK  +V EA ++L+ +  +  +PD + Y  +     L+G + +   + 
Sbjct: 250 DAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 309

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SS 343
           +     G+      Y   I G   +++I EA  L E +            N LIG++  S
Sbjct: 310 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQS 369

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
              R+A   F  M   G+   LST   L   LCK    +E +++++ +   ++  ++E +
Sbjct: 370 GRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVF 429

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           ++++  +C +G+L EA+    E+ + GL+PD   YN L+   C + +L  A KL  QM  
Sbjct: 430 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 489

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            GC  +  T+N++I    +  EI  A++L   M  +  +PD    + LL
Sbjct: 490 KGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 181/422 (42%), Gaps = 46/422 (10%)

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V  +T+  GV++    EN  +   + + DE+   E  +   +    ++I+G CK ++   
Sbjct: 78  VTVTTLVKGVWM----ENG-IPDAVQLFDEMT--EKGLFGDAKTYGILINGLCKARKTGL 130

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A K+ ++++   CK D   Y ++ +     G   E   +  +    G+ P    Y   + 
Sbjct: 131 AIKLHEKMK-GNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 189

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF-NFMIEKGRVP 363
           GL    R+ EA E  + +     + D    N+LI  +S       + +F N M+++G  P
Sbjct: 190 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 249

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
                                          D FT    + +++  LC  G++ EA  ++
Sbjct: 250 -------------------------------DAFT----FTILIDGLCKEGKVGEAQQIL 274

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           + M  KG +PD+  YN+LM   C    L  A KL++ +   G   N+ +YNILI+ + + 
Sbjct: 275 ELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKD 334

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            +I+ A RLF  M  KG+ P   TY +L+  LCQ   ++ A ++F +       L  S  
Sbjct: 335 QKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 394

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQE 601
              +  LC+ GH   A  L + +       +  V  ILL  +  A ++E A +    I +
Sbjct: 395 CVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 454

Query: 602 SS 603
           + 
Sbjct: 455 NG 456



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 42/249 (16%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS--- 413
           +++G  P   T++ L K +   N   + V+++  ++    F D ++Y ++++ LC +   
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 414 -------------------------------GRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                                          G   EA  +  EM   G+ PDV  Y+SLM
Sbjct: 129 GLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  CR   L+ A + + +M   G S ++ TYN LI   S  G  +      + M+++G +
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           PDA T+T L++GLC+E  +  A ++     +K    D++      +T M  LC  G    
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDIL----TYNTLMNGLCLVGQLED 304

Query: 559 ATKLLRGLS 567
           ATKL   L+
Sbjct: 305 ATKLFESLA 313



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 175/422 (41%), Gaps = 9/422 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y  I+ SL           +  ++    I  D  VY  ++  L +    ++A   F E
Sbjct: 147 FTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 206

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++           NSL+  L+  G         + M  RG       F + I   C+  K
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266

Query: 205 LG---QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           +G   Q+L ++    K  + +   +     +++G C   ++E+A K+ + L  R  K + 
Sbjct: 267 VGEAQQILELMHHKGKEPDILTYNT-----LMNGLCLVGQLEDATKLFESLADRGIKLNV 321

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG-E 320
            +Y I+   +     + E   + ++ R  G+ P T  Y   I  L    R+  A++L  E
Sbjct: 322 FSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVE 381

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +   G+F         L G   +     AI  F  + +    P +   S L   +C+  K
Sbjct: 382 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 441

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +E  + +  +S N    D  +YN++++ LC  G L EA  ++ +M+ KG  PD   +N 
Sbjct: 442 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 501

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++   +E+ +  A +L ++M     S +    ++L+   S   +   AL    N L+KG
Sbjct: 502 IIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKG 561

Query: 501 VA 502
           V 
Sbjct: 562 VG 563



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           ++G +PD     +L++    E+ +  A +L+D+M   G  G+ KTY ILI+   +  +  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A++L H  ++     D  TY  +++ LC++     A ++F++ +   ++    + S+ M
Sbjct: 130 LAIKL-HEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 548 ISLCRRGHFLVATKLL-----RGLSSDL 570
             LCR G    A +       RG+S+D+
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADV 216


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/543 (22%), Positives = 240/543 (44%), Gaps = 22/543 (4%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W   LE  L +L LR SL P  V  V+   L +   +AL FF WA +Q  + H P+ Y+ 
Sbjct: 86  WNAKLEGDLRRL-LR-SLKPRQVCAVLQ--LQSDERIALDFFYWAGRQWRYRHDPIVYYM 141

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL+ +    I      +  ++ S  +    + A  V   ++   
Sbjct: 142 MLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAG 201

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + VL     ++ AL+  + M   G+  + + +   I  +C+   L QV 
Sbjct: 202 VEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCD---LYQVE 258

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECK--PDFIAYRI 266
             ++ + +          ++   + GF C+ KR++E   +++++ +++ K  PD + Y  
Sbjct: 259 HAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKM-VKDNKLFPDQVTYNT 317

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G   E    L++  + G       Y   +    ++ R+  AKE+   +++  
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            + D     A++  +  +     A      M + G  P   + + L   LC+   S E  
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAR 437

Query: 386 EVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           E+    S  D++T +  +Y+V++  L   G+L EA  V++EM  KG  P     N L+++
Sbjct: 438 EMMNT-SEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKS 496

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C E  +  AKK  ++    GC+ N   +  +I  F +   I+ AL L  +M      PD
Sbjct: 497 LCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPD 556

Query: 505 ATTYTSLLEGLCQETNLQAA----FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           A T+T++++ L ++  ++ A     ++  K ++   +  R+++  +    C+ G      
Sbjct: 557 AVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQY----CKMGRVEELI 612

Query: 561 KLL 563
           KLL
Sbjct: 613 KLL 615



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 139/310 (44%), Gaps = 6/310 (1%)

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           +P+  A+ +V+  +   G +     VL   +K GV P        I  L++  ++ +A  
Sbjct: 170 RPEAFAHVMVS--YSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALR 227

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             E +     T +    N LI G         A+     M  KG  P   +   +   LC
Sbjct: 228 FLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLC 287

Query: 377 KRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           +  +  E+  +  K++  N  F D  +YN +V  L   G   EA   ++E + +G   D 
Sbjct: 288 QDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDK 347

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y++++ + C +  +  AK++ ++M   GCS ++ TY  +++   +VG++E A ++   
Sbjct: 348 VGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQ 407

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCRRG 554
           M + G  P+  +YT+LL GLCQ  N   A E+ N S   D     +I  S  M  L R G
Sbjct: 408 MYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTS-EEDWWTPNAITYSVVMHGLRREG 466

Query: 555 HFLVATKLLR 564
               A  ++R
Sbjct: 467 KLSEACDVVR 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/540 (21%), Positives = 214/540 (39%), Gaps = 129/540 (23%)

Query: 56  INPYLLTHHSLALGF---------FNWASQQPNFTHSP---LSYHSILKSLSLSRQINAI 103
           I P ++T++ L  G+             ++ P F   P   +SY++++  L   ++I  +
Sbjct: 237 ITPNVVTYNCLIKGYCDLYQVEHAMELIAEMP-FKGCPPDKVSYYTVMGFLCQDKRIKEV 295

Query: 104 DSVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
            +++ K VK NK+  D   Y                                   N+L+ 
Sbjct: 296 RNLMEKMVKDNKLFPDQVTY-----------------------------------NTLVH 320

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           +L+  G+ D AL+   E   RG +   +G+   +  FC   ++ +   +++E+  +  S 
Sbjct: 321 MLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCS- 379

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-RE 281
               V    +++G CK  +VEEA K+L ++    CKP+ ++Y  +       G+  E RE
Sbjct: 380 -PDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEARE 438

Query: 282 VV---------------------LKKKRKL-------------GVAPRTNDYREFILGLI 307
           ++                     L+++ KL             G  P   +    I  L 
Sbjct: 439 MMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLC 498

Query: 308 VERRICEAKELGE---------------VIVSGKFTIDDDVLNAL--------------- 337
           +E+++ EAK+  E                ++ G F   D++  AL               
Sbjct: 499 LEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHG-FCQSDNIDTALSLLDDMYLNNKHPDA 557

Query: 338 IGSVSSIDP-------RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-K 389
           +   + ID          A V+   M++KG  PT  T   +    CK  + +EL+++  K
Sbjct: 558 VTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGK 617

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +LS +   T   +YN ++  LC  G    A  V+  + R     D +  + LME+   + 
Sbjct: 618 MLSRSKCRT---AYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKG 674

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTY 508
           +   A K+  +MF      +LK    L  K    G++E A  L    +++G ++PD++ +
Sbjct: 675 IPLSAYKVACRMFDRNLIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRGNISPDSSQH 734


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 207/488 (42%), Gaps = 77/488 (15%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP----------------------- 154
           D+++Y +++ +  + +N  +AF +F E+    E   P                       
Sbjct: 268 DATIYSYMVLAHCKLENLDEAFKLFLEMAV--ESKAPLNNVAWTAFLSGLCKSGKIEQAF 325

Query: 155 EICNS--------------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           E C +              L+ +L   G ID A +   E++ R ++ S+      I + C
Sbjct: 326 EACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELC 385

Query: 201 ENAKLGQVLSMLDEVRKR--------ENSMINGSVIAVLI-------------------- 232
           +  ++   LS+L+ + KR         + +IN    A  I                    
Sbjct: 386 KAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSS 445

Query: 233 -------IHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                  ++  CK K+V +AF +   +   R   PD ++Y I+ + F  +  +   E + 
Sbjct: 446 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLY 505

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-S 343
           K+   L   P    Y  F+ GL+ + RI +A+ + E +V+   + D    + LI   S +
Sbjct: 506 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLA 565

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A   F  MI +G  P   T + L   LCK +K DE  E+++ +       D  +Y
Sbjct: 566 RKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTY 625

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++   C  G++ +A  V  EM  KG DPDV  YN L++   R      AK+L+  M +
Sbjct: 626 TTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVS 685

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQ 522
             C  +  ++NI+I   S+   ++ A+ +F  M  + G +PD  TY SL+ GLC E  L 
Sbjct: 686 RQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS 745

Query: 523 AAFEVFNK 530
            A +VF +
Sbjct: 746 EAMKVFKE 753



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/559 (21%), Positives = 228/559 (40%), Gaps = 50/559 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL FF W  Q  NF H   +Y+ +L  L   R +     V +++    +  +   Y  ++
Sbjct: 113 ALTFFRWL-QARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 127 PSLIQGKNTQKAFSVFNEV-----------------------------KFNCEDIGPEIC 157
            S    +N+ +A   F E+                             +    D+   + 
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 158 NSLL---AVLASDGYIDNAL---KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
             ++   A+L +    D A+   K+F  M   G +     +   +   C+   L +   +
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR--IRECKPDF-IAYRIVA 268
             E+     + +N +V     + G CK  ++E+AF+    ++  +   +P + +  R++ 
Sbjct: 292 FLEMAVESKAPLN-NVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLI 350

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           E     G + + E    +     + P +      I  L    R+  A  L E ++   + 
Sbjct: 351 ES----GRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYC 406

Query: 329 IDDDVLNALIGSVSSIDP-RSAIVFFNFMIEK--GRVPTLSTLSNLSKNLCKRNKSDELV 385
            D    + LI  +   D  + A  F   M  K   R  +  + ++L  +LCK  K  +  
Sbjct: 407 PDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAF 466

Query: 386 EVYKVL-SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++  + S   +  D+ SY++++   C    L  A  + ++M      P+V+ YN+ +  
Sbjct: 467 AIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNG 526

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             R+  +  A+ ++++M A+GCS ++ TY+ LI  FS   + + A  LF  M+ +G  P+
Sbjct: 527 LMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPN 586

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A TY  LL GLC+E+    A E+F K V       R   +T +   C  G    A ++  
Sbjct: 587 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFD 646

Query: 565 GLSSDLGHSDSHVILLKSL 583
            + S  GH D  V+    L
Sbjct: 647 EMVSK-GH-DPDVVAYNCL 663



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/487 (21%), Positives = 202/487 (41%), Gaps = 40/487 (8%)

Query: 103 IDSVLKQVKVNKITLDSS--VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           I+   +  +  + +L SS  VY  +I  LI+     KA     E+           C+S+
Sbjct: 321 IEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSV 380

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +  L   G +D+AL + + M  RG         + I + C+  K+ +    L  + ++ +
Sbjct: 381 IQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKIS 440

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMGSVFE 279
           S  +       +++  CK K+V +AF +   +   R   PD ++Y I+ + F  +  +  
Sbjct: 441 SRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGR 500

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
            E + K+   L   P    Y  F+ GL+ + RI +A+ +                     
Sbjct: 501 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV--------------------- 539

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                        +  M+  G  P + T S L        K D+  E+++ + +     +
Sbjct: 540 -------------YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPN 586

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +YN ++  LC   +  EA+ + ++M  +G DPD   Y +L+   C    +  A +++D
Sbjct: 587 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFD 646

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M + G   ++  YN L+  F   G+   A +LF  M+ +   PD  ++  +++GL +  
Sbjct: 647 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAK 706

Query: 520 NLQAAFEVFNK-SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV- 577
            L  A EVF +   +H         ++ +  LC       A K+ + +       D H  
Sbjct: 707 RLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAF 766

Query: 578 -ILLKSL 583
            +LL+++
Sbjct: 767 NVLLEAI 773



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 20/192 (10%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA    + ++ +    DV  YN L++   R   L+ A +++++M A G   N  TY +L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-EVFN----KSV 532
                    + A+R F  M++KG  P +T Y  + E L + T  +  F  VF     K V
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECL-KATGKEGEFSRVFGRDLEKRV 230

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVIL----LKSLA 584
             ++ML +++L  F+I    +   + A+KL R +       D    S+++L    L++L 
Sbjct: 231 AVEMMLKKALLVNFVI----QDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLD 286

Query: 585 DARE--VEMAIE 594
           +A +  +EMA+E
Sbjct: 287 EAFKLFLEMAVE 298



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 45/273 (16%)

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E +  ++ L A ++  D+ +YN ++  L     L++A  V ++M  +G+ P+   Y  L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           ++ C E     A + + +M   G   +   Y  +       G+     R+F   LEK VA
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 503 -----------------------------------PDATTYTSLLEGLCQETNLQAAFEV 527
                                              PDAT Y+ ++   C+  NL  AF++
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 528 F-NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-HVILLKSLAD 585
           F   +V     L     + F+  LC+ G    A +  R +   L  S   + +L++ L +
Sbjct: 292 FLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIE 351

Query: 586 AREVEMAIEHI-----KWIQESSPT---MLQEI 610
           +  ++ A E       + IQ SS T   ++QE+
Sbjct: 352 SGRIDKAEEACLEIAGRNIQPSSGTCHSVIQEL 384



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 114/285 (40%), Gaps = 41/285 (14%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMV 407
           A+ FF  M++KG  P+ +    +++ L    K  E   V+ + L        M    ++V
Sbjct: 183 AVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLV 242

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------ 461
           +F+     + EA  + + M + G  PD + Y+ ++ A C+ + L  A KL+ +M      
Sbjct: 243 NFVIQDKAI-EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKA 301

Query: 462 ---------FASG-C-SGNLK------------------TYNILISKFSEVGEIEGALRL 492
                    F SG C SG ++                   Y++LI    E G I+ A   
Sbjct: 302 PLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEA 361

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +  + + P + T  S+++ LC+   + +A  +    +        +  S  +  LC+
Sbjct: 362 CLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCK 421

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVI----LLKSLADAREVEMAI 593
                 A + L+G+   +    S       LL SL  A++V  A 
Sbjct: 422 ADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAF 466



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 35/235 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++   SL+R+ +    + + +       ++  Y  ++  L +     +A  +F +
Sbjct: 553 ITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 612

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     D       +LL    + G I+ A+++FDEM  +G +   + +   +  F    K
Sbjct: 613 MVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 672

Query: 205 LGQVLSMLDEVRKRE--------NSMING--------SVIAVL----------------- 231
            G+   +   +  R+        N MI+G          + V                  
Sbjct: 673 PGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYN 732

Query: 232 -IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            +I G C  +R+ EA KV  E+   +  PD  A+ ++ E  K  G V++ E+  K
Sbjct: 733 SLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIKC-GIVYQFEIRFK 786


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 157/327 (48%), Gaps = 2/327 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++   C   R+EEA  V+ ++R   C P+ + Y  +   F   G +   E V+   R+ 
Sbjct: 15  ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 74

Query: 291 GVA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RS 348
           G A P    +   + GL    R+  A+++ + +V      D    N L+     +     
Sbjct: 75  GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 134

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           ++  F+ M ++G VP + T ++L    CK    ++ V +   +       +  ++  ++ 
Sbjct: 135 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G L +A   ++EM++ G+ P V  YN+L+   C+   +  A++L  +M A     
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 254

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY+ +IS + +VG ++ A +L   ML+KGV PDA TY+SL+ GLC+E  L  A E+F
Sbjct: 255 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 314

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGH 555
              +   V       +T +   C+ G+
Sbjct: 315 ENMLQLGVQPDEFTYTTLIDGHCKEGN 341



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 181/410 (44%), Gaps = 3/410 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L + G ++ A+ +  +M   G   + + +   +  FC   +L     ++  +R+
Sbjct: 14  NILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             N+  N  V    +++G CK  R+E A KV DE+      PD ++Y  +   +  +G +
Sbjct: 74  EGNAKPN-LVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 132

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   V  +  + G+ P    +   I        + +A  L   +      +++    AL
Sbjct: 133 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 192

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G         A++    M + G  P++   + L    CK  + D   E+ + + A   
Sbjct: 193 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 252

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y+ ++S  C  G L  A+ + Q+M +KG+ PD   Y+SL+   C E  L  A +
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 312

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L++ M   G   +  TY  LI    + G +E AL L   M+ KGV PD  TY+ L+ GL 
Sbjct: 313 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 372

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +    + A  +  K + H+  +  +I    ++  C +  F     LL+G 
Sbjct: 373 KSARTKEAHRLLFK-LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 421



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 203/474 (42%), Gaps = 28/474 (5%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
            + +PN     ++++S++  L  + ++     V  ++    +  D   Y  ++    +  
Sbjct: 75  GNAKPNL----VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 130

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
              ++ +VF+E+      + P++    SL+      G ++ A+ +  +M  RG+  + + 
Sbjct: 131 CLHESLAVFSEMTQ--RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLD 250
           F   I  FC+   L   L  ++E+RK     I  SV+    +I+G+CK  R++ A +++ 
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRK---CGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +  KPD + Y  +   +  +G++     + +K  K GV P    Y   I GL  E+
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+ +A EL E ++      D+     LI G     +   A+   + MI KG +P + T S
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM------------VSFL---CTSG 414
            L   L K  ++ E   +   L   D   D   Y+ +            V+ L   C  G
Sbjct: 366 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 425

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++EA  V Q M  +    D S Y+ L+   CR   +R A     QM  SG S N  +  
Sbjct: 426 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTI 485

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            L+    E G +  A     ++L      DA    +L++   +E N+ A  +V 
Sbjct: 486 SLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVL 539



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 103/200 (51%), Gaps = 1/200 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P + T + L + LC R + +E V V   +       +  +YN +V+  C +G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 416 LREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           L  A  V+  M+ +G   P++  +NS++   C+   +  A+K++D+M   G + ++ +YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            L+S + +VG +  +L +F  M ++G+ PD  T+TSL+   C+  NL+ A  +  +    
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 535 DVMLARSILSTFMISLCRRG 554
            + +     +  +   C++G
Sbjct: 181 GLRMNEVTFTALIDGFCKKG 200



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 10/219 (4%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M R G+ P+V  YN L+ A C    L  A  +   M  +GC+ N  TYN L++ F   GE
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 486 IEGALRLFHNMLEKGVA-PDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLAR 540
           ++GA R+   M E+G A P+  T+ S++ GLC+   ++ A +VF++ V      DV+   
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 541 SILSTFMISLCRRGHFLVATKLL-RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWI 599
           ++LS +    C      V +++  RGL  D+    S   L+ +   A  +E A+  +  +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS---LIHATCKAGNLEQAVALVAQM 177

Query: 600 QESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           +E    M +     L        + +  LL +  ++ KC
Sbjct: 178 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR-KC 215


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 223/507 (43%), Gaps = 16/507 (3%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
            P LE  L + G+  ++   L  RV+N       +L   FF WAS+QP + HS  +Y ++
Sbjct: 90  VPKLELALQESGV--TMRAGLTERVLNR-CGDAGNLGYRFFVWASKQPGYRHSYENYKAM 146

Query: 91  LKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFN 148
           +K  S  RQ  A+ ++L+++ K N + + S ++  +I      +  +KA  V +E+ K+ 
Sbjct: 147 VKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYG 206

Query: 149 CEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           CE   P+  +   LL  L  +G +  A  +F++M  R    S   F   ++ +C   KL 
Sbjct: 207 CE---PDEYVFGCLLDALCKNGSVKQAASLFEDMRVR-FSPSLRHFTSLLYGWCREGKLI 262

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L  V+ RE       V+   ++  +    ++ +AF +L E+  + C+P+  +Y I
Sbjct: 263 EAKHVL--VQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTI 320

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS-G 325
           + + F     + E   V  +  + G       Y   I G     +I    ++ + +   G
Sbjct: 321 MIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQKG 380

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   L  L+      +    +     M   G VP LS  + + +  CK  +  + V
Sbjct: 381 HMPNQLTYLRILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEVKQGV 440

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSLME 443
           +++  + A+D+  +++++ +M+      G L EA    +EM  +GL   P       L+ 
Sbjct: 441 QIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEACEYFKEMIGRGLLTTPQYGILKELLN 500

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A  R + L  AK +W  +   GC  N   + I I      G ++ A     +M+E  + P
Sbjct: 501 ALLRGEKLGMAKDVWSCIVTKGCELNADAWTIWIHSLFSNGHVKEACSYCLDMMEADIMP 560

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK 530
              T+  L+ GL +  N + A E+  K
Sbjct: 561 KPETFAKLMRGLRKLYNREFAAEITEK 587



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 173/363 (47%), Gaps = 9/363 (2%)

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G   S   +   +  F +  + G V ++L+E+RK +NS++  S + +++I  F   + VE
Sbjct: 135 GYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRK-DNSVLITSELFIVLIRRFASARLVE 193

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A +VLDE+    C+PD   +  + +     GSV ++   L +  ++  +P    +   +
Sbjct: 194 KAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV-KQAASLFEDMRVRFSPSLRHFTSLL 252

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRV 362
            G   E ++ EAK +   +    F  D  V N L+ + S     + A      M+ KG  
Sbjct: 253 YGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKGCE 312

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P  ++ + + +  C + K DE + V+  +       D+ +Y  ++S  C  G++   Y +
Sbjct: 313 PNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQI 372

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +  MK+KG  P+   Y  ++ A  +++ L    +L + M   GC  +L  YN++I    +
Sbjct: 373 LDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACK 432

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +GE++  +++++ M     +P+  T+  ++ G   +  L  A E F +      M+ R +
Sbjct: 433 LGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEACEYFKE------MIGRGL 486

Query: 543 LST 545
           L+T
Sbjct: 487 LTT 489


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 214/494 (43%), Gaps = 54/494 (10%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPL----------SYHSILKSLSLSRQ 99
           S+V++   P ++    L  GFFN  + +       +          SY++++   S + Q
Sbjct: 87  SVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQ 146

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICN 158
           I++ + V  +++    + D   Y  +I SL      + AF V +E+ K  C+   P +  
Sbjct: 147 IDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCK---PSVIT 203

Query: 159 SLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
             + + A+  +G I+ AL++FDE+  RG+      +   I   C   K G     LD VR
Sbjct: 204 YTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC---KEGMEDRALDFVR 260

Query: 217 KRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
                  N  V++  +++  F    R E+  +++ ++ +  C+P+ + + I+   F   G
Sbjct: 261 HLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREG 320

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V E   VL+  ++ G+ P +  Y   I     E R+                   D+  
Sbjct: 321 RVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRL-------------------DL-- 359

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        AI +   M+  G +P +   + +   LCK   +D  ++V++ L    
Sbjct: 360 -------------AIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG 406

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + +YN M S L + G   +A  +I EM RKG+DPD   YNSL+   CR+ L+  A 
Sbjct: 407 CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAI 466

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L   M A+     + ++NI++    +   +   + L   M+EKG  P+ T+Y  L+EG+
Sbjct: 467 GLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGI 526

Query: 516 CQETNLQAAFEVFN 529
                   A E+ N
Sbjct: 527 AYAGWRAEAMELAN 540



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 166/396 (41%), Gaps = 44/396 (11%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I GF K  +++ A +V D +R R   PD + Y I+       G +     V+ +  K G
Sbjct: 137 MISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG 196

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---------- 341
             P    Y   I   I+E RI EA EL + +VS     D    NA+I  +          
Sbjct: 197 CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRAL 256

Query: 342 ------SSIDPRSAIVFFNF--------------------MIEKGRVPTLSTLSNLSKNL 375
                 S+      +V +N                     M+  G  P + T S L  + 
Sbjct: 257 DFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSF 316

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+  +  E V V +V+       D  SY+ ++S  C  GRL  A   +++M   G  PD+
Sbjct: 317 CREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDI 376

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+++   C+      A  +++++   GC   ++ YN + S     G    AL +   
Sbjct: 377 VNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISE 436

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF---MISLCR 552
           M+ KG+ PD  TY SL+  LC++  +  A  +    V+ +    +  + +F   ++ +C+
Sbjct: 437 MIRKGIDPDEITYNSLISCLCRDGLVDEAIGLL---VDMEATRFQPTVISFNIVLLGMCK 493

Query: 553 RGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADA 586
                   +LL  +     L +  S+V+L++ +A A
Sbjct: 494 AHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYA 529



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 144/324 (44%), Gaps = 12/324 (3%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV---- 292
           C+  +  E+   L+ +  +  KPD +         KL+   F    + K  R + +    
Sbjct: 73  CRAGKHNESLYFLESVVSKGFKPDVVLCT------KLIKGFFNSRNLKKAMRVMEILETY 126

Query: 293 -APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
             P    Y   I G     +I  A ++ + + S  F+ D    N +IGS+ S      A 
Sbjct: 127 GDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              + +++ G  P++ T + L +      + +E +E++  L +     D+ +YN ++  +
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G    A   ++ +  +G +PDV  YN L+ +   +      ++L   M  SGC  N+
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T++ILIS F   G +  A+ +   M EKG+ PD+ +Y  L+   C+E  L  A E   K
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366

Query: 531 SVNHDVMLARSILSTFMISLCRRG 554
            V+   +      +T + +LC+ G
Sbjct: 367 MVSDGCLPDIVNYNTILATLCKFG 390


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 220/491 (44%), Gaps = 17/491 (3%)

Query: 49  PSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLK 108
           P L  RV++  +     +AL FF W   QP+F  S   + +IL  L  +  ++A   V++
Sbjct: 85  PHLFIRVLHS-MRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVME 143

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLAS 166
           +V        S     ++  LI G        VF+++  N   + P++  CN +L VL  
Sbjct: 144 RVV-------SFEMHGVVDVLIAGH--VXCLLVFDKMIRN--GLLPDVKNCNRILRVLRD 192

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           +  +  A  ++  M   G++ + + +   +  +C+  ++ Q L +L E+++R        
Sbjct: 193 ENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQER--GCYPND 250

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   ++++G  K   +E+A  +++E+           Y  +   F   G   E   ++++
Sbjct: 251 VTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
                  P  + Y   + GL    ++   +     ++  KFT D    N+L+ G   +  
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A + F+ +  +  VPT+ T + L   LC     D  + + K ++    F D+ +Y +
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +V+     G +  A G   EM  KGL PD   YN+ +    +      A  + ++M A+G
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              ++ TYN+ +    + G  E A  L  NM+  G+ PD  TYTS++ G  +  +L+ A 
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAR 550

Query: 526 EVFNKSVNHDV 536
           EVFN+ ++  V
Sbjct: 551 EVFNEMLSKGV 561



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/486 (19%), Positives = 202/486 (41%), Gaps = 19/486 (3%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           +Q     + ++Y+++L S     +++    +L +++      +   Y  ++  L +    
Sbjct: 207 EQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGEL 266

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  +  E+  +  ++     N L+      G    A  + +EM +R    +   +   
Sbjct: 267 EQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL 326

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLD 250
           ++  C   K  QV      VR R + M+       ++     ++G+C+   + EAF + D
Sbjct: 327 MYGLC---KWVQVTG----VRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFD 379

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLI 307
           EL+ R+  P  I Y  +     + G +   +  L+ K+++   G+ P    Y   + G  
Sbjct: 380 ELKCRDLVPTVITYNTLIHGLCMWGYL---DAALRLKKEMTDQGLFPDIFTYTILVNGCF 436

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
               +  A+     ++S     D    N  ++G +   D   A      M+  G  P + 
Sbjct: 437 KLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVI 496

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T +     LC++   +E  ++ + + ++    D  +Y  +++    +G LR+A  V  EM
Sbjct: 497 TYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM 556

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             KG+ P V  Y  L+ A   + +L  A   + +M       N+ TYN +I+       +
Sbjct: 557 LSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRM 616

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A + F  M EKG+ P+  +YT L+   C     + A  ++ + ++  +       S F
Sbjct: 617 DEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVF 676

Query: 547 MISLCR 552
           + +L R
Sbjct: 677 LKNLHR 682



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 2/242 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           +  M + G  PT+ T + +  + CK  + D+ +E+   +     + +  +YNV+V+ L  
Sbjct: 203 YGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSK 262

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L +A G+I+EM   GL+     YN L+   C++ L   A  L ++M        L T
Sbjct: 263 KGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L+    +  ++ G    F +ML+    PD  ++ SLL G C+   +  AF +F++  
Sbjct: 323 YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELK 382

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
             D++      +T +  LC  G+   A +L + ++      D  ++ IL+        V 
Sbjct: 383 CRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVS 442

Query: 591 MA 592
           MA
Sbjct: 443 MA 444



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%)

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V+  +  N    D+++ N ++  L     L +A  V   M++ G+ P V  YN+++++ C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E  +  A +L  +M   GC  N  TYN+L++  S+ GE+E A  L   ML  G+   A 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           TY  L+ G CQ+     AF++  + VN       S  +T M  LC+
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 4/218 (1%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            ++ F+ MI  G +P +   + + + L   N   +   VY ++        + +YN M+ 
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  GR+ +A  ++ EM+ +G  P+   YN L+    ++  L  AK L ++M  SG + 
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNV 283

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC---QETNLQAAF 525
           +  TYN LI+ F + G    A  L   M+ +   P  +TY +L+ GLC   Q T ++  F
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343

Query: 526 -EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            ++       D++   S+L  +  + C    FL+  +L
Sbjct: 344 SDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL 381


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/509 (22%), Positives = 226/509 (44%), Gaps = 45/509 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A GF NW  ++  F     SY +++  L+ + +++    +  ++   ++  D + Y  +I
Sbjct: 168 ARGFLNWMWKE-GFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILI 226

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG 184
              ++ K+ + A  +++++      + P +   N +++ L+  G +D+ LK++D M    
Sbjct: 227 DGFLKEKDHKMAMQLWDKL-LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNE 285

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            E     +   I   C+   + +  S+ +E+ +R+ + I+  V    ++ GFC+  +++E
Sbjct: 286 REKDLYTYSSLIHGLCDEGNVDKAESVFNELVERK-AFID-VVTYNTMLGGFCRCGKIKE 343

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           + ++   +  R    + ++Y I+ +     G + E  ++ +     G A     Y  FI 
Sbjct: 344 SLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIH 402

Query: 305 GLIV-----------------------------------ERRICEAKELGEVIVSGKFTI 329
           GL V                                   +RR+ EA  L + +      +
Sbjct: 403 GLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVEL 462

Query: 330 DDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
           +  V NALIG +   D R   A +    M + G +PT+ + + L   LC+  K  E    
Sbjct: 463 NSHVCNALIGGLIR-DSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAF 521

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            K +  N    D+++Y++++  LC   ++  A  +  +  + GL+PDV  +N L+   C 
Sbjct: 522 VKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCS 581

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L  A  +   M    C+ NL TYN L+  + +V +   A  ++  M + G+ PD  +
Sbjct: 582 VGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIIS 641

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           Y ++L+GLC    +  A E F+ + NH +
Sbjct: 642 YNTILKGLCLCHRVSYAIEFFDDARNHGI 670



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 132/576 (22%), Positives = 233/576 (40%), Gaps = 94/576 (16%)

Query: 46  SLSPSLVARVI----NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           SLSP  V +++    NP        A   F+ A++ P + HS + YH IL+ LS +R + 
Sbjct: 7   SLSPKHVLKLLKSEKNP------RAAFALFDSATRHPGYAHSAVVYHHILRRLSEARMVT 60

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEICNS 159
            +  +++ ++  +   D  V   +I +  +     +A  VF  ++  F CE  G    N+
Sbjct: 61  HVGRIVELIRSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEP-GIRSYNT 119

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL              +F      GV  +   + V I   C+  +  +    L+ + K  
Sbjct: 120 LLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEG 179

Query: 220 NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF------- 271
                  V +   +I+   K  ++++A ++ DE+  R   PD   Y I+ + F       
Sbjct: 180 ---FKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHK 236

Query: 272 ---KLMGSVFEREVV-----------------------LKKKRKLGVAPRTND---YREF 302
              +L   + E   V                       LK   ++    R  D   Y   
Sbjct: 237 MAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSL 296

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGR 361
           I GL  E  + +A+ +   +V  K  ID    N ++G        + ++  +  M ++  
Sbjct: 297 IHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNS 356

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           V  +S  + L K L +  K DE   +++++ A  Y  D  +Y + +  LC +G + +A G
Sbjct: 357 VNIVS-YNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALG 415

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ--------------------- 460
           V+QE++ KG   DV  Y S+++  C++  L  A  L  +                     
Sbjct: 416 VMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLI 475

Query: 461 --------------MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
                         M  +GC   + +YNILI    E G+   A      MLE G+ PD  
Sbjct: 476 RDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLK 535

Query: 507 TYTSLLEGLCQETNLQAAFEVFNK----SVNHDVML 538
           TY+ LL GLC++  ++ A E++++     +  DVM+
Sbjct: 536 TYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMM 571



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 195/455 (42%), Gaps = 8/455 (1%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           H +A+  ++   +  +   +  +++ ++  LS   +++    +  ++K N+   D   Y 
Sbjct: 235 HKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYS 294

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +I  L    N  KA SVFNE+      I     N++L      G I  +L+++  M  R
Sbjct: 295 SLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQR 354

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
               + + + + I    EN K+ +  +M+  +   +    + +   + I HG C    V 
Sbjct: 355 N-SVNIVSYNILIKGLLENGKIDEA-TMIWRLMPAKGYAADNTTYGIFI-HGLCVNGYVN 411

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A  V+ E+  +    D  AY  + +       + E   ++K+  K GV   ++     I
Sbjct: 412 KALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALI 471

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKG 360
            GLI + R+ +A  L   +  GK      V+  N LI G   +     A  F   M+E G
Sbjct: 472 GGLIRDSRLSDASLLMRGM--GKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENG 529

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P L T S L   LC+  K +  +E++     +    D+  +N+++  LC+ G+L +A 
Sbjct: 530 LKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAM 589

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V+  M+ +    ++  YN+LME   +      A  +W  M+  G   ++ +YN ++   
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGL 649

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
                +  A+  F +    G+ P   T+  L+  +
Sbjct: 650 CLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAV 684


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 138/577 (23%), Positives = 263/577 (45%), Gaps = 37/577 (6%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-AID 104
           +++ SLV RVI  +      LAL F +W  ++ +  HS  S   ++  L  S++ + A+ 
Sbjct: 4   NMTCSLVGRVICKFQ-NSPQLALEFHDWVLEKKSVLHSIESCCVVIHVLVNSKRYDDALF 62

Query: 105 SVLKQVKVNKIT----LDS------------SVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
            +   + VN I+    LD+            +V+  ++ +  Q   T+ A+ V  +++ +
Sbjct: 63  IMGNLMNVNGISPLEVLDALISSYDICKSSPAVFDALVRTCTQIGATEGAYEVITKLQLD 122

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
              +     N+ L+ L     ++   KM+ EM   G   +   F + I+   +  +L + 
Sbjct: 123 GFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEA 182

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE---CKPDFIAYR 265
           +S++   R  +  +    V   +II G  K   ++ A K++ ++ +      KPD + Y 
Sbjct: 183 VSVI--YRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYN 240

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLG--VAPRTNDYREFILGLIVERRICEAKELGEVIV 323
                F  +G++   E    KK  LG  + P    Y   + G      +  A  L + +V
Sbjct: 241 SFVNGFCKIGNLAVAEEF--KKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELV 298

Query: 324 SGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 +  + N++I  +S   D   A +  + MI+K   P   T S + + LC+    +
Sbjct: 299 EKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLN 358

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  +  +++       D  S+NV++++LC S  L  A  ++  M  +GL PDV  + +L+
Sbjct: 359 EAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLI 418

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +  C++  +  A +++++M  +G   NL  YN +I+ F++ G  + A+ L   +   G+ 
Sbjct: 419 DRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF 478

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            D  TY +L+ G C    +  AF +F++  N  ++ +    +T + SLC+ GH L A +L
Sbjct: 479 -DVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKEL 537

Query: 563 -----LRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
                LRGL  D     ++ IL+ S +     E  IE
Sbjct: 538 MKMMVLRGLIPDY---VTYTILITSFSKKCSPEEVIE 571



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 164/387 (42%), Gaps = 7/387 (1%)

Query: 168 GYIDNALKM---FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           G +D ALK+    + MS   V+  ++ +  F+  FC+   L        E+  +E    N
Sbjct: 212 GAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEP-N 270

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
               A L+  G+ +   +E AF++ DEL  +   P+ + Y  +     + G +    ++L
Sbjct: 271 VRTYATLV-DGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLL 329

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-S 343
                  + P    Y   I GL     + EA +  ++I+      D    N +I  +  S
Sbjct: 330 SDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRS 389

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            +   A      M  +G VP + T   L    CK  K +  ++VY+ +       ++  Y
Sbjct: 390 NNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIY 449

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++     G    A  +I  ++R GL  DV  YN+L+   C    +  A  L+ +M  
Sbjct: 450 NSVINGFAKEGSFDPAILLIDTLRRMGL-FDVVTYNTLIHGYCNCGKIDQAFALFSEMRN 508

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG   +  TYN LI+   + G +  A  L   M+ +G+ PD  TYT L+    ++ + + 
Sbjct: 509 SGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPEE 568

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISL 550
             E+ +  V   V+  R    T +I L
Sbjct: 569 VIELHDYMVLKGVVPDRQTYQTMVIPL 595


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 202/473 (42%), Gaps = 14/473 (2%)

Query: 64  HSLALGFFN----WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS 119
           H+ A+  FN         P F      +++IL SL   ++     S+ K +    IT D 
Sbjct: 50  HNDAVALFNRMLLMRPPPPTF-----QFNNILSSLVKMQRFPTAISLSKHLDFKGITSDL 104

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
                +I           +FSV   +             +L+  L   G +  ALK  D+
Sbjct: 105 VTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDD 164

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCK 238
           +     +   I +G  I   C   K+G+  + +  +R  E   I   V+   +II   CK
Sbjct: 165 VVALEFQLDRISYGTLINGLC---KIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCK 221

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            K V EA  +  E+  ++  P+ + Y  +   F +MG + E   +L + +   + P    
Sbjct: 222 NKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYT 281

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           +   I  L  E ++  AK +  V++      D    N+L+     ++  + A   FN M 
Sbjct: 282 FSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMA 341

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + + + +   LCK    DE + +++ +   +   +  ++N ++  LC SGR+ 
Sbjct: 342 QSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIA 401

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
             + ++ +M+ +    DV  Y+SL++A C+   L  A  L+ +M       ++ TY ILI
Sbjct: 402 YVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILI 461

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
               + G ++ A  +F ++L KG   D  TYT ++ G C+      A  + +K
Sbjct: 462 DGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSK 514



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 171/380 (45%), Gaps = 5/380 (1%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K +R   A  +   L  +    D +   I+   F  +G +     VL    K G
Sbjct: 75  ILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRG 134

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P        I GL +   + +A +  + +V+ +F +D      LI  +  I + ++AI
Sbjct: 135 YHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAI 194

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                + E+   P +   + +  +LCK     E   +Y  ++A   + ++ +Y  ++   
Sbjct: 195 QLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGF 254

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G L EA  ++ EMK K ++PDV  ++ L++A  +E  ++ AK +   M  +    ++
Sbjct: 255 CIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDV 314

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN L+  +  V E++ A  +F++M + GV P   +YT +++GLC+   +  A  +F +
Sbjct: 315 VTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEE 374

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADARE 588
             + +V+      ++ +  LC+ G       L+  +   S L    ++  L+ +L     
Sbjct: 375 MKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCH 434

Query: 589 VEMAIEHIKWI--QESSPTM 606
           ++ AI   K +  QE  P M
Sbjct: 435 LDQAIALFKKMITQEIQPDM 454



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 100/219 (45%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A+  FN M+     P     +N+  +L K  +    + + K L      +D+ + N
Sbjct: 49  DHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLN 108

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           ++++  C  G++  ++ V+  + ++G  PDV    +L++  C    ++ A K  D + A 
Sbjct: 109 ILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVAL 168

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
               +  +Y  LI+   ++GE + A++L  N+ E+ + PD   Y  +++ LC+   +  A
Sbjct: 169 EFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEA 228

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             ++++     +       +T +   C  G  + A  LL
Sbjct: 229 CNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALL 267



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P    +N+++ +  +      A  L   +   G + +L T NILI+ F  +G+I  +  +
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L++G  PD  T T+L++GLC    ++ A +  +  V  +  L R    T +  LC+
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 553 RGHFLVATKLLRGL 566
            G    A +L+R L
Sbjct: 187 IGETKAAIQLMRNL 200


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 199/435 (45%), Gaps = 9/435 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L        A+ + D M  +G +   + +GV +   C+        ++L+++  
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME- 248

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  +  G +I   II G CK K +++A  +  E+  +  +P+ + Y  +       G  
Sbjct: 249 -QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
            +   +L    +  + P    +   I   + E ++ EA++L + +V  K +ID  ++  +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV--KRSIDPSIVTYS 365

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI      D    A   F FM+ K   P + T + L K  CK  + +E +EV++ +S  
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 425

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               +  +YN+++  L  +G    A  + +EM   G+ P++  YN+L++  C+   L  A
Sbjct: 426 GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             +++ +  S     + TYNI+I    + G++E    LF N+  KGV PD   Y +++ G
Sbjct: 486 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG 545

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C++ + + A  +F +      +      +T + +  R G    + +L++ + S     D
Sbjct: 546 FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605

Query: 575 SHVILLKS--LADAR 587
           +  I L +  L D R
Sbjct: 606 ASTIGLVTNMLHDGR 620



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 198/451 (43%), Gaps = 10/451 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     +++++++  L L  + +   +++ ++       D   Y  ++  L +  +T 
Sbjct: 183 QPN----TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF++ N+++    + G  I N+++  L    ++D+AL +F EM  +G+  + + +   I
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
              C   +      +L ++ +R+   IN  V     +I  F K  ++ EA K+ DE+  R
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERK---INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P  + Y  +   F +   + E + + +        P    Y   I G    +R+ E 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            E+   +       +    N LI G   + D   A   F  M+  G  P + T + L   
Sbjct: 416 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K ++ + V++ L  +     + +YN+M+  +C +G++ + + +   +  KG+ PD
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  YN+++   CR+     A  L+ +M   G   N   YN LI      G+ E +  L  
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            M   G A DA+T   L+  +  +  L  +F
Sbjct: 596 EMRSCGFAGDAST-IGLVTNMLHDGRLDKSF 625



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 209/454 (46%), Gaps = 46/454 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL+ +A     D  + + ++M + G+  +   + + I  FC  ++L   L++L ++ K  
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E +++  S +    ++G+C  KR+ EA  ++D++ +   +P+ + +  +     L    
Sbjct: 147 YEPNIVTLSSL----LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKA 202

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++ +    G  P    Y   + GL      C+               D D+   L
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGL------CKRG-------------DTDLAFNL 243

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           +  +        ++ +N +I+                LCK    D+ + ++K +      
Sbjct: 244 LNKMEQGKLEPGVLIYNTIID---------------GLCKYKHMDDALNLFKEMETKGIR 288

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y+ ++S LC  GR  +A  ++ +M  + ++PDV  +++L++A  +E  L  A+KL
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 348

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +D+M       ++ TY+ LI+ F     ++ A ++F  M+ K   PD  TY +L++G C+
Sbjct: 349 YDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 408

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSD-- 574
              ++   EVF + ++   ++  ++    +I  L + G   +A ++ + + SD    +  
Sbjct: 409 YKRVEEGMEVF-REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQESS--PTM 606
           ++  LL  L    ++E A+   +++Q S   PT+
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +L +A  +  EM +    P +  ++ L+ A  + +       L +QM   G   N  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ILI+ F    ++  AL +   M++ G  P+  T +SLL G C    +  A  + ++
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 182/402 (45%), Gaps = 9/402 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALK 175
           D++ +  ++  L       +A  VF+  K   E   P +    +L+  L  D  +  AL 
Sbjct: 125 DTATFTTLVRGLCVVGKIGEALDVFD--KMVGEGFQPNVVTYGTLMNGLCKDRQLTEALN 182

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIH 234
           +F EM  +G+      +   I   C   +   V ++L+E+ K   S I  +V+++ +++ 
Sbjct: 183 LFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVK---SKIMPNVVSLNIVVD 239

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             CK  +V EA  V+D +     +PD + Y  + +   L   + E   V     + G   
Sbjct: 240 ALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVC 299

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFF 353
               Y   I G    +RI +A  L E +   +   +    + LI  +  +   + AI  F
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALF 359

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           N M+  G++P L T S L   LCK ++  E + + K +  ++   D++ YN+ +  +C +
Sbjct: 360 NEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRA 419

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L  A  +   +  +GL PDV  +N ++   C+  LL  A KL+ +M  +GC  N  TY
Sbjct: 420 GDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTY 479

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           N +     +  +   A++L   ML +G + D +T   L++ L
Sbjct: 480 NTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 3/337 (0%)

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD     IV   F  +  V     VL K  KLG  P T  +   + GL V  +I EA ++
Sbjct: 89  PDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDV 148

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +V   F  +      L+ G         A+  F+ MI KG  P + T ++L   LC 
Sbjct: 149 FDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCN 208

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +   +  +   +  +    ++ S N++V  LC  G++ EA+ V+  M + G++PDV  
Sbjct: 209 LCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVT 268

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y +LM+  C    +  A K++D M  +GC  N+ +YN LI+ + ++  I+ A+ LF  M 
Sbjct: 269 YAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMC 328

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
            + + P+  TY++L+ GLC    LQ A  +FN+ V    +      S  +  LC+     
Sbjct: 329 RQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLA 388

Query: 558 VATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMA 592
            A  LL+ +       D  V  I +  +  A ++E A
Sbjct: 389 EAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAA 425



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/465 (22%), Positives = 200/465 (43%), Gaps = 14/465 (3%)

Query: 82  HSP---LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           H P     +  +L S++  +  + + S+ K++    I  D      +I S         A
Sbjct: 51  HPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFA 110

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            SV  ++             +L+  L   G I  AL +FD+M   G + + + +G  +  
Sbjct: 111 LSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNG 170

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
            C++ +L + L++  E+  +    I+  +     +IH  C     +    +L+E+   + 
Sbjct: 171 LCKDRQLTEALNLFSEMIAKG---ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKI 227

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+ ++  IV +     G V E   V+    + GV P    Y   + G  +   + EA +
Sbjct: 228 MPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVK 287

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           + +++V      +    N LI     I     A+  F  M  +  +P   T S L   LC
Sbjct: 288 VFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLC 347

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              +  + + ++  + A     ++ +Y++++ +LC + RL EA  +++ ++   LDPDV 
Sbjct: 348 HVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQ 407

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN  ++  CR   L  A+ L+  +   G   ++ T+NI+I    + G ++ A +LF  M
Sbjct: 408 VYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREM 467

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
            E G   +  TY ++ +GL Q      A ++  +      MLAR 
Sbjct: 468 DENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEE------MLARG 506



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 161/368 (43%), Gaps = 21/368 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y +++  L   RQ+    ++  ++    I+ D   Y  +I +L      +
Sbjct: 158 QPNV----VTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWK 213

Query: 137 KAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              ++ NE VK     I P +   N ++  L  +G +  A  + D M   GVE   + + 
Sbjct: 214 HVTTLLNEMVK---SKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYA 270

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVL 249
             +   C  +++ + + + D + +      NG V  V+    +I+G+CK +R+++A  + 
Sbjct: 271 ALMDGHCLRSEMDEAVKVFDMMVR------NGCVCNVVSYNTLINGYCKIQRIDKAMYLF 324

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           +E+  +E  P+ + Y  +      +G + +   +  +    G  P    Y   +  L   
Sbjct: 325 EEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLN-ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            R+ EA  L + I       D  V N A+ G   + D  +A   F+ +  +G  P + T 
Sbjct: 385 HRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTH 444

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + + + LCKR   DE  ++++ +  N    +  +YN +   L  + +   A  +++EM  
Sbjct: 445 NIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLA 504

Query: 429 KGLDPDVS 436
           +G   DVS
Sbjct: 505 RGFSADVS 512



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + TL+ +  + C  N+ D  + V   +    +  D  ++  +V  LC  G++ EA
Sbjct: 86  GIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEA 145

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V  +M  +G  P+V  Y +LM   C++  L  A  L+ +M A G S ++ TYN LI  
Sbjct: 146 LDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHA 205

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              + E +    L + M++  + P+  +   +++ LC+E  +  A +V +  +   V   
Sbjct: 206 LCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPD 265

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +  M   C R     A K+ 
Sbjct: 266 VVTYAALMDGHCLRSEMDEAVKVF 289



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+     P +   + L  ++ K      ++ + K + +     D+ +  ++++
Sbjct: 40  ALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVIN 99

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   R+  A  V+ ++ + G  PD + + +L+   C    +  A  ++D+M   G   
Sbjct: 100 SFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQP 159

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  L++   +  ++  AL LF  M+ KG++PD  TY SL+  LC     +    + 
Sbjct: 160 NVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLL 219

Query: 529 NKSVNHDVMLARSILSTFMISLCRRG 554
           N+ V   +M     L+  + +LC+ G
Sbjct: 220 NEMVKSKIMPNVVSLNIVVDALCKEG 245



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L  +M + G   ++ T  I+I+ F  +  ++ AL +   +L+ G  PD  T+T+L+ GLC
Sbjct: 78  LSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLC 137

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
               +  A +VF+K V            T M  LC+      A  L      +G+S D+ 
Sbjct: 138 VVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIF 197

Query: 572 HSDSHVILLKSLADAREV 589
             +S +  L +L + + V
Sbjct: 198 TYNSLIHALCNLCEWKHV 215


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 133/561 (23%), Positives = 229/561 (40%), Gaps = 61/561 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ-VKVNKITLDSSVYRFI 125
           +LGFF + S+Q NF  +  SY  ++  LS  R  +   + L Q V + K     +V   I
Sbjct: 51  SLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNV---I 107

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
              L+          V+ E  F+     P + + +L V    G   NAL +FD M   G 
Sbjct: 108 WDELV---------GVYREFAFS-----PTVFDMILKVYVEKGLTKNALYVFDNMGKCGR 153

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
             S       +    +N +      +  ++ +    ++    +  ++++ FCK  +V+EA
Sbjct: 154 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRV--GIVPDVFMVSIMVNAFCKDGKVDEA 211

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              + ++     +P+ + Y  +   +  +G V   + VLK   + GV+     Y   I G
Sbjct: 212 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 271

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
              + ++ EA++                                 V      E   VP  
Sbjct: 272 YCKQCKMDEAEK---------------------------------VLRGMQEEAALVPDE 298

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                L    C+  K D+ V +   +      T++   N +++  C  G + EA GVI  
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M    L PD   YN+L++  CRE     A  L D+M   G    + TYN L+     VG 
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + AL+++H M+++GVAPD   Y++LL+GL +  N + A  ++   +      +R   +T
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 478

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSLADAREVEMAIEHIKWIQES 602
            +  LC+ G  + A ++   +  DLG S   +    L+     A  V  A + +K   E 
Sbjct: 479 MISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMER 536

Query: 603 SPTMLQEISAELFASLSSSSY 623
            P      S E++ SL S  +
Sbjct: 537 EPI---SPSIEMYNSLISGLF 554



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/485 (22%), Positives = 206/485 (42%), Gaps = 41/485 (8%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +S++       +I+  + V+ ++    +  DS  Y  ++    +  +T +AF++ +  K 
Sbjct: 337 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KM 394

Query: 148 NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             E I P +   N+LL  L   G  D+AL+++  M  RGV    +G+   +    +    
Sbjct: 395 LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENF 454

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               ++  ++  R        +    +I G CK  ++ EA ++ D+++   C PD I YR
Sbjct: 455 EGASTLWKDILAR--GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 512

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVS 324
            + + +    +V +   V     +  ++P    Y   I GL   RR+ E  +L  E+ + 
Sbjct: 513 TLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR 572

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
           G  T +     ALI G         A   +  M E G    +   S +   L +  + DE
Sbjct: 573 G-LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE 631

Query: 384 LVEVYKVLSANDYFTDMES--------------------------------YNVMVSFLC 411
              + + +  + +F D E                                 YN+ ++ LC
Sbjct: 632 ANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLC 691

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G++ +A      +  KG  PD   Y +L+        +  A +L D+M   G   N+ 
Sbjct: 692 KTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV 751

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TYN LI+   +   ++ A RLFH + +KG+ P+  TY +L++G C+  N+ AAF++ +K 
Sbjct: 752 TYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKM 811

Query: 532 VNHDV 536
           +   +
Sbjct: 812 IEEGI 816



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 163/394 (41%), Gaps = 43/394 (10%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +++++++  L    ++   + +  ++K    + D   YR +I    +  N  +AF
Sbjct: 469 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 528

Query: 140 SVFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            V   ++   E I P  E+ NSL++ L     +     +  EM  RG+  + + +G  I 
Sbjct: 529 KVKGAMER--EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALID 586

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            +C+   L +  S   E+   EN +    +I   ++ G  +  R++EA  ++ ++     
Sbjct: 587 GWCKEGMLDKAFSSYFEMT--ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 644

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD   +      +  +  + +    L +  K  + P    Y   I GL      C+   
Sbjct: 645 FPDHECFLKSDIRYAAIQKIADS---LDESCKTFLLPNNIVYNIAIAGL------CK--- 692

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
                 +GK  +DD                 A  FF+ +  KG VP   T   L      
Sbjct: 693 ------TGK--VDD-----------------ARRFFSMLSLKGFVPDNFTYCTLIHGYSA 727

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE   +   +       ++ +YN +++ LC S  +  A  +  ++ +KGL P+V  
Sbjct: 728 AGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 787

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           YN+L++  C+   +  A KL D+M   G S +++
Sbjct: 788 YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQ 821


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 197/450 (43%), Gaps = 36/450 (8%)

Query: 135 TQKAFSVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           ++ AF +F E+ +  CE   P +   N L+ VL  +G +  A ++FDEM+  G++ +TI 
Sbjct: 270 SRDAFKLFEEMHRSGCE---PTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTIT 326

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKR---------------------------ENSMIN 224
           F V I  + +  ++ Q  +   E++ R                           ++ M  
Sbjct: 327 FNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFG 386

Query: 225 GSVIAV---LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
             ++A    +++   C   R+++A+++L     +        +  +   +   G   E  
Sbjct: 387 SHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAF 446

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + +   KLG+AP ++ +   I+GL  + R+ EA+ L E +VS  + +       L  S 
Sbjct: 447 ELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASF 506

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              +   A+  ++ M + G  P     S     LC+ +  +E  + +  ++A     +  
Sbjct: 507 REGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNF 566

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++S LC +G + EA  + Q M++ GL PD+   N L++  CRE  L     L   M
Sbjct: 567 TYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDM 626

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            ++G + +  TYN +I+ +    ++  A+   + ML  G  PD  TY   +  LC    L
Sbjct: 627 CSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHML 686

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLC 551
             A +V ++ V           +T M  +C
Sbjct: 687 NQAGKVLDELVAMGCPPDSVTYNTLMDGIC 716



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 178/434 (41%), Gaps = 23/434 (5%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +  A  +F+EM+ RG   S   F   I  FC    L +V S L  +   E  ++    
Sbjct: 198 GEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRG-LVRVASGLLGIMG-EFGIVPNVC 255

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              ++I G C      +AFK+ +E+    C+P  + Y I+ +     G + E   +  + 
Sbjct: 256 SYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEM 315

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            ++G+   T  +   I G     R+ +A      + +     D    N +          
Sbjct: 316 AQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHA 375

Query: 348 SAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           + +V     F + M+  G       +  L   LC   + D+  E+ +          +  
Sbjct: 376 AQLVHDHDMFGSHMLADG-------MDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTG 428

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N +++     G   EA+ + + M + GL P  S +N L+   C +  L  A+ L + M 
Sbjct: 429 FNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMV 488

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + G   +      L + F E G    AL+ + +M + G+ PD   +++ + GLC+   + 
Sbjct: 489 SKGYCLSTSFTICLDASFRE-GNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVN 547

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHV 577
            A++ F +     ++      ++ + +LCR G+   A KL +     GL  D+  S+   
Sbjct: 548 EAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSN--- 604

Query: 578 ILLKSLADAREVEM 591
           IL+  L    ++EM
Sbjct: 605 ILIDGLCREGKLEM 618



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 8/255 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A      M E G VP + + + L K  C    S +  ++++ +  +     + +YN++
Sbjct: 236 RVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNIL 295

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V  LC  GR+ EA  +  EM + G+  +   +N L++   +   +  A   + +M A G 
Sbjct: 296 VDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGL 355

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  T+NI+ +   + G    A +L H+    G    A     L+  LC +  L  A+E
Sbjct: 356 VPDSCTFNIIAAGAYKFGH---AAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWE 412

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLK 581
           +   ++     L+ +  +  + +  + G    A +L R     GL+      +  ++ L 
Sbjct: 413 LLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLC 472

Query: 582 SLADAREVEMAIEHI 596
           +     E ++ +EH+
Sbjct: 473 NQGRLDEAQLLLEHM 487



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%)

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G   EA  V+  ++R G  P +S   +L+    R   +  A  ++++M A G   +L 
Sbjct: 161 AAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGPRPSLA 220

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           T+N +I  F   G +  A  L   M E G+ P+  +Y  L++G C     + AF++F +
Sbjct: 221 TFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEE 279


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 138/628 (21%), Positives = 246/628 (39%), Gaps = 104/628 (16%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           LSP L A  +   +  H      + FF W S++P + H+   + S+L  L   R     D
Sbjct: 111 LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPAD 170

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
            +  ++ + K   +    R +   L +       FS+++             CN+LL  L
Sbjct: 171 HI--RILMIKACRNEEEIRRVADFLNEISGMGFGFSLYS-------------CNTLLIQL 215

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK-------LGQVLS------- 210
           A    ++ A  ++ +M + G++ S + F   I    +  K       L Q+         
Sbjct: 216 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDV 275

Query: 211 ------MLDEVRKRENSMING-------------SVIAVLIIHGFCKGKRVEEAFKVLDE 251
                 +L   R R   +  G             SV    +I+G C   RV+EA  +L+E
Sbjct: 276 FTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 335

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----- 306
           +  +  +P    Y +       +    E   ++ + +K G  P    Y   I GL     
Sbjct: 336 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 395

Query: 307 ---------------IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS--------- 342
                          +V   +     + E+ V G+F+    + + + G  S         
Sbjct: 396 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 455

Query: 343 -------SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                    D   A+V F  M++ G +PT+ T + L      +   +    +  ++  N 
Sbjct: 456 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 515

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +YN +VS     G+L  A    QEM   GL+P+   Y +L++   ++  +  A 
Sbjct: 516 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIAL 575

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L ++M   GC+ N+++YN +I+  S+      A ++   M E+G+ P+  TYT+L++GL
Sbjct: 576 SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGL 635

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD- 569
           C+    Q AF++F+       +      S+ +  LC+ G    A  LL     +GL+ D 
Sbjct: 636 CRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDE 695

Query: 570 ------------LGHSDSHVILLKSLAD 585
                       LG  D   +LL+ + D
Sbjct: 696 VTFTSLIDGFVVLGRIDHAFLLLRRMVD 723



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 197/473 (41%), Gaps = 34/473 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++        +N    +L  +K N    D   Y  ++    +    + A   F E
Sbjct: 486 VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQE 545

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +  P    +L+   + DG +D AL + + M   G   +   +   I    +  +
Sbjct: 546 MVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENR 605

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
             +   + D++   E  ++   +    +I G C+  R + AFK+  ++  R+C P+   Y
Sbjct: 606 FSEAEKICDKMA--EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 663

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGE 320
             +       G   E E++LK+  + G+AP    +   I G +V  RI  A    + + +
Sbjct: 664 SSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 723

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           V     +     +L  L      ++ + A+     ++F   +  V     +SNL   + +
Sbjct: 724 VGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDV-NFEIVSNLLARMSE 782

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                 L                ++Y+ +VS LC  GR  EA  ++++MK +G  PD   
Sbjct: 783 IGCEPTL----------------DTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREI 826

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y SL+ A C+   +  A K++  + A G   +L  Y  LI    + G++E A  LF NML
Sbjct: 827 YYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNML 886

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEV--------FNKSVNHDVMLARSI 542
           EK    D   +T L++GL +E  L    ++        F  ++   V+L R +
Sbjct: 887 EKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGREL 939



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 41/252 (16%)

Query: 383 ELVE----VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           E+VE    +YK +  +     + ++N +++ L   G++REA  ++ ++ +  L PDV  Y
Sbjct: 219 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 278

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
            SL+   CR   L  A  ++D+M   GC  N  TY+ LI+     G ++ AL +   M+E
Sbjct: 279 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338

Query: 499 KGVAP-----------------------------------DATTYTSLLEGLCQETNLQA 523
           KG+ P                                   +  TYT+L+ GL +   L+ 
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS--SDLGHSDSHVILLK 581
           A  +++K +   ++      +  +  LC  G F  A K+   +     L ++ ++  ++K
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIK 458

Query: 582 SLADAREVEMAI 593
            L    ++E A+
Sbjct: 459 GLCLGGDIEKAM 470


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 179/403 (44%), Gaps = 11/403 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEI--CNSLLAVLASDGYIDNAL 174
           D   Y  +I  L +  NT  A  +    V+ NC+   P +   N+++  L  D  +  A 
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ---PNVFAYNTIIDSLCKDRQVTEAF 221

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LII 233
            +F EM  +G+      +   I   C   +   V ++L+E+    +S I   V++   ++
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM---VDSKIMPDVVSFNTVV 278

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
              CK  +V EA  V+D++  R  +P+ + Y  + +   L+  + E   V       G  
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCM 338

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G    +RI +A  L   +   +   D    + LI  +  ++  + AI  
Sbjct: 339 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 398

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M+   ++P L T   L   LCK     E + + K +  ++   D++  N+ +  +C 
Sbjct: 399 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 458

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G L  A  +   +  KGL PDV  Y+ ++   CR  LL  A KL+ +M  +GC+ N   
Sbjct: 459 AGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCI 518

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           YN +   F    E   A++L   M+ +G + DA+T T  ++ L
Sbjct: 519 YNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 561



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 188/427 (44%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID A+  F+ M       ST+ F   +      AK+    ++L    + ++  I  ++  
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSI---AKMKHHSTLLSLSHQMDSFGIPPNIYT 98

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC   RV  AF VL ++     +PD   +  +     + G + E   +  K  
Sbjct: 99  LHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMI 158

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPR 347
             G  P    Y   I GL        A  L   +V      +    N +I S+       
Sbjct: 159 GEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVT 218

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ M+ KG  P + T ++L   LC   +   +  +   +  +    D+ S+N +V
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G++ EA+ V+ +M ++G++P+V  Y +LM+  C    +  A K++D M   GC 
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCM 338

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+ +YN LI+ + ++  I+ A+ LF  M  + + PD  TY++L+ GLC    LQ A  +
Sbjct: 339 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 398

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V    +         +  LC+  +   A  LL+ +       D  V  I +  +  
Sbjct: 399 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 458

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 459 AGELEAA 465



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 214/512 (41%), Gaps = 29/512 (5%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           + + +HS L  LSLS Q+++       +  N  TL       +I S         AFSV 
Sbjct: 72  AKMKHHSTL--LSLSHQMDSFG-----IPPNIYTL-----HILINSFCHLNRVGFAFSVL 119

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            ++             +L+  +  +G I  AL +FD+M   G     + +G  I   C+ 
Sbjct: 120 AKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKV 179

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
                 + +L  + ++       +V A   II   CK ++V EAF +  E+  +   PD 
Sbjct: 180 GNTSAAIRLLGSMVQKN---CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDI 236

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +      +        +L +     + P    +   +  L  E ++ EA ++ + 
Sbjct: 237 FTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDK 296

Query: 322 IVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           ++      +     AL+     +S +D   A+  F+ M+ KG +P + + + L    CK 
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMD--EAVKVFDTMVCKGCMPNVISYNTLINGYCKI 354

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + D+ + ++  +   +   D  +Y+ ++  LC   RL++A  +  EM      P++  Y
Sbjct: 355 QRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTY 414

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
             L++  C+   L  A  L   +  S    +++  NI I      GE+E A  LF N+  
Sbjct: 415 RILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSS 474

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           KG+ PD  TY+ ++ GLC+   L  A ++F +   +   L   I +T      R      
Sbjct: 475 KGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSR 534

Query: 559 ATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
           A +LL     RG S+D   + +  + +K L+D
Sbjct: 535 AIQLLQEMVARGFSAD---ASTMTLFVKMLSD 563


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 202/481 (41%), Gaps = 21/481 (4%)

Query: 63   HHSLALGFFNWASQQPNFTHSPLSYHSILKS--LSLSRQINAIDSVLKQVKVNKITLDS- 119
            H  LAL F  W  +QP      L++   L +  L  +R  ++  S+L+ +    I   S 
Sbjct: 840  HGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSI 899

Query: 120  ---------------SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
                           SV+  +I   ++      A   F  V           CN +LA +
Sbjct: 900  FGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASM 959

Query: 165  ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
              D   +    +F EMS +G+  +   F + I   C    L +  ++L ++   EN  + 
Sbjct: 960  VKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQME--ENGFVP 1017

Query: 225  GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
              V    +++ +CK  R + A +++D +  +  + D   Y +  +         +  ++L
Sbjct: 1018 TIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLL 1077

Query: 285  KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            KK RK  ++P    Y   I G + E +I  A ++   +     + +    NALIG    +
Sbjct: 1078 KKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHV 1137

Query: 345  -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
             D   A+   + M   G      T   L   LCK  K +    + + +  ND      +Y
Sbjct: 1138 GDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAY 1197

Query: 404  NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             V++  LC +G L EA  ++  M + G++PDV  Y+SL+   CR   ++ AK++  +M+ 
Sbjct: 1198 TVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYR 1257

Query: 464  SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            SG   N   Y+ LI  F + G +  A++++  M   G   D  T   L+  LC++  L  
Sbjct: 1258 SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGE 1317

Query: 524  A 524
            A
Sbjct: 1318 A 1318



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 209/494 (42%), Gaps = 32/494 (6%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++Y S++        I +   ++ ++  + + L+  +Y  +I +  Q  N  +A  V+  
Sbjct: 1230 ITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY-- 1287

Query: 145  VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
               NC   G +   CN L++ L  DG +  A K    MS  G+  ++I +   I  +   
Sbjct: 1288 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 1347

Query: 203  AKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                   S  D++ K     +    GS     ++ G CKG  + EA K L+ L       
Sbjct: 1348 GDPLNAFSFFDDMIKCGQHPSFFTYGS-----LLKGLCKGGNLVEAKKFLNRLHYIPGAV 1402

Query: 260  DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL- 318
            D + Y  +  E    G++ E   +  K  +  V P +  Y   + GL  + +   A  L 
Sbjct: 1403 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 1462

Query: 319  GEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            G  +  G    +  +   L+  +S    P++A  FF  M++KG  P     + +  +  +
Sbjct: 1463 GTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSR 1522

Query: 378  RNKSDELVEVYKVLSANDYFTDME---------SYNVMVSFLCTSGRLREAYGVIQEMKR 428
            R +         ++ AND+F+ M          +YN+++        L     +   M R
Sbjct: 1523 RGQ---------MMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMR 1573

Query: 429  KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            +G+ PD   ++SL+    +  +     KL  +M   G   +  T+NILI+K+SE G++  
Sbjct: 1574 EGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRK 1633

Query: 489  ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
            A  L + M   GV PD  TY  +  GL +++  + +  V ++ + + V+   +   T + 
Sbjct: 1634 AFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLIN 1693

Query: 549  SLCRRGHFLVATKL 562
             +CR G    A KL
Sbjct: 1694 GMCRVGDIQGAFKL 1707



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 129/611 (21%), Positives = 236/611 (38%), Gaps = 88/611 (14%)

Query: 106  VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLA 162
            +LK+++   I+ +   Y  +I   ++      A  VFNE+ KF   D+ P     N+L+ 
Sbjct: 1076 LLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKF---DLSPNCVTYNALIG 1132

Query: 163  VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                 G  + AL++ D M   G+  + + +G  +   C++ K      +L+  R R N M
Sbjct: 1133 GHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLE--RMRVNDM 1190

Query: 223  INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            + G +   ++I G CK   ++EA +++  +      PD I Y  +   F  +G++   + 
Sbjct: 1191 VVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKE 1250

Query: 283  VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV- 341
            ++ +  + G+      Y   I        + EA ++  V+       D    N L+ S+ 
Sbjct: 1251 IICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLC 1310

Query: 342  ----------------------SSI-------------DPRSAIVFFNFMIEKGRVPTLS 366
                                  +SI             DP +A  FF+ MI+ G+ P+  
Sbjct: 1311 RDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFF 1370

Query: 367  TLSNLSKNLCKRNKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVI 423
            T  +L K LCK      LVE  K L+   Y     D   YN +++  C SG L EA  + 
Sbjct: 1371 TYGSLLKGLCK---GGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALF 1427

Query: 424  QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSE 482
             +M +  + PD   Y+SL+   CR+     A  L+      G    N   Y  L+   S+
Sbjct: 1428 DKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSK 1487

Query: 483  VGEIEGALRLFHNMLEKGVAPDA-----------------------------------TT 507
             G  + A   F  M++KG  PD                                     T
Sbjct: 1488 AGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLAT 1547

Query: 508  YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG-- 565
            Y  LL G  ++  L     +++  +   +   +    + ++ L + G   +  KLL    
Sbjct: 1548 YNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMI 1607

Query: 566  LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625
            +   L    +  IL+   +++ ++  A + + ++        ++    +F  L+  S   
Sbjct: 1608 MEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFR 1667

Query: 626  PILLLLHALQE 636
               ++LH + E
Sbjct: 1668 ESTVVLHEMLE 1678



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 2/231 (0%)

Query: 356  MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
            M E G VPT+ T + L    CK+ +    +E+   +       D+ +YNV +  LCT+ R
Sbjct: 1010 MEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHR 1069

Query: 416  LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              +AY ++++M+++ + P+   YN+L+    +E  +  A +++++M     S N  TYN 
Sbjct: 1070 SAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNA 1129

Query: 476  LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
            LI     VG+ E ALRL  +M   G+  +  TY +LL GLC+    + A  +  +   +D
Sbjct: 1130 LIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVND 1189

Query: 536  VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            +++     +  +  LC+ G    A +L+  +  D  + D  VI   SL + 
Sbjct: 1190 MVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPD--VITYSSLING 1238



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/524 (19%), Positives = 199/524 (37%), Gaps = 51/524 (9%)

Query: 122  YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
            Y  ++  L +G N  +A    N + +    +   + N+LLA     G +  A+ +FD+M 
Sbjct: 1372 YGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMV 1431

Query: 182  HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
               V   +  +   +   C   K    + +      R  ++    V+   ++ G  K   
Sbjct: 1432 QNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR-GTLFPNHVMYTCLVDGLSKAGH 1490

Query: 242  VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
             + AF   +E+  +   PD +A+  + +     G + +        R  GV P    Y  
Sbjct: 1491 PKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNI 1550

Query: 302  FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
             + G   ++ +     L   ++      D    ++LI G   S  P   +     MI +G
Sbjct: 1551 LLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEG 1610

Query: 361  RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             +    T + L     +  K  +  ++   ++    F D ++YN + + L      RE+ 
Sbjct: 1611 TLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFREST 1670

Query: 421  GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----------- 469
             V+ EM   G+ P  + Y +L+   CR   ++ A KL D+M A G   +           
Sbjct: 1671 VVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGL 1730

Query: 470  ------------------------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
                                    + T+  L+ +F    +I  AL+L   M   G+  D 
Sbjct: 1731 LHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDV 1790

Query: 506  TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-- 563
              Y  L+ G+C   +  AAFE++ +  + D+    +  +  + ++    + +   KLL  
Sbjct: 1791 VAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTD 1850

Query: 564  ---RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604
               RGL S  G S  H+         +E+ +A+  + +I+   P
Sbjct: 1851 LQERGLIS-WGGSTQHL--------DKELTVAMGKLNYIRCFYP 1885



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 101/204 (49%)

Query: 360  GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
            G  P++ T + +  ++ K  +++ +  +++ +S      ++ ++N++++ LC  G L++A
Sbjct: 944  GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 1003

Query: 420  YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
              ++++M+  G  P +  YN+L+   C++   + A +L D M   G   ++ TYN+ I  
Sbjct: 1004 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 1063

Query: 480  FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                     A  L   M ++ ++P+  TY +L+ G  +E  +  A +VFN+    D+   
Sbjct: 1064 LCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPN 1123

Query: 540  RSILSTFMISLCRRGHFLVATKLL 563
                +  +   C  G F  A +LL
Sbjct: 1124 CVTYNALIGGHCHVGDFEEALRLL 1147



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 85/191 (44%)

Query: 377  KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
            K    D  VE ++++    +   + + N++++ +    R    + + +EM  KG+ P+V 
Sbjct: 926  KEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVG 985

Query: 437  FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
             +N L+   C E  L+ A  L  QM  +G    + TYN L++ + + G  + A+ L   M
Sbjct: 986  TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM 1045

Query: 497  LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            + KG+  D  TY   ++ LC       A+ +  K     +       +T +    + G  
Sbjct: 1046 ICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 1105

Query: 557  LVATKLLRGLS 567
             VA ++   +S
Sbjct: 1106 GVAAQVFNEMS 1116



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 71/168 (42%)

Query: 403  YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            +++++      G +  A    + +   G  P V   N ++ +  ++        L+ +M 
Sbjct: 917  FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMS 976

Query: 463  ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              G   N+ T+NILI+     G ++ A  L   M E G  P   TY +LL   C++   +
Sbjct: 977  DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 1036

Query: 523  AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
            AA E+ +  +   +       + F+ +LC       A  LL+ +  ++
Sbjct: 1037 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM 1084



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 436  SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
            S ++ L+    +E ++  A + ++ +   G   ++ T N++++   +    E    LF  
Sbjct: 915  SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 974

Query: 496  MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            M +KG+ P+  T+  L+ GLC E NL+ A  +  +   +  +      +T +   C++G 
Sbjct: 975  MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 1034

Query: 556  FLVATKLL-----RGLSSDL 570
            +  A +L+     +G+ +D+
Sbjct: 1035 YKAAIELIDYMICKGIEADV 1054


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 11/401 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           L + +A     D  L +  +M  +G+  +     + I  FC   KL    S + ++ K  
Sbjct: 192 LFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLG 251

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E + I  S +    I+G C   RV EA +++D +     KPD I    +     L G  
Sbjct: 252 YEPNTITFSTL----INGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKE 307

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  +++ K  + G  P    Y   +  +    +   A EL   +      +D    + +
Sbjct: 308 AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 367

Query: 338 IGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I  +    S+D  +A   FN M  KG    + T + L    C   + D+  ++ + +   
Sbjct: 368 IDGLCKHGSLD--NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 425

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +++V++      G+LREA  + +EM  +G+ PD   Y SL++  C+E+ L  A
Sbjct: 426 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 485

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D M + GC  N++T+NILI+ + +   I+  L LF  M  +GV  D  TY +L++G
Sbjct: 486 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 545

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            C+   L  A E+F + V+  V          +  LC  G 
Sbjct: 546 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 586



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 178/406 (43%), Gaps = 47/406 (11%)

Query: 130 IQGKNTQKAFSVFNEVKFNCE----DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           + GK  +    +   V++ C+      GP     +L V+   G    A+++  +M  R +
Sbjct: 303 LSGKEAEAMLLIDKMVEYGCQPNAVTYGP-----VLNVMCKSGQTALAMELLRKMEERNI 357

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
           +   + + + I   C++  L    ++ +E+   E   I  ++I   ++I GFC   R ++
Sbjct: 358 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEM---EMKGITTNIITYNILIGGFCNAGRWDD 414

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
             K+L ++  R+  P+ + + ++ + F   G + E E + K+    G+AP T  Y   I 
Sbjct: 415 GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID 474

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G   E  + +A ++                                   + M+ KG  P 
Sbjct: 475 GFCKENHLDKANQM----------------------------------VDLMVSKGCDPN 500

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           + T + L    CK N+ D+ +E+++ +S      D  +YN ++   C  G+L  A  + Q
Sbjct: 501 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 560

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM  + + P++  Y  L++  C       A ++++++  S    ++  YNI+I       
Sbjct: 561 EMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 620

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +++ A  LF ++  KGV P   TY  ++ GLC++  L  A  +F K
Sbjct: 621 KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 666



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 190/442 (42%), Gaps = 40/442 (9%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y  +L  +  S Q      +L++++   I LD+  Y  II  L +  +  
Sbjct: 323 QPN----AVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD 378

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF++FNE++           N L+    + G  D+  K+  +M  R +  + + F V I
Sbjct: 379 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 438

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             F +  KL +   +  E+  R   +   ++    +I GFCK   +++A +++D +  + 
Sbjct: 439 DSFVKEGKLREAEELHKEMIHR--GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P+   + I+   +     + +   + +K    GV   T  Y   I G     ++  AK
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           EL                                  F  M+ +   P + T   L   LC
Sbjct: 557 EL----------------------------------FQEMVSRKVPPNIVTYKILLDGLC 582

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              +S++ +E+++ +  +    D+  YN+++  +C + ++ +A+ +   +  KG+ P V 
Sbjct: 583 DNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 642

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN ++   C++  L  A+ L+ +M   G + +  TYNILI      G+   +++L   +
Sbjct: 643 TYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 702

Query: 497 LEKGVAPDATTYTSLLEGLCQE 518
              G + DA+T   +++ L  +
Sbjct: 703 KRCGFSVDASTIKMVIDMLSDD 724



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 5/233 (2%)

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
            I    AI  F  MI    +PT+   S L   + K  + D ++ + K +       ++ +
Sbjct: 164 DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 223

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            ++M++  C   +L  A+  + ++ + G +P+   +++L+   C E  +  A +L D+M 
Sbjct: 224 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 283

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +L T N L++     G+   A+ L   M+E G  P+A TY  +L  +C+     
Sbjct: 284 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 343

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
            A E+  K    ++ L     S  +  LC+ G    A  L     ++G+++++
Sbjct: 344 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 396


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 130/591 (21%), Positives = 252/591 (42%), Gaps = 22/591 (3%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           L   L P +V RV+    ++   +A+ F+ WA  +P F H+  +   ++  L +      
Sbjct: 87  LHVDLDPFVVNRVLRS--ISDSEMAVRFYWWAESRPGFDHTQFAIAYVVSLLFVDSNFFL 144

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICNSLL 161
           +   L++V+   + L  S+YR ++   ++          F+E V   C + G +  N  +
Sbjct: 145 LSEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDY-NRFI 203

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
            VL  +   D   K +     +G   ++  +  +I   C++ ++  V  +L ++ K    
Sbjct: 204 GVLVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKF--G 261

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
                    + +   CK  R+ +A K L+ + IR   PD + Y  V           E  
Sbjct: 262 CFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAV 321

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
            + ++  + G+ P        I GL    ++ EA EL   ++S    ++  + NALI G 
Sbjct: 322 ELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGF 381

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN---KSDELVEVYKVLSANDYF 397
           + S     A    + M   G  P + T +    + C      ++++L+E  ++    +  
Sbjct: 382 LRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVN-- 439

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  SYN M+  LC + +L  A+G + +    G   D+   N L++A C+   +  A KL
Sbjct: 440 PDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKL 499

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M   G   +  TY  LI+    VG    A  +F  ML+  V P+   Y  +L  LC+
Sbjct: 500 FKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCK 559

Query: 518 ETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
               + A ++F     K V+ D++   +++  + +  C R   + A  L R +++     
Sbjct: 560 AGQFEQAQKIFLQMIQKEVSPDIITFNTLI--YWLGKCSRA--IEAIDLFRDMTARGIEP 615

Query: 574 DSHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS 622
           DS     L+  L +  +   A E  +++ E+   + +++S  L +   S++
Sbjct: 616 DSLTFRYLISGLLEEGKATQAYEVWEYMLENGIILDRDVSDRLISMFKSNN 666


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 209/489 (42%), Gaps = 36/489 (7%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           L  +++PS V+ + +  L  H   AL F  W SQ PNF H+  SY S+L  +   + ++ 
Sbjct: 62  LLPAITPSHVSSLFSLNLDPH--TALQFSYWISQTPNFKHNVDSYASLLTLIDHHKIVSD 119

Query: 103 IDSVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
           +  ++   +K      D+     I   + +   T+ +   +NE               LL
Sbjct: 120 VPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNE---------------LL 164

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
            +LA  G +D   +++ EM    V      F + I  +C   K+G V     E ++    
Sbjct: 165 TLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYC---KMGFV----KEAKQFMCK 217

Query: 222 MINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           MI   +      +   I G+C+ K V+ AF+V +E+  R    + ++Y  +       G 
Sbjct: 218 MIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGR 273

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E   +  + +     P    Y   I GL   + + +A  L + ++      D    N+
Sbjct: 274 IDEAVSLFVRMKDDCCYPNVYTYTALIKGL-CRKNVHKAMGLLDEMLERNLVPDLITYNS 332

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G   +    SA    + M E+G VP   T       LCK N+ +E   ++  L+   
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++  Y+V++   C  G++ EA  + ++M  K   P+   +N+L+   C    L+ A 
Sbjct: 393 VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEAL 452

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+DQM   G    + T+NILI +  + G+ + A +    M+  G  P A TY + +E  
Sbjct: 453 SLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVY 512

Query: 516 CQETNLQAA 524
           C    +Q A
Sbjct: 513 CSAGKVQEA 521



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 10/312 (3%)

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   + ++   +  MG V E +  + K  + G++P       FILG    + +  A  + 
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVF 250

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           E + +      + +++ L      ID   A+  F  M +    P + T + L K LC++N
Sbjct: 251 EEMPNRNEVSYNQLIHGLC-EAGRID--EAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN 307

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
               +  + ++L  N    D+ +YN +++  C +G L  AY ++  MK +GL PD   Y 
Sbjct: 308 VHKAMGLLDEMLERN-LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYG 366

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
             ++  C+ + +  A++L+D +   G S N+  Y++LI  + +VG+++ A  LF  ML K
Sbjct: 367 CFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSK 426

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR---RGHF 556
             +P+A T+ +L+ GLC   NL+ A  +F++ V    M  +  + TF I + R   +G F
Sbjct: 427 NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVK---MGLKPTVYTFNILIGRMLKQGDF 483

Query: 557 LVATKLLRGLSS 568
             A K L+ + S
Sbjct: 484 DDAHKCLQKMMS 495



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 114/528 (21%), Positives = 208/528 (39%), Gaps = 62/528 (11%)

Query: 51  LVARVINPYLLTHHSLALGF---------FNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           ++   ++P   T  S  LG+         F    + PN   + +SY+ ++  L  + +I+
Sbjct: 218 MIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPN--RNEVSYNQLIHGLCEAGRID 275

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NS 159
              S+  ++K +    +   Y  +I  L + KN  KA  + +E+     ++ P++   NS
Sbjct: 276 EAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLE--RNLVPDLITYNS 332

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+A     G++D+A ++   M  RG+      +G FI   C++ ++ +   + D + + E
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTE-E 391

Query: 220 NSMINGSVIAVLI----------------------------------IHGFCKGKRVEEA 245
               N  + +VLI                                  IHG C    ++EA
Sbjct: 392 GVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEA 451

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             + D++     KP    + I+       G   +    L+K    G  P    Y  FI  
Sbjct: 452 LSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEV 511

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPT 364
                ++ EA+++   +       DD    +LI +   +    SA      M +    P+
Sbjct: 512 YCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPS 571

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV--MVSFLCTSGRLREAYGV 422
             T  +L K L  +    E      V S ++ F D+   N+  M+ F            +
Sbjct: 572 HHTFLSLIKQLFDKRYVVEKSGETGVESVSN-FGDVPGSNMWKMMEF-------DIVIEL 623

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM++ G  PD   Y  L+   C+ + L  A KL DQM   G S +   +N +IS   +
Sbjct: 624 FEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK 683

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           + +   A  +  +M+  G +P      +L+ GL +E   +    VF K
Sbjct: 684 LQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKK 731



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/375 (19%), Positives = 154/375 (41%), Gaps = 31/375 (8%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           ++  +  +I  L    N ++A S+F++ VK     + P +   N L+  +   G  D+A 
Sbjct: 431 NAYTFNALIHGLCSAGNLKEALSLFDQMVKMG---LKPTVYTFNILIGRMLKQGDFDDAH 487

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           K   +M   G +     +  FI  +C   K+ +   M+  V+ +E  +         +I 
Sbjct: 488 KCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMM--VQMKEEGVPPDDFTYTSLIK 545

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV-- 292
            + K      AF VL  +   +C+P    +        L+  +F++  V++K  + GV  
Sbjct: 546 AYGKLGLTYSAFDVLKSMFDADCEPSHHTF------LSLIKQLFDKRYVVEKSGETGVES 599

Query: 293 ------APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
                  P +N ++     +++E        L E +     T D      LI  +  ++ 
Sbjct: 600 VSNFGDVPGSNMWKMMEFDIVIE--------LFEEMEKHGCTPDSKCYEKLISGICKVEN 651

Query: 347 RS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A+   + M ++G  P+    + +    CK  K  E   + + +  + +   +E    
Sbjct: 652 LGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKT 711

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++  L   G       V ++++  G + D   +  L++   ++ L+    +L+++M  +G
Sbjct: 712 LICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771

Query: 466 CSGNLKTYNILISKF 480
           C+ + +TY+IL  K 
Sbjct: 772 CNFSPRTYSILTQKL 786



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 135/358 (37%), Gaps = 7/358 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L S G +  AL +FD+M   G++ +   F + I +  +          L ++  
Sbjct: 436 NALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMS 495

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                +  +  A   I  +C   +V+EA  ++ +++     PD   Y  + + +  +G  
Sbjct: 496 SGEKPVARTYNA--FIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLT 553

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
           +    VLK        P  + +   I  L  +R + E    GE  V       D V  + 
Sbjct: 554 YSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKS--GETGVESVSNFGD-VPGSN 610

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           +  +   D    I  F  M + G  P       L   +CK       +++   +      
Sbjct: 611 MWKMMEFD--IVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGIS 668

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
                +N ++S  C   +  EA  ++++M   G  P +    +L+     E        +
Sbjct: 669 PSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSV 728

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + ++   G + +   + ILI    + G +E   +LF  M + G      TY+ L + L
Sbjct: 729 FKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786


>gi|222622724|gb|EEE56856.1| hypothetical protein OsJ_06476 [Oryza sativa Japonica Group]
          Length = 538

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 191/420 (45%), Gaps = 16/420 (3%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG-----PEI-C-NSLLAVLASDGYIDNAL 174
           Y   + +L    +  +  +VF E+K    D G     P + C N+L+  LA  G    AL
Sbjct: 55  YNVAMKALALAGDLDEVVAVFAELKRTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 114

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           K FDEM   GV  +     + I      ++      ++ +     +     ++IA     
Sbjct: 115 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIA----- 169

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G C+  ++ EA+ VLD +  + C+P    Y  + + +   G + E ++++ +  +LG  P
Sbjct: 170 GLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 229

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   I  L  + +  E +++     +  +       N  + G       + A+   
Sbjct: 230 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 289

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M+ +G  PT  T S L   LC  ++  + + + +  +   ++  + +YN ++S LC  
Sbjct: 290 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 349

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+ R    ++ +M +KG++P+   +N L+ + C       AK L   + + G + N+ TY
Sbjct: 350 GKWRGIMKLLTDMIKKGIEPNTRTFNILIRSLCVGGKSSLAKSL---IHSLGFAANVVTY 406

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           NIL+  F   G++  A RL   M EK +APD  TYT +++GLC+E    AA   F KS+ 
Sbjct: 407 NILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLT 466



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 38/250 (15%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+  G  P  S+ + L K   +R++ D     ++++  +    D+ +Y+ +++
Sbjct: 113 ALKAFDEMLASGVAPNASSQNILIKMHARRSEFDL---AWELIHKSGVEPDVGTYSTLIA 169

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G++ EA+GV+  M  K   P V  Y  +++A CR+  +  AK L  +M   GC  
Sbjct: 170 GLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 229

Query: 469 NLKTYNILI------SKFSEV-----------------------------GEIEGALRLF 493
           N+ TYN+LI       KF EV                             G+ + AL L 
Sbjct: 230 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 289

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             ML +G+ P A T++ LL  LC  + L  A  +  +S            +T M SLC  
Sbjct: 290 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 349

Query: 554 GHFLVATKLL 563
           G +    KLL
Sbjct: 350 GKWRGIMKLL 359


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 202/476 (42%), Gaps = 4/476 (0%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S  S ++IL +L    +   +   LK+    K  LD +    ++ SL       KA 
Sbjct: 191 FKASLFSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAE 250

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           S+  ++K NC        N++L      G   +AL++ D+M   G+E     + + I K 
Sbjct: 251 SMLQKMK-NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKL 309

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+  +  +   +L   R RE ++         +IHGF    ++  A  + +++  +  KP
Sbjct: 310 CKLKRSARAYLLLK--RMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKP 367

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
               Y  + + +   G   E   VL + +  GV P    Y   + G     ++  A +L 
Sbjct: 368 SVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLI 427

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + + S   +I+  +   LI     +   S A      M+  G  P + T S L   +CK 
Sbjct: 428 KYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKM 487

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
               E  E+   +  +    +   Y  +V + C +G  +EA     ++ R GL  +   +
Sbjct: 488 GMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIH 547

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+L+ +  RE ++  A++    M     S ++ ++N +I  + + G +  A  ++ NM+ 
Sbjct: 548 NALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVR 607

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            G  PD  TY SLL GLCQ  +L  A E     +     +    L+T ++ +C+ G
Sbjct: 608 HGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHG 663



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 196/451 (43%), Gaps = 15/451 (3%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAV 163
           +LK+++   +T D   Y  +I           A  +FN++    + + P +    +L+  
Sbjct: 321 LLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLR--QSLKPSVATYTALIDG 378

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
              +G  D A ++  EM   GV  S + +   +  +C+++KLG  L ++  +R R  S I
Sbjct: 379 YCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSIS-I 437

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
           N ++  +LI  GFC+   V +A ++L  +      PD I Y  +      MG + E + +
Sbjct: 438 NRTMYTILI-DGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEI 496

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L + +K GV P    Y   +          EA +    I       +  + NAL+ S   
Sbjct: 497 LSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFY- 555

Query: 344 IDPRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
              R  ++     F  +M        +++ + +  + C+R    E   VY  +  + +  
Sbjct: 556 ---REGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPP 612

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +Y  ++  LC  G L +A   +  +  K    D    N+L+   C+   L  A  L 
Sbjct: 613 DICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLC 672

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M       +  TY IL+  F + G++  AL L   MLEKG+ PD   YT LL GL  E
Sbjct: 673 EKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNE 732

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             ++AA  +F + +  + + A  I    M++
Sbjct: 733 GQVKAASYMFQEIICKEGLYADCIAYNSMMN 763



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/496 (20%), Positives = 211/496 (42%), Gaps = 10/496 (2%)

Query: 43  LRDSLSPSLVAR--VINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI 100
           LR SL PS+     +I+ Y     +       +  Q      S L+Y ++L       ++
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKL 420

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
                ++K ++   I+++ ++Y  +I    Q     KA  +   +    + I P++   +
Sbjct: 421 GPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCML--ADGIDPDVITYS 478

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  +   G I    ++   M   GV  + + +   ++ FC+     + L    ++ + 
Sbjct: 479 ALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYR- 537

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            + ++  SVI   ++  F +   + EA +    +   +   D  ++  + + +   G+V 
Sbjct: 538 -SGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVL 596

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL- 337
           E   V     + G  P    Y   + GL     + +AKE    ++     ID+  LN L 
Sbjct: 597 EAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLL 656

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           +G         A+     M+ +  +P   T + L    CKR K    + + +++      
Sbjct: 657 VGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLV 716

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
            D  +Y  +++ L   G+++ A  + QE+  ++GL  D   YNS+M    +   +   ++
Sbjct: 717 PDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIER 776

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   M  +    +  +YNIL+  + + G++   L L+ +M+++G+ PD  TY  L+ GLC
Sbjct: 777 LMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLC 836

Query: 517 QETNLQAAFEVFNKSV 532
           +   ++ A +   K V
Sbjct: 837 EYGLIEIAVKFLEKMV 852



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 152/399 (38%), Gaps = 72/399 (18%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN++L  L      +       E   R          + +   C   KL +  SML   +
Sbjct: 198 CNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESML---Q 254

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K +N  +  +V    I++ + K  R + A ++LD++     + D   Y I+ ++   +  
Sbjct: 255 KMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKR 314

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                ++LK+ R++ + P    Y   I G   E               GK  +       
Sbjct: 315 SARAYLLLKRMREVNLTPDECSYNTLIHGFFGE---------------GKINL------- 352

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       AI  FN M+ +   P+++T                             
Sbjct: 353 ------------AIYIFNQMLRQSLKPSVAT----------------------------- 371

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
                 Y  ++   C +GR  EA  V+ EM+  G+ P    Y++L+   C+   L PA  
Sbjct: 372 ------YTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALD 425

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   + +   S N   Y ILI  F ++GE+  A ++   ML  G+ PD  TY++L+ G+C
Sbjct: 426 LIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMC 485

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           +   +    E+ ++     V+    + +T +   C+ GH
Sbjct: 486 KMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGH 524



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 169/412 (41%), Gaps = 53/412 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++      G +  A  ++D M   G       +G  +   C+   L Q    +  + +
Sbjct: 583 NCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLE 642

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +  ++   ++  +L+  G CK   ++EA  + +++  R   PD   Y I+ + F   G V
Sbjct: 643 KACAIDEKTLNTLLV--GICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKV 700

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNA 336
               ++L+   + G+ P T  Y   + GL+ E ++  A  +  E+I       D    N+
Sbjct: 701 VPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNS 760

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           ++               N  ++ G++                   +E+  + + +  N+ 
Sbjct: 761 MM---------------NGYLKGGQI-------------------NEIERLMRNMHENEV 786

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           +    SYN+++      G+L     + ++M ++G+ PD   Y  L+   C   L+  A K
Sbjct: 787 YPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVK 846

Query: 457 LWDQMFASGCSGNLKTYNILISKFSE----------------VGEIEGALRLFHNMLEKG 500
             ++M   G   +   ++ILI  FSE                VG+I+GA  L  +M   G
Sbjct: 847 FLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALG 906

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           V P     +S++ GLC+   ++ A  VF+  +   ++   +  +T M  LC+
Sbjct: 907 VVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCK 958



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 187/465 (40%), Gaps = 61/465 (13%)

Query: 114  KITLDSSVYRFIIPSLIQGKNTQKAFSVF-NEVKFNCEDIGPEIC--------------- 157
            KI+ D + +  II S  Q  N  +AFSV+ N V+       P+IC               
Sbjct: 574  KISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWP---PDICTYGSLLRGLCQGGHL 630

Query: 158  ----------------------NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
                                  N+LL  +   G +D AL + ++M  R +   T  + + 
Sbjct: 631  VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 690

Query: 196  IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
            +  FC+  K+   L +L  +   E  ++  ++    +++G     +V+ A  +  E+  +
Sbjct: 691  LDGFCKRGKVVPALILLQMML--EKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICK 748

Query: 256  E-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
            E    D IAY  +   +   G + E E +++   +  V P +  Y   + G I + ++  
Sbjct: 749  EGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSR 808

Query: 315  AKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
               L   +V      D+     LI  +        A+ F   M+ +G  P       L K
Sbjct: 809  TLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIK 868

Query: 374  NLCKRNKSDELVEVYKVL-------SANDYFTDMESYNV---------MVSFLCTSGRLR 417
               +++K    ++++  +        A +   DM++  V         +V  LC  G++ 
Sbjct: 869  AFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVE 928

Query: 418  EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            EA  V   + R G+ P ++ + +LM   C+E  +  A  L   M + G   ++ TYN+LI
Sbjct: 929  EAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLI 988

Query: 478  SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            +       I  AL L+  M  KG+ P+ TTY +L   +     +Q
Sbjct: 989  TGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQ 1033



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 110/244 (45%)

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           KF +D    N ++ S+ +    S        ++  R+P   T + +     K+ +    +
Sbjct: 225 KFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSAL 284

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +   +  N    D+ +YN+M+  LC   R   AY +++ M+   L PD   YN+L+   
Sbjct: 285 RILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGF 344

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
             E  +  A  +++QM       ++ TY  LI  +   G  + A R+ + M   GV P  
Sbjct: 345 FGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSE 404

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TY++LL G C+ + L  A ++     +  + + R++ +  +   C+ G    A ++L+ 
Sbjct: 405 LTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKC 464

Query: 566 LSSD 569
           + +D
Sbjct: 465 MLAD 468



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           D ++NA +     +D  +AI F   M E G   +L + +N+   L   NKS+ +    K 
Sbjct: 164 DLLVNAYVKEGKVLDAAAAIFF---MDECGFKASLFSCNNILNALVGINKSEYVWLFLKE 220

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                +  D+ + N++++ LCT G+L +A  ++Q+MK   L P+   YN+++    ++  
Sbjct: 221 SLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGR 279

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
            + A ++ D M  +G   +L TYNI+I K  ++     A  L   M E  + PD  +Y +
Sbjct: 280 CKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNT 339

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS--- 567
           L+ G   E  +  A  +FN+ +   +  + +  +  +   CR G    A ++L  +    
Sbjct: 340 LIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITG 399

Query: 568 ---SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAELFASLSSS 621
              S+L +S     LL       ++  A++ IK+++  S ++   +  I  + F  L   
Sbjct: 400 VRPSELTYS----ALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEV 455

Query: 622 SYPEPIL 628
           S  + IL
Sbjct: 456 SKAKQIL 462


>gi|115445813|ref|NP_001046686.1| Os02g0321000 [Oryza sativa Japonica Group]
 gi|113536217|dbj|BAF08600.1| Os02g0321000 [Oryza sativa Japonica Group]
          Length = 542

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 191/420 (45%), Gaps = 16/420 (3%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG-----PEI-C-NSLLAVLASDGYIDNAL 174
           Y   + +L    +  +  +VF E+K    D G     P + C N+L+  LA  G    AL
Sbjct: 59  YNVAMKALALAGDLDEVVAVFAELKRTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 118

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           K FDEM   GV  +     + I      ++      ++ +     +     ++IA     
Sbjct: 119 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIA----- 173

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G C+  ++ EA+ VLD +  + C+P    Y  + + +   G + E ++++ +  +LG  P
Sbjct: 174 GLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 233

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   I  L  + +  E +++     +  +       N  + G       + A+   
Sbjct: 234 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 293

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M+ +G  PT  T S L   LC  ++  + + + +  +   ++  + +YN ++S LC  
Sbjct: 294 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 353

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+ R    ++ +M +KG++P+   +N L+ + C       AK L   + + G + N+ TY
Sbjct: 354 GKWRGIMKLLTDMIKKGIEPNTRTFNILIRSLCVGGKSSLAKSL---IHSLGFAANVVTY 410

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           NIL+  F   G++  A RL   M EK +APD  TYT +++GLC+E    AA   F KS+ 
Sbjct: 411 NILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLT 470



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 38/250 (15%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+  G  P  S+ + L K   +R++ D     ++++  +    D+ +Y+ +++
Sbjct: 117 ALKAFDEMLASGVAPNASSQNILIKMHARRSEFDL---AWELIHKSGVEPDVGTYSTLIA 173

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC +G++ EA+GV+  M  K   P V  Y  +++A CR+  +  AK L  +M   GC  
Sbjct: 174 GLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLP 233

Query: 469 NLKTYNILI------SKFSEV-----------------------------GEIEGALRLF 493
           N+ TYN+LI       KF EV                             G+ + AL L 
Sbjct: 234 NVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELL 293

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             ML +G+ P A T++ LL  LC  + L  A  +  +S            +T M SLC  
Sbjct: 294 DVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCEM 353

Query: 554 GHFLVATKLL 563
           G +    KLL
Sbjct: 354 GKWRGIMKLL 363


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/524 (24%), Positives = 206/524 (39%), Gaps = 92/524 (17%)

Query: 66  LALGFFNW-ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN----------- 113
           L+   F W  S  PN+ HS  S  ++L  L+  +      + L+ +              
Sbjct: 65  LSWALFKWIESSVPNYKHSLQSSWTMLYILTKHKHFKTAHAFLENIAFKDFLSTQSVLSS 124

Query: 114 --KITLDSSVYRFIIPSLI----QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
             KI  D  V   ++  L+      K T +A  VF  ++ N        C  LL  LA D
Sbjct: 125 LVKIHDDPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKD 184

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
              D   K++ +M                       KLG V               N  V
Sbjct: 185 RLTDTVWKIYKKM----------------------VKLGVV--------------ANIHV 208

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
             VL+ H  CK   VE+A KVL E+ ++   PD   Y  +   +   G  +E   V  + 
Sbjct: 209 YNVLL-HACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRM 267

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
              G++P    Y   I G   E R+ EA +L                             
Sbjct: 268 EMAGISPDIFTYNSLIYGFCREGRMREAVQL----------------------------- 298

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                  F   K   P   T ++L    C+ N  DE + + +V+S    +  + +YN ++
Sbjct: 299 -------FRDIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSIL 351

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  GRLR+A  ++ EM  + ++PD    N+L+ A C+   +R A K+ D+M  +G  
Sbjct: 352 RKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLK 411

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  TY  LI  F +  EI+ A  L   M++ G +P   TY+ L++  C++ N +A  ++
Sbjct: 412 LDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKL 471

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
            ++ V   + +  S+    +   C+      A ++L GL  D G
Sbjct: 472 PDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVL-GLMKDKG 514



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 168/411 (40%), Gaps = 16/411 (3%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L SL+  R  + +  + K++    +  +  VY  ++ +  +  + +KA  V +E++  C
Sbjct: 177 LLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKC 236

Query: 150 EDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
             + P++   N+L+++    G    AL + D M   G+      +   I+ FC   ++ +
Sbjct: 237 --VFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMRE 294

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            + +  +++     +    V    +I G+C+   ++EA ++ + +  +   P  I Y  +
Sbjct: 295 AVQLFRDIK----DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSI 350

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
             +    G + +  ++L +  +  + P        I        +  A ++ + +V    
Sbjct: 351 LRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGL 410

Query: 328 TIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
            +D     ALI        ID    ++F   M++ G  P+  T S L  + CK+   + +
Sbjct: 411 KLDQFTYKALIHGFCKAKEIDKAKELLFG--MMDAGFSPSYCTYSWLVDSYCKQQNEEAV 468

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +++   L       D+  Y  ++   C   ++  A  V+  MK KG+  D   Y SL   
Sbjct: 469 IKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYG 528

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             +   +     + D+M+       LK Y    + ++    I   L LF N
Sbjct: 529 YWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSI---LSLFWN 576


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 183/391 (46%), Gaps = 11/391 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++  L  +G +D A   + EM  R V    + +   I    +   + + + +L  V  
Sbjct: 15  NTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL-TVMV 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             N     S     I+HG+C   + E+A  +  ++     +PD + Y  + +     G  
Sbjct: 74  MPNCFTYNS-----IMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKC 128

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +     K G+ P    Y   + G   +  + E  +L  ++V     +D  V N L
Sbjct: 129 TEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNIL 188

Query: 338 IGSVSSIDPRSAIVF-FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I + +  +    +V  F+ M ++G  P       +   LCK  + D+ +  ++ +     
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++  Y  ++  LCT  +  +A  +I E+  +G++P++ F+N+++++ C+E  +  +KK
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+D +   G + ++ TY+ LI  +   G+++GA++L   M+  G+ PD+ TY++L+ G C
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYC 368

Query: 517 QETNLQAAFEVFNK----SVNHDVMLARSIL 543
           +   ++ A  +F +     VN D++    IL
Sbjct: 369 KINRMEDALALFKEMESNGVNPDIITYNIIL 399



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 196/467 (41%), Gaps = 45/467 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN- 143
           +SY++I+  L     ++       ++   +++ D+  Y  II +L + +   +A  V   
Sbjct: 12  VSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTV 71

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
            V  NC        NS++    S G  + A+ +F +M   G+E   + +   +   C+N 
Sbjct: 72  MVMPNCFTY-----NSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNG 126

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           K  +   + D + KR   +         ++HG+     + E   +L  +     + D   
Sbjct: 127 KCTEARKIFDSMVKR--GLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           + I+   +     V E  +V  K R+ G+ P   +YR  I GL      C+   L     
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGL------CKLGRL----- 233

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                 DD +LN                 F  MI+KG  P +   ++L   LC  +K ++
Sbjct: 234 ------DDAMLN-----------------FEQMIDKGLTPNVVVYTSLIHALCTYDKWEK 270

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             E+   +       ++  +N ++  LC  GR+ E+  +   +   G++PDV  Y++L++
Sbjct: 271 AEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLID 330

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C    +  A KL   M + G   +  TY+ LI+ + ++  +E AL LF  M   GV P
Sbjct: 331 GYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNP 390

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           D  TY  +L GL +     AA E++ +       L    LST+ I L
Sbjct: 391 DIITYNIILHGLFRTRRTAAAKELYARITESGTQLE---LSTYNIIL 434



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 17/336 (5%)

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C PD ++Y  + +     G V +  +   +     V+P    Y   I  L   + +  A 
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E+  V+V       + +++   G  SS     AI  F  M   G  P + T ++L   LC
Sbjct: 67  EVLTVMVMPNCFTYNSIMH---GYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLC 123

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  K  E  +++  +       D+ +Y  ++    + G L E + ++  M + G+  D  
Sbjct: 124 KNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHH 183

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +N L+ A  +++ +     ++ +M   G + N   Y  +I    ++G ++ A+  F  M
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAA----FEVFNKSVNHDVMLARSILSTFMISLCR 552
           ++KG+ P+   YTSL+  LC     + A    FE+ ++ +N +++   +IL     SLC+
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILD----SLCK 299

Query: 553 RGHFLVATKLLRGLSSDLGH--SDSHVILLKSLADA 586
            G  + + KL       LGH   +  VI   +L D 
Sbjct: 300 EGRVIESKKLF----DLLGHIGVNPDVITYSTLIDG 331


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 208/495 (42%), Gaps = 43/495 (8%)

Query: 83  SPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           SP+ +  +LK L   R+  +A+D VL+++       D   Y  ++  L   K +Q+A  +
Sbjct: 133 SPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDL 192

Query: 142 FN---EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            +   + K  C  +      +++  L  +G +D A  +FD M  RG     + +   I  
Sbjct: 193 LHIMADHKGRCP-LDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISA 251

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             +   + +   +    R  +N ++   ++   ++HG+C   + +EA  +  ++     +
Sbjct: 252 LSKTQAMDKATQVF--TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVE 309

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD + Y  + +     G   E   +     K G  P +  Y   + G   E  + E  +L
Sbjct: 310 PDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDL 369

Query: 319 GEVIVSGKFTIDDDVLNALIGSVS------------------SIDPR------------- 347
            ++++     +   + N ++G+ +                   ++P              
Sbjct: 370 LDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCT 429

Query: 348 -----SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                 A+  FN +  +G  P +   + L   LC  +K D++ E+   +       D   
Sbjct: 430 AGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIF 489

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N ++  LC  GR+ EA  +   M R G++P+ + YN+L++  C +  +  A KL   M 
Sbjct: 490 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 549

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            +G   +  TYN +I+ +S+ G IE  L L   M  KGV P   TY  LL+GL Q     
Sbjct: 550 FNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTV 609

Query: 523 AAFEVFNKSVNHDVM 537
           AA E++ + +  D +
Sbjct: 610 AAKELYLRMIKWDTV 624



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 172/404 (42%), Gaps = 14/404 (3%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +D A      +   G+  S I F   +   C+  +    + ++  +R+         +
Sbjct: 113 GRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIV--LRRMPELGCKPDL 170

Query: 228 IA-VLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            +  +++ G C  K  ++A  +L  +   +  C  D +AY  V       G + +   + 
Sbjct: 171 FSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLF 230

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
                 G +P    Y   I  L   + + +A ++   +V      D  +  +L+ G  SS
Sbjct: 231 DAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 290

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
             P+ AI  F  M   G  P + T + L   LCK  KS E  +++  L    +  D  +Y
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++    T G L E + ++  M +KG+      +N +M A  + + +  A  ++  M  
Sbjct: 351 GTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ 410

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ET 519
            G + ++  Y  ++      G ++ AL  F+++  +G+AP+   +T+L+ GLC     + 
Sbjct: 411 QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDK 470

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             + AFE+ ++ +  D +   +I+     +LC++G  + A  L 
Sbjct: 471 VEELAFEMIDRGICLDTIFFNAIMG----NLCKKGRVIEAKNLF 510


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 9/392 (2%)

Query: 159 SLLAVLASDGYIDNALKMFDEM----SHRGVEFS--TIGFGVFIWKFCENAKLGQVLSML 212
           +L+  L   G I  ALK+  EM    S  G+ F    I + + I   C++ +  +   + 
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           +E++ +   M    +    +IHGFC G + EEA ++ +E+  +  +P+ + + ++ +   
Sbjct: 266 EEMKVQ--GMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLC 323

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G V E + +L+   + G+ P    Y   I G  +   +  A+EL   + S     D  
Sbjct: 324 KEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVI 383

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
               LI G   +     A+  +N M++ G+ P + T   L   L +  K  +  +++ V+
Sbjct: 384 CYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM 443

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+  Y + ++ LC +G L EA  +  ++K   +  D+  +N L++  C+   L
Sbjct: 444 KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL 503

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +L++++       ++ TYNI+I +F   G++  A  LF  M + G  PD  TY +L
Sbjct: 504 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           + G  +   L+   E+ +  V  DV L  +IL
Sbjct: 564 IRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 595



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 206/490 (42%), Gaps = 17/490 (3%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL+ LA   +      ++++M   G+        + +   C   ++G+ L+++  + +R 
Sbjct: 102 LLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR- 160

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
              I   V    +I G C   R+ +A  +   ++   C P+ I Y  + +     G++  
Sbjct: 161 -GYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI-- 217

Query: 280 REVVLKKKRKL---------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
             + LK  +++            P    Y   I  L  +RR  EA++L E +     T  
Sbjct: 218 -SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPT 276

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                +LI G         A   FN M+ +G  P + T + L   LCK  K  E  ++ +
Sbjct: 277 VISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLE 336

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           V+       ++ +YN ++   C  G L  A  +   M  KG +PDV  Y  L+   C+  
Sbjct: 337 VMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTS 396

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A KL++ M   G   ++KTY  L++   + G++  A +LF  M   G+  D   Y 
Sbjct: 397 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 456

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             L GLC+   L  A E+FNK  ++++ L     +  +  LC+ G    A +L   L  +
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE 516

Query: 570 LGHSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627
               D  ++ I++       +V  A    + ++++  T  +   A L      S   E +
Sbjct: 517 ELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKV 576

Query: 628 LLLLHALQEK 637
           + LLH + ++
Sbjct: 577 VELLHMMVQR 586



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 49/297 (16%)

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +I    A  FF+ M+     P LS+ ++L   L K     ++  +Y  +  +    D  
Sbjct: 73  GNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCC 132

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           + N++++ LC   R+ E   V+  + R+G  PD+  Y +L++  C E  +  A  L+ +M
Sbjct: 133 TLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM 192

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE----------------------- 498
              GC+ N  TY  L+      G I  AL+L   ML                        
Sbjct: 193 QKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDAL 252

Query: 499 ------------------KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
                             +G+ P   +YTSL+ G C     + A  +FN+ VN  V    
Sbjct: 253 CKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNV 312

Query: 541 SILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHV---ILLKSLADAREV 589
              +  +  LC+ G  + A  LL     RG+  +L   +S +    L+  L  ARE+
Sbjct: 313 VTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 369



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 50/373 (13%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           NF    +SY  I+ +L   R+ +    + +++KV  +T     Y  +I     G   ++A
Sbjct: 237 NFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEA 296

Query: 139 FSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             +FNE+    + + P +   N L+ VL  +G +  A  + + M  RG+  + + +   I
Sbjct: 297 KRLFNEMVN--QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 354

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGS-----VIAVLIIHGFCKGKRVEEAFKVLDE 251
             FC       ++  L+  R+   SM +       +   ++I+G+CK  +VEEA K+ + 
Sbjct: 355 EGFC-------LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 407

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +     +PD   Y  +       G V + + +    +  G+      Y  F+ GL     
Sbjct: 408 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 467

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
           + EA EL   + S    +D +  N LI                                 
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLI--------------------------------- 494

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
              LCK  K +   E+++ L   +   D+ +YN+M+   C  G++ +A  + Q+M++ G 
Sbjct: 495 -DGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGC 553

Query: 432 DPDVSFYNSLMEA 444
            PD   Y +L+  
Sbjct: 554 TPDKITYATLIRG 566


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 126/597 (21%), Positives = 251/597 (42%), Gaps = 41/597 (6%)

Query: 33  LLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILK 92
           L+ ++  Q       SPSL    INP  LTH  +     + A +  +     LS+ + + 
Sbjct: 73  LVCESYQQTSFSKPSSPSLNLE-INPNSLTHEQVITVVASLAQEAGSVV--SLSFFNWVI 129

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLD--SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150
             S  R    +  V     +N   LD  + V + ++ S  +    ++A ++  E++ +  
Sbjct: 130 GFSKFRHFMRLYIVCATTFLNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGL 189

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            +   I N ++ V  + G++D A K+FDEM  R V   +  + + +  +C   ++  V  
Sbjct: 190 VLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDR 249

Query: 211 MLDEVRKRENSMINGSVIAVL---------------------------------IIHGFC 237
            L ++ +R  ++ N +   ++                                 +I+G C
Sbjct: 250 WLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLC 309

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRT 296
           K   +++AF++L+E+  +  KP+   +  + +     G   +   + LK  R     P  
Sbjct: 310 KIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 369

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G   E ++  A+ L   +       + +    LI G   + +   A    + 
Sbjct: 370 YTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDL 429

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M ++G  P + T + +   LCK+ +  E  ++ +    +    D  +Y +++S  C    
Sbjct: 430 MGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTD 489

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
            ++A  +   M + GL PD+  YN L+   CR+  +  ++KL+++    G     +TY  
Sbjct: 490 NKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTS 549

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I  +   G I  A++ FH M + G  PD+ TY +L+ GLC E+ L  A +++   +++ 
Sbjct: 550 MICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNG 609

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
           +        T     C++G    A  +L  L   L     +  L++ L   ++V +A
Sbjct: 610 LSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNT-LIRKLCSEKKVGVA 665



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 183/450 (40%), Gaps = 38/450 (8%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-V 215
           C  +++  +  G+++ A   F +    G+  + I F   I   C+   + Q   ML+E V
Sbjct: 266 CTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMV 325

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLM 274
           RK     +        +I G CK    E+AF++  +L R    KP+   Y  +   +   
Sbjct: 326 RKGWKPNV---YTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKE 382

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             +   E++L + ++ G+ P TN Y   I G         A EL +++    FT +    
Sbjct: 383 EKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTY 442

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NA+I G         A       ++ G      T + L    C++  + + + ++  +  
Sbjct: 443 NAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFK 502

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                DM +YNV+++  C   ++ E+  + +E    GL P    Y S++   CR+  +  
Sbjct: 503 VGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISS 562

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP---------- 503
           A K + +M   GC  +  TY  LIS      +++ A +L+  M++ G++P          
Sbjct: 563 AIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAY 622

Query: 504 -------DAT---------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
                   AT               T  +L+  LC E  +  A   F+K ++ D+ + R 
Sbjct: 623 EYCKQGDSATAMIILERLEKKLWIRTVNTLIRKLCSEKKVGVAALFFHKLLDKDLNVDRI 682

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
            L+ F  +      F + + L   +S  +G
Sbjct: 683 TLAAFTTACYESNKFALVSDLSERISKGIG 712


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 120/527 (22%), Positives = 224/527 (42%), Gaps = 11/527 (2%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  +  L LR SL PS V  V+         +AL FF WA +Q  + H P+ Y+S
Sbjct: 157 WNPKHEGQMRNL-LR-SLKPSQVCAVLRSQ--DDERVALKFFYWADRQWRYRHDPMVYYS 212

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L+ LS ++       VL  +K   I      +  ++ S  +    + A  V   ++   
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    ICN+ + V      ++ AL+  + M   G+  + + +   I  +C+  ++ + +
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVA 268
            +L+++  +    +   V    I+   CK KR+ E   ++ ++ +     PD + Y  + 
Sbjct: 333 ELLEDMHSK--GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
                     E    LK  ++ G       Y   +  L  E R+ EAK+L  E+      
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDV 450

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                V+N     +  +D   A      M   G  P   + + L   +C+  KS E  E+
Sbjct: 451 VTYTAVVNGFC-RLGEVD--KAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREM 507

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
             +   + +  +  +Y+V++  L   G+L EA  V++EM  KG  P     N L+++ CR
Sbjct: 508 MNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCR 567

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           +     A+K  ++    GC+ N+  +  +I  F +  E++ AL +  +M       D  T
Sbjct: 568 DGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFT 627

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           YT+L++ L ++  +  A E+  K ++  +        T +   C+ G
Sbjct: 628 YTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMG 674



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 177/417 (42%), Gaps = 26/417 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+ +L    + D AL    +   +G     +G+   +   C+  ++ +   +++E+  
Sbjct: 387 NTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM-- 444

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                    V    +++GFC+   V++A K+L  +     KP+ ++Y  +       G  
Sbjct: 445 ---DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKS 501

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++    +   +P +  Y   + GL  E ++ EA ++   +V   F      +N L
Sbjct: 502 LEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 561

Query: 338 IGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           + S+   D R+  A  F    + KG    +   + +    C+ ++ D  + V   +   +
Sbjct: 562 LQSLCR-DGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 620

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y  +V  L   GR+ EA  ++++M  KG+DP    Y +++   C+   +    
Sbjct: 621 KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLV 680

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            + ++M +      +  YN +I K   +G++E A  L   +L      DA T  +L+EG 
Sbjct: 681 AILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGY 738

Query: 516 CQETNLQAAFEV----FNKSVNHDVMLARSI------------LSTFMISLCRRGHF 556
            ++    +A++V    FN+++  DV +   +                M+ L  RGH 
Sbjct: 739 LKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHI 795



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 176/434 (40%), Gaps = 31/434 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  L+     +     LK  +     +D   Y  I+ +L +     +A  + NE
Sbjct: 384 VTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINE 443

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +     D  P++      V      G +D A K+   M   G + +T+ +   +   C  
Sbjct: 444 M-----DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRT 498

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K  +   M++     E+     S+   +I+HG  +  ++ EA  V+ E+ ++   P  +
Sbjct: 499 GKSLEAREMMN--MSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPV 556

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV- 321
              ++ +     G   E    +++    G A    ++   I G       C+  EL    
Sbjct: 557 EINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGF------CQNDELDAAL 610

Query: 322 -IVSGKFTIDD--DV-----LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            ++   + I+   DV     L   +G    I    A      M+ KG  PT  T   +  
Sbjct: 611 SVLDDMYLINKHADVFTYTTLVDTLGKKGRI--AEATELMKKMLHKGIDPTPVTYRTVIH 668

Query: 374 NLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             C+  K D+LV +  K++S     T    YN ++  LC  G+L EA  ++ ++ R    
Sbjct: 669 RYCQMGKVDDLVAILEKMISRQKCRT---IYNQVIEKLCVLGKLEEADTLLGKVLRTASR 725

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            D     +LME   ++ +   A K+  +MF      ++K    L  +    G+++ A +L
Sbjct: 726 SDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKL 785

Query: 493 FHNMLEKG-VAPDA 505
              ++E+G ++P +
Sbjct: 786 MLRLVERGHISPQS 799



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 102/259 (39%), Gaps = 20/259 (7%)

Query: 324 SGKFTIDDDV--------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           +G+F +++D         +  LIG  SS +P+      N          L +L       
Sbjct: 129 AGRFDVEEDESRHPLVREVGRLIGLRSSWNPKHEGQMRNL---------LRSLKPSQVCA 179

Query: 376 CKRNKSDELVEV---YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             R++ DE V +   Y       Y  D   Y  M+  L  +   + +  V+  MKR+G+ 
Sbjct: 180 VLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIY 239

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
                ++ +M +  R   LR A K+   M  +G   NL   N  I  F     +E ALR 
Sbjct: 240 RTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRF 299

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   G+ P+  TY  ++ G C    ++ A E+     +   +  +    T M  LC+
Sbjct: 300 LERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCK 359

Query: 553 RGHFLVATKLLRGLSSDLG 571
               +    L++ ++ + G
Sbjct: 360 EKRIVEVRDLMKKMAKEHG 378


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 138/628 (21%), Positives = 246/628 (39%), Gaps = 104/628 (16%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           LSP L A  +   +  H      + FF W S++P + H+   + S+L  L   R     D
Sbjct: 69  LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPAD 128

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
            +  ++ + K   +    R +   L +       FS+++             CN+LL  L
Sbjct: 129 HI--RILMIKACRNEEEIRRVADFLNEISGMGFGFSLYS-------------CNTLLIQL 173

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK-------LGQVLS------- 210
           A    ++ A  ++ +M + G++ S + F   I    +  K       L Q+         
Sbjct: 174 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDV 233

Query: 211 ------MLDEVRKRENSMING-------------SVIAVLIIHGFCKGKRVEEAFKVLDE 251
                 +L   R R   +  G             SV    +I+G C   RV+EA  +L+E
Sbjct: 234 FTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----- 306
           +  +  +P    Y +       +    E   ++ + +K G  P    Y   I GL     
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 353

Query: 307 ---------------IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS--------- 342
                          +V   +     + E+ V G+F+    + + + G  S         
Sbjct: 354 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 413

Query: 343 -------SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                    D   A+V F  M++ G +PT+ T + L      +   +    +  ++  N 
Sbjct: 414 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 473

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +YN +VS     G+L  A    QEM   GL+P+   Y +L++   ++  +  A 
Sbjct: 474 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIAL 533

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L  +M   GC+ N+++YN +I+  S+      A ++   M+E+G+ P+  TYT+L++GL
Sbjct: 534 SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD- 569
           C+    Q AF++F+       +      S+ +  LC+ G    A  LL     +GL+ D 
Sbjct: 594 CRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDE 653

Query: 570 ------------LGHSDSHVILLKSLAD 585
                       LG  D   +LL+ + D
Sbjct: 654 VTFTSLIDGFVVLGRIDHAFLLLRRMVD 681



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 111/506 (21%), Positives = 207/506 (40%), Gaps = 71/506 (14%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S L++++++  LS   ++   + +L Q+    ++ D   Y  +I    + +N   AF VF
Sbjct: 197 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 256

Query: 143 NE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +  VK  C D      ++L+  L ++G +D AL M +EM  +G+E +   + + I   C 
Sbjct: 257 DRMVKEGC-DPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315

Query: 202 NAKLGQVLSMLDEVRKR---------------------------------ENSMINGSVI 228
                + + ++  ++KR                                 +  ++  +V 
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +I+  C G R   A K+   +       +   Y  + +   L G + +  V+ +K  
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-R 347
           K+G  P    Y   I G + +  +  A  L +++       D+   N L+   S      
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD----------EL-----VEVYKV-- 390
           SA  +F  M+E G  P   + + L     K  K D          E+     VE Y    
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 391 --LSANDYFTDME----------------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LS  + F++ E                +Y  ++  LC +GR + A+ +  +M+++   
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P++  Y+SL+   C+E     A+ L  +M   G + +  T+  LI  F  +G I+ A  L
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 675

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQE 518
              M++ G  P+  TY+ LL+GL +E
Sbjct: 676 LRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 41/252 (16%)

Query: 383 ELVE----VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           E+VE    +YK +  +     + ++N +++ L   G++REA  ++ ++ +  L PDV  Y
Sbjct: 177 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
            SL+   CR   L  A  ++D+M   GC  N  TY+ LI+     G ++ AL +   M+E
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 499 KGVAP-----------------------------------DATTYTSLLEGLCQETNLQA 523
           KG+ P                                   +  TYT+L+ GL +   L+ 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS--SDLGHSDSHVILLK 581
           A  +++K +   ++      +  +  LC  G F  A K+   +     L ++ ++  ++K
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIK 416

Query: 582 SLADAREVEMAI 593
            L    ++E A+
Sbjct: 417 GLCLGGDIEKAM 428



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 161/386 (41%), Gaps = 8/386 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  LS   ++     +  ++    +  ++  Y  +I  L  G     A  +F+ +
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + +      +  N ++  L   G I+ A+ +F++M   G   + + +   I  +     +
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +LD ++  EN           ++ GF K  ++E A     E+      P+ ++Y 
Sbjct: 460 NNAARLLDLMK--ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +     G V     +LK+  ++G  P    Y   I GL  E R  EA+++ + +V  
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ 577

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               +      LI  +   + R+   F  F+ M ++  +P L T S+L   LC+  K+DE
Sbjct: 578 GLLPNVITYTTLIDGLCR-NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE 636

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              + K +       D  ++  ++      GR+  A+ +++ M   G  P+   Y+ L++
Sbjct: 637 AEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLK 696

Query: 444 ACCREDLLRPAK--KLWDQMFASGCS 467
              +E LL   K   L D  F  GC+
Sbjct: 697 GLQKECLLLEEKIFPLVDNYFL-GCN 721


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 203/475 (42%), Gaps = 52/475 (10%)

Query: 60  LLTHH---SLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK- 114
           ++TH     LA   F++A +  P F+H+  +YHSI+  LS +R  + ++S+L Q+  N  
Sbjct: 21  MITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQLSRNSS 80

Query: 115 -ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEICNSLLAVLASDG--- 168
            I     V+  +I +       + A   F  +K  F+ +    ++ N+LL V   +    
Sbjct: 81  HIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQP-SVKLLNTLLNVFVQNKRYH 139

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            + + LK   +    GV  +   F + I   C+   +   L + DE+      MI   V 
Sbjct: 140 LVGSTLKNCKD--KYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTM--GMIPNLVT 195

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              I+ GF     +  A KV  E+  +   PD   Y ++   +   G + +   V+    
Sbjct: 196 YTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNME 255

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
             GV P    Y   I     E++  EA+ L          IDD                 
Sbjct: 256 YNGVEPNEVTYGVMIDAYCKEKKSGEARNL----------IDD----------------- 288

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
                  M++K  +P+ +    +   LC+  K +    ++K +   +   D    + ++ 
Sbjct: 289 -------MLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIH 341

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           +LC  G++ EA  +  E + +G  P +  YN+L+   C    L  A +LWD M    C  
Sbjct: 342 WLCKEGKVWEARKLFDEFE-QGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRP 400

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           N  TYN+LI  F + G ++  +R+   ML+ G  P+ +TYT L+EGL QE+ ++ 
Sbjct: 401 NAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGL-QESGMEG 454



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P + + + L K LCK+N  +  ++V+  +       ++ +Y  ++    + G L  A
Sbjct: 153 GVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNA 212

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V  E+  KG  PD + Y  LM   C++  L  A K+ D M  +G   N  TY ++I  
Sbjct: 213 EKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDA 272

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           + +  +   A  L  +ML+K   P +T    +++ LC++  ++ A  ++ + +  + +  
Sbjct: 273 YCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPD 332

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
            +I+ST +  LC+ G    A KL 
Sbjct: 333 NAIMSTLIHWLCKEGKVWEARKLF 356



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 413 SGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACC---REDLLRPAKKLWDQMFASGCSG 468
           +GR R A      +K +  + P V   N+L+       R  L+    K     +  G   
Sbjct: 99  AGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKY--GVLP 156

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ ++NILI    +  ++E AL++F  M   G+ P+  TYT++L G     +L  A +VF
Sbjct: 157 NVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVF 216

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           ++  +   +   +  +  M+  C++G    A K++  +
Sbjct: 217 SEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNM 254


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/446 (21%), Positives = 202/446 (45%), Gaps = 38/446 (8%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLI-----------QGKNTQKAFSVFNEVKFNCEDIG 153
           + + QV VNK+  D+  +  +I               + + ++ A  +  +  +NC    
Sbjct: 80  NTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCP--- 136

Query: 154 PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P +   N ++  L  +G +D A  +F EM  +G   + + +   I   C+   + +  ++
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           L ++                    F KG+ +EEA ++L ++     +PD + Y ++ + +
Sbjct: 197 LQQM--------------------FDKGQ-LEEAVRLLKKMSGGGLQPDVVTYSLLIDYY 235

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             +G   E   +     + G  P    YR  + G   +  + +  +L  +++     ++D
Sbjct: 236 CKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLED 295

Query: 332 DVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
            V N LI + +  +    A+  F  M +KG  P + T + +   LCK  + ++ V  +  
Sbjct: 296 HVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQ 355

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +     D+ ++  ++  LCT G  ++   +  EM  +G+ P+  F N++M++ C+E  
Sbjct: 356 MVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGR 415

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A   +DQ+   G   ++ +Y ILI  +   G+++ +++L   M+  G+ PD  TY++
Sbjct: 416 VLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSA 475

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDV 536
           LL G C+   +  A  ++ +  + DV
Sbjct: 476 LLNGYCKNGRVDDALALYREMFSKDV 501



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/499 (20%), Positives = 208/499 (41%), Gaps = 41/499 (8%)

Query: 53  ARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112
             V   Y L H  L  GF       PN     ++Y+S++  L  ++ ++  ++VL+Q+  
Sbjct: 153 GEVDKAYTLFHEMLGQGF------PPNI----VTYNSVIDGLCKAQAMDKAEAVLQQM-F 201

Query: 113 NKITLDSSV-----------------YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +K  L+ +V                 Y  +I    +     +A ++F+ +    ++    
Sbjct: 202 DKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAY 261

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
              +LL   A+ G + +   +   M   G+      F + I  + +N  L + ++   E+
Sbjct: 262 TYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEM 321

Query: 216 RKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           R++    N +   +VI +L     CK  RVE+A     ++      PD I +  +     
Sbjct: 322 RQKGFSPNVVTYTTVIDIL-----CKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLC 376

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            +G   + E +  +    G+ P        +  L  E R+ EA +  + I+     +  D
Sbjct: 377 TIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQII--HVGVKPD 434

Query: 333 VLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
           V++  I   G         +I     M+  G  P   T S L    CK  + D+ + +Y+
Sbjct: 435 VVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYR 494

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            + + D   +  +YN+++  L  +GR+  A     ++   G+   ++ YN ++   C   
Sbjct: 495 EMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENS 554

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +++  + +      ++T+NI+I    +VG I  A  LF  +L  G+ PDA  Y 
Sbjct: 555 FVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYG 614

Query: 510 SLLEGLCQETNLQAAFEVF 528
            +++   +E  L+ + E+F
Sbjct: 615 LMIQSHIEEGLLEESDELF 633



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 59/266 (22%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD----------------ELVEVYKVLS 392
           A   F+ M+ +G  P + T +++   LCK    D                E V + K +S
Sbjct: 158 AYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMS 217

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY-------------- 438
                 D+ +Y++++ + C  GR  EA  +   M R+G +PD   Y              
Sbjct: 218 GGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALV 277

Query: 439 ---------------------NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
                                N L+ A  + + L  A   + +M   G S N+ TY  +I
Sbjct: 278 DMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVI 337

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA----AFEVFNKSVN 533
               + G +E A+  F  M+ +G++PD  T+TSL+ GLC     +     +FE+ N+ ++
Sbjct: 338 DILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIH 397

Query: 534 HDVMLARSILSTFMISLCRRGHFLVA 559
            + +     L+T M SLC+ G  L A
Sbjct: 398 PNAIF----LNTIMDSLCKEGRVLEA 419


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 202/481 (41%), Gaps = 21/481 (4%)

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKS--LSLSRQINAIDSVLKQVKVNKITLDS- 119
           H  LAL F  W  +QP      L++   L +  L  +R  ++  S+L+ +    I   S 
Sbjct: 89  HGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSI 148

Query: 120 ---------------SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
                          SV+  +I   ++      A   F  V           CN +LA +
Sbjct: 149 FGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASM 208

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             D   +    +F EMS +G+  +   F + I   C    L +  ++L ++   EN  + 
Sbjct: 209 VKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQME--ENGFVP 266

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    +++ +CK  R + A +++D +  +  + D   Y +  +         +  ++L
Sbjct: 267 TIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLL 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           KK RK  ++P    Y   I G + E +I  A ++   +     + +    NALIG    +
Sbjct: 327 KKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHV 386

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D   A+   + M   G      T   L   LCK  K +    + + +  ND      +Y
Sbjct: 387 GDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAY 446

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            V++  LC +G L EA  ++  M + G++PDV  Y+SL+   CR   ++ AK++  +M+ 
Sbjct: 447 TVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYR 506

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG   N   Y+ LI  F + G +  A++++  M   G   D  T   L+  LC++  L  
Sbjct: 507 SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGE 566

Query: 524 A 524
           A
Sbjct: 567 A 567



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 209/494 (42%), Gaps = 32/494 (6%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++        I +   ++ ++  + + L+  +Y  +I +  Q  N  +A  V+  
Sbjct: 479 ITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY-- 536

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
              NC   G +   CN L++ L  DG +  A K    MS  G+  ++I +   I  +   
Sbjct: 537 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 596

Query: 203 AKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                  S  D++ K     +    GS     ++ G CKG  + EA K L+ L       
Sbjct: 597 GDPLNAFSFFDDMIKCGQHPSFFTYGS-----LLKGLCKGGNLVEAKKFLNRLHYIPGAV 651

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL- 318
           D + Y  +  E    G++ E   +  K  +  V P +  Y   + GL  + +   A  L 
Sbjct: 652 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 711

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           G  +  G    +  +   L+  +S    P++A  FF  M++KG  P     + +  +  +
Sbjct: 712 GTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSR 771

Query: 378 RNKSDELVEVYKVLSANDYFTDME---------SYNVMVSFLCTSGRLREAYGVIQEMKR 428
           R +         ++ AND+F+ M          +YN+++        L     +   M R
Sbjct: 772 RGQ---------MMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMR 822

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G+ PD   ++SL+    +  +     KL  +M   G   +  T+NILI+K+SE G++  
Sbjct: 823 EGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRK 882

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  L + M   GV PD  TY  +  GL +++  + +  V ++ + + V+   +   T + 
Sbjct: 883 AFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLIN 942

Query: 549 SLCRRGHFLVATKL 562
            +CR G    A KL
Sbjct: 943 GMCRVGDIQGAFKL 956



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/631 (20%), Positives = 242/631 (38%), Gaps = 88/631 (13%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+  + +L  + +      +LK+++   I+ +   Y  +I   ++      A  VFNE+
Sbjct: 305 TYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEM 364

Query: 146 -KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            KF   D+ P     N+L+      G  + AL++ D M   G+  + + +G  +   C++
Sbjct: 365 SKF---DLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKH 421

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K      +L+  R R N M+ G +   ++I G CK   ++EA +++  +      PD I
Sbjct: 422 EKFELAKRLLE--RMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 479

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   F  +G++   + ++ +  + G+      Y   I        + EA ++  V+
Sbjct: 480 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 539

Query: 323 VSGKFTIDDDVLNALIGSV------------------------------------SSIDP 346
                  D    N L+ S+                                    S  DP
Sbjct: 540 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDP 599

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF---TDMESY 403
            +A  FF+ MI+ G+ P+  T  +L K LCK      LVE  K L+   Y     D   Y
Sbjct: 600 LNAFSFFDDMIKCGQHPSFFTYGSLLKGLCK---GGNLVEAKKFLNRLHYIPGAVDSVMY 656

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++  C SG L EA  +  +M +  + PD   Y+SL+   CR+     A  L+     
Sbjct: 657 NTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 716

Query: 464 SGC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA----------------- 505
            G    N   Y  L+   S+ G  + A   F  M++KG  PD                  
Sbjct: 717 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 776

Query: 506 ------------------TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
                              TY  LL G  ++  L     +++  +   +   +    + +
Sbjct: 777 KANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLI 836

Query: 548 ISLCRRGHFLVATKLLRG--LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
           + L + G   +  KLL    +   L    +  IL+   +++ ++  A + + ++      
Sbjct: 837 LGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVF 896

Query: 606 MLQEISAELFASLSSSSYPEPILLLLHALQE 636
             ++    +F  L+  S      ++LH + E
Sbjct: 897 PDRDTYNHIFNGLNKKSAFRESTVVLHEMLE 927



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 2/231 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E G VPT+ T + L    CK+ +    +E+   +       D+ +YNV +  LCT+ R
Sbjct: 259 MEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHR 318

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +AY ++++M+++ + P+   YN+L+    +E  +  A +++++M     S N  TYN 
Sbjct: 319 SAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNA 378

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI     VG+ E ALRL  +M   G+  +  TY +LL GLC+    + A  +  +   +D
Sbjct: 379 LIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVND 438

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           +++     +  +  LC+ G    A +L+  +  D  + D  VI   SL + 
Sbjct: 439 MVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPD--VITYSSLING 487



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/524 (19%), Positives = 199/524 (37%), Gaps = 51/524 (9%)

Query: 122  YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
            Y  ++  L +G N  +A    N + +    +   + N+LLA     G +  A+ +FD+M 
Sbjct: 621  YGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMV 680

Query: 182  HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
               V   +  +   +   C   K    + +      R  ++    V+   ++ G  K   
Sbjct: 681  QNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR-GTLFPNHVMYTCLVDGLSKAGH 739

Query: 242  VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
             + AF   +E+  +   PD +A+  + +     G + +        R  GV P    Y  
Sbjct: 740  PKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNI 799

Query: 302  FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
             + G   ++ +     L   ++      D    ++LI G   S  P   +     MI +G
Sbjct: 800  LLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEG 859

Query: 361  RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             +    T + L     +  K  +  ++   ++    F D ++YN + + L      RE+ 
Sbjct: 860  TLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFREST 919

Query: 421  GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----------- 469
             V+ EM   G+ P  + Y +L+   CR   ++ A KL D+M A G   +           
Sbjct: 920  VVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGL 979

Query: 470  ------------------------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
                                    + T+  L+ +F    +I  AL+L   M   G+  D 
Sbjct: 980  LHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDV 1039

Query: 506  TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-- 563
              Y  L+ G+C   +  AAFE++ +  + D+    +  +  + ++    + +   KLL  
Sbjct: 1040 VAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTD 1099

Query: 564  ---RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604
               RGL S  G S  H+         +E+ +A+  + +I+   P
Sbjct: 1100 LQERGLIS-WGGSTQHL--------DKELTVAMGKLNYIRCFYP 1134



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 101/204 (49%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P++ T + +  ++ K  +++ +  +++ +S      ++ ++N++++ LC  G L++A
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++++M+  G  P +  YN+L+   C++   + A +L D M   G   ++ TYN+ I  
Sbjct: 253 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 312

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                    A  L   M ++ ++P+  TY +L+ G  +E  +  A +VFN+    D+   
Sbjct: 313 LCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPN 372

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +  +   C  G F  A +LL
Sbjct: 373 CVTYNALIGGHCHVGDFEEALRLL 396



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 85/191 (44%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K    D  VE ++++    +   + + N++++ +    R    + + +EM  KG+ P+V 
Sbjct: 175 KEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVG 234

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +N L+   C E  L+ A  L  QM  +G    + TYN L++ + + G  + A+ L   M
Sbjct: 235 TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM 294

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           + KG+  D  TY   ++ LC       A+ +  K     +       +T +    + G  
Sbjct: 295 ICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 354

Query: 557 LVATKLLRGLS 567
            VA ++   +S
Sbjct: 355 GVAAQVFNEMS 365



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 71/168 (42%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +++++      G +  A    + +   G  P V   N ++ +  ++        L+ +M 
Sbjct: 166 FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMS 225

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N+ T+NILI+     G ++ A  L   M E G  P   TY +LL   C++   +
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 285

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
           AA E+ +  +   +       + F+ +LC       A  LL+ +  ++
Sbjct: 286 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM 333



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           S ++ L+    +E ++  A + ++ +   G   ++ T N++++   +    E    LF  
Sbjct: 164 SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 223

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M +KG+ P+  T+  L+ GLC E NL+ A  +  +   +  +      +T +   C++G 
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 556 FLVATKLL-----RGLSSDL 570
           +  A +L+     +G+ +D+
Sbjct: 284 YKAAIELIDYMICKGIEADV 303


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 35/466 (7%)

Query: 54  RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           R INP ++T+ +L  GFF +  Q          YH               D + + VKVN
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALE----VYH---------------DMLCEGVKVN 483

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           K  +DS     ++  L Q    ++A ++F +   +   +      +L+  L   G +  A
Sbjct: 484 KFIVDS-----LVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTA 538

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR----KRENSMINGSVIA 229
            K   E+  R +    + + VFI   C   K  +  S L E+R    K + S  N  +++
Sbjct: 539 FKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVS 598

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                  C+     +A K+L E+++   KP+ I Y  +       G+V + + +L +   
Sbjct: 599 ------HCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRS 348
            G +P +  +R  +      RR+    ++ E +++     D  V N L+  +      R 
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V    M+  G  P   T + L    CK +  D     Y  +   +   ++ ++N ++ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L + GR+ EA  V+ EM++ GL+P+   Y+ L     ++     A +L+ +M   G   
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            + TYN LIS F++ G +  A  LF +M ++GV P + TY  L+ G
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/558 (22%), Positives = 216/558 (38%), Gaps = 87/558 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + Y++++     + Q++A   VL  +K   +  + + Y   I    + K  ++AF ++  
Sbjct: 205 VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEG 264

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  N   +     ++L+A L  DG    A  +F EM   G   + + +   I    +  +
Sbjct: 265 MVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 205 LGQVLSMLDEVRKR----------------------------------ENSMINGSVIAV 230
             ++LS+L E+  R                                  +N   NG    V
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI    CK   V+EA +VL E+  +   P+ + +  V   F   G + +     +  ++ 
Sbjct: 385 LI-DALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER 443

Query: 291 GVAPRTNDYREFILGL-----------IVERRICEAKELGEVIV---------SGKFTID 330
           G+ P    Y   I G            +    +CE  ++ + IV         +GK    
Sbjct: 444 GINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEA 503

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             +     GS  S+D  +     + + + G +PT        + L  RN           
Sbjct: 504 MALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAF---KFGQELMDRN----------- 549

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D   YNV ++ LC  G+ +EA   + EM+  GL PD S YN+++ + CR+  
Sbjct: 550 -----MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGE 604

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
              A KL  +M  S    NL TYN L++     G +E A  L + M+  G +P + T+  
Sbjct: 605 TAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRR 664

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----G 565
           +L+   Q   L    ++    +N  +    ++ +T +  LC  G    AT +L      G
Sbjct: 665 VLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSG 724

Query: 566 LSSD--------LGHSDS 575
           ++ D        LGH  S
Sbjct: 725 IAPDTITFNALILGHCKS 742



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LLA L+   +   A  +  EM  RGV F  +     +   C N ++    ++ D    
Sbjct: 107 NILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD---- 159

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R   +    VI    +I G+C+      A  V D +  +    D + Y  +   F   G 
Sbjct: 160 RGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ 219

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V     VL   ++ GV P    Y  FI+     + + EA +L E +V     +D   L+A
Sbjct: 220 VDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSA 279

Query: 337 LIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           L+  +   D R   A   F  M + G  P   T   L  +L K  +  EL+ +   + + 
Sbjct: 280 LVAGLCR-DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSR 338

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y  ++ +L   G+  E    ++      L P+   Y  L++A C+   +  A
Sbjct: 339 GVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEA 398

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +++  +M     S N+ T++ +I+ F + G ++ A      M E+G+ P+  TY +L++G
Sbjct: 399 EQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDG 458

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
             +     AA EV++  +   V + + I+ + +  L + G    A  L +  S   G S 
Sbjct: 459 FFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS-GLSL 517

Query: 575 SHV 577
            HV
Sbjct: 518 DHV 520



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/527 (21%), Positives = 218/527 (41%), Gaps = 38/527 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L    + + +   L+    + ++ +   Y  +I +L +  N  +A  V  E
Sbjct: 345 VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLE 404

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKF 199
           ++   + I P +   +S++      G +D A +    M  RG+  + + +G  I   +KF
Sbjct: 405 MEE--KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKF 462

Query: 200 --------------CENAKLGQVL--SMLDEVR---KRENSMI-----NGSVIAV----- 230
                         CE  K+ + +  S+++ +R   K E +M      +GS +++     
Sbjct: 463 QGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNY 522

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K   +  AFK   EL  R   PD + Y +      ++G   E +  L + R 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRN 582

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
           +G+ P  + Y   I+    +    +A +L   +       +    N L+ G   +     
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    N M+  G  P+  T   + +   +  + D ++++++ +       D+  YN ++ 
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G  R+A  V++EM   G+ PD   +N+L+   C+   L  A   + QM     S 
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+N L+     VG I  A  +   M + G+ P+  TY  L  G  +++N   A  ++
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            + V    +   S  +  +    + G    A +L + +     H  S
Sbjct: 823 CEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTS 869



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D +  N+L+ + CR  LLRPA  L      +  +     YNIL++  S+       L   
Sbjct: 72  DPASLNALLYSHCRLRLLRPAIALLRSSRPTTVA-----YNILLAALSDHAHAPAVLA-- 124

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
             M ++GV  D  T  +LL GLC+   + AA  + ++ 
Sbjct: 125 -EMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRG 161


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/531 (21%), Positives = 230/531 (43%), Gaps = 35/531 (6%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF   +    F H+PL++  +++ L++  Q++++  +L+Q+K+        ++  +
Sbjct: 57  LALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISV 116

Query: 126 IPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           I    Q    ++A  +F  +K F C D   +I N +L  L  +  I     ++ +M   G
Sbjct: 117 ISVYRQVGLAERAVEMFYRIKEFGC-DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 175

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVL---------- 231
            E +   + V +   C+N K+     +L E+  +    N++   +VI+ +          
Sbjct: 176 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGR 235

Query: 232 ---------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                          +I+G CK +  +   +++ E+  +   P+ I+Y  +  E    G 
Sbjct: 236 QLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQ 295

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-- 334
           +     +L +  K G  P  +     + G  V     +A ++   ++ G F +  +V+  
Sbjct: 296 IELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRG-FGLQPNVVAY 354

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N L+ G  S  +   A+  F  M E G  P + T  +L     KR   +  V ++  +  
Sbjct: 355 NTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLT 414

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    ++  Y  MV  LC   + +EA  +I+ M ++   P V  +N+ ++  C    L  
Sbjct: 415 SGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 474

Query: 454 AKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           A+K++ QM     C  N+ TYN L+   ++   IE A  L   +  +GV    +TY +LL
Sbjct: 475 AEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLL 534

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            G C       A ++  K + +        ++  +++ C++G    A ++L
Sbjct: 535 HGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQML 585



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G    A  +   +K  G DP V  YN +++    E+ ++    ++  M   G   N+ TY
Sbjct: 124 GLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTY 183

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA---FEVFNK 530
           N+L+    +  +++GA +L   M  KG  P+A +YT+++  +C+   ++      E F  
Sbjct: 184 NVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEP 243

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
            V        S+ +  +  LC+   +    +L+     +G+S ++    S+  L+  L++
Sbjct: 244 VV--------SVYNALINGLCKERDYKGGVELMSEMVEKGISPNV---ISYSTLINELSN 292

Query: 586 AREVEMA 592
           + ++E+A
Sbjct: 293 SGQIELA 299


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 138/559 (24%), Positives = 241/559 (43%), Gaps = 79/559 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S++  L ++ +++    VL+++  N    +   Y  ++    + +   +A  +  E
Sbjct: 81  VTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIRE 140

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDN-------ALKMFDEMSHRGVEFSTIGFGVFIW 197
           +          +CN ++ +    G+ +          +  DEM   G     + +  FI 
Sbjct: 141 MILR-----GSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFIS 195

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             C+  KL + L ML+E+ +    +    V    II G CK  R+++AF+V   +  R C
Sbjct: 196 GLCKAGKLDKGLEMLEEMDR--GGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC 253

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLK--KKRKLGVAPRTNDYREFILGLIVERRICEA 315
            PD + Y I+ +       +   + VL+  +  K G       +  FI            
Sbjct: 254 VPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFI------------ 301

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              G +  SGKF +     N L+G                MIE G +P L + + +   L
Sbjct: 302 ---GALCRSGKFPL---AKNILLG----------------MIESGSLPNLLSYNFVIDGL 339

Query: 376 CKRNKSDELVEV-YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-P 433
           CK    D+  ++  K+L +     D+  +N ++S  C +GRL +A+ ++ EMK K +  P
Sbjct: 340 CKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVP 399

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  YN+L++   +   L+ AK L  +M A GC  N+ TY  LI+ +++ G  E A  LF
Sbjct: 400 DVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLF 459

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH------DVMLARSILSTFM 547
             M  KG  PD  TY ++L    +   +  A  V+ +  N       D +  R ++  + 
Sbjct: 460 DEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGY- 518

Query: 548 ISLCR-----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREV---EMAIEHIKWI 599
              CR     +G  L+     RG S D   S ++ +L+  LA+  EV    +A+      
Sbjct: 519 ---CRAEDTEQGLTLLQEMTARGWSCD---SYTYNVLIAKLAETEEVPSKALAVYQQMLD 572

Query: 600 QESSPTMLQEISAELFASL 618
           Q+  P      SA +F SL
Sbjct: 573 QDCVP------SASIFNSL 585



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 16/394 (4%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M+  G + S + +   I   C++  L    ++L ++   +       V    +I G CK 
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA--DAGCAPNVVTYTALIDGLCKA 58

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           +R  +A + +  +    C+PD + Y  +     +   + +  +VL++  + G AP    Y
Sbjct: 59  RRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITY 118

Query: 300 REFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIG--SVSSIDPRSAIVFFNFM 356
              ++     RR+ +A+ L  E+I+ G        ++ + G         R      + M
Sbjct: 119 STLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEM 178

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           IE GR+P + T +     LCK  K D+ +E+ + +       D+ ++  ++S LC + R+
Sbjct: 179 IESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRI 238

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA--SGCSGNLKTYN 474
            +A+ V + M  +G  PD   Y+ +++   R + L    ++ + M A  +GC   + T+N
Sbjct: 239 DDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHN 298

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
             I      G+   A  +   M+E G  P+  +Y  +++GLC+  N+  A+++  K ++ 
Sbjct: 299 AFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDS 358

Query: 535 -----DVMLARSILSTFMISLCRRGHFLVATKLL 563
                DV+   +++S F    C+ G    A +LL
Sbjct: 359 GCCKPDVIFFNTLISGF----CKAGRLSQAHQLL 388



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 74/302 (24%)

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   S D  +A      M + G  P + T + L   LCK  +  + ++  K +  +    
Sbjct: 19  GLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEP 78

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL- 457
           D+ +YN ++  LC + R+ +A  V+QE+ R G  P+   Y++L+   CR   L  A+ L 
Sbjct: 79  DLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLI 138

Query: 458 ------------------------------------WDQMFASGCSGNLKTYNILISKFS 481
                                                D+M  SG   ++ TYN  IS   
Sbjct: 139 REMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLC 198

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN---------KSV 532
           + G+++  L +   M   G+ PD  T+ S++ GLC+   +  AF+VF           S+
Sbjct: 199 KAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSL 258

Query: 533 NHDVML-----------------------ARSIL-----STFMISLCRRGHFLVATKLLR 564
            + +ML                       A  ++     + F+ +LCR G F +A  +L 
Sbjct: 259 TYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILL 318

Query: 565 GL 566
           G+
Sbjct: 319 GM 320



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 174/450 (38%), Gaps = 57/450 (12%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALK 175
           D   Y   I  L +     K   +  E+      I P++    S+++ L     ID+A +
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRG--GIPPDVVTFCSIISGLCKANRIDDAFQ 243

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +F  M  RG    ++ + + +    +N      L  +DEV +   +M  G V+ V   + 
Sbjct: 244 VFKGMLERGCVPDSLTYSIML----DNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNA 299

Query: 236 F----CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           F    C+  +   A  +L  +      P+ ++Y  V +     G+V +   + +K    G
Sbjct: 300 FIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSG 359

Query: 292 VA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV-LNALIGSVSSIDP-RS 348
              P    +   I G     R+ +A +L   + +    + D V  N LI   S     + 
Sbjct: 360 CCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQ 419

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A +    M   G  P + T + L     K    +E   ++  +SA   F D+ +YN ++S
Sbjct: 420 AKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLS 479

Query: 409 FLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
               +G + +A GV Q++K K     PD   Y  L++  CR +       L  +M A G 
Sbjct: 480 AFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGW 539

Query: 467 SGNLKTYNILISKFSEV------------------------------------GEIEGAL 490
           S +  TYN+LI+K +E                                     G++  A 
Sbjct: 540 SCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSAR 599

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            +   M EKG   DA+     LE L +E+N
Sbjct: 600 SMVQEMNEKGHLVDASN----LEALNKESN 625



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G D  V  Y +L++  C+   L  A+ L  +M  +GC+ N+ TY  LI    +   
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
              A++    ML  G  PD  TY SL+ GLC    +  A  V  + V +         ST
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 546 FMISLCRRGHFLVATKLLR 564
            +I  CRR     A  L+R
Sbjct: 121 LVIWNCRRRRLDQARGLIR 139



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 132/326 (40%), Gaps = 50/326 (15%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M   G   ++ T + L   LCK    D    + + ++      ++ +Y  ++  LC + R
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +A   ++ M R G +PD+  YNSL+   C  + +  A  +  ++  +G + N  TY+ 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 476 LI---SKFSEVGEIEGALR-----------------LF-----------------HNMLE 498
           L+    +   + +  G +R                 +F                   M+E
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRG 554
            G  PD  TY + + GLC+   L    E+  +     +  DV+   SI+S     LC+  
Sbjct: 181 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIIS----GLCKAN 236

Query: 555 HFLVATKLLRGLSSDLGHSDS--HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI-- 610
               A ++ +G+       DS  + I+L +L+ A  ++   E ++ +Q      + E+  
Sbjct: 237 RIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYT 296

Query: 611 -SAELFASLSSSSYPEPILLLLHALQ 635
            +A + A   S  +P    +LL  ++
Sbjct: 297 HNAFIGALCRSGKFPLAKNILLGMIE 322


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 202/436 (46%), Gaps = 11/436 (2%)

Query: 158  NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            N+L+  L        A+ + D M  +G +   + +GV +   C+        ++L+++  
Sbjct: 804  NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME- 862

Query: 218  RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             +  +  G +I   II G CK K +++A  +  E+  +  +P+ + Y  +       G  
Sbjct: 863  -QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 921

Query: 278  FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
             +   +L    +  + P    +   I   + E ++ EA++L + +V  K +ID  ++  +
Sbjct: 922  SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV--KRSIDPSIVTYS 979

Query: 336  ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +LI      D    A   F FM+ K   P + T + L K  CK  + +E +EV++ +S  
Sbjct: 980  SLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 1039

Query: 395  DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +  +YN+++  L  +G    A  + +EM   G+ P++  YN+L++  C+   L  A
Sbjct: 1040 GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 1099

Query: 455  KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
              +++ +  S     + TYNI+I    + G++E    LF N+  KGV PD   Y +++ G
Sbjct: 1100 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG 1159

Query: 515  LCQETNLQAAFEVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
             C++ + + A  +F K +  D  L  S   +T + +  R G    + +L++ + S     
Sbjct: 1160 FCRKGSKEEADALF-KEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAG 1218

Query: 574  DSHVILLKS--LADAR 587
            D+  I L +  L D R
Sbjct: 1219 DASTIGLVTNMLHDGR 1234



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 198/451 (43%), Gaps = 10/451 (2%)

Query: 77   QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
            QPN     +++++++  L L  + +   +++ ++       D   Y  ++  L +  +T 
Sbjct: 797  QPN----TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852

Query: 137  KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             AF++ N+++    + G  I N+++  L    ++D+AL +F EM  +G+  + + +   I
Sbjct: 853  LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 197  WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
               C   +      +L ++ +R+   IN  V     +I  F K  ++ EA K+ DE+  R
Sbjct: 913  SCLCNYGRWSDASRLLSDMIERK---INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 969

Query: 256  ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
               P  + Y  +   F +   + E + + +        P    Y   I G    +R+ E 
Sbjct: 970  SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 1029

Query: 316  KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             E+   +       +    N LI G   + D   A   F  M+  G  P + T + L   
Sbjct: 1030 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 1089

Query: 375  LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            LCK  K ++ + V++ L  +     + +YN+M+  +C +G++ + + +   +  KG+ PD
Sbjct: 1090 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 1149

Query: 435  VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            V  YN+++   CR+     A  L+ +M   G   N   YN LI      G+ E +  L  
Sbjct: 1150 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 1209

Query: 495  NMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             M   G A DA+T   L+  +  +  L  +F
Sbjct: 1210 EMRSCGFAGDAST-IGLVTNMLHDGRLDKSF 1239



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 196/484 (40%), Gaps = 52/484 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +      D  + +  +M   G+      F + I  FC   ++   LS+L ++ K
Sbjct: 192 NRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLK 251

Query: 218 ---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                + +  GS     +++GFC+  RV +A  ++D++     KPD +AY  + +     
Sbjct: 252 LGYEPDRVTIGS-----LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT 306

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             V +     K+  + G+ P    Y   + GL    R  +A  L                
Sbjct: 307 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL---------------- 350

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
                              + MI+K   P + T S L     K  K  E  E+++ +   
Sbjct: 351 ------------------LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 392

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y+ +++ LC   R+ EA  +   M  KG   DV  YN+L+   C+   +   
Sbjct: 393 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 452

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            KL+ +M   G   N  TYN LI  F + G+++ A   F  M   G++PD  TY  LL G
Sbjct: 453 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 512

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSD 569
           LC    L+ A  +F      ++ L     +T +  +C+ G    A  L     L+GL  D
Sbjct: 513 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 572

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKW--IQESSPTMLQ---EISAELFASLSSSSYP 624
           +    + +  L +     EVE     +K   + ++  T+      +SAEL   + S  Y 
Sbjct: 573 IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYA 632

Query: 625 EPIL 628
             +L
Sbjct: 633 PSLL 636



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 209/454 (46%), Gaps = 46/454 (10%)

Query: 160  LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
            LL+ +A     D  + + ++M + G+  +   + + I  FC  ++L   L++L ++ K  
Sbjct: 701  LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 760

Query: 218  RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             E +++  S +    ++G+C  KR+ EA  ++D++ +   +P+ + +  +     L    
Sbjct: 761  YEPNIVTLSSL----LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKA 816

Query: 278  FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
             E   ++ +    G  P    Y   + GL      C+               D D+   L
Sbjct: 817  SEAMALIDRMVAKGCQPDLVTYGVVVNGL------CKRG-------------DTDLAFNL 857

Query: 338  IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            +  +        ++ +N +I+                LCK    D+ + ++K +      
Sbjct: 858  LNKMEQGKLEPGVLIYNTIID---------------GLCKYKHMDDALNLFKEMETKGIR 902

Query: 398  TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
             ++ +Y+ ++S LC  GR  +A  ++ +M  + ++PDV  +++L++A  +E  L  A+KL
Sbjct: 903  PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 962

Query: 458  WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            +D+M       ++ TY+ LI+ F     ++ A ++F  M+ K   PD  TY +L++G C+
Sbjct: 963  YDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 1022

Query: 518  ETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSD-- 574
               ++   EVF + ++   ++  ++    +I  L + G   +A ++ + + SD    +  
Sbjct: 1023 YKRVEEGMEVF-REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 1081

Query: 575  SHVILLKSLADAREVEMAIEHIKWIQESS--PTM 606
            ++  LL  L    ++E A+   +++Q S   PT+
Sbjct: 1082 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 1115



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 179/446 (40%), Gaps = 54/446 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L L  +I+  + +   +       D   Y  +I    + K  +    +F E
Sbjct: 399 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE 458

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            N+L+      G +D A + F +M   G+      + + +   C+N +
Sbjct: 459 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 518

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L + L + ++++KRE  +    V    +I G CK  +VEEA+ +   L ++  KPD + Y
Sbjct: 519 LEKALVIFEDMQKREMDL--DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 576

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +       G + E E +  K ++ G+    ND              C   + G++ +S
Sbjct: 577 TTMMSGLCTKGLLHEVEALYTKMKQEGLMK--ND--------------CTLSD-GDITLS 619

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
            +                             M+  G  P+L  L ++   +CK+  S  L
Sbjct: 620 AEL-------------------------IKKMLSCGYAPSL--LKDIKSGVCKKALS--L 650

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +  +   ++ DY   + S N +        +L +A  +  EM +    P +  ++ L+ A
Sbjct: 651 LRAFSGKTSYDYREKL-SRNGLSEL-----KLDDAVALFGEMVKSRPFPSIIEFSKLLSA 704

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             + +       L +QM   G   N  TY+ILI+ F    ++  AL +   M++ G  P+
Sbjct: 705 IAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPN 764

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNK 530
             T +SLL G C    +  A  + ++
Sbjct: 765 IVTLSSLLNGYCHSKRISEAVALVDQ 790


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 35/466 (7%)

Query: 54  RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           R INP ++T+ +L  GFF +  Q          YH               D + + VKVN
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALE----VYH---------------DMLCEGVKVN 483

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           K  +DS     ++  L Q    ++A ++F +   +   +      +L+  L   G +  A
Sbjct: 484 KFIVDS-----LVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTA 538

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR----KRENSMINGSVIA 229
            K   E+  R +    + + VFI   C   K  +  S L E+R    K + S  N  +++
Sbjct: 539 FKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVS 598

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                  C+     +A K+L E+++   KP+ I Y  +       G+V + + +L +   
Sbjct: 599 ------HCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRS 348
            G +P +  +R  +      RR+    ++ E +++     D  V N L+  +      R 
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V    M+  G  P   T + L    CK +  D     Y  +   +   ++ ++N ++ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L + GR+ EA  V+ EM++ GL+P+   Y+ L     ++     A +L+ +M   G   
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            + TYN LIS F++ G +  A  LF +M ++GV P + TY  L+ G
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 123/558 (22%), Positives = 216/558 (38%), Gaps = 87/558 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + Y++++     + Q++A   VL  +K   +  + + Y   I    + K  ++AF ++  
Sbjct: 205 VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEG 264

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  N   +     ++L+A L  DG    A  +F EM   G   + + +   I    +  +
Sbjct: 265 MVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 205 LGQVLSMLDEVRKR----------------------------------ENSMINGSVIAV 230
             ++LS+L E+  R                                  +N   NG    V
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI    CK   V+EA +VL E+  +   P+ + +  V   F   G + +     +  ++ 
Sbjct: 385 LI-DALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER 443

Query: 291 GVAPRTNDYREFILGL-----------IVERRICEAKELGEVIV---------SGKFTID 330
           G+ P    Y   I G            +    +CE  ++ + IV         +GK    
Sbjct: 444 GINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEA 503

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             +     GS  S+D  +     + + + G +PT        + L  RN           
Sbjct: 504 MALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAF---KFGQELMDRN----------- 549

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D   YNV ++ LC  G+ +EA   + EM+  GL PD S YN+++ + CR+  
Sbjct: 550 -----MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGE 604

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
              A KL  +M  S    NL TYN L++     G +E A  L + M+  G +P + T+  
Sbjct: 605 TAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRR 664

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----G 565
           +L+   Q   L    ++    +N  +    ++ +T +  LC  G    AT +L      G
Sbjct: 665 VLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSG 724

Query: 566 LSSD--------LGHSDS 575
           ++ D        LGH  S
Sbjct: 725 IAPDTITFNALILGHCKS 742



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 111/527 (21%), Positives = 218/527 (41%), Gaps = 38/527 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L    + + +   L+    + ++ +   Y  +I +L +  N  +A  V  E
Sbjct: 345 VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLE 404

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKF 199
           ++   + I P +   +S++      G +D A +    M  RG+  + + +G  I   +KF
Sbjct: 405 MEE--KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKF 462

Query: 200 --------------CENAKLGQVL--SMLDEVR---KRENSMI-----NGSVIAV----- 230
                         CE  K+ + +  S+++ +R   K E +M      +GS +++     
Sbjct: 463 QGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNY 522

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K   +  AFK   EL  R   PD + Y +      ++G   E +  L + R 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRN 582

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
           +G+ P  + Y   I+    +    +A +L   +       +    N L+ G   +     
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    N M+  G  P+  T   + +   +  + D ++++++ +       D+  YN ++ 
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G  R+A  V++EM   G+ PD   +N+L+   C+   L  A   + QM     S 
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+N L+     VG I  A  +   M + G+ P+  TY  L  G  +++N   A  ++
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            + V    +   S  +  +    + G    A +L + +     H  S
Sbjct: 823 CEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTS 869



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 178/422 (42%), Gaps = 10/422 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LLA L+   +   A  +  EM  RGV F  +     +   C N ++    ++ D    
Sbjct: 107 NILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGG 163

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               M +   +++L I GF        A  V D +  +    D + Y  +   F   G V
Sbjct: 164 ITPWMSSAGTLSLLDIAGF---GDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                VL   ++ GV P    Y  FI+     + + EA +L E +V     +D   L+AL
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 338 IGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           +  +   D R   A   F  M + G  P   T   L  +L K  +  EL+ +   + +  
Sbjct: 281 VAGLCR-DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRG 339

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y  ++ +L   G+  E    ++      L P+   Y  L++A C+   +  A+
Sbjct: 340 VVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAE 399

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           ++  +M     S N+ T++ +I+ F + G ++ A      M E+G+ P+  TY +L++G 
Sbjct: 400 QVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF 459

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            +     AA EV++  +   V + + I+ + +  L + G    A  L +  S   G S  
Sbjct: 460 FKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS-GLSLD 518

Query: 576 HV 577
           HV
Sbjct: 519 HV 520


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 202/472 (42%), Gaps = 8/472 (1%)

Query: 79   NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
             F    ++  +++K + +   I     +  ++    +  D+  Y  +I  L + + T  A
Sbjct: 1011 GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA 1070

Query: 139  FSVFNEVKFNCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
              +  ++K NC+ D+       ++  L  DG    AL MF EM   G+    + +   + 
Sbjct: 1071 IKLHEKMKGNCKGDVF--TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 1128

Query: 198  KFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRE 256
              C   +L + L    E+  R    I+  V     +IHG  +    +E    L+ +  R 
Sbjct: 1129 GLCRFGRLKEALEFFKEMEGRG---ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 257  CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
              PD   + I+ +     G V E + +L+  R  G  P    Y   + GL +  ++ +A 
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 317  ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +L E +      ++    N LI G         A  FF  M  KG  P+  T + L   L
Sbjct: 1246 KLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGAL 1305

Query: 376  CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            C+  +     +++  +     F  + +Y V++  LC +G L EA  + Q +K+    P++
Sbjct: 1306 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365

Query: 436  SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
              ++ L++  CR   L  A K +D++  +G   +   YNILI+     G +  A++L   
Sbjct: 1366 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 1425

Query: 496  MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            M EKG  PD+ T+  +++ L +E  +  A ++  +  N +     ++ S  +
Sbjct: 1426 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 183/423 (43%), Gaps = 46/423 (10%)

Query: 184  GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
             V  +T+  GV++    EN  +   + + DE+ K+   ++  +    ++I+G CK ++  
Sbjct: 1016 AVTVTTLVKGVWM----ENG-IPDAVQLFDEMTKK--GLLGDAKTYGILINGLCKARKTG 1068

Query: 244  EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
             A K+ ++++   CK D   Y ++ +     G   E   +  +    G+ P    Y   +
Sbjct: 1069 LAIKLHEKMK-GNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 1127

Query: 304  LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF-NFMIEKGRV 362
             GL    R+ EA E  + +     + D    N+LI  +S       + +F N M+++G  
Sbjct: 1128 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 1187

Query: 363  PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
            P                               D FT    + +++  LC  G++ EA  +
Sbjct: 1188 P-------------------------------DAFT----FTILIDGLCKEGKVGEAQQI 1212

Query: 423  IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            ++ M+ KG +PD+  YN+LM   C    L  A KL++ +   G   N+ +YNILI+ + +
Sbjct: 1213 LELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCK 1272

Query: 483  VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              +I+ A R F  M  KG+ P   TY +L+  LCQ   ++ A ++F +       L  S 
Sbjct: 1273 DQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLST 1332

Query: 543  LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQ 600
                +  LC+ GH   A  L + +       +  V  ILL  +  A ++E A +    I 
Sbjct: 1333 YCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEIS 1392

Query: 601  ESS 603
            ++ 
Sbjct: 1393 KNG 1395



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 5/278 (1%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            L+Y++++  L L  Q+     + + +    I L+   Y  +I    + +   +AF  F E
Sbjct: 1226 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEE 1285

Query: 145  VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            ++           N+L+  L   G +  A K+F EM   G       + V +   C+N  
Sbjct: 1286 MRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGH 1345

Query: 205  LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            L + + +   ++K E+   N  V ++L + G C+  ++EEA+K  DE+     +PD IAY
Sbjct: 1346 LEEAMDLFQSIKKTEHKP-NIEVFSIL-LDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 1403

Query: 265  RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             I+       G + E   +L +  + G  P +  +   I  L+ E  I EA +L E + +
Sbjct: 1404 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 1463

Query: 325  GKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKG 360
              F+ D+ V + L+  ++S DP+  +A+V     ++KG
Sbjct: 1464 RNFSPDEAVTSMLL-CLASFDPQWHAALVSLPNALQKG 1500



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 349  AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            AI  F+  +    +P   T ++L  ++ K      +  +Y+ ++      D+ + N+++ 
Sbjct: 930  AIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIH 989

Query: 409  FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
              C+   +   +GV     ++G +PD     +L++    E+ +  A +L+D+M   G  G
Sbjct: 990  CCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLG 1049

Query: 469  NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + KTY ILI+   +  +   A++L H  ++     D  TY  +++ LC++     A ++F
Sbjct: 1050 DAKTYGILINGLCKARKTGLAIKL-HEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMF 1108

Query: 529  NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            ++ +   ++    + S+ M  LCR G    A +       RG+S+D+
Sbjct: 1109 SEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADV 1155


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 3/345 (0%)

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
           FS  GF  ++   C+ + +GQ + +LDE+R + +      V   ++I+G CK  R++EA 
Sbjct: 80  FSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSK--PDVVTYNVLINGICKEGRLDEAI 137

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           K L+ +    C+P+ I + I+       G   + E +L    + G +P    +   I  L
Sbjct: 138 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 197

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             +  +  A ++ E +     T +    N L+ G         AI + + M+ +G  P +
Sbjct: 198 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 257

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L   LCK  K D  VE+   LS+      + +YN ++  L   G+   A  ++ E
Sbjct: 258 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 317

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M+RKGL PD+  Y+SL+    RE  +  A K +  +   G   N  TYN ++    +  +
Sbjct: 318 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 377

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            + A+     M+ K   P   TYT L+EG+  E   + A ++ N+
Sbjct: 378 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNE 422



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 34/316 (10%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   V +A K+LDE+R +  KPD + Y ++       G + E    L      G  P  
Sbjct: 93  CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 152

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
                 I   I+ R +C          +G++   + +L+                    M
Sbjct: 153 ------ITHNIILRSMCS---------TGRWMDAEKLLSD-------------------M 178

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + KG  P++ T + L   LC++      +++ + +  +    +  SYN ++   C   ++
Sbjct: 179 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 238

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A   +  M  +G  PD+  YN+L+ A C++  +  A ++ +Q+ + GCS  L TYN +
Sbjct: 239 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 298

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I   S+VG+ E A++L   M  KG+ PD  TY+SL+ GL +E  +  A + F+      +
Sbjct: 299 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 358

Query: 537 MLARSILSTFMISLCR 552
                  ++ M+ LC+
Sbjct: 359 RPNAITYNSIMLGLCK 374



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+   + M  KG  P + T + L   +CK  + DE ++    + +     ++ ++N+++ 
Sbjct: 101 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 160

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            +C++GR  +A  ++ +M RKG  P V  +N L+   CR+ LL  A  + ++M   GC+ 
Sbjct: 161 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 220

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  +YN L+  F +  +++ A+     M+ +G  PD  TY +LL  LC++  +  A E+ 
Sbjct: 221 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 280

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSL 583
           N+  +          +T +  L + G    A KLL     +GL  D+    S   L+  L
Sbjct: 281 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS---LVSGL 337

Query: 584 ADAREVEMAIE 594
           +   +V+ AI+
Sbjct: 338 SREGKVDEAIK 348



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%)

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           +LS  S   +  CK +   + +++   +       D+ +YNV+++ +C  GRL EA   +
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             M   G  P+V  +N ++ + C       A+KL   M   GCS ++ T+NILI+     
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G +  A+ +   M   G  P++ +Y  LL G C+E  +  A E  +  V+          
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260

Query: 544 STFMISLCRRGHFLVATKLLRGLSS 568
           +T + +LC+ G   VA ++L  LSS
Sbjct: 261 NTLLTALCKDGKVDVAVEILNQLSS 285



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 14/240 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           LR   SPS+V   I    L    L     +   + P    +P  LSY+ +L      +++
Sbjct: 179 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 238

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L  +       D   Y  ++ +L +      A  + N++  + +   P +   N
Sbjct: 239 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL--SSKGCSPVLITYN 296

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  L+  G  + A+K+ DEM  +G++   I +   +       K+ + +    ++   
Sbjct: 297 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 356

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N++   S++      G CK ++ + A   L  +  + CKP    Y I+ E     G
Sbjct: 357 GIRPNAITYNSIML-----GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 411



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L +L    +++    +L Q+     +     Y  +I  L +   T++A  + +E
Sbjct: 258 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 317

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++   + + P+I   +SL++ L+ +G +D A+K F ++   G+  + I +   +   C++
Sbjct: 318 MRR--KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 375

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            +  + +  L  +  +       +    ++I G       +EA  +L+EL
Sbjct: 376 RQTDRAIDFLAYMISKRCKPTEATY--TILIEGIAYEGLAKEALDLLNEL 423


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 35/466 (7%)

Query: 54  RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           R INP ++T+ +L  GFF +  Q          YH               D + + VKVN
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALE----VYH---------------DMLCEGVKVN 483

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           K  +DS     ++  L Q    ++A ++F +   +   +      +L+  L   G +  A
Sbjct: 484 KFIVDS-----LVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTA 538

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR----KRENSMINGSVIA 229
            K   E+  R +    + + VFI   C   K  +  S L E+R    K + S  N  +++
Sbjct: 539 FKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVS 598

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                  C+     +A K+L E+++   KP+ I Y  +       G+V + + +L +   
Sbjct: 599 ------HCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRS 348
            G +P +  +R  +      RR+    ++ E +++     D  V N L+  +      R 
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V    M+  G  P   T + L    CK +  D     Y  +   +   ++ ++N ++ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L + GR+ EA  V+ EM++ GL+P+   Y+ L     ++     A +L+ +M   G   
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            + TYN LIS F++ G +  A  LF +M ++GV P + TY  L+ G
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 123/558 (22%), Positives = 216/558 (38%), Gaps = 87/558 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + Y++++     + Q++A   VL  +K   +  + + Y   I    + K  ++AF ++  
Sbjct: 205 VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEG 264

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  N   +     ++L+A L  DG    A  +F EM   G   + + +   I    +  +
Sbjct: 265 MVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 205 LGQVLSMLDEVRKR----------------------------------ENSMINGSVIAV 230
             ++LS+L E+  R                                  +N   NG    V
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI    CK   V+EA +VL E+  +   P+ + +  V   F   G + +     +  ++ 
Sbjct: 385 LI-DALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER 443

Query: 291 GVAPRTNDYREFILGL-----------IVERRICEAKELGEVIV---------SGKFTID 330
           G+ P    Y   I G            +    +CE  ++ + IV         +GK    
Sbjct: 444 GINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEA 503

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             +     GS  S+D  +     + + + G +PT        + L  RN           
Sbjct: 504 MALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAF---KFGQELMDRN----------- 549

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D   YNV ++ LC  G+ +EA   + EM+  GL PD S YN+++ + CR+  
Sbjct: 550 -----MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGE 604

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
              A KL  +M  S    NL TYN L++     G +E A  L + M+  G +P + T+  
Sbjct: 605 TAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRR 664

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----G 565
           +L+   Q   L    ++    +N  +    ++ +T +  LC  G    AT +L      G
Sbjct: 665 VLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSG 724

Query: 566 LSSD--------LGHSDS 575
           ++ D        LGH  S
Sbjct: 725 IAPDTITFNALILGHCKS 742



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LLA L+   +   A  +  EM  RGV F  +     +   C N ++    ++ D    
Sbjct: 107 NILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD---- 159

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R   +    VI    +I G+C+      A  V D +  +    D + Y  +   F   G 
Sbjct: 160 RGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ 219

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V     VL   ++ GV P    Y  FI+     + + EA +L E +V     +D   L+A
Sbjct: 220 VDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSA 279

Query: 337 LIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           L+  +   D R   A   F  M + G  P   T   L  +L K  +  EL+ +   + + 
Sbjct: 280 LVAGLCR-DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSR 338

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y  ++ +L   G+  E    ++      L P+   Y  L++A C+   +  A
Sbjct: 339 GVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEA 398

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +++  +M     S N+ T++ +I+ F + G ++ A      M E+G+ P+  TY +L++G
Sbjct: 399 EQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDG 458

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
             +     AA EV++  +   V + + I+ + +  L + G    A  L +  S   G S 
Sbjct: 459 FFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS-GLSL 517

Query: 575 SHV 577
            HV
Sbjct: 518 DHV 520



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 117/543 (21%), Positives = 226/543 (41%), Gaps = 41/543 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L    + + +   L+    + ++ +   Y  +I +L +  N  +A  V  E
Sbjct: 345 VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLE 404

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKF 199
           ++   + I P +   +S++      G +D A +    M  RG+  + + +G  I   +KF
Sbjct: 405 MEE--KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKF 462

Query: 200 --------------CENAKLGQVL--SMLDEVR---KRENSMI-----NGSVIAV----- 230
                         CE  K+ + +  S+++ +R   K E +M      +GS +++     
Sbjct: 463 QGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNY 522

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K   +  AFK   EL  R   PD + Y +      ++G   E +  L + R 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRN 582

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
           +G+ P  + Y   I+    +    +A +L   +       +    N L+ G   +     
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    N M+  G  P+  T   + +   +  + D ++++++ +       D+  YN ++ 
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G  R+A  V++EM   G+ PD   +N+L+   C+   L  A   + QM     S 
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+N L+     VG I  A  +   M + G+ P+  TY  L  G  +++N   A  ++
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLAD- 585
            + V    +   S  +  +    + G    A +L + +     H  S  + IL+    D 
Sbjct: 823 CEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWYDL 882

Query: 586 ARE 588
           ARE
Sbjct: 883 ARE 885



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D +  N+L+ + CR  LLRPA  L      +  +     YNIL++  S+       L   
Sbjct: 72  DPASLNALLYSHCRLRLLRPAIALLRSSRPTTVA-----YNILLAALSDHAHAPAVLA-- 124

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             M ++GV  D  T  +LL GLC+   + AA
Sbjct: 125 -EMCKRGVPFDGVTVNTLLAGLCRNGQVDAA 154


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 119/509 (23%), Positives = 224/509 (44%), Gaps = 20/509 (3%)

Query: 31  TPLLEQTLHQLG--LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
            P LE  L + G  LR+ L+  ++ R  +  +L     A  FF WAS+QP + H   +Y 
Sbjct: 65  VPKLELALQESGVVLRNGLTERVLNRCGDAGIL-----AYKFFVWASKQPCYRHCYENYK 119

Query: 89  SILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-K 146
           +++K LS  +Q  A+ ++L++++  N + + S V+  ++      +   KA  V +E+ K
Sbjct: 120 AMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPK 179

Query: 147 FNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           + CE   P+  +   LL  L  +G +  A  +F++M  R    S   F   ++ +C+  K
Sbjct: 180 YGCE---PDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FSPSLKHFTCLLYGWCKEGK 235

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +   +L  V+ RE       V+   ++ G+    ++ +AF +L E+R + C P+  +Y
Sbjct: 236 LLEAKHVL--VQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSY 293

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIV 323
            I+ +       + E   V  +  + G       Y   + G    R I +  + L  +I 
Sbjct: 294 TILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQ 353

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
            G        L+ ++      +          M + G +P LS  + + +  CK  + + 
Sbjct: 354 KGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNA 413

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSL 441
            V+ +  +  +     ++++ +M++     G L EA    +EM  +GL           L
Sbjct: 414 GVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGLLSSRQYGILKDL 473

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + A  R + L  AK LW  +   GC  N+ ++ I I      G ++ A     +M++  +
Sbjct: 474 LNALLRGEKLELAKDLWSCIVTKGCELNVDSWTIWIHALFSNGHVKEACSYCLDMMDADL 533

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNK 530
            P   T+  L+ GL +  N Q A E+  K
Sbjct: 534 MPKPETFAKLMRGLRKLYNRQFAAEITEK 562



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 5/352 (1%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V ++L+E+R R+NS++  S + V+++  F   + V +A +VLDE+    C+PD   
Sbjct: 130 QFGAVWALLEEMR-RDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYV 188

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   + +  R +  +P    +   + G   E ++ EAK +   + 
Sbjct: 189 FGCLLDALCKNGSVKEAASLFEDMR-VRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMR 247

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F  D  V N L+ G  ++     A      +  KG  P  ++ + L + LC + K D
Sbjct: 248 EAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMD 307

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + V+  +  +    D+ +Y  +VS  C    + + Y ++Q M +KG  P+   Y  LM
Sbjct: 308 EAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLM 367

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  +++ L   K+L  +M   GC  +L  YN++I    ++GE+   +  ++ M   G++
Sbjct: 368 LAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLS 427

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCR 552
           P   T+  ++ G      L  A + F + V   ++ +R   IL   + +L R
Sbjct: 428 PGLDTFVIMINGFLGHGYLVEACQYFKEMVERGLLSSRQYGILKDLLNALLR 479


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 221/478 (46%), Gaps = 20/478 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           ++ SL++    QK    F+ V   C+ + P++    + +      G ++ A+K+F +M  
Sbjct: 245 LLTSLVRANEFQKCCEAFDVV---CKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 301

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGK 240
            GV  + + F   I       +  +     +++ +R  E ++I  S++    + G  + K
Sbjct: 302 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSIL----VKGLTRAK 357

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+ +A+ VL E+  +   P+ I Y  + + F   GS+ +   +       G++  ++ Y 
Sbjct: 358 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 417

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEK 359
             I G     +   A+ L + ++S  F ++     ++I  + S +   SA+ F   M+ +
Sbjct: 418 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 477

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P    L+ L   LCK  K  + +E++       +  D  + N ++  LC +G+L EA
Sbjct: 478 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 537

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + + +E+  +G   D   YN+L+  CC +  L  A    D+M   G   +  TY+ILI  
Sbjct: 538 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 597

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              + ++E A++ + +    G+ PD  TY+ +++G C+    +   E F++ ++ +V   
Sbjct: 598 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN 657

Query: 540 RSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
             + +  + + CR G   +A +L      +G+S +   S ++  L+K ++    VE A
Sbjct: 658 TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN---SATYTSLIKGMSIISRVEEA 712



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 108/511 (21%), Positives = 200/511 (39%), Gaps = 69/511 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++K L+ +++I     VLK++       +  VY  +I S I+  +  KA  + + 
Sbjct: 344 ITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDL 403

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+L+     +G  DNA ++  EM   G   +   F   I   C +  
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 463

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLI-------------------------------- 232
               L  + E+  R N    G ++  LI                                
Sbjct: 464 FDSALRFVGEMLLR-NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 522

Query: 233 --IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
             +HG C+  +++EAF++  E+  R C  D ++Y  +         + E  + L +  K 
Sbjct: 523 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 582

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y   I GL    ++ EA                                  I
Sbjct: 583 GLKPDNYTYSILICGLFNMNKVEEA----------------------------------I 608

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F++     G +P + T S +    CK  +++E  E +  + + +   +   YN ++   
Sbjct: 609 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 668

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C SGRL  A  + ++MK KG+ P+ + Y SL++       +  AK L+++M   G   N+
Sbjct: 669 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 728

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  LI  + ++G++     L   M  K V P+  TYT ++ G  ++ N+  A  + N+
Sbjct: 729 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 788

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATK 561
                ++        F+    ++G  L A K
Sbjct: 789 MREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     + Y+ ++++   S +++    + + +K   I+ +S+ Y  +I  +      +
Sbjct: 655 QPN----TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 710

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK---MFDEMSHRGVEFSTIGFG 193
           +A  +F E++   E + P + +   A++   G +   +K   +  EM  + V  + I + 
Sbjct: 711 EAKLLFEEMRM--EGLEPNVFH-YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 767

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           V I  +  +  + +   +L+E+R  E  ++  S+     I+G+ K   V EAFK  DE
Sbjct: 768 VMIGGYARDGNVTEASRLLNEMR--EKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 224/503 (44%), Gaps = 15/503 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++Y  ++     S ++     +L++++   +  D  VY  +I +     + +
Sbjct: 182 RPNL----VTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIE 237

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
               +F+E+      + P +   + L+  L   G    A +M  +M+ RGV    + + V
Sbjct: 238 TGRELFDEMLR--RKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTV 295

Query: 195 FIWKFCENAKLGQVLSMLD-EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
                C+N + G  + +LD  V+K E     G++   ++++G CK  R+++AF V++ + 
Sbjct: 296 LADGLCKNGRAGDAIKVLDLMVQKGEEP---GTLTYNVVVNGLCKEDRMDDAFGVVEMMV 352

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFILGLIVERR 311
            +  KPD + Y  + +     G + E   + K     K  V P        I GL  E R
Sbjct: 353 KKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGR 412

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + +A  +   +V      +    N LI G +++     A+  + + +E G  P   T S 
Sbjct: 413 VHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSV 472

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +   LCK         ++  +  +     +  YN +++ LC    L +A  + QEM+   
Sbjct: 473 MINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVN 532

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
            + DV  +N +++   +   ++ AK+L  +MF      +  T++ILI++FS++G ++ A+
Sbjct: 533 HNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAM 592

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L+  M+  G  P    + SLL+G   +   +    + ++  + DV+L   + ST +  L
Sbjct: 593 GLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACL 652

Query: 551 CRRGHFLVATKLLRGLSSDLGHS 573
           C     L   K+L   S    H+
Sbjct: 653 CHMSRNLDVEKILPKFSQQSEHT 675



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 182/419 (43%), Gaps = 39/419 (9%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +   M+ RG   +     + +  FC + +  + +S+  ++++  + ++   V    +
Sbjct: 96  AFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTL 155

Query: 233 IHGFCKGKRVEEAFKVLDELRI-RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           ++GFCK KR+ EA  + + ++   +C+P+ + Y ++ + +   G V E   +L++  + G
Sbjct: 156 VNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREG 215

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAI 350
           +      Y   I     E  I   +EL + ++  K + +    + L+  +      R A 
Sbjct: 216 LKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREAS 275

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  +G  P +   + L+  LCK  ++ + ++V  ++          +YNV+V+ L
Sbjct: 276 EMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGL 335

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW------------ 458
           C   R+ +A+GV++ M +KG  PD   YN+L++  C    +  A  LW            
Sbjct: 336 CKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKP 395

Query: 459 -------------------------DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
                                      M   G  GN+ TYN LI  +    ++  AL+L+
Sbjct: 396 DVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLW 455

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +E G +P++ TY+ ++ GLC+   L  A  +F K  +  +       +  M SLCR
Sbjct: 456 KYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCR 514



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 128/271 (47%), Gaps = 14/271 (5%)

Query: 328 TIDDD--------VLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           TID+D          + LI ++       A+V  ++ M+    +P  ++LS L+++    
Sbjct: 31  TIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNT 90

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVS 436
           +       V  +++   +  ++ + N+++   C SG+  +A  +  +MKR    + PD  
Sbjct: 91  HHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCV 150

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHN 495
            YN+L+   C+   L  A+ L++ M   G C  NL TY++LI  + + GE+   L L   
Sbjct: 151 TYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEE 210

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M  +G+  D   Y+SL+   C E +++   E+F++ +   V       S  M  L R G 
Sbjct: 211 MEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGR 270

Query: 556 FLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           +  A+++L+ +++     D  V+    LAD 
Sbjct: 271 WREASEMLKDMTARGVRPD--VVAYTVLADG 299


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 210/492 (42%), Gaps = 85/492 (17%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  FN  ++Q  F+H+  +Y +IL  L+ S++  AID+VL Q+          ++  ++
Sbjct: 146 ALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLM 205

Query: 127 PSLIQGKNTQKAFSVFNEV------KFNCEDIGPEICNSLL------AVLASDGYIDNAL 174
               +    ++   +F+ +      K + + I    C +LL      ++ A +G ID+A 
Sbjct: 206 KHFSKLSLHERVVEMFDAIXPIVREKPSLKAIS--TCLNLLVESNQSSITAKNGDIDSAF 263

Query: 175 KMFDEMSHRGVEFST-IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           ++ +EM    V +   I +   I   C + +L + + + +E+  ++  + +      LI 
Sbjct: 264 EVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALI- 322

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +GFC G +V+ A K+++ ++   C P+                VF               
Sbjct: 323 NGFCHGXKVDRALKIMEFMKKNGCNPN----------------VF--------------- 351

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
               +Y   + G   E R+ EAKE+                                  F
Sbjct: 352 ----NYSALMNGFCKEGRLEEAKEV----------------------------------F 373

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M   G  P     + L    C+  + DE +E+ K +  N    D  ++NV++  LC  
Sbjct: 374 DEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCRE 433

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR  EA G+++ +  +G+  + + Y  ++ + CRE  L+ A +L   M   G   +  T 
Sbjct: 434 GRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATS 493

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N L+    E G++  A+     +LE G  P+  ++  L+E +C+E  L  AFE+ +  V 
Sbjct: 494 NELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLVI 553

Query: 534 HDVMLARSILST 545
            + +L+   L+T
Sbjct: 554 QEPILSNQELTT 565



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 9/237 (3%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           P L T S L   LC   +  E +E+++ ++S +    D  +YN +++  C   ++  A  
Sbjct: 277 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALK 336

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++ MK+ G +P+V  Y++LM   C+E  L  AK+++D+M + G   +   Y  LI+ F 
Sbjct: 337 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFC 396

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G ++ A+ L  +M E     D  T+  +L GLC+E   + A  +  +     V L ++
Sbjct: 397 RAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKA 456

Query: 542 ILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
                + SLCR G    AT+L+     RG+   L H  +   LL  L +A +V  A+
Sbjct: 457 SYRIVLNSLCREGELQKATQLVGLMLGRGV---LPHFATSNELLVHLCEAGKVGDAV 510



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 16/241 (6%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           ++N L GS      + AI  F  M+ K ++ P   T + L    C   K D  +++ + +
Sbjct: 285 LINGLCGSGRL---KEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFM 341

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             N    ++ +Y+ +++  C  GRL EA  V  EMK  GL PD   Y +L+   CR   +
Sbjct: 342 KKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRV 401

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A +L   M  + C  +  T+N+++      G  E A  +   +  +GV  +  +Y  +
Sbjct: 402 DEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIV 461

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF------MISLCRRGHFLVATKLLRG 565
           L  LC+E  LQ A ++        +ML R +L  F      ++ LC  G    A   L G
Sbjct: 462 LNSLCREGELQKATQLVG------LMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLG 515

Query: 566 L 566
           L
Sbjct: 516 L 516


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 281/657 (42%), Gaps = 29/657 (4%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLR-DSLSPSLVARVINPYL 60
           + R    +  RI + +    +  +  + W+ +L+       +R   +SP +  R+ +   
Sbjct: 20  SFRSHLPITPRIKKLVSDTVSILKTQQNWSQILDDCFADEEVRFVDISPFVFDRIQDV-- 77

Query: 61  LTHHSLALGFFNWAS--QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
                + +  F+W S  ++  F  +  +  S LK L+  R  N I+ VL  ++   + L 
Sbjct: 78  ----EIGVKLFDWLSSEKKDEFFSNGFACSSFLKLLARYRIFNEIEDVLGNLRNENVKLT 133

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKM 176
                 ++ +  +  +  KA  +++ V     D  P++  CNSLL++L     + +A K+
Sbjct: 134 HEALSHVLHAYAESGSLSKAVEIYDYV-VELYDSVPDVIACNSLLSLLVKSRRLGDARKV 192

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           +DEM  RG         + +   C   K+ +V   L E R  +  + N  V    II G+
Sbjct: 193 YDEMCDRGDSVDNYSTCILVKGMCNEGKV-EVGRKLIEGRWGKGCIPN-IVFYNTIIGGY 250

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   +E A+ V  EL+++   P    +  +   F   G     + +L + ++ G+  R 
Sbjct: 251 CKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGL--RV 308

Query: 297 NDYREFILGLIVER-----RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
           + +  F+  +I  +     ++  A+ +G  I++     D    N LI  +     +  A+
Sbjct: 309 SVW--FLNNIIDAKYRHGYKVDPAESIG-WIIANDCKPDVATYNILINRLCKEGKKEVAV 365

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F +   +KG +P   + + L +  CK  + D   ++   ++      D+ +Y +++  L
Sbjct: 366 GFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGL 425

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SG + +A  +  ++  +G+ PD + YN LM   C+     PAK L+ +M       + 
Sbjct: 426 VVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDA 485

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  LI  F   G+ + A ++F   +EKGV  D   + ++++G C+   L  A    N+
Sbjct: 486 YVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNR 545

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
                ++  +   ST +    ++     A K+ R +  +    +  ++  L+       +
Sbjct: 546 MNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGD 605

Query: 589 VEMAIEHIKWIQ--ESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            +MA E  K +Q  +  P ++   +     +  SS+  + +      +  KC+ +E+
Sbjct: 606 FKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEV 662



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 149/384 (38%), Gaps = 53/384 (13%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           + + I + C+  K    +  LDE  K+   +I  ++    +I  +CK K  + A K+L +
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKK--GLIPNNLSYAPLIQAYCKSKEYDIASKLLLQ 405

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R CKPD + Y I+     + G + +   +  K    GV+P    Y   + GL    R
Sbjct: 406 MAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGR 465

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG---------- 360
              AK L   ++      D  V   LI G + S D   A   F+  +EKG          
Sbjct: 466 FLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNA 525

Query: 361 -------------------------RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                                     VP   T S +     K+      +++++ +  N 
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPA 454
              ++ +Y  +++  C  G  + A    +EM+ + L P+V  Y +L+ +  +E   L  A
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKA 645

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSE------VGEIEGA--------LRLFHNMLEKG 500
              W+ M  + C  N  T+N L+  F +      + E +G+           FH M   G
Sbjct: 646 VYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDG 705

Query: 501 VAPDATTYTSLLEGLCQETNLQAA 524
            +  A  Y S L  LC    ++ A
Sbjct: 706 WSDHAAAYNSALVCLCVHGMVKTA 729



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 164/434 (37%), Gaps = 66/434 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKV--NKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           ++Y  ++  L +S  ++  D+V  +VK+    ++ D+++Y  ++  L +      A  +F
Sbjct: 416 VTYGILIHGLVVSGHMD--DAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLF 473

Query: 143 NEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E+     +I P+  +  +L+      G  D A K+F     +GV+   +     I  FC
Sbjct: 474 SEMLD--RNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFC 531

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
            +  L + L+ ++  R  E  ++        II G+ K + +  A K+   +   +CKP+
Sbjct: 532 RSGMLDEALACMN--RMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPN 589

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  +   F   G     E   K+ +   + P    Y   I  L  E    E      
Sbjct: 590 VVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLE------ 643

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                                       A+ ++  M+    VP   T + L +   K+  
Sbjct: 644 ---------------------------KAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTS 676

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
                   KVL+  D     +S ++   F                MK  G     + YNS
Sbjct: 677 G-------KVLAEPDGSNHGQS-SLFSEFF-------------HRMKSDGWSDHAAAYNS 715

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL-FHNMLEK 499
            +   C   +++ A    D+M   G S +  ++  ++  F  VG  +    + F N+ EK
Sbjct: 716 ALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRNMDFCNLGEK 775

Query: 500 GVAPDATTYTSLLE 513
           G+   A  Y+ +LE
Sbjct: 776 GLEV-AVRYSQVLE 788


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 212/482 (43%), Gaps = 56/482 (11%)

Query: 83  SPLSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           + ++Y +I+  +      ++A++ + K  +V+ I  +  +Y  II SL +      A ++
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNL 277

Query: 142 FNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F E++   + I P++   NS++    S G   +A ++  EM  R +    + +   I  F
Sbjct: 278 FTEMQE--KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  K  +   + DE+  R   +I  ++    +I GFCK  R++ A  +   +  + C P
Sbjct: 336 VKEGKFFEAAELYDEMLPR--GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSP 393

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   +  + + +     + +   +L +  + G+   T  Y   I G              
Sbjct: 394 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF------------- 440

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                            L+G     D  +A+     MI  G  P + T + L   LC   
Sbjct: 441 ----------------CLVG-----DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 479

Query: 380 KSDELVEVYKV-------LSANDYFTDME----SYNVMVSFLCTSGRLREAYGVIQEMKR 428
           K  + +E++K        L A+  F  +E    +YN+++  L   G+  EA  + +EM  
Sbjct: 480 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 539

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G+ PD   Y+S+++  C++  L  A +++  M +   S N+ T+N LI+ + + G ++ 
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDD 599

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILS 544
            L LF  M  +G+  DA  Y +L+ G  +  N+  A ++F +     V  D +  R++L+
Sbjct: 600 GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 659

Query: 545 TF 546
            F
Sbjct: 660 GF 661



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 183/438 (41%), Gaps = 45/438 (10%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K    +    V   
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKL--GLHPDVVTFT 153

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++HG C   RV EA     ++    C+P+ + +  +       G + E   +L +  + 
Sbjct: 154 TLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y     G IV+                             G     D  SA+
Sbjct: 214 GLQPTQITY-----GTIVD-----------------------------GMCKKGDTVSAL 239

Query: 351 VFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                M E   + P +   S +  +LCK  +  +   ++  +     F D+ +YN M+  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C+SGR  +A  ++QEM  + + PDV  YN+L+ A  +E     A +L+D+M   G   N
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TYN +I  F +   ++ A  +F+ M  KG +PD  T+T+L++G C    +    E+ +
Sbjct: 360 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 419

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLA 584
           +     ++      +T +   C  G    A  L +     G+  D+   ++   LL  L 
Sbjct: 420 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT---LLDGLC 476

Query: 585 DAREVEMAIEHIKWIQES 602
           D  +++ A+E  K +Q+S
Sbjct: 477 DNGKLKDALEMFKAMQKS 494



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/503 (20%), Positives = 209/503 (41%), Gaps = 54/503 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +L+  L  +G I  A+ + D M   G++ + I +G  +   C   K G  +S L+ +RK
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC---KKGDTVSALNLLRK 244

Query: 218 RE-------NSMINGSVIAVL------------------------------IIHGFCKGK 240
            E       N +I  ++I  L                              +I GFC   
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R  +A ++L E+  R+  PD + Y  +   F   G  FE   +  +    G+ P T  Y 
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 364

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I G   + R+  A+++  ++ +   + D      LI G   +      +   + M  +
Sbjct: 365 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 424

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G V    T + L    C     +  +++ + + ++    D+ + N ++  LC +G+L++A
Sbjct: 425 GLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 484

Query: 420 YGVIQEMKR-----------KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             + + M++            G++PDV  YN L+     E     A++L+++M   G   
Sbjct: 485 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  TY+ +I    +   ++ A ++F +M  K  +P+  T+ +L+ G C+   +    E+F
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF 604

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADA 586
            +     ++    I  T +    + G+   A  + + + S   + D+  I  +L      
Sbjct: 605 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 664

Query: 587 REVEMAIEHIKWIQESSPTMLQE 609
            E+E A+  ++ +Q S    L++
Sbjct: 665 EELERAVAMLEDLQMSVGYQLED 687


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/491 (21%), Positives = 206/491 (41%), Gaps = 43/491 (8%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           V+  +I + +Q +  ++    F  ++     +    CN+LL  +   G++D A K++++ 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   +     + +   C++ KL  V   L E+   E  +    V    +++ +C+  
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEME--EKGVYADLVTYNTLVNAYCRRG 273

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            V EAF ++D +  +  KP    Y  +       GS    + VL +   +G+ P    + 
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 301 EFILGLIVERRICEAK-----------------------------ELGEVI-----VSGK 326
             ++    +  + EA+                             ELG  +     + G 
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 327 FTIDDDVLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
             + D V+  ++  G   + D   A+   N M+E+G V  + T + L   LC+    D+ 
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDA 453

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E++K +     F D  +   ++   C  G + +A  + + M  + L PDV  YN+LM+ 
Sbjct: 454 DELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDG 513

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  AK+LW  M +     +  +++ILI+ F  +G +  A RL+  M EKG+ P 
Sbjct: 514 FCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPT 573

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-----RGHFLVA 559
             T  ++++G  +  NL  A +  N  ++  V       +T + S  +     R  FL+ 
Sbjct: 574 LVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLIN 633

Query: 560 TKLLRGLSSDL 570
               RGL  +L
Sbjct: 634 NMEERGLLPNL 644



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 171/407 (42%), Gaps = 79/407 (19%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A ++F+EM  RGV    I F   +  F  N +LG+ L+  ++++     ++  +VI  ++
Sbjct: 348 AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV--GLVPDTVIYTIL 405

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I+G+C+   V  A K+ +E+  R C  D + Y  +                         
Sbjct: 406 INGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLN----------------------- 442

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
                       GL   + + +A EL + +V      D   L  LI G     +   A+ 
Sbjct: 443 ------------GLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALS 490

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F  M  +   P + T + L    CK  + ++  E++  + + + F    S++++++  C
Sbjct: 491 LFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFC 550

Query: 412 TSGRLREAYGVIQEMKRKGLD-----------------------------------PDVS 436
           + G + EA+ +  EMK KG+                                    PD  
Sbjct: 551 SLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCI 610

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+L+ +  +E+    A  L + M   G   NL TYN ++  FS  G ++ A  + H M
Sbjct: 611 TYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKM 670

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           ++KG+ PD +TYTSL+ G   + N++ AF V      HD ML R  +
Sbjct: 671 IDKGINPDKSTYTSLINGYVSKDNMKEAFRV------HDEMLQRGFV 711



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 153/354 (43%), Gaps = 3/354 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +S+ SI+   S + ++    +  +++K   +  D+ +Y  +I    +  +   A  + NE
Sbjct: 365 ISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNE 424

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+LL  L     +D+A ++F EM  RGV          I  +C++  
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + LS+ + +  R  S+    V    ++ GFCK   +E+A ++  ++  RE  P +I++
Sbjct: 485 MTKALSLFETMTLR--SLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISF 542

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+   F  +G V E   +  + ++ G+ P        I G +    + +A +    ++S
Sbjct: 543 SILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMIS 602

Query: 325 GKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D    N LI S V   +   A    N M E+G +P L T + +     +  +  E
Sbjct: 603 EGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQE 662

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
              V   +       D  +Y  +++   +   ++EA+ V  EM ++G  PD  F
Sbjct: 663 AEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 221/478 (46%), Gaps = 20/478 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           ++ SL++    QK    F+ V   C+ + P++    + +      G ++ A+K+F +M  
Sbjct: 221 LLTSLVRANEFQKCCEAFDVV---CKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 277

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGK 240
            GV  + + F   I       +  +     +++ +R  E ++I  S++    + G  + K
Sbjct: 278 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSIL----VKGLTRAK 333

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+ +A+ VL E+  +   P+ I Y  + + F   GS+ +   +       G++  ++ Y 
Sbjct: 334 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 393

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEK 359
             I G     +   A+ L + ++S  F ++     ++I  + S +   SA+ F   M+ +
Sbjct: 394 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 453

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P    L+ L   LCK  K  + +E++       +  D  + N ++  LC +G+L EA
Sbjct: 454 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 513

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + + +E+  +G   D   YN+L+  CC +  L  A    D+M   G   +  TY+ILI  
Sbjct: 514 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 573

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              + ++E A++ + +    G+ PD  TY+ +++G C+    +   E F++ ++ +V   
Sbjct: 574 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN 633

Query: 540 RSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
             + +  + + CR G   +A +L      +G+S +   S ++  L+K ++    VE A
Sbjct: 634 TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN---SATYTSLIKGMSIISRVEEA 688



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 108/511 (21%), Positives = 200/511 (39%), Gaps = 69/511 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++K L+ +++I     VLK++       +  VY  +I S I+  +  KA  + + 
Sbjct: 320 ITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDL 379

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+L+     +G  DNA ++  EM   G   +   F   I   C +  
Sbjct: 380 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 439

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLI-------------------------------- 232
               L  + E+  R N    G ++  LI                                
Sbjct: 440 FDSALRFVGEMLLR-NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 498

Query: 233 --IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
             +HG C+  +++EAF++  E+  R C  D ++Y  +         + E  + L +  K 
Sbjct: 499 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 558

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y   I GL    ++ EA                                  I
Sbjct: 559 GLKPDNYTYSILICGLFNMNKVEEA----------------------------------I 584

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F++     G +P + T S +    CK  +++E  E +  + + +   +   YN ++   
Sbjct: 585 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 644

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C SGRL  A  + ++MK KG+ P+ + Y SL++       +  AK L+++M   G   N+
Sbjct: 645 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 704

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  LI  + ++G++     L   M  K V P+  TYT ++ G  ++ N+  A  + N+
Sbjct: 705 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 764

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATK 561
                ++        F+    ++G  L A K
Sbjct: 765 MREKGIVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     + Y+ ++++   S +++    + + +K   I+ +S+ Y  +I  +      +
Sbjct: 631 QPN----TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 686

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK---MFDEMSHRGVEFSTIGFG 193
           +A  +F E++   E + P + +   A++   G +   +K   +  EM  + V  + I + 
Sbjct: 687 EAKLLFEEMRM--EGLEPNVFH-YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 743

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           V I  +  +  + +   +L+E+R  E  ++  S+     I+G+ K   V EAFK  DE
Sbjct: 744 VMIGGYARDGNVTEASRLLNEMR--EKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 799


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 184/435 (42%), Gaps = 80/435 (18%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL+ +A     D  + + ++M + G+  +   + +FI  FC  ++L   L++L ++ K  
Sbjct: 81  LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMK-- 138

Query: 220 NSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             +  G  I  L  +++GFC G R+ EA  ++D++                         
Sbjct: 139 --LGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV------------------------ 172

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                      ++G  P T  +   + GL    +  EA  L E +V      D     A+
Sbjct: 173 -----------EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV 221

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN-LSKNLCKRNKSDELVEVYKVLSAND 395
           I G     +P  A+   N M EKG++     + N +   LCK    D+  +++  +    
Sbjct: 222 INGLCKRGEPDLALNLLNKM-EKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +YN ++S LC  GR  +A  ++ +M  K ++PD+ F+N+L++A  +E  L  A+
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 456 KLWDQMFAS------------------------------------GCSGNLKTYNILISK 479
           KL+D+M  S                                    G  GN  TY  LI  
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +  + + A  +F  M+  GV PD  TY  LL+GLC   N++ A  VF      D+ L 
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD 460

Query: 540 RSILSTFMISLCRRG 554
               +T + +LC+ G
Sbjct: 461 IVTYTTMIEALCKAG 475



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/499 (20%), Positives = 204/499 (40%), Gaps = 51/499 (10%)

Query: 40  QLGLRDSLSPSLVARVINPYLLTHHSLALGFFN---------WASQQPNFTHSP--LSYH 88
           QL L  ++   ++     P ++T +SL  GF +            Q     + P  +++ 
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +++  L    + +   ++++++ V     D   Y  +I  L +      A ++ N+++  
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
             +    I N+++  L    ++D+A  +F++M  +G++     +   I   C   +    
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304

Query: 209 LSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRI 266
             +L ++ ++    IN  ++    +I  F K  ++ EA K+ DE+ + + C PD +AY  
Sbjct: 305 SRLLSDMLEKN---INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNT 361

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + F     V E   V ++  + G+   T  Y   I G    R                
Sbjct: 362 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQAR---------------- 405

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                             D  +A + F  M+  G  P + T + L   LC     +  + 
Sbjct: 406 ------------------DCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALV 447

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V++ +   D   D+ +Y  M+  LC +G++ + + +   +  KG+ P+V  Y ++M   C
Sbjct: 448 VFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 507

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           R+ L   A  L+ +M   G   N  TYN LI      G+   +  L   M   G A DA+
Sbjct: 508 RKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDAS 567

Query: 507 TYTSLLEGLCQETNLQAAF 525
           T+  L+  +  +  L  +F
Sbjct: 568 TF-GLVTNMLHDGRLDKSF 585



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 199/473 (42%), Gaps = 23/473 (4%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+G F    +   F  S + +  +L +++   + + + S+ +Q++   I+ +   Y   I
Sbjct: 59  AIGLFGDMVKSRPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFI 117

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
               +      A ++    K      GP I   NSLL        I  A+ + D+M   G
Sbjct: 118 NYFCRRSQLSLALAILG--KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS----VIAVLIIHGFCKGK 240
            +  T+ F   +    ++ K  + ++++      E  ++ G     V    +I+G CK  
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALV------ERMVVKGCQPDLVTYGAVINGLCKRG 229

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAE---EFKLMGSVFEREVVLKKKRKLGVAPRTN 297
             + A  +L+++   + + D + Y  + +   ++K M   F+   +  K    G+ P   
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD---LFNKMETKGIKPDVF 286

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFM 356
            Y   I  L    R  +A  L   ++      D    NALI + V       A   ++ M
Sbjct: 287 TYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346

Query: 357 IE-KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           ++ K   P +   + L K  CK  + +E +EV++ +S      +  +Y  ++     +  
Sbjct: 347 VKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARD 406

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
              A  V ++M   G+ PD+  YN L++  C    +  A  +++ M       ++ TY  
Sbjct: 407 CDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTT 466

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +I    + G++E    LF ++  KGV P+  TYT+++ G C++   + A  +F
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 120/251 (47%), Gaps = 11/251 (4%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+   + M+E G  P   T + L   L + NK+ E V + + +       D+ +Y  +++
Sbjct: 164 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 223

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G    A  ++ +M++  ++ DV  YN++++  C+   +  A  L+++M   G   
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 283

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TYN LIS     G    A RL  +MLEK + PD   + +L++   +E  L  A +++
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLY 343

Query: 529 NKSVNH-----DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLK 581
           ++ V       DV+   +++  F    C+        ++ R +S    +G++ ++  L+ 
Sbjct: 344 DEMVKSKHCFPDVVAYNTLIKGF----CKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 582 SLADAREVEMA 592
               AR+ + A
Sbjct: 400 GFFQARDCDNA 410



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M++    P++   S L   + K NK D ++ + + +       ++ +Y++ ++
Sbjct: 59  AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           + C   +L  A  ++ +M + G  P +   NSL+   C  + +  A  L DQM   G   
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+  L+    +  +   A+ L   M+ KG  PD  TY +++ GLC+      A  + 
Sbjct: 179 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 238

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGH 555
           NK     +     I +T +  LC+  H
Sbjct: 239 NKMEKGKIEADVVIYNTIIDGLCKYKH 265



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 8/218 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+     M++ G  P++ TL++L    C  N+  E V +   +    Y  D  ++  +V 
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L    +  EA  +++ M  KG  PD+  Y +++   C+      A  L ++M       
Sbjct: 189 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA---- 524
           ++  YN +I    +   ++ A  LF+ M  KG+ PD  TY  L+  LC       A    
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            ++  K++N D++   +++  F+    + G  + A KL
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFV----KEGKLVEAEKL 342



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 2/217 (0%)

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           NLS+ + +  K D+ + ++  +  +  F  +  ++ ++S +    +      + ++M+  
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL 104

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+  ++  Y+  +   CR   L  A  +  +M   G   ++ T N L++ F     I  A
Sbjct: 105 GISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 164

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
           + L   M+E G  PD  T+T+L+ GL Q      A  +  + V              +  
Sbjct: 165 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 224

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           LC+RG   +A  LL  +    G  ++ V++  ++ D 
Sbjct: 225 LCKRGEPDLALNLLNKMEK--GKIEADVVIYNTIIDG 259


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 189/427 (44%), Gaps = 7/427 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL  F+ M H     ST+ F   +      AK+    ++L    + ++  I   V  
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSI---AKMKHYSTVLSLSTQMDSFGIPPDVYT 149

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           + ++I+ FC  +R+  AF VL +L    C+PD   +  +     + G + E   +  K  
Sbjct: 150 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 209

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
             G  P    Y   + GL        A  L   +V      +    N +I S+      +
Sbjct: 210 GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVT 269

Query: 349 -AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A   F+ MI KG  P + T ++L   LC   +   +  +   +  +    ++  ++ +V
Sbjct: 270 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 329

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
             LC  G +  A+ V+  M ++G++PDV  Y +LM+  C    +  A K++D M   GC 
Sbjct: 330 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV 389

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+++YNILI+ + ++  ++ A+ L   M  +G+  D  TY +L+ GLC    LQ A  +
Sbjct: 390 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 449

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLAD 585
           F++ V    +         +  LC+  H   A  LL+ +      +D  V  I +  +  
Sbjct: 450 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 509

Query: 586 AREVEMA 592
           A E+E A
Sbjct: 510 AGELEAA 516



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 177/423 (41%), Gaps = 7/423 (1%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +  +L S++  +  + + S+  Q+    I  D      +I S    +    AFSV 
Sbjct: 111 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 170

Query: 143 NEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            ++ K  C+       N+L+  L  +G I  AL +FD+    G +   + +G  +   C 
Sbjct: 171 AKLLKLGCQPDNTTF-NTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLC- 228

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             K+G   + +  +R         +VIA   II   CK ++V EAF +  E+  +   PD
Sbjct: 229 --KVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPD 286

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              Y  +      +        +L +     + P    +   +  L  E  I  A ++ +
Sbjct: 287 IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVD 346

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +++      D     AL+ G     +   A+  F+ M+ KG VP + + + L    C+  
Sbjct: 347 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 406

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + D+ + + + +S      D  +YN ++  LC  GRL+ A  +  EM   G  PD+  Y 
Sbjct: 407 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 466

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++  C+   L  A  L   +  S    ++  YNI I      GE+E A  LF N+  +
Sbjct: 467 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQ 526

Query: 500 GVA 502
           G A
Sbjct: 527 GFA 529



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 142/354 (40%), Gaps = 40/354 (11%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    ++Y +++  L      +A   +L+ +       +   Y  II SL + +   +AF
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 140 SVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           ++F+E+    + I P+I   NSL+  L +     +   + +EM +  +  + + F   + 
Sbjct: 273 NLFSEMI--TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             C+   +     ++D + KR   +    V    ++ G C    ++EA KV D +  + C
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKR--GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+  +Y I+   +  +  + +   +L++    G+   T  Y   I GL      C    
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL------CHVGR 442

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           L                            + AI  F+ M+  G++P L T   L   LCK
Sbjct: 443 L----------------------------QHAIALFHEMVASGQIPDLVTYRILLDYLCK 474

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            +   E + + K +  ++   D+  YN+ +  +C +G L  A  +   +  +G 
Sbjct: 475 NHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGF 528


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 11/401 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           L + +A     D  L +  +M  +G+  +     + I  FC   KL    S + ++ K  
Sbjct: 94  LFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLG 153

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E + I  S +    I+G C   RV EA +++D +     KPD I    +     L G  
Sbjct: 154 YEPNTITFSTL----INGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKE 209

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  +++ K  + G  P    Y   +  +    +   A EL   +      +D    + +
Sbjct: 210 AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 338 IGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I  +    S+D  +A   FN M  KG    + T + L    C   + D+  ++ + +   
Sbjct: 270 IDGLCKHGSLD--NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +++V++      G+LREA  + +EM  +G+ PD   Y SL++  C+E+ L  A
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D M + GC  N++T+NILI+ + +   I+  L LF  M  +GV  D  TY +L++G
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 447

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            C+   L  A E+F + V+  V          +  LC  G 
Sbjct: 448 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 209/474 (44%), Gaps = 60/474 (12%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN-AIDSVLKQV----KVNKITLDSSV 121
           A+G       +PN     +++ +++  L L  +++ A++ V + V    K + IT+++ V
Sbjct: 145 AMGKIIKLGYEPN----TITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 200

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCE----DIGPEICNSLLAVLASDGYIDNALKMF 177
               +     GK  +    +   V++ C+      GP     +L V+   G    A+++ 
Sbjct: 201 NGLCL----SGKEAEAMLLIDKMVEYGCQPNAVTYGP-----VLNVMCKSGQTALAMELL 251

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGF 236
            +M  R ++   + + + I   C++  L    ++ +E+   E   I  ++I   ++I GF
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM---EMKGITTNIITYNILIGGF 308

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C   R ++  K+L ++  R+  P+ + + ++ + F   G + E E + K+    G+AP T
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 368

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y   I G   E  + +A ++                                   + M
Sbjct: 369 ITYTSLIDGFCKENHLDKANQM----------------------------------VDLM 394

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + KG  P + T + L    CK N+ D+ +E+++ +S      D  +YN ++   C  G+L
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             A  + QEM  + + P++  Y  L++  C       A ++++++  S    ++  YNI+
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           I       +++ A  LF ++  KGV P   TY  ++ GLC++  L  A  +F K
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 194/449 (43%), Gaps = 41/449 (9%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y  +L  +  S Q      +L++++   I LD+  Y  II  L +  +  
Sbjct: 225 QPN----AVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD 280

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF++FNE++           N L+    + G  D+  K+  +M  R +  + + F V I
Sbjct: 281 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 340

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             F +  KL +   +  E+  R   +   ++    +I GFCK   +++A +++D +  + 
Sbjct: 341 DSFVKEGKLREAEELHKEMIHR--GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P+   + I+   +     + +   + +K    GV   T  Y   I G     ++  AK
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           EL                                  F  M+ +   P + T   L   LC
Sbjct: 459 EL----------------------------------FQEMVSRKVPPNIVTYKILLDGLC 484

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
              +S++ +E+++ +  +    D+  YN+++  +C + ++ +A+ +   +  KG+ P V 
Sbjct: 485 DNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 544

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN ++   C++  L  A+ L+ +M   G + +  TYNILI      G+   +++L   +
Sbjct: 545 TYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              G + DA+T   +++ L  +  L+ +F
Sbjct: 605 KRCGFSVDASTIKMVIDML-SDGRLKKSF 632



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 5/233 (2%)

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
            I    AI  F  MI    +PT+   S L   + K  + D ++ + K +       ++ +
Sbjct: 66  DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 125

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
            ++M++  C   +L  A+  + ++ + G +P+   +++L+   C E  +  A +L D+M 
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +L T N L++     G+   A+ L   M+E G  P+A TY  +L  +C+     
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 245

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
            A E+  K    ++ L     S  +  LC+ G    A  L     ++G+++++
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 125/566 (22%), Positives = 241/566 (42%), Gaps = 60/566 (10%)

Query: 57  NPYLLTHHSLALGFFNWA--SQQPNFTHSPL---------SYHSILKSLSLSRQINAIDS 105
           +P +++++++  GFF     S+  N  H  +         +Y S + +L  +R ++  + 
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283

Query: 106 VLKQVKVNKITLDSSVYRFIIPS---LIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSL 160
           VL+Q+  N    D   Y  +I     L Q K T   F            + P+I  CNS 
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTR-----RGLMPDIFTCNSY 338

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE- 219
           ++ L   G    A + FD M+ +G +   + + V +  +   A  G V+ ML+     E 
Sbjct: 339 MSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGY---AAEGYVVDMLNLFNSMEG 395

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           N ++    +  ++I  + K   ++EA  +  +++ R   PD   Y  V   F  MG + +
Sbjct: 396 NGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLAD 455

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
                 +   +G+ P T  Y   I G  +   + +AKEL   ++S               
Sbjct: 456 AMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI------------ 503

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                 PR   VFFN +I                +LCK  +  E  +++ ++       D
Sbjct: 504 ------PRPNTVFFNSII---------------NSLCKEGRVVEAQDIFDLVIHIGERPD 542

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + ++N ++      G++ +A+GV+  M   G++PDV  Y++L++  CR   +     L+ 
Sbjct: 543 VITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFR 602

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M + G      TY I++      G   GA ++ H M+E G   D +T   +L GLC+  
Sbjct: 603 EMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNN 662

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHV 577
               A  +F K    +V    +I++T + ++ +      A +L   +S+   + ++ ++ 
Sbjct: 663 CDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYG 722

Query: 578 ILLKSLADAREVEMAIEHIKWIQESS 603
           +++ +L     VE A      +++S 
Sbjct: 723 VMITNLLKEGSVEEADNMFSLMEKSG 748



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 174/411 (42%), Gaps = 38/411 (9%)

Query: 156 ICNSLLAVLASDGYIDNALK-MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           + N LL  L      D+A+  +   M   GVE  TI +   +   CE+++  + L +L  
Sbjct: 156 VANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHT 215

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           + K+                                      C P+ ++Y  V   F   
Sbjct: 216 MVKKSGG-----------------------------------CSPNVVSYNTVIHGFFRE 240

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G V +   +  +  + GV P    Y  +I  L   R + +A+ +   ++S  F  D    
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N +I   S +   +     F  M  +G +P + T ++   +LCK  KS E  E +  ++A
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
             +  D+ +Y+V++      G + +   +   M+  G+  D S YN L++A  +  ++  
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  ++ QM   G   +  TY  +I+ FS +G +  A+  F+ M+  G+ PD   Y SL++
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQ 480

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLL 563
           G C   NL  A E+ ++ ++  +    ++    +I SLC+ G  + A  + 
Sbjct: 481 GFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIF 531



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 38/325 (11%)

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV--SGKFTIDDDVLNALI- 338
           V+L +  +LGV P T  Y   +  L  + R   A +L   +V  SG  + +    N +I 
Sbjct: 176 VLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIH 235

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G     +   A   F+ M+++G VP + T S+    LCK    D+   V + + +N +  
Sbjct: 236 GFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEP 295

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +YN M+      G+ +E  G+ +EM R+GL PD+   NS M + C+    + A + +
Sbjct: 296 DKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFF 355

Query: 459 DQMFASGCSGNLKTY-----------------------------------NILISKFSEV 483
           D M A G   +L TY                                   NILI  + + 
Sbjct: 356 DSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKR 415

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G ++ A+ +F  M E+GV PDA TY +++    +   L  A + FN+ +   +     + 
Sbjct: 416 GMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVY 475

Query: 544 STFMISLCRRGHFLVATKLLRGLSS 568
           ++ +   C  G+ + A +L+  + S
Sbjct: 476 NSLIQGFCMHGNLVKAKELISEMMS 500



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 188/438 (42%), Gaps = 12/438 (2%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H P  ++Y  +L   +    +  + ++   ++ N I  D SVY  +I +  +     +A 
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAM 422

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +F +++            +++A  +  G + +A+  F++M   G++  TI +   I  F
Sbjct: 423 LIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF 482

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECK 258
           C +  L +   ++ E+  R     N +V    II+  CK  RV EA  + D  + I E +
Sbjct: 483 CMHGNLVKAKELISEMMSRGIPRPN-TVFFNSIINSLCKEGRVVEAQDIFDLVIHIGE-R 540

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA--- 315
           PD I +  + + + L+G + +   VL     +G+ P    Y   + G     RI +    
Sbjct: 541 PDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLIL 600

Query: 316 -KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +E+    V         +L+ L     ++  +      + MIE G    +ST   +   
Sbjct: 601 FREMLSKGVKPTTITYGIILHGLFNDGRTVGAKK---MCHEMIESGTTMDISTCGIILGG 657

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+ N  DE + ++K L A +   ++   N M+  +    +  EA  +   +   GL P+
Sbjct: 658 LCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPN 717

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            S Y  ++    +E  +  A  ++  M  SGC+ + +  N +I    E GEI  A     
Sbjct: 718 ASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLS 777

Query: 495 NMLEKGVAPDATTYTSLL 512
            +  K ++ +A+T + +L
Sbjct: 778 KVDGKTISLEASTASLML 795



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 36/191 (18%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P      F   ++ G    +   + L K LC   +SD+ V V                  
Sbjct: 135 PTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV------------------ 176

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF--A 463
                           ++  M   G++PD   Y++++++ C +   + A  L   M   +
Sbjct: 177 ----------------LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKS 220

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            GCS N+ +YN +I  F   GE+  A  LFH M+++GV PD  TY+S ++ LC+   +  
Sbjct: 221 GGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDK 280

Query: 524 AFEVFNKSVNH 534
           A  V  + +++
Sbjct: 281 AELVLRQMISN 291



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR- 491
           P V  YN LM+ CCR         L+ +   +G   ++   NIL+         + A+  
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           L H M E GV PD  +Y+++L+ LC+++  Q A ++ +  V
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMV 217


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 221/478 (46%), Gaps = 20/478 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           ++ SL++    QK    F+ V   C+ + P++    + +      G ++ A+K+F +M  
Sbjct: 232 LLTSLVRANEFQKCCEAFDVV---CKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 288

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGK 240
            GV  + + F   I       +  +     +++ +R  E ++I  S++    + G  + K
Sbjct: 289 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSIL----VKGLTRAK 344

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+ +A+ VL E+  +   P+ I Y  + + F   GS+ +   +       G++  ++ Y 
Sbjct: 345 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 404

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEK 359
             I G     +   A+ L + ++S  F ++     ++I  + S +   SA+ F   M+ +
Sbjct: 405 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 464

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P    L+ L   LCK  K  + +E++       +  D  + N ++  LC +G+L EA
Sbjct: 465 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 524

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + + +E+  +G   D   YN+L+  CC +  L  A    D+M   G   +  TY+ILI  
Sbjct: 525 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 584

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
              + ++E A++ + +    G+ PD  TY+ +++G C+    +   E F++ ++ +V   
Sbjct: 585 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN 644

Query: 540 RSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMA 592
             + +  + + CR G   +A +L      +G+S +   S ++  L+K ++    VE A
Sbjct: 645 TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN---SATYTSLIKGMSIISRVEEA 699



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 108/511 (21%), Positives = 200/511 (39%), Gaps = 69/511 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++K L+ +++I     VLK++       +  VY  +I S I+  +  KA  + + 
Sbjct: 331 ITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDL 390

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+L+     +G  DNA ++  EM   G   +   F   I   C +  
Sbjct: 391 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 450

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLI-------------------------------- 232
               L  + E+  R N    G ++  LI                                
Sbjct: 451 FDSALRFVGEMLLR-NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 509

Query: 233 --IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
             +HG C+  +++EAF++  E+  R C  D ++Y  +         + E  + L +  K 
Sbjct: 510 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 569

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    Y   I GL    ++ EA                                  I
Sbjct: 570 GLKPDNYTYSILICGLFNMNKVEEA----------------------------------I 595

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F++     G +P + T S +    CK  +++E  E +  + + +   +   YN ++   
Sbjct: 596 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 655

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C SGRL  A  + ++MK KG+ P+ + Y SL++       +  AK L+++M   G   N+
Sbjct: 656 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 715

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  LI  + ++G++     L   M  K V P+  TYT ++ G  ++ N+  A  + N+
Sbjct: 716 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 775

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATK 561
                ++        F+    ++G  L A K
Sbjct: 776 MREKGIVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score = 38.9 bits (89), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     + Y+ ++++   S +++    + + +K   I+ +S+ Y  +I  +      +
Sbjct: 642 QPN----TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 697

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK---MFDEMSHRGVEFSTIGFG 193
           +A  +F E++   E + P + +   A++   G +   +K   +  EM  + V  + I + 
Sbjct: 698 EAKLLFEEMRM--EGLEPNVFH-YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 754

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           V I  +  +  + +   +L+E+R  E  ++  S+     I+G+ K   V EAFK  DE
Sbjct: 755 VMIGGYARDGNVTEASRLLNEMR--EKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 810


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 191/423 (45%), Gaps = 46/423 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L        A+ + D+M  RG +   + +G  +   C+   +   LS+L   +K
Sbjct: 189 NTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLL---KK 245

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I   V+    II G CK K +++AF + +++  +  +PD   Y  +       G 
Sbjct: 246 MEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGR 305

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L    +  + P    +   I   + E ++ EA++L                  
Sbjct: 306 WSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKL------------------ 347

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                           ++ MI++   P + T S+L    C  ++ DE   +++++ + D 
Sbjct: 348 ----------------YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F ++ +YN ++   C + R+ E   + +EM ++GL  +   YN+L++   +      A+K
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++ +M + G   ++ TY+IL+    + G++E AL +F  + +  + PD  TY  ++EG+C
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511

Query: 517 QETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
           +   ++  +++F     K V  +V++  +++S F    CR+G    A  L R +  D   
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF----CRKGLKEEADALFREMKEDGTL 567

Query: 573 SDS 575
            DS
Sbjct: 568 PDS 570



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 5/365 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG  P        + G    +RI +A  L + +V   +  D    N LI  + 
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLF 196

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+++G  P L T   +   LCKR   D  + + K +       D+ 
Sbjct: 197 LHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 256

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN ++  LC    + +A+ +  +M+ KG+ PDV  YNSL+   C       A +L   M
Sbjct: 257 IYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM 316

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T++ LI  F + G++  A +L+  M+++ + PD  TY+SL+ G C    L
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A  +F   ++ D        +T +   C+        +L R +S    +G++ ++  L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

Query: 580 LKSLADAREVEMAIEHI-KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           ++ L  A + +MA +   K + +  P  +   S  L   L      E  L++   LQ+  
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI-LLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 639 LDSEI 643
           ++ +I
Sbjct: 496 MEPDI 500


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 251/541 (46%), Gaps = 32/541 (5%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPS 128
            F  A +  +F     +  S++++ +      +++ +L ++++ N++ ++ S   FI+  
Sbjct: 63  MFKSAPKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERS---FIVVF 119

Query: 129 LIQGKN--TQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
              GK    +KA  +F+ +  +F C+       NS+L V+ ++G     L+ +D + +  
Sbjct: 120 RAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSF-NSVLNVIINEGLYHRGLEFYDYVVNSN 178

Query: 185 VEFST----IGFGVFIWKFCENAKLGQVLSMLDEVRKR-ENSMINGSVIAVLIIHGFCKG 239
           +  +     + F + I   C   KLG V   ++  R   E   +        ++ G CK 
Sbjct: 179 MNMNISPNGLSFNLVIKALC---KLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKE 235

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           +R++EA  +LDE++   C P  + Y ++ +     G +     ++      G  P    Y
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTY 295

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDD----DVLNALIGSVSSIDPRSAIVFFNF 355
              I GL ++ ++ +A  L E +VS K   +D     ++N L+    ++D    ++    
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLIS--- 352

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E+G        S L   L K  K++E + ++K ++      ++  Y+ ++  LC  G+
Sbjct: 353 MEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGK 412

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             EA  ++  M   G  P+V  Y+SLM+   +  L   A ++W +M  +GCS N   Y++
Sbjct: 413 PNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSV 472

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI     VG ++ A+ ++  ML  G+ PD   Y+S+++GLC   ++ AA +++++ +  +
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQE 532

Query: 536 VMLARSILSTFMI---SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAR 587
              ++  + T+ I    LC +     A  LL     RG   D+   ++ +  L   +D+ 
Sbjct: 533 EPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSC 592

Query: 588 E 588
           E
Sbjct: 593 E 593



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/489 (21%), Positives = 190/489 (38%), Gaps = 64/489 (13%)

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEI 156
           R +   D V+       I+ +   +  +I +L +     +A  VF  + +  C   G   
Sbjct: 166 RGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTY 225

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C +L+  L  +  ID A+ + DEM   G   S + + V I   C+   L +V  ++D + 
Sbjct: 226 C-TLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMF 284

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            +        V    +IHG C   ++++A  +L+ +   +C P+ + Y  +         
Sbjct: 285 LK--GCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR 342

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L    + G     + Y   I GL  E +  EA  L + +       +  V +A
Sbjct: 343 AMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSA 402

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           +I G      P  A    N MI  G +P + T S+L K   K   S+E ++V++ +    
Sbjct: 403 VIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETG 462

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +   Y+V++  LC  GR++EA  V  +M   G+ PD   Y+S+++  C    +  A 
Sbjct: 463 CSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAAL 522

Query: 456 KLWDQMFAS--------------------------------------GCSGNLKTYNILI 477
           KL+ +M                                         GC  ++ T N  +
Sbjct: 523 KLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFL 582

Query: 478 SKFSEVGE---------------------IEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +  SE  +                     + GA ++   ML K +AP  +T+  ++  +C
Sbjct: 583 NTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEIC 642

Query: 517 QETNLQAAF 525
           +   + AA 
Sbjct: 643 KPKKINAAI 651


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/535 (22%), Positives = 229/535 (42%), Gaps = 59/535 (11%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E  L  L  +    P  V  V+    L   + A+ +F W  ++    H P SY+S
Sbjct: 48  WGPSAENALSALNFKPQ--PEFVIGVLRR--LKDVNRAIEYFRWYERRTELPHCPESYNS 103

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF-NEVKFN 148
           +L  ++  R  +A+D +L ++ V       +    ++ S ++    ++ F V  N  KF 
Sbjct: 104 LLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFK 163

Query: 149 CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                P      +L+   ++  + D  L +F +M   G E +   F   I  F +  ++ 
Sbjct: 164 ---FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVD 220

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR- 265
             LS+LDE+  + +S+    V+  + I  F K  +V+ A+K   E+     KPD + Y  
Sbjct: 221 SALSLLDEM--KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278

Query: 266 ---IVAEEFKLMGSV--FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
              ++ +  +L  +V  FE    L+K R++   P T  Y   I+G               
Sbjct: 279 MIGVLCKANRLDEAVEMFEH---LEKNRRV---PCTYAYNTMIMGY-------------- 318

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                             GS    D   A         KG +P++   + +   L K  K
Sbjct: 319 ------------------GSAGKFD--EAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE + V++ +   D   ++ +YN+++  LC +G+L  A+ +   M++ GL P+V   N 
Sbjct: 359 VDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNI 417

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++  C+   L  A  +++QM    C+ +  T+  LI    +VG ++ A +++  ML+  
Sbjct: 418 MVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD 477

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
              ++  YTSL++        +   +++   VN +      +L+T+M  + + G 
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGE 532



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 199/448 (44%), Gaps = 10/448 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + +++    + + ++ N+    +  Y  +I          +A+S+   
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCENA 203
            +           N +L  L   G +D AL++F+EM        ST  + + I   C   
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLST--YNILIDMLCRAG 391

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           KL     + D ++K    +        +++   CK ++++EA  + +++  + C PD I 
Sbjct: 392 KLDCAFELRDSMQKA--GLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEIT 449

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEV 321
           +  + +    +G V +   + +K   L    RTN   Y   I       R  +  ++ + 
Sbjct: 450 FCSLIDGLGKVGRVDDAYKIYEKM--LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507

Query: 322 IVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +V+   + D  +LN  +  +  + +P      F  +  +  VP   + S L   L K   
Sbjct: 508 MVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGF 567

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
           ++E  E++  +       D  +YN+++   C  G++ +AY +++EMK KG +P V  Y S
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++   + D L  A  L+++  +     N+  Y+ LI  F +VG I+ A  +   +++KG
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVF 528
           + P+  T+ SLL+ L +   +  A   F
Sbjct: 688 LTPNVYTWNSLLDALVKAEEINEALVCF 715



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 206/486 (42%), Gaps = 49/486 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++     + + +   S+L++ +          Y  I+  L +     +A  VF E+
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM 369

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   +D  P +   N L+ +L   G +D A ++ D M   G+  +     + + + C++ 
Sbjct: 370 K---KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           KL +  ++ +++  +        +    +I G  K  RV++A+K+ +++   +C+ + I 
Sbjct: 427 KLDEACAIFEQMDYK--VCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIV 484

Query: 264 YRIVAEEF-----KLMGSVFEREVV---------------------------------LK 285
           Y  + + F     K  G    +++V                                 +K
Sbjct: 485 YTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIK 544

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
            +R     P    Y   I GLI      E  EL   +      +D    N +I G     
Sbjct: 545 SRR---FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCG 601

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
               A      M  KG  PT+ T  ++   L K ++ DE   +++   +     ++  Y+
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYS 661

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++      GR+ EAY +++E+ +KGL P+V  +NSL++A  + + +  A   +  M   
Sbjct: 662 SLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEL 721

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            C+ N  TY ILI+   +V +   A   +  M ++G+ P   +YT+++ GL +  N+  A
Sbjct: 722 KCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781

Query: 525 FEVFNK 530
             +F++
Sbjct: 782 GALFDR 787



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 189/438 (43%), Gaps = 7/438 (1%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           ++  L  S++++   ++ +Q+     T D   +  +I  L +      A+ ++ ++  + 
Sbjct: 418 MVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD 477

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                 +  SL+    + G  ++  K++ +M ++           ++    +  +  +  
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGR 537

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
           +M +E++ R    +  +    ++IHG  K     E +++   ++ + C  D  AY IV +
Sbjct: 538 AMFEEIKSRR--FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F   G V +   +L++ +  G  P    Y   I GL    R+ EA  L E   S +  +
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655

Query: 330 DDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           +  + ++LI   G V  ID   A +    +++KG  P + T ++L   L K  + +E + 
Sbjct: 656 NVVIYSSLIDGFGKVGRID--EAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALV 713

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
            ++ +       +  +Y ++++ LC   +  +A+   QEM+++G+ P    Y +++    
Sbjct: 714 CFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLA 773

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   +  A  L+D+  A+G   +   YN +I   S       A  LF     +G+     
Sbjct: 774 KAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNK 833

Query: 507 TYTSLLEGLCQETNLQAA 524
           T   LL+ L +   L+ A
Sbjct: 834 TCVVLLDTLHKNDCLEQA 851



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+++T   +  +  K NK  E  +V + +    +     +Y  ++            
Sbjct: 128 GFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + Q+M+  G +P V  + +L+    +E  +  A  L D+M +S    ++  YN+ I  
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +VG+++ A + FH +   G+ PD  TYTS++  LC+   L  A E+F     +  +  
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +T ++     G F  A  LL
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLL 331



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 144/350 (41%), Gaps = 42/350 (12%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           L+  L   G+ +   ++F  M  +G    T  + + I  FC+  K+ +   +L+E++ + 
Sbjct: 558 LIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG 617

Query: 219 -ENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E +++  GSVI      G  K  R++EA+ + +E + +  + + + Y  + + F  +G 
Sbjct: 618 FEPTVVTYGSVI-----DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E  ++L++  + G+ P    +   +  L+      +A+E+ E                
Sbjct: 673 IDEAYLILEELMQKGLTPNVYTWNSLLDALV------KAEEINE---------------- 710

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       A+V F  M E    P   T   L   LCK  K ++    ++ +     
Sbjct: 711 ------------ALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
                SY  M+S L  +G + EA  +    K  G  PD + YN+++E     +    A  
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFS 818

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           L+++    G   + KT  +L+    +   +E A  +   + E G A  A 
Sbjct: 819 LFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAA 868



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 8/267 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     SY  ++  L  +   N    +   +K     LD+  Y  +I    +     KA+
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +  E+K    +       S++  LA    +D A  +F+E   + +E + + +   I  F
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 200 CENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
            +  ++ +   +L+E+ ++    N     S++  L+     K + + EA      ++  +
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALV-----KAEEINEALVCFQSMKELK 722

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P+ + Y I+      +    +  V  ++ +K G+ P T  Y   I GL     I EA 
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSS 343
            L +   +     D    NA+I  +S+
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSN 809


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 183/400 (45%), Gaps = 7/400 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     D  + + ++M   G+  +   + + I  FC  +++   L++L ++ K
Sbjct: 89  NKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMK 148

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S++  S +    ++G+C GKR+ +A  ++D++     +PD I +  +     L  
Sbjct: 149 LGYEPSIVTLSSL----LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 204

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL     I  A  L   + + K   +  + +
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYS 264

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I S+        A+  F  M  KG  P + T S+L   LC   +  +   +   +   
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ ++N ++      G+L EA  +  EM ++ +DPD+  Y+SL+   C  D L  A
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K +++ M +  C  N+ TYN LI+ F +   I+  + LF  M ++G+  +  TYT+L+ G
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             Q  +   A  VF + V+  V       +T +  LC+ G
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 169/372 (45%), Gaps = 29/372 (7%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVL 231
           A+ + D M  RG + + + +GV +   C+   +    ++L+   K E + I  +V I   
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN---KMEAAKIEANVVIYST 265

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV----------AEEFKLMGSVFERE 281
           +I   CK +  ++A  +  E+  +  +P+ I Y  +          ++  +L+  + ER+
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIG 339
           +           P    +   I   + E ++ EA++L + ++  K +ID D+   ++LI 
Sbjct: 326 I----------NPNVVTFNALIDAFVKEGKLVEAEKLYDEMI--KRSIDPDIFTYSSLIN 373

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                D    A   F  MI K   P + T + L    CK  + DE VE+++ +S      
Sbjct: 374 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +  +Y  ++     +     A  V ++M   G+ P++  YN+L++  C+   L  A  ++
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           + +  S     + TYNI+I    + G++E    LF ++  KGV PD   Y +++ G C++
Sbjct: 494 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553

Query: 519 TNLQAAFEVFNK 530
              + A  +F K
Sbjct: 554 GLKEEADALFRK 565



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 153/346 (44%), Gaps = 5/346 (1%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G ID A  + ++M    +E + + +   I   C+       L++  E+   EN  +
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM---ENKGV 291

Query: 224 NGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
             +VI    +I   C  +R  +A ++L ++  R+  P+ + +  + + F   G + E E 
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           +  +  K  + P    Y   I G  +  R+ EAK + E+++S     +    N LI G  
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +      +  F  M ++G V    T + L     +    D    V+K + ++    ++ 
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  LC +G+L +A  V + ++R  ++P +  YN ++E  C+   +     L+  +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              G   ++  YN +IS F   G  E A  LF  M E G  PD+ T
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 156/346 (45%), Gaps = 5/346 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++  L +  +   AF++ N+++    +    I ++++  L    + D+AL +F EM 
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGK 240
           ++GV  + I +   I   C   +      +L ++ +R+   IN +V+    +I  F K  
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK---INPNVVTFNALIDAFVKEG 344

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++ EA K+ DE+  R   PD   Y  +   F +   + E + + +        P    Y 
Sbjct: 345 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 404

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I G    +RI E  EL   +       +      LI G   + D  +A + F  M+  
Sbjct: 405 TLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 464

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P + T + L   LCK  K ++ + V++ L  +     + +YN+M+  +C +G++ + 
Sbjct: 465 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 524

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           + +   +  KG+ PDV  YN+++   CR+ L   A  L+ +M   G
Sbjct: 525 WDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 3/313 (0%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L K  KLG  P        + G    +RI +A  L + +V   +  D      LI  + 
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+++G  P L T   +   LCKR   D    +   + A     ++ 
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVV 261

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y+ ++  LC      +A  +  EM+ KG+ P+V  Y+SL+   C  +    A +L   M
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T+N LI  F + G++  A +L+  M+++ + PD  TY+SL+ G C    L
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A  +F   ++ D        +T +   C+        +L R +S    +G++ ++  L
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441

Query: 580 LKSLADAREVEMA 592
           +     AR+ + A
Sbjct: 442 IHGFFQARDCDNA 454



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 101/224 (45%)

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           D    L   + S+    AI  F  M++   +P++   + L   + K  K D ++ + + +
Sbjct: 52  DYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  ++ +YN++++  C   ++  A  ++ +M + G +P +   +SL+   C    +
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  L DQM   G   +  T+  LI       +   A+ L   M+++G  P+  TY  +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           + GLC+  ++  AF + NK     +     I ST + SLC+  H
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 275


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 212/474 (44%), Gaps = 19/474 (4%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  ++ S  +G   Q+   + +E++           N L+  L+  G  + A  +  EM
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G++ S   +   I+ +     L + LS+ +E+  +  S    +  +   I+G CK  
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNS--FIYGLCKLG 353

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+ +A + L ++      PD ++Y  +   +  +G++ +  ++  + R + + P    Y 
Sbjct: 354 RMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 301 EFILGLIVERRICEAKELG-EVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFM 356
             + GL  +  +  A++L  E+I  G   I  D++   I   GS        A  FF+ M
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEG---IAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 357 IEKG-RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           + +G  + + +  + +   L K   +     + + + A  +  D+  YNV+V  LC  G 
Sbjct: 471 LHEGLELDSYAYATRIVGEL-KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  ++Q+M   G+ PD   Y S++ A      LR  ++++ +M + G + ++ TY +
Sbjct: 530 LEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTV 589

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI   +  G +E A   F  M EKG+ P+  TY SL+ GLC+   +  A+  F + V   
Sbjct: 590 LIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKG 649

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
           +   +   +  +   C  G++  A  L      RG+  D   S +H  LLK L 
Sbjct: 650 IFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD---SCTHSALLKQLG 700



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 203/478 (42%), Gaps = 44/478 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L S     ++     +L +++      +   Y  +I  L +    ++A  +  E
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N L+    + G +  AL + +EM  +G   +   +  FI+  C+  +
Sbjct: 295 MLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +   +  L ++    N+++   V    +I+G+C+   + +AF + DELR     P  + Y
Sbjct: 355 MSDAMQQLSDMLA--NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTY 412

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEV 321
             + +     G   E EV  + K ++   G+AP    Y   + G      +  A+E  + 
Sbjct: 413 NTLLDGLCRQG---ELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 322 IVSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++     +D       ++G +   D   A      M+ KG  P L   + +   LCK   
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 381 SDELVEVYKVLSAN----DYFT-------------------------------DMESYNV 405
            +E  E+ + + ++    DY T                                + +Y V
Sbjct: 530 LEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTV 589

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++      GRL  A+    EM+ KG+ P+V  YNSL+   C+   +  A   + +M   G
Sbjct: 590 LIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKG 649

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
              N  +Y ILI++   +G  + AL L+  ML++GV PD+ T+++LL+ L ++  LQA
Sbjct: 650 IFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQA 707



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 103/214 (48%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  +  M E G  PT+ T + L  + CK  K  + +++   +       +  +YNV+++
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G   +A G+I EM + GL      YN L+     + +L  A  L ++M   G S 
Sbjct: 278 GLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASP 337

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TYN  I    ++G +  A++   +ML   + PD  +Y +L+ G C+  NL  AF +F
Sbjct: 338 TVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLF 397

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           ++  +  +       +T +  LCR+G   VA +L
Sbjct: 398 DELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ MI+    P +   + + + L  ++   + VEVY+ +        + +YN ++   C 
Sbjct: 187 FDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCK 246

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G++++   ++ EM+R+G  P+   YN L+    ++     AK L  +M  +G   +  T
Sbjct: 247 GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  +   G +  AL L   M+ KG +P   TY S + GLC+   +  A +  +  +
Sbjct: 307 YNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDML 366

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++++      +T +   CR G+ + A  L   L S
Sbjct: 367 ANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRS 402



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K++  ++ + V+  +  +    D+++ N ++  L     + +A  V + M   G+ P + 
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIV 235

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+L+++ C+   ++    L  +M   GC+ N  TYN+LI+  S+ GE E A  L   M
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L+ G+   A TY  L+ G   +  L  A  +  + V        +  ++F+  LC+ G  
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRM 355

Query: 557 LVATKLL 563
             A + L
Sbjct: 356 SDAMQQL 362



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 176/443 (39%), Gaps = 65/443 (14%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLS--PSLVARVINPYLLTHHSL-----ALGFFNWASQQ-- 77
           A  + PL+    ++  L ++LS    +V +  +P + T++S       LG  + A QQ  
Sbjct: 304 AYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLS 363

Query: 78  ----PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
                N     +SY++++      R  N + + L   ++  I L  ++  +   +L+ G 
Sbjct: 364 DMLANNLLPDVVSYNTLI--YGYCRLGNLMKAFLLFDELRSIYLFPTIVTY--NTLLDGL 419

Query: 134 NTQKAFSVFNEVKFNC--EDIGPEICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFST 189
             Q    V  ++K     E I P+I    + V  S   G +  A + FDEM H G+E  +
Sbjct: 420 CRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS 479

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
             +   I    +     +  S+ +E+  +        +I  +++ G CK   +EEA ++L
Sbjct: 480 YAYATRIVGELKLGDTSRAFSLQEEMLAK--GFPPDLIIYNVVVDGLCKLGNLEEASELL 537

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI-- 307
            ++      PD++ Y  +       G + +   +  +    G+ P    Y   I G    
Sbjct: 538 QKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGK 597

Query: 308 --VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             +ER      E+ E  +       + ++N L   V  +D   A  FF  M+EKG  P  
Sbjct: 598 GRLERAFIYFSEMQEKGILPNVITYNSLINGLC-KVRRMD--QAYNFFAEMVEKGIFP-- 652

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                                       N Y     SY ++++  C  G  +EA  + ++
Sbjct: 653 ----------------------------NKY-----SYTILINENCNMGNWQEALSLYKQ 679

Query: 426 MKRKGLDPDVSFYNSLMEACCRE 448
           M  +G+ PD   +++L++   ++
Sbjct: 680 MLDRGVQPDSCTHSALLKQLGKD 702


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 175/374 (46%), Gaps = 3/374 (0%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
            L  +A        + + ++M   GV  +     + I   C  + +   +S+L ++ K  
Sbjct: 92  FLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKL- 150

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   SV    +I+G C   R++EA ++ +E+  R+  P+ + + I+ +     G V E
Sbjct: 151 -GIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSE 209

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              V +   + GV P    Y   + G  +   + +A ++ E++V           + LI 
Sbjct: 210 ARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILIN 269

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   S     A      M EK  +P   T + L + LC  +   E  E++K + ++    
Sbjct: 270 GYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLP 329

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +Y++++  LC  G L EA  ++  M+ + L+PD+  YN L++       L  AK+L+
Sbjct: 330 NLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELF 389

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            ++FA+G   +++TYNI+I    + G  + A +LF  M + G  PD+ +Y  +++G  Q 
Sbjct: 390 SKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQN 449

Query: 519 TNLQAAFEVFNKSV 532
            +   A ++ ++ V
Sbjct: 450 QDPSTAIQLIDEMV 463



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 15/323 (4%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV-------SGKFTIDDDVLN 335
           VL K  KLG+ P +  +   I GL  E RI EA EL   +        +  FTI  DVL 
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVL- 201

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
              G VS      A   F  M EKG  P + T + L    C R + ++  +V++++    
Sbjct: 202 CKKGMVSE-----ARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKG 256

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + SY+++++  C S R+ EA  ++ +M  K L P+   YN+LM+  C    L  A+
Sbjct: 257 CAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQ 316

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+ +M +SG   NL+TY+IL+    + G +E AL+L  +M E+ + PD   Y  L++G+
Sbjct: 317 ELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGM 376

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHS 573
                L+ A E+F+K   + +  +    +  +  L + G    A KL R +  D  L  S
Sbjct: 377 FIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDS 436

Query: 574 DSHVILLKSLADAREVEMAIEHI 596
            S+ ++++     ++   AI+ I
Sbjct: 437 CSYNVIIQGFLQNQDPSTAIQLI 459



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 3/268 (1%)

Query: 330 DDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +D  LN LI S+  +     A+   + M + G  P   T + L   LC   +  E VE++
Sbjct: 120 NDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELF 179

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             ++  D   +  ++ ++V  LC  G + EA  V + M  KG++P++  YN+LM   C  
Sbjct: 180 NEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLR 239

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A K+++ M   GC+ ++ +Y+ILI+ + +   I+ A  L   M EK + P+  TY
Sbjct: 240 LEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTY 299

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +L++GLC  ++L  A E+F K  +  ++      S  +  LC+ GH   A KLL  +  
Sbjct: 300 NTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQE 359

Query: 569 DLGHSDS--HVILLKSLADAREVEMAIE 594
                D   + IL++ +  A ++E+A E
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKE 387



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 15/369 (4%)

Query: 82  HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           H+  + + ++ SL     I+   SVL ++    I  DS  +  +I  L      ++A  +
Sbjct: 119 HNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVEL 178

Query: 142 FNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           FNE+     D  P       L+ VL   G +  A  +F+ M+ +GVE +   +   +  +
Sbjct: 179 FNEMA--GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGY 236

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIR 255
           C        L M D  +  E  +  G   +V    ++I+G+CK +R++EA  +L ++  +
Sbjct: 237 CLR------LEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEK 290

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
           E  P+ + Y  + +      S+ E + + KK    G+ P    Y   + GL     + EA
Sbjct: 291 ELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEA 350

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +L   +   K   D  + N LI G   +     A   F+ +   G  P++ T + + K 
Sbjct: 351 LKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKG 410

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L K   SDE  ++++ +  + +  D  SYNV++     +     A  +I EM  +    D
Sbjct: 411 LLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSAD 470

Query: 435 VSFYNSLME 443
            S +  L++
Sbjct: 471 SSTFKMLLD 479


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 218/481 (45%), Gaps = 23/481 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L++ +++  L    ++    ++L ++  N +  D   Y   +  + +  +T  A ++  +
Sbjct: 183 LTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRK 242

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++     I P   I ++++  L  DG   ++  +F EM  +G+  + + +   I  FC +
Sbjct: 243 ME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +      +L E+ +R+   I+ +V+    +I+ F K  +  EA ++ DE+  R   P+ 
Sbjct: 302 GRWSAAQRLLQEMLERK---ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  + + F     +   E +       G +P    +   I G    +RI +  EL   
Sbjct: 359 ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE 418

Query: 322 IVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +       +    N LI     + D  +A+     MI  G  P + T + L   LC   K
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478

Query: 381 SDELVEVYKV-------LSANDYFTDME----SYNVMVSFLCTSGRLREAYGVIQEMKRK 429
             + +E++K        L A+  F  +E    +YN+++  L   G+  EA  + +EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ PD   Y+S+++  C++  L  A +++  M +   S N+ T+N LI+ + + G ++  
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILST 545
           L LF  M  +G+  DA  Y +L+ G  +  N+  A ++F +     V  D +  R++L+ 
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 546 F 546
           F
Sbjct: 659 F 659



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 194/452 (42%), Gaps = 51/452 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  +      D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K
Sbjct: 85  NKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTK 144

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +    V    ++HG C   RV EA  +  ++    C+PD + +  +       G V
Sbjct: 145 L--GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRV 198

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L +  + G+ P    Y  F+ G+          ++G+ + +         LN L
Sbjct: 199 VEAVALLDRMVENGLQPDQITYGTFVDGMC---------KMGDTVSA---------LNLL 240

Query: 338 --IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
             +  +S I P   +V ++ +I+                LCK  +  +   ++  +    
Sbjct: 241 RKMEEISHIKPN--VVIYSAIID---------------GLCKDGRHSDSHNLFIEMQDKG 283

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F ++ +YN M+   C SGR   A  ++QEM  + + P+V  YN+L+ A  +E     A 
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+D+M   G   N  TYN +I  F +   ++ A  +F+ M  KG +PD  T+T+L++G 
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDL 570
           C    +    E+ ++     ++      +T +   C  G    A  L +     G+  D+
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQES 602
              ++   LL  L D  +++ A+E  K +Q+S
Sbjct: 464 VTCNT---LLDGLCDNGKLKDALEMFKAMQKS 492



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/554 (20%), Positives = 230/554 (41%), Gaps = 64/554 (11%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLAS 166
           K+ K+ L   V  F  ++  L       +A  +F+++   C    P++    +L+  L  
Sbjct: 141 KLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CR---PDVLTFTTLMNGLCR 194

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE------- 219
           +G +  A+ + D M   G++   I +G F+   C   K+G  +S L+ +RK E       
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC---KMGDTVSALNLLRKMEEISHIKP 251

Query: 220 NSMINGSVIAVL------------------------------IIHGFCKGKRVEEAFKVL 249
           N +I  ++I  L                              +I GFC   R   A ++L
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            E+  R+  P+ + Y  +   F   G  FE   +  +    G+ P T  Y   I G   +
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 371

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            R+  A+++  ++ +   + D      LI G   +      +   + M  +G V    T 
Sbjct: 372 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTY 431

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L    C     +  +++ + + ++    D+ + N ++  LC +G+L++A  + + M++
Sbjct: 432 NTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 491

Query: 429 -----------KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
                       G++PDV  YN L+     E     A++L+++M   G   +  TY+ +I
Sbjct: 492 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 551

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
               +   ++ A ++F +M  K  +P+  T+ +L+ G C+   +    E+F +     ++
Sbjct: 552 DGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIV 611

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEH 595
               I  T +    + G+   A  + + + S   + D+  I  +L       E+E A+  
Sbjct: 612 ADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAM 671

Query: 596 IKWIQESSPTMLQE 609
           ++ +Q S    L++
Sbjct: 672 LEDLQMSVGYQLED 685


>gi|115470867|ref|NP_001059032.1| Os07g0179000 [Oryza sativa Japonica Group]
 gi|34393469|dbj|BAC83029.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|50509181|dbj|BAD30332.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610568|dbj|BAF20946.1| Os07g0179000 [Oryza sativa Japonica Group]
 gi|125599319|gb|EAZ38895.1| hypothetical protein OsJ_23314 [Oryza sativa Japonica Group]
 gi|215712269|dbj|BAG94396.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767408|dbj|BAG99636.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 727

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 232/512 (45%), Gaps = 31/512 (6%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           ++W P +   L +L     ++P LVA V++        LAL FF WA +Q  F H   ++
Sbjct: 106 QRWGPPVVAELTKL---RRVAPELVAEVLSARPPPPPPLALPFFLWAGRQKGFRHCFPAF 162

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H++   LS +    A D +   ++ +   +  S    ++      +   +A       +F
Sbjct: 163 HALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARRPLRALHALR--RF 220

Query: 148 NCE-DIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
             E  + PE+  CN +L  LA+ G++D+ LK+FDEMSH  V    + F + +        
Sbjct: 221 RHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGM 280

Query: 205 LGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++L M+  +R    R +  +  +++  ++  G  +G       +V +E+R     PD 
Sbjct: 281 TDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEG-----CIRVWEEIRRDHVDPDT 335

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           +AY  +       G V + E +  + R+ G+      Y   I G +   R+ +   + + 
Sbjct: 336 MAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKE 395

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +V   +  D  + N LIG +  I+    A   F  ++++  +P+  T+S L   L +   
Sbjct: 396 MVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSETVSPL---LARYAD 452

Query: 381 SDELVEVYKVLSANDYFTDME--SYNVMVSFL----CTSGRLREAYGVIQEMKRKGLDPD 434
             E+V+ + ++   D   ++      ++V FL    C SG   +A  V    +R+G    
Sbjct: 453 KGEMVKFFGLV---DKLVELSLPIVEILVDFLKLFACKSGNELKAVEVFNAFRRRG-HYS 508

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLF 493
           V  YN L+E   +    + A  L+++M +S  C  +  TY+ +I  F + G IE A   +
Sbjct: 509 VGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMIPCFVDEGNIEEACSCY 568

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           + M++    P  + Y +L++GLC++  + AA 
Sbjct: 569 NLMMKAVWIPSISAYCALVKGLCKKGEINAAI 600



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 110/242 (45%), Gaps = 3/242 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P +   + L K + +    +  + V++ +  +    D  +Y  M++ LC +G + +A  +
Sbjct: 298 PDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEEL 357

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             EM+RKGL  D   Y SL++       +    ++  +M  +G   +L  YN LI    E
Sbjct: 358 FGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCE 417

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +   + A ++F  ++++ + P + T + LL     +  +   F + +K V   + +   +
Sbjct: 418 IEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEIL 477

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQ 600
           +    +  C+ G+ L A ++        GH    +  IL+++L   +E + A+   + +Q
Sbjct: 478 VDFLKLFACKSGNELKAVEVFNAFRRR-GHYSVGIYNILIENLLKIKERKKALVLFEEMQ 536

Query: 601 ES 602
            S
Sbjct: 537 SS 538



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ + N ++  L  +G + +   +  EM    + P    +  ++ A  R  +     ++ 
Sbjct: 229 EVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMI 288

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M A  C  ++  Y  L+      G +EG +R++  +    V PD   YT+++ GLC  
Sbjct: 289 GRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNA 348

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLG 571
             ++ A E+F +     +++ R + ++ +      G      ++L+     G  +DLG
Sbjct: 349 GMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLG 406



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 63/150 (42%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ +MV  L  +G   +   +I  M+ +   PDV  Y +L++   R   +    ++W+++
Sbjct: 267 TFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEI 326

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                  +   Y  +I+     G +E A  LF  M  KG+  D   Y SL++G      +
Sbjct: 327 RRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRV 386

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLC 551
                V  + V+        I +T +  LC
Sbjct: 387 SDGCRVLKEMVDAGYRADLGIYNTLIGGLC 416



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           DS  Y  +IP  +   N ++A S +N +             +L+  L   G I+ A+ + 
Sbjct: 544 DSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLV 603

Query: 178 DE----MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
            +    + +  +EF    + + I + C++    +V+ ++DE+ +   S+    +I   II
Sbjct: 604 KDCLGNVENGPMEFK---YTLTILEACQSKSPEKVIKVVDEMIELGYSI--EEIIYSAII 658

Query: 234 HGFCKGKRVEEAFKVLDELRIRE--CKPDFIAY 264
           +GFCK     EA KVL  +R R    + ++I Y
Sbjct: 659 YGFCKYASSTEARKVLSTMRDRNIISEANYIVY 691


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 198/437 (45%), Gaps = 21/437 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L+  G ++ A ++  EM   G+E S   +   I  +CE  +L       DE  +
Sbjct: 229 NVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQL-------DEASR 281

Query: 218 RENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               M++   +  L     I++G CK  RV +A K+LD +  +   PD ++Y  +   + 
Sbjct: 282 LGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYT 341

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            +G++ E  ++  + R  G+ P    Y   I GL     +  A  L + ++  K   D D
Sbjct: 342 RLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMI--KHGPDPD 399

Query: 333 VLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVY 388
           V    I   G     +   A   F+ M+ +G  P   + ++ +   L K     +   + 
Sbjct: 400 VFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQ 458

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           + + A  +  D+ +YNV +  L   G L+EA  ++++M   GL PD   Y S++ A    
Sbjct: 459 EEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMA 518

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             LR A+ ++ +M + G   ++ TY +LI  ++  G ++ A+  F  M EKGV P+  TY
Sbjct: 519 GHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITY 578

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +L+ GLC+   +  A++ F +     +   +   +  +   C  GH+  A +L + +  
Sbjct: 579 NALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD 638

Query: 569 DLGHSDS--HVILLKSL 583
                DS  H  LLK L
Sbjct: 639 REIQPDSCTHSALLKHL 655



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 126/531 (23%), Positives = 227/531 (42%), Gaps = 94/531 (17%)

Query: 49  PSLVARVINPYLLTHH-SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVL 107
           P L+ RV+N   + H  ++AL FF WA +Q  F  S L+Y  IL  L+ +  + +   V+
Sbjct: 47  PQLLVRVLNT--VRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVM 104

Query: 108 -KQVKVNKITLDSSVYRFIIPSLIQGKNT--QKAFSVFNEVKFNCEDIGPEI--CNSLLA 162
            K V V        V    +   I  K +  +K   VF   K   + + P++  CN +L 
Sbjct: 105 EKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVF--YKMVSKGMLPDLKNCNRVLR 162

Query: 163 VLAS-DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           +L   D  ID A ++++ M   G+  + + +                 +MLD        
Sbjct: 163 LLRDRDSSIDVAREVYNVMVECGIRPTVVTYN----------------TMLDS------- 199

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
                         FCK  +V+EA ++L +++   C P+ + Y ++       G + + +
Sbjct: 200 --------------FCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAK 245

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            ++++  +LG+      Y   I G   + ++ EA  LGE                     
Sbjct: 246 ELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEE-------------------- 285

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                         M+ +G VPTL T + +   LCK  +  +  ++  V+   +   D+ 
Sbjct: 286 --------------MLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLV 331

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYN ++      G + EA+ +  E++ +GL P V  YN+L++  CR   L  A +L D+M
Sbjct: 332 SYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEM 391

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   ++ T+ IL+  F ++G +  A  LF  ML +G+ PD   Y + + G  +  + 
Sbjct: 392 IKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDP 451

Query: 522 QAAFEVFNKSVNHDVMLARSI------LSTFMISLCRRGHFLVATKLLRGL 566
             AF +       + MLAR         + F+  L + G+   A++L++ +
Sbjct: 452 SKAFGM------QEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKM 496



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 154/364 (42%), Gaps = 42/364 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+      G I  A  +F E+  RG+  S + +   I   C    L   + + DE+ K
Sbjct: 334 NTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK 393

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY--RIVAEEFKLMG 275
                        +++ GFCK   +  A ++ DE+  R  +PD  AY  RIV E  KL G
Sbjct: 394 HGPD--PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGE-LKL-G 449

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +   + ++    G  P    Y  FI GL     + EA EL + ++      D     
Sbjct: 450 DPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYT 509

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ++I   + +   R A   F  M+ KG  P++ T + L  +   R +    +  +  +   
Sbjct: 510 SIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEK 569

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN +++ LC   ++ +AY    EM+ KG+ P                     
Sbjct: 570 GVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISP--------------------- 608

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
                         N  TY ILI++   +G  + ALRL+ +ML++ + PD+ T+++LL+ 
Sbjct: 609 --------------NKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKH 654

Query: 515 LCQE 518
           L ++
Sbjct: 655 LNKD 658


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 178/409 (43%), Gaps = 6/409 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMF-DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           CN LL  L        A ++F DE+  +  + + I +   I  FC+   + +   +L E+
Sbjct: 72  CNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEM 131

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++R +S     V    I+   C    +  A +   E    EC PD + + I+        
Sbjct: 132 KERGHS--PDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKAN 187

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E   ++++  + G+ P    Y   I GL    R+ EA++L E +V  K   +    N
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYN 247

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   +     A      MI+ G  P + T ++L    C+++K D+  EV  ++   
Sbjct: 248 TLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG 307

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YNV++S LC +GR  EA  ++ EM  +G+ PD+  YNSL+   CR   +  A
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQA 367

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ + M   G   +  +Y  L     +    + A  L  NM + G  P+  T+ SL+EG
Sbjct: 368 FQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEG 427

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           LC    L  A  +           A S     +  LC+ G    A ++L
Sbjct: 428 LCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVL 476


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/501 (22%), Positives = 214/501 (42%), Gaps = 6/501 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  FN      N T     ++ IL SL          S  +Q+++  I  +   +  +I
Sbjct: 36  AVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILI 95

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
                      AFS+  ++            N+LL  L  +G +  AL   D +  +   
Sbjct: 96  NCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFH 155

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI--NGSVIAVLIIHGFCKGKRVEE 244
              + +G  I   C   K G+  + L  +RK E  ++     ++   II  FCK K V +
Sbjct: 156 LDQVSYGTLINGLC---KSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A+ +  E+ +++  P+ + +  +   F ++G + E   +L +     V P    +   I 
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILID 272

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL  E  + +A  +  V++      +     +L+ G     +   A   FN +  +G  P
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTP 332

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + + S +   LCK    DE V+++K +   +   +  +Y+ ++  LC SGR+ + + +I
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLI 392

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            E+  +G   ++  YNSL+   C+   +  A  L  +M   G   ++ TY  L+    + 
Sbjct: 393 DEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKN 452

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G ++ A R++ ++L KG   +   YT ++ GLC+E     A  + ++  ++  M      
Sbjct: 453 GRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTY 512

Query: 544 STFMISLCRRGHFLVATKLLR 564
            T + +L +      A KLLR
Sbjct: 513 ETLISALFKNNKNGKAVKLLR 533



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 226/515 (43%), Gaps = 54/515 (10%)

Query: 17  IISASNRTRPARKWTPLLEQ--TLHQLGLRDSLSPSLVARVINPYLLT--------HHSL 66
           I+  +N T P  ++  +L     ++   +  S S  +  + I P + T         H  
Sbjct: 43  ILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLC 102

Query: 67  ALGF-FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
            L F F+  ++     + P  ++ +++L+ L L+ ++    +    V   +  LD   Y 
Sbjct: 103 QLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYG 162

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMS 181
            +I  L +   T+ A  +  +++     + P++    +++     D  + +A  ++ EM 
Sbjct: 163 TLINGLCKSGETRAALQLLRKIE-GLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMI 221

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGK 240
            + +  + + F   I+ FC   +L + + +L+E+       +N +V    ++I G CK  
Sbjct: 222 VKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNN---VNPNVYTFNILIDGLCKEG 278

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            V++A  VL  +  +  +P+ + Y  + + + L+  V + + V       GV P  + Y 
Sbjct: 279 EVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYS 338

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             I GL      C+ K + E                            A+  F  M  K 
Sbjct: 339 VMINGL------CKNKMVDE----------------------------AVKLFKEMHLKN 364

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P   T S+L   LCK  +  ++ ++   ++      ++ +YN +++ LC + ++ +A 
Sbjct: 365 MTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAI 424

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ +MK +G+ PD+S Y +L++  C+   L+ A++++  +   G   N++ Y ++I+  
Sbjct: 425 ALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGL 484

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            + G  + AL L   M + G  PDA TY +L+  L
Sbjct: 485 CKEGFFDEALSLLSQMEDNGCMPDAVTYETLISAL 519



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 192/451 (42%), Gaps = 50/451 (11%)

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           +PS I   N   A S FN +  +  +  P I   N +L+ L    +   A+    +M  +
Sbjct: 26  LPSFID--NLDDAVSSFNHI-LHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELK 82

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G++     F + I  F    +L    SM+ ++ K        +V    ++ G C   +V+
Sbjct: 83  GIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKL--GYQPDTVTVNTLLRGLCLNGKVK 140

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA    D +  +    D ++Y  +       G   E    L+  RK             I
Sbjct: 141 EALNFHDHVIRKRFHLDQVSYGTLINGLCKSG---ETRAALQLLRK-------------I 184

Query: 304 LGLIVER-RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
            GL++ R  +     + +     K  ID                  A   ++ MI K   
Sbjct: 185 EGLLLVRPDVIMYTAIIDSFCKDKLVID------------------AYDLYSEMIVKKIY 226

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T ++L    C   +  E V +   +S N+   ++ ++N+++  LC  G +++A  V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +  M ++G++P+V  Y SLM+       +  AK +++ +   G + N+ +Y+++I+   +
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVML 538
              ++ A++LF  M  K + P+  TY+SL++GLC+   +   +    E+ N+    +++ 
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIIT 406

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             S+L+     LC+      A  LL  +  +
Sbjct: 407 YNSLLN----GLCKNHQVDKAIALLTKMKDE 433



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 91/199 (45%), Gaps = 7/199 (3%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +M ++N++++      +L  A+ ++ ++ + G  PD    N+L+   C    ++ A    
Sbjct: 87  EMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFH 146

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG---VAPDATTYTSLLEGL 515
           D +       +  +Y  LI+   + GE   AL+L   +  +G   V PD   YT++++  
Sbjct: 147 DHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSF 204

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C++  +  A++++++ +   +       ++ +   C  G    A  LL  +S +  + + 
Sbjct: 205 CKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNV 264

Query: 576 HV--ILLKSLADAREVEMA 592
           +   IL+  L    EV+ A
Sbjct: 265 YTFNILIDGLCKEGEVKKA 283



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 62/135 (45%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+S+L  L  + Q++   ++L ++K   I  D S Y  ++  L +    + A  ++ +
Sbjct: 405 ITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQD 464

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +   +   ++  L  +G+ D AL +  +M   G     + +   I    +N K
Sbjct: 465 LLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNK 524

Query: 205 LGQVLSMLDEVRKRE 219
            G+ + +L E+  RE
Sbjct: 525 NGKAVKLLREMIARE 539


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 197/472 (41%), Gaps = 73/472 (15%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           +SPSLV   +   L    +LAL FF WA +Q  F +S  SYH++++SL   +Q N I ++
Sbjct: 3   VSPSLVFEALKK-LSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNL 61

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +  +K  K  L+   +  I     + +  ++A   F +++     I     N LL  L  
Sbjct: 62  VTDMK-QKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCK 120

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              ++ A  +FD+M+ RG       + + +  + +   L +++ + +E+  ++       
Sbjct: 121 SRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEM--KDEGFEPDV 178

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   ++I+  CK +R ++A ++  E+  + CKP                           
Sbjct: 179 VTYGILINAHCKSRRYDDAIELFHEMEAKNCKP--------------------------- 211

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
                 +P    Y   I GL  E+R+ EA E  E+  +  F  +    NA++G+      
Sbjct: 212 ------SPHI--YCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGA------ 257

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                                        C   + D++      +          +Y+++
Sbjct: 258 ----------------------------YCWSERMDDVQRTIDEMRKGGVGPSARTYDII 289

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  L  +G+ + AY V Q+M  +G  P VS Y  ++   C ED +  A K+WDQM A G 
Sbjct: 290 LHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGI 349

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
              +  ++ LI+      +++ A   F  ML+ G+ P A  +++L + L  E
Sbjct: 350 LPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDE 401



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 167/406 (41%), Gaps = 7/406 (1%)

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFD-EMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           ++ P +    L  L++ G +  AL  F      +G ++ST  +   I    +  +   + 
Sbjct: 2   EVSPSLVFEALKKLSNAGAL--ALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIW 59

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
           +++ +++++   ++N    A LI   + + ++V+EA     ++     K +      + +
Sbjct: 60  NLVTDMKQK--GLLNKETFA-LISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLD 116

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                  V   ++V  K  K G       Y   + G   E+ +    E+   +    F  
Sbjct: 117 TLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEP 176

Query: 330 DDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D      LI +   S     AI  F+ M  K   P+      L   L    +  E +E +
Sbjct: 177 DVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFF 236

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           ++  A+ +  +  +YN +V   C S R+ +    I EM++ G+ P    Y+ ++    R 
Sbjct: 237 ELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRA 296

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
              + A  ++ +M   GC  ++ TY I++  F     ++ A++++  M  KG+ P    +
Sbjct: 297 GKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMF 356

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           ++L+  LC E+ L  A   F + ++  +     + S    +L   G
Sbjct: 357 STLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEG 402


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 204/466 (43%), Gaps = 35/466 (7%)

Query: 54  RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           R INP ++T+ +L  GFF +  Q          YH               D + + V+VN
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALE----VYH---------------DMLCEGVEVN 483

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           K  +DS     ++  L Q    ++A ++F +   +   +      +L+  L   G +  A
Sbjct: 484 KFIVDS-----LVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTA 538

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR----KRENSMINGSVIA 229
            K   E+  R +    + + VFI   C   K  +  S+L E+R    K + S  N  +++
Sbjct: 539 FKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVS 598

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                  C+     +A K+L E+++   KP+ I Y  +       G+V + + +L +   
Sbjct: 599 ------HCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRS 348
            G +P +  +R  +      RR+    ++ E +++     D  V N L+  +      R 
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A V    M+  G  P   T + L    CK +  D     Y  +   +   ++ ++N ++ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L + GR+ EA  V+ EM++ GL+P+   Y+ L+    ++     A +L+ +M   G   
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            + TYN LIS F++ G +  A  LF +M ++GV P + TY  L+ G
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/558 (22%), Positives = 218/558 (39%), Gaps = 87/558 (15%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + Y++++     + Q++A   VL  +K   +  + + Y   I    + K  ++AF ++  
Sbjct: 205 VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEG 264

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  N   +     ++L+A L  DG    A  +F EM   G   + + +   I    +  +
Sbjct: 265 MVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGR 324

Query: 205 LGQVLSMLDEVRKR----------------------------------ENSMINGSVIAV 230
             ++LS+L E+  R                                  +N  +NG    V
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTV 384

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI    CK   V+EA +VL E+  +   P+ + +  V   F   G + +     +  ++ 
Sbjct: 385 LI-DALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER 443

Query: 291 GVAPRTNDYREFILGL-----------IVERRICEAKELGEVIV---------SGKFTID 330
           G+ P    Y   I G            +    +CE  E+ + IV         +GK    
Sbjct: 444 GINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEA 503

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
             +     GS  S+D  +     + + + G +PT        + L  RN           
Sbjct: 504 MALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAF---KFGQELMDRN----------- 549

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D   YNV ++ LC  G+ +EA  ++ EM+  GL PD S YN+++ + CR+  
Sbjct: 550 -----MLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGE 604

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
              A KL  +M  S    NL TYN L++     G +E A  L + M+  G +P + T+  
Sbjct: 605 TAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRR 664

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----G 565
           +L+   Q   L    ++    +N  +    ++ +T +  LC  G    AT +L      G
Sbjct: 665 VLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSG 724

Query: 566 LSSD--------LGHSDS 575
           ++ D        LGH  S
Sbjct: 725 IAPDTITFNALILGHCKS 742



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/527 (21%), Positives = 221/527 (41%), Gaps = 38/527 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L    + + +   L+    + ++L+   Y  +I +L +  N  +A  V  E
Sbjct: 345 VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLE 404

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKF 199
           ++   + I P +   +S++      G +D A +    M  RG+  + + +G  I   +KF
Sbjct: 405 MEE--KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKF 462

Query: 200 --------------CENAKLGQVL--SMLDEVR---KRENSMI-----NGSVIAV----- 230
                         CE  ++ + +  S+++ +R   K E +M      +GS +++     
Sbjct: 463 QGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNY 522

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K   +  AFK   EL  R   PD + Y +      ++G   E + +L + R 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRN 582

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
           +G+ P  + Y   I+    +    +A +L   +       +    N L+ G   +     
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    N M+  G  P+  T   + +   +  + D ++++++ +       D+  YN ++ 
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G  R+A  V++EM   G+ PD   +N+L+   C+   L  A   + QM     S 
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ T+N L+     VG I  A  +   M + G+ P+  TY  L+ G  +++N   A  ++
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLY 822

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            + V    +   S  +  +    + G    A +L + +     H  S
Sbjct: 823 CEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTS 869



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 183/427 (42%), Gaps = 20/427 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LLA L+   +   A  +  EM  RGV F  +     +   C N ++    ++ D    
Sbjct: 107 NILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD---- 159

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R   +    VI    +I G+C+      A  V D +  +    D + Y  +   F   G 
Sbjct: 160 RGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ 219

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V     VL   ++ GV P    Y  FI+     + + EA +L E +V     +D   L+A
Sbjct: 220 VDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSA 279

Query: 337 LIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           L+  +   D R   A   F  M + G VP   T   L  +L K  +  EL+ +   + + 
Sbjct: 280 LVAGLCR-DGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSR 338

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF----YNSLMEACCREDL 450
               D+ +Y  ++ +L   G+  E    +++  R  L  ++S     Y  L++A C+   
Sbjct: 339 GVVMDLVTYTALMDWLGKQGKTDE----VKDTLRFALSDNLSLNGVTYTVLIDALCKAHN 394

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+++  +M     S N+ T++ +I+ F + G ++ A      M E+G+ P+  TY +
Sbjct: 395 VDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGT 454

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
           L++G  +     AA EV++  +   V + + I+ + +  L + G    A  L +  S   
Sbjct: 455 LIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS- 513

Query: 571 GHSDSHV 577
           G S  HV
Sbjct: 514 GLSLDHV 520



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 7/192 (3%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKL 457
           D  + N +++ LC +G++  A  +    +  G+   DV  +N+L+   CR      A  +
Sbjct: 134 DGVTVNTLLAGLCRNGQVDAAAALAD--RGGGIHALDVIGWNTLIAGYCRVGDTPAALSV 191

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M A G   ++  YN L++ F   G+++ A  +   M E GV P+  TYT  +   C+
Sbjct: 192 ADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCR 251

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
              ++ AF+++   V + V+L    LS  +  LCR G F  A  L R +   +G   +HV
Sbjct: 252 TKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDK-VGAVPNHV 310

Query: 578 ---ILLKSLADA 586
               L+ SLA A
Sbjct: 311 TYCTLIDSLAKA 322



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L    C+   +   + V   ++A     D+  YN +V+  C +G++  A GV+  MK 
Sbjct: 173 NTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKE 232

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G+DP+V+ Y   +   CR   +  A  L++ M  +G   ++ T + L++     G    
Sbjct: 233 AGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSE 292

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  LF  M + G  P+  TY +L++ L +    +    +  + V+  V++     +  M 
Sbjct: 293 AYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMD 352

Query: 549 SLCRRGHFLVATKLLR-GLSSDLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
            L ++G        LR  LS +L  +  ++ +L+ +L  A  V+ A + +  ++E S
Sbjct: 353 WLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKS 409



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D +  N+L+ + CR  LLRPA  L      +  +     YNIL++  S+       L   
Sbjct: 72  DPASLNALLYSHCRLRLLRPAIALLRSSRPTTVA-----YNILLAALSDHAHAPAVLA-- 124

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
             M ++GV  D  T  +LL GLC+   + AA  + ++ 
Sbjct: 125 -EMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRG 161


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 218/481 (45%), Gaps = 23/481 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L++ +++  L    ++    ++L ++  N +  D   Y   +  + +  +T  A ++  +
Sbjct: 183 LTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRK 242

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++     I P   I ++++  L  DG   ++  +F EM  +G+  + + +   I  FC +
Sbjct: 243 ME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +      +L E+ +R+   I+ +V+    +I+ F K  +  EA ++ DE+  R   P+ 
Sbjct: 302 GRWSAAQRLLQEMLERK---ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  + + F     +   E +       G +P    +   I G    +RI +  EL   
Sbjct: 359 ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE 418

Query: 322 IVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +       +    N LI     + D  +A+     MI  G  P + T + L   LC   K
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478

Query: 381 SDELVEVYKV-------LSANDYFTDME----SYNVMVSFLCTSGRLREAYGVIQEMKRK 429
             + +E++K        L A+  F  +E    +YN+++  L   G+  EA  + +EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+ PD   Y+S+++  C++  L  A +++  M +   S N+ T+N LI+ + + G ++  
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILST 545
           L LF  M  +G+  DA  Y +L+ G  +  N+  A ++F +     V  D +  R++L+ 
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 546 F 546
           F
Sbjct: 659 F 659



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 194/452 (42%), Gaps = 51/452 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  +      D  + ++ +M  + +      F + I  FC  +KL   LS   ++ K
Sbjct: 85  NKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTK 144

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +    V    ++HG C   RV EA  +  ++    C+PD + +  +       G V
Sbjct: 145 L--GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRV 198

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L +  + G+ P    Y  F+ G+          ++G+ + +         LN L
Sbjct: 199 VEAVALLDRMVENGLQPDQITYGTFVDGMC---------KMGDTVSA---------LNLL 240

Query: 338 --IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
             +  +S I P   +V ++ +I+                LCK  +  +   ++  +    
Sbjct: 241 RKMEEISHIKPN--VVIYSAIID---------------GLCKDGRHSDSHNLFIEMQDKG 283

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F ++ +YN M+   C SGR   A  ++QEM  + + P+V  YN+L+ A  +E     A 
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+D+M   G   N  TYN +I  F +   ++ A  +F+ M  KG +PD  T+T+L++G 
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDL 570
           C    +    E+ ++     ++      +T +   C  G    A  L +     G+  D+
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQES 602
              ++   LL  L D  +++ A+E  K +Q+S
Sbjct: 464 VTCNT---LLDGLCDNGKLKDALEMFKAMQKS 492



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 160/379 (42%), Gaps = 49/379 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+     +G    A +++DEM  RG+  +TI +   I  FC+  +L     M   +  
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 386

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +  S          +I G+C  KR+++  ++L E+  R    + + Y  +   F L+G +
Sbjct: 387 KGCS--PDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 444

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID------- 330
                + ++    GV P        + GL    ++ +A E+ + +   K  +D       
Sbjct: 445 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 504

Query: 331 --DDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              DVL  N LI G ++      A   +  M  +G VP   T S++   LCK+++ DE  
Sbjct: 505 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +++  + +  +  ++ ++N +++  C +GR+ +   +  EM R+G+  D   Y +     
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYIT----- 619

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
                                         LI  F +VG I GAL +F  M+  GV PD 
Sbjct: 620 ------------------------------LIYGFRKVGNINGALDIFQEMISSGVYPDT 649

Query: 506 TTYTSLLEGLCQETNLQAA 524
            T  ++L G   +  L+ A
Sbjct: 650 ITIRNMLTGFWSKEELERA 668


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/531 (17%), Positives = 209/531 (39%), Gaps = 76/531 (14%)

Query: 78  PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137
           P    +  ++ + ++ L+ +  ++ +   L+++++  +          + +  +     +
Sbjct: 49  PGTGDAARAHEAAVRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDR 108

Query: 138 AFSVFNEVKFNCEDIG------PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           A   F        D+G      P + N L+  L  +  +   + ++D M   GV  +   
Sbjct: 109 ALKTFYRAV---HDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFT 165

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVL----------------- 231
           + + +   C+N ++G    MLDE+ ++    + +   ++++VL                 
Sbjct: 166 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP 225

Query: 232 --------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
                   I+   C+  R++E F V+ ++  R  +P+ I Y  + + F   G +     +
Sbjct: 226 PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAI 285

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L +    G  P    +   + GL  + R+ +A ++                         
Sbjct: 286 LARMVITGCTPNVVTFTALVRGLFDDGRVHDALDM------------------------- 320

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    + +M+ +G  P+  + + L + LC          +   +  +  F ++ +Y
Sbjct: 321 ---------WRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTY 371

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++     +G L  A  +  +M R G  P+V  Y ++++  C++ +   AK L D+M  
Sbjct: 372 STLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLL 431

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
             C  N  T+N LI    +   +  AL +FH M   G  P+  TY  L+ GL +E N   
Sbjct: 432 ENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGD 491

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSD 569
           A  +  +  +H + L+    +T +  LC     R     V   +++G+  +
Sbjct: 492 ALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPN 542



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 181/443 (40%), Gaps = 62/443 (13%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY++I+ +L    ++  + SV+  +          V R + P++I       AF    E+
Sbjct: 230 SYNAIVLALCREFRMQEVFSVVSDM----------VGRGLQPNVITYTTIVDAFCKAGEL 279

Query: 146 KFNCEDIG--------PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +  C  +         P +    +L+  L  DG + +AL M+  M   G   ST+ + + 
Sbjct: 280 RMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNIL 339

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C    L    S+L+ + ++     N    + LI  GF K   +  A  + +++   
Sbjct: 340 IRGLCSVGDLKGASSILNSM-EQHGCFPNVRTYSTLI-DGFSKAGDLGGAISIWNDMSRS 397

Query: 256 ECKPDFIAYRIVAEEF--KLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRI 312
            CKP+ + Y  + + F  KLM   F +   L  K  L    P T  +   I      R +
Sbjct: 398 GCKPNVVVYTNMVDVFCKKLM---FNQAKSLIDKMLLENCPPNTVTFNTLI------RSL 448

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C+ + +G                             A+  F+ M   G VP   T + L 
Sbjct: 449 CDCRRVGR----------------------------ALGVFHEMRRHGCVPNGRTYNELI 480

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L +     + + +   + ++     + +YN +VS LC +   REA   + +M  +G+ 
Sbjct: 481 HGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 540

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+   +++++ A C+E  +R A  +   M    C  N+  Y IL+++     ++  A+  
Sbjct: 541 PNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTY 600

Query: 493 FHNMLEKGVAPDATTYTSLLEGL 515
              ML +G+ P+  T+  L+ G+
Sbjct: 601 LLKMLYEGIYPNTVTWNVLVRGV 623


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A+ + D M  RG + + + +GV +   C+   +    ++L+   K E + I   V+    
Sbjct: 133 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN---KMEAAKIEADVVIFNT 189

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   CK + V++A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RS 348
           + P    +   I   + E +  EA++L + ++  K +ID D+   N+LI      D    
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMI--KRSIDPDIFTYNSLINGFCMHDRLDK 307

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F FM+ K   P L T + L K  CK  + ++  E+++ +S      D  +Y  ++ 
Sbjct: 308 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 367

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G    A  V ++M   G+ PD+  Y+ L++  C    L  A +++D M  S    
Sbjct: 368 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 427

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++  Y  +I    + G+++    LF ++  KGV P+  TY +++ GLC +  LQ A+ + 
Sbjct: 428 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 487

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            K      +      +T + +  R G    + +L+R + S
Sbjct: 488 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 527



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 177/414 (42%), Gaps = 44/414 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G+C GKR+ +A  ++D++     +PD I +  +     L     E   ++ +  + G
Sbjct: 85  LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 144

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P    Y   + GL     I  A  L   + + K   D  + N +I S+        A+
Sbjct: 145 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 204

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F  M  KG  P + T S+L   LC   +  +  ++   +       ++ ++N ++   
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 264

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G+  EA  +  +M ++ +DPD+  YNSL+   C  D L  AK++++ M +  C  +L
Sbjct: 265 VKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDL 324

Query: 471 KTYNILISKFSEV-----------------------------------GEIEGALRLFHN 495
            TYN LI  F +                                    G+ + A ++F  
Sbjct: 325 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 384

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+  GV PD  TY+ LL+GLC    L+ A EVF+     ++ L   I +T +  +C+ G 
Sbjct: 385 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 444

Query: 556 F-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604
                 L  +  L+G+  ++    ++  ++  L   R ++ A   +K ++E  P
Sbjct: 445 VDDGWDLFCSLSLKGVKPNVV---TYNTMISGLCSKRLLQEAYALLKKMKEDGP 495



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 214/506 (42%), Gaps = 66/506 (13%)

Query: 42  GLRDSLSPSLVARVIN----PYLLTHHSLALGFF--NWASQ-------------QPNFTH 82
           G R S + +LV +++     P  +T  +L  G F  N AS+             QPN   
Sbjct: 92  GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL-- 149

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
             ++Y  ++  L     I+   ++L +++  KI  D  ++  II SL + ++   A ++F
Sbjct: 150 --VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 207

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E++   + I P +   +SL++ L S G   +A ++  +M  + +  + + F   I  F 
Sbjct: 208 KEME--TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 265

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +  K  +   + D++ KR    I+  +     +I+GFC   R+++A ++ + +  ++C P
Sbjct: 266 KEGKFVEAEKLHDDMIKRS---IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 322

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y  + + F     V +   + ++    G+   T  Y   I GL  +     A+++ 
Sbjct: 323 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV- 381

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                            F  M+  G  P + T S L   LC   
Sbjct: 382 ---------------------------------FKQMVSDGVPPDIMTYSILLDGLCNNG 408

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +EV+  +  ++   D+  Y  M+  +C +G++ + + +   +  KG+ P+V  YN
Sbjct: 409 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 468

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   C + LL+ A  L  +M   G   +  TYN LI      G+   +  L   M   
Sbjct: 469 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 528

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAF 525
               DA+T   L+  +  +  L  +F
Sbjct: 529 RFVGDAST-IGLVANMLHDGRLDKSF 553



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 3/304 (0%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +L K  KLG  P        + G    +RI +A  L + +V   +  D      LI  + 
Sbjct: 66  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 125

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+++G  P L T   +   LCKR   D    +   + A     D+ 
Sbjct: 126 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 185

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            +N ++  LC    + +A  + +EM+ KG+ P+V  Y+SL+   C       A +L   M
Sbjct: 186 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 245

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + NL T+N LI  F + G+   A +L  +M+++ + PD  TY SL+ G C    L
Sbjct: 246 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 305

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A ++F   V+ D        +T +   C+       T+L R +S    +G + ++  L
Sbjct: 306 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 365

Query: 580 LKSL 583
           ++ L
Sbjct: 366 IQGL 369


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 216/486 (44%), Gaps = 17/486 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           S + +L  LS S +     S  K + V  ++     Y  +I  L +  + + A S+F E+
Sbjct: 218 SCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEM 277

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   + + P+I   NSL+      G +  A+ +F+EM   G E   I +   I  FC+  
Sbjct: 278 K--AKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFE 335

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           ++ Q    L  +++R   +    V    +I  FCK   + EA K   ++     +P+   
Sbjct: 336 RIPQAFEYLHGMKQR--GLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFT 393

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + +    +G + E   +  + ++ GV      Y   + GL  + R+ EA+EL   ++
Sbjct: 394 YTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALL 453

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              +T++  +  +L  G + +     A+     M +K   P L         LC++N+ +
Sbjct: 454 KAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIE 513

Query: 383 ELVEVYKV-----LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + + V +      L+AN Y      Y  ++      G+  EA  ++QEM+  G+   V  
Sbjct: 514 DSMAVIREMMDCGLTANSYI-----YTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y  L++  C+  L++ A + +D M  +G   N+  Y  LI    +   +E A  LF+ ML
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEML 628

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           +KG++PD   YTSL++G  +  N   A  + N+ V   + L     ++ +    R G   
Sbjct: 629 DKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQ 688

Query: 558 VATKLL 563
           +A  LL
Sbjct: 689 LAKSLL 694



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 1/291 (0%)

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C+P F  +  +      +G + E      K  K  V P+     E +  L    +   A 
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              + +V    +      N +IG ++   D  +A   F  M  KG  P + T ++L    
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K       V V++ +       D+ +YN +++  C   R+ +A+  +  MK++GL P+V
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNV 356

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y++L++A C+  +L  A K +  M   G   N  TY  LI    ++G++  A +L   
Sbjct: 357 VTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESE 416

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           M + GV  +  TYT+LL+GLC++  ++ A E+F   +     L + I ++ 
Sbjct: 417 MQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSL 467



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 103/218 (47%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ FF  M+  G  P++ T + +   L +    +    +++ + A     D+ +YN ++ 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                G L  A  V +EMK  G +PDV  YNSL+   C+ + +  A +    M   G   
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQP 354

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY+ LI  F + G +  A + F +M+  G+ P+  TYTSL++  C+  +L  AF++ 
Sbjct: 355 NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLE 414

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           ++     V L     +  +  LC  G    A +L   L
Sbjct: 415 SEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 133/312 (42%), Gaps = 2/312 (0%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-A 349
           G++P    Y   I  L  E  +  A+ L E + +     D    N+LI     +   + A
Sbjct: 246 GLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGA 305

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  M + G  P + T ++L    CK  +  +  E    +       ++ +Y+ ++  
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDA 365

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C +G L EA     +M R GL P+   Y SL++A C+   L  A KL  +M  +G + N
Sbjct: 366 FCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLN 425

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY  L+    E G +  A  LF  +L+ G   +   YTSL  G  +   ++ A ++  
Sbjct: 426 IVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILE 485

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREV 589
           +    ++     +  T +  LCR+     +  ++R +  D G + +  I    +    +V
Sbjct: 486 EMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM-MDCGLTANSYIYTTLIDAYFKV 544

Query: 590 EMAIEHIKWIQE 601
               E +  +QE
Sbjct: 545 GKTTEAVNLLQE 556


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 207/449 (46%), Gaps = 10/449 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++++S+L  L   R++    S+LK+++VN    D   Y  +   L++  +   A  ++ +
Sbjct: 282 ITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQ 341

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                  I     + LL  L   G ++ A ++  + +  G+    + +  F+  +C    
Sbjct: 342 ATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGD 401

Query: 205 LGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + + +  ++ +     R NS+   S     +I  FC  K +++A + + ++  +   P  
Sbjct: 402 MNKAILTIERMESFGLRPNSITFNS-----LIDKFCDMKEMDKAEEWVKKMAEKGVTPSV 456

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  + + +  + +      +L++  ++GV P    Y   I  L  + +I EA+ +   
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRD 516

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++      +  V N LI GS      + A+ FF+ M+     PTL T + L   LCK+ K
Sbjct: 517 MICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGK 576

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  +    ++++ +  D+ +YN ++S    +G + +  G+ + MK  G+ P V  Y+ 
Sbjct: 577 LTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHP 636

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+  C +E  +   +KL+++M       +   YN +I  ++E+G  + A  L   ML++G
Sbjct: 637 LISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQG 695

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + PD  TY SL+ G  +E  L    ++ N
Sbjct: 696 IHPDKMTYNSLILGHFREGKLSNIKDLVN 724



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 50/418 (11%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
            ++  D M  RGV  +   + V I   C   ++     M DE+    N  + GS++    
Sbjct: 195 GMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC---NINLVGSIVTYNT 251

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G+CK   ++ AFK+ + ++ +   P+ I +  +      M  + E   +LK+    G
Sbjct: 252 LIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNG 311

Query: 292 VAP---------------------------------RTNDYREFIL--GLIVERRICEAK 316
             P                                 R N+Y   IL  GL  + ++ +A+
Sbjct: 312 FMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAE 371

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           E+ +         D+ + N  +     I D   AI+    M   G  P   T ++L    
Sbjct: 372 EILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKF 431

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF---LCTSGRLREAYGVIQEMKRKGLD 432
           C   + D+  E  K ++       +E+YN ++     LCT  R    + ++++M+  G+ 
Sbjct: 432 CDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR---CFQILEQMEEIGVK 488

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y SL+   C++  +  A+ +   M   G   N + YN+LI     VG+++ ALR 
Sbjct: 489 PNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRF 548

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK--SVNH--DVMLARSILSTF 546
           F  M+   ++P   TY  L++GLC++  L  A +   +  S  H  DV+   S++S +
Sbjct: 549 FDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGY 606



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 42/411 (10%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I N L+  L  +  I +A KMFDEM +  +  S + +   I  +C+  +L     M +  
Sbjct: 213 IYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRE-- 270

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R +E S+    +    ++ G CK ++++EA  +L E+ +    PD   Y I+ +      
Sbjct: 271 RMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCD 330

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDV 333
                  + ++  + G+  R N+Y   IL  GL  + ++ +A+E+ +         D+ +
Sbjct: 331 DGNGAMELYEQATEKGI--RINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVI 388

Query: 334 LNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N  +     I D   AI+    M   G  P   T ++L    C   + D+  E  K ++
Sbjct: 389 YNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA 448

Query: 393 ANDYFTDMESYNVMV-----------------------------------SFLCTSGRLR 417
                  +E+YN ++                                   + LC  G++ 
Sbjct: 449 EKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKIL 508

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  V+++M  +G+ P+   YN L++  C    ++ A + +D+M  S  S  L TYN+LI
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLI 568

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
               + G++  A      +   G +PD  TY SL+ G     N+     ++
Sbjct: 569 DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLY 619



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 188/449 (41%), Gaps = 17/449 (3%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N+T S L     L  L    ++   + +LK+   N +  D  +Y   +    +  +  KA
Sbjct: 351 NYTGSIL-----LNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKA 405

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI-- 196
                 ++           NSL+        +D A +   +M+ +GV  S   +   I  
Sbjct: 406 ILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDG 465

Query: 197 -WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
             K C   +  Q+L  ++E+  + N +  GS+I  L     CK  ++ EA  VL ++  R
Sbjct: 466 YGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCL-----CKDGKILEAEIVLRDMICR 520

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P+   Y ++ +   ++G V +      +  +  ++P    Y   I GL  + ++ EA
Sbjct: 521 GVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEA 580

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           ++    I S   + D    N+LI G  ++ +    +  +  M   G  PT+ T   L   
Sbjct: 581 EDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG 640

Query: 375 LCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             K  +  ELVE +Y  +   +   D   YN M+      G  ++AY + Q M  +G+ P
Sbjct: 641 CSK--EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHP 698

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D   YNSL+    RE  L   K L + M A   +    TY+IL+    ++ +  GA   +
Sbjct: 699 DKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWY 758

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             M+E    P+A+    L  GL QE  LQ
Sbjct: 759 REMVENNFLPNASICNELTAGLEQEGRLQ 787



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           A+  +V   + +  + F + M ++G  P +   + L   LC+  +  +  +++  +   +
Sbjct: 182 AIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNIN 241

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + +YN ++   C  G L  A+ + + MK K + P++  +NSL+   C+   ++ A+
Sbjct: 242 LVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEAR 301

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L  +M  +G   +  TY+IL        +  GA+ L+    EKG+  +  T + LL GL
Sbjct: 302 SLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGL 361

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C++  ++ A E+  K   + ++    I +TF+   CR G    A   +  + S  G   +
Sbjct: 362 CKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMES-FGLRPN 420

Query: 576 HVI---LLKSLADAREVEMAIEHIKWIQESSPT 605
            +    L+    D +E++ A E +K + E   T
Sbjct: 421 SITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVT 453



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 97/178 (54%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A+  + FM   G++P+L +LS L   L    +  ++V+++  +  + + TD   Y   
Sbjct: 123 REAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKA 182

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +        L+     +  M+++G+ P+V  YN L+   CRE  +R A+K++D+M     
Sbjct: 183 IQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINL 242

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            G++ TYN LI  + +VGE++ A ++   M EK VAP+  T+ SLL GLC+   ++ A
Sbjct: 243 VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEA 300



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 162/387 (41%), Gaps = 14/387 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++++S++      ++++  +  +K++    +T     Y  +I    +     + F +  +
Sbjct: 422 ITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQ 481

Query: 145 VKFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +    E+IG  P + +  SL+  L  DG I  A  +  +M  RGV  +   + + I   C
Sbjct: 482 M----EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSC 537

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K+   L   DE+ + E   I+ +++   ++I G CK  ++ EA   L ++      P
Sbjct: 538 MVGKVKDALRFFDEMMRSE---ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSP 594

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  +   +   G+V +   + +  + LG+ P    Y   I G   E  I   ++L 
Sbjct: 595 DVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLY 653

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             ++      D  V NA+I   + I + + A      M+++G  P   T ++L     + 
Sbjct: 654 NEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFRE 713

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K   + ++   + A +     ++Y+++V   C       AY   +EM      P+ S  
Sbjct: 714 GKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASIC 773

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASG 465
           N L     +E  L+  + +  +M   G
Sbjct: 774 NELTAGLEQEGRLQEVQVICSEMNVKG 800



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 9/208 (4%)

Query: 362 VPTLSTLSNLSKNLCKRNKS-DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
           +P   TLS++  ++C ++K   E VE+Y+ +  +     + S +++ S L    +  +  
Sbjct: 102 IPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVV 161

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  E++  G   D   Y   ++A  +   L+   +  D M   G   N+  YN+LI   
Sbjct: 162 DLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGL 221

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDV 536
                I  A ++F  M    +     TY +L++G C+   L AAF++      KSV  ++
Sbjct: 222 CREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNI 281

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLR 564
           +   S+LS     LC+      A  LL+
Sbjct: 282 ITFNSLLS----GLCKMRKMKEARSLLK 305


>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 753

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/546 (22%), Positives = 244/546 (44%), Gaps = 21/546 (3%)

Query: 22  NRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT 81
           +R    R WT  L+ ++  L        SLV  V++    + H  AL FF W  +   F 
Sbjct: 84  SRMMANRPWTTRLQNSIRNL--VPHFDHSLVYNVLHAARNSEH--ALQFFRWVERAGLFK 139

Query: 82  HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           +   ++  I++ L  + ++N    +L  +    +  D  ++  +I S  +    Q+A  +
Sbjct: 140 NDRDTHMKIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKI 199

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           FN++     +   +  ++L  V+   G    A ++F++M + G++ +   + + +W F  
Sbjct: 200 FNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFL 259

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           + +L   +   D+++ R    I+  V+    +I+GF + K++EEA K+  E++ +   P 
Sbjct: 260 SLRLETAMRFYDDMKNRG---ISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPT 316

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  + + +  +  V +   +L++ +   + P  + Y   + GL    ++ EAK++  
Sbjct: 317 VISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILI 376

Query: 321 VIVSGKFTIDDD--VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCK 377
            +V+      D+   L  L     + D R+A    N M+ +  +PT       L +N CK
Sbjct: 377 EMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMM-RLHIPTEAGHYGVLIENFCK 435

Query: 378 RNKSDELVEVYKVLSANDYFTDMES--------YNVMVSFLCTSGRLREAYGVIQEMKRK 429
             + D  V+    L   +     +S        YN M+ +LC+ G+  +A    +++ +K
Sbjct: 436 AEEYDRAVKYLDKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKK 495

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+   ++F N+L+    +E     A +++  M   G   +   Y ++I  +   GE   A
Sbjct: 496 GVQDPLAF-NNLICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADA 554

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
                 MLE G  PD + + S++E L ++  +Q A  V    V   V     ++   + +
Sbjct: 555 KTALDGMLEDGHVPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEA 614

Query: 550 LCRRGH 555
           L  RGH
Sbjct: 615 LLMRGH 620



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 9/256 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+  FN M E G   ++ +   L K + +R +      V+  +  +       +YN+M
Sbjct: 194 QEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIM 253

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +     S RL  A     +MK +G+ PDV  YN+++    R   +  A+KL+ +M     
Sbjct: 254 LWGFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNI 313

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +  + +Y  +I  +  V  ++  LRL   M    + P+  TY++LL GLC    +  A +
Sbjct: 314 APTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKD 373

Query: 527 VFNKSV-NHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-----SSDLGHSDSHVILL 580
           +  + V  H      SI    +   C+ G    A  +L  +      ++ GH   + +L+
Sbjct: 374 ILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGH---YGVLI 430

Query: 581 KSLADAREVEMAIEHI 596
           ++   A E + A++++
Sbjct: 431 ENFCKAEEYDRAVKYL 446



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/484 (18%), Positives = 188/484 (38%), Gaps = 51/484 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ +L    LS ++         +K   I+ D   Y  +I    + K  ++A  +F E+
Sbjct: 249 TYNIMLWGFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEM 308

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   ++I P + +  +++    +   +D+ L++ +EM    ++ +   +   +   C+  
Sbjct: 309 K--GKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAW 366

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLI------------------------------- 232
           K+ +   +L E+  R  +  + S+   L+                               
Sbjct: 367 KMTEAKDILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHY 426

Query: 233 ---IHGFCKGKRVEEAFKVLDELRIREC--KPDFI------AYRIVAEEFKLMGSVFERE 281
              I  FCK +  + A K LD+L  +E   +P         AY  + +     G   + E
Sbjct: 427 GVLIENFCKAEEYDRAVKYLDKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAE 486

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS- 340
           +  ++  K GV      +   I G   E     A E+ +++       D D    +I S 
Sbjct: 487 IFFRQLMKKGVQDPLA-FNNLICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESY 545

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +   +P  A    + M+E G VP  S   ++ ++L +  +      V K +       +M
Sbjct: 546 LRKGEPADAKTALDGMLEDGHVPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENM 605

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           +    ++  L   G + EA G I+ + + G   +   ++ L+     +     A KL D 
Sbjct: 606 DLVGKILEALLMRGHVEEALGRIELLMQSGFHVN---FDDLLSVLSEKGKTIAALKLLDF 662

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
                 + + K+Y+ ++      G+   A  +   +++KG   D ++   L++ L QE N
Sbjct: 663 ALERDFNLDFKSYDKVLDALLAAGKTLNAYSILCKIMQKGGVSDWSSSKDLIKSLNQEGN 722

Query: 521 LQAA 524
            + A
Sbjct: 723 TKQA 726


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 248/557 (44%), Gaps = 45/557 (8%)

Query: 23  RTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH 82
           R    R WT  L+ ++  L        SLV  V++    + H  AL FF W  +   F H
Sbjct: 95  RMMANRAWTTRLQNSIRSL--VPQFDHSLVWNVLHGSRNSDH--ALQFFRWVERAGLFRH 150

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
              ++  I++ L  + ++N    +L  +    +  D  ++  +I S  +    Q++  VF
Sbjct: 151 DRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVF 210

Query: 143 NEVKFNCEDIGPEIC----NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            ++K    ++G E      ++L  V+   G    A + F+ M + GV  +   + + IW 
Sbjct: 211 QKMK----ELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWG 266

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
           F  + K+       +E+++R    I+  V+    +I+G+ + K++EEA K   E++ R  
Sbjct: 267 FFLSLKVETANRFFEEMKERR---ISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNI 323

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-- 315
           +P  I+Y  + + +  +G V +   + ++ +  G+ P    Y   + GL    ++ EA  
Sbjct: 324 EPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQN 383

Query: 316 --KELGEVIVSGKFTIDDDVLNALI------GSV-SSIDPRSAIVFFNFMIEKGRVPTLS 366
             KE+ E  ++ K   D+ +   LI      G + ++ D   A++  +   E G      
Sbjct: 384 VVKEMVERYIAPK---DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGV-- 438

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYF------TDMES--YNVMVSFLCTSGRLRE 418
               L +N CK    D  V++   L   +         +MES  YN+++ +LC SG+  +
Sbjct: 439 ----LIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSK 494

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  + +++ +KG+   ++F N+L+    +E     A ++   M           Y +LI 
Sbjct: 495 AETLFRQLMKKGVQDPIAF-NNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIE 553

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F + GE   A      M+E G  PD++ + S++E L ++  +Q A  V N  V   V  
Sbjct: 554 SFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKE 613

Query: 539 ARSILSTFMISLCRRGH 555
              +++  + +L  RGH
Sbjct: 614 NMDLVAKILEALLLRGH 630



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 2/239 (0%)

Query: 330 DDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D+D+   LI S       + ++  F  M E G   T+ +   L K + +R +       +
Sbjct: 186 DEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYF 245

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +          +YN+M+     S ++  A    +EMK + + PDV  YN+++    R 
Sbjct: 246 NAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRI 305

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A+K + +M        + +Y  +I  +  VG ++  LRLF  M   G+ P+A TY
Sbjct: 306 KKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTY 365

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLA-RSILSTFMISLCRRGHFLVATKLLRGL 566
           ++LL GLC    +  A  V  + V   +     SI    +   C+ G    A  +L+ +
Sbjct: 366 STLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAM 424


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 248/557 (44%), Gaps = 45/557 (8%)

Query: 23  RTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH 82
           R    R WT  L+ ++  L        SLV  V++    + H  AL FF W  +   F H
Sbjct: 95  RMMANRAWTTRLQNSIRSL--VPQFDHSLVWNVLHGSRNSDH--ALQFFRWVERAGLFRH 150

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
              ++  I++ L  + ++N    +L  +    +  D  ++  +I S  +    Q++  VF
Sbjct: 151 DRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVF 210

Query: 143 NEVKFNCEDIGPEIC----NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            ++K    ++G E      ++L  V+   G    A + F+ M + GV  +   + + IW 
Sbjct: 211 QKMK----ELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWG 266

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
           F  + K+       +E+++R    I+  V+    +I+G+ + K++EEA K   E++ R  
Sbjct: 267 FFLSLKVETANRFFEEMKERR---ISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNI 323

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-- 315
           +P  I+Y  + + +  +G V +   + ++ +  G+ P    Y   + GL    ++ EA  
Sbjct: 324 EPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQN 383

Query: 316 --KELGEVIVSGKFTIDDDVLNALI------GSV-SSIDPRSAIVFFNFMIEKGRVPTLS 366
             KE+ E  ++ K   D+ +   LI      G + ++ D   A++  +   E G      
Sbjct: 384 VVKEMVERYIAPK---DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGV-- 438

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYF------TDMES--YNVMVSFLCTSGRLRE 418
               L +N CK    D  V++   L   +         +MES  YN+++ +LC SG+  +
Sbjct: 439 ----LIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSK 494

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  + +++ +KG+   ++F N+L+    +E     A ++   M           Y +LI 
Sbjct: 495 AETLFRQLMKKGVQDPIAF-NNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIE 553

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F + GE   A      M+E G  PD++ + S++E L ++  +Q A  V N  V   V  
Sbjct: 554 SFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKE 613

Query: 539 ARSILSTFMISLCRRGH 555
              +++  + +L  RGH
Sbjct: 614 NMDLVAKILEALLLRGH 630



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 2/239 (0%)

Query: 330 DDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D+D+   LI S       + ++  F  M E G   T+ +   L K + +R +       +
Sbjct: 186 DEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYF 245

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +          +YN+M+     S ++  A    +EMK + + PDV  YN+++    R 
Sbjct: 246 NAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRI 305

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A+K + +M        + +Y  +I  +  VG ++  LRLF  M   G+ P+A TY
Sbjct: 306 KKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTY 365

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLA-RSILSTFMISLCRRGHFLVATKLLRGL 566
           ++LL GLC    +  A  V  + V   +     SI    +   C+ G    A  +L+ +
Sbjct: 366 STLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAM 424


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 226/519 (43%), Gaps = 20/519 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVK--VNKITLDSSV-YRFIIPSLIQGKNTQ 136
           F+H P     IL S       N ID  +      +N   L S + +  II S+++ K+  
Sbjct: 48  FSHCPKQNAKILSSF------NGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCP 101

Query: 137 KAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A S+  ++ F  + + P I   +  +      G +  A  +   +  RG + + I    
Sbjct: 102 VAISLLKQMVF--KGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTT 159

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            +   C N ++ + +   D V  +   M+   V    +I+G CK  R  +AF++L E+  
Sbjct: 160 VMKGLCINGEVQKAMDFHDNVAAQ--GMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEG 217

Query: 255 RECKPDFIAYRIVAEEF-KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           +  KP+ + Y ++ + F K   +   R++ LK    +G+ P    Y   I G     +  
Sbjct: 218 QVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIV-DMGIDPDILTYTSLIRGFCRTGQWG 276

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLS 372
           E K+L   +V+     +    N LI +         A   FN M+++G+ P + T + L 
Sbjct: 277 EVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI 336

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              C      E  +++  +       D+ SY +++   C   R+ EA  +  EM+ K + 
Sbjct: 337 SGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMV 396

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            D+  Y+SL++  C+   +  A +L+  +   G   N+ TYNILI  F ++ +I+  + L
Sbjct: 397 LDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIEL 456

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  M  KG+ P   TY  L+ G C+   ++ A  + +   + ++       ++    LC+
Sbjct: 457 FKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCK 516

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
            G    A +L + +       D  ++ +LL +   A++V
Sbjct: 517 SGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 180/412 (43%), Gaps = 9/412 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++  +++K L ++ ++         V    + LD   Y  +I  L +   + 
Sbjct: 151 QPN----NITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSI 206

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF +  E++         I N ++     D     A  ++ ++   G++   + +   I
Sbjct: 207 DAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLI 266

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
             FC   + G+V  ++ E+    N  IN +V    ++I  FC+  ++ EA  + + +  R
Sbjct: 267 RGFCRTGQWGEVKQLMCEM---VNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKR 323

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             +PD + +  +     L G+V E   +     + G+ P    Y   I+G    +RI EA
Sbjct: 324 GQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEA 383

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             L   +      +D  + ++LI G   S     A   F+ +   G  P + T + L   
Sbjct: 384 VSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDA 443

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            CK    D  +E++K++        + +YN++++  C S R+REA  ++  M+ K L PD
Sbjct: 444 FCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPD 503

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              YNSL +  C+   +  A +L+  M   G   ++ TYN+L+  F +  ++
Sbjct: 504 SITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 189/418 (45%), Gaps = 12/418 (2%)

Query: 201 ENAKLGQVLSMLDEVRKRENSMIN----GSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
           +NAK+    + +D+     N +IN     SVI    II    K K    A  +L ++  +
Sbjct: 54  QNAKILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFK 113

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P      I    +  +G +     VL    K G  P        + GL +   + +A
Sbjct: 114 GVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKA 173

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSK 373
            +  + + +    +D+     LI  +  I  RS   F      +G+V  P +   + +  
Sbjct: 174 MDFHDNVAAQGMLLDEVCYGTLINGLCKIG-RSIDAFQLLQEMEGQVVKPNIVIYNMIID 232

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           + CK   + +  ++Y  +       D+ +Y  ++   C +G+  E   ++ EM  K ++P
Sbjct: 233 SFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINP 292

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V  +N L++A CR+  +  A+ +++ M   G   ++ T+N LIS     G +  A +LF
Sbjct: 293 NVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLF 352

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             + E+G+ PD  +YT L+ G C+   +  A  +FN+    +++L   + S+ +  LC+ 
Sbjct: 353 DTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKS 412

Query: 554 GHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWI--QESSPTML 607
           G    A +L   +++D    +  ++ IL+ +    ++++M IE  K +  +  +PT+L
Sbjct: 413 GRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVL 470


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 206/447 (46%), Gaps = 42/447 (9%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL+ +A     D  + + ++M + G+  +   + + +  FC  ++L   L++L ++ K  
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLG 146

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  S +    ++G+C GKR+ EA  ++D++     KPD + +  +     L    
Sbjct: 147 YEPDIVTLSSL----LNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKA 202

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++ +    G  P    Y   + GL      C+  ++             D+  +L
Sbjct: 203 SEAVALIDRMVARGCQPDLFTYGTVVNGL------CKRGDI-------------DLALSL 243

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           +  +      + +V +N +I+                LCK    D+  +++  +      
Sbjct: 244 LKKMEKGKIEANVVIYNTIID---------------GLCKYKHMDDAFDLFNKMETKGIK 288

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ +YN ++S LC  GR  +A  ++ +M  + ++P+V  +NSL++A  +E  L  A+KL
Sbjct: 289 PDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKL 348

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +D+M       N+ TYN LI+ F     ++ A ++F  M+ K   PD  TY +L++G C+
Sbjct: 349 FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCK 408

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--S 575
              ++   E+F +     ++      +T +  L + G   +A K+ + + SD    D  +
Sbjct: 409 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 468

Query: 576 HVILLKSLADAREVEMAIEHIKWIQES 602
           + ILL  L    ++E A+   +++Q+S
Sbjct: 469 YSILLDGLCKYGKLEKALVVFEYLQKS 495



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 200/436 (45%), Gaps = 11/436 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L        A+ + D M  RG +     +G  +   C+   +   LS+L   +K
Sbjct: 190 NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL---KK 246

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I  +V+    II G CK K +++AF + +++  +  KPD   Y  +       G 
Sbjct: 247 MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGR 306

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-- 334
             +   +L    +  + P    +   I     E ++ EA++L + ++  + +ID +++  
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI--QRSIDPNIVTY 364

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N+LI      D    A   F  M+ K  +P + T + L K  CK  + +E +E+++ +S 
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +  +YN ++  L  +G    A  + ++M   G+ PD+  Y+ L++  C+   L  
Sbjct: 425 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 484

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  +++ +  S    N+ TYNI+I    + G++E    LF ++  KGV P+   YT+++ 
Sbjct: 485 ALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 544

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LG 571
           G C++   + A  +F +      +      +T + +  R G    + +L++ + S   +G
Sbjct: 545 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVG 604

Query: 572 HSDSHVILLKSLADAR 587
            + +  +++  L D R
Sbjct: 605 DASTISMVINMLHDGR 620



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 37/247 (14%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +S +    A+  F  M++    P++   S L   + K NK D ++ + + +       +
Sbjct: 56  GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 115

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +Y+++++  C   +L  A  V+ +M + G +PD+   +SL+   C    +  A  L D
Sbjct: 116 HYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 175

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           QM                                   +E G  PD  T+ +L+ GL    
Sbjct: 176 QM-----------------------------------VEMGYKPDTVTFNTLIHGLFLHN 200

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579
               A  + ++ V            T +  LC+RG   +A  LL+ +    G  +++V++
Sbjct: 201 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEANVVI 258

Query: 580 LKSLADA 586
             ++ D 
Sbjct: 259 YNTIIDG 265


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 183/408 (44%), Gaps = 7/408 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A +   G   +A+++FDEM+ R V  + I +   I    +   L    S+ D++  
Sbjct: 200 NVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVC 259

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + +   ++   +++ G C+  R+ E   +LDE+  ++  PD   Y I+ +     G  
Sbjct: 260 --HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 317

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                +  K  K GV     DY   IL  GL  + ++  A+E+ + +V+        + N
Sbjct: 318 KAMLSLFGKSLKNGVT--IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 375

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   + +   A   F  M  +   P   T + L   LCK  +     ++   +  N
Sbjct: 376 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 435

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +E++N ++     +G+L + + V+ EM+  GL P+V  Y S++ A C+   +  A
Sbjct: 436 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 495

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D MF      N + YN +I  + E G  + A  L   M   G++P   TY  L++G
Sbjct: 496 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 555

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           LC ++ +  A E+ N   NH ++      +T + + C RG+   A  L
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 603



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 195/461 (42%), Gaps = 14/461 (3%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFT-----------HSPLSYHSILKSLSLSRQ 99
           +  R + P  +T++++  G       +  F+            + ++Y+ +L  L  + +
Sbjct: 222 MTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGR 281

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           +    ++L ++   K+  D   Y  +   L +  +++   S+F +   N   IG   C+ 
Sbjct: 282 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSI 341

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L  DG +  A ++   + + G+  + + +   I  +C+  +L    S   +++ R 
Sbjct: 342 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 401

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    +    +I+G CK +R+  A  +L E++     P    +  + + +   G + +
Sbjct: 402 --IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 459

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +VL + ++ G+ P    Y   +       +I EA  + + +       +  V NA+I 
Sbjct: 460 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 519

Query: 340 SVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +     P   A +    M   G  P++ T + L K LC +++  E  E+   LS +    
Sbjct: 520 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 579

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SYN ++S  C  G + +A  + Q M + G+   V  Y+ L+        L   + L+
Sbjct: 580 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLY 639

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M  +    +   +NI++  +S+ G    A  L   ML+K
Sbjct: 640 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 680



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/445 (20%), Positives = 180/445 (40%), Gaps = 7/445 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            Y  +I   I+G + +  FS+ +++   C  + P     N LL+ L   G +     + D
Sbjct: 233 TYNTMIDGHIKGGDLEAGFSLRDQMV--CHGLKPNAITYNVLLSGLCRAGRMGETSALLD 290

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM+ + +      + +       N     +LS+  +  K  N +  G     ++++G CK
Sbjct: 291 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLK--NGVTIGDYTCSILLNGLCK 348

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +V  A +VL  L      P  + Y  +   +   G +        + +   + P    
Sbjct: 349 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 408

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   I GL    RI  A++L   +         +  N LI +           +  + M 
Sbjct: 409 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E G  P + +  ++    CK  K  E V +   +   D   + + YN ++      G   
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+ ++++MK  G+ P +  YN L++  C +  +  A+++ + +       +  +YN LI
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           S     G I+ AL L   M + G+     TY  L+ GL     L     ++ K + ++V+
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVV 648

Query: 538 LARSILSTFMISLCRRGHFLVATKL 562
            + +I +  + +  + G+ + A  L
Sbjct: 649 PSNAIHNIMVEAYSKYGNEIKAEDL 673



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYNV+++ +  +GR  +A  V  EM  + + P+   YN++++   +   L     L DQM
Sbjct: 198 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM 257

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N  TYN+L+S     G +     L   M  + + PD  TY+ L +GL +  + 
Sbjct: 258 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 317

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +A   +F KS+ + V +     S  +  LC+ G   +A ++L+ L
Sbjct: 318 KAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 362



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 4/154 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG-NLKTYN 474
           +R A+G++      G  PD   +N  ++AC     L  A  +  +M   G    N  +YN
Sbjct: 144 VRRAFGILAS---AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 200

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ++I+     G    A+ +F  M E+ V P+  TY ++++G  +  +L+A F + ++ V H
Sbjct: 201 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCH 260

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +       +  +  LCR G     + LL  ++S
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS 294


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 137/566 (24%), Positives = 229/566 (40%), Gaps = 66/566 (11%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH------ 82
           KW P  E+ L  L L+  +   LV  V+   +    ++ + FF WA ++ NF H      
Sbjct: 44  KWGPDAEKALEVLKLK--VDHRLVREVLK--IDVEINVKIQFFKWAGKRRNFEHDLTTYM 99

Query: 83  ------------------------------SPLSYHSILKSLSLSRQINAIDSVLKQVKV 112
                                          P     ++K L  ++ +N   SV  Q+K 
Sbjct: 100 PLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKS 159

Query: 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYI 170
            K    +S Y  +I  L+Q  + +K   +++E+  N  D  P+    + L++     G  
Sbjct: 160 RKCKPTASTYNSMILMLMQEGHHEKIHELYHEM-CNEGDCFPDTMTYSVLVSAFVKLGRD 218

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFI---WKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           D A+++FDEM   G+  +   +   +   +K  +   LG V  M D+          G  
Sbjct: 219 DYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQEMKDK----------GCA 268

Query: 228 IAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             V     +I G  K  RVE+A+ V   +    CKPD +    +   F   G + +   +
Sbjct: 269 PTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKL 328

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERR-ICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
             + R L  AP    Y   I  L   +    EA    E + +   T      + LI G  
Sbjct: 329 FDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFC 388

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +     A++    M EKG  P  +   +L   L K  + +   E++  L  N   +   
Sbjct: 389 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSAR 448

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y VM+  L   GR  EA  +  EMK+ G +PDV  YN+LM    R  ++  A      M
Sbjct: 449 IYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +GC+ +L ++NI+++  +  G  E A  +F  M +  + PDA +Y ++L  L +    
Sbjct: 509 EENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMF 568

Query: 522 QAAF----EVFNKSVNHDVMLARSIL 543
           + A     E+ ++   +D +   SIL
Sbjct: 569 EEAAKLMREMGSRGFEYDHITYSSIL 594


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/557 (22%), Positives = 241/557 (43%), Gaps = 48/557 (8%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW    E+ +  L L+  +   LV +V++  +       + FF WA ++ +F H   +Y 
Sbjct: 73  KWGSDAEKAIEVLKLK--VDHRLVHQVLD--IDVEIRAKIQFFKWAGKRQHFQHDSTTYM 128

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           ++++ L  S  ++ +   ++ +  +  ++  + +  I+  L + K   KA SVF ++K  
Sbjct: 129 ALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGR 188

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQ 207
             +    + N+L+ +L  +G+ +   ++++E+   G     TI +   I  F +  +   
Sbjct: 189 KCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDF 248

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              + DE++  EN +     I   I+  + K  +VE A ++++E++ + C P    Y  +
Sbjct: 249 AFRLFDEMK--ENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTEL 306

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            +    +G V +   +     K G  P        I  L    R+ +A +L   + S + 
Sbjct: 307 IKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQC 366

Query: 328 TIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---- 381
             +    N +I ++  S      A ++F  M   G  P+  T + L    CK N+     
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKAL 426

Query: 382 ----------------------DELVEVYKVLSANDYFTDMES---------YNVMVSFL 410
                                 D L    +  +AN+ F +++          Y VM+   
Sbjct: 427 LLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              GRL +A  +  EMK+ G  PDV  YN+LM    R  ++  A  L   M  +GC+ ++
Sbjct: 487 GNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDI 546

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN- 529
           K++NI+++  ++ G  + A+ +F  M E  + PDA +Y ++L  L +    + A ++   
Sbjct: 547 KSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606

Query: 530 ---KSVNHDVMLARSIL 543
              K   +D +   SIL
Sbjct: 607 MKLKGFEYDSITYSSIL 623


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 188/414 (45%), Gaps = 15/414 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  +  +G +  AL   D +   G     + +   I   C   K+G+  + L  ++K
Sbjct: 133 NTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLC---KIGETRAALQMLKK 189

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E  ++N  V+   +II+  CK K V +A+++  E+  +   PD + +  +   F ++G 
Sbjct: 190 IEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQ 249

Query: 277 VFE-----REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
           + E      E+VLK      + P    +   +  L  +  I  AK +  V++      D 
Sbjct: 250 LKEAFGLFHEMVLKN-----INPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDV 304

Query: 332 DVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              ++L+     ++    A   F+ M   G  P   + + +   L K    DE + ++K 
Sbjct: 305 VTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKE 364

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +       D  +YN ++  LC  GR+  A+ ++ EM   G+  D+  YNSL++  C+   
Sbjct: 365 MCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHH 424

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A  L  ++   G   ++ TYNILI    + G ++ A  +F ++L KG + +A TY  
Sbjct: 425 IDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNI 484

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           ++ GLC+E     A  + +K  N+ ++       T + +L R+     A KLLR
Sbjct: 485 MINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLR 538



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/521 (21%), Positives = 221/521 (42%), Gaps = 51/521 (9%)

Query: 1   MTMRPATDLA--TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVAR--VI 56
           + MRP   +    +I  +I+ A+N       +T  +  + HQL L+  ++P++V    ++
Sbjct: 49  LRMRPTPSIVEFNKILGSIVKANNN-----HYTTAISLS-HQLELK-GITPTIVTFNILV 101

Query: 57  NPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           N Y  L   + A   F     +  +  + +++++++  + L+ ++         V     
Sbjct: 102 NCYCHLGEMTFAFSIF-AKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGF 160

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
            LD   YR +I  L +   T+ A  +  +++    +    + N ++  L  D  + +A +
Sbjct: 161 HLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQ 220

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIH 234
           ++ EM  + +    + F   I  FC   +L +   +  E+  +    IN  V    +++ 
Sbjct: 221 LYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKN---INPDVYTFSILVD 277

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             CK   +  A  +L  +  +   PD + Y  + + + L+  V + + V     +LGVAP
Sbjct: 278 ALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAP 337

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
             + Y   I GL                                G +  +D   A+  F 
Sbjct: 338 HAHSYNIMINGL--------------------------------GKIKMVD--EALSLFK 363

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M  KG  P   T ++L   LCK  +     ++   +  N    D+ +YN ++  LC + 
Sbjct: 364 EMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNH 423

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            + +A  +++++K +G+ P +  YN L++  C+   L+ A+ ++  +   G S N  TYN
Sbjct: 424 HIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYN 483

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           I+I+   + G    A  L   M   G+ PDA TY +++  L
Sbjct: 484 IMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRAL 524



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 44/360 (12%)

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +  +L ++   P  + + I+   +  +G +     +  K  KLG  P T  +   I 
Sbjct: 78  AISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLIN 137

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G+ +  ++ EA    + +++  F +D      LI  +  I    A +     IE   V T
Sbjct: 138 GICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNT 197

Query: 365 LSTLSNLSKN-LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              + N+  N LCK     +  ++Y  +       D+ ++N ++   C  G+L+EA+G+ 
Sbjct: 198 DVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLF 257

Query: 424 QEM-----------------------------------KRKGLDPDVSFYNSLMEACCRE 448
            EM                                    ++G+ PDV  Y+SLM+  C  
Sbjct: 258 HEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLV 317

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
           + +  AK ++  M   G + +  +YNI+I+   ++  ++ AL LF  M  KG+APD  TY
Sbjct: 318 NEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTY 377

Query: 509 TSLLEGLCQETNLQAAF----EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            SL++GLC+   +  A+    E+ N  +  D++   S++      LC+  H   A  L++
Sbjct: 378 NSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV----LCKNHHIDKAIALVK 433



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 168/405 (41%), Gaps = 3/405 (0%)

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           V A++ +   A+ +  ++  +G+  + + F + +  +C   ++    S+  ++ K     
Sbjct: 68  VKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYH- 126

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              ++    +I+G C   +++EA    D +       D ++YR +      +G       
Sbjct: 127 -PTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQ 185

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +LKK     V      Y   I  L  ++ + +A +L   +++ + + D    N+LI    
Sbjct: 186 MLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFC 245

Query: 343 SIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            +   + A   F+ M+ K   P + T S L   LCK         +  V+       D+ 
Sbjct: 246 VVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVV 305

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y+ ++   C    + +A  V   M R G+ P    YN ++    +  ++  A  L+ +M
Sbjct: 306 TYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEM 365

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G + +  TYN LI    ++G I  A +L   M   G+  D  TY SL++ LC+  ++
Sbjct: 366 CCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHI 425

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
             A  +  K  +  +  +    +  +  LC+ G    A  + + L
Sbjct: 426 DKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDL 470



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 424 QEMKRKGLDPDVSFYNSLMEACCR--EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
             M R    P +  +N ++ +  +   +    A  L  Q+   G +  + T+NIL++ + 
Sbjct: 46  HRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYC 105

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
            +GE+  A  +F  +L+ G  P   T+ +L+ G+C    L+ A    +  +     L + 
Sbjct: 106 HLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQV 165

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIE 594
              T +  LC+ G    A ++L+ +   L ++D   + I++ SL   + V  A +
Sbjct: 166 SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQ 220


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 212/483 (43%), Gaps = 41/483 (8%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKV--NKITLDSSV-YRFIIPSLIQGKNTQKAF 139
           SP S   +LK +  +R+ N++  +  ++ +  +++   S++ + F++    Q +   +A 
Sbjct: 118 SPKSVTQLLKEVVSTRK-NSVRDLFDELVLAHDRLQTKSTILFDFMVRFYCQLRMVDEAI 176

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
             F  +K    D   E CN +L++L+    I+NA   + +M    ++ +   F + I   
Sbjct: 177 ECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVL 236

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C+  KL +    L  +   E+  I  +++    ++ G+    R+E A  ++ E++ +  +
Sbjct: 237 CKEGKLKKAKGFLGIM---ESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQ 293

Query: 259 PDFIAYRI-------------VAEEFKLMGSV------------------FEREVVLKKK 287
           PD   Y               V  E K +G V                   E     + +
Sbjct: 294 PDLQTYNPILSWMCNEGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDE 353

Query: 288 R-KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
             K G+ P    Y   I GL +E +I  A+ L   I      +D    N +I G     D
Sbjct: 354 MVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGD 413

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            + A    + M+  G  PT  T ++L   LC+RNK+ E  E+++ +       D+   N 
Sbjct: 414 AKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNT 473

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++   C +G +  A+ +++EM R  +DPD   YN LM   C E     A++L  +M   G
Sbjct: 474 LMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRG 533

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +  +YN LIS +S+ G+ + A  +   ML  G  P   TY +LL+GL +  + + A 
Sbjct: 534 IKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAE 593

Query: 526 EVF 528
           E+ 
Sbjct: 594 ELL 596


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 226/510 (44%), Gaps = 43/510 (8%)

Query: 49  PSLVARVI------NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           PSL  R +      NP  L H S+   FF + S QP F  +  +Y  + + L++      
Sbjct: 78  PSLSVRHVVDLINRNPLSLPHRSI-FAFFKFISSQPEFRFTVETYFVMARFLAIHEMFVE 136

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--- 157
             S+++ V V++   +S+   FI  SL++ + T     + + +     D+G  P++    
Sbjct: 137 AQSLIELV-VSRKGKNSASSVFI--SLVEMRGTPMCDFLVDALMITYMDLGFIPDVIQCF 193

Query: 158 ------NSLLAVLASDGYIDNALKM---------FDEMSHRGVEFSTIGFGVFIWKFCEN 202
                 N ++ +      +D  +K+         + E+   G   +   F + + KFC+ 
Sbjct: 194 RLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKE 253

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             +     + DE+ KR    +  +V++   +I+G+CK   ++  F++   +     +PD 
Sbjct: 254 GNICDAQKVFDEITKRS---LRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDV 310

Query: 262 IAY----RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
             Y      + +E K+ G+      +  +  + G+ P    +   I G     +I   KE
Sbjct: 311 FTYSALINALCKENKMDGA----HRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKE 366

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             + ++S     D  + N L+ G   + D  +A    + MI +G  P   T + L    C
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFC 426

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +    D  +E+ K +  N    D   ++ ++  +C  GR+ +A   ++EM R G+ PD  
Sbjct: 427 RGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDV 486

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y  +M+A C++   +   KL  +M + G   N+ TYN+L++   ++G+++ A  L   M
Sbjct: 487 TYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAM 546

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           L  GV PD  TY +LLEG  +  N    ++
Sbjct: 547 LNVGVVPDDITYNTLLEGHHRHANASKHYK 576



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 104/212 (49%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ + ++   PT+ + + L    CK    D    +   +  +    D+ +Y+ +++ LC 
Sbjct: 263 FDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCK 322

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             ++  A+ +  EM  +GL P+   + +L+    R   +   K+ + +M + G   ++  
Sbjct: 323 ENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVL 382

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L++ F + G++  A  +   M+ +G+ PD  TYT+L++G C+  ++  A E+  +  
Sbjct: 383 YNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMD 442

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            + + L R   S  +  +C+ G  + A + LR
Sbjct: 443 QNGIELDRVGFSALICGMCKEGRVIDAERALR 474



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 111/240 (46%), Gaps = 8/240 (3%)

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
            NL   + K N +  +   Y  +    +  ++  +N++++  C  G + +A  V  E+ +
Sbjct: 209 GNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITK 268

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           + L P V  +N+L+   C+   L    +L   M  S    ++ TY+ LI+   +  +++G
Sbjct: 269 RSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDG 328

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A RLF+ M E+G+ P+   +T+L+ G  +   +    E + K ++  +     + +T + 
Sbjct: 329 AHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVN 388

Query: 549 SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
             C+ G  + A  ++     RGL  D     ++  L+       +V+ A+E  K + ++ 
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPD---KVTYTTLIDGFCRGGDVDTALEIRKEMDQNG 445


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 212/473 (44%), Gaps = 19/473 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++ S  +G   Q+   + +E++           N L+  L+  G  + A  +  EM 
Sbjct: 237 YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEML 296

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             G++ S   +   I+ +     L + LS+ +E+  +  S    +  +   I+G CK  R
Sbjct: 297 KTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNS--FIYGLCKLGR 354

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           + +A + L ++      PD ++Y  +   +  +G++ +  ++  + R + + P    Y  
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNT 414

Query: 302 FILGLIVERRICEAKELG-EVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMI 357
            + GL  +  +  A++L  E+I  G   I  D++   I   GS        A  FF+ M+
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEG---IAPDIVTYTILVNGSCKMGSLSMAQEFFDEML 471

Query: 358 EKG-RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            +G  + + +  + +   L K   +     + + + A  +  D+  YNV+V  LC  G L
Sbjct: 472 HEGLELDSYAYATRIVGEL-KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  ++Q+M   G+ PD   Y S++ A      LR  ++++ +M + G + ++ TY +L
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I   +  G +E A   F  M EKG+ P+  TY SL+ GLC+   +  A+  F + V   +
Sbjct: 591 IHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
              +   +  +   C  G++  A  L      RG+  D   S +H  LLK L 
Sbjct: 651 FPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD---SCTHSALLKQLG 700



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/479 (21%), Positives = 203/479 (42%), Gaps = 44/479 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L S     ++     +L +++      +   Y  +I  L +    ++A  +  E
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N L+    + G +  AL + +EM  +G   +   +  FI+  C+  +
Sbjct: 295 MLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +   +  L ++    N+++   V    +I+G+C+   + +AF + DELR     P  + Y
Sbjct: 355 MSDAMQQLSDMLA--NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTY 412

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEV 321
             + +     G   E EV  + K ++   G+AP    Y   + G      +  A+E  + 
Sbjct: 413 NTLLDGLCRQG---ELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 322 IVSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++     +D       ++G +   D   A      M+ KG  P L   + +   LCK   
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 381 SDELVEVYKVLSAN----DYFT-------------------------------DMESYNV 405
            +E  E+ + + ++    DY T                                + +Y V
Sbjct: 530 LEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTV 589

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++      GRL  A+    EM+ KG+ P+V  YNSL+   C+   +  A   + +M   G
Sbjct: 590 LIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKG 649

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
              N  +Y ILI++   +G  + AL L+  ML++GV PD+ T+++LL+ L ++  LQA 
Sbjct: 650 IFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 103/214 (48%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  +  M E G  PT+ T + L  + CK  K  + +++   +       +  +YNV+++
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G   +A G+I EM + GL      YN L+     + +L  A  L ++M   G S 
Sbjct: 278 GLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASP 337

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + TYN  I    ++G +  A++   +ML   + PD  +Y +L+ G C+  NL  AF +F
Sbjct: 338 TVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLF 397

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           ++  +  +       +T +  LCR+G   VA +L
Sbjct: 398 DELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 180/411 (43%), Gaps = 20/411 (4%)

Query: 62  THHSLALGFFNWA------SQQPNFT---HSPL--SYHSILKSL-SLSRQINAIDSVLKQ 109
           T++ L  G+FN        S Q        SP   +Y+S +  L  L R  +A+   L  
Sbjct: 306 TYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQ-LSD 364

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASD 167
           +  N +  D   Y  +I    +  N  KAF +F+E++     + P I   N+LL  L   
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR--SIYLFPTIVTYNTLLDGLCRQ 422

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G ++ A ++  EM + G+    + + + +   C+   L       DE+   E   ++   
Sbjct: 423 GELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEML-HEGLELDSYA 481

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            A  I+ G  K      AF + +E+  +   PD I Y +V +    +G++ E   +L+K 
Sbjct: 482 YATRIV-GELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKM 540

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
              GV P    Y   I   +   R+ + +E+   ++S   T        LI G       
Sbjct: 541 VSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL 600

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A ++F+ M EKG +P + T ++L   LCK  + D+    +  +     F +  SY ++
Sbjct: 601 ERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTIL 660

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           ++  C  G  +EA  + ++M  +G+ PD   +++L++   ++  L+  ++L
Sbjct: 661 INENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ MI+    P +   + + + L  ++   + VEVY+ +        + +YN ++   C 
Sbjct: 187 FDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCK 246

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G++++   ++ EM+R+G  P+   YN L+    ++     AK L  +M  +G   +  T
Sbjct: 247 GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  +   G +  AL L   M+ KG +P   TY S + GLC+   +  A +  +  +
Sbjct: 307 YNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDML 366

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++++      +T +   CR G+ + A  L   L S
Sbjct: 367 ANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRS 402



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K++  ++ + V+  +  +    D+++ N ++  L     + +A  V + M   G+ P + 
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIV 235

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+L+++ C+   ++    L  +M   GC+ N  TYN+LI+  S+ GE E A  L   M
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           L+ G+   A TY  L+ G   +  L  A  +  + V        +  ++F+  LC+ G
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLG 353


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/511 (21%), Positives = 214/511 (41%), Gaps = 48/511 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +++ L    +I    +VL ++          +Y  II S  +      A  V   +
Sbjct: 118 TYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEAL 177

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                 +    CN ++  +   G +D  L+M  ++   G E   + +   +   C   + 
Sbjct: 178 HAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRW 237

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           G V  ++DE+ K                        V EA   L ++    C PD   Y 
Sbjct: 238 GDVEELMDEMVK------------------------VHEA---LSQMAQHGCTPDIRMYA 270

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +     G       +L +    G+ P    Y   + G+    R  +A+EL   +   
Sbjct: 271 TIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQK 330

Query: 326 KFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
              +DD   N L+      G V  +     I     M+E G +P + T + +    CK  
Sbjct: 331 NCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLEHGCMPDVITYTTVINGFCKEG 385

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE V + K + +     +  SY +++  LC++ R  +A  ++  M ++G  P+   +N
Sbjct: 386 LIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFN 445

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   C++ L+  A +L  QM  +GC+ +L +Y+ +I    + G+ E AL L + M+ K
Sbjct: 446 TIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINK 505

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTFMISLCRRGH 555
           G+ P+  TY+S+   L +E  +    ++F+     ++  D +L  +++S    SLC+R  
Sbjct: 506 GITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVIS----SLCKRRE 561

Query: 556 FLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
             +A   L  + S+  + +  ++  L+K LA
Sbjct: 562 TDLAIDFLAYMVSNGCMPNESTYTALIKGLA 592



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 161/367 (43%), Gaps = 36/367 (9%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           +  +G+ + A ++   M   G++ + + +   +   C   +  +   +L E+ ++   + 
Sbjct: 276 ICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLD 335

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
           +  V   +++  FC+   V+   ++L+++    C PD I Y  V   F   G + E  ++
Sbjct: 336 D--VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVML 393

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           LK     G  P T  Y   + GL    R  +A+EL                         
Sbjct: 394 LKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEEL------------------------- 428

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                     + MI++G +P   T + +   LCK+   ++ +E+ K +  N    D+ SY
Sbjct: 429 ---------MSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISY 479

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++  L  +G+  EA  ++  M  KG+ P+V  Y+S+  A  RE  +    +++D +  
Sbjct: 480 STVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQD 539

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +    +   YN +IS   +  E + A+     M+  G  P+ +TYT+L++GL  E  L  
Sbjct: 540 ATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCE 599

Query: 524 AFEVFNK 530
           A ++ ++
Sbjct: 600 AQDLLSE 606



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 93/211 (44%), Gaps = 10/211 (4%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T   + + LC R +  + + V   +++         Y+V++   C SG    A  V
Sbjct: 114 PNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRV 173

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI----- 477
           ++ +  KG   D    N ++ A C +  +    ++  ++   GC  ++ +YN ++     
Sbjct: 174 LEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCA 233

Query: 478 -SKFSEVGEIEGALRLFH----NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
             ++ +V E+   +   H     M + G  PD   Y ++++G+C+E + + A E+ ++  
Sbjct: 234 AKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMP 293

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++ +       +T +  +C    +  A +LL
Sbjct: 294 SYGLKPNVVCYNTVLKGICSADRWEKAEELL 324



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A+G +  +  YN +++ +  VG++E A RL   +    V P+A TY  ++ GLC    + 
Sbjct: 77  AAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAV---PVPPNAYTYFPVVRGLCGRGRIA 133

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHV 577
            A  V ++  +   +    +    + S CR G +  A ++L     +G + D G+ +   
Sbjct: 134 DALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCN--- 190

Query: 578 ILLKSLADAREVEMAIEHIK 597
           +++ ++ D   V+  +E ++
Sbjct: 191 LVINAICDQGCVDEGLEMLR 210


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 211/478 (44%), Gaps = 65/478 (13%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYI----DNALKMFD 178
           I+ SL++ K+     S+  +++F    I P +  CN L+      G I      A    D
Sbjct: 92  ILGSLVKSKHYHTVLSLSQKMEF--RGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHD 149

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFC 237
           ++   G     + +G  I   C   K+G+  + LD +++ +  ++   +V+   +I+G C
Sbjct: 150 KLVALGFHLDQVSYGTLIHGLC---KVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMC 206

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K K V +AF +  E+  +   P+ + Y  +   F ++G + +   +  K     + P   
Sbjct: 207 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGY 266

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            +   + G   +R++ E K +                                  F  M+
Sbjct: 267 TFNILVDGFCKDRKMKEGKTV----------------------------------FAMMM 292

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G +P + T ++L    C   + +    ++  ++      D+ SYN++++  C   ++ 
Sbjct: 293 KQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVD 352

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +  EM  K + P+V  YNSL++   +   +  A +L DQM   G   N+ TYN +I
Sbjct: 353 KAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSII 412

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-HDV 536
               +  +++ A+ L     ++G+ P   TYT L++GLC+        E ++ +VN ++V
Sbjct: 413 DALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK-------VEGYDITVNTYNV 465

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
           M+            C++G F  A  LL  +  SS + ++ ++ I ++SL D  E + A
Sbjct: 466 MIH---------GFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKA 514



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/312 (19%), Positives = 131/312 (41%), Gaps = 47/312 (15%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDS--LSPSLVARVINPYLL 61
           R A DL  R+   ++  +     A  +  ++        + D+  L   +V++ I+P ++
Sbjct: 177 RAALDLLQRVDGKLVQLN-----AVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVV 231

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
           T+ +L  GFF                        + +  +AID +  ++ +  I  D   
Sbjct: 232 TYSALISGFF-----------------------VVGKLKDAID-LFNKIILENIKPDGYT 267

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGY-----IDNAL 174
           +  ++    + +  ++  +VF  +    + I P++   NSL+     DGY     ++ A 
Sbjct: 268 FNILVDGFCKDRKMKEGKTVFAMMM--KQGIIPDVVTYNSLM-----DGYCLVKEVNTAK 320

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            +F+ M+  GV      + + I  FC+  K+ + +++ +E+  +  ++I   V    +I 
Sbjct: 321 SIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCK--NIIPNVVTYNSLID 378

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G  K  R+  A +++D++  R   P+ + Y  + +       V +   ++ K +  G+ P
Sbjct: 379 GLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 438

Query: 295 RTNDYREFILGL 306
               Y   I GL
Sbjct: 439 SMYTYTILIDGL 450


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/523 (22%), Positives = 225/523 (43%), Gaps = 38/523 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++     + Q+ A   +   V V     ++  Y  I+ SL        A +V +E
Sbjct: 77  VAYNAMIAGYCRAGQVAAARRLAAAVPVPP---NAYTYFPIVRSLCARGLIADALTVLDE 133

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +        P +C+ +L      G   +A++    +  +G    +    + +   CE   
Sbjct: 134 MPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGC 193

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL-RIRE------ 256
           + + + +L   RK  +      +++   ++ G C  KR ++  +++ E+ R+ E      
Sbjct: 194 VDEGVELL---RKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMP 250

Query: 257 ---CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C PD   Y  + +     G       +L +    G+ P    Y   + GL    R  
Sbjct: 251 EHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWE 310

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI------GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           EA++L   +      +DD   N L+      G V  +     I     M+E G +P + T
Sbjct: 311 EAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRV-----IELLEQMLEHGCIPDVIT 365

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + +    CK    DE V + K +SA     +  SY +++  LC + R  +A  +I  M 
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 425

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           ++G  P+   +N+L+   C++ L   A +L  QM  +GCS +L +Y+ +I    + G+ E
Sbjct: 426 QQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSIL 543
            AL L + M+ KG+ P+   Y+S+   L +E       ++F+     +V  D  L  +++
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 544 STFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
           S    SLC+R     A      + S+  + +  ++ IL++ LA
Sbjct: 546 S----SLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLA 584



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/465 (21%), Positives = 193/465 (41%), Gaps = 83/465 (17%)

Query: 78  PNFTHSP--LSYHSILKSLSLSRQINAIDSV----------LKQVKVNKITLDSSVYRFI 125
           P+F   P  +SY+++LK L ++++ + ++ +          L Q+  +  T D  +Y  I
Sbjct: 205 PSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATI 264

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I  +                   C+D   E+ N +L+                 M   G+
Sbjct: 265 IDGI-------------------CKDGHHEVANDILS----------------RMPSYGL 289

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           + + + +   +   C   +  +   +L E+ + +  + +  V   +++  FC+   V+  
Sbjct: 290 KPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD--VTFNILVDFFCQNGLVDRV 347

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            ++L+++    C PD I Y  V   F   G V E  ++LK     G  P T  Y   + G
Sbjct: 348 IELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKG 407

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L    R  +A+EL                                   + MI++G +P  
Sbjct: 408 LCRAERWVDAQEL----------------------------------ISHMIQQGCLPNP 433

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L   +CK+  +++ +E+ K +  N    D+ SY+ ++  L  +G+  EA  ++  
Sbjct: 434 VTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 493

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG+ P+   Y+S+  A  RE       +++D +  +    +   YN +IS   +  E
Sbjct: 494 MINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWE 553

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            + A+  F  M+  G  P+ +TYT L+ GL  E  ++ A ++ ++
Sbjct: 554 TDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSE 598


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/514 (21%), Positives = 224/514 (43%), Gaps = 55/514 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL FF+   +    T S  S++ +L  L+  +  + + S+  Q++++ ++ D      ++
Sbjct: 53  ALHFFHLMMRSTP-TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILL 111

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
             L      ++ F+ F  +        P I   N+L+  L  +  I  A ++F  M   G
Sbjct: 112 NCLCNVNRLREGFAAFAGILR--RGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG 169

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLS----MLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
                + +G  I   C    +   L     ML+++ + E +     +   +I+ G CK  
Sbjct: 170 CTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229

Query: 241 RVEEAFKVLDELRIRE----------CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           R +EA ++ +E++ +            +PD + + ++ +     G V E + +L    + 
Sbjct: 230 REDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES 289

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSA 349
           G+ P    Y   I G  +   +  A+EL   + S     D    N LI   S ++    A
Sbjct: 290 GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEA 349

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKN----------------------------------- 374
           +  +N M+  G+ P + T  +L K                                    
Sbjct: 350 MKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDG 409

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK +   E ++++  L ++++  ++E+ N ++  LC +G+L  A+ + +++  +G +P+
Sbjct: 410 LCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPN 469

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y  ++   CRE  +  A  L  +M A+GC+ ++ TYN L+  F E  ++E  ++L H
Sbjct: 470 VVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLH 529

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            M +K V+PDA T + +++ L ++   Q    + 
Sbjct: 530 RMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 563



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 206/489 (42%), Gaps = 36/489 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ LA   +      ++++M   G+        + +   C   +L +  +    + +
Sbjct: 73  NHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILR 132

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  S     V    +I G C   R+ EA ++   ++   C PD + Y  + +     G++
Sbjct: 133 RGYS--PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNI 190

Query: 278 -----FEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
                  +E++    R ++   P    Y   + GL    R  EAK+L E           
Sbjct: 191 NIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE----------- 239

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                        + ++  +  N M+++G  P + T + L   LCK  K  E  ++  V+
Sbjct: 240 -------------EMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 286

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             +    D+ +YN ++   C  G L  A  +   M  KG +PDV  YN L+    +   +
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 346

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A KL+++M   G   N+ TY+ L+      G+++ A +LF  M   G+A ++ TY   
Sbjct: 347 EEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 406

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           L+GLC+   L  A ++F +  + +  L    L+  +  LC+ G    A +L   LS++ G
Sbjct: 407 LDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE-G 465

Query: 572 HSD---SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628
           H     ++ I++       +V+ A   I+ ++ +  T        L      S+  E ++
Sbjct: 466 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVV 525

Query: 629 LLLHALQEK 637
            LLH + +K
Sbjct: 526 QLLHRMAQK 534


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/511 (21%), Positives = 222/511 (43%), Gaps = 25/511 (4%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR-- 123
           L L FF W+ ++   ++       +L  L+ S++ + + S L     N+    SSV+   
Sbjct: 60  LVLRFFKWSQKEYRLSYGLEPTSKVLHFLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSL 119

Query: 124 ---------------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
                           ++ + ++      A+  F   K     +    CN LL+ L  + 
Sbjct: 120 LLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKEN 179

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            I +   ++ EM  R +  +   F +FI   C   KL +    +++++      I+ +V+
Sbjct: 180 KIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG---ISPNVV 236

Query: 229 AV-LIIHGFCKGKRVEEAFKV---LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
               ++ G+CK     + +K    + E+   +  P+ + +  + + F    +V   +   
Sbjct: 237 TYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAF 296

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
           ++ +K G+ P    Y   I GL    ++ EA +L + +V      +    NALI G    
Sbjct: 297 EEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKK 356

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
              + A   F+ + ++  VP + T + +    CK    +E   +   +       ++ +Y
Sbjct: 357 KMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTY 416

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++ LC    L+ A  ++ EM+ KGL  DV  YN L++  C+ D  R A+KL ++MF 
Sbjct: 417 NCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFN 476

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N  TYN L+  +   G+++ AL +   M ++   P+  TY  L++G C+   L+A
Sbjct: 477 LGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEA 536

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           A  + N+ +   +   R+      + +  +G
Sbjct: 537 ANGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 9/303 (2%)

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-- 338
           E V K+  K  +    N +  FI GL    ++ +A++  E + +   + +    N L+  
Sbjct: 185 EYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDG 244

Query: 339 ----GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
               GS   +    A  F   M+     P   T + L    CK        + ++ +   
Sbjct: 245 YCKRGSAGKM--YKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ 302

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN +++ LC +G+L EA  +  +M   GL P++  YN+L+   C++ +++ A
Sbjct: 303 GLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEA 362

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            K++D +       N+ T+N +I  + + G +E    L  +ML++G+ P+ +TY  L+ G
Sbjct: 363 TKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAG 422

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC++ +LQAA E+ N+  N  +       +  +  LC+      A KLL  +  +LG   
Sbjct: 423 LCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEM-FNLGLKP 481

Query: 575 SHV 577
           +HV
Sbjct: 482 NHV 484


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/483 (22%), Positives = 213/483 (44%), Gaps = 21/483 (4%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H+P  + ++ IL S +  +  +   S+  ++++  I  D      +I            F
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++            N+L+  L   G +  AL   D++  +G + + + +G  I   
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGV 174

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C   K+G   + +  ++K +  +   +V+    II   CK + V EA+ +  E+ ++   
Sbjct: 175 C---KIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 231

Query: 259 PDFIAYRIVAEEFKLMGSVFE-----REVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            D + Y  +   F + G + E      E+VLK      + P    Y   +  L  E ++ 
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT-----INPNVYTYNILVDALCKEGKVK 286

Query: 314 EAKELGEVIVSGKFTIDDDVLNA---LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           EAK +  V++  K  +  DV+     + G     + + A   FN M   G  P + T + 
Sbjct: 287 EAKSVLAVML--KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 344

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L    CK    DE + ++K +   +    + +Y+ ++  LC SGR+   + +I EM  +G
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRG 404

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
              +V  Y+SL++  C+   L  A  L+++M   G   N  T+ IL+    + G ++ A 
Sbjct: 405 QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 464

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            +F ++L KG   +  TY  +++G C++  L+ A  + +K  ++  +         +I+L
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIAL 524

Query: 551 CRR 553
            ++
Sbjct: 525 FKK 527



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 163/356 (45%), Gaps = 3/356 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+  F K K    A  +   L ++  +PD I   I+   F  MG +     VL K  K G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T      I GL ++ ++ +A    + +++  F ++      LI  V  I D R+AI
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAI 184

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                +  +   P +   S +   LCK     E   ++  ++      D+ +Y+ ++   
Sbjct: 185 KLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+L+EA G++ EM  K ++P+V  YN L++A C+E  ++ AK +   M  +    ++
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  V E++ A  +F+ M   GV PD  TYT L+ G C+   +  A  +F +
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
               +++      S+ +  LC+ G       L+  +  D G   ++VI   SL D 
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-HDRGQP-ANVITYSSLIDG 418



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 240  KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            K    A  +   L ++  +PD     I+   F  MG +     +L K  K G  P T  +
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 300  REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIE 358
               I GL ++ ++ +A    + +++  F ++      LI  V  I D R+AI     +  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDG 1059

Query: 359  KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            +   P +   + +   LCK     +   ++  ++      D+ +YN ++   C  G+L+E
Sbjct: 1060 RLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKE 1119

Query: 419  AYGVIQEMKRKGLDPDVSFYNSLMEACCRE--DLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            A G++ +M  K ++P+V  YN L++A C+E  DLL  +  +  +M  +GC  N  T+ I+
Sbjct: 1120 AIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEII 1179

Query: 477  ISKFSEVGEIEGALRLFHNMLEKGV 501
            IS   E  E +   +L H M+ +G+
Sbjct: 1180 ISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 173/403 (42%), Gaps = 42/403 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++ ++++K L L  Q+        ++      L+   Y  +I  + +  +T+ A  +  +
Sbjct: 130 VTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQK 189

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          + ++++  L     +  A  +F EM+ +G+    + +   I+ FC   K
Sbjct: 190 IDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC-KPDFI 262
           L + + +L+E+  +    IN +V    +++   CK  +V+EA  VL  + ++ C KPD I
Sbjct: 250 LKEAIGLLNEMVLK---TINPNVYTYNILVDALCKEGKVKEAKSVL-AVMLKACVKPDVI 305

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KEL 318
            Y  + + + L+  V + + V      +GV P  + Y   I G    + + EA    KE+
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 319 GE----------------VIVSGKFTIDDDVLNAL---------IGSVSSIDP------- 346
            +                +  SG+     D+++ +         I   S ID        
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHL 425

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             AI  FN M ++G  P   T + L   LCK  +  +  EV++ L    Y  ++ +YNVM
Sbjct: 426 DRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +   C  G L EA  ++ +M+  G  PD   +  ++ A  ++D
Sbjct: 486 IDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKD 528



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 351  VFFNF-----MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            + FNF     ++++G  P   T + L   LC + + ++ +  +  L A  +  +  SY  
Sbjct: 977  ITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGT 1036

Query: 406  MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            +++ +C  G  R A  +++++  +   PDV  YN++++A C+  L+  A  L+ +M   G
Sbjct: 1037 LINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKG 1096

Query: 466  CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             S ++ TYN LI  F  VG+++ A+ L + M+ K + P+  TY  L++ LC+E
Sbjct: 1097 ISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKE 1149



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 399  DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
            D+ + N++++  C  G++   + ++ ++ ++G  PD   + +L+   C +  +  A    
Sbjct: 960  DLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFH 1019

Query: 459  DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            D++ A G   N  +Y  LI+   ++G+   A++L   +  +   PD   Y ++++ LC+ 
Sbjct: 1020 DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKH 1079

Query: 519  TNLQAA----FEVFNKSVNHDVMLARSILSTFMI 548
              +  A    FE+  K ++ DV+   +++  F I
Sbjct: 1080 QLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 465  GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            G   +L T NILI+ F  +G+I     +   +L++G  PD  T+T+L+ GLC +  +  A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 525  FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584
                +K +     L +    T +  +C+ G    A KLLR +   L   D  V++  ++ 
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPD--VVMYNTII 1073

Query: 585  DA 586
            DA
Sbjct: 1074 DA 1075



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++++  +      A  L  ++   G   +L T NILI+ F  +G+I     +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L++G  PD  T  +L++GLC +  ++ A    +K +     L +    T +  +C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCK 176

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            G    A KLL+ +   L  +  +V++  ++ DA
Sbjct: 177 IGDTRAAIKLLQKIDGRL--TKPNVVMYSTIIDA 208



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 110/250 (44%), Gaps = 23/250 (9%)

Query: 46   SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT---------HSP--LSYHSILKSL 94
            SLS  L  + I P L T + L   F +      NF+         + P  +++ +++  L
Sbjct: 947  SLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGL 1006

Query: 95   SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
             L  Q+N       ++      L+   Y  +I  + +  +T+ A  +  ++         
Sbjct: 1007 CLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDV 1066

Query: 155  EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
             + N+++  L     +  A  +F EM+ +G+    + +   I+ FC   KL + + +L++
Sbjct: 1067 VMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNK 1126

Query: 215  VRKRENSMINGSVIAV-LIIHGFCK-GKR-VEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
            +  +    IN +V    +++   CK GK  ++E+  +L ++    CK + + + I+    
Sbjct: 1127 MVLK---TINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEII---- 1179

Query: 272  KLMGSVFERE 281
              + ++FE++
Sbjct: 1180 --ISALFEKD 1187


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 209/490 (42%), Gaps = 50/490 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     D  + + ++M    +      + + I  FC  +++   L++L ++ K
Sbjct: 89  NKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMK 148

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S++  S +    ++G+C GKR+ +A  ++D++     +PD I +  +     L  
Sbjct: 149 LGYEPSIVTLSSL----LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 204

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL        A  L   + + K   D  + N
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I S+        A+  F  M  KG  P + T S+L   LC   +  +  ++   +   
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 324

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ ++N ++      G+  EA  +  +M ++ +DPD+  YNSL+   C  D L  A
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEV------------------------------- 483
           K++++ M +  C  ++ TYN LI  F +                                
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444

Query: 484 ----GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G+ + A ++F  M+  GV PD  TY+ LL+GLC    L+ A EVF+     ++ L 
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504

Query: 540 RSILSTFMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
             I +T +  +C+ G       L  +  L+G+  ++    ++  ++  L   R ++ A  
Sbjct: 505 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV---TYNTMISGLCSKRLLQEAYA 561

Query: 595 HIKWIQESSP 604
            +K ++E  P
Sbjct: 562 LLKKMKEDGP 571



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A+ + D M  RG + + + +GV +   C+       L++L+   K E + I   V+    
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN---KMEAAKIEADVVIFNT 265

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   CK + V++A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RS 348
           + P    +   I   + E +  EA++L + ++  K +ID D+   N+L+      D    
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMI--KRSIDPDIFTYNSLVNGFCMHDRLDK 383

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F FM+ K   P + T + L K  CK  + ++  E+++ +S      D  +Y  ++ 
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G    A  V ++M   G+ PD+  Y+ L++  C    L  A +++D M  S    
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++  Y  +I    + G+++    LF ++  KGV P+  TY +++ GLC +  LQ A+ + 
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            K      +      +T + +  R G    + +L+R + S
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 213/506 (42%), Gaps = 66/506 (13%)

Query: 42  GLRDSLSPSLVARVIN----PYLLTHHSLALGFF--NWASQ-------------QPNFTH 82
           G R S + +LV +++     P  +T  +L  G F  N AS+             QPN   
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL-- 225

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
             ++Y  ++  L      +   ++L +++  KI  D  ++  II SL + ++   A ++F
Sbjct: 226 --VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E++   + I P +   +SL++ L S G   +A ++  +M  + +  + + F   I  F 
Sbjct: 284 KEME--TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 341

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +  K  +   + D++ KR    I+  +     +++GFC   R+++A ++ + +  ++C P
Sbjct: 342 KEGKFVEAEKLYDDMIKRS---IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 398

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  + + F     V +   + ++    G+   T  Y   I GL  +          
Sbjct: 399 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG--------- 449

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                    D  +A   F  M+  G  P + T S L   LC   
Sbjct: 450 -------------------------DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +EV+  +  ++   D+  Y  M+  +C +G++ + + +   +  KG+ P+V  YN
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   C + LL+ A  L  +M   G   N  TYN LI      G+   +  L   M   
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 604

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAF 525
               DA+T   L+  +  +  L  +F
Sbjct: 605 RFVGDAST-IGLVANMLHDGRLDKSF 629



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 99/220 (45%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M++   +P++   + L   + K  K D ++ + + +   +    + +YN++++
Sbjct: 69  AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILIN 128

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   ++  A  ++ +M + G +P +   +SL+   C    +  A  L DQM   G   
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+  LI       +   A+ L   M+++G  P+  TY  ++ GLC+  +   A  + 
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           NK     +     I +T + SLC+  H   A  L + + +
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 18/219 (8%)

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
           +VE  K+LSA      M+ ++V++S      RL   +G+               YN L+ 
Sbjct: 85  IVEFNKLLSA---IAKMKKFDVVISLGEKMQRLEIVHGLYT-------------YNILIN 128

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CR   +  A  L  +M   G   ++ T + L++ +     I  A+ L   M+E G  P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  T+T+L+ GL        A  + ++ V              +  LC+RG   +A  LL
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248

Query: 564 RGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQ 600
             + +    +D  +   ++ SL   R V+ A+   K ++
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +L +A G+   M +    P +  +N L+ A  +         L ++M        L TYN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           ILI+ F    +I  AL L   M++ G  P   T +SLL G C    +  A  + ++ V
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 152/624 (24%), Positives = 264/624 (42%), Gaps = 82/624 (13%)

Query: 7   TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           T  A+  SQ +   ++  R  + W   L  +     +  +L P  V +V+    L    L
Sbjct: 21  TFCASPDSQFVACLTDIVRGNQSWRVALNNSF----ISQTLKPHHVEKVL-IQTLDDSRL 75

Query: 67  ALGFFNWASQQPNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV- 121
           AL FFN+     NF HS  S+    H++++S +L    +++   L    +N   L  S  
Sbjct: 76  ALRFFNFLGLHKNFDHSTTSFCILIHALVQS-NLYWPASSLLQTLLLRGLNPEGLFESFL 134

Query: 122 --YR-----------FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
             YR            +I + +Q +       V   +  +C  I P+I  +L  VL  +G
Sbjct: 135 DSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVV-RLMMDC-GILPQI-RTLSGVL--NG 189

Query: 169 YID-----NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
            I       AL +FDE+   G+      +   +   CE   L   +   + + + E+S  
Sbjct: 190 LIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCE---LKDFIRAREVIGRMESSGC 246

Query: 224 NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           + SV    + I G CK +RV EA ++           + ++Y+                 
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEI----------KNLLSYK----------------- 279

Query: 283 VLKKKRKLGVAPRTNDYREFILGLI-VERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
                   G+      Y   +LGL  VE      + + E+I  G    +  V N + G  
Sbjct: 280 --------GLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLR 331

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              +  SA    N + + G  P+L   + L  ++CK  K DE   ++  +     F +  
Sbjct: 332 KKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV 391

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y++++   C  G+L  A   + +M   G+   V  Y+SL+   C+   LR AK L+D+M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A+G   N+  Y  LIS + + GE+  A RL+H M  KG++P+  T+T+L+ GLC    +
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSH 576
             A ++F + V  +V+      +  +   C+ G+ + A +LL     +GL  D   + ++
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD---TYTY 568

Query: 577 VILLKSLADAREVEMAIEHIKWIQ 600
             L+  L     V  A E +  +Q
Sbjct: 569 RPLISGLCSTGRVSEAREFMNDLQ 592



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 195/444 (43%), Gaps = 29/444 (6%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMS 181
           ++  L +  N   AF + N+VK F    + P   + N+L+  +  DG +D A  +F+ M 
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFG---VAPSLFVYNALINSMCKDGKLDEAESLFNNMG 382

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGK 240
           H+G+  + + + + I  FC+  KL   L  L    K     I  +V     +I G CK  
Sbjct: 383 HKGLFPNDVTYSILIDSFCKRGKLDVALHFLG---KMTEVGIKATVYPYSSLISGHCKLG 439

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++  A  + DE+     KP+ + Y  +   +   G +     +  +    G++P T  + 
Sbjct: 440 KLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFT 499

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I GL    R+ EA +L   +V      ++   N LI G     +   A    + M+EK
Sbjct: 500 ALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY--------FTDMESYNVMVSFLC 411
           G VP   T   L   LC   +  E  E    L               ++ +Y  +++ LC
Sbjct: 560 GLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLC 619

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G + +A  + +EM      P+ + Y   ++    E  +  A +L D +   G   N  
Sbjct: 620 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-EGFLANTV 678

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--- 528
           TYNILI  F ++G I+ A  +  NM++ G++PD  +Y++++   C+  +L+ A +++   
Sbjct: 679 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 738

Query: 529 -NKSVNHDVMLARSILSTFMISLC 551
            N+ VN D     ++   F+I  C
Sbjct: 739 LNRGVNPD-----TVAYNFLIYGC 757



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/515 (22%), Positives = 212/515 (41%), Gaps = 63/515 (12%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S  +  +++  L     I +   ++ +VK   +     VY  +I S+ +     +A 
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAE 375

Query: 140 SVFNEVKFNC---EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           S+FN +        D+   I   L+      G +D AL    +M+  G++ +   +   I
Sbjct: 376 SLFNNMGHKGLFPNDVTYSI---LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI 432

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  KL    S+ DE+    N +    VI   +I G+CK   +  AF++  E+  + 
Sbjct: 433 SGHCKLGKLRAAKSLFDEMIA--NGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 257 CKPDFIAYRIV----------AEEFKLMGSVFEREVV----------------------- 283
             P+   +  +          AE  KL G + E  V+                       
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 284 --LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
             L +  + G+ P T  YR  I GL    R+ EA+E            +   LN + G +
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF-----MNDLQGEQQKLNEIEGCL 605

Query: 342 SSIDPRSAIV--------------FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            ++   +A++                  M+    +P  +T +     L      ++ +++
Sbjct: 606 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 665

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           + VL    +  +  +YN+++   C  GR++EA  V+  M   G+ PD   Y++++   CR
Sbjct: 666 HDVL-LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              L+ A KLW+ M   G + +   YN LI      GE+  A  L  +M+ +GV P+  T
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRAT 784

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           Y SL+ G C  +++ +  + F+  +N   +L+ S+
Sbjct: 785 YNSLIHGTCLMSSVSSTADYFSCKLNWCFLLSCSL 819


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 209/490 (42%), Gaps = 50/490 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     D  + + ++M    +      + + I  FC  +++   L++L ++ K
Sbjct: 51  NKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMK 110

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S++  S +    ++G+C GKR+ +A  ++D++     +PD I +  +     L  
Sbjct: 111 LGYEPSIVTLSSL----LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 166

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL        A  L   + + K   D  + N
Sbjct: 167 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 226

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I S+        A+  F  M  KG  P + T S+L   LC   +  +  ++   +   
Sbjct: 227 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 286

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ ++N ++      G+  EA  +  +M ++ +DPD+  YNSL+   C  D L  A
Sbjct: 287 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 346

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEV------------------------------- 483
           K++++ M +  C  ++ TYN LI  F +                                
Sbjct: 347 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 406

Query: 484 ----GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G+ + A ++F  M+  GV PD  TY+ LL+GLC    L+ A EVF+     ++ L 
Sbjct: 407 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 466

Query: 540 RSILSTFMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
             I +T +  +C+ G       L  +  L+G+  ++    ++  ++  L   R ++ A  
Sbjct: 467 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV---TYNTMISGLCSKRLLQEAYA 523

Query: 595 HIKWIQESSP 604
            +K ++E  P
Sbjct: 524 LLKKMKEDGP 533



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A+ + D M  RG + + + +GV +   C+       L++L+   K E + I   V+    
Sbjct: 171 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN---KMEAAKIEADVVIFNT 227

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   CK + V++A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 228 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RS 348
           + P    +   I   + E +  EA++L + ++  K +ID D+   N+L+      D    
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMI--KRSIDPDIFTYNSLVNGFCMHDRLDK 345

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F FM+ K   P + T + L K  CK  + ++  E+++ +S      D  +Y  ++ 
Sbjct: 346 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 405

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G    A  V ++M   G+ PD+  Y+ L++  C    L  A +++D M  S    
Sbjct: 406 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 465

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++  Y  +I    + G+++    LF ++  KGV P+  TY +++ GLC +  LQ A+ + 
Sbjct: 466 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 525

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            K      +      +T + +  R G    + +L+R + S
Sbjct: 526 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 213/506 (42%), Gaps = 66/506 (13%)

Query: 42  GLRDSLSPSLVARVIN----PYLLTHHSLALGFF--NWASQ-------------QPNFTH 82
           G R S + +LV +++     P  +T  +L  G F  N AS+             QPN   
Sbjct: 130 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL-- 187

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
             ++Y  ++  L      +   ++L +++  KI  D  ++  II SL + ++   A ++F
Sbjct: 188 --VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 245

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E++   + I P +   +SL++ L S G   +A ++  +M  + +  + + F   I  F 
Sbjct: 246 KEME--TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 303

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +  K  +   + D++ KR    I+  +     +++GFC   R+++A ++ + +  ++C P
Sbjct: 304 KEGKFVEAEKLYDDMIKRS---IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 360

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y  + + F     V +   + ++    G+   T  Y   I GL  +          
Sbjct: 361 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG--------- 411

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                    D  +A   F  M+  G  P + T S L   LC   
Sbjct: 412 -------------------------DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 446

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +EV+  +  ++   D+  Y  M+  +C +G++ + + +   +  KG+ P+V  YN
Sbjct: 447 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 506

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   C + LL+ A  L  +M   G   N  TYN LI      G+   +  L   M   
Sbjct: 507 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 566

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAF 525
               DA+T   L+  +  +  L  +F
Sbjct: 567 RFVGDAST-IGLVANMLHDGRLDKSF 591



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 99/220 (45%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M++   +P++   + L   + K  K D ++ + + +   +    + +YN++++
Sbjct: 31  AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILIN 90

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   ++  A  ++ +M + G +P +   +SL+   C    +  A  L DQM   G   
Sbjct: 91  CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+  LI       +   A+ L   M+++G  P+  TY  ++ GLC+  +   A  + 
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           NK     +     I +T + SLC+  H   A  L + + +
Sbjct: 211 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 18/219 (8%)

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
           +VE  K+LSA      M+ ++V++S      RL   +G+               YN L+ 
Sbjct: 47  IVEFNKLLSA---IAKMKKFDVVISLGEKMQRLEIVHGLYT-------------YNILIN 90

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CR   +  A  L  +M   G   ++ T + L++ +     I  A+ L   M+E G  P
Sbjct: 91  CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D  T+T+L+ GL        A  + ++ V              +  LC+RG   +A  LL
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210

Query: 564 RGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQ 600
             + +    +D  +   ++ SL   R V+ A+   K ++
Sbjct: 211 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 249



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +L +A G+   M +    P +  +N L+ A  +         L ++M        L TYN
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           ILI+ F    +I  AL L   M++ G  P   T +SLL G C    +  A  + ++ V
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 200/443 (45%), Gaps = 15/443 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L + +A     +  L +  +M  +G+  S     + I  FC   KL    S + ++ K
Sbjct: 92  NRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMK 151

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                   +VI   +++G C   RV EA +++D +     KP  I    +     L G V
Sbjct: 152 LGYE--PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKV 209

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +  V++ +  + G  P    Y   +  +    +   A EL   +      +D    + +
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 338 IGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I  +    S+D  +A   FN M  KG    + T + L    C   + D+  ++ + +   
Sbjct: 270 IDGLCKDGSLD--NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +++V++      G+LREA  +++EM ++G+ P+   YNSL++  C+E+ L  A
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D M + GC  ++ T+NILI+ + +   I+  L LF  M  +GV  +  TY +L++G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-----D 569
            CQ   L+ A ++F + V+  V          +  LC  G    A ++   +       D
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507

Query: 570 LGHSDSHVILLKSLADAREVEMA 592
           +G    ++I++  + +A +V+ A
Sbjct: 508 IG---IYMIIIHGMCNASKVDDA 527



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 201/450 (44%), Gaps = 42/450 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L  +G + +A+ + D M   G + + + +G  +   C   K GQ    ++ +RK
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMC---KSGQTALAMELLRK 253

Query: 218 RENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I   +V   +II G CK   ++ AF + +E+ I+  K D I Y  +   F   G 
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L+   K  ++P    +   I   + E ++ EA +L                  
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL------------------ 355

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                              M+++G  P   T ++L    CK N+ +E +++  ++ +   
Sbjct: 356 ----------------LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ ++N++++  C + R+ +   + +EM  +G+  +   YN+L++  C+   L  AKK
Sbjct: 400 DPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+ +M +     ++ +Y IL+    + GE+E AL +F  + +  +  D   Y  ++ G+C
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC 519

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
             + +  A+++F       V L     +  +  LCR+     A  L R ++ + GH+   
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE-GHAPDE 578

Query: 575 -SHVILLKSLADAREVEMAIEHIKWIQESS 603
            ++ IL+++     +   A E I+ ++ S 
Sbjct: 579 LTYNILIRAHLGDDDATTAAELIEEMKSSG 608



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 219/491 (44%), Gaps = 26/491 (5%)

Query: 9   LATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLAL 68
           L  R+S+A+           K T +   TL   GL       L  +V +  +L    +  
Sbjct: 170 LECRVSEALELVDRMVEMGHKPTLITLNTLVN-GL------CLNGKVSDAVVLIDRMVET 222

Query: 69  GFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
           GF      QPN     ++Y  +L  +  S Q      +L++++   I LD+  Y  II  
Sbjct: 223 GF------QPN----EVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           L +  +   AF++FNE++           N+L+    + G  D+  K+  +M  R +  +
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
            + F V I  F +  KL +   +L E+ +R   +   ++    +I GFCK  R+EEA ++
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQR--GIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           +D +  + C PD + + I+   +     + +   + ++    GV   T  Y   + G   
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP-TLS 366
             ++  AK+L + +VS +   D      L+ G   + +   A+  F   IEK ++   + 
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG-KIEKSKMELDIG 509

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
               +   +C  +K D+  +++  L       D  +YN+M+S LC    L +A  + ++M
Sbjct: 510 IYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKM 569

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             +G  PD   YN L+ A   +D    A +L ++M +SG   ++ T  ++I+  S  GE+
Sbjct: 570 TEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSS-GEL 628

Query: 487 EGALRLFHNML 497
           + +   F +ML
Sbjct: 629 DKS---FLDML 636



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 169/402 (42%), Gaps = 50/402 (12%)

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           NEV +     GP     +L V+   G    A+++  +M  R ++   + + + I   C++
Sbjct: 227 NEVTY-----GP-----VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKD 276

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             L    ++ +E+   E       +I    +I GFC   R ++  K+L ++  R+  P+ 
Sbjct: 277 GSLDNAFNLFNEM---EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNV 333

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + + ++ + F   G + E + +LK+  + G+AP T  Y   I G   E R+ EA ++ ++
Sbjct: 334 VTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDL 393

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++S     D    N LI G   +      +  F  M  +G +    T + L +  C+  K
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA---YGVIQEMKR--------- 428
            +   ++++ + +     D+ SY +++  LC +G L +A   +G I++ K          
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513

Query: 429 -----------------------KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
                                  KG+  D   YN ++   CR+D L  A  L+ +M   G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            + +  TYNILI       +   A  L   M   G   D +T
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVST 615



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 9/245 (3%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           D + + L+G    I    A+  F  MI+   +PT+   + L   + K  + + ++ + K 
Sbjct: 58  DKLSSGLVG----IKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQ 113

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +      + + ++M++  C   +L  A+  + ++ + G +PD   +N+L+   C E  
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L D+M   G    L T N L++     G++  A+ L   M+E G  P+  TY  
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRG 565
           +L  +C+      A E+  K    ++ L     S  +  LC+ G    A  L     ++G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 566 LSSDL 570
             +D+
Sbjct: 294 FKADI 298


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/579 (21%), Positives = 229/579 (39%), Gaps = 86/579 (14%)

Query: 47  LSPSLVARVINPYLLTHHSL--ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           LSP L A  +   +  H      + FF W S++P + H+   + S+L  L   R     D
Sbjct: 69  LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPAD 128

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
            +  ++ + K   +    R +   L +       FS+++             CN+LL  L
Sbjct: 129 HI--RILMIKACRNEEEIRRVADFLNEISGMGFGFSLYS-------------CNTLLIQL 173

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK-------LGQVLS------- 210
           A    ++ A  ++ +M + G++ S + F   I    +  K       L Q+         
Sbjct: 174 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDV 233

Query: 211 ------MLDEVRKRENSMING-------------SVIAVLIIHGFCKGKRVEEAFKVLDE 251
                 +L   R R   +  G             SV    +I+G C   RV+EA  +L+E
Sbjct: 234 FTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----- 306
           +  +  +P    Y +       +    E   ++ + +K G  P    Y   I GL     
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 353

Query: 307 ---------------IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS--------- 342
                          +V   +     + E+ V G+F+    + + + G  S         
Sbjct: 354 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 413

Query: 343 -------SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                    D   A+V F  M++ G +PT+ T + L      +   +    +  ++  N 
Sbjct: 414 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 473

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +YN +VS     G+L  A    QEM   GL+P+   Y +L++   ++  +  A 
Sbjct: 474 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIAL 533

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L  +M   GC+ N+++YN +I+  S+      A ++   M+E+G+ P+  TYT+L++GL
Sbjct: 534 SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           C+    Q AF++F+       +      S+ +  LC+ G
Sbjct: 594 CRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEG 632



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 206/467 (44%), Gaps = 17/467 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++  LS   ++     +  ++    +  ++  Y  +I  L  G     A  +F+ +
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + +      +  N ++  L   G I+ A+ +F++M   G   + + +   I  +     +
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +LD ++  EN           ++ GF K  ++E A     E+      P+ ++Y 
Sbjct: 460 NNAARLLDLMK--ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + +     G V     +LK+  ++G  P    Y   I GL  E R  EA+++ + +V  
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ 577

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               +      LI  +   + R+   F  F+ M ++  +P L T S+L   LC+  K+DE
Sbjct: 578 GLLPNVITYTTLIDGLCR-NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE 636

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              + ++         +++Y+ +VS LC  GR  EA  ++++MK +G  PD   Y SL+ 
Sbjct: 637 AERMSEIGCE----PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI 692

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C+   +  A K++  + A G   +L  Y  LI    + G++E A  LF NMLEK    
Sbjct: 693 AHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA 752

Query: 504 DATTYTSLLEGLCQETNLQAAFEV--------FNKSVNHDVMLARSI 542
           D   +T L++GL +E  L    ++        F  ++   V+L R +
Sbjct: 753 DEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGREL 799



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 128/594 (21%), Positives = 237/594 (39%), Gaps = 71/594 (11%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S L++++++  LS   ++   + +L Q+    ++ D   Y  +I    + +N   AF VF
Sbjct: 197 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 256

Query: 143 NE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +  VK  C D      ++L+  L ++G +D AL M +EM  +G+E +   + + I   C 
Sbjct: 257 DRMVKEGC-DPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315

Query: 202 NAKLGQVLSMLDEVRKR---------------------------------ENSMINGSVI 228
                + + ++  ++KR                                 +  ++  +V 
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +I+  C G R   A K+   +       +   Y  + +   L G + +  V+ +K  
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-R 347
           K+G  P    Y   I G + +  +  A  L +++       D+   N L+   S      
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           SA  +F  M+E G  P   + + L     K  K D  + + K +       ++ESYN ++
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM------ 461
           + L    R  EA  +  +M  +GL P+V  Y +L++  CR    + A K++  M      
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615

Query: 462 -----FAS--------------------GCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
                ++S                    GC   L TY+ L+S     G    A +L  +M
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDM 675

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            E+G  PD   Y SLL   C+   +  A ++F+        L  SI    + +LC+ G  
Sbjct: 676 KERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQV 735

Query: 557 LVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIE--HIKWIQESSPTM 606
             A  L   +     ++D  V  +L+  L    E+++ ++  HI   +  +P +
Sbjct: 736 EEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNI 789



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 41/252 (16%)

Query: 383 ELVE----VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           E+VE    +YK +  +     + ++N +++ L   G++REA  ++ ++ +  L PDV  Y
Sbjct: 177 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
            SL+   CR   L  A  ++D+M   GC  N  TY+ LI+     G ++ AL +   M+E
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 499 KGVAP-----------------------------------DATTYTSLLEGLCQETNLQA 523
           KG+ P                                   +  TYT+L+ GL +   L+ 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS--SDLGHSDSHVILLK 581
           A  +++K +   ++      +  +  LC  G F  A K+   +     L ++ ++  ++K
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIK 416

Query: 582 SLADAREVEMAI 593
            L    ++E A+
Sbjct: 417 GLCLGGDIEKAM 428



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +R     + E+   G    +   N+L+    + +++  A+ L+ QM  SG   +L T+N 
Sbjct: 144 IRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNT 203

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+  S+ G++  A  +   + +  ++PD  TYTSL+ G C+  NL  AF VF++ V   
Sbjct: 204 LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG 263

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL 563
                   ST +  LC  G    A  +L
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDML 291


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 196/435 (45%), Gaps = 9/435 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L        A+ + D M  +G +   + +GV +   C+         +L+++  
Sbjct: 190 NTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKME- 248

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +  +  G +I   II G CK K +++A  +  E+  +  +P+ + Y  +       G  
Sbjct: 249 -QGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
            +   +L    +  + P    +   I   + E ++ EA++L + +V  K +ID  ++  +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV--KRSIDPSIVTYS 365

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI      D    A   F FM+ K   P + + S L K  CK  + DE +E+++ +S  
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQR 425

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               +  +Y  ++  L  +G    A  + +EM   G+ P++  YN+L++  C+   L  A
Sbjct: 426 GLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             +++ +  S     + TYNI+I    + G++E    LF N+  KGV PD   Y +++ G
Sbjct: 486 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG 545

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C++ + + A  +F +      +      +T + +  R G    + +L++ + S     D
Sbjct: 546 FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605

Query: 575 SHVILLKS--LADAR 587
           +  I L +  L D R
Sbjct: 606 ASTIGLVTNMLHDGR 620



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 196/451 (43%), Gaps = 10/451 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     +++++++  L L  + +   +++ ++       D   Y  ++  L +  +T 
Sbjct: 183 QPN----TVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            AF + N+++    + G  I  +++  L  + ++D+AL +F EM  +G+  + + +   I
Sbjct: 239 LAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIR 255
              C   +      +L ++ +R+   IN  V     +I  F K  ++ EA K+ DE+  R
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERK---INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
              P  + Y  +   F +   + E + + +        P    Y   I G    +R+ E 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEG 415

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            EL   +       +      LI G   + D   A   F  M+  G  P + T + L   
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K ++ + V++ L  +     + +YN+M+  +C +G++ + + +   +  KG+ PD
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  YN+++   CR+     A  L+ +M   G   N   YN LI      G+ E +  L  
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            M   G A DA+T   L+  +  +  L  +F
Sbjct: 596 EMRSCGFAGDAST-IGLVTNMLHDGRLDKSF 625



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/455 (21%), Positives = 208/455 (45%), Gaps = 48/455 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL+ +A     D  + + ++M + G+  +   + + I  FC  ++L   L++L ++ K  
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E +++  S +    ++G+C  KR+ EA  ++D++ +                       
Sbjct: 147 YEPNIVTLSSL----LNGYCHSKRISEAVALVDQMFVT---------------------- 180

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                        G  P T  +   I GL +  +  EA  L + +V+     D      +
Sbjct: 181 -------------GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVV 227

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           + G     D   A +  N M E+G++ P +   + +   LCK    D+ + ++K +    
Sbjct: 228 VNGLCKRGDTDLAFILLNKM-EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKG 286

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ +Y+ ++S LC  GR  +A  ++ +M  + ++PDV  +++L++A  +E  L  A+
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL+D+M       ++ TY+ LI+ F     ++ A ++F  M+ K   PD  +Y++L++G 
Sbjct: 347 KLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGF 406

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD- 574
           C+   +    E+F +     ++      +T +  L + G   +A ++ + + SD    + 
Sbjct: 407 CKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNI 466

Query: 575 -SHVILLKSLADAREVEMAIEHIKWIQESS--PTM 606
            ++  LL  L    ++E A+   +++Q S   PT+
Sbjct: 467 MTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +L +A  +  EM +    P +  ++ L+ A  + +       L +QM   G   N  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ILI+ F    ++  AL +   M++ G  P+  T +SLL G C    +  A  + ++
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 181/414 (43%), Gaps = 38/414 (9%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           + CN+LL  LA  G +    K+FDEM   + V  +   +   I   C+  K+     +L 
Sbjct: 194 KTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILS 253

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           ++         G+V   L++   CK  RV+EA ++   +      P  + + I+    K 
Sbjct: 254 DLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKR 313

Query: 274 MGSVFEREVVLKKKRKLGVAP-------------RTNDYREFILGL-------------- 306
                E   +L++   LG+ P             R   + E I                 
Sbjct: 314 SDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVT 373

Query: 307 --IVERRICEAKELG------EVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFM 356
             ++ R +C+  E+       E ++S   TI   + N+++  +     R  S +   + M
Sbjct: 374 YNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEM 433

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +++G  P  + ++  +K LC+  +  E V ++  +       ++ + N ++  LC    +
Sbjct: 434 VKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNM 493

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           + A  V++ M  KG++ D   YN +++ CC++  +  A KL D M   G   +   +N +
Sbjct: 494 KGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSI 553

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           I  + ++G++E AL L   M  +GV PD  +Y ++++G C+  ++Q A E  N+
Sbjct: 554 IHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNE 607



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/507 (20%), Positives = 212/507 (41%), Gaps = 42/507 (8%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           +++L++L+ +  + A   V  +++  K +T +   Y  +I +L +       F + +++ 
Sbjct: 197 NALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLI 256

Query: 147 FNC--EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                +  G    N L+  L   G +D A+++   M    V  S + FG+ I     + +
Sbjct: 257 HAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDR 316

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            G+V ++L E+      +    VI   +I   C+     EA ++ DE+  +E K   + Y
Sbjct: 317 FGEVGALLREMEGL--GITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTY 374

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI----------------- 307
            ++A      G +   E +L++    G+   +  +   + GL+                 
Sbjct: 375 NLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMV 434

Query: 308 -------------VERRICEAKELGEVI------VSGKFTIDDDVLNALI-GSVSSIDPR 347
                          +++C+ +   E +      +     I+    NALI G     + +
Sbjct: 435 KRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMK 494

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A      M+ KG      T + + +  CK +K +E +++   +    +  D   +N ++
Sbjct: 495 GATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSII 554

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G++ EA  ++ +MK +G+ PDV  Y ++++  C+   ++ A +  +++ A G  
Sbjct: 555 HAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLK 614

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N   YN LI  +   G I GA+ +   M   G+ P   TY SL+  +C    +  A  +
Sbjct: 615 PNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTM 674

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRG 554
           F +S  + + +     +  +  LC+ G
Sbjct: 675 FEQSRKNSIEVGVVGYTIMIQGLCKIG 701



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 190/439 (43%), Gaps = 21/439 (4%)

Query: 70  FFNWASQQPNFTH---------------SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK 114
             +W  ++ +FT                + ++Y+ I ++L    ++   + +L+++    
Sbjct: 342 LIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTG 401

Query: 115 ITLDSSVYRFIIPSLIQGKNT-QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           +T+ S ++  ++  L+Q     +    + +E+          +  +    L        A
Sbjct: 402 MTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEA 461

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           + ++ +M  +G+  +       I   CE   +     +L  +  +   + N  +   ++I
Sbjct: 462 VGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDN--ITYNIMI 519

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            G CK  ++EEA K+ D++  +  KPD   +  +   +  +G + E   +L + +  GV 
Sbjct: 520 QGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQ 579

Query: 294 PRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIV 351
           P    Y   I G    + I +A E L E++  G    +  + NALIG    + +   AI 
Sbjct: 580 PDVVSYGTIIDGYCKAKDIQKANEYLNELMACG-LKPNAVIYNALIGGYGRNGNISGAIG 638

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
             + M   G  PT  T  +L   +C     DE   +++    N     +  Y +M+  LC
Sbjct: 639 VLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLC 698

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G++ EA    +EM+ + + P+   Y +LM A C+      A KL+D+M +SG   +  
Sbjct: 699 KIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNV 758

Query: 472 TYNILISKFSEVGEIEGAL 490
           +YN L++ FS+V  ++ A+
Sbjct: 759 SYNTLVTGFSQVDSLDKAI 777



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 179/422 (42%), Gaps = 45/422 (10%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           ICN L+      G+   A+++FDEM  + ++ + + + +     C+  ++ +   +L+E+
Sbjct: 338 ICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEM 397

Query: 216 RKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                ++ +G   SV+A L+     +  R+E   +++ E+  R  KP+        ++  
Sbjct: 398 LSTGMTIHSGLFNSVVAGLLQ----RTGRLESVVRLISEMVKRGMKPNDALMTACTKQL- 452

Query: 273 LMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             G   +  V +  K  + G+          I GL   + +  A E+   +V+    +D+
Sbjct: 453 CQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDN 512

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE------- 383
              N +I G         A+   + MI KG  P     +++    C   K +E       
Sbjct: 513 ITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQ 572

Query: 384 ---------------LVEVY----KVLSANDYFTDMES---------YNVMVSFLCTSGR 415
                          +++ Y     +  AN+Y  ++ +         YN ++     +G 
Sbjct: 573 MKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGN 632

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A GV+  M+  G+ P    Y SLM   C   L+  AK +++Q   +     +  Y I
Sbjct: 633 ISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTI 692

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I    ++G+++ A+  F  M  + + P+  TYT+L+   C+  N + A ++F++ V+  
Sbjct: 693 MIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSG 752

Query: 536 VM 537
           ++
Sbjct: 753 IV 754



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 109/247 (44%), Gaps = 25/247 (10%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-- 388
           D ++N  + S +    R A+  F+ +  +   P++ T + L + L +        +V+  
Sbjct: 159 DLLINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDE 218

Query: 389 ----KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF--YNSLM 442
               K ++ N Y     SY  M+  LC  G++ + + ++ ++   GL        YN LM
Sbjct: 219 MRDCKTVTPNGY-----SYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLM 273

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS------KFSEVGEIEGALRLFHNM 496
           +A C+   +  A +L  +M  S  + ++ T+ ILI+      +F EVG       L   M
Sbjct: 274 DALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGA------LLREM 327

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
              G+ P+      L++  C++ +   A  +F++ V+ ++       +    +LC+ G  
Sbjct: 328 EGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEM 387

Query: 557 LVATKLL 563
             A ++L
Sbjct: 388 ERAERIL 394



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 5/237 (2%)

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLME 443
           V+ + VLS+      +++ N ++  L  +G L     V  EM+  K + P+   Y S+++
Sbjct: 178 VDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIK 237

Query: 444 ACCREDLLRPAKKLWDQMFASGC--SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           A C+   +    K+   +  +G   S     YN+L+    + G ++ A+RL   M E  V
Sbjct: 238 ALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRV 297

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           AP   T+  L+ GL +         +  +     +     I +  +   CR+GHF  A +
Sbjct: 298 APSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIR 357

Query: 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618
           L   + S    S +    L + A  +E EM  E  + I E   +    I + LF S+
Sbjct: 358 LFDEMVSKEMKSTAVTYNLIARALCKEGEM--ERAERILEEMLSTGMTIHSGLFNSV 412


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/531 (22%), Positives = 229/531 (43%), Gaps = 35/531 (6%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF   +    F H+PL++  +++ L++  Q++++  +L+Q+K+        ++  +
Sbjct: 58  LALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISV 117

Query: 126 IPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           I    Q    ++A  +F  +K F C D   +I N +L  L  +  I     ++ +M   G
Sbjct: 118 ISVYRQVGLAERAVEMFYRIKEFGC-DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 176

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVL---------- 231
            E +   + V +   C+N K+     +L E+  +    +++   +VI+ +          
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGR 236

Query: 232 ---------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                          +I+G CK    + AF+++ E+  +   P+ I+Y  +       G 
Sbjct: 237 ELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQ 296

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-- 334
           +      L +  K G  P        + G  +     +A +L   ++ G F +  +V+  
Sbjct: 297 IELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRG-FGLQPNVVAY 355

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N L+ G  S  +   A+  F+ M E G  P + T  +L     KR   D  V ++  +  
Sbjct: 356 NTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT 415

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    ++  Y  MV  LC   + +EA  +I+ M ++   P V  +N+ ++  C    L  
Sbjct: 416 SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 475

Query: 454 AKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           A+K++ QM     C  N+ TYN L+   ++   IE A  L   +  +GV   ++TY +LL
Sbjct: 476 AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLL 535

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            G C       A ++  K +          ++  +++ C++G    A ++L
Sbjct: 536 HGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 19/187 (10%)

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G    A  +   +K  G DP V  YN +++    E+ ++    ++  M   G   N+ TY
Sbjct: 125 GLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTY 184

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV---FNK 530
           N+L+    +  +++GA +L   M  KG  PDA +YT+++  +C+   ++   E+   F  
Sbjct: 185 NVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEP 244

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLAD 585
            V        S+ +  +  LC+   +  A +L+R     G+S ++    S+  L+  L +
Sbjct: 245 VV--------SVYNALINGLCKEHDYKGAFELMREMVEKGISPNV---ISYSTLINVLCN 293

Query: 586 AREVEMA 592
           + ++E+A
Sbjct: 294 SGQIELA 300



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 158/378 (41%), Gaps = 17/378 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG----KNTQKAFS 140
           +SY +++  L  S QI    S L Q+   K     ++Y   + SL++G      T  A  
Sbjct: 282 ISYSTLINVLCNSGQIELAFSFLTQML--KRGCHPNIY--TLSSLVKGCFLRGTTFDALD 337

Query: 141 VFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           ++N++      + P +   N+L+    S G I  A+ +F  M   G   +   +G  I  
Sbjct: 338 LWNQM-IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLING 396

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           F +   L   + + +++    +      V+   ++   C+  + +EA  +++ +    C 
Sbjct: 397 FAKRGSLDGAVYIWNKMLT--SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCA 454

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           P    +    +     G +   E V ++ +++    P    Y E + GL    RI EA  
Sbjct: 455 PSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYG 514

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           L   I            N L+ GS ++  P  A+     M+  G+ P   T++ +    C
Sbjct: 515 LTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYC 574

Query: 377 KRNKSDELVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           K+ K++   ++  ++S     +  D+ SY  ++  LC S    +   +++ M   G+ P 
Sbjct: 575 KQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPS 634

Query: 435 VSFYNSLMEACCREDLLR 452
           ++ ++ L+     +D++R
Sbjct: 635 IATWSVLINCFILDDIVR 652



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/480 (18%), Positives = 174/480 (36%), Gaps = 82/480 (17%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  F  +  +Y+ +LK+L  + +++    +L ++       D+  Y  +I S+ +    
Sbjct: 173 KRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCE---- 228

Query: 136 QKAFSVFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
                +  E +   E   P   + N+L+  L  +     A ++  EM  +G+  + I + 
Sbjct: 229 ---VGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYS 285

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRE----------------------------NSMING 225
             I   C + ++    S L ++ KR                             N MI G
Sbjct: 286 TLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRG 345

Query: 226 -----SVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                +V+A   ++ GFC    + +A  V   +    C P+   Y  +   F   GS+  
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +  K    G  P    Y   +  L    +  EA+ L E++            NA I 
Sbjct: 406 AVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIK 465

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           G   +     A   F  M ++ R P  + T + L   L K N+ +E   + + +      
Sbjct: 466 GLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE--------- 448
               +YN ++   C +G    A  ++ +M   G  PD    N ++ A C++         
Sbjct: 526 WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM 585

Query: 449 -DLLRPAKKLW---------------------------DQMFASGCSGNLKTYNILISKF 480
            DL+   ++ W                           ++M ++G   ++ T+++LI+ F
Sbjct: 586 LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCF 645


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 214/521 (41%), Gaps = 55/521 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ-VKVNKITLDSSVYRFI 125
           +LGFF + S+Q NF  +  SY  ++  LS  R  +   + L Q V + K     +V   I
Sbjct: 85  SLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNV---I 141

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
              L+          V+ E  F+     P + + +L V    G   NAL +FD M   G 
Sbjct: 142 WDELV---------GVYREFAFS-----PTVFDMILKVYVEKGLTKNALYVFDNMGKCGR 187

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
             S       +    +N +      +  ++ +    ++    +  ++++ FCK  +V+EA
Sbjct: 188 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRV--GIVPDVFMVSIMVNAFCKDGKVDEA 245

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              + ++     +P+ + Y  +   +  +G V   + VLK   + GV+     Y   I G
Sbjct: 246 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 305

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
              + ++ EA++                                 V      E   VP  
Sbjct: 306 YCKQCKMDEAEK---------------------------------VLRGMQEEAALVPDE 332

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                L    C+  K D+ V +   +      T++   N +++  C  G + EA GVI  
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M    L PD   YN+L++  CRE     A  L D+M   G    + TYN L+     VG 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + AL+++H M++ GVAPD   Y++LL+GL +  N + A  ++   +      +R   +T
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
            +  LC+ G  + A ++   +  DLG S    I  ++L D 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKM-KDLGCSPDG-ITYRTLIDG 551



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 214/470 (45%), Gaps = 24/470 (5%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV---NKITLDSSVYRFIIPSLIQGK 133
           Q     + L+Y+++LK L    ++ A D  L+   +     +  D   Y  ++  L + +
Sbjct: 430 QEGIEPTVLTYNTLLKGLC---RVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKME 486

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           N + A +++ ++            N++++ L   G +  A ++FD+M   G     I + 
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDEL 252
             I  +C+ + +GQ   +   +   E   I+ S+ +   +I G  K +R+ E   +L E+
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAM---EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEM 603

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            IR   P+ + Y  + + +   G + +      +  + G++         + GL    RI
Sbjct: 604 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663

Query: 313 CEAKELGEVIVSGKFTID------DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            EA  L + +V   F  D       D+  A I  ++     S   F         +P   
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFL--------LPNNI 715

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             +     LCK  K D+    + +LS   +  D  +Y  ++     +G + EA+ +  EM
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
            R+GL P++  YN+L+   C+ + +  A++L+ ++   G   N+ TYN LI  + ++G +
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           + A +L   M+E+G++P   TY++L+ GLC+  +++ + ++ N+ +   V
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 219/522 (41%), Gaps = 61/522 (11%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +S++       +I+  + V+ ++    +  DS  Y  ++    +  +T +AF++ +  K 
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KM 428

Query: 148 NCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             E I P +   N+LL  L   G  D+AL+++  M   GV    +G+   +    +    
Sbjct: 429 LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENF 488

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               ++  ++  R        +    +I G CK  ++ EA ++ D+++   C PD I YR
Sbjct: 489 EGASTLWKDILAR--GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 266 I----------VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
                      V + FK+ G++ ERE +         +P    Y   I GL   RR+ E 
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAM-EREXI---------SPSIEMYNSLISGLFKSRRLVEX 596

Query: 316 KEL-GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            +L  E+ + G  T +     ALI G         A   +  M E G    +   S +  
Sbjct: 597 TDLLTEMGIRG-LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVS 655

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMES------------------------------- 402
            L +  + DE   + + +  + +F D E                                
Sbjct: 656 GLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNI 715

Query: 403 -YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN+ ++ LC +G++ +A      +  KG  PD   Y +L+        +  A +L D+M
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N+ TYN LI+   +   ++ A RLFH + +KG+ P+  TY +L++G C+  N+
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            AAF++ +K +   +  +    S  +  LC+ G    + KLL
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLL 877



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 188/443 (42%), Gaps = 43/443 (9%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +++++++  L    ++   + +  ++K    + D   YR +I    +  N  +AF
Sbjct: 503 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 562

Query: 140 SVFNEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            V   ++   E I P  E+ NSL++ L     +     +  EM  RG+  + + +G  I 
Sbjct: 563 KVKGAMER--EXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALID 620

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            +C+   L +  S   E+   EN +    +I   ++ G  +  R++EA  ++ ++     
Sbjct: 621 GWCKEGMLDKAFSSYFEMT--ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 678

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD   +      +  +  + +    L +  K  + P    Y   I GL    ++ +A+ 
Sbjct: 679 FPDHECFLKSDIRYAAIQKIADS---LDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARR 735

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
                                             FF+ +  KG VP   T   L      
Sbjct: 736 ----------------------------------FFSMLSLKGFVPDNFTYCTLIHGYSA 761

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE   +   +       ++ +YN +++ LC S  +  A  +  ++ +KGL P+V  
Sbjct: 762 AGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 821

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN+L++  C+   +  A KL D+M   G S ++ TY+ LI+   + G+IE +++L + M+
Sbjct: 822 YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMI 881

Query: 498 EKGVAPDATTYTSLLEGLCQETN 520
           + GV      Y +L++G  + +N
Sbjct: 882 KAGVDSKLIEYCTLVQGGFKTSN 904


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 189/454 (41%), Gaps = 47/454 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L+ LA      +AL ++  M    V  +T  FGV     C   + G  L++L  + +
Sbjct: 146 NVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMAR 205

Query: 218 R---ENSMINGSVIAVLI------------------------------IHGFCKGKRVEE 244
                ++++  +VI  L+                              + G C   RV E
Sbjct: 206 HGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVRE 265

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREF 302
           A +++D +  + C P  + Y      F L G    R+   +    LG  P  N       
Sbjct: 266 AARLVDRMMTQGCMPSVVTY-----GFLLQGLCRTRQAD-EACAMLGRLPEVNVVMLNTV 319

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGR 361
           I G + E ++  A EL E++ S     D    + L+  +  +    SA+   + M EKG 
Sbjct: 320 IRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGC 379

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T S L  + C+    D+   +   + A  +  + + YN ++  LC  G+L +A  
Sbjct: 380 APNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATR 439

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++QEMK +G  PD+  YN+++   C  DL+  A+ ++  +   G   N  TYN LI    
Sbjct: 440 LVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALL 499

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G  +  LRL   ML  G   D  +Y  L++ LC+E N+  +  +  + V   +     
Sbjct: 500 RNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNF 559

Query: 542 ILSTFMISLCRRGHFLVATKLLR-----GLSSDL 570
             +  +  LC+ G    A +L +     GL+ D+
Sbjct: 560 SYNMLINELCKAGKVRDALELSKEMLNQGLTPDI 593



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 197/444 (44%), Gaps = 12/444 (2%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           L R  +A+ ++L+ +  +    D+ +Y+ +I +L+      +A  + +E+          
Sbjct: 190 LGRAGDAL-ALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVN 248

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             N L+  L   G +  A ++ D M  +G   S + +G  +   C   +  +  +ML  +
Sbjct: 249 TFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRL 308

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            +    M+N       +I G     ++  A ++ + +  + C PD   Y I+      +G
Sbjct: 309 PEVNVVMLN------TVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLG 362

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                  +L +  + G AP    Y   +          +A+ + + +++  F+++    N
Sbjct: 363 RFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYN 422

Query: 336 ALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            +I ++     +D  + +V    M  +G  P + T + +  +LC  +  +E   +++ L 
Sbjct: 423 GIIYALCKDGKLDQATRLV--QEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLI 480

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +  +YN ++  L  +GR +E   +  EM   G   DV  YN L++A C+E  + 
Sbjct: 481 EEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVD 540

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            +  L ++M   G   N  +YN+LI++  + G++  AL L   ML +G+ PD  TY +L+
Sbjct: 541 RSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLI 600

Query: 513 EGLCQETNLQAAFEVFNKSVNHDV 536
            GLC+     AA  +  K  N +V
Sbjct: 601 NGLCKVGWTHAALNLLEKLPNENV 624



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 197/454 (43%), Gaps = 65/454 (14%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S ++Y  +L+ L  +RQ +   ++L ++ +VN + L++         +I+G  T+   + 
Sbjct: 281 SVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNT---------VIRGCLTEGKLAR 331

Query: 142 FNEVKFNCEDIGPEICNS-------LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
             E+    E +G + C         L+  L   G   +A++M DEM  +G   + + +  
Sbjct: 332 ATELY---EMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYST 388

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSM----INGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            +  FC N       +MLD++  +  SM     NG      II+  CK  ++++A +++ 
Sbjct: 389 LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNG------IIYALCKDGKLDQATRLVQ 442

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E++ + CKPD   Y  +         + E E + +   + GV      Y   I  L+   
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           R  E   L   ++     +D                   ++ +N +I             
Sbjct: 503 RWQEGLRLASEMLLHGCQLD-------------------VISYNGLI------------- 530

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
             K LCK    D  + + + +       +  SYN++++ LC +G++R+A  + +EM  +G
Sbjct: 531 --KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L PD+  YN+L+   C+      A  L +++       ++ TYNILIS   +V  ++ A 
Sbjct: 589 LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAA 648

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQA 523
            L    +  G+ P+  T+  +++   ++T NL+ 
Sbjct: 649 MLLDKAISGGIVPNERTWGMMVQNFVRQTVNLEG 682



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 6/202 (2%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++ V    LC  GR  +A  +++ M R G  PD   Y +++ A   +  +  A  L D+M
Sbjct: 179 TFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEM 238

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC+ ++ T+N L+     +G +  A RL   M+ +G  P   TY  LL+GLC+    
Sbjct: 239 LLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQA 298

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--IL 579
             A  +  +    +V++    L+T +      G    AT+L   + S     D H   IL
Sbjct: 299 DEACAMLGRLPEVNVVM----LNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSIL 354

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
           +  L        A+  +  ++E
Sbjct: 355 MHGLCKLGRFGSAVRMLDEMEE 376


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/512 (21%), Positives = 230/512 (44%), Gaps = 49/512 (9%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW P  E+ L  L LR  +   LV  ++   +    ++ + FF WA+++ N+ H   +Y 
Sbjct: 72  KWGPDAEKALEVLMLR--VDHWLVREIMKTDIGV--NVKMQFFRWAAKRRNYEHDTSTYM 127

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++  L +  Q   +  +++++  N I  +  +    ++  L   K   KA ++F ++K 
Sbjct: 128 ALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKT 187

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLG 206
                  +  NS++ +L  +G  +   ++++EMS  G  F  T+ +   I  FC+  +  
Sbjct: 188 RKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRD 247

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + +L+E++  +N M   + I  +++  F K   V  A  + +E+R + C+PD   Y  
Sbjct: 248 SAIQLLNEMK--DNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYT- 304

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
                         E++    R LG A R ++   F   +  +R  C             
Sbjct: 305 --------------ELI----RGLGKAGRIDEAYHFFYEM--QREGCRP----------- 333

Query: 327 FTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK-RNKSD 382
              D  V+N +I   G    +D   A+  F  M     +P++ T + + K L + ++++ 
Sbjct: 334 ---DTIVMNNMINFLGKAGRLD--DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRAS 388

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E+   ++ +  +       +Y++++   C + R+ +A  +++EM  KG  P  + Y SL+
Sbjct: 389 EVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLI 448

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +A  +      A +L+ ++  +  S + + Y ++I    + G ++ A+ +F  M + G A
Sbjct: 449 DALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCA 508

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           PD   Y +L+ GL +   L  A     +   H
Sbjct: 509 PDVYAYNALMSGLARTGMLDEALSTMRRMQEH 540



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 10/283 (3%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           V T + LS + + L       + + ++  +         ++YN M+  L   G+  + + 
Sbjct: 156 VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHE 215

Query: 422 VIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
           +  EM  +G   PD   Y++L+ A C+      A +L ++M  +G     K Y +L++ F
Sbjct: 216 LYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALF 275

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            ++ ++ GAL LF  M  +   PD  TYT L+ GL +   +  A+  F +          
Sbjct: 276 FKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDT 335

Query: 541 SILSTFMISLCRRGHFLVATKL------LRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
            +++  +  L + G    A KL      LR + S + ++     L +S + A EV    E
Sbjct: 336 IVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
            +K    S  +    I   L      ++  E  ++LL  + EK
Sbjct: 396 RMKESGISPSSFTYSI---LIDGFCKTNRMEKAMMLLEEMDEK 435


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 134/570 (23%), Positives = 232/570 (40%), Gaps = 59/570 (10%)

Query: 61  LTHHSLALGFFNWASQQPNF------------TH--------SPLSYHSILKSLSL---- 96
           L H  LAL F  W  +QP              TH         P  +  ILK LSL    
Sbjct: 47  LVHGKLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARH--ILKELSLMSGK 104

Query: 97  -SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
            S    A+ +  +    N      SVY  +I   ++    Q +  +F  +     +    
Sbjct: 105 SSFVFGALMTTYRLCNSN-----PSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVY 159

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN++L  +   G   +      EM  R +      F + I   C      +   ++   
Sbjct: 160 TCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM--- 216

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +K E S    +++    ++H +CK  R + A ++LD ++ +    D   Y ++  +    
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             + +  ++L+  RK  + P    Y   I G   E ++  A +L   ++S   + +    
Sbjct: 277 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NALI G +S  + + A+  F  M  KG  P+  +   L   LCK  + D     Y  +  
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           N       +Y  M+  LC +G L EA  ++ EM + G+DPD+  Y++L+   C+    + 
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKT 456

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK++  +++  G S N   Y+ LI     +G ++ A+R++  M+ +G   D  T+  L+ 
Sbjct: 457 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVT 516

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSI---------------LSTFMI--SLCRRGH- 555
            LC+   +  A E F + +  D +L  ++               L  F +   + + GH 
Sbjct: 517 SLCKAGKVAEA-EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH 575

Query: 556 --FLVATKLLRGLSSDLGHSDSHVILLKSL 583
             F     LL+GL    GH       LKSL
Sbjct: 576 PTFFTYGSLLKGLCKG-GHLREAEKFLKSL 604



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 223/535 (41%), Gaps = 75/535 (14%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  +  + ++Y+++L       +  A   +L  +K   +  D   Y  +I  L +    
Sbjct: 220 EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI 279

Query: 136 QKAFSVF----------NEVKFNCED----------IGPEICNSLLAVLAS--------- 166
            K + +           NEV +N             I  ++ N +L+   S         
Sbjct: 280 AKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNAL 339

Query: 167 -DGYIDN-----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            DG+I       ALKMF  M  +G+  S + +GV +   C+NA+    L+    +R + N
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFD--LARGFYMRMKRN 397

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +  G +    +I G CK   ++EA  +L+E+      PD + Y  +   F  +G     
Sbjct: 398 GVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTA 457

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + ++ +  ++G++P          G+I    I     +G +                   
Sbjct: 458 KEIVCRIYRVGLSPN---------GIIYSTLIYNCCRMGCL------------------- 489

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                 + AI  +  MI +G      T + L  +LCK  K  E  E  + ++++    + 
Sbjct: 490 ------KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 543

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            S++ +++    SG   +A+ V  EM + G  P    Y SL++  C+   LR A+K    
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           + A   + +   YN L++   + G +  A+ LF  M+++ + PD+ TYTSL+ GLC++  
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 663

Query: 521 LQAAFEVFNKSVN--HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
              A  +F K      +V+  + + + F+  + + G +  A    R    +LGH+
Sbjct: 664 TVIAI-LFAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHT 716



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 113/594 (19%), Positives = 240/594 (40%), Gaps = 51/594 (8%)

Query: 54  RVINPYLLTHHSLALGFFN-----WASQQPN----FTHSP--LSYHSILKSLSLSRQINA 102
           R+I+P  +T+++L  GF N      ASQ  N    F  SP  +++++++           
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
              +   ++   +T     Y  ++  L +      A   +  +K N   +G      ++ 
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRE 219
            L  +G++D A+ + +EMS  G++   + +   I  FC+  +     +++  +  V    
Sbjct: 412 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 220 NSMINGSVI----------------AVLIIHG--------------FCKGKRVEEAFKVL 249
           N +I  ++I                  +I+ G               CK  +V EA + +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 531

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
             +      P+ +++  +   +   G   +   V  +  K+G  P    Y   + GL   
Sbjct: 532 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKG 591

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             + EA++  + + +    +D  + N L+ ++  S +   A+  F  M+++  +P   T 
Sbjct: 592 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSA-NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           ++L   LC++ K+   +   K   A  +   +   Y   V  +  +G+ +      ++M 
Sbjct: 652 TSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMD 711

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G  PD+   N++++   R   +     L  +M       NL TYNIL+  +S+  ++ 
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +  L+ +++  G+ PD  T  SL+ G+C+   L+   ++    +   V + R   +  +
Sbjct: 772 TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 831

Query: 548 ISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
              C  G    A  L++     G+S D    D+ V +L      +E  M +  +
Sbjct: 832 SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/300 (19%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + ++  F  M   G  P++ T + +  ++ K  +   +    K +       D+ ++N++
Sbjct: 140 QDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 199

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC  G   ++  ++Q+M++ G  P +  YN+++   C++   + A +L D M + G 
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TYN+LI        I     L  +M ++ + P+  TY +L+ G   E  +  A +
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 319

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
           + N+ ++  +       +  +      G+F  A K+   + +  G + S V   +LL  L
Sbjct: 320 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK-GLTPSEVSYGVLLDGL 378

Query: 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
               E ++A      ++ +   + +     +   L  + + +  ++LL+ + +  +D +I
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 122/578 (21%), Positives = 232/578 (40%), Gaps = 70/578 (12%)

Query: 45   DSLSPSLVAR--VINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
            D + P+ V+   +IN Y   +    L  F+   +     H P   +Y S+LK L     +
Sbjct: 537  DGILPNTVSFDCLINGY--GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 594

Query: 101  NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICN 158
               +  LK +      +D+ +Y  ++ ++ +  N  KA S+F E+      I P+     
Sbjct: 595  REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQ--RSILPDSYTYT 652

Query: 159  SLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLGQVLSML 212
            SL++ L   G    A+    E   RG      V ++    G+F        K GQ  + +
Sbjct: 653  SLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMF--------KAGQWKAGI 704

Query: 213  DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
                + +N      ++    +I G+ +  ++E+   +L E+  +   P+   Y I+   +
Sbjct: 705  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 272  KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-----------IVERRICEAKEL-- 318
                 V    ++ +     G+ P        +LG+           I++  IC   E+  
Sbjct: 765  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 319  -------------GE---------VIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFN 354
                         GE         V+ S   ++D D  +A++ SV + + R   + +  +
Sbjct: 825  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMV-SVLNRNHRFQESRMVLH 883

Query: 355  FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
             M ++G  P       L   LC+         V + + A+       + + MV  L   G
Sbjct: 884  EMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCG 943

Query: 415  RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            +  EA  +++ M +  L P ++ + +LM  CC+   +  A +L   M   G   +L +YN
Sbjct: 944  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1003

Query: 475  ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQETNLQAAFEVFNKSVN 533
            +LI+     G++  A  L+  M   G   +ATTY +L+ G L +ET    A  +      
Sbjct: 1004 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKD--- 1060

Query: 534  HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
               +LAR  +++  +S     +  +A + L+ L +D+ 
Sbjct: 1061 ---LLARGFITSMSLSQDSHRNLKMAMEKLKALQNDIA 1095



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 99/486 (20%), Positives = 192/486 (39%), Gaps = 39/486 (8%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T    +++ ++ SL  + ++   +  ++ +  + I  ++  +  +I          KAFS
Sbjct: 505 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 564

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           VF+E+             SLL  L   G++  A K    +        T+ +   +   C
Sbjct: 565 VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMC 624

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKP 259
           ++  L + +S+  E+ +R  S++  S     +I G C KGK V                 
Sbjct: 625 KSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRKGKTV----------------- 665

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             IA  + A+E +  G+V   +V+               Y  F+ G+    +        
Sbjct: 666 --IAI-LFAKEAEARGNVLPNKVM---------------YTCFVDGMFKAGQWKAGIYFR 707

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E + +   T D    NA+I   S +            M  +   P L+T + L     KR
Sbjct: 708 EQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKR 767

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                   +Y+ +  N    D  + + +V  +C S  L     +++    +G++ D   +
Sbjct: 768 KDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 827

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N L+  CC    +  A  L   M + G S +  T + ++S  +     + +  + H M +
Sbjct: 828 NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSK 887

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           +G++P++  Y  L+ GLC+  +++ AF V  + + H +       S  + +L + G    
Sbjct: 888 QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 559 ATKLLR 564
           AT LLR
Sbjct: 948 ATLLLR 953


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 199/442 (45%), Gaps = 12/442 (2%)

Query: 150 EDIGPEICNSLLAVLASDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           E  GPE   +    L  DGY     +++A ++   M       S       I   CE  +
Sbjct: 120 EACGPEATAATYGALV-DGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGR 178

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +   L +LD +  R        V   +++   CKG+   +A +++D +R   C+P+ + Y
Sbjct: 179 VADALVVLDGMLCR--GCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTY 236

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ +     G V +   +L      G  P T +Y   + G     R  +A E+ + +V 
Sbjct: 237 NVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVR 296

Query: 325 GKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                ++  LN +I ++      +   ++   M + G    + T + +   +C++   D 
Sbjct: 297 ENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDS 356

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +E+   + +     D+ +YN ++  LC++ R  +A  ++ +M +    PD S +N+++ 
Sbjct: 357 ALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIIS 416

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C++ L+  A +++ QM   GC+ N  TY+ +I   ++ G++E AL L + M  KG   
Sbjct: 417 FWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNT 476

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           D   Y  L E L +E  ++   +V +K  +  +     + +T ++ LCR G    A  +L
Sbjct: 477 D-KMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVL 535

Query: 564 RGLSSDLGHSD--SHVILLKSL 583
             + S     D  +++IL++ L
Sbjct: 536 ADMVSCGCMPDESTYIILIEGL 557



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 3/292 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A+   +FM  +G  P   T + +   +C+    D+  E+   L +     +  +YN +
Sbjct: 215 RQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTV 274

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C+  R  +A  ++ EM R+   P+ +  N ++   CR+ LL+      ++M   GC
Sbjct: 275 LKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGC 334

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N+ TYN +IS   E G ++ AL L  NM   G  PD  TY ++L+GLC     + A E
Sbjct: 335 TANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEE 394

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS--HVILLKSLA 584
           +  K   +D +   S  +T +   C++G  L A ++ + +     + +S  +  ++  L 
Sbjct: 395 LMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLT 454

Query: 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
            A ++E A+E +  +         ++   L  SL+     E ++ ++H LQ+
Sbjct: 455 KAGKMEQALELLNEMANKGFNT-DKMYRVLTESLNKEDKIEEVVQVVHKLQD 505



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 172/427 (40%), Gaps = 49/427 (11%)

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM-----INGSVIAVLIIHGFCK 238
           G E +   +G  +  +C          +L++ R+    M      + +     +IH  C+
Sbjct: 123 GPEATAATYGALVDGYCR-------AGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCE 175

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTN 297
             RV +A  VLD +  R C PD + Y I+ +     G  + + + ++   R  G  P   
Sbjct: 176 RGRVADALVVLDGMLCRGCAPDVVTYNILLQA-ACKGRGYRQALELIDFMRAEGCEPNNV 234

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            Y   I  +  E  + +A+EL                                   N + 
Sbjct: 235 TYNVIIDAMCREGDVDQAREL----------------------------------LNSLP 260

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            +G  P     + + K  C   +  +  E+   +   +   +  + NV+++ LC  G L+
Sbjct: 261 SRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQ 320

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +    +++M + G   +V  YN+++   C +  +  A +L   M + GC  ++ TYN ++
Sbjct: 321 KVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVL 380

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                    E A  L   M +    PD +T+ +++   CQ+  +  AFEVF +       
Sbjct: 381 KGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCN 440

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-HVILLKSLADAREVEMAIEHI 596
              +  ST +  L + G    A +LL  +++   ++D  + +L +SL    ++E  ++ +
Sbjct: 441 PNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVV 500

Query: 597 KWIQESS 603
             +Q+S 
Sbjct: 501 HKLQDSG 507



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 90/186 (48%), Gaps = 5/186 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++LK L  + +    + ++ ++  N    D+S +  II    Q     +AF VF +
Sbjct: 374 VTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQ 433

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +      ++++  L   G ++ AL++ +EM+++G     + + V      +  K
Sbjct: 434 MPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDK 492

Query: 205 LGQVLSMLDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + +V+ +   V K ++S I+  +V+   ++ G C+  + + A  VL ++    C PD   
Sbjct: 493 IEEVVQV---VHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDEST 549

Query: 264 YRIVAE 269
           Y I+ E
Sbjct: 550 YIILIE 555


>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/549 (22%), Positives = 241/549 (43%), Gaps = 40/549 (7%)

Query: 8   DLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLA 67
           D+A  +S       +  R  R W P +   L++L     ++P LVA V+   + T   + 
Sbjct: 81  DIAKNLSPIARYICDSFRKHRNWGPPVVADLNKL---RRVTPVLVAEVLK--VQTDPVIC 135

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
             FF+WA +Q  + H+  SY++    L+ S Q  A D V + + +         +  +I 
Sbjct: 136 SKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEKQFEILIR 195

Query: 128 SLIQGKNTQKAFSVFNEV-KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG 184
             I      + + V+ ++ KF    I P +   N ++  L   G++D A+ ++++    G
Sbjct: 196 MHIDANRGLRVYYVYEKMKKFG---IKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDG 252

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKR 241
           +   ++ + + +   C+  ++ +VL +LD +R    + +     +++ VL+  G   G  
Sbjct: 253 LVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAMVKVLVAEGNLDG-- 310

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTND 298
                +V +E+R  + +PD +AY  +         +G  FE    +K+K+ L        
Sbjct: 311 ---CLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYL---IDRAI 364

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   I G +V  R+  A +L + ++   +  D  + N+LI  + ++     A   F   +
Sbjct: 365 YGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTV 424

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RL 416
            +   P   T+  +  +  +  + D+   +   +     F  ++  +   S +   G RL
Sbjct: 425 HESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLG-FPVIDDLSKFFSVMIEKGERL 483

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           + A  V + +K KG    +S YN LMEA  R   ++ A  L+D +  S    +  TY+  
Sbjct: 484 KLALEVFEHLKAKGY-CSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNA 542

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F EVG+++ A   ++ ++E    P    Y SL++GLC+   + AA           +
Sbjct: 543 IICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAA-----------I 591

Query: 537 MLARSILST 545
           ML R  L+ 
Sbjct: 592 MLVRDCLAN 600



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN ++  L  +G L  A  V ++ K  GL  +   Y  L++  C+   +    +L D+M 
Sbjct: 225 YNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMR 284

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            + C  ++  Y  ++      G ++G LR++  M +  V PD   YT+L+  LC    + 
Sbjct: 285 GNLCKPDVFAYTAMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVG 344

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHV 577
             FE+F +      ++ R+I  + +           A  LL+     G  +DL   +S  
Sbjct: 345 EGFELFKEMKQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNS-- 402

Query: 578 ILLKSLADAREVEMA 592
            L++ + + ++V+ A
Sbjct: 403 -LIEGMCNVKQVDKA 416



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K+KG   + + YN+      R +  R A ++ + M   G   + K + ILI    +    
Sbjct: 144 KQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEKQFEILIRMHIDANRG 203

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
                ++  M + G+ P    Y  +++GL +  +L  A  V+ +    D ++  S+  T+
Sbjct: 204 LRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVY-EDFKEDGLVEESV--TY 260

Query: 547 MI---SLCRRGHFLVATKLLRGLSSDLGHSD 574
           MI    LC+ G      +LL  +  +L   D
Sbjct: 261 MILVKGLCKAGRIDEVLELLDRMRGNLCKPD 291


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/560 (22%), Positives = 226/560 (40%), Gaps = 92/560 (16%)

Query: 47  LSPSLVARVIN-----PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           L+PS+ A  +      P      + AL FF W +++P F H+  S+ ++L+ L+  R   
Sbjct: 46  LAPSVTAAHVADLFRAPVAPLDPATALAFFEWVARRPGFRHTAASHAALLQLLARRRA-- 103

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
                             + Y  ++ S++   +T              ED+  E  +++ 
Sbjct: 104 -----------------PANYDKLVVSMVSCSDTA-------------EDM-REAVDAIQ 132

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           A+    G +  A  +   M   G   +   + + I   CE   + + L +L  V   ++ 
Sbjct: 133 AIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLL--VMMVQDG 190

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
                    L+I G CK  R+  A +VL+E+ +R   P    Y  + + +   G      
Sbjct: 191 CSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSG------ 244

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
              + K  LG+              ++ER  C                DD   N LI  +
Sbjct: 245 ---RMKDALGIKA------------LMERNGCNP--------------DDWTYNILIYGL 275

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
               P  A    N  I +G  PT+ T +N+    CK  + D+ + V   + +++   D++
Sbjct: 276 CGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQ 335

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y V+++ L    R +EA   + EM   GL P+V  Y S+++  C+   +  A +++  M
Sbjct: 336 AYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLM 395

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC  N  TY+ LI    +  ++  A+ L   M E G+ P   TYT+L++G C++   
Sbjct: 396 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 455

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH------FLV----------ATKLLRG 565
             AF +F     + +       +    +LC+ G       FLV           T L+ G
Sbjct: 456 DNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDG 515

Query: 566 LSSDLGHSDSHVILLKSLAD 585
            S   G++D   +L++ + +
Sbjct: 516 FSK-AGNTDFAAVLIEKMVN 534



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 199/490 (40%), Gaps = 23/490 (4%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            FT + +++ +I+     + +I+    V   +  +   LD   Y  +I  LI+    ++A
Sbjct: 294 GFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEA 353

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
               +E+  N       I  S++      G +  AL++F  M H G   +   +   I+ 
Sbjct: 354 KETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYG 413

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             ++ KL + ++++   + +E+ +  G +    +I G CK    + AF++ + +      
Sbjct: 414 LIQDQKLHKAMALI--TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLT 471

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD  AY ++       G   E    L +K   GV      Y   + G         A  L
Sbjct: 472 PDEQAYNVLTHALCKSGRAEEAYSFLVRK---GVVLTKVTYTSLVDGFSKAGNTDFAAVL 528

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E +V+     D    + L+ ++        A+   + M   G    +   + +   + K
Sbjct: 529 IEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIK 588

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             K D    ++  + ++ +     +Y V +S  C  G++ EA  +I EM+R G+ PDV  
Sbjct: 589 EGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVT 648

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG------------- 484
           YN  +  C     +  A     +M  + C  N  TY IL+  F ++              
Sbjct: 649 YNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMW 708

Query: 485 ---EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
              E++   +L   M++ G+ P A TY+S++ G C+ T L+ A  +F+     D+     
Sbjct: 709 NWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEE 768

Query: 542 ILSTFMISLC 551
           I  T +I  C
Sbjct: 769 IY-TMLIKCC 777



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 207/526 (39%), Gaps = 61/526 (11%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y SI+       ++ A   V + ++      ++  Y  +I  LIQ +   KA ++  +++
Sbjct: 372 YTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQ 431

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL- 205
            +    G     +L+         DNA ++F+ M   G+      + V     C++ +  
Sbjct: 432 EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAE 491

Query: 206 ---------GQVL------SMLDEVRKRENS---------MIN-----GSVIAVLIIHGF 236
                    G VL      S++D   K  N+         M+N      S    +++   
Sbjct: 492 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQAL 551

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK K++ EA  +LD++ +   K + +AY I+  E    G     + +  +    G  P  
Sbjct: 552 CKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSA 611

Query: 297 NDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
             Y  FI       +I EA+ L GE+   G   +  DV+             +  VF N 
Sbjct: 612 TTYTVFISSYCKIGQIEEAEHLIGEMERDG---VAPDVV-------------TYNVFING 655

Query: 356 MIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
               G +    STL  +    C+ N     + +   L      + ++++ V  S +    
Sbjct: 656 CGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLK----MSLVDAHYVDTSGMWNWI 711

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L   + +++ M + GL+P    Y+S++   C+   L  A  L+D M     S N + Y 
Sbjct: 712 ELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYT 771

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----- 529
           +LI    ++     A+    +M+E G  P   +Y  L+ GLC E +   A  +F      
Sbjct: 772 MLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGM 831

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           +  NH+  +A  IL+     L + GH    ++LL  + +     DS
Sbjct: 832 EDYNHN-EVAWKILND---GLLKAGHVDFCSQLLSAMENRHCQIDS 873


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 134/570 (23%), Positives = 232/570 (40%), Gaps = 59/570 (10%)

Query: 61  LTHHSLALGFFNWASQQPNF------------TH--------SPLSYHSILKSLSL---- 96
           L H  LAL F  W  +QP              TH         P  +  ILK LSL    
Sbjct: 87  LVHGKLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARH--ILKELSLMSGK 144

Query: 97  -SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
            S    A+ +  +    N      SVY  +I   ++    Q +  +F  +     +    
Sbjct: 145 SSFVFGALMTTYRLCNSN-----PSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVY 199

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN++L  +   G   +      EM  R +      F + I   C      +   ++   
Sbjct: 200 TCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM--- 256

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +K E S    +++    ++H +CK  R + A ++LD ++ +    D   Y ++  +    
Sbjct: 257 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 316

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             + +  ++L+  RK  + P    Y   I G   E ++  A +L   ++S   + +    
Sbjct: 317 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 376

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NALI G +S  + + A+  F  M  KG  P+  +   L   LCK  + D     Y  +  
Sbjct: 377 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 436

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           N       +Y  M+  LC +G L EA  ++ EM + G+DPD+  Y++L+   C+    + 
Sbjct: 437 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKT 496

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK++  +++  G S N   Y+ LI     +G ++ A+R++  M+ +G   D  T+  L+ 
Sbjct: 497 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVT 556

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSI---------------LSTFMI--SLCRRGH- 555
            LC+   +  A E F + +  D +L  ++               L  F +   + + GH 
Sbjct: 557 SLCKAGKVAEA-EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH 615

Query: 556 --FLVATKLLRGLSSDLGHSDSHVILLKSL 583
             F     LL+GL    GH       LKSL
Sbjct: 616 PTFFTYGSLLKGLCKG-GHLREAEKFLKSL 644



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 223/535 (41%), Gaps = 75/535 (14%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  +  + ++Y+++L       +  A   +L  +K   +  D   Y  +I  L +    
Sbjct: 260 EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI 319

Query: 136 QKAFSVF----------NEVKFNCED----------IGPEICNSLLAVLAS--------- 166
            K + +           NEV +N             I  ++ N +L+   S         
Sbjct: 320 AKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNAL 379

Query: 167 -DGYIDN-----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            DG+I       ALKMF  M  +G+  S + +GV +   C+NA+    L+    +R + N
Sbjct: 380 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFD--LARGFYMRMKRN 437

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +  G +    +I G CK   ++EA  +L+E+      PD + Y  +   F  +G     
Sbjct: 438 GVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTA 497

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + ++ +  ++G++P          G+I    I     +G +                   
Sbjct: 498 KEIVCRIYRVGLSPN---------GIIYSTLIYNCCRMGCL------------------- 529

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                 + AI  +  MI +G      T + L  +LCK  K  E  E  + ++++    + 
Sbjct: 530 ------KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 583

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            S++ +++    SG   +A+ V  EM + G  P    Y SL++  C+   LR A+K    
Sbjct: 584 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 643

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           + A   + +   YN L++   + G +  A+ LF  M+++ + PD+ TYTSL+ GLC++  
Sbjct: 644 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 703

Query: 521 LQAAFEVFNKSVN--HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
              A  +F K      +V+  + + + F+  + + G +  A    R    +LGH+
Sbjct: 704 TVIAI-LFAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHT 756



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 113/594 (19%), Positives = 240/594 (40%), Gaps = 51/594 (8%)

Query: 54  RVINPYLLTHHSLALGFFN-----WASQQPN----FTHSP--LSYHSILKSLSLSRQINA 102
           R+I+P  +T+++L  GF N      ASQ  N    F  SP  +++++++           
Sbjct: 332 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 391

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
              +   ++   +T     Y  ++  L +      A   +  +K N   +G      ++ 
Sbjct: 392 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 451

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRE 219
            L  +G++D A+ + +EMS  G++   + +   I  FC+  +     +++  +  V    
Sbjct: 452 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 511

Query: 220 NSMINGSVI----------------AVLIIHG--------------FCKGKRVEEAFKVL 249
           N +I  ++I                  +I+ G               CK  +V EA + +
Sbjct: 512 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 571

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
             +      P+ +++  +   +   G   +   V  +  K+G  P    Y   + GL   
Sbjct: 572 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKG 631

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             + EA++  + + +    +D  + N L+ ++  S +   A+  F  M+++  +P   T 
Sbjct: 632 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 691

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSA-NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           ++L   LC++ K+   +   K   A  +   +   Y   V  +  +G+ +      ++M 
Sbjct: 692 TSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMD 751

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G  PD+   N++++   R   +     L  +M       NL TYNIL+  +S+  ++ 
Sbjct: 752 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 811

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +  L+ +++  G+ PD  T  SL+ G+C+   L+   ++    +   V + R   +  +
Sbjct: 812 TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 871

Query: 548 ISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
              C  G    A  L++     G+S D    D+ V +L      +E  M +  +
Sbjct: 872 SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 925



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/302 (18%), Positives = 135/302 (44%), Gaps = 8/302 (2%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + ++  F  M   G  P++ T + +  ++ K  +   +    K +       D+ ++N++
Sbjct: 180 QDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 239

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC  G   ++  ++Q+M++ G  P +  YN+++   C++   + A +L D M + G 
Sbjct: 240 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 299

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TYN+LI        I     L  +M ++ + P+  TY +L+ G   E  +  A +
Sbjct: 300 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 359

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLK 581
           + N+ ++  +       +  +      G+F  A K+      +GL+       S+ +LL 
Sbjct: 360 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS---EVSYGVLLD 416

Query: 582 SLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641
            L    E ++A      ++ +   + +     +   L  + + +  ++LL+ + +  +D 
Sbjct: 417 GLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 476

Query: 642 EI 643
           +I
Sbjct: 477 DI 478



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 122/576 (21%), Positives = 231/576 (40%), Gaps = 70/576 (12%)

Query: 45   DSLSPSLVAR--VINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
            D + P+ V+   +IN Y   +    L  F+   +     H P   +Y S+LK L     +
Sbjct: 577  DGILPNTVSFDCLINGY--GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 634

Query: 101  NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICN 158
               +  LK +      +D+ +Y  ++ ++ +  N  KA S+F E+      I P+     
Sbjct: 635  REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQ--RSILPDSYTYT 692

Query: 159  SLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLGQVLSML 212
            SL++ L   G    A+    E   RG      V ++    G+F        K GQ  + +
Sbjct: 693  SLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMF--------KAGQWKAGI 744

Query: 213  DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
                + +N      ++    +I G+ +  ++E+   +L E+  +   P+   Y I+   +
Sbjct: 745  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 804

Query: 272  KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-----------IVERRICEAKEL-- 318
                 V    ++ +     G+ P        +LG+           I++  IC   E+  
Sbjct: 805  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 864

Query: 319  -------------GE---------VIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFN 354
                         GE         V+ S   ++D D  +A++ SV + + R   + +  +
Sbjct: 865  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMV-SVLNRNHRFQESRMVLH 923

Query: 355  FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
             M ++G  P       L   LC+         V + + A+       + + MV  L   G
Sbjct: 924  EMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCG 983

Query: 415  RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            +  EA  +++ M +  L P ++ + +LM  CC+   +  A +L   M   G   +L +YN
Sbjct: 984  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1043

Query: 475  ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQETNLQAAFEVFNKSVN 533
            +LI+     G++  A  L+  M   G   +ATTY +L+ G L +ET    A  +      
Sbjct: 1044 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKD--- 1100

Query: 534  HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
               +LAR  +++  +S     +  +A + L+ L S+
Sbjct: 1101 ---LLARGFITSMSLSQDSHRNLKMAMEKLKALQSN 1133



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 99/486 (20%), Positives = 192/486 (39%), Gaps = 39/486 (8%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T    +++ ++ SL  + ++   +  ++ +  + I  ++  +  +I          KAFS
Sbjct: 545 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 604

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           VF+E+             SLL  L   G++  A K    +        T+ +   +   C
Sbjct: 605 VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMC 664

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKP 259
           ++  L + +S+  E+ +R  S++  S     +I G C KGK V                 
Sbjct: 665 KSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRKGKTV----------------- 705

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             IA  + A+E +  G+V   +V+               Y  F+ G+    +        
Sbjct: 706 --IAI-LFAKEAEARGNVLPNKVM---------------YTCFVDGMFKAGQWKAGIYFR 747

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E + +   T D    NA+I   S +            M  +   P L+T + L     KR
Sbjct: 748 EQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKR 807

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                   +Y+ +  N    D  + + +V  +C S  L     +++    +G++ D   +
Sbjct: 808 KDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 867

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N L+  CC    +  A  L   M + G S +  T + ++S  +     + +  + H M +
Sbjct: 868 NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSK 927

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           +G++P++  Y  L+ GLC+  +++ AF V  + + H +       S  + +L + G    
Sbjct: 928 QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 987

Query: 559 ATKLLR 564
           AT LLR
Sbjct: 988 ATLLLR 993


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 121/529 (22%), Positives = 233/529 (44%), Gaps = 58/529 (10%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPS 128
            F  A +  +F     +  S+++S + S   ++++ +L ++++ N++ ++ S   FI+  
Sbjct: 63  MFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERS---FIVVF 119

Query: 129 LIQGKN--TQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
              GK     KA  +F+ +  +F C+       NS+L V+ ++G     L+ +D + +  
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSF-NSVLNVIINEGLYHRGLEFYDYVVNSN 178

Query: 185 VEFST----IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
           +  +     + F + I   C+   + + + +   + +R+  + +G     L+  G CK +
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK-CLPDGYTYCTLM-DGLCKEE 236

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R++EA  +LDE++   C P  + Y ++ +     G +     ++      G  P    Y 
Sbjct: 237 RIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYN 296

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             I GL ++ ++ +A  L E +VS K   +D     LI G V       A+   + M E+
Sbjct: 297 TLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G        S L   L K  K++E + +++ ++      ++  Y+V+V  LC  G+  EA
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++  M   G  P+   Y+SLM+   +  L   A ++W +M  +GCS N   Y++LI  
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476

Query: 480 FSEVGEI-----------------------------------EGALRLFHNML---EKGV 501
              VG +                                   + AL+L+H ML   E   
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKS 536

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTF 546
            PD  TY  LL+GLC + ++  A ++ N    +  + DV+   + L+T 
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 181/414 (43%), Gaps = 28/414 (6%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           +  +I +L + +   +A  VF  + +  C   G   C +L+  L  +  ID A+ + DEM
Sbjct: 190 FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYC-TLMDGLCKEERIDEAVLLLDEM 248

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   S + + V I   C+   L +V  ++D +  +    +   V    +IHG C   
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK--GCVPNEVTYNTLIHGLCLKG 306

Query: 241 RVEEAFKVLDELRIRECKPDFIAY----------RIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++++A  +L+ +   +C P+ + Y          R   +  +L+ S+ ER          
Sbjct: 307 KLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER---------- 356

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G     + Y   I GL  E +  EA  L   +       +  V + L+ G      P  A
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               N MI  G +P   T S+L K   K    +E V+V+K +       +   Y+V++  
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GC 466
           LC  GR++EA  V  +M   G+ PD   Y+S+++  C    +  A KL+ +M        
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKS 536

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
             ++ TYNIL+       +I  A+ L ++ML++G  PD  T  + L  L +++N
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSN 590


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 134/570 (23%), Positives = 232/570 (40%), Gaps = 59/570 (10%)

Query: 61  LTHHSLALGFFNWASQQPNF------------TH--------SPLSYHSILKSLSL---- 96
           L H  LAL F  W  +QP              TH         P  +  ILK LSL    
Sbjct: 47  LVHGKLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARH--ILKELSLMSGK 104

Query: 97  -SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
            S    A+ +  +    N      SVY  +I   ++    Q +  +F  +     +    
Sbjct: 105 SSFVFGALMTTYRLCNSN-----PSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVY 159

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN++L  +   G   +      EM  R +      F + I   C      +   ++   
Sbjct: 160 TCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM--- 216

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +K E S    +++    ++H +CK  R + A ++LD ++ +    D   Y ++  +    
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
             + +  ++L+  RK  + P    Y   I G   E ++  A +L   ++S   + +    
Sbjct: 277 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NALI G +S  + + A+  F  M  KG  P+  +   L   LCK  + D     Y  +  
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           N       +Y  M+  LC +G L EA  ++ EM + G+DPD+  Y++L+   C+    + 
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKT 456

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK++  +++  G S N   Y+ LI     +G ++ A+R++  M+ +G   D  T+  L+ 
Sbjct: 457 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVT 516

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSI---------------LSTFMI--SLCRRGH- 555
            LC+   +  A E F + +  D +L  ++               L  F +   + + GH 
Sbjct: 517 SLCKAGKVAEA-EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH 575

Query: 556 --FLVATKLLRGLSSDLGHSDSHVILLKSL 583
             F     LL+GL    GH       LKSL
Sbjct: 576 PTFFTYGSLLKGLCKG-GHLREAEKFLKSL 604



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 223/535 (41%), Gaps = 75/535 (14%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  +  + ++Y+++L       +  A   +L  +K   +  D   Y  +I  L +    
Sbjct: 220 EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI 279

Query: 136 QKAFSVF----------NEVKFNCED----------IGPEICNSLLAVLAS--------- 166
            K + +           NEV +N             I  ++ N +L+   S         
Sbjct: 280 AKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNAL 339

Query: 167 -DGYIDN-----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            DG+I       ALKMF  M  +G+  S + +GV +   C+NA+    L+    +R + N
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFD--LARGFYMRMKRN 397

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +  G +    +I G CK   ++EA  +L+E+      PD + Y  +   F  +G     
Sbjct: 398 GVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTA 457

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + ++ +  ++G++P          G+I    I     +G +                   
Sbjct: 458 KEIVCRIYRVGLSPN---------GIIYSTLIYNCCRMGCL------------------- 489

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                 + AI  +  MI +G      T + L  +LCK  K  E  E  + ++++    + 
Sbjct: 490 ------KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 543

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            S++ +++    SG   +A+ V  EM + G  P    Y SL++  C+   LR A+K    
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           + A   + +   YN L++   + G +  A+ LF  M+++ + PD+ TYTSL+ GLC++  
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 663

Query: 521 LQAAFEVFNKSVN--HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
              A  +F K      +V+  + + + F+  + + G +  A    R    +LGH+
Sbjct: 664 TVIAI-LFAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHT 716



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 113/594 (19%), Positives = 240/594 (40%), Gaps = 51/594 (8%)

Query: 54  RVINPYLLTHHSLALGFFN-----WASQQPN----FTHSP--LSYHSILKSLSLSRQINA 102
           R+I+P  +T+++L  GF N      ASQ  N    F  SP  +++++++           
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
              +   ++   +T     Y  ++  L +      A   +  +K N   +G      ++ 
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRE 219
            L  +G++D A+ + +EMS  G++   + +   I  FC+  +     +++  +  V    
Sbjct: 412 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 220 NSMINGSVI----------------AVLIIHG--------------FCKGKRVEEAFKVL 249
           N +I  ++I                  +I+ G               CK  +V EA + +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 531

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
             +      P+ +++  +   +   G   +   V  +  K+G  P    Y   + GL   
Sbjct: 532 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKG 591

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTL 368
             + EA++  + + +    +D  + N L+ ++  S +   A+  F  M+++  +P   T 
Sbjct: 592 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSA-NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           ++L   LC++ K+   +   K   A  +   +   Y   V  +  +G+ +      ++M 
Sbjct: 652 TSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMD 711

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
             G  PD+   N++++   R   +     L  +M       NL TYNIL+  +S+  ++ 
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +  L+ +++  G+ PD  T  SL+ G+C+   L+   ++    +   V + R   +  +
Sbjct: 772 TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 831

Query: 548 ISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
              C  G    A  L++     G+S D    D+ V +L      +E  M +  +
Sbjct: 832 SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/300 (19%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + ++  F  M   G  P++ T + +  ++ K  +   +    K +       D+ ++N++
Sbjct: 140 QDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 199

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC  G   ++  ++Q+M++ G  P +  YN+++   C++   + A +L D M + G 
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TYN+LI        I     L  +M ++ + P+  TY +L+ G   E  +  A +
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 319

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
           + N+ ++  +       +  +      G+F  A K+   + +  G + S V   +LL  L
Sbjct: 320 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK-GLTPSEVSYGVLLDGL 378

Query: 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
               E ++A      ++ +   + +     +   L  + + +  ++LL+ + +  +D +I
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 124/581 (21%), Positives = 232/581 (39%), Gaps = 80/581 (13%)

Query: 45   DSLSPSLVAR--VINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
            D + P+ V+   +IN Y   +    L  F+   +     H P   +Y S+LK L     +
Sbjct: 537  DGILPNTVSFDCLINGY--GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 594

Query: 101  NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICN 158
               +  LK +      +D+ +Y  ++ ++ +  N  KA S+F E+      I P+     
Sbjct: 595  REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQ--RSILPDSYTYT 652

Query: 159  SLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLGQVLSML 212
            SL++ L   G    A+    E   RG      V ++    G+F        K GQ  + +
Sbjct: 653  SLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMF--------KAGQWKAGI 704

Query: 213  DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
                + +N      ++    +I G+ +  ++E+   +L E+  +   P+   Y I+   +
Sbjct: 705  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 272  KLMGSV-----FEREVVLKKKRKLGVAPRTNDYREFILGL-----------IVERRICEA 315
                 V       R ++L      G+ P        +LG+           I++  IC  
Sbjct: 765  SKRKDVSTSFLLYRSIILN-----GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRG 819

Query: 316  KEL---------------GE---------VIVSGKFTIDDDVLNALIGSVSSIDPR--SA 349
             E+               GE         V+ S   ++D D  +A++ SV + + R   +
Sbjct: 820  VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMV-SVLNRNHRFQES 878

Query: 350  IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
             +  + M ++G  P       L   LC+         V + + A+       + + MV  
Sbjct: 879  RMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRA 938

Query: 410  LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            L   G+  EA  +++ M +  L P ++ + +LM  CC+   +  A +L   M   G   +
Sbjct: 939  LAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLD 998

Query: 470  LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQETNLQAAFEVF 528
            L +YN+LI+     G++  A  L+  M   G   +ATTY +L+ G L +ET    A  + 
Sbjct: 999  LVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIIL 1058

Query: 529  NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
                    +LAR  +++  +S     +  +A + L+ L S+
Sbjct: 1059 KD------LLARGFITSMSLSQDSHRNLKMAMEKLKALQSN 1093



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 99/486 (20%), Positives = 192/486 (39%), Gaps = 39/486 (8%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T    +++ ++ SL  + ++   +  ++ +  + I  ++  +  +I          KAFS
Sbjct: 505 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 564

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           VF+E+             SLL  L   G++  A K    +        T+ +   +   C
Sbjct: 565 VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMC 624

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKP 259
           ++  L + +S+  E+ +R  S++  S     +I G C KGK V                 
Sbjct: 625 KSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRKGKTV----------------- 665

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             IA  + A+E +  G+V   +V+               Y  F+ G+    +        
Sbjct: 666 --IAI-LFAKEAEARGNVLPNKVM---------------YTCFVDGMFKAGQWKAGIYFR 707

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E + +   T D    NA+I   S +            M  +   P L+T + L     KR
Sbjct: 708 EQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKR 767

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                   +Y+ +  N    D  + + +V  +C S  L     +++    +G++ D   +
Sbjct: 768 KDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 827

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N L+  CC    +  A  L   M + G S +  T + ++S  +     + +  + H M +
Sbjct: 828 NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSK 887

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           +G++P++  Y  L+ GLC+  +++ AF V  + + H +       S  + +L + G    
Sbjct: 888 QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 559 ATKLLR 564
           AT LLR
Sbjct: 948 ATLLLR 953


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 203/455 (44%), Gaps = 16/455 (3%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +S++SIL  L   R+++   ++ + +K +    +SS Y  II  L      ++A+ + 
Sbjct: 356 SVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIR 414

Query: 143 NEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E++     + P +   N ++  L      + A +MF+  S RG   +++ +   I    
Sbjct: 415 DEMEH--AGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLI---- 468

Query: 201 ENAKLGQVLSMLDEVRKRENSMING----SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
               LG+  ++ D  R  EN +  G     V+   +I  F    R E+  K+  E+  R 
Sbjct: 469 --DGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRG 526

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C+PD        +     G V +   + +  +  G  P    Y   I GL    +  E  
Sbjct: 527 CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETS 586

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            +   +    F +D    NA++ G   S     A      M  K   PT++T  ++   L
Sbjct: 587 SIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++EM +KGL P+V
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 706

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             +NSLM+A  + + +  A   +  M    CS N  TY+ILI+    V +   A   +  
Sbjct: 707 YTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQE 766

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           M ++G+ P+  TYT+++ GL +  N+  A  +F +
Sbjct: 767 MQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFER 801



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 214/491 (43%), Gaps = 11/491 (2%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF+    Q       +SY S++  L  + +++  + +  Q++  +    +  Y  +
Sbjct: 270 MAWKFFHELKSQ-GLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTM 328

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I         + A+ + +++K       P +   NS+L  L     +D AL +F+ M  +
Sbjct: 329 IMGYGSAGQFENAYKLLDQLKE--RGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-K 385

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
             E ++  + + I   C   K+ +   + DE+   E++ +  +++ V +++   CK K+ 
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEM---EHAGLFPNLLTVNIMVDRLCKAKKF 442

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           E A+++ +    R C P+ + Y  + +     G+V +   + +     G       Y   
Sbjct: 443 EPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSL 502

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGR 361
           I    +  R  +  ++ + +       D  +LN  +  V  + D       F  +   G 
Sbjct: 503 IRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGF 562

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P + + S L   L K  ++ E   ++  +    +  D  +YN +V   C SG+L +AY 
Sbjct: 563 LPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYE 622

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V++EMK K + P V+ Y S+++   + D L  A  L+++  + G   N+  Y+ LI  F 
Sbjct: 623 VLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFG 682

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +VG I+ A  +   M++KG+ P+  T+ SL++ L +   +  A   F             
Sbjct: 683 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTY 742

Query: 542 ILSTFMISLCR 552
             S  +  LCR
Sbjct: 743 TYSILINGLCR 753



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 182/399 (45%), Gaps = 4/399 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  L++ L     +D+A ++   M       +   + V I    E  +  + L +L +++
Sbjct: 150 CADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQ 209

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             E     G  +   ++    +  RVE A  ++DE++    +PD + Y +  + F   G+
Sbjct: 210 --EVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN 267

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V        + +  G+ P    Y   I  L    R+ EA+EL   + + +        N 
Sbjct: 268 VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNT 327

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           +I G  S+    +A    + + E+G +P++ + +++   L K+ K DE + +++ +   D
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-KD 386

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +YN+++  LC +G++ EAY +  EM+  GL P++   N +++  C+     PA 
Sbjct: 387 AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAY 446

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           ++++     GC+ N  TY  LI    + G ++ A RLF NML+ G   +   YTSL+   
Sbjct: 447 EMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNF 506

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
                 +   ++F +          ++L+T+M  + + G
Sbjct: 507 FMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAG 545



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/457 (19%), Positives = 210/457 (45%), Gaps = 12/457 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +P F+    +Y  ++ +++ +RQ      +L+Q++     +   ++  ++ +L +    +
Sbjct: 179 RPAFS----AYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVE 234

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A ++ +EVK +C +    + N  +      G +D A K F E+  +G++   + +   I
Sbjct: 235 GALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMI 294

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           W  C+  +L +   +  ++ + E ++        +I+ G+    + E A+K+LD+L+ R 
Sbjct: 295 WVLCKAGRLSEAEELFGQM-ETERAVPCAYAYNTMIM-GYGSAGQFENAYKLLDQLKERG 352

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P  +++  +         V E   + +  +K    P ++ Y   I  L +  ++ EA 
Sbjct: 353 CIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAY 411

Query: 317 EL-GEVIVSGKFT--IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            +  E+  +G F   +  +++   +      +P  A   F    ++G  P   T  +L  
Sbjct: 412 MIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEP--AYEMFETASQRGCNPNSVTYCSLID 469

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            L K+   D+   +++ +    +  +   Y  ++      GR  + + + +EM R+G  P
Sbjct: 470 GLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQP 529

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D++  N+ M+   +   +   + +++ +   G   ++++Y+ILI   ++ G+      +F
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           H M ++G A DA  Y ++++G C+   L  A+EV  +
Sbjct: 590 HAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE 626



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 42/417 (10%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           +S  Y  +I  L +  N   A+ +F  +     +  P +  SL+      G  ++  K+F
Sbjct: 460 NSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIF 519

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM+ RG +        ++    +   + +  ++ ++++      +       ++IHG  
Sbjct: 520 KEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY--GFLPDVRSYSILIHGLT 577

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K  +  E   +   ++ +    D  AY  V + F   G + +   VL++ +   V P   
Sbjct: 578 KAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVA 637

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFN 354
            Y   I GL    R+ EA  L E   S    ++  V ++LI   G V  ID   A +   
Sbjct: 638 TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID--EAYLILE 695

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M++KG  P + T ++L   L K  + +E +  ++ +       +  +Y+++++ LC   
Sbjct: 696 EMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQ 755

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A+   QEM+++GL P+V                                    TY 
Sbjct: 756 KYNKAFVFWQEMQKQGLVPNVV-----------------------------------TYT 780

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            +I+  ++VG I  A  LF      G  PDA ++ +L+EG+        A+ VF ++
Sbjct: 781 TMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEET 837



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%)

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           ++L   L +  + D+   V   +    +     +Y V++  +  + +   A  ++++M+ 
Sbjct: 151 ADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G +  V  + +L+ A  RE  +  A  L D++  S    ++  YN+ I  F + G ++ 
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A + FH +  +G+ PD  +YTS++  LC+   L  A E+F +      +      +T ++
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIM 330

Query: 549 SLCRRGHFLVATKLLRGL 566
                G F  A KLL  L
Sbjct: 331 GYGSAGQFENAYKLLDQL 348



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/247 (18%), Positives = 109/247 (44%), Gaps = 2/247 (0%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A +Q  F     +Y++++     S +++    VL+++KV ++    + Y  II  L +  
Sbjct: 591 AMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKID 650

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
              +A+ +F E K    ++   + +SL+      G ID A  + +EM  +G+  +   + 
Sbjct: 651 RLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 710

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +    +  ++ + L     +++ + S    +    ++I+G C+ ++  +AF    E++
Sbjct: 711 SLMDALVKAEEINEALICFQSMKEMKCS--PNTYTYSILINGLCRVQKYNKAFVFWQEMQ 768

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +   P+ + Y  +      +G++ +   + ++ +  G  P    +   I G+    R  
Sbjct: 769 KQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAI 828

Query: 314 EAKELGE 320
           EA  + E
Sbjct: 829 EAYHVFE 835


>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/529 (20%), Positives = 231/529 (43%), Gaps = 47/529 (8%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYR 123
           S AL  F WAS    FTHS  +Y +++  L + R+ + +  +L ++  +        ++ 
Sbjct: 52  SEALQTFRWASTFSKFTHSQSTYRTLIHKLCIFRRFDTVKQLLDEMPTSIGANPGEDIFI 111

Query: 124 FIIPSLIQGKNTQKAFSVFN-EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE-MS 181
            I+  L +   T++  +V +   KF+      +I NS+L VL  +  ID A + + + M 
Sbjct: 112 TIVRGLSRAGMTRRVITVLDLAYKFHGTP-SLKIFNSILDVLVKED-IDMAREFYRKSMM 169

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             GV      FG+ +   C   ++G+   +L  ++   N +   +VI   ++H  C+  +
Sbjct: 170 ESGVRGDDYTFGILMKGLCLTNRIGEGFKLLQLIKN--NGVTPNTVIYNTLLHALCRNGK 227

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V  A  +++E+      P+ + + I+   +    ++ +  V+L+K   L + P      +
Sbjct: 228 VGRARSLMNEM----VDPNEVTFNILISSYYKEENLVQALVLLEKCFALSLVPDVVTVTK 283

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKG 360
            +  L    R+ EA E+ E + S   ++D    N LI     +   +  + F   M  KG
Sbjct: 284 VVEILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGFCGVGKVKVGLHFLKQMENKG 343

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P + T + L    C+    D  ++++  +  +    +  +++ M+  LC+ GR+ + +
Sbjct: 344 YLPNVDTYNILIYGFCESRMLDLALDLFNDMKTDGINRNFVTFDTMIRGLCSEGRIEDGF 403

Query: 421 GVIQEMK--RKGLDPDVSFYNSLMEAC--------------------------------- 445
            +++ M+  ++G    +S YNS++                                    
Sbjct: 404 SILELMEETKEGSKGHISPYNSIIYGLFKQNRFDEASEFLAKMGKLFPRAVDRSMTIIQK 463

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+E  +  AK ++D+M   G   ++  YN L+  FS+ G I  A+ L + M+     P A
Sbjct: 464 CKEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQHGSIREAVELINEMISNNCFPIA 523

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +T+ +++   C++  +++A +          +      S  +  LCR+G
Sbjct: 524 STFNAIITEFCEQGKIESALKFMEDITARGCVPNTETYSPLIDVLCRKG 572


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 193/419 (46%), Gaps = 9/419 (2%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           + + D M  +G +   + +GV +   C+        ++L+++   +  +  G +I   II
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME--QGKLEPGVLIYNTII 58

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            G CK K +++A  +  E+  +  +P+ + Y  +       G   +   +L    +  + 
Sbjct: 59  DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 118

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RSAI 350
           P    +   I   + E ++ EA++L + +V  K +ID  ++  ++LI      D    A 
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMV--KRSIDPSIVTYSSLINGFCMHDRLDEAK 176

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F FM+ K   P + T + L K  CK  + +E +EV++ +S      +  +YN+++  L
Sbjct: 177 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 236

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             +G    A  + +EM   G+ P++  YN+L++  C+   L  A  +++ +  S     +
Sbjct: 237 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 296

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYNI+I    + G++E    LF N+  KGV PD   Y +++ G C++ + + A  +F +
Sbjct: 297 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 356

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKS--LADAR 587
                 +      +T + +  R G    + +L++ + S     D+  I L +  L D R
Sbjct: 357 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGR 415



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 179/410 (43%), Gaps = 6/410 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   Y  ++  L +  +T  AF++ N+++    + G  I N+++  L    ++D+AL +F
Sbjct: 15  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 74

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGF 236
            EM  +G+  + + +   I   C   +      +L ++ +R+   IN  V     +I  F
Sbjct: 75  KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK---INPDVFTFSALIDAF 131

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K  ++ EA K+ DE+  R   P  + Y  +   F +   + E + + +        P  
Sbjct: 132 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDV 191

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G    +R+ E  E+   +       +    N LI G   + D   A   F  
Sbjct: 192 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 251

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P + T + L   LCK  K ++ + V++ L  +     + +YN+M+  +C +G+
Sbjct: 252 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 311

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + + + +   +  KG+ PDV  YN+++   CR+     A  L+ +M   G   N   YN 
Sbjct: 312 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 371

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           LI      G+ E +  L   M   G A DA+T   L+  +  +  L  +F
Sbjct: 372 LIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNMLHDGRLDKSF 420



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 138/262 (52%), Gaps = 9/262 (3%)

Query: 353 FNFM--IEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           FN +  +E+G++ P +   + +   LCK    D+ + ++K +       ++ +Y+ ++S 
Sbjct: 36  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 95

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GR  +A  ++ +M  + ++PDV  +++L++A  +E  L  A+KL+D+M       +
Sbjct: 96  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY+ LI+ F     ++ A ++F  M+ K   PD  TY +L++G C+   ++   EVF 
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF- 214

Query: 530 KSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
           + ++   ++  ++    +I  L + G   +A ++ + + SD    +  ++  LL  L   
Sbjct: 215 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 274

Query: 587 REVEMAIEHIKWIQESS--PTM 606
            ++E A+   +++Q S   PT+
Sbjct: 275 GKLEKAMVVFEYLQRSKMEPTI 296



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 156/422 (36%), Gaps = 84/422 (19%)

Query: 63  HHSLALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS 119
           H   AL  F     +   PN     ++Y S++  L    + +    +L  +   KI  D 
Sbjct: 66  HMDDALNLFKEMETKGIRPNV----VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKM 176
             +  +I + ++     +A  +++E VK     I P I   +SL+        +D A +M
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVK---RSIDPSIVTYSSLINGFCMHDRLDEAKQM 178

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F+ M  +      + +   I  FC                                    
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFC------------------------------------ 202

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K KRVEE  +V  E+  R    + + Y I+ +     G     + + K+    GV P  
Sbjct: 203 -KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNI 261

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y   + GL      C+  +L + +V                             F ++
Sbjct: 262 MTYNTLLDGL------CKNGKLEKAMV----------------------------VFEYL 287

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
                 PT+ T + + + +CK  K ++  +++  LS      D+ +YN M+S  C  G  
Sbjct: 288 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 347

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  + +EMK  G  P+   YN+L+ A  R+     + +L  +M + G +G+  T  ++
Sbjct: 348 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 407

Query: 477 IS 478
            +
Sbjct: 408 TN 409


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 167/355 (47%), Gaps = 10/355 (2%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 147 IIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 205

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +   + G   +P    Y   I G   E  + +A +L + +V      D    N+++ ++ 
Sbjct: 206 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 265

Query: 343 ---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              ++D   A  F   M+ K  +P   T +NL        +  E V V+K +  +    D
Sbjct: 266 KARAMDKAEA--FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + ++++  LC  G+++EA  V   M  KG +PDV  YN ++     +  L     L+D
Sbjct: 324 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 383

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   G + +  T+N+LI  ++  G ++ A+ +F+ M + GV PD  TY +++  LC+  
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 443

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            +  A E FN+ ++  V   +   +  +   C  G  L A +L+  + ++  H D
Sbjct: 444 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 112/500 (22%), Positives = 211/500 (42%), Gaps = 22/500 (4%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +     +  ++ H +       R   A+D +L +        D   Y  +
Sbjct: 129 LALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P +   N+++     +G ++ A  +F EM  
Sbjct: 189 LKSLCDQGKSGQ-ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKR---ENSMINGSVIAVLIIHGFCK 238
           RG+    + +   +   C+   + +  + L + V KR    N   N       +I+G+  
Sbjct: 248 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN------LIYGYSS 301

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             + +EA +V  E+R     PD +   ++       G + E   V       G  P    
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 361

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   + G   +  + +  +L ++++      D    N LI + ++      A++ FN M 
Sbjct: 362 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + T   +   LC+  K D+ +E +  +       D  +YN ++   CT G L 
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 481

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +I E+   G+  D+ F++S++   C+   +  A+ ++D     G   +   Y++L+
Sbjct: 482 KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 541

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F +      M
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE------M 595

Query: 538 LARSI-LSTFMISLCRRGHF 556
           L R I  ST + S+   G F
Sbjct: 596 LQRGIKPSTILYSIIIDGLF 615



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 104/495 (21%), Positives = 200/495 (40%), Gaps = 63/495 (12%)

Query: 55  VINPYLLTHHSLALGFF-----NWASQ------QPNFTHSPLSYHSILKSLSLSRQINAI 103
           V +P ++ ++++  GFF     N A        Q       ++Y+S++ +L  +R ++  
Sbjct: 214 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 273

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           ++ L+Q+   ++  ++  Y  +I         ++A  VF E++ +   I P++   + L+
Sbjct: 274 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH--SILPDVVTLSMLM 331

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G I  A  +FD M+ +G       + + +  +     L  +  + D        
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD-------- 383

Query: 222 MINGSVIAV------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++ G  IA       ++I  +     +++A  + +E+R    KPD + YR V      +G
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 443

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + +      +    GVAP    Y   I G      + +AKEL   I++    +D     
Sbjct: 444 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----- 498

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                         IVFF               S++  NLCK  +  +   ++ +     
Sbjct: 499 --------------IVFF---------------SSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D   Y++++   C  G++ +A  V   M   G++P+V  Y +L+   C+   +    
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ +M   G   +   Y+I+I    + G    A   FH M E G+A D  TY  +L GL
Sbjct: 590 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGL 649

Query: 516 CQETNLQAAFEVFNK 530
            +      A  +F +
Sbjct: 650 FKNRCFDEAIFLFKE 664



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 186/456 (40%), Gaps = 10/456 (2%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           S  Y  ++    +    + A + F ++      +   I N LL         D AL   D
Sbjct: 111 SHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL---D 167

Query: 179 EMSHRGVEFSTI----GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LII 233
            + HR  E   +     + + +   C+  K GQ   +L  +     ++ + +V+A   +I
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPNVVAYNTVI 226

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            GF K   V +A  +  E+  R   PD + Y  V        ++ + E  L++     V 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G     +  EA  + + +       D   L+ L+GS+      + A   
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M  KG+ P + + + +      +    ++ +++ ++  +    D  ++NV++     
Sbjct: 347 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 406

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L +A  +  EM+  G+ PDV  Y +++ A CR   +  A + ++QM   G + +   
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA 466

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  F   G +  A  L   ++  G+  D   ++S++  LC+   +  A  +F+ +V
Sbjct: 467 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 526

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           N  +     + S  M   C  G    A ++   + S
Sbjct: 527 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 169/367 (46%), Gaps = 4/367 (1%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A+ +FD +   GV      +G  I    ++ K+ + +++ D+++  E  +    V   
Sbjct: 381 EDAIALFDLVVDTGVP-DVFTYGCLIHWLSKHHKVHEAVNLWDKMK--EAGVKPSIVTCH 437

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++ G+C+   ++EA K+  E+  +   P+ + Y  + + +    +  +   +L +  + 
Sbjct: 438 SLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQN 497

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           GV+     Y   I GL +  R+CE  E+ +  VS  F       N++I G V +    SA
Sbjct: 498 GVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSA 557

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  +  M EKG  P + T ++     C+ N  D  V++   +  N    D+ +YN  ++ 
Sbjct: 558 LAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINM 617

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G +  A   +  + + GL P+V+ YNS +       ++  A K +  M     + +
Sbjct: 618 FCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAAD 677

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            + Y  LI  FS+VG +  AL L+  ML     PD  T+T+L  GLC+  ++  A  + +
Sbjct: 678 TEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLD 737

Query: 530 KSVNHDV 536
                DV
Sbjct: 738 DMTRLDV 744



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/494 (20%), Positives = 203/494 (41%), Gaps = 43/494 (8%)

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           +G +   A ++F+E++        ++ + ++          +A+++FDEM+  GV+    
Sbjct: 165 RGASAADALTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDER 224

Query: 191 GFGVFIWKFC---ENAKLGQVLSMLDEVRKRENSMINGSVIAVLI--------------- 232
            + + I   C   +  +  QVL  + E   +       SV+ VL+               
Sbjct: 225 VYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQM 284

Query: 233 ----------------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                           + G+C    + +A  + DE       P  + Y ++ +     G 
Sbjct: 285 LLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGM 344

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E   + ++  + G+ P T ++   I GL+  ++  +A  L +++V      D      
Sbjct: 345 TDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVP-DVFTYGC 403

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI  +S       A+  ++ M E G  P++ T  +L    C++   DE +++Y  +    
Sbjct: 404 LIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKG 463

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +  +  +Y  ++          +AY ++ EM + G+      YN L+   C  D +    
Sbjct: 464 FPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVD 523

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           ++  +  + G      TYN +I+ F + G +  AL ++  M EKG+ P+  TYTS ++G 
Sbjct: 524 EMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGY 583

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG------HFLVATKLLRGLSSD 569
           C+      A ++      + +    +  + F+   C++G      HFLV   L  GL+ +
Sbjct: 584 CRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLL-LKDGLTPN 642

Query: 570 LGHSDSHVILLKSL 583
           +   +S V   K+L
Sbjct: 643 VTVYNSFVTGYKNL 656



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 158/395 (40%), Gaps = 9/395 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALK 175
           D   Y  +I  L +     +A ++++++K     + P I  C+SLL      G +D ALK
Sbjct: 397 DVFTYGCLIHWLSKHHKVHEAVNLWDKMKE--AGVKPSIVTCHSLLLGYCEKGCMDEALK 454

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           ++ EM  +G   + + +   +  + +     +  ++L+E+   +N +  G     ++I+G
Sbjct: 455 LYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMH--QNGVSCGEYTYNILING 512

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            C   RV E  ++L         P  + Y  +   F   G +     + ++  + G+ P 
Sbjct: 513 LCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPN 572

Query: 296 TNDYREFILGLIVERRICE-AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFF 353
              Y  FI G       C+ A +L   +       D    NA I         S A+ F 
Sbjct: 573 IVTYTSFIDGY-CRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFL 631

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             +++ G  P ++  ++            E  + Y  +       D E Y  ++      
Sbjct: 632 VLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKV 691

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G +  A  +  EM      PD   + +L    CR   +  AK+L D M       N  TY
Sbjct: 692 GNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTY 751

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
           N+LI+     G+++ A +L   ML  GV PD TTY
Sbjct: 752 NMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTTY 786



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 154/391 (39%), Gaps = 27/391 (6%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           + P ++T HSL LG+                     ++L L  ++       K    N++
Sbjct: 429 VKPSIVTCHSLLLGYCEKGCMD--------------EALKLYSEMPG-----KGFPPNEV 469

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T     Y  ++   I+ K   KA+++ NE+  N    G    N L+  L     +    +
Sbjct: 470 T-----YTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDE 524

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           M       G   +T+ +   I  F +   +G  L+M  ++   E  +    V     I G
Sbjct: 525 MLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMC--EKGITPNIVTYTSFIDG 582

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +C+    + A K+L  +R     PD  AY      F   G++      L    K G+ P 
Sbjct: 583 YCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPN 642

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFN 354
              Y  F+ G    + + EA +    ++  +   D ++   LI   S +   + A+  ++
Sbjct: 643 VTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYS 702

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+    +P   T + L+  LC+    D    +   ++  D   +  +YN++++     G
Sbjct: 703 EMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDG 762

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           +L+EA+ +  +M   G+ PD + YN     C
Sbjct: 763 KLQEAFQLHDKMLSSGVVPDDTTYNIFPLTC 793



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           ++ M+ +G VP   + ++L     +   + + + ++  +    Y+ D + Y+V++   C 
Sbjct: 141 YSRMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMR-ACV 199

Query: 413 SGRLR-EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            GR+  +A  +  EM   G+ PD   Y   +   C+      A ++  +M  +G      
Sbjct: 200 VGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDF 259

Query: 472 TYNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           TYN ++    +VG ++ ALRL   M L  G   D    T+L++G C    +  A ++F++
Sbjct: 260 TYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDE 319

Query: 531 SVNHDVMLARSILSTFMISLC 551
           +V  D +   ++  T +I  C
Sbjct: 320 AV-RDGVTPTNVTYTVLIKGC 339


>gi|219362471|ref|NP_001136609.1| uncharacterized protein LOC100216732 [Zea mays]
 gi|194696354|gb|ACF82261.1| unknown [Zea mays]
          Length = 168

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 100/155 (64%)

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +GE +   +LF +M +KGVAPD  TYTS +  LCQE   + A EVFNKS   D  +A  +
Sbjct: 1   MGESQEVQQLFDHMFQKGVAPDGATYTSFINMLCQENKYERALEVFNKSWMQDAGVASFV 60

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602
           LS+F+++LC++G+F  A  ++  + S++ + +SH+ILLK L D  EVEMAIEH++WI+ +
Sbjct: 61  LSSFILALCKQGNFKAALSVMCNVPSNVENLNSHIILLKHLTDVGEVEMAIEHLEWIRSN 120

Query: 603 SPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
             +  + I  E  ASLS+S+  + +  L+  L  +
Sbjct: 121 CSSSFENIMNEFMASLSTSASLQHVTKLIQYLHSR 155


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 205/449 (45%), Gaps = 17/449 (3%)

Query: 160  LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
            +L  +A     D  + +F +M + G+      F + I  FC  ++    L++L ++ K  
Sbjct: 621  VLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLG 680

Query: 220  NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMG 275
                  S++ +  +++GFC+G R +EA  ++D +     +P+ + Y  V       + + 
Sbjct: 681  ---FQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLN 737

Query: 276  SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL- 334
            +  E    ++KK   G+      Y   I GL    R  +A  L   +V  K  ID +V+ 
Sbjct: 738  NALEIFYGMEKK---GIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRK--IDPNVIF 792

Query: 335  -NALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ALI + V   +   A   +  MI +   P + T ++L    C + +  +   ++ ++ 
Sbjct: 793  FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 393  ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +   F D+ +YN +++  C S R+ +   +  EM  +GL  D   YN+L+   C+   L 
Sbjct: 853  SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLN 912

Query: 453  PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
             A+K++++M   G   ++ TYNIL+      G+IE AL +  ++ +  +  D  TY  ++
Sbjct: 913  VAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIII 972

Query: 513  EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            +G+C+   ++ A+ +F       V L      T +  LCR G    A KL   +  D G 
Sbjct: 973  QGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED-GF 1031

Query: 573  SDSHVILLKSLADAREVEMAIEHIKWIQE 601
              S  I  ++L D     ++ E IK + E
Sbjct: 1032 MPSERIYDETLRD-HYTSLSAELIKAVHE 1059



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 154/359 (42%), Gaps = 36/359 (10%)

Query: 159  SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
            SLL           A+ + D M+  G+E + + +   I   C+N  L   L +   + K+
Sbjct: 690  SLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKK 749

Query: 219  ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               ++  +V    +I G C   R  +A ++L ++  R+  P+ I +  + + F   G++ 
Sbjct: 750  --GIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 807

Query: 279  EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
            E + + K+  +  V P    Y   I G  ++ R+ +AK +                    
Sbjct: 808  EAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM-------------------- 847

Query: 339  GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                          F+ M+ KG  P + T + L    CK  + ++ ++++  ++      
Sbjct: 848  --------------FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVG 893

Query: 399  DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
            D  +YN ++   C +G+L  A  V   M   G+ PD+  YN L++  C    +  A  + 
Sbjct: 894  DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMV 953

Query: 459  DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            + +  +    ++ TYNI+I       +++ A  LF ++  KGV  DA  Y +++ GLC+
Sbjct: 954  EDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCR 1012



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 141/324 (43%), Gaps = 2/324 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++IH FC+  R+  A  +L ++      P  + +  +   F L   + +   ++    K 
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 291 GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
           G  P    Y   I  L     +  A EL  E+   G+   D    N L+ G   S + R 
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A      M ++   P + T + L     K+   DE  E+YK +  +    +  +YN +++
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  GRL  A      M  KG  P+V  YN+L+   C+   +    KL+ +M+  G  G
Sbjct: 285 GLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVG 344

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  TYN LI  + +VG++  A  +F  M+  GV PD  T+  LL GLC    + +A   F
Sbjct: 345 DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKF 404

Query: 529 NKSVNHDVMLARSILSTFMISLCR 552
           N   + +  L     +  +  LC+
Sbjct: 405 NDMRSGEKYLGIVAYNIMIHGLCK 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 130/261 (49%), Gaps = 8/261 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+   + M E G  P +   + +   LCK    +  +E++  +       D  +YN +
Sbjct: 702 QEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTL 761

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S LC SGR  +A  ++++M ++ +DP+V F+ +L++   +E  L  AK L+ +M     
Sbjct: 762 ISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSV 821

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N+ TYN LI+ F   G +  A  +F  M+ KG  PD  TY +L+ G C+   ++   +
Sbjct: 822 HPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMK 881

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLK 581
           +F +  +  ++      +T +   C+ G   VA K+       G+  D+    ++ ILL 
Sbjct: 882 LFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDI---VTYNILLD 938

Query: 582 SLADAREVEMAIEHIKWIQES 602
            L +  ++E A+  ++ +Q++
Sbjct: 939 CLCNNGKIEKALVMVEDLQKN 959



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 183/415 (44%), Gaps = 10/415 (2%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL  +A+    +  +    +M   G+      F + I  FC  ++L   LS+L ++ K  
Sbjct: 71  LLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLG 130

Query: 218 RENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            + S++  GS     ++HGFC   R+ +AF ++  +     +P+ + Y  + +     G 
Sbjct: 131 YDPSIVTFGS-----LLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGD 185

Query: 277 V-FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           V    E++ + ++K  +A     Y   + GL       +A  +   +   +   D     
Sbjct: 186 VNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFT 245

Query: 336 ALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           ALI + V   +   A   +  M++    P   T ++L   LC   +     + + ++++ 
Sbjct: 246 ALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASK 305

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
             F ++ +YN +++  C S R+ +   + Q M R+GL  D   YN+L+   C+   LR A
Sbjct: 306 GCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVA 365

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K ++  M + G + ++ T+ IL+      GEI  A+  F++M           Y  ++ G
Sbjct: 366 KDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHG 425

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           LC+   ++ A+E+F +     V       +  ++ LC+ G    A +L R +  D
Sbjct: 426 LCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKED 480



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSG 414
           M++ G  P +   + L   LCK    +  +E+   +        D+ +YN +++ LC SG
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
             R+A  ++++M ++ ++PDV  + +L++A  ++  L  A++L+ QM  S    N  TYN
Sbjct: 221 EWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYN 280

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI+     G +  A + F  M  KG  P+  TY +L+ G C+   ++   ++F +    
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREV 589
            ++      +T +   C+ G   VA  +       G++ D+    +H ILL  L    E+
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDI---ITHCILLHGLCVNGEI 397

Query: 590 EMAI 593
             A+
Sbjct: 398 GSAM 401



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 154/347 (44%), Gaps = 13/347 (3%)

Query: 125  IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEM 180
            ++    QG   Q+A S+ + +     ++G E    I N+++  L  +  ++NAL++F  M
Sbjct: 691  LLNGFCQGNRFQEAVSLVDSM----AELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGM 746

Query: 181  SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-AVLIIHGFCKG 239
              +G+    + +   I   C + +      +L ++ KR+   I+ +VI    +I  F K 
Sbjct: 747  EKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRK---IDPNVIFFTALIDTFVKE 803

Query: 240  KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
              + EA  +  E+  R   P+ + Y  +   F + G + + + +       G  P    Y
Sbjct: 804  GNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTY 863

Query: 300  REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
               I G    +R+ +  +L   +       D    N LI G   +     A   FN M++
Sbjct: 864  NTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVD 923

Query: 359  KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
             G  P + T + L   LC   K ++ + + + L  N    D+ +YN+++  +C + +++E
Sbjct: 924  CGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKE 983

Query: 419  AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            A+ + + + RKG+  D   Y +++   CR  L R A KL  +M   G
Sbjct: 984  AWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDG 1030



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/442 (20%), Positives = 178/442 (40%), Gaps = 14/442 (3%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           F      QP    S + +  +L +++  R+   +    +Q+++  I+ D   +  +I   
Sbjct: 53  FLEMVQSQP--LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCF 110

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
            +      A S+  ++     D       SLL        I +A  +   M   G E + 
Sbjct: 111 CRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNV 170

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH-----GFCKGKRVEE 244
           + +   I   C+N  +   L +L+E+ K+      G + A L+ +     G C      +
Sbjct: 171 VVYNTLIDCLCKNGDVNIALELLNEMEKK------GRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A ++L ++  R   PD   +  + + F   G++ E + + K+  +  + P T  Y   I 
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL +  R+  AK+  +++ S     +    N LI G   S      +  F  M  +G V 
Sbjct: 285 GLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVG 344

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              T + L    C+  K     +++  + +     D+ ++ +++  LC +G +  A    
Sbjct: 345 DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKF 404

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            +M+       +  YN ++   C+ D +  A +L+ ++   G   + +TY I+I    + 
Sbjct: 405 NDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKN 464

Query: 484 GEIEGALRLFHNMLEKGVAPDA 505
           G    A  LF  M E G+   A
Sbjct: 465 GPRREADELFRRMKEDGIICQA 486



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 113/585 (19%), Positives = 235/585 (40%), Gaps = 64/585 (10%)

Query: 30  WTPLLEQTLHQLGLRDS--LSPSLVARVINPYLLTHHSLALGF------------FNWAS 75
           +T L++  + Q  L ++  L   ++   I P  +T++SL  G             F+  +
Sbjct: 244 FTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMA 303

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            +  F +  ++Y++++     SR++     + +++    +  D+  Y  +I    Q    
Sbjct: 304 SKGCFPNV-VTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 136 QKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           + A  +F+ +  +C  + P+I     LL  L  +G I +A+  F++M         + + 
Sbjct: 363 RVAKDIFSWM-VSC-GVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYN 420

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           + I   C+  K+ +   +   +   E    +     ++I+ G CK     EA    DEL 
Sbjct: 421 IMIHGLCKADKVEEAWELFCRL-PVEGVKPDARTYTIMIL-GLCKNGPRREA----DEL- 473

Query: 254 IRECKPDFIAYRIVAEEFKLMGS---VFEREVVLKKKRKLGVAPRTNDYREF-------- 302
            R  K D I  +         G+   V    +++  KR+  +    + Y  +        
Sbjct: 474 FRRMKEDGIICQAEDGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSS 533

Query: 303 ILGLI-----------VERRIC--------EAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           ++GLI           V R +         E++                    L   +  
Sbjct: 534 LVGLIPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHC 593

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           I    A   F  M++   +P++   + +   + K NK D ++ ++  +       D+ S+
Sbjct: 594 IKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSF 653

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            +++   C   R   A  ++ +M + G  P +    SL+   C+ +  + A  L D M  
Sbjct: 654 TILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAE 713

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N+  YN +I+   +  ++  AL +F+ M +KG+  DA TY +L+ GLC       
Sbjct: 714 LGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTD 773

Query: 524 AF----EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A     ++  + ++ +V+   +++ TF+    + G+ L A  L +
Sbjct: 774 AARLLRDMVKRKIDPNVIFFTALIDTFV----KEGNLLEAKNLYK 814



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 5/214 (2%)

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G + SI    A+  F  M++   +P++   + L   +    + + ++   + +       
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ S+ +++   C   RL  A  ++ +M + G DP +  + SL+   C  + +  A  L 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQ 517
             M  SG   N+  YN LI    + G++  AL L + M +KG +A D  TY +LL GLC 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 518 ETNLQAAFEVF----NKSVNHDVMLARSILSTFM 547
               + A  +      + +N DV    +++  F+
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFV 252



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 105/544 (19%), Positives = 201/544 (36%), Gaps = 57/544 (10%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQ-----------QPNFTHSPLSYHSILKSLSLSRQ 99
           +  R INP + T  +L   F    +            Q +   + ++Y+S++  L +  +
Sbjct: 232 MTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGR 291

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-N 158
           +         +       +   Y  +I    + +  +    +F  + +    +G     N
Sbjct: 292 LYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRM-YREGLVGDTFTYN 350

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+      G +  A  +F  M   GV    I   + +   C N ++G  +   +++R  
Sbjct: 351 TLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSG 410

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E  +  G V   ++IHG CK  +VEEA+++   L +   KPD   Y I+       G   
Sbjct: 411 EKYL--GIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 468

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK------------ 326
           E + + ++ ++ G+  +  D      G + E        LG +I+  K            
Sbjct: 469 EADELFRRMKEDGIICQAED------GHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLY 522

Query: 327 -FTIDDDVLNALIGSVSSIDPRSAIVFFN---FMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            +  D  + ++L+G +      S   F      ++E+G  P   + S  S +        
Sbjct: 523 YYYSDTTLWSSLVGLIPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHH------- 575

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                      + Y   + S    + F        +A+G+  EM +    P +  +  ++
Sbjct: 576 ------HHHHHHHYRERLRSELHCIKF-------DDAFGLFCEMLQSRPIPSIVDFTRVL 622

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  + +       L+ +M   G S +L ++ ILI  F        AL L   M++ G  
Sbjct: 623 TAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQ 682

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P   T  SLL G CQ    Q A  + +      +     I +T +  LC+      A ++
Sbjct: 683 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEI 742

Query: 563 LRGL 566
             G+
Sbjct: 743 FYGM 746



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 6/227 (2%)

Query: 75   SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
            S  PN     L+Y+S++    +  ++     +   +       D   Y  +I    + K 
Sbjct: 820  SVHPNI----LTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKR 875

Query: 135  TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
             +    +F E+            N+L+      G ++ A K+F+ M   GV    + + +
Sbjct: 876  VEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNI 935

Query: 195  FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
             +   C N K+ + L M+++++K  N M    +   +II G C+  +V+EA+ +   L  
Sbjct: 936  LLDCLCNNGKIEKALVMVEDLQK--NQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTR 993

Query: 255  RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +  K D IAY  +       G   E + +  + ++ G  P    Y E
Sbjct: 994  KGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDE 1040


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 174/385 (45%), Gaps = 40/385 (10%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +   M  +GV+ S + + V ++  C N ++ + + + + + +R   ++   V  
Sbjct: 211 LDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVER--GIVADEVTY 268

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +++GFC+ + +E A ++ D++      P   +   + +  +  G + +   +     +
Sbjct: 269 RTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGE 328

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
           LG+ P        I  L  +RR  EA+ L                               
Sbjct: 329 LGMVPNLFACNALIDKLCKDRRFREAERL------------------------------- 357

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F  M  +G  P   T + L  +LCKR   D+ + ++  +        +  YN +++ 
Sbjct: 358 ---FRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLING 414

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C      +A G++ EM  KGL P  + Y+ L+   CR+  L  A +L  +M  +G SGN
Sbjct: 415 YCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGN 474

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + T+  LIS F + G ++ A RLF  M++  V P+  T+  ++EG C+  N++ AF++++
Sbjct: 475 VYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYD 534

Query: 530 KSVNH----DVMLARSILSTFMISL 550
           + V+     D    RS++S   ++L
Sbjct: 535 QMVDRGLTPDNYTYRSLISVLCLTL 559



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 200/456 (43%), Gaps = 10/456 (2%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     +  HS+ K   +   +   D    +++   I +    Y  +I    Q  N  
Sbjct: 367 EPNEVTYAILIHSLCKRGMMDDALCMFD----RMREKGIRVTVYPYNSLINGYCQHDNFH 422

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           +A  + NE+            + L+A L   G + +A+++  EM+  GV  +   F   I
Sbjct: 423 QARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLI 482

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             FC++  + +   + D++   ++S++   V   ++I G+C+   V +AF++ D++  R 
Sbjct: 483 SGFCKDGNMDEAARLFDKMI--DSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRG 540

Query: 257 CKPDFIAYRIVAEEFKL-MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             PD   YR +     L +G++  +E V   +    V   +      + G   E R+ E 
Sbjct: 541 LTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNC-VVLNSFSLTTLMYGFCKEGRLTET 599

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             + + + +    +D      ++ +   + D     V F  M EKG  P     + +   
Sbjct: 600 YHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDV 659

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             K     + +  +  + A+    ++ +Y V+++ LC SG L  A  + +EM      P+
Sbjct: 660 HSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPN 719

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN  ++    E  L  AK L   +   GC  N  T+N LI  F + G+I+GA+ L  
Sbjct: 720 SFTYNCFLDFLANEGELEKAKVLHATIL-EGCLANTVTFNTLIKGFCKAGQIQGAIDLMQ 778

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           N  E G  PD  +Y++++  LC+  ++  AF+++N+
Sbjct: 779 NNTESGFFPDCISYSTIINELCKVGDINKAFQLWNE 814



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 183/448 (40%), Gaps = 47/448 (10%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN+L+  L  D     A ++F  M++RG+E + + + + I   C+   +   L M D +R
Sbjct: 338 CNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMR 397

Query: 217 KRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           ++      G  + V     +I+G+C+     +A  +L+E+  +   P   +Y  +     
Sbjct: 398 EK------GIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLC 451

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G +     + ++  + GV+     +   I G   +  + EA  L + ++      ++ 
Sbjct: 452 RKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEV 511

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N +I G     + R A   ++ M+++G  P   T  +L   LC    + +  E    L
Sbjct: 512 TFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDL 571

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGV----------------------------- 422
             N    +  S   ++   C  GRL E Y +                             
Sbjct: 572 ENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDG 631

Query: 423 ------IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
                  +EMK KG+ PD  F+  +++   +E+ +  A   WD+M A GCS N+ TY +L
Sbjct: 632 EKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVL 691

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+   + G +  A  L   ML     P++ TY   L+ L  E  L+ A +V + ++    
Sbjct: 692 INHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA-KVLHATILEGC 750

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLR 564
           +      +T +   C+ G    A  L++
Sbjct: 751 LANTVTFNTLIKGFCKAGQIQGAIDLMQ 778



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 167/406 (41%), Gaps = 49/406 (12%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A  +FDEM           +   I  +CE   L     +L    + E+  + GS +   +
Sbjct: 179 ARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLT---RMESKGVKGSAVPYNV 235

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G C+  RV EA +V         K   +   IVA+E                     
Sbjct: 236 LMYGLCRNNRVLEAVEV---------KNSMVERGIVADEVT------------------- 267

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRS 348
                  YR  + G      +  A E+ + ++S  F       + ++  +     ID   
Sbjct: 268 -------YRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHID--K 318

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A      + E G VP L   + L   LCK  +  E   +++ ++      +  +Y +++ 
Sbjct: 319 AFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIH 378

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G + +A  +   M+ KG+   V  YNSL+   C+ D    A+ L ++M   G + 
Sbjct: 379 SLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAP 438

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  +Y+ LI+     G++  A+ L   M   GV+ +  T+T+L+ G C++ N+  A  +F
Sbjct: 439 SAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLF 498

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +K ++  V+      +  +   CR G+   A +L      RGL+ D
Sbjct: 499 DKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPD 544



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 117/574 (20%), Positives = 210/574 (36%), Gaps = 71/574 (12%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           IL +L   RQ      +  ++   K  LD  VY   I +  + +N   A  +   ++   
Sbjct: 166 ILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKG 225

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                   N L+  L  +  +  A+++ + M  RG+    + +   ++ FC   +L   L
Sbjct: 226 VKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMAL 285

Query: 210 SMLDE-------------------VRKR--------------ENSMINGSVIAVLIIHGF 236
            M D+                   +RKR              E  M+        +I   
Sbjct: 286 EMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKL 345

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK +R  EA ++   +  R  +P+ + Y I+       G + +   +  + R+ G+    
Sbjct: 346 CKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTV 405

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G        +A+ L   +V           + LI G     D  SA+     
Sbjct: 406 YPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHRE 465

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M   G    + T + L    CK    DE   ++  +  +    +  ++NVM+   C  G 
Sbjct: 466 MARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGN 525

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNS----------------------------------- 440
           +R+A+ +  +M  +GL PD   Y S                                   
Sbjct: 526 VRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTT 585

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           LM   C+E  L     +WD+M A G   +L ++ +++    ++ + E    LF  M EKG
Sbjct: 586 LMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKG 645

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V PD   +T +++   +E N+  A   ++K +           +  +  LC+ G+   A 
Sbjct: 646 VKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQ 705

Query: 561 KLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
            L   +     L +S ++   L  LA+  E+E A
Sbjct: 706 ILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA 739



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/451 (18%), Positives = 177/451 (39%), Gaps = 33/451 (7%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+S++         +    +L ++    +   ++ Y  +I  L +  +   A  +  E+ 
Sbjct: 408 YNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMA 467

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N          +L++    DG +D A ++FD+M    V  + + F V I  +C    + 
Sbjct: 468 RNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVR 527

Query: 207 QVLSMLDEVRKR---ENSMINGSVIAVL------------------------------II 233
           +   + D++  R    ++    S+I+VL                              ++
Sbjct: 528 KAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLM 587

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +GFCK  R+ E + + DE+R R  K D I++ ++      +    +  V+ ++ ++ GV 
Sbjct: 588 YGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVK 647

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
           P    +   I     E  I +A    + +++   + +      LI  +      S+    
Sbjct: 648 PDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQIL 707

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
              +  GR    S   N   +        E  +V           +  ++N ++   C +
Sbjct: 708 CEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKA 767

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+++ A  ++Q     G  PD   Y++++   C+   +  A +LW++M   G   ++  Y
Sbjct: 768 GQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAY 827

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           NILI   +  GE +  L ++ +M+    A D
Sbjct: 828 NILIRWCNIHGEFDKGLGIYSDMVNLKYADD 858


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 204/496 (41%), Gaps = 37/496 (7%)

Query: 76   QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            Q    T S ++ + +L+       I   ++V  ++ V  +  DSS Y+ ++    +    
Sbjct: 775  QNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKI 834

Query: 136  QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            Q+A      +           C  +L  L  +G ++ A+  F +M   G + + I F   
Sbjct: 835  QEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSL 894

Query: 196  IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RI 254
            I   C+   + Q   ML+E+ +  N           +I G CK    E+AF++  +L R 
Sbjct: 895  IDGLCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 952

Query: 255  RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               KP+   Y  +   +     +   E++  + ++ G+ P  N Y   I G       C+
Sbjct: 953  DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH------CK 1006

Query: 315  AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            A   G                             A    N M ++G +P + T +    +
Sbjct: 1007 AGSFGR----------------------------AYELMNLMGDEGFMPNIYTYNAAIDS 1038

Query: 375  LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            LCK++++ E  E+     +     D  +Y +++   C    + +A      M + G + D
Sbjct: 1039 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEAD 1098

Query: 435  VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            +   N L+ A CR+  ++ +++L+  + + G     +TY  +IS + + G+I+ AL+ FH
Sbjct: 1099 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFH 1158

Query: 495  NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            NM   G  PD+ TY SL+ GLC+++ +  A +++   ++  +        T     C+R 
Sbjct: 1159 NMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRN 1218

Query: 555  HFLVATKLLRGLSSDL 570
                A  LL  L   L
Sbjct: 1219 DSANAMILLEPLDKKL 1234


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/567 (21%), Positives = 224/567 (39%), Gaps = 45/567 (7%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  F    ++Y++++  L+ +        VL  +           Y  ++ SL +    
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTL 311

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  +F  +  +       I  SL+   A  G +  A  +FDEM   G     I   V 
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C++    Q     +E+ +         V    II G  K  RV  AF+++  +   
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMR--GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF------------- 302
            C PD + Y  + + F  +G + E   +L +  K   +P    Y                
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKT 489

Query: 303 -----------------------ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
                                  I+GL    R+ EA  + + +VS     D    N LI 
Sbjct: 490 LDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN 549

Query: 339 GSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           G   S + R   A    + + + G +P   T + L   LCK  + D  V++ +  S+  +
Sbjct: 550 GLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGW 609

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y  + + LC  G++  A  + QEM R+G  PD + Y  ++    +   L  A K
Sbjct: 610 NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACK 669

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGL 515
            +D+M   G    + TY  L+      G ++ A   F +ML +G +      Y +L+ G 
Sbjct: 670 FFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGF 729

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C+   + AA ++F   ++   +      ++    L R G    A +LL+ +++  G S  
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAA--GGSPP 787

Query: 576 HVILLKSLADA-REVEMAIEHIKWIQE 601
           H     ++ D  R+ + + + +K +QE
Sbjct: 788 HAATFTAILDGLRKSDESGKLLKLVQE 814



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 133/575 (23%), Positives = 235/575 (40%), Gaps = 38/575 (6%)

Query: 43  LRDSLSP-------SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLS 95
           +R+ L P       S VA V+    +T    A+ FF WA +Q  F H   +Y+ ++  L 
Sbjct: 73  IRNVLGPVHGQVLGSHVAAVLRSLKVT--GTAISFFRWAGEQAGFQHDVFTYNCLMNLLV 130

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGP 154
             +  +   ++ +++    I  ++  +  +I S  + +    A + F  +K   C+   P
Sbjct: 131 AEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCK---P 187

Query: 155 EICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           ++   L+ V  L   G  + A ++F EM   G           + +    AK  +V    
Sbjct: 188 DLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK--RVKEAR 245

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           +   + E        IA   +I G  K    +EA KVLD +  + C P  + Y I+    
Sbjct: 246 EVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G++   E + +     G  P +  Y   I G     R+ EA  L + +V   +  D 
Sbjct: 306 CKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                +I G   S +   A   F  M+  G  P + T + + + L K  +      + K 
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKG 425

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR--- 447
           + A+  F D  +Y  ++   C  GRL EA  ++ E+ +    P++  Y+SL+   C    
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGS 485

Query: 448 -----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
                +DL   +K   + +    C         +I    + G ++ A R+F  M+ +G  
Sbjct: 486 VEKTLDDLFEQSKAAAETLDPGLCCS-------IIVGLCKTGRLDEACRIFQRMVSEGCK 538

Query: 503 PDATTYTSLLEGLC--QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           PDATTY  L+ GLC  +E  ++ AF + +       +      +   I LC+ G    A 
Sbjct: 539 PDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAV 598

Query: 561 KLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
           K+L   SS   ++D  ++  L   L    +V+ A+
Sbjct: 599 KMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAV 633



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +YN +++ L       + Y + +EM + G+ P+   +N L+ +  R      A   +
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQ 517
           + M    C  +L T+ IL+    + G  E A  +FH M+  G V PD   +T+++  L +
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDS 575
              ++ A EVF +             +T +  L + GH   A K+L  +   + +    +
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESS 603
           + IL+ SL  A  +E A E  + +  S 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASG 325


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 126/586 (21%), Positives = 238/586 (40%), Gaps = 73/586 (12%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A+ QP+       Y ++++SL   +  N    ++  ++ N+  L   VY  +I  L + +
Sbjct: 125 ANVQPDI----YIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSR 180

Query: 134 NTQKAFSV-------------------FNEVKFNCEDIGPE-ICNS------LLAVLASD 167
              +A  +                   FNE +   +++G + +C +      L+      
Sbjct: 181 RIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRR 240

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--------E 219
           G +DNA+   D+M+   +EF+   +   I  +C+           DE+  +         
Sbjct: 241 GEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTY 300

Query: 220 NSMING-------------------------SVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            S+I+G                         +     II G C+   + EA ++  E++ 
Sbjct: 301 TSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKE 360

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R+  P  + Y ++ E     G++ E   +L +    G  P T  YR  I GL    R+ E
Sbjct: 361 RKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSE 420

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           AKE  + +      +++   +AL+ G       + A+     M+E+G    L   + L  
Sbjct: 421 AKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILID 480

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              + + +  L  + K +  +    D   Y  M+     +G L+EA+G+   M  +G  P
Sbjct: 481 GTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLP 540

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V  Y +L+   C+  L+  A+ L  +   S  + N  TY   +   +  G +E A++L 
Sbjct: 541 NVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLH 600

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           H ML KG      +Y  L+ G C+   ++ A ++ +   ++D++      ST +   C+R
Sbjct: 601 HAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKR 659

Query: 554 GHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
            +   A KL      +GL  D   + ++  L+     A E+E A E
Sbjct: 660 SNLQEAIKLWHTMLDKGLKPD---TLAYSFLVHGCCIAGELEKAFE 702



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 167/408 (40%), Gaps = 63/408 (15%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++ L +FD++    V+     +   +   CE     +   M+  +   +  +    V+  
Sbjct: 113 NDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKL--SIVVYN 170

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++IHG CK +R+ EA ++ + L  +  + + + Y          G   E E++ K+  + 
Sbjct: 171 VLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY---------YGKFNEAELLFKEMGEK 221

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVI--------VSGKFTIDDDVLNALIGSVS 342
           G+      Y       I+    C   E+   I         S +FT+     N+LI    
Sbjct: 222 GLCANHITYS------ILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYP--YNSLINGYC 273

Query: 343 SIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-----KVLSANDY 396
            +   SA   +F+ MI+KG  PT+ T ++L    C   +  +  +VY     K +S N Y
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTY 333

Query: 397 ---------------------FTDME---------SYNVMVSFLCTSGRLREAYGVIQEM 426
                                F +M+         +YNVM+   C SG + EA+ ++ EM
Sbjct: 334 TFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM 393

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             KG  PD   Y  L+   C    +  AK+  D +       N   Y+ L+  + + G  
Sbjct: 394 VGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRF 453

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           + A+     M+E+GVA D   Y  L++G  +E + +A F +  +  NH
Sbjct: 454 KDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNH 501



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 22/345 (6%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK----KK 287
           +++G  + +R  +   + D++     +PD   Y  V      +    + + ++      +
Sbjct: 102 LLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQ 161

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            KL +      Y   I GL   RRI EA E+   ++             L  +V +   +
Sbjct: 162 CKLSIVV----YNVLIHGLCKSRRIWEALEIKNCLMQ----------KGLEANVVTYYGK 207

Query: 348 --SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYN 404
              A + F  M EKG      T S L  + C+R + D  +    K+  A+  FT +  YN
Sbjct: 208 FNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFT-VYPYN 266

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++  C  G    A     EM  KGL P V  Y SL+   C E     A K++++M A 
Sbjct: 267 SLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAK 326

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G S N  T+  +IS       +  A+RLF  M E+ + P   TY  ++EG C+  N+  A
Sbjct: 327 GISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEA 386

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           F + ++ V    +         +  LC  G    A + +  L  D
Sbjct: 387 FHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKD 431



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 190/473 (40%), Gaps = 82/473 (17%)

Query: 111 KVNKITLDSSVYRFIIPSLIQG----KNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVL 164
           K+ K +++ +VY +   SLI G     N   A   F+E+    + + P +    SL++  
Sbjct: 252 KMTKASIEFTVYPY--NSLINGYCKLGNASAAKYYFDEMID--KGLTPTVVTYTSLISGY 307

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
            ++G    A K+++EM+ +G+  +T  F   I   C    + + + +  E+++R+  ++ 
Sbjct: 308 CNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERK--IMP 365

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V   ++I G C+   + EAF +LDE+  +   PD   YR +      +G V E +  +
Sbjct: 366 SEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFV 425

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
               K         Y   + G   E R  +A     V+V     +D      LI G+   
Sbjct: 426 DDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTARE 485

Query: 344 IDPRS----------------AIVFFNF-------------------MIEKGRVPTLSTL 368
            D R+                A+++ N                    M+++G +P + T 
Sbjct: 486 HDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTY 545

Query: 369 SNLSKNLCKRNKSD--ELVEVYKVLSAN-----------DYFT---DME----------- 401
           + L   LCK    D  EL+    ++S             D+ T   +ME           
Sbjct: 546 TALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK 605

Query: 402 -------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                  SYN+++   C  G++ EA  ++  M    + PD   Y++++   C+   L+ A
Sbjct: 606 GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEA 665

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
            KLW  M   G   +   Y+ L+      GE+E A  L   M+ +G+  +  T
Sbjct: 666 IKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 189/438 (43%), Gaps = 48/438 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L   G ++ AL+  ++M + GVE   + + +    F       ++L ++    K
Sbjct: 309 NILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF-------RILGLISGAWK 361

Query: 218 RENSMI-NGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               M+ NG     V   ++I G C+   +EE+FK+ +++  +  K   + Y ++     
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G + E  ++L +   +G+ P    Y   I GL     + EA EL E + S +   +  
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSF 481

Query: 333 VLNALIG----------------SVSSIDPRSAIVFFNFMI------------------- 357
           V +A+I                 SV+  D    I+ +N MI                   
Sbjct: 482 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 541

Query: 358 -EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            EKG  PT+ T ++L    CK+ K  E V++   +  +       +Y  +++  C  G +
Sbjct: 542 IEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDM 601

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
              + ++ EM+ K + P    Y  +++  C+E  L  + +L   M+A G   +  TYN +
Sbjct: 602 HSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 661

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F +  +++ A +L + ML+  + P   TY  L+ GLC   NL+ A  +     +  +
Sbjct: 662 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI 721

Query: 537 MLARSILSTFMISLCRRG 554
            L +   +T + + C +G
Sbjct: 722 RLTKVAYTTIIKAHCAKG 739



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 231/513 (45%), Gaps = 33/513 (6%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           VL ++KV  + +  + Y  ++ +L   ++T   + V+NE+K +           L+  L 
Sbjct: 190 VLAKMKVLNLQVSIATYNSLLYNL---RHTDIMWDVYNEIKASGVPQNEYTNPILIDGLC 246

Query: 166 SDGYIDNALKMFDEMSHRGVEF--STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
               + +A+    E    G EF  S + F   +  FC   K+G V    D  +     MI
Sbjct: 247 RQSRLQDAVTFLRETG--GEEFGPSVVSFNALMSGFC---KMGSV----DVAKSFFCMMI 297

Query: 224 NGSVIA-----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              ++       +++HG C    +EEA +  +++     +PD + Y I+A  F+++G + 
Sbjct: 298 KYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLIS 357

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
               V+++    G+ P    Y   I G      I E+ +L E ++S    +       L+
Sbjct: 358 GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL 417

Query: 339 GSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            S+     ID   A++  + M   G  P L T S L   LCKR   +E +E+Y+ + +  
Sbjct: 418 SSLCKSGRID--EAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKR 475

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            + +    + ++S L   G + EA      + +  +  ++  YN +++   +   +  A 
Sbjct: 476 IYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAV 535

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + + Q+   G S  + T+N LI  F + G++  A++L   +   G+ P + TYT+L+ G 
Sbjct: 536 RSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGY 595

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
           C+E ++ + F++ ++     +   +   +  +  LC+ G    + +LL     RGL  D 
Sbjct: 596 CEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD- 654

Query: 571 GHSDSHVILLKSLADAREVEMAIE-HIKWIQES 602
               ++  +++S   A +++ A + H + +Q S
Sbjct: 655 --QITYNTVIQSFCKAHDLQKAFQLHNQMLQHS 685



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 191/417 (45%), Gaps = 26/417 (6%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE--VRKRENSMING 225
           G I+ + K+ ++M  +G++ S + + V +   C++ ++ + + +L E  V   +  ++  
Sbjct: 389 GNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTY 448

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVL 284
           SV+    IHG CK   VEEA ++ +E+  +   P+ F+   I++  F+  G++ E ++  
Sbjct: 449 SVL----IHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFE-KGAISEAQMYF 503

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV------LNALI 338
               K  VA       E IL  I+     +   +GE + S K  I+  +       N+LI
Sbjct: 504 DSVTKSDVA------EEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G         A+   + +   G VPT  T + L    C+      + ++   + A    
Sbjct: 558 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 617

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
               +Y V+V  LC  GRL E+  +++ M  +GL PD   YN+++++ C+   L+ A +L
Sbjct: 618 PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQL 677

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            +QM       +  TYN+LI+     G ++ A RL   + ++ +      YT++++  C 
Sbjct: 678 HNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCA 737

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-----GHFLVATKLLRGLSSD 569
           + ++Q A   F++ V     ++    S  +  LC+R       F     L  G+  D
Sbjct: 738 KGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPD 794



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 192/453 (42%), Gaps = 9/453 (1%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           V++++ +N +  D   Y  +I    Q  N +++F +  ++      +       LL+ L 
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV---RKRENSM 222
             G ID A+ +  EM   G++   + + V I   C+   + + + + +E+   R   NS 
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSF 481

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +  ++I+ L    F KG  + EA    D +   +   + I Y I+ + +  +G++ E   
Sbjct: 482 VCSAIISGL----FEKGA-ISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVR 536

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI-VSGKFTIDDDVLNALIGSV 341
             K+  + G++P    +   I G   + ++ EA +L + I V G           + G  
Sbjct: 537 SYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYC 596

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D  S     + M  K   PT  T + + K LCK  +  E V++ K + A   F D  
Sbjct: 597 EEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQI 656

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++   C +  L++A+ +  +M +  L P    YN L+   C    L+ A +L   +
Sbjct: 657 TYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTL 716

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                      Y  +I      G+++ AL  FH M+E+G       Y++++  LC+   +
Sbjct: 717 QDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLI 776

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             A   F   + H +   + I    + +  R G
Sbjct: 777 TDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSG 809



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/488 (19%), Positives = 206/488 (42%), Gaps = 55/488 (11%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAID 104
           +NP L+T+  L  G     + + +F             S ++Y  +L SL  S +I+   
Sbjct: 371 LNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAV 430

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPE--ICNSLL 161
            +L +++V  +  D   Y  +I  L +    ++A  ++ E+   C + I P   +C++++
Sbjct: 431 ILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM---CSKRIYPNSFVCSAII 487

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           + L   G I  A   FD ++   V    I + + I  +   AKLG +   +   ++    
Sbjct: 488 SGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY---AKLGNIGEAVRSYKQIIEK 544

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I+ +++    +I+GFCK  ++ EA K+LD +++    P  + Y  +   +   G +   
Sbjct: 545 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 604

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             +L +     + P    Y   + GL  E R+ E+ +L                      
Sbjct: 605 FDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQL---------------------- 642

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                         +M  +G  P   T + + ++ CK +   +  +++  +  +      
Sbjct: 643 ------------LKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP 690

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +YNV+++ LC  G L++A  ++  ++ + +      Y ++++A C +  ++ A   + Q
Sbjct: 691 VTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQ 750

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   +++ Y+ +I++  +   I  A   F  ML  G+ PD      +L    +  +
Sbjct: 751 MVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGD 810

Query: 521 LQAAFEVF 528
             + FE+F
Sbjct: 811 PNSVFEIF 818



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 159/343 (46%), Gaps = 30/343 (8%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           +V+  ++   + + + V +A  VL ++++   +     Y  +    +    +++   V  
Sbjct: 168 NVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWD---VYN 224

Query: 286 KKRKLGVAPRTNDYREFIL--GLIVERRICEA---------KELGEVIVSGKFTIDDDVL 334
           + +  GV P+ N+Y   IL  GL  + R+ +A         +E G  +VS          
Sbjct: 225 EIKASGV-PQ-NEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVS---------F 273

Query: 335 NALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           NAL+     + S+D   +  FF  MI+ G +P + + + L   LC     +E +E    +
Sbjct: 274 NALMSGFCKMGSVDVAKS--FFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDM 331

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
             +    D+ +YN++ +     G +  A+ V+Q M   GL+PD+  Y  L+   C+   +
Sbjct: 332 ENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNI 391

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             + KL ++M + G   ++ TY +L+S   + G I+ A+ L H M   G+ PD  TY+ L
Sbjct: 392 EESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVL 451

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           + GLC+   ++ A E++ +  +  +     + S  +  L  +G
Sbjct: 452 IHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKG 494



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 162/393 (41%), Gaps = 54/393 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+Y  ++  L     +     + +++   +I  +S V   II  L +     +A   F+ 
Sbjct: 446 LTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDS 505

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           V  +  D+  EI   N ++   A  G I  A++ + ++  +G+  + + F   I+ FC+ 
Sbjct: 506 VTKS--DVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKK 563

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            KL + + +LD ++   + ++  SV    +++G+C+   +   F +L E+  +  KP  I
Sbjct: 564 GKLAEAVKLLDTIKV--HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQI 621

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE-- 320
            Y +V +     G + E   +LK     G+ P    Y   I      +  C+A +L +  
Sbjct: 622 TYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVI------QSFCKAHDLQKAF 675

Query: 321 -------------------VIVSGK-------------FTIDDDVLNALIGSVSSI---- 344
                              V+++G               T+ D  +     + ++I    
Sbjct: 676 QLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAH 735

Query: 345 ----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
               D ++A+VFF+ M+E+G   ++   S +   LCKRN   +    + ++  +    D 
Sbjct: 736 CAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQ 795

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           +   VM++    SG     + +   M + GL P
Sbjct: 796 DICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 167/355 (47%), Gaps = 10/355 (2%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 150 IIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 208

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +   + G   +P    Y   I G   E  + +A +L + +V      D    N+++ ++ 
Sbjct: 209 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 268

Query: 343 ---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              ++D   A  F   M+ K  +P   T +NL        +  E V V+K +  +    D
Sbjct: 269 KARAMDKAEA--FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 326

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + ++++  LC  G+++EA  V   M  KG +PDV  YN ++     +  L     L+D
Sbjct: 327 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 386

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   G + +  T+N+LI  ++  G ++ A+ +F+ M + GV PD  TY +++  LC+  
Sbjct: 387 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 446

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            +  A E FN+ ++  V   +   +  +   C  G  L A +L+  + ++  H D
Sbjct: 447 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 501



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 211/500 (42%), Gaps = 22/500 (4%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +     +  ++ H +       R   A+D +L +        D   Y  +
Sbjct: 132 LALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 191

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P +   N+++     +G ++ A  +F EM  
Sbjct: 192 LKSLCDQGKSGQ-ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 250

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKR---ENSMINGSVIAVLIIHGFCK 238
           RG+    + +   +   C+   + +  + L + V KR    N   N       +I+G+  
Sbjct: 251 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN------LIYGYSS 304

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             + +EA +V  E+R     PD +   ++       G + E   V       G  P    
Sbjct: 305 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 364

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   + G   +  + +  +L ++++      D    N LI + ++      A++ FN M 
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + T   +   LC+  K D+ +E +  +       D  +YN ++   CT G L 
Sbjct: 425 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 484

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +I E+   G+  D+ F++S++   C+   +  A+ ++D     G   +   YN+L+
Sbjct: 485 KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLM 544

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F +      M
Sbjct: 545 DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE------M 598

Query: 538 LARSI-LSTFMISLCRRGHF 556
           L R I  ST + S+   G F
Sbjct: 599 LQRGIKPSTILYSIIIDGLF 618



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 106/495 (21%), Positives = 200/495 (40%), Gaps = 63/495 (12%)

Query: 55  VINPYLLTHHSLALGFF-----NWASQ------QPNFTHSPLSYHSILKSLSLSRQINAI 103
           V +P ++ ++++  GFF     N A        Q       ++Y+S++ +L  +R ++  
Sbjct: 217 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 276

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           ++ L+Q+   ++  ++  Y  +I         ++A  VF E++ +   I P++   + L+
Sbjct: 277 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH--SILPDVVTLSMLM 334

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G I  A  +FD M+ +G       + + +  +     L  +  + D        
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD-------- 386

Query: 222 MINGSVIAV------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++ G  IA       ++I  +     +++A  + +E+R    KPD + YR V      +G
Sbjct: 387 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 446

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + +      +    GVAP    Y   I G      + +AKEL   I++    +D     
Sbjct: 447 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----- 501

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                         IVFF               S++  NLCK  +  +   ++ +     
Sbjct: 502 --------------IVFF---------------SSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D   YN+++   C  G++ +A  V   M   G++P+V  Y +L+   C+   +    
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ +M   G   +   Y+I+I    E G    A   FH M E G+A D  TY  +L GL
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 516 CQETNLQAAFEVFNK 530
            +      A  +F +
Sbjct: 653 FKNRCFDEAIFLFKE 667



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 186/456 (40%), Gaps = 10/456 (2%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           S  Y  ++    +    + A + F ++      +   I N LL         D AL   D
Sbjct: 114 SHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL---D 170

Query: 179 EMSHRGVEFSTI----GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LII 233
            + HR  E   +     + + +   C+  K GQ   +L  +     ++ + +V+A   +I
Sbjct: 171 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPNVVAYNTVI 229

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            GF K   V +A  +  E+  R   PD + Y  V        ++ + E  L++     V 
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G     +  EA  + + +       D   L+ L+GS+      + A   
Sbjct: 290 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 349

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M  KG+ P + + + +      +    ++ +++ ++  +    D  ++NV++     
Sbjct: 350 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 409

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L +A  +  EM+  G+ PDV  Y +++ A CR   +  A + ++QM   G + +   
Sbjct: 410 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA 469

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  F   G +  A  L   ++  G+  D   ++S++  LC+   +  A  +F+ +V
Sbjct: 470 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 529

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           N  +     + +  M   C  G    A ++   + S
Sbjct: 530 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS 565



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P    Y  LM+ C R      A   + Q+  +G   N+   N L+  F E    + AL
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 491 R-LFHNMLEKGVAPDATTYTSLLEGLCQE 518
             L H   E G  PD  +Y+ LL+ LC +
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQ 198


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 167/355 (47%), Gaps = 10/355 (2%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 160 IIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 218

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +   + G   +P    Y   I G   E  + +A +L + +V      D    N+++ ++ 
Sbjct: 219 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 278

Query: 343 ---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              ++D   A  F   M+ K  +P   T +NL        +  E V V+K +  +    D
Sbjct: 279 KARAMDKAEA--FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 336

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + ++++  LC  G+++EA  V   M  KG +PDV  YN ++     +  L     L+D
Sbjct: 337 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 396

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   G + +  T+N+LI  ++  G ++ A+ +F+ M + GV PD  TY +++  LC+  
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 456

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            +  A E FN+ ++  V   +   +  +   C  G  L A +L+  + ++  H D
Sbjct: 457 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 511



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/500 (22%), Positives = 211/500 (42%), Gaps = 22/500 (4%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +     +  ++ H +       R   A+D +L +        D   Y  +
Sbjct: 142 LALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 201

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P +   N+++     +G ++ A  +F EM  
Sbjct: 202 LKSLCDQGKSGQ-ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 260

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKR---ENSMINGSVIAVLIIHGFCK 238
           RG+    + +   +   C+   + +  + L + V KR    N   N       +I+G+  
Sbjct: 261 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN------LIYGYSS 314

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             + +EA +V  E+R     PD +   ++       G + E   V       G  P    
Sbjct: 315 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 374

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   + G   +  + +  +L ++++      D    N LI + ++      A++ FN M 
Sbjct: 375 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + T   +   LC+  K D+ +E +  +       D  +YN ++   CT G L 
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 494

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +I E+   G+  D+ F++S++   C+   +  A+ ++D     G   +   Y++L+
Sbjct: 495 KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 554

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F +      M
Sbjct: 555 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE------M 608

Query: 538 LARSI-LSTFMISLCRRGHF 556
           L R I  ST + S+   G F
Sbjct: 609 LQRGIKPSTILYSIIIDGLF 628



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/495 (21%), Positives = 200/495 (40%), Gaps = 63/495 (12%)

Query: 55  VINPYLLTHHSLALGFF-----NWASQ------QPNFTHSPLSYHSILKSLSLSRQINAI 103
           V +P ++ ++++  GFF     N A        Q       ++Y+S++ +L  +R ++  
Sbjct: 227 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 286

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           ++ L+Q+   ++  ++  Y  +I         ++A  VF E++ +   I P++   + L+
Sbjct: 287 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH--SILPDVVTLSMLM 344

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             L   G I  A  +FD M+ +G       + + +  +     L  +  + D        
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD-------- 396

Query: 222 MINGSVIAV------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++ G  IA       ++I  +     +++A  + +E+R    KPD + YR V      +G
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 456

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + +      +    GVAP    Y   I G      + +AKEL   I++    +D     
Sbjct: 457 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----- 511

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                         IVFF               S++  NLCK  +  +   ++ +     
Sbjct: 512 --------------IVFF---------------SSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D   Y++++   C  G++ +A  V   M   G++P+V  Y +L+   C+   +    
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ +M   G   +   Y+I+I    + G    A   FH M E G+A D  TY  +L GL
Sbjct: 603 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 662

Query: 516 CQETNLQAAFEVFNK 530
            +      A  +F +
Sbjct: 663 FKNRCFDEAIFLFKE 677



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 186/456 (40%), Gaps = 10/456 (2%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           S  Y  ++    +    + A + F ++      +   I N LL         D AL   D
Sbjct: 124 SHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL---D 180

Query: 179 EMSHRGVEFSTI----GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LII 233
            + HR  E   +     + + +   C+  K GQ   +L  +     ++ + +V+A   +I
Sbjct: 181 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPNVVAYNTVI 239

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            GF K   V +A  +  E+  R   PD + Y  V        ++ + E  L++     V 
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   I G     +  EA  + + +       D   L+ L+GS+      + A   
Sbjct: 300 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 359

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M  KG+ P + + + +      +    ++ +++ ++  +    D  ++NV++     
Sbjct: 360 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 419

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L +A  +  EM+  G+ PDV  Y +++ A CR   +  A + ++QM   G + +   
Sbjct: 420 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA 479

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  F   G +  A  L   ++  G+  D   ++S++  LC+   +  A  +F+ +V
Sbjct: 480 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 539

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           N  +     + S  M   C  G    A ++   + S
Sbjct: 540 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 575


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 211/484 (43%), Gaps = 21/484 (4%)

Query: 50  SLVARVINPY-----LLTHHSLALGFFNWA----SQQPNFTHSP--LSYHSILKSLSLSR 98
           SL+A  ++P      LL H   + G    A    S+   F  SP  ++Y+++L +     
Sbjct: 199 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKG 258

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEIC 157
            +    ++L ++K   I    + Y  ++ +  +    ++A  V   +  F  E   P++ 
Sbjct: 259 MLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFE---PDLW 315

Query: 158 --NSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
             N L A L   G +D A K+ DEM   G V    + +   +    +  +    L++L+E
Sbjct: 316 TYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEE 375

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +R  E  + +  V   +I+ G C+  ++EEA   L+ +      PD I Y  + +     
Sbjct: 376 MR--EKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKA 433

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G+V +  V++ +  + G+   T      +  L  E+R  EA+EL        F  D+   
Sbjct: 434 GNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSY 493

Query: 335 NALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             ++ +      P  A+  ++ MI++   P++ST + L K L    K  E ++    L  
Sbjct: 494 GTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELME 553

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D  +YN+++   C  G L +A+    +M      PDV   N+LM   C    L  
Sbjct: 554 MGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEK 613

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A KL++     G   ++ TYN LI    +  +++ ALR F +M  +G+ PD  TY  LL 
Sbjct: 614 AMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLS 673

Query: 514 GLCQ 517
            L +
Sbjct: 674 ALSE 677



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 187/445 (42%), Gaps = 16/445 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+    S G + +AL    +M   G+    + +   +   C    LG+  ++L   R 
Sbjct: 213 NLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLL--ARM 270

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           ++  ++        ++  + +   +++A  V++ +     +PD   Y ++A      G V
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 278 FEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDD 332
            E   +  +  +LG V+P    Y   +      +R  +A    +E+ E  V       + 
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390

Query: 333 VLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           ++  L   G +       A+     M E+G  P + T + L    CK     +   +   
Sbjct: 391 IVKGLCREGQL-----EEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDE 445

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +  +    D  + N ++  LC   R  EA  +++   ++G  PD   Y ++M A  +E  
Sbjct: 446 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYK 505

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
             PA  LWD+M     + ++ TYN LI   S +G++  A+   + ++E G+ PD TTY  
Sbjct: 506 PEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNI 565

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
           ++   C+E +L+ AF+  NK V +         +T M  LC  G    A KL        
Sbjct: 566 IIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKG 625

Query: 571 GHSD--SHVILLKSLADAREVEMAI 593
              D  ++  L+++L    +V+ A+
Sbjct: 626 KKVDVITYNTLIQALCKDNDVDTAL 650



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 190/450 (42%), Gaps = 49/450 (10%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           ++ D   Y  ++ +  + + +  A ++  E++           N ++  L  +G ++ AL
Sbjct: 346 VSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEAL 405

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
              + M+  G+    I +   I   C+   + +   ++DE+ +    M   ++  +L  +
Sbjct: 406 GRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLL--Y 463

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA----EEFKLMGSVFEREVVLKKKRKL 290
             CK KR EEA ++L     R   PD ++Y  V     +E+K   ++   + ++K+K   
Sbjct: 464 NLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRK--- 520

Query: 291 GVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRS 348
            + P  + Y   I GL    ++ EA  +L E++  G    DD   N +I +     D   
Sbjct: 521 -LTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMG-LVPDDTTYNIIIHAYCKEGDLEK 578

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A  F N M+E    P + T + L   LC   + ++ +++++         D+ +YN ++ 
Sbjct: 579 AFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQ 638

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--- 465
            LC    +  A     +M+ +GL PDV  YN L+ A         A+K+  ++  SG   
Sbjct: 639 ALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLY 698

Query: 466 ----------------------------CSGNLK-----TYNILISKFSEVGEIEGALRL 492
                                         GN +     +YN  I +    G+++ A  +
Sbjct: 699 GRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAV 758

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              M++KG++ D +TY +L+EGL +    Q
Sbjct: 759 LDEMMQKGMSVDNSTYITLMEGLIKRQKRQ 788



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 9/210 (4%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N++V   C+ G L +A   + +M+  GL PD   YN+L+ A CR+ +L  A+ L  +M
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G      TYN L+S ++ +G I+ A  +   M   G  PD  TY  L  GLCQ   +
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLC----RRGHFLVATKLLR--GLSSDLGHSDS 575
             AF++ ++     ++    +    ++  C    R    L   + +R  G+ S L    +
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLV---T 387

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESSPT 605
           H I++K L    ++E A+  ++ + E   T
Sbjct: 388 HNIIVKGLCREGQLEEALGRLEMMTEEGLT 417



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 12/259 (4%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL+AL  S S+  P++++  F+ +I     P   T + L    C +    + +     + 
Sbjct: 178 VLSALARSPST-SPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQ 236

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +YN +++  C  G L EA  ++  MK++G+ P  + YN+L+ A  R   ++
Sbjct: 237 GFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIK 296

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSL 511
            A  + + M A G   +L TYN+L +   + G+++ A +L   M + G V+PD  TY +L
Sbjct: 297 QATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTL 356

Query: 512 LEGL--CQETN--LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           ++    CQ ++  L    E+  K V   ++    I+      LCR G    A   L  ++
Sbjct: 357 VDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVK----GLCREGQLEEALGRLEMMT 412

Query: 568 SDLGHSDSHVILLKSLADA 586
            +    D  VI   +L DA
Sbjct: 413 EEGLTPD--VITYNTLIDA 429


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 129/571 (22%), Positives = 246/571 (43%), Gaps = 55/571 (9%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
            F+W  +Q  + HS  +Y+  L +L+ +          +Q++      D   Y  ++  L
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-----IDNALKMFDEMSHRG 184
            +     KA  +  +++    + G ++ N +   +  DG      +D+AL++F  MS  G
Sbjct: 84  CKAGELDKAKELLGQLR----ESGVKL-NVITYSVVIDGCCKASRVDDALEIFKTMSSGG 138

Query: 185 -VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKR 241
                 + F   +   C   ++ +   + + + K   E ++I+ S +    + G CK  R
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTL----LDGLCKAGR 194

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-----REVVLKKKRKLGVAPRT 296
           ++EA ++ +E+  + C PD +AY            V E     R++V K  +   VA  T
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 297 NDYREFILGLIVER------------RIC------EAKELGEVIVSGKFTIDDDVLNALI 338
                 ++G++ ++             +C      EA +  E ++S       ++ N LI
Sbjct: 255 ------VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308

Query: 339 GSV--SSIDPRSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +V  S   P   ++F     M E    P L T + +  NLCK  + DE  E+   ++  
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y+ +V  LC  G+L  A  +++EM ++G+ PD     S++ A  +   +  A
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
               + M A G + +L TYN L+    + G I+ A+     M+     PD  +YT ++  
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC+      A  +F + V   V+    +  + +  L R G   +A +LL+   + L   D
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLK---TSLCKPD 545

Query: 575 --SHVILLKSLADAREVEMAIEHIKWIQESS 603
              H ++L  L  A + E A E ++ + ++ 
Sbjct: 546 FVMHKMVLDGLCKAGKAEDACEVVERMADAG 576



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 45/246 (18%), Positives = 101/246 (41%), Gaps = 7/246 (2%)

Query: 75  SQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           ++  N+  SP  ++Y +++  L    +++    +L+++    +  DS     I+ +L + 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                A S    +K           N+LL  L   G ID A+    +M           +
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            + I   C + +     ++  E+ KR   ++  +V+   ++ G  +    + A ++L   
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKR--GVLPDTVLYHSLLDGLARNGLEDLALELL--- 537

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           +   CKPDF+ +++V +     G   +   V+++    G       Y   + GL    ++
Sbjct: 538 KTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKV 597

Query: 313 CEAKEL 318
            +A++L
Sbjct: 598 DKARQL 603


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 211/487 (43%), Gaps = 44/487 (9%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           +I  L + + T + + +F E+      +    CNSLL  LA +G  +   ++ ++M    
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-RENSMINGSV-----IAVLIIHGFCK 238
           ++ + + FG+ I   C+  ++   L +L+++   +E+  I+ SV     I   +I G CK
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 239 GKRVEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
             R +E   +++ +R ++ C PD I Y  + + F   G + + + +  +  K GVAP   
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
                + G+    R+                                   SA+ FF    
Sbjct: 456 TVNTLVGGMCRTGRV----------------------------------SSAVNFFVEAQ 481

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            +G      T + L    C  N  ++ +E++  +  +    D   Y  ++S    +GR+ 
Sbjct: 482 RRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMA 541

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  V+ E+K+ G+ PD   YN+L+   CR +      ++  +M  +G   +  TYN LI
Sbjct: 542 DASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +  S+ G+++ A ++   M++ GV P   TY +++   C   N   A E+F        +
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKV 661

Query: 538 LARSILSTFMI-SLCRRGHFLVATKLLRGLS--SDLGHSDSHVILLKSLADAREVEMAIE 594
              +++   +I SLC+      A  L+  +       ++ ++  + K L D +++E   E
Sbjct: 662 PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFE 721

Query: 595 HIKWIQE 601
            +  + E
Sbjct: 722 FMDRMIE 728



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 166/374 (44%), Gaps = 7/374 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D  +Y  +I  L +    Q+   +   ++   +   P+    N L+      G I+   +
Sbjct: 382 DVVIYNTLIDGLCKVGRQQEGLGLMERMRSQ-KGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +FDEM+  GV  + +     +   C   ++   ++   E ++R   M   +V    +I+ 
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRR--GMKGDAVTYTALINA 498

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           FC     E+A ++ +E+    C PD I Y  +   F   G + +   VL + +KLG+ P 
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFN 354
           T  Y   I G     +     E+ + +       D    N LI   S + D + A     
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMR 618

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL-SANDYFTDMESYNVMVSFLCTS 413
            MI+ G VPT++T   +    C     +E +E++K + +A+    +   YN++++ LC +
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
            +++ A  ++++MK  G+ P+ + YN++ +    E  L    +  D+M    C+ +  T 
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 474 NILISKFSEVGEIE 487
            IL    S VGEIE
Sbjct: 739 EILTEWLSAVGEIE 752



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 123/575 (21%), Positives = 238/575 (41%), Gaps = 47/575 (8%)

Query: 26  PARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHH----SLALGFFNW----ASQQ 77
           P  +W       L+QL   DS   S   R+   Y +T      S AL F N+    +   
Sbjct: 59  PGNEWNT---TQLNQLLFTDSPPSSSSPRLF--YQITRRLPSSSQALKFLNYLQNNSPSS 113

Query: 78  PNFTHSPLSY--HSILKSLSLSRQINA-IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           P+ T S LSY   +I +        NA +  + K  K   I L  +   F++ +  + + 
Sbjct: 114 PD-TQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSEL 172

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLL-----AVLASDGYIDNALKMFDEMSHRGVEFS- 188
            +++  +FN       D+ P + N+ L     ++L   G + +ALK+ DEM     + + 
Sbjct: 173 VEESLILFN-------DLDPSVKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNC 225

Query: 189 --TIGFGVFIWKFCENAKLGQVLSMLDEV-----RKRENSMINGSVIAVLIIHGFCKGKR 241
                 G  ++ F    +  + L   DE+     +  E+ ++  S     +I   C+ ++
Sbjct: 226 RPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRK 285

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
               + +  E+       +  A   +       G+      +++K  ++ + P    +  
Sbjct: 286 TNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGI 345

Query: 302 FILGLIVERRICEAKELGEVIVSGK------FTIDDDVL--NALIGSVSSID-PRSAIVF 352
            I  +   RR+ +A E+ E +  GK       +++ DV+  N LI  +  +   +  +  
Sbjct: 346 LINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGL 405

Query: 353 FNFM-IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
              M  +KG  P   T + L    CK  + ++  E++  ++      ++ + N +V  +C
Sbjct: 406 MERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMC 465

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +GR+  A     E +R+G+  D   Y +L+ A C  +    A +L+++M  SGCS +  
Sbjct: 466 RTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAI 525

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            Y  LIS FS+ G +  A  +   + + G+ PD   Y +L+ G C+       FE+  + 
Sbjct: 526 VYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEM 585

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
               +       +T +    + G    A K++R +
Sbjct: 586 EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKM 620


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 125/596 (20%), Positives = 252/596 (42%), Gaps = 51/596 (8%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P LE +L  LG  +   P LV  V+    L   + A+ +F WA +Q    H P +Y+S
Sbjct: 75  WGPTLENSLSALG--EKPLPELVIGVLKR--LKDANTAVNYFQWAEKQTEKVHCPEAYNS 130

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK--- 146
           +L  ++ + + + ++ +L+++ ++     S++   ++ + ++ +  ++AF +   ++   
Sbjct: 131 LLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFK 190

Query: 147 ----------------------------FNCEDIGPEI----CNSLLAVLASDGYIDNAL 174
                                          +++G E+      +L+ V A +G +D AL
Sbjct: 191 FRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAAL 250

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            + DEM    ++   + + V I  F +  K+        E++   + ++   V    +I 
Sbjct: 251 SLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKS--HGLMPDDVTYTSMIG 308

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
             CK  R++EA ++ ++L      P   AY  +   +   G   E   +L++++  G  P
Sbjct: 309 VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 368

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFF 353
               Y   +  L  +RR+ EA  + E +       +    N LI  +       +A+   
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIR 427

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M   G  P + T++ +   LCK  K +E   +++ +       +  +++ ++  L   
Sbjct: 428 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 487

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEA---CCREDLLRPAKKLWDQMFASGCSGNL 470
           GR+ +AY + ++M   G  P    Y SL+ +   C R++      K++ +M  +GCS +L
Sbjct: 488 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE---DGHKIYKEMVHTGCSPDL 544

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              N  +    + GE E    LF  +   G  PDA +Y+ L+ GL +       +E+F  
Sbjct: 545 TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYA 604

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
                 +L     +  +   C+ G    A +LL  +    GH  + V+   S+ D 
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK-GHPPT-VVTYGSVIDG 658



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 206/474 (43%), Gaps = 6/474 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + +++    + +Q++ N+    +  Y  +I          +A+ +   
Sbjct: 301 VTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLER 360

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            K           N +L  L     ++ AL++F+EM    V  +   + + I   C   K
Sbjct: 361 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILIDMLCREGK 419

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           L   L + D++   E + +  +V+ V ++I   CK +++EEA  + + +  + C P+ + 
Sbjct: 420 LNAALEIRDDM---ERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVT 476

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     G V +   + +K    G  P    Y   I       R  +  ++ + +V
Sbjct: 477 FSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV 536

Query: 324 SGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
               + D  ++N  +  V  + +       F  +   G +P   + S L   L K   ++
Sbjct: 537 HTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 596

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  E++  +       D  +YN ++   C SG++ +AY +++EMK KG  P V  Y S++
Sbjct: 597 ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 656

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +   + D L  A  L+++  ++G   N+  Y+ LI  F +VG I+ A  +   +++KG+ 
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 716

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           P+  T+  LL+ L +   +  A   F    +      +   S  +  LCR   F
Sbjct: 717 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF 770



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/481 (21%), Positives = 201/481 (41%), Gaps = 39/481 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++     + + +    +L++ K          Y  I+  L + +  ++A  +F E+
Sbjct: 337 AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 396

Query: 146 KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K    D  P +   N L+ +L  +G ++ AL++ D+M   G+  + +   + I + C+  
Sbjct: 397 K---RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 453

Query: 204 KLGQVLSMLDEVRKR---------------------------------ENSMINGSVIAV 230
           KL +  S+ + +  +                                 +   + G+++  
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 513

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I  F K  R E+  K+  E+    C PD        +     G   +   + ++    
Sbjct: 514 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 573

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G  P    Y   I GL+      E  EL   +      +D    NA+I G   S     A
Sbjct: 574 GFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKA 633

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M  KG  PT+ T  ++   L K ++ DE   +++   +N    ++  Y+ ++  
Sbjct: 634 YQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDG 693

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               GR+ EAY +++E+ +KGL P+V  +N L++A  + + +  A   +  M    C  N
Sbjct: 694 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPN 753

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ILI+    V +   A   +  M + G+ P+  TYT+++ GL +  N+  A  +F+
Sbjct: 754 QITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFS 813

Query: 530 K 530
           +
Sbjct: 814 R 814



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 190/444 (42%), Gaps = 9/444 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+ + ++  L  ++++    S+ + +     T ++  +  +I  L +      A+S++ +
Sbjct: 440 LTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 499

Query: 145 VKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +  +C  + G  +  SL+      G  ++  K++ EM H G          ++    +  
Sbjct: 500 M-LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAG 558

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +  +  ++  E+    +  I  +    ++IHG  K     E +++   ++ + C  D  A
Sbjct: 559 ETEKGRALFREINA--HGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHA 616

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  V + F   G V +   +L++ +  G  P    Y   I GL    R+ EA  L E   
Sbjct: 617 YNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 676

Query: 324 SGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           S    ++  V ++LI   G V  ID   A +    +++KG  P + T + L   L K  +
Sbjct: 677 SNGIKLNVVVYSSLIDGFGKVGRID--EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 734

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +E +  ++ +       +  +Y+++++ LC   +  +A+   QEM++ GL P+   Y +
Sbjct: 735 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 794

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++    +   +  A  L+ +  A+G   +  +YN +I   S   +   A  LF     KG
Sbjct: 795 MISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 854

Query: 501 VAPDATTYTSLLEGLCQETNLQAA 524
                 T   LL+ L +   L+ A
Sbjct: 855 CNIHTKTCVVLLDALHKAECLEQA 878


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 133/572 (23%), Positives = 237/572 (41%), Gaps = 63/572 (11%)

Query: 63  HHSLALGFFNWASQQPNF------------TH--------SPLSYHSILKSLSL-----S 97
           H  LAL F  W  +QP              TH         P  +  ILK LSL     S
Sbjct: 49  HGKLALKFLKWVVKQPGLDTDHIVQLFCITTHILVRARMYDPARH--ILKELSLMSGKSS 106

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI- 156
               A+ +  +    N    D  +  ++   +IQ  ++ + F +     FN     P + 
Sbjct: 107 FVFGALMATYRLCNSNPSVFDILIRVYLREGMIQ--DSLEIFRLMGLYGFN-----PSVY 159

Query: 157 -CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            CN++L  +       +      EM  R +      F + I   C      +   ++   
Sbjct: 160 TCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLM--- 216

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           +K E S    +++    ++H +CK  R + A ++LD + ++    D   Y ++  +    
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRS 276

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
               +  ++L+  RK  + P    Y   + G   E ++  A++L   +++   + +    
Sbjct: 277 NRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTF 336

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           NALI G +S  + + A+  F+ M  KG + T  +   L   LCK  + D     Y  +  
Sbjct: 337 NALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           N       +Y  M+  LC +G L EA  ++ EM + G+DPD+  Y++L+   CR   L+ 
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKT 456

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK++  +++  G S N   Y+ LI     +G ++  +R++  M+ +G  PD  T+  L+ 
Sbjct: 457 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVT 516

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSI---------------LSTFMI--SLCRRGH- 555
            LC+   +  A E F + +  D +L  ++               L  F +   + + GH 
Sbjct: 517 SLCKAGKVAEA-EEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHH 575

Query: 556 --FLVATKLLRGLSSDLGHSDSHVILLKSLAD 585
             F     LL+GL    GH  +    LKSL +
Sbjct: 576 PTFFTYGSLLKGLCKG-GHLIAAEKFLKSLQN 606



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 114/600 (19%), Positives = 237/600 (39%), Gaps = 63/600 (10%)

Query: 54  RVINPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINA 102
           R+I+P  +T+++L  GF N           ++   F  SP  +++++++           
Sbjct: 292 RMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
              +   ++   +      Y  ++  L +      A   +  +K N   +G      ++ 
Sbjct: 352 ALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +G++D A+ M +EMS  G++   + +   I  FC   +L     ++  +  R    
Sbjct: 412 GLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIY-RVGLS 470

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            NG + + LI +  C+   ++E  ++ + + +    PD   + ++       G V E E 
Sbjct: 471 PNGIIYSTLI-YNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEE 529

Query: 283 VLKKKRKLGVAPRT-------NDYRE-----------------------FILGLIVERRI 312
            ++     G+ P         N Y                         F  G ++ + +
Sbjct: 530 FMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLL-KGL 588

Query: 313 CEAKELGEVIVSGKF---------TIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRV 362
           C+    G +I + KF          +D  + N LI ++  S +   A+  F  M+++  +
Sbjct: 589 CKG---GHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSIL 645

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-NDYFTDMESYNVMVSFLCTSGRLREAYG 421
           P   T ++L   LC++ K+   +   K   A  +   +   Y   V  +  +G+ +  + 
Sbjct: 646 PDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFY 705

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
             Q+M + GL  DV   N++++   R   +     L  +M       NL TYNIL+  +S
Sbjct: 706 FRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYS 765

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +   +  +  L+ +M+  G+ PD  T  S++ G+C+   L+   ++    +   V + R 
Sbjct: 766 KRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRH 825

Query: 542 ILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
             +  +   C  G    A  ++      G+S D    D+ V +L      +E  M +  +
Sbjct: 826 TFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEM 885



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 173/428 (40%), Gaps = 18/428 (4%)

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           N V F+C          L+    S G    A  +FDEM+  G   +   +G  +   C+ 
Sbjct: 542 NAVSFDC----------LINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKG 591

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L      L  ++    ++   +V+   +I   CK   +++A  +  E+  R   PD  
Sbjct: 592 GHLIAAEKFLKSLQNVPAAV--DTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSF 649

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEAKELGEV 321
            Y  +       G      +  K+    G + P    Y  F+ G+    +        + 
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQ 709

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP--RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +     T D    NA+I   S +    ++  + F  M  + + P L+T + L     KR 
Sbjct: 710 MDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFE-MGNQNQGPNLTTYNILLHGYSKRK 768

Query: 380 KSDELVEVYKVLSANDYFTD-MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
                  +Y+ +  +    D +  Y++++  +C S  L     +++    +G++ D   +
Sbjct: 769 HVSTSFMLYRSMILSGILPDKLTCYSIILG-ICESNMLEIGLKILKAFICRGVEVDRHTF 827

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N L+  CC    +  A  + + M + G S +  T + ++S  +     + +  + H M +
Sbjct: 828 NMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSK 887

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           +G++P++  Y  LL GLC+  +++ AF V  + + H +       S  + +L + G    
Sbjct: 888 QGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 559 ATKLLRGL 566
           A+ LLR +
Sbjct: 948 ASLLLRSM 955



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 153/409 (37%), Gaps = 37/409 (9%)

Query: 156  ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
            +CN+L+  +   G +D A+ +F EM  R +   +  +   I   C   K    +    E 
Sbjct: 615  MCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEA 674

Query: 216  RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              R N ++   V+    + G  K  + +  F    ++       D +    + + +  MG
Sbjct: 675  EARGN-LVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMG 733

Query: 276  SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVL 334
             + +   +L +       P    Y   + G    + +  +  L   +I+SG         
Sbjct: 734  KIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCY 793

Query: 335  NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            + ++G   S      +      I +G      T + L    C   + +   ++  V+++ 
Sbjct: 794  SIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSL 853

Query: 395  DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                D  + + +VS L  + R +E+  V+ EM ++G+ P+   Y  L+   CR   ++ A
Sbjct: 854  GISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTA 913

Query: 455  KKLWDQMFASG-CSGN----------------------------------LKTYNILISK 479
              + ++M A   C  N                                  + ++  L+  
Sbjct: 914  FVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHL 973

Query: 480  FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            F + G +  AL L   M   G+  D  +Y  L+ GLC + ++  AFE+F
Sbjct: 974  FCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELF 1022



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 119/287 (41%), Gaps = 38/287 (13%)

Query: 157  CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            C S++  +     ++  LK+      RGVE     F + I K C N ++     M++ + 
Sbjct: 792  CYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMT 851

Query: 217  KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
                S+   +  A++ +    +  R +E+  VL E+                        
Sbjct: 852  SLGISLDKNTCDAIVSV--LNRNHRFQESRMVLHEMS----------------------- 886

Query: 277  VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                        K G++P +  Y   + GL     I  A  + E +++ K    +   +A
Sbjct: 887  ------------KQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESA 934

Query: 337  LIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            ++ +++       A +    M++   VPT+++ + L    CK     E +E+  V+S   
Sbjct: 935  MVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCG 994

Query: 396  YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
               D+ SYNV+++ LC  G +  A+ + +EMKR G   +V+ Y +L+
Sbjct: 995  LKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALV 1041


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 189/408 (46%), Gaps = 8/408 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +LA L    +   A+ +F ++   G++ S +   + +  +C    +  + S+L ++ K
Sbjct: 14  NHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILK 73

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                   S+    +I G C   +  EA    D +     K D ++Y I+      MG  
Sbjct: 74  MGYE--PNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMG-- 129

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNA 336
            E    ++  RK  V      Y   I  L   + + +A  L  E+I  G F  +    + 
Sbjct: 130 -ETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFP-NVYTFSI 187

Query: 337 LIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ ++      + A+     M++KG  P + T   +    C  N+ ++ + ++ V+    
Sbjct: 188 LVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEG 247

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++  YN++++ LC   R+ EA  + +EM  K ++PDV  YN L++  C+   +  + 
Sbjct: 248 VEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSL 307

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L D+M + G + ++ TYN L+    +   ++ A+ L   + ++G+ P+  TYT+L++GL
Sbjct: 308 ELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGL 367

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           C++  L+ A+ +F + +     +     +  +  LC++G F  A  LL
Sbjct: 368 CKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALL 415



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/532 (21%), Positives = 216/532 (40%), Gaps = 41/532 (7%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           +  I+ SL++  +   A S+F +++FN   I P I     L+      G I     +  +
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFN--GIKPSIVTLTILMNCYCHTGGITFLFSILTK 70

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +   G E ++I F   I   C N +  + L   D V      +    V   ++++G CK 
Sbjct: 71  ILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKL--DQVSYAILMNGLCKM 128

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
                A ++   LR      D + Y  + +       V +   +  +    G+ P    +
Sbjct: 129 GETRAAMQM---LRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTF 185

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              +  L  +R+  +A  L  +++      +     A++     ++    A+  FN M++
Sbjct: 186 SILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQ 245

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P +   + +   LCK+ + DE + ++K +       D+ +YN+++  LC  G++  
Sbjct: 246 EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIST 305

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           +  ++ EM+  G   D+  YNSL+ A C+   L  A  L  ++   G   N+ TY  LI 
Sbjct: 306 SLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLID 365

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              + G +E A  +F  +L +G      TY  ++ GLC++     A  + ++  ++  + 
Sbjct: 366 GLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIP 425

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
                 T + +L  +G  +   KLL     RGLS  L       + + ++AD  +     
Sbjct: 426 DAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKKK----VNMTTIADLND----- 476

Query: 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGA 645
              KW                +ASL         L+LL  L  KC  S  G 
Sbjct: 477 ---KWAA--------------YASLEDGMIHPIFLMLLKCLSIKCSGSMEGV 511



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 105/235 (44%), Gaps = 20/235 (8%)

Query: 43  LRDSLSPSLV--ARVINPYLLTHH-SLALGFFNWASQQ---PNFTHSPLSYHSILKSLSL 96
           ++  + P++V    +++ Y L +  + AL  FN   Q+   PN       Y+ I+  L  
Sbjct: 209 MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNV----WCYNIIINGLCK 264

Query: 97  SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI 156
            ++++   ++ K++   KI  D   Y  +I  L +      +  + +E++   + +    
Sbjct: 265 KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIIT 324

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            NSLL  L  + ++D A+ +  E+  +G++ +   +   I   C++ +L     +  E+ 
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEI- 383

Query: 217 KRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
                +  G  I V    ++I+G CK    +EA  +L  +    C PD ++Y  +
Sbjct: 384 -----LTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETI 433



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 61/132 (46%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P +  +N ++ +  + +    A  L+ Q+  +G   ++ T  IL++ +   G I     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              +L+ G  P++ T+T+L++G+C       A    +  V H   L +   +  M  LC+
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCK 127

Query: 553 RGHFLVATKLLR 564
            G    A ++LR
Sbjct: 128 MGETRAAMQMLR 139


>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 756

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 142/637 (22%), Positives = 276/637 (43%), Gaps = 54/637 (8%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R WT  L+ ++  L        SLV  V++      H  AL FF W  +     H   ++
Sbjct: 97  RAWTTRLQNSIRDL--VPEWDHSLVYNVLHGAKKLEH--ALQFFRWTERSGLIRHDRDTH 152

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
             ++K L   +++N    +L  +    +  D  ++  +I S  +    Q++  +F ++K 
Sbjct: 153 MKMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMK- 211

Query: 148 NCEDIGPEIC----NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
              D+G E      N+L  V+   G    A + F++M   GVE +   + + +W F  + 
Sbjct: 212 ---DLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSL 268

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +L   L   D+++ R   +   +V    II+G+C+ K+++EA K+  E++    +P  + 
Sbjct: 269 RLETALRFFDDMKTR--GISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVT 326

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +  +  V +   + ++ R  G+ P    Y   + GL    ++ EAK + + ++
Sbjct: 327 YTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMM 386

Query: 324 SGKFTIDDD--VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR--- 378
           +      D+   L  L+    + D  +A      M              L +N CK    
Sbjct: 387 AKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAY 446

Query: 379 NKS----DELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           N++    D L+E   +L   D   +ME  +YN ++ +LC +G+  +A  + +++ ++G+ 
Sbjct: 447 NRAIKLLDTLIEKEIILRHQDTL-EMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ 505

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            D    N+L+    +E     + ++   M   G       Y +LI  +   GE   A   
Sbjct: 506 -DQDALNNLIRGHAKEGNPESSYEILKIMSRRGVPREANAYELLIKSYMSKGEPGDAKTA 564

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS--ILSTFMISL 550
             +M+E G  PD+  + S++E L ++  +Q A  V    ++ +V +  +  +++  + +L
Sbjct: 565 LDSMVEDGHVPDSALFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEAL 624

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610
             RGH   A   +  L+ + GH+     LL  L++  +   A++            L + 
Sbjct: 625 LMRGHVEEALGRIDLLNQN-GHTADLDSLLSVLSEKGKTIAALK------------LLDF 671

Query: 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647
             E   SL  SSY            +K LD+ +GAGK
Sbjct: 672 GLERDLSLDFSSY------------DKVLDALLGAGK 696


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 206/459 (44%), Gaps = 31/459 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL-SMLDEVR 216
           N +L  L S G +  A ++ D M+ +          +  +  C N   G +   ++DE  
Sbjct: 134 NEILQRLCSRGKLTVAARLIDVMARKS--------QIPHFPSCTNLIRGFIRKGLVDEAC 185

Query: 217 KRENSMI-----NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           K  N M+       ++   ++I G CK  R+  A  +++++ +  C PD I Y  +    
Sbjct: 186 KTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCL 245

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI----VSGKF 327
              G+  +     + + + G  P    Y   ++ L+   + C A    EV+    + G +
Sbjct: 246 FDKGNFNQAVNFWRDQLRKGCPPYLITY-TVLIELVC--KYCGAARALEVLEDMAMEGCY 302

Query: 328 TIDDDVLNALIGSVSSIDP--RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
             D    N+L+   S       +A+V  N ++  G  P   T + L  +L      DE+ 
Sbjct: 303 P-DIVTYNSLVNLTSKQGKYEDTALVILN-LLSHGMQPNAVTYNTLIHSLINHGYWDEVD 360

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++ K+++         +YN++++ LC SG L  A      M  +   PD+  YN+L+   
Sbjct: 361 DILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGL 420

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+E  +    +L + +  + CS  L TYNI+I   + +G +E A  L+  M++KG+ PD 
Sbjct: 421 CKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDE 480

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            T++SL  G C+   L+ A E+  +    +  +  +     ++ LCR+    +A ++L  
Sbjct: 481 ITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLDL 540

Query: 566 LSSDLGHSDSHVI--LLKSLADAREVEMAIE-H---IKW 598
           +     + D  +   L+K++AD   ++ A + H   IKW
Sbjct: 541 MVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKW 579



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           ND  T+    N ++  LC+ G+L  A  +I  M RK   P      +L+    R+ L+  
Sbjct: 128 NDEMTN----NEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDE 183

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A K  ++M  SG   +  TYN++I    + G +  AL L  +M   G +PDA TY S++ 
Sbjct: 184 ACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIR 243

Query: 514 GLCQETNLQAAFEVFNKSVN 533
            L  + N       FN++VN
Sbjct: 244 CLFDKGN-------FNQAVN 256


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 125/564 (22%), Positives = 217/564 (38%), Gaps = 113/564 (20%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
           + L   T+HQ+ L       L      P+ + H      FF WA   P++THS  S  S+
Sbjct: 37  STLTSTTIHQVILH------LKQHRYEPFFIFH------FFKWAQSIPHYTHSLHSSWSM 84

Query: 91  LKSLSLSRQINAIDSVLKQVKVNKI-----------------TLDSSVYRFIIPSLIQGK 133
           +  L+  R       VL ++   +I                  ++S V  +I+    + K
Sbjct: 85  IHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSLVRIHDDPEVNSHVLSWIVIHYAKSK 144

Query: 134 NTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
            T  A  VF ++   C ++ P +  C  L+  L  DG      K++  M   GV      
Sbjct: 145 MTHDAVQVFEQMSL-C-NLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGV------ 196

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
                                          +    +   +IH   K + VE A  +L+E
Sbjct: 197 -------------------------------VPNIYVYNCLIHACSKSRDVERAEFILNE 225

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           + ++   PD   Y  +   +   G  +E   V  K  + G+      Y   I G   E +
Sbjct: 226 MEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGK 285

Query: 312 ICEA-KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + EA +  GE+                                     K  +P   T + 
Sbjct: 286 MREAMRMFGEI-------------------------------------KDAIPNHVTYTT 308

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L    CK N+ +E + + +++ A   +  + +YN ++  LC+ GR+R+A  ++ EM  + 
Sbjct: 309 LIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERK 368

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  D    N+L+ A C+   L  A K   +M  +G + N  TY  LI  F +  E+E A 
Sbjct: 369 VQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAK 428

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L   ML+ G +P+  TY+ +++  C++ N  A   + ++ ++    L  S+    +  L
Sbjct: 429 ELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRL 488

Query: 551 CRRGHFLVATKLL-----RGLSSD 569
           C+      A KLL     +G+S D
Sbjct: 489 CKIERIECAEKLLYHMEGKGISGD 512



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 2/213 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L   + L  +L K   +  + +VYK +  +    ++  YN ++     S  +  A  +
Sbjct: 163 PHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFI 222

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ KG+ PD+  YN+L+   C++ L   A  + D+M   G + ++ +YN LI  F +
Sbjct: 223 LNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCK 282

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G++  A+R+F  +  K   P+  TYT+L++G C+    + A  +    V   +      
Sbjct: 283 EGKMREAMRMFGEI--KDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVT 340

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            ++ +  LC  G    A KLL  +S     +DS
Sbjct: 341 YNSILRKLCSDGRIRDANKLLHEMSERKVQADS 373



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  V ++M    L P +     LM +  ++ +     K++ +M   G   N+  YN L
Sbjct: 147 HDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCL 206

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SV 532
           I   S+  ++E A  + + M  KGV PD  TY +L+   C++     A  V +K     +
Sbjct: 207 IHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGI 266

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
           N D++   S++  F    C+ G    A ++   +   + +  ++  L+     A E E A
Sbjct: 267 NLDIVSYNSLIYGF----CKEGKMREAMRMFGEIKDAIPNHVTYTTLIDGYCKANEFEEA 322

Query: 593 I 593
           +
Sbjct: 323 L 323


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 114/532 (21%), Positives = 228/532 (42%), Gaps = 53/532 (9%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W P  E TL  L  +    P  V  V+    L   + A+ +F W  ++    H P SY+S
Sbjct: 48  WGPSAENTLSALSFKPQ--PEFVIGVLRR--LKDVNRAIEYFRWYERRTELPHCPESYNS 103

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  ++  R  +A+D +L ++ V       +    ++   ++    ++ + V   ++   
Sbjct: 104 LLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK 163

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                    +L+   ++  + D  L +F +M   G E +   F   I  F +  ++   L
Sbjct: 164 FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSAL 223

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR---- 265
           S+LDE+  + +S+    V+  + I  F K  +V+ A+K   E+     KPD + Y     
Sbjct: 224 SLLDEM--KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281

Query: 266 IVAEEFKLMGSV--FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           ++ +  +L  +V  FE    L+K R++   P T  Y   I+G                  
Sbjct: 282 VLCKANRLDEAVEMFEH---LEKNRRV---PCTYAYNTMIMGY----------------- 318

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                          GS    D   A         KG +P++   + +   L K  K DE
Sbjct: 319 ---------------GSAGKFD--EAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 361

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            ++V++ +   D   ++ +YN+++  LC +G+L  A+ +   M++ GL P+V   N +++
Sbjct: 362 ALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVD 420

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+   L  A  ++++M    C+ +  T+  LI    +VG ++ A +++  ML+     
Sbjct: 421 RLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT 480

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           ++  YTSL++        +   +++   +N +      +L+T+M  + + G 
Sbjct: 481 NSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGE 532



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 199/448 (44%), Gaps = 10/448 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + +++    + + ++ N+    +  Y  +I          +A+S+   
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCENA 203
            +           N +L  L   G +D ALK+F+EM        ST  + + I   C   
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLST--YNILIDMLCRAG 391

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           KL     + D ++K    +        +++   CK ++++EA  + +E+  + C PD I 
Sbjct: 392 KLDTAFELRDSMQKA--GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEIT 449

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEV 321
           +  + +    +G V +   V +K   L    RTN   Y   I       R  +  ++ + 
Sbjct: 450 FCSLIDGLGKVGRVDDAYKVYEKM--LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507

Query: 322 IVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +++   + D  +LN  +  +  + +P      F  +  +  VP   + S L   L K   
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
           ++E  E++  +       D  +YN+++   C  G++ +AY +++EMK KG +P V  Y S
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +++   + D L  A  L+++  +     N+  Y+ LI  F +VG I+ A  +   +++KG
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVF 528
           + P+  T+ SLL+ L +   +  A   F
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEALVCF 715



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 103/485 (21%), Positives = 203/485 (41%), Gaps = 47/485 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++     + + +   S+L++ +          Y  I+  L +     +A  VF E+
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   +D  P +   N L+ +L   G +D A ++ D M   G+  +     + + + C++ 
Sbjct: 370 K---KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           KL +  +M +E+  +        +    +I G  K  RV++A+KV +++   +C+ + I 
Sbjct: 427 KLDEACAMFEEMDYK--VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIV 484

Query: 264 YRIVAEEFKLMGSVFEREVVLK-------------------------------------K 286
           Y  + + F   G   +   + K                                     K
Sbjct: 485 YTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIK 544

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
            R+    P    Y   I GLI      E  EL   +      +D    N +I G      
Sbjct: 545 ARRF--VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              A      M  KG  PT+ T  ++   L K ++ DE   +++   +     ++  Y+ 
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++      GR+ EAY +++E+ +KGL P++  +NSL++A  + + +  A   +  M    
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C+ N  TY ILI+   +V +   A   +  M ++G+ P   +YT+++ GL +  N+  A 
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782

Query: 526 EVFNK 530
            +F++
Sbjct: 783 ALFDR 787



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 142/318 (44%), Gaps = 7/318 (2%)

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
           +M +E++ R    +  +    ++IHG  K     E +++   ++ + C  D  AY IV +
Sbjct: 538 AMFEEIKARR--FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F   G V +   +L++ +  G  P    Y   I GL    R+ EA  L E   S +  +
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655

Query: 330 DDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           +  + ++LI   G V  ID   A +    +++KG  P L T ++L   L K  + +E + 
Sbjct: 656 NVVIYSSLIDGFGKVGRID--EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALV 713

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
            ++ +       +  +Y ++++ LC   +  +A+   QEM+++G+ P    Y +++    
Sbjct: 714 CFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLA 773

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   +  A  L+D+  A+G   +   YN +I   S       A  LF     +G+     
Sbjct: 774 KAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNK 833

Query: 507 TYTSLLEGLCQETNLQAA 524
           T   LL+ L +   L+ A
Sbjct: 834 TCVVLLDTLHKNDCLEQA 851



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+++T   +     K NK  E  +V +++    +     +Y  ++            
Sbjct: 128 GFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + Q+M+  G +P V  + +L+    +E  +  A  L D+M +S    ++  YN+ I  
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F +VG+++ A + FH +   G+ PD  TYTS++  LC+   L  A E+F     +  +  
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +T ++     G F  A  LL
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLL 331



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 144/350 (41%), Gaps = 42/350 (12%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           L+  L   G+ +   ++F  M  +G    T  + + I  FC+  K+ +   +L+E++ + 
Sbjct: 558 LIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG 617

Query: 219 -ENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E +++  GSVI      G  K  R++EA+ + +E + +  + + + Y  + + F  +G 
Sbjct: 618 FEPTVVTYGSVI-----DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E  ++L++  + G+ P    +   +  L+      +A+E+ E                
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALV------KAEEINE---------------- 710

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       A+V F  M E    P   T   L   LCK  K ++    ++ +     
Sbjct: 711 ------------ALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
                SY  M+S L  +G + EA  +    K  G  PD + YN+++E     +    A  
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFS 818

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           L+++    G   + KT  +L+    +   +E A  +   + E G A  A 
Sbjct: 819 LFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAA 868



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 8/267 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F     SY  ++  L  +   N    +   +K     LD+  Y  +I    +     KA+
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +  E+K    +       S++  LA    +D A  +F+E   + +E + + +   I  F
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 200 CENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
            +  ++ +   +L+E+ ++    N     S++  L+     K + + EA      ++  +
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV-----KAEEINEALVCFQSMKELK 722

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C P+ + Y I+      +    +  V  ++ +K G+ P T  Y   I GL     I EA 
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSS 343
            L +   +     D    NA+I  +S+
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSN 809


>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 733

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 124/547 (22%), Positives = 246/547 (44%), Gaps = 32/547 (5%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R WT  L+ ++  L       PSLV  V++      H  AL F+ W  +   FTH+P + 
Sbjct: 67  RAWTTRLQNSIRSL--VPEFDPSLVYNVLHGAASPEH--ALQFYRWVERAGLFTHTPETT 122

Query: 88  HSILKSLSLSRQINAIDSVL---KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
             I++ L    ++N    +L    +  V++  +    +  +I S  +    Q++  +F +
Sbjct: 123 LKIVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESVKLFKK 182

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +K    D   +  ++L  V+   G    A + ++ M   GV+ +   F + +W    + +
Sbjct: 183 MKELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLR 242

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   +   ++++ R   ++   V    +I+G+ + K+V+EA K+  E++ R+  P+ I++
Sbjct: 243 LDTAVRFYEDMKSR--GILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISF 300

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIV 323
             + + +   G + +   V ++ +  GV P    +   + GL    ++ EA++ LGE++ 
Sbjct: 301 TTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVE 360

Query: 324 SGKFTIDDDVLNALI------GSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
                 D+ +   ++      G + ++ D   A+V  +   E G          L ++ C
Sbjct: 361 RYIAPKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGV------LIESFC 414

Query: 377 KRNKS-------DELVEVYKVL-SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           K N         D+L+E   VL   ND   +  +YN+M+ +LC  GR  +A    +++ +
Sbjct: 415 KANVYDKAEKLLDKLIEKEIVLRPQNDSEMEPSAYNLMIGYLCEHGRTGKAETFFRQLLK 474

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG+   V+F N+L+    +E     A ++   M   G + ++ +Y +LI  +   GE   
Sbjct: 475 KGVQDSVAF-NNLIRGHSKEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPAD 533

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A      MLE G  P+++ Y S++E L  +  +Q A  V    V         ++   + 
Sbjct: 534 AKTALDGMLESGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDLVLKILE 593

Query: 549 SLCRRGH 555
           +L  RGH
Sbjct: 594 ALLLRGH 600



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/529 (20%), Positives = 217/529 (41%), Gaps = 60/529 (11%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++ +L  + LS +++      + +K   I  D   Y  +I    + K   +A  +F E+
Sbjct: 229 TFNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEM 288

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K    DI P + +  ++L    + G ID+ALK+F+EM   GV+ + + F   +   C+  
Sbjct: 289 K--GRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAE 346

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           K+ +   +L E+ +R  +  + ++  + ++   CK   ++ A  VL  +       +   
Sbjct: 347 KMAEARDVLGEMVERYIAPKDNALF-MKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGH 405

Query: 264 YRIVAEEF----------KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           Y ++ E F          KL+  + E+E+VL+ +    + P   +    ++G +     C
Sbjct: 406 YGVLIESFCKANVYDKAEKLLDKLIEKEIVLRPQNDSEMEPSAYN---LMIGYL-----C 457

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           E    G+                            A  FF  +++KG V      +NL +
Sbjct: 458 EHGRTGK----------------------------AETFFRQLLKKG-VQDSVAFNNLIR 488

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              K    D   E+ K++       D++SY +++      G   +A   +  M   G  P
Sbjct: 489 GHSKEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLESGHLP 548

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           + S Y S+ME+   +  ++ A ++   M   G   N+     ++      G +E AL   
Sbjct: 549 ESSLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDLVLKILEALLLRGHVEEALGRI 608

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             ++  G  PD   +  LL  LC++    AA ++ +  +  D ++  SI    + +L   
Sbjct: 609 DLLMHNGCEPD---FDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKVLDALLAA 665

Query: 554 GHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           G  L A  +L     +G S+D    D  +  L    + ++ ++    IK
Sbjct: 666 GKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIK 714



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 10/245 (4%)

Query: 328 TIDDDVLNALIGSVSSIDPRSAIV-----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
            + +D   +LI S      R+ IV      F  M E G   T+ +   L K + +R +  
Sbjct: 154 AVTEDAFVSLIDSYG----RAGIVQESVKLFKKMKELGLDRTVKSYDALFKVILRRGRYM 209

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                Y  +          ++N+++  +  S RL  A    ++MK +G+ PDV  YN+L+
Sbjct: 210 MAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLI 269

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
               R   +  A+KL+ +M       N+ ++  ++  +   G I+ AL++F  M   GV 
Sbjct: 270 NGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVK 329

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL-CRRGHFLVATK 561
           P+  T+++LL GLC    +  A +V  + V   +    + L   M+S  C+ G    A  
Sbjct: 330 PNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNALFMKMMSCQCKAGDLDAAAD 389

Query: 562 LLRGL 566
           +L+ +
Sbjct: 390 VLKAM 394


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 204/496 (41%), Gaps = 37/496 (7%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q    T S ++ + +L+       I   ++V  ++ V  +  DSS Y+ ++    +    
Sbjct: 174 QNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKI 233

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           Q+A      +           C  +L  L  +G ++ A+  F +M   G + + I F   
Sbjct: 234 QEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSL 293

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RI 254
           I   C+   + Q   ML+E+ +  N           +I G CK    E+AF++  +L R 
Sbjct: 294 IDGLCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 351

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              KP+   Y  +   +     +   E++  + ++ G+ P  N Y   I G       C+
Sbjct: 352 DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH------CK 405

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           A   G                             A    N M ++G +P + T +    +
Sbjct: 406 AGSFGR----------------------------AYELMNLMGDEGFMPNIYTYNAAIDS 437

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK++++ E  E+     +     D  +Y +++   C    + +A      M + G + D
Sbjct: 438 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEAD 497

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +   N L+ A CR+  ++ +++L+  + + G     +TY  +IS + + G+I+ AL+ FH
Sbjct: 498 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFH 557

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           NM   G  PD+ TY SL+ GLC+++ +  A +++   ++  +        T     C+R 
Sbjct: 558 NMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRN 617

Query: 555 HFLVATKLLRGLSSDL 570
               A  LL  L   L
Sbjct: 618 DSANAMILLEPLDKKL 633


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 171/376 (45%), Gaps = 9/376 (2%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           + N L+  L   G  D+A ++       G   + + +G     +C   +LG    ++  +
Sbjct: 105 LANRLVRDLCRRGRPDDAERVVGAC---GPAATVVAYGALTDGYCRAGRLGDARRVVGGM 161

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             + N+          +IH  C+  +V +A  VLD++  R C PD + Y I+ E      
Sbjct: 162 PVQPNAYTYNP-----LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGR 216

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +   ++   R  G  P    Y   + G+  E  + +A EL   + S          N
Sbjct: 217 GYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYN 276

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            ++  + S +    A      M+ +   P  +T + +  +LC++    + +++ + +S +
Sbjct: 277 TVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKH 336

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN +++ LC    +  A G++ +MK  G  PD+  YN+L++  C       A
Sbjct: 337 GCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDA 396

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           ++L D M  +GC  +  T+N LI    + G +  A+ +F  M +KG  P++ TY++++ G
Sbjct: 397 EELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISG 456

Query: 515 LCQETNLQAAFEVFNK 530
           L + T L  A E+FN+
Sbjct: 457 LAKATKLDQALELFNE 472



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 195/427 (45%), Gaps = 14/427 (3%)

Query: 166 SDGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +DGY     + +A ++   M    V+ +   +   I   CE  ++   LS+LD++  R  
Sbjct: 142 TDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR-- 196

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
                 V   +++   CKG+   +A +++D +R   C P+ + Y ++ +     G V + 
Sbjct: 197 GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA 256

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             +L+     G  P T +Y   + GL    R  +A EL   ++      ++   N +I S
Sbjct: 257 LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYS 316

Query: 341 VSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           +      + AI     M + G    + T + +   LC++   D  + +   + +     D
Sbjct: 317 LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 376

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + +YN ++  LC++ +  +A  ++  M + G  PD   +N+L+   C++ L+  A +++ 
Sbjct: 377 IVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 436

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           QM   GC+ N  TY+ +IS  ++  +++ AL LF+ M  KG  PD   Y  L E L  + 
Sbjct: 437 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDD 495

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHV 577
            ++ A +   K  +  +     + +  ++ LCR G    A  ++  + S     D  ++V
Sbjct: 496 TIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYV 555

Query: 578 ILLKSLA 584
           IL++ LA
Sbjct: 556 ILIEGLA 562



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 199/475 (41%), Gaps = 47/475 (9%)

Query: 77  QPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN +T++PL     + +L    Q+    SVL  +       D   Y  ++ +  +G+  
Sbjct: 164 QPNAYTYNPL-----IHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGY 218

Query: 136 QKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A  + + ++   E   P     N L+  +  +G +D+AL++   +   G + ST+ + 
Sbjct: 219 RQAMELIDLMRA--EGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYN 276

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +   C   + G    ++ E+  REN   N +   V +I+  C+   +++A ++L+++ 
Sbjct: 277 TVLKGLCSAERWGDADELVTEML-RENCPPNEATFNV-VIYSLCRKGLLQQAIQLLEKMS 334

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C  + + Y  +        +V     +L K +  G  P    Y   + GL    +  
Sbjct: 335 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWV 394

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A+EL                                   + M + G +P   T + L  
Sbjct: 395 DAEEL----------------------------------MDNMTQNGCLPDNVTFNTLIG 420

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC++    + +EV+K +       +  +Y+ ++S L  + +L +A  +  EM  KG +P
Sbjct: 421 FLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNP 480

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D   Y  L E    +D +  A +   ++  SG S +   YN ++      G+ E A+ + 
Sbjct: 481 D-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 539

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
             M+  G  PD  TY  L+EGL  E  L  A E+  K  + DV++   I S  ++
Sbjct: 540 AYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALL 594



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 174/375 (46%), Gaps = 15/375 (4%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP--DFIAYRIVAEEFKLMGSVFEREVV 283
           + +A  ++   C+  R ++A +V     +  C P    +AY  + + +   G + +   V
Sbjct: 103 AALANRLVRDLCRRGRPDDAERV-----VGACGPAATVVAYGALTDGYCRAGRLGDARRV 157

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           +     + V P    Y   I  L    ++ +A  + + ++      D    N L+  +  
Sbjct: 158 VGG---MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK 214

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
               R A+   + M  +G  P   T + L   +C     D+ +E+ + L ++       +
Sbjct: 215 GRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVN 274

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN ++  LC++ R  +A  ++ EM R+   P+ + +N ++ + CR+ LL+ A +L ++M 
Sbjct: 275 YNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS 334

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             GC+ N+ TYN +I+   E   ++GA+ L   M   G  PD  TY +LL+GLC      
Sbjct: 335 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWV 394

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG---HSDSHVIL 579
            A E+ +    +  +      +T +  LC++G  + A ++ + +  D G   +S ++  +
Sbjct: 395 DAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQM-PDKGCTPNSITYSTI 453

Query: 580 LKSLADAREVEMAIE 594
           +  LA A +++ A+E
Sbjct: 454 ISGLAKATKLDQALE 468



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           ++AI+ V KQ+     T +S  Y  II  L +     +A  +FNE+    +   P+    
Sbjct: 429 VDAIE-VFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH--KGFNPDKIYQ 485

Query: 160 LLA-VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           LLA  L  D  I+ A++   ++   G+   T+ +   +   C N K    + ++      
Sbjct: 486 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM--AYMV 543

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
            +  +   +  V++I G      + EA     EL I+ C  D +   ++  E  L+
Sbjct: 544 SSGCMPDDLTYVILIEGLAYEGYLNEAR----ELLIKLCSRDVLVNSLIKSEALLL 595


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/542 (21%), Positives = 234/542 (43%), Gaps = 28/542 (5%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           R   D+A     A +S  NR   AR     +  T+H  G+       L+           
Sbjct: 55  RALADVARHSPAAAVSRYNRM--ARAGAGKVTPTVHTYGI-------LIGCCCRA----- 100

Query: 64  HSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSV 121
             L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       D   
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFS 160

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICN--SLLAVLASDGYIDNALK 175
              ++  L     +Q+A  + + +    +D G    P++ +  +++     +G  D A  
Sbjct: 161 CTILLKGLCDENRSQEALELLHMMA---DDRGGGSAPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            + EM  R +    + +   I   C+   + + + +L  + K  N ++   +    I+HG
Sbjct: 218 TYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK--NGVMPNCMTYNSILHG 275

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +C  ++ +EA   L ++R    +PD + Y  + +     G   E   +     K G+ P 
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
              Y   + G   +  + E   L +++V      D  V N LI + +  +    A++ F+
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M + G  P + T   +   LCK    D+ +  ++ +       ++  Y  ++  LC   
Sbjct: 396 KMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A  +I EM  +G+  +  F+NS++ + C+E  +  ++KL+D M   G   N+ TY+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  +   G+++ A +L  +M   G+ PD  TY +L+ G C+ + +  A  +F + V+ 
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 535 DV 536
            V
Sbjct: 576 GV 577



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 204/445 (45%), Gaps = 21/445 (4%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +  ++ KA+S ++E+      I P++   +S++A L     +D A++
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLD--RRISPDVVTYSSIIAALCKGQAMDKAME 252

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +   M   GV  + + +   +  +C + +  + +  L ++R   + +    V    ++  
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS--DGVEPDVVTYNSLMDY 310

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R  EA K+ D +  R  +PD   Y  + + +   G++ E   +L    + G+ P 
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD 370

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVF 352
            + +   I     + ++ EA  +   +       +     A+IG +    S+D   A+++
Sbjct: 371 HHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD--DAMLY 428

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLC---KRNKSDELV--EVYKVLSANDYFTDMESYNVMV 407
           F  MI++G  P +   ++L  +LC   K +K++EL+   + + +  N  F     +N ++
Sbjct: 429 FEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIF-----FNSII 483

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  GR+ E+  +   M R G+ P+V  Y++L++  C    +  A KL   MF+ G  
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +  TYN LI+ +  V  ++ AL LF  M+  GV+P+  TY  +L+GL       AA E+
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 528 FNKSVNHDVMLARSILSTFMISLCR 552
           +         L  S  +  +  LC+
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCK 628



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 173/408 (42%), Gaps = 5/408 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+      G +D        +  +G     I F   +   C + +    + ++   R  E
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLR-RMTE 151

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL---RIRECKPDFIAYRIVAEEFKLMGS 276
            S +       +++ G C   R +EA ++L  +   R     PD ++Y  V   F   G 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +      +     ++P    Y   I  L   + + +A E+   +V      +    N+
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ G  SS  P+ AI F   M   G  P + T ++L   LCK  +S E  +++  ++   
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y  ++    T G L E + ++  M R G+ PD   +N L+ A  +++ +  A 
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++ +M   G + N+ TY  +I    + G ++ A+  F  M+++G+ P+   YTSL+  L
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           C       A E+  + ++  + L     ++ + S C+ G  + + KL 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 109/558 (19%), Positives = 224/558 (40%), Gaps = 59/558 (10%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH---------SP--LSYHSILKSLSLSRQINAIDSV 106
           P ++++ ++  GFF        ++          SP  ++Y SI+ +L   + ++    V
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L  +  N +  +   Y  I+      +  ++A       K   + + P++   NSL+  L
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLK--KMRSDGVEPDVVTYNSLMDYL 311

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G    A K+FD M+ RG+E     +   +  +     L ++ ++LD + +  N +  
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR--NGIHP 369

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
              +  ++I  + K ++V+EA  V  ++R     P+ + Y  V       GSV +  +  
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS- 343
           ++    G+ P    Y   I  L +  +  +A+EL   ++     ++    N++I S    
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489

Query: 344 ---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              I+       F+ M+  G  P + T S L    C   K DE  ++   + +     D 
Sbjct: 490 GRVIESEK---LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDC 546

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV------------------------- 435
            +YN +++  C   R+ +A  + +EM   G+ P++                         
Sbjct: 547 VTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVG 606

Query: 436 ----------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
                     S YN ++   C+ +L   A +++  +  +      +T+NI+I    +VG 
Sbjct: 607 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + A  LF      G+ P+  TY  + E +  +  L+   ++F    ++   +   +L+ 
Sbjct: 667 NDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNF 726

Query: 546 FMISLCRRGHFLVATKLL 563
            +  L +RG    A   L
Sbjct: 727 IVRELLQRGEITRAGTYL 744



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 192/433 (44%), Gaps = 6/433 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  + ++L  +  N I  D  V+  +I +  + +   +A  VF+++
Sbjct: 338 TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKM 397

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + +  +       +++ +L   G +D+A+  F++M   G+  + I +   I   C   K 
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+  R   +   ++    IIH  CK  RV E+ K+ D +     KP+ I Y 
Sbjct: 458 DKAEELILEMLDR--GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L + +VS 
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
             + +    N ++ G   +    +A   +  + + G    LST + +   LCK N +DE 
Sbjct: 576 GVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEA 635

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + +++ L   D   +  ++N+M+  L   GR  EA  +       GL P+   Y  + E 
Sbjct: 636 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
              + LL    +L+  M  +GC+ +    N ++ +  + GEI  A      + EK  + +
Sbjct: 696 IIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLE 755

Query: 505 ATT---YTSLLEG 514
           A+T   +  LL G
Sbjct: 756 ASTASLFIDLLSG 768



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/499 (20%), Positives = 206/499 (41%), Gaps = 38/499 (7%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVL-- 107
           ++V   + P  +T++S+  G+   +S+QP      + +   ++S  +   +   +S++  
Sbjct: 256 TMVKNGVMPNCMTYNSILHGY--CSSEQPK---EAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 108 -----KQVKVNKITLDSSVYRFIIP------SLIQGKNTQKAF----SVFNEVKFNCEDI 152
                +  +  KI  DS   R + P      +L+QG  T+ A     ++ + +  N    
Sbjct: 311 LCKNGRSTEARKI-FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL--- 209
              + N L+   A    +D A+ +F +M   G+  + + +G  I   C++  +   +   
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 210 -SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             M+DE       +    ++   +IH  C   + ++A +++ E+  R    + I +  + 
Sbjct: 430 EQMIDE------GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                 G V E E +     ++GV P    Y   I G  +  ++ EA +L   + S    
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 329 IDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            D    N LI     VS +D   A+  F  M+  G  P + T + + + L    ++    
Sbjct: 544 PDCVTYNTLINGYCRVSRMD--DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+Y  ++ +    ++ +YN+++  LC +    EA  + Q +    L  +   +N ++ A 
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +      AK L+    ++G   N  TY ++       G +E   +LF +M + G   D+
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDS 721

Query: 506 TTYTSLLEGLCQETNLQAA 524
                ++  L Q   +  A
Sbjct: 722 GMLNFIVRELLQRGEITRA 740



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 9/259 (3%)

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           LN  +  V+   P +A+  +N M   G     PT+ T   L    C+  + D        
Sbjct: 53  LNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGN 112

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYG-VIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +    +  +  ++  ++  LC   R  +A   V++ M      PDV     L++  C E+
Sbjct: 113 VVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDEN 172

Query: 450 LLRPAKKLWDQMF---ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             + A +L   M      G + ++ +Y  +I+ F + G+ + A   +H ML++ ++PD  
Sbjct: 173 RSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY+S++  LC+   +  A EV    V + VM      ++ +   C       A   L+ +
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 567 SSDLGHSDSHVILLKSLAD 585
            SD    D  V+   SL D
Sbjct: 293 RSDGVEPD--VVTYNSLMD 309



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 12/238 (5%)

Query: 356 MIEKGRVPTLSTLSNLSKNLC-KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +++KG      T + L K LC  +  SD +  V + ++      D+ S  +++  LC   
Sbjct: 113 VVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDEN 172

Query: 415 RLREAYGVIQEM---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           R +EA  ++  M   +  G  PDV  Y +++    +E     A   + +M     S ++ 
Sbjct: 173 RSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ +I+   +   ++ A+ +   M++ GV P+  TY S+L G C     + A     K 
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
            +  V       ++ M  LC+ G    A K+      RGL  D+    ++  LL+  A
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIA---TYCTLLQGYA 347


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/542 (21%), Positives = 234/542 (43%), Gaps = 28/542 (5%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           R   D+A     A +S  NR   AR     +  T+H  G+       L+           
Sbjct: 55  RALADVARHSPAAAVSRYNRM--ARAGAGKVTPTVHTYGI-------LIGCCCRA----- 100

Query: 64  HSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSV 121
             L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       D   
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFS 160

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICN--SLLAVLASDGYIDNALK 175
              ++  L     +Q+A  + + +    +D G    P++ +  +++     +G  D A  
Sbjct: 161 CTILLKGLCDENRSQEALELLHMMA---DDRGGGSAPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
            + EM  R +    + +   I   C+   + + + +L  + K  N ++   +    I+HG
Sbjct: 218 TYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK--NGVMPNCMTYNSILHG 275

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +C  ++ +EA   L ++R    +PD + Y  + +     G   E   +     K G+ P 
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
              Y   + G   +  + E   L +++V      D  V N LI + +  +    A++ F+
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M + G  P + T   +   LCK    D+ +  ++ +       ++  Y  ++  LC   
Sbjct: 396 KMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A  +I EM  +G+  +  F+NS++ + C+E  +  ++KL+D M   G   N+ TY+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI  +   G+++ A +L  +M   G+ PD  TY +L+ G C+ + +  A  +F + V+ 
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 535 DV 536
            V
Sbjct: 576 GV 577



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 210/492 (42%), Gaps = 46/492 (9%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +  ++ KA+S ++E+      I P++   +S++A L     +D A++
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLD--RRISPDVVTYSSIIAALCKGQAMDKAME 252

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +   M   GV  + + +   +  +C + +  + +  L ++R   + +    V    ++  
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMR--SDGVEPDVVTYNSLMDY 310

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R  EA K+ D +  R  +PD   Y  + + +   G++ E   +L    + G+ P 
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD 370

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVF 352
            + +   I     + ++ EA  +   +       +     A+IG +    S+D   A+++
Sbjct: 371 HHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD--DAMLY 428

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLC---KRNKSDELV-----------------------E 386
           F  MI++G  P +   ++L  +LC   K +K++EL+                       +
Sbjct: 429 FEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK 488

Query: 387 VYKVLSANDYFTDME---------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             +V+ +   F  M          +Y+ ++   C +G++ EA  ++  M   G+ PD   
Sbjct: 489 EGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVT 548

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN+L+   CR   +  A  L+ +M +SG S N+ TYNI++           A  L+  + 
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           + G   + +TY  +L GLC+      A  +F      D+ L     +  + +L + G   
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 668

Query: 558 VATKLLRGLSSD 569
            A  L   LS++
Sbjct: 669 EAKDLFAALSAN 680



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 173/408 (42%), Gaps = 5/408 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+      G +D        +  +G     I F   +   C + +    + ++   R  E
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLR-RMTE 151

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL---RIRECKPDFIAYRIVAEEFKLMGS 276
            S +       +++ G C   R +EA ++L  +   R     PD ++Y  V   F   G 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +      +     ++P    Y   I  L   + + +A E+   +V      +    N+
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ G  SS  P+ AI F   M   G  P + T ++L   LCK  +S E  +++  ++   
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +Y  ++    T G L E + ++  M R G+ PD   +N L+ A  +++ +  A 
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++ +M   G + N+ TY  +I    + G ++ A+  F  M+++G+ P+   YTSL+  L
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           C       A E+  + ++  + L     ++ + S C+ G  + + KL 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 107/513 (20%), Positives = 210/513 (40%), Gaps = 59/513 (11%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH---------SP--LSYHSILKSLSLSRQINAIDSV 106
           P ++++ ++  GFF        ++          SP  ++Y SI+ +L   + ++    V
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L  +  N +  +   Y  I+      +  ++A       K   + + P++   NSL+  L
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLK--KMRSDGVEPDVVTYNSLMDYL 311

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G    A K+FD M+ RG+E     +   +  +     L ++ ++LD + +  N +  
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR--NGIHP 369

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
              +  ++I  + K ++V+EA  V  ++R     P+ + Y  V       GSV +  +  
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS- 343
           ++    G+ P    Y   I  L +  +  +A+EL   ++     ++    N++I S    
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489

Query: 344 ---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              I+       F+ M+  G  P + T S L    C   K DE  ++   + +     D 
Sbjct: 490 GRVIESEK---LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDC 546

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +YN +++  C   R+ +A  + +EM   G+ P++  YN +++          AK+L+  
Sbjct: 547 VTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVG 606

Query: 461 MFASG---------------CSGNL--------------------KTYNILISKFSEVGE 485
           +  SG               C  NL                    +T+NI+I    +VG 
Sbjct: 607 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 667 NDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 699



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 195/429 (45%), Gaps = 7/429 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  + ++L  +  N I  D  V+  +I +  + +   +A  VF+++
Sbjct: 338 TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKM 397

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + +   + P +    +++ +L   G +D+A+  F++M   G+  + I +   I   C   
Sbjct: 398 RQH--GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           K  +   ++ E+  R   +   ++    IIH  CK  RV E+ K+ D +     KP+ I 
Sbjct: 456 KWDKAEELILEMLDR--GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVIT 513

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L + +V
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMV 573

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           S   + +    N ++ G   +    +A   +  + + G    LST + +   LCK N +D
Sbjct: 574 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTD 633

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y+ + 
Sbjct: 634 EALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMA 693

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + EK  +
Sbjct: 694 ENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKHFS 753

Query: 503 PDATTYTSL 511
            +A+T + L
Sbjct: 754 LEASTASLL 762



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/499 (20%), Positives = 212/499 (42%), Gaps = 38/499 (7%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVL-- 107
           ++V   + P  +T++S+  G+   +S+QP      + +   ++S  +   +   +S++  
Sbjct: 256 TMVKNGVMPNCMTYNSILHGY--CSSEQPK---EAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 108 -----KQVKVNKITLDSSVYRFIIP------SLIQGKNTQKAF----SVFNEVKFNCEDI 152
                +  +  KI  DS   R + P      +L+QG  T+ A     ++ + +  N    
Sbjct: 311 LCKNGRSTEARKI-FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL--- 209
              + N L+   A    +D A+ +F +M   G+  + + +G  I   C++  +   +   
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 210 -SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             M+DE       +    ++   +IH  C   + ++A +++ E+  R    + I +  + 
Sbjct: 430 EQMIDE------GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                 G V E E +     ++GV P    Y   I G  +  ++ EA +L   + S    
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 329 IDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            D    N LI     VS +D   A+  F  M+  G  P + T + + + L    ++    
Sbjct: 544 PDCVTYNTLINGYCRVSRMD--DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+Y  ++ +    ++ +YN+++  LC +    EA  + Q +    L  +   +N ++ A 
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +      AK L+  + A+G   +++TY+++     E G +E    LF +M E G   ++
Sbjct: 662 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 721

Query: 506 TTYTSLLEGLCQETNLQAA 524
               S++  L Q  ++  A
Sbjct: 722 RMLNSIVRKLLQRGDITRA 740



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 9/259 (3%)

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGR---VPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           LN  +  V+   P +A+  +N M   G     PT+ T   L    C+  + D        
Sbjct: 53  LNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGN 112

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYG-VIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +    +  +  ++  ++  LC   R  +A   V++ M      PDV     L++  C E+
Sbjct: 113 VVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDEN 172

Query: 450 LLRPAKKLWDQMF---ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             + A +L   M      G + ++ +Y  +I+ F + G+ + A   +H ML++ ++PD  
Sbjct: 173 RSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY+S++  LC+   +  A EV    V + VM      ++ +   C       A   L+ +
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 567 SSDLGHSDSHVILLKSLAD 585
            SD    D  V+   SL D
Sbjct: 293 RSDGVEPD--VVTYNSLMD 309



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 14/239 (5%)

Query: 356 MIEKG-RVPTLSTLSNLSKNLC-KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           +++KG RV  + T + L K LC  +  SD +  V + ++      D+ S  +++  LC  
Sbjct: 113 VVKKGFRVEAI-TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDE 171

Query: 414 GRLREAYGVIQEM---KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
            R +EA  ++  M   +  G  PDV  Y +++    +E     A   + +M     S ++
Sbjct: 172 NRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDV 231

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ +I+   +   ++ A+ +   M++ GV P+  TY S+L G C     + A     K
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKK 291

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
             +  V       ++ M  LC+ G    A K+      RGL  D+    ++  LL+  A
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIA---TYCTLLQGYA 347


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 191/475 (40%), Gaps = 84/475 (17%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
            L FF+W S +  F+H   S+  +L+ L  +R +N   + L                F I
Sbjct: 84  GLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFL----------------FSI 126

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
                G                C  +     NSL+    + G    ++K+F  M   G+ 
Sbjct: 127 ERRSNG----------------CVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGIS 170

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            S + F   +    +  + G    + DE+R R   +   S     +I+GFCK   V+EAF
Sbjct: 171 PSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYGVTPDSYTFNTLINGFCKNSMVDEAF 229

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFIL 304
           ++  ++ +  C PD + Y  + +     G V     VL    K+   V P    Y   + 
Sbjct: 230 RIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVR 289

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G       C  +E+ E                            A++ F+ M+ +G  P 
Sbjct: 290 G------YCMKQEIDE----------------------------AVLVFHDMLSRGLKPN 315

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT----DMESYNVMVSFLCTSGRLREAY 420
             T + L K L + ++ DE+ ++  ++  ND FT    D  ++N+++   C +G L  A 
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDI--LIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAM 373

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-------ASGCSGNLKTY 473
            V QEM    L PD + Y+ L+   C  +    A+ L++++F          C      Y
Sbjct: 374 KVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAY 433

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N +       G+ + A ++F  ++++GV  D  +Y +L+ G C+E   + A+E+ 
Sbjct: 434 NPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYELL 487



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 46/253 (18%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P   T + L    CK +  DE   ++K +       D+ +YN ++  LC +G+++ A
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIA 263

Query: 420 YGVIQEMKRKGLD--PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           + V+  M +K  D  P+V  Y +L+   C +  +  A  ++  M + G   N  TYN LI
Sbjct: 264 HNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLI 323

Query: 478 SKFSEV-------------------------------------GEIEGALRLFHNMLEKG 500
              SE                                      G ++ A+++F  ML   
Sbjct: 324 KGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMK 383

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR-------SILSTFMISLCRR 553
           + PD+ +Y+ L+  LC       A  +FN+    +V+L +       +  +     LC  
Sbjct: 384 LHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCAN 443

Query: 554 GHFLVATKLLRGL 566
           G    A K+ R L
Sbjct: 444 GKTKQAEKVFRQL 456



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 100/541 (18%), Positives = 204/541 (37%), Gaps = 54/541 (9%)

Query: 34  LEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL------------ALGFFNWASQQPNFT 81
           L QT+ Q+G             I+P +LT +SL            A   F+   +    T
Sbjct: 160 LFQTMKQMG-------------ISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVT 206

Query: 82  HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141
               ++++++     +  ++    + K +++     D   Y  II  L +    + A +V
Sbjct: 207 PDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNV 266

Query: 142 FNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            + +     D+ P + +  +L+        ID A+ +F +M  RG++ + + +   I   
Sbjct: 267 LSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGL 326

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            E  +  ++  +L        +    +    ++I   C    ++ A KV  E+   +  P
Sbjct: 327 SEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHP 386

Query: 260 DFIAYRIVAE------EFK----LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           D  +Y ++        EF     L   +FE+EV+L K     +A   N   E+   L   
Sbjct: 387 DSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEY---LCAN 443

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            +  +A+++   ++             + G       + A      M+ +  VP L T  
Sbjct: 444 GKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYE 503

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK-- 427
            L   L K  ++    +  + +  + Y     +++ +++ L       E++ ++  M   
Sbjct: 504 LLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEK 563

Query: 428 --RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
             R+ +D        L  +  +E      + L+D       +G L     L+    E  +
Sbjct: 564 RIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYD-------NGYLVKMEELLGYLCENRK 616

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV---NHDVMLARSI 542
           +  A  L    LEK    D  T  +++EGLC+      AF ++N+ V   NH  +    +
Sbjct: 617 LLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVV 676

Query: 543 L 543
           L
Sbjct: 677 L 677



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 95/475 (20%), Positives = 184/475 (38%), Gaps = 101/475 (21%)

Query: 64  HSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAI-----DSVLKQVKVNKITL 117
           H++  G    A+   PN     +SY ++++   + ++I+       D + + +K N +T 
Sbjct: 264 HNVLSGMLKKATDVHPNV----VSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTY 319

Query: 118 D------SSVYRFI-IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDG 168
           +      S  +R+  I  ++ G N   AF+ F           P+ C  N L+      G
Sbjct: 320 NTLIKGLSEAHRYDEIKDILIGGN--DAFTTF----------APDACTFNILIKAHCDAG 367

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
           ++D A+K+F EM +  +   +  + V I   C   +  +  ++ +E+ ++E         
Sbjct: 368 HLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKE--------- 418

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
            VL+      GK               ECKP   AY  + E     G   + E V ++  
Sbjct: 419 -VLL------GKD--------------ECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLM 457

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPR 347
           K GV    + Y+  I G   E +   A EL  +++  +F  D +    LI  +  I +  
Sbjct: 458 KRGVQDPPS-YKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEAL 516

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE-------LVE-------------- 386
            A      M+    +P  +T  ++   L KR  ++E       ++E              
Sbjct: 517 LAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVV 576

Query: 387 --------------VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
                         + ++L  N Y   ME    ++ +LC + +L +A+ ++     K   
Sbjct: 577 RLLFSSAQKEKAFLIVRLLYDNGYLVKMEE---LLGYLCENRKLLDAHTLVLFCLEKSQM 633

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
            D+   N+++E  C+      A  L++++   G    L  + +L +     G+ E
Sbjct: 634 VDIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWE 688


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 130/579 (22%), Positives = 244/579 (42%), Gaps = 50/579 (8%)

Query: 46  SLSPSLVARVINPYLLTHHSLA--------LGF-FNWASQQPNFTHSP--LSYHSILKSL 94
           SLS  + +  I P + T H L         +GF F+  ++     H P   ++ ++++ +
Sbjct: 82  SLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGI 141

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIG 153
            +  +I     +  ++       D   Y  +I  L +  NT  A  +    V+ NC+   
Sbjct: 142 CVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ--- 198

Query: 154 PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P +   N+++  L  D  +  A  +F EM  +G+      +   I   C   +   V ++
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 212 LDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           L+E+    +S I   V++   ++   CK  +V EA  V+D++  R  +P+ + Y  + + 
Sbjct: 259 LNEM---VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
             L+  + E   V       G  P    Y   I G    +RI +A     ++      ++
Sbjct: 316 HCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLN 375

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
            D                A+  F+ M+ KG +P + + + L    CK  + D+ + ++  
Sbjct: 376 MD---------------EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 420

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +   +   D  +Y+ ++  LC   RL++A  +  EM      P++  Y  L++  C+   
Sbjct: 421 MCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRY 480

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A  L   +  S    +++  NI I      GE+E A  LF N+  KG+ PD  TY+ 
Sbjct: 481 LAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI 540

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RG 565
           ++ GLC+   L  A ++F +   +   L   I +T      R      A +LL     RG
Sbjct: 541 MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 600

Query: 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHI-----KWI 599
            S+D   + +  + +K L+D   ++ +++ I     KWI
Sbjct: 601 FSAD---ASTMTLFVKMLSD-DGLDQSLKQILRNGCKWI 635



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  FN M+     P+    + L  ++ K      L+ +   + +     ++ + +++++
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   R+  A+ V+ ++ + G  PD + + +L+   C E  +  A  L+D+M   G   
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRP 164

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY  LI+   +VG    A+RL  +M++K   P+   Y ++++ LC++  +  AF +F
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLF 224

Query: 529 N----KSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           +    K ++ D+    S++   + +LC   H  VAT L
Sbjct: 225 SEMVTKGISPDIFTYNSLIHA-LCNLCEWKH--VATLL 259



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%)

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A      M R    P    +N L+ +  +         L  QM + G   N+ T +ILI+
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F  +  +  A  +   +L+ G  PD  T+T+L+ G+C E  +  A  +F+K +      
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRP 164

Query: 539 ARSILSTFMISLCRRGHFLVATKLL 563
                 T +  LC+ G+   A +LL
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLL 189


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 195/454 (42%), Gaps = 39/454 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ ++  L    + +    + +++K N+  +D   Y  +I  L    N   A  V+ E
Sbjct: 256 VTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKE 315

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+LL      G I  + +++  M       + + + +FI    EN K
Sbjct: 316 MVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRK 374

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + +S+ + +R+R  S  + +   VLI HG CK   + +A K+L E +    K D  AY
Sbjct: 375 VEEAISVWELLRRR-GSGADSTTYGVLI-HGLCKNGHLNKALKILKEAKDGGDKLDAFAY 432

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +     G V E          LG+  + + Y             CE          
Sbjct: 433 SSIVDGLSKQGRVDE---------ALGIVHQMDKYG------------CE---------- 461

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               +   V N LI G V +     AI FF  M  KG  PT+ + + L   LCK  +  +
Sbjct: 462 ----LSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSD 517

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
                K +   D+  DM +Y++++  LC   ++  A  + +++  KGL+PDV+ +N LM 
Sbjct: 518 AYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMH 577

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C    +  A  L+  M  S C  NL T+N L+    +  E E A  ++  M + G  P
Sbjct: 578 GLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQP 637

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           D  +Y   L+GLC    +     +F+ ++ + ++
Sbjct: 638 DIISYNITLKGLCSCGRISDGIALFDDALKNGIL 671



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 138/600 (23%), Positives = 235/600 (39%), Gaps = 76/600 (12%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  F+ AS+QP +THSP  +  IL+ LS  + +  +  +++ +K  K      V   ++
Sbjct: 26  ALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTEDVVLTVL 85

Query: 127 PSLIQGKNTQKAFSVFNEVK--FNC---------------EDIGPEICNSLLAVLASDGY 169
            +  + K   +A   F +++  F C               E    E   S LA   + G 
Sbjct: 86  KAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGI 145

Query: 170 IDN-------------------ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           + N                   A  + D M  + ++     +G  I    ++  L   L 
Sbjct: 146 LPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALE 205

Query: 211 MLDEVRKRE--------NSMING--------------------------SVIAVLIIHGF 236
           + DE+ +R         N MI+G                           V   ++I+G 
Sbjct: 206 VFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGL 265

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  R +E+ ++ + ++  EC+ D   Y  +      +G+V     V K+  K  V    
Sbjct: 266 CKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDV 325

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV-LNALI-GSVSSIDPRSAIVFFN 354
             Y   + G     +I E+ EL   ++ GK    + V  N  I G   +     AI  + 
Sbjct: 326 VTYNALLNGFCRAGKIKESFELW--VMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWE 383

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            +  +G     +T   L   LCK    ++ +++ K         D  +Y+ +V  L   G
Sbjct: 384 LLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQG 443

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R+ EA G++ +M + G +      N L+    R   L  A   + +M   GCS  + +YN
Sbjct: 444 RVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYN 503

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI+   +      A      MLEK   PD  TY+ L++GLCQ   +  A  ++ + +  
Sbjct: 504 TLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVK 563

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
            +    ++ +  M  LC  G    A  L   +  S+ L +  +H  L+  L  ARE EMA
Sbjct: 564 GLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMA 623



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           W        H+ +SY+  ++ L  +R++    SV + ++      DS+ Y  +I  L + 
Sbjct: 348 WVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKN 407

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            +  KA  +  E K   + +     +S++  L+  G +D AL +  +M   G E S    
Sbjct: 408 GHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC 467

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDE 251
              I  F   +KL + +      R+ E    + +V++   +I+G CK +R  +A+  + E
Sbjct: 468 NPLINGFVRASKLEEAICFF---REMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKE 524

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  ++ KPD I Y ++ +                                   GL   ++
Sbjct: 525 MLEKDWKPDMITYSLLMD-----------------------------------GLCQGKK 549

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           I  A  L   ++      D  + N L+ G  S+     A++ ++ M +   +P L T + 
Sbjct: 550 IDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNT 609

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   L K  + +    ++  +  N +  D+ SYN+ +  LC+ GR+ +   +  +  + G
Sbjct: 610 LMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNG 669

Query: 431 LDP-DVSFY 438
           + P  +++Y
Sbjct: 670 ILPTSITWY 678


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 198/445 (44%), Gaps = 15/445 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     +  + + ++M   G+      + +FI  FC  ++L   L++L ++ K
Sbjct: 87  NKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMK 146

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E  ++  S +    ++G+C  KR+ +A  ++D++     KPD   +  +     L  
Sbjct: 147 LGYEPDIVTLSSL----LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL     I  A  L + +  GK   D  + N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I  +        A+  F  M  KG  P + T S+L   LC   +  +   +   +   
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +++ ++      G+L EA  +  EM ++ +DPD+  Y+SL+   C  D L  A
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K +++ M +  C  N+ TY+ LI  F +   +E  + LF  M ++G+  +  TYT+L+ G
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442

Query: 515 LCQETNLQAAFEVFNKSVN---HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
             Q  +   A  VF + V+   H  +L  +IL   +  LC+ G    A  +   L     
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNIL---LDGLCKNGKLAKAMVVFEYLQRSTM 499

Query: 572 HSD--SHVILLKSLADAREVEMAIE 594
             D  ++ I+++ +  A +VE   E
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWE 524



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 199/452 (44%), Gaps = 47/452 (10%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QP+     ++Y +++  L     I+   S+LK+++  KI  D  +Y  II  L + K+  
Sbjct: 220 QPDL----VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275

Query: 137 KAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A ++F E+  + + I P++   +SL++ L + G   +A ++  +M  R +  + + F  
Sbjct: 276 DALNLFTEM--DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELR 253
            I  F +  KL +   + DE+ KR    I+  +     +I+GFC   R++EA  + + + 
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRS---IDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            ++C P+ + Y  + + F     V E   + ++  + G+   T  Y   I G    R   
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR--- 447

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
                                          D  +A + F  M+  G  P + T + L  
Sbjct: 448 -------------------------------DCDNAQMVFKQMVSVGVHPNILTYNILLD 476

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  K  + + V++ L  +    D+ +YN+M+  +C +G++ + + +   +  KG+ P
Sbjct: 477 GLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSP 536

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V  YN+++   CR+     A  L  +M   G   N  TYN LI      G+ E +  L 
Sbjct: 537 NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELI 596

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             M   G A DA+T   L+  +  +  L  +F
Sbjct: 597 KEMRSCGFAGDAST-IGLVTNMLHDGRLDKSF 627



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 188/421 (44%), Gaps = 11/421 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A+ + D+M  RG +   + +G  +   C+   +   LS+L   +K E   I   V+    
Sbjct: 207 AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL---KKMEKGKIEADVVIYNT 263

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II G CK K +++A  +  E+  +  +PD   Y  +       G   +   +L    +  
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDP-RS 348
           + P    +   I   + E ++ EA++L + ++  K +ID D+   ++LI      D    
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSIDPDIFTYSSLINGFCMHDRLDE 381

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F  MI K   P + T S L K  CK  + +E +E+++ +S      +  +Y  ++ 
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
               +     A  V ++M   G+ P++  YN L++  C+   L  A  +++ +  S    
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TYNI+I    + G++E    LF N+  KGV+P+   Y +++ G C++ + + A  + 
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLL 561

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKS--LADA 586
            K      +      +T + +  R G    + +L++ + S     D+  I L +  L D 
Sbjct: 562 KKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 621

Query: 587 R 587
           R
Sbjct: 622 R 622



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M++    P++   + L   + K NK + ++ + + +       D+ +Y++ ++
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   +L  A  V+ +M + G +PD+   +SL+   C    +  A  L DQM   G   
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+  LI       +   A+ L   M+++G  PD  TY +++ GLC+  ++  A  + 
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            K     +     I +T +  LC+  H   A  L 
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF 281



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 23/248 (9%)

Query: 360 GRVPTLSTLSNLSKNLCKRNK------------SDELVEVYKVLSANDYFTDMES----- 402
           G  PT+ +  NL  + C                 + L ++ KV  A D F DM       
Sbjct: 22  GNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFP 81

Query: 403 ----YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
               +N ++S +    +      + ++M+  G+  D+  Y+  +   CR   L  A  + 
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M   G   ++ T + L++ +     I  A+ L   M+E G  PD  T+T+L+ GL   
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
                A  + ++ V            T +  LC+RG   +A  LL+ +    G  ++ V+
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEADVV 259

Query: 579 LLKSLADA 586
           +  ++ D 
Sbjct: 260 IYNTIIDG 267


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 192/477 (40%), Gaps = 41/477 (8%)

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            L+Q      A  + + +  + +D     CN L+  L +DG + +A ++ + +   G   
Sbjct: 70  GLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEAL---GPSA 126

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF----------- 236
           + I +   +  +C    +     M+D V    ++     +I  L + G            
Sbjct: 127 TIITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDM 186

Query: 237 -------------------CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
                              CK    ++A  +LDE+R + C+PD + Y ++       G V
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   VL      G  P    Y   +  L    R  EA +L   + S     D+   NA+
Sbjct: 247 GEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAV 306

Query: 338 IGSVS--SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA-- 393
           I S+       R+  V    M E G  P + T S++   LCK  + DE +++ K L A  
Sbjct: 307 ITSLCQKGFVGRATKVLAQ-MSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 394 --NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA-CCREDL 450
              +   D  ++N +++ LC  G    A  V+ EM   G  PD++ YN +++   C+   
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCK 425

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
              A  L + M ++G   +  TY  L    S   E+E A+ +F  +   G++PD   Y +
Sbjct: 426 TEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           +L GLC++     A + F   V++  M   S     +  +   G    A +LL  LS
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNLS 542



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 22/280 (7%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEK----GRVP-------------TLSTLSNLSKNLCKRN 379
           L+ S+S      A++  N +I+K    GRV              T+ T + +    C+  
Sbjct: 83  LVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIITYNTMVNGYCRAG 142

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             D      +++ +  +  D  +YN ++  LC  G + +A  V  +M  +G  P V  Y+
Sbjct: 143 NIDA---ARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYS 199

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++A C+E   + A  L D+M + GC  ++ TYN+LI+     G++  AL++ +++   
Sbjct: 200 ILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSY 259

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G  PDA TYT +L+ LC     + A ++  K  ++D        +  + SLC++G    A
Sbjct: 260 GCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRA 319

Query: 560 TKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
           TK+L  +S      D  ++  ++  L   R V+ AI+ +K
Sbjct: 320 TKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLK 359


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 123/567 (21%), Positives = 222/567 (39%), Gaps = 45/567 (7%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  F    ++Y++++  L+ +        VL  +           Y  ++ SL +    
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTL 311

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++A  +F  +  +       I  SL+   A  G +  A  +FDEM   G     I   V 
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C++    Q     +E+ +         V    II G  K  RV  AF+++  +   
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMR--GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF------------- 302
            C PD + Y  + + F  +G + E   +L +  K   +P    Y                
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENT 489

Query: 303 -----------------------ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
                                  I+GL    R+ EA  + + +VS     D    N LI 
Sbjct: 490 LDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN 549

Query: 339 GSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           G   S + R   A    + +   G +P   T + L   LCK  + D  V++ +  S+  +
Sbjct: 550 GLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGW 609

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ +Y  + + LC  G++  A  + QEM R+G  PD + Y  ++    +   L  A K
Sbjct: 610 NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACK 669

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGL 515
            +D+M   G    + TY  L+      G ++ A   F  ML +G +      Y +L+ G 
Sbjct: 670 FFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGF 729

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
           C+   + AA ++F   ++   +      ++    L R G    A +LL+ +++  G S  
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAA--GGSPP 787

Query: 576 HVILLKSLADA-REVEMAIEHIKWIQE 601
           H     ++ D  R+ + + + +K +QE
Sbjct: 788 HAATFTAILDGLRKSDESGKLLKLVQE 814



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 135/580 (23%), Positives = 239/580 (41%), Gaps = 48/580 (8%)

Query: 43  LRDSLSP-------SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLS 95
           +R+ L P       S VA V+    +T    A+ FF WA +Q  F H   +Y+ ++  L 
Sbjct: 73  IRNVLGPVHGQVLGSHVAAVLRSLKVT--GTAISFFRWAGEQAGFQHDVFTYNCLMNLLV 130

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGP 154
             +  +   ++ +++    I  ++  +  +I S  + +    A + F  +K   C+   P
Sbjct: 131 AEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCK---P 187

Query: 155 EICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
           ++   L+ V  L   G  + A ++F EM   G           + +    AK  +V    
Sbjct: 188 DLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK--RVKEAR 245

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           +   + E        IA   +I G  K    +EA KVLD +  + C P  + Y I+    
Sbjct: 246 EVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G++   E + +     G  P +  Y   I G     R+ EA  L + +V   +  D 
Sbjct: 306 CKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                +I G   S +   A   F  M+  G  P + T + + + L K  +      + K 
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKG 425

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR--- 447
           + A+  F D  +Y  ++   C  GRL EA  ++ E+ +    P++  Y+SL++  C    
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGS 485

Query: 448 -----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
                +DL   +K   + +    C         +I    + G ++ A R+F  M+ +G  
Sbjct: 486 VENTLDDLFEQSKAAAENLDPGLCCS-------IIVGLCKTGRLDEACRIFQRMVSEGCK 538

Query: 503 PDATTYTSLLEGLC--QETNLQAAFEVFNKSVNHDVMLARSI-----LSTFMISLCRRGH 555
           PDATTY  L+ GLC  +E  ++ AF +      HD+ +   +      +   I LC+ G 
Sbjct: 539 PDATTYNILINGLCRSRENRVERAFALL-----HDLEMVGYLPDAVTYTPLCIGLCKIGE 593

Query: 556 FLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
              A K+L   SS   ++D  ++  L   L    +V+ A+
Sbjct: 594 VDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAV 633



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +YN +++ L       + Y + +EM + G+ P+   +N L+ +  R      A   +
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQ 517
           + M    C  +L T+ IL+    + G  E A  +FH M+  G V PD   +T+++  L +
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDS 575
              ++ A EVF +             +T +  L + GH   A K+L  +   + +    +
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297

Query: 576 HVILLKSLADAREVEMAIEHIKWIQESS 603
           + IL+ SL  A  +E A E  + +  S 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASG 325


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 129/555 (23%), Positives = 230/555 (41%), Gaps = 56/555 (10%)

Query: 65  SLALGFFNWASQQPNFT--------HSPLSY--HSILKSLSLSRQINAIDSV---LKQVK 111
           SL L F +WA  Q  F+        H    Y  +   +SL+    +N +D     L Q  
Sbjct: 62  SLVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 112 VN---KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASD 167
            N   +    S+V+  ++ S  +     KA S+ N  K      G    N++L AV+ + 
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK 181

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  A  +F EM   GV  +   + + I  FC    L   L    E+ +  N  +   V
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMER--NGCLPNVV 239

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               II  +CK +++ EAFK+L  + ++   P+ I+Y +V       G + E   +L++ 
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DP 346
            K    P    +   I G        +A  L   +V    + +      LI S+    + 
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+ F + M ++G  P   T + L     ++    +  ++ K +  N +   + +YN +
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 407 VSFLCTSGRLREAYGVIQEMKR-----------------------------------KGL 431
           ++  C  GR+ +A G++QEM                                     KG+
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI 479

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV+ Y+SL++  C++  L     L+ +M + G   +  TY  LI+ +   G+++ ALR
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M++KG +PD  TY  L+ G  +++  + A  +  K + ++  +   I    +I  C
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL-YEESVPNEITYNTLIDNC 598

Query: 552 RRGHFLVATKLLRGL 566
               F  A  L++G 
Sbjct: 599 NNLEFKSALALMKGF 613



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/603 (21%), Positives = 242/603 (40%), Gaps = 103/603 (17%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ-INAIDSVLKQVKVNKITLDSSVYRFI 125
           AL   N A +   F    LSY++IL ++  ++Q +   + + K++  + ++ +   Y  +
Sbjct: 151 ALSIVNLA-KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNIL 209

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I       N +     F E++ N         N+++        I  A K+   M+ +G+
Sbjct: 210 IRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMINGS----------- 226
             + I + V I   C   ++ +   +L+E+ KR         N++ING            
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329

Query: 227 --------------VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                         V    +I+  CK   +  A + LD++R R   P+   Y  + + F 
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G + +   ++K+  + G  P    Y   I G  +  R+ +A  L + ++   F  D  
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             + +I G   + +   A      M+ KG  P ++T S+L + LCK+ +  E+ ++++ +
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN------------ 439
            +     D  +Y  +++  C  G L +A  +  EM +KG  PD+  YN            
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRT 569

Query: 440 --------------------------------------SLMEACCREDLLRPAKKLWDQM 461
                                                 +LM+  C + L+  A ++ + M
Sbjct: 570 KEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESM 629

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N + YN++I   S+VG IE A  L+  ML  G AP + T  +L + L  E   
Sbjct: 630 LQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHE--- 686

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
                   K V  + +L  ++ S      CR     +A K+L G++S  G+ D+   +LK
Sbjct: 687 -------GKEVELNQLLDYTLKS------CRITEAALA-KVLIGINSKEGNMDAVFNVLK 732

Query: 582 SLA 584
            +A
Sbjct: 733 DMA 735


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 34/335 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I+G C   +   A +  DE+     +P+   Y  + + F  +G       +LKK  K G
Sbjct: 160 LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG 219

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P    Y   I GL  +R + EA                D+ + + G            
Sbjct: 220 GRPDIVIYNTIIDGLCKDRLVSEAL---------------DIFSEIKG------------ 252

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
                  KG  P + T S L   LC  ++ +E   ++  + + +   D+ ++N++V  LC
Sbjct: 253 -------KGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC 305

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G L EA G+I+ M  KG++P+ + YNSLM   C ++ +  A+ ++D M   GC  N+ 
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVV 365

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           +YNILI+ + +   I+ A  LF  M  +G+ P+   Y +L+ GLCQ      A E+F   
Sbjct: 366 SYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDM 425

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
                       +  + SLC+ G+   A +L R +
Sbjct: 426 QAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 183/432 (42%), Gaps = 38/432 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + +  +L +L   +    + S+ K++++ +I  D   +  +I    + +    AFSV  +
Sbjct: 85  VEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGK 144

Query: 145 V-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + K   E       +SL+  L  +     A++ FDEM   G + +   +   I  FC+  
Sbjct: 145 IIKLGFEPDAVTF-SSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIG 203

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           K    + +L ++ K         VI   II G CK + V EA  +  E++ +  +PD   
Sbjct: 204 KTTVAVGLLKKMDKAGGR--PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFT 261

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y I+           E   +  +   L + P    +   +  L  E  + EA+ + ++  
Sbjct: 262 YSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKI-- 319

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                                           MIEKG  P  +T ++L    C +NK  E
Sbjct: 320 --------------------------------MIEKGVEPNYATYNSLMNGYCLQNKVFE 347

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              V+  +       ++ SYN++++  C + R+ EA  +  EM  +GL P+   YN+L+ 
Sbjct: 348 ARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLIS 407

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+      A++L+  M A GCS +L T  IL+    ++G ++ ALRLF  M +  + P
Sbjct: 408 GLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKP 467

Query: 504 DATTYTSLLEGL 515
           +  TY  L+  +
Sbjct: 468 NLVTYDILIRAM 479



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           LG++I  G F  D    ++LI  +   D  + A+ FF+ M+  G  P L T + + K  C
Sbjct: 142 LGKIIKLG-FEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFC 200

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K  K+   V + K +       D+  YN ++  LC    + EA  +  E+K KG+ PDV 
Sbjct: 201 KIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVF 260

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ LM   C  D    A  L+++M +     ++ T+NIL+ K  + G +  A  +   M
Sbjct: 261 TYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIM 320

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +EKGV P+  TY SL+ G C +  +  A  VF+  +    M      +  +   C+    
Sbjct: 321 IEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRI 380

Query: 557 LVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQES--SPTMLQE 609
             A +L      RGL   + ++ ++  L+  L  A     A E  K +Q    SP ++  
Sbjct: 381 DEARELFDEMSFRGL---IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVT- 436

Query: 610 ISAELFASLSSSSYPEPILLLLHALQEKCL 639
               L  SL    Y +  L L  A+Q+ CL
Sbjct: 437 -CTILLDSLCKLGYLDNALRLFRAMQDSCL 465



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN MI K  +P +     L   L +      ++ + K +       D+  +N++++
Sbjct: 68  ALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILIN 127

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                 R+  A+ V+ ++ + G +PD   ++SL+   C ED    A + +D+M ASG   
Sbjct: 128 CFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQP 187

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           NL TYN +I  F ++G+   A+ L   M + G  PD   Y ++++GLC++  +  A ++F
Sbjct: 188 NLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIF 247

Query: 529 N----KSVNHDVMLARSILSTFMISLC 551
           +    K V  DV       S  M  LC
Sbjct: 248 SEIKGKGVRPDVF----TYSILMHGLC 270



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           +NILI+ FS +  ++ A  +   +++ G  PDA T++SL+ GLC E     A E F++ V
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
                      +T +   C+ G   VA  LL+ +    G  D  +++  ++ D 
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPD--IVIYNTIIDG 233



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID A ++FDEMS RG+  +T  +   I   C+  +  +   +  +++ +  S     V  
Sbjct: 380 IDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCS--PDLVTC 437

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            +++   CK   ++ A ++   ++    KP+ + Y I+       G ++
Sbjct: 438 TILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIY 486


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 186/443 (41%), Gaps = 56/443 (12%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +D A ++ DEM  RGV+   +     I   C   ++ + L       K      + +V
Sbjct: 13  GQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF----KSMGEECSPNV 68

Query: 228 IAV-LIIHGFCKGKRVEEAFKVLDELRIR-----ECKPDFIAYRIVAEEFKLMGSVFERE 281
           I    +++G CK  R++E  ++ D++  R      C+PD I+Y  V +       V +  
Sbjct: 69  ITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAY 128

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-----GEVIVSGKFTIDDDVLNA 336
              K+ R +G AP    Y   I GL    R+ EA  L     GE +V           NA
Sbjct: 129 EYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM-----YYNA 183

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ G      P   +     M EKG    +   + +   L K ++ ++  + ++ L  + 
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-------E 448
              ++ +YNV V  LC +G++ EAY ++ EM    + PDV  Y+S+++  C+       +
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 449 DLL----------------------------RPAKKLWDQMFASGCSGNLKTYNILISKF 480
           D+                             R A ++ + M  +G    L+TYN+L+   
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
                +E AL ++H M  K   PDA TY  L++ LC+   +  A E  +     +V+   
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 541 SILSTFMISLCRRGHFLVATKLL 563
           +I    +  LC++G    A  +L
Sbjct: 424 AICHALVEVLCKQGEVDEACSVL 446



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 195/452 (43%), Gaps = 32/452 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++ +L  +++++      K+++      +   Y  +I  L +     +A+S+  +
Sbjct: 109 ISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQ 168

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKF 199
           +K   ED+ P     N+++      G     L++   M  +G   + I F   +   WK 
Sbjct: 169 LKG--EDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKN 226

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            E  K  Q    L +  K+ N      V   + +HG CK  +V+EA+++L E+   +  P
Sbjct: 227 DEQEKACQFFERLLKSGKKPNV-----VTYNVAVHGLCKAGKVDEAYRILLEMVESKVTP 281

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  + + F   G + + + V  +       P    +   + G    ++  EA  + 
Sbjct: 282 DVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVH 341

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E +V+  F       N L+  V   D   SA+  ++ M  K R P  +T + L + LC+ 
Sbjct: 342 EDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRA 401

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV---------------- 422
            + DE  E   V+ A++   +    + +V  LC  G + EA  V                
Sbjct: 402 RRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEA 461

Query: 423 ---IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
              I++M  KG+ PD + Y +++ + C  D +  A   +++M + GC+  L TY +LI +
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
                  + A R+F  M+  G  P A T  +L
Sbjct: 522 ACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 13/315 (4%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I+GFCK  +V++AF++LDE++ R  K D + +  + +     G + E    L++ + +G
Sbjct: 5   VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDE---ALEQFKSMG 61

Query: 292 --VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP--- 346
              +P    Y   + GL    RI E  EL + +   ++         +I   + ID    
Sbjct: 62  EECSPNVITYNTVVNGLCKANRIDEGLELFDDM-EKRYEASHGCEPDVISYSTVIDALCK 120

Query: 347 ----RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                 A  +F  M   G  P + T S+L   LCK ++ DE   +   L   D       
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMY 180

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN +V+     G+  E   ++  MK KG   ++  +N+++ A  + D    A + ++++ 
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 240

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            SG   N+ TYN+ +    + G+++ A R+   M+E  V PD  TY+S+++G C+   + 
Sbjct: 241 KSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMD 300

Query: 523 AAFEVFNKSVNHDVM 537
            A +VF + + H+ +
Sbjct: 301 KADDVFTRMMVHECI 315


>gi|125557435|gb|EAZ02971.1| hypothetical protein OsI_25111 [Oryza sativa Indica Group]
          Length = 728

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 123/515 (23%), Positives = 232/515 (45%), Gaps = 31/515 (6%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  ++W P +   L +L     ++P LVA V++        LAL FF WA +Q  F H  
Sbjct: 104 RRHQRWGPPVVAELTKL---RRVAPELVAEVLSARPPPPPPLALPFFLWAGRQKGFRHCF 160

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++H++   LS +    A D +   ++ +   +  S    ++      +   +A      
Sbjct: 161 PAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARRPLRALHALR- 219

Query: 145 VKFNCE-DIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +F  E  + PE+  CN +L  LA+ G++D+ LK+FDEMSH  V    + F + +     
Sbjct: 220 -RFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALAR 278

Query: 202 NAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
                ++L M+  +R    R +  +  +++  ++  G  +G       +V +E+R     
Sbjct: 279 AGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEG-----CIRVWEEMRRDHVD 333

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD +AY  +       G V + E +  + R+ G+      Y   I G +   R+ +   +
Sbjct: 334 PDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRV 393

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +V   +  D  + N LIG +  I+    A   F  ++++  +P+  T+S L   L +
Sbjct: 394 LKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSETVSPL---LAR 450

Query: 378 RNKSDELVEVYKVLSANDYFTDME--SYNVMVSFL----CTSGRLREAYGVIQEMKRKGL 431
                E+V+ + ++   D   ++      ++V FL    C SG   +A  V    +R+G 
Sbjct: 451 YADKGEMVKFFGLV---DKLVELSLPIVEILVDFLKLFACKSGNELKAVEVFNAFRRRG- 506

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGAL 490
              V  YN L+E   +    + A  L+++M +S  C  +  TY+ +I  F +   IE A 
Sbjct: 507 HYSVGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMIPCFVDEENIEEAC 566

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             ++ M++    P  + Y +L++GLC++  + AA 
Sbjct: 567 SCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAI 601



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + + + L +   +D+L+E+   + A     D+  Y  +V  +   G +     V
Sbjct: 264 PMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRV 323

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EM+R  +DPD   Y +++   C   ++  A++L+ +M   G   +   Y  LI  +  
Sbjct: 324 WEEMRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVS 383

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G +    R+   M++ G   D   Y +L+ GLC+      A ++F   V  D++ +   
Sbjct: 384 TGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSET 443

Query: 543 LSTFMISLCRRGHFL 557
           +S  +     +G  +
Sbjct: 444 VSPLLARYADKGEMV 458



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 110/242 (45%), Gaps = 3/242 (1%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P +   + L K + +    +  + V++ +  +    D  +Y  M++ LC +G + +A  +
Sbjct: 299 PDVFVYTALVKTMVRWGHMEGCIRVWEEMRRDHVDPDTMAYTTMIAGLCNAGMVEKAEEL 358

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             EM+RKGL  D   Y SL++       +    ++  +M  +G   +L  YN LI    E
Sbjct: 359 FGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCE 418

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +   + A ++F  ++++ + P + T + LL     +  +   F + +K V   + +   +
Sbjct: 419 IEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEIL 478

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQ 600
           +    +  C+ G+ L A ++        GH    +  IL+++L   +E + A+   + +Q
Sbjct: 479 VDFLKLFACKSGNELKAVEVFNAFRRR-GHYSVGIYNILIENLLKIKERKKALVLFEEMQ 537

Query: 601 ES 602
            S
Sbjct: 538 SS 539



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ + N ++  L  +G + +   +  EM    + P    +  ++ A  R  +     ++ 
Sbjct: 230 EVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMI 289

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M A  C  ++  Y  L+      G +EG +R++  M    V PD   YT+++ GLC  
Sbjct: 290 GRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEMRRDHVDPDTMAYTTMIAGLCNA 349

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLG 571
             ++ A E+F +     +++ R + ++ +      G      ++L+     G  +DLG
Sbjct: 350 GMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLG 407



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           DS  Y  +IP  +  +N ++A S +N +             +L+  L   G I+ A+ + 
Sbjct: 545 DSCTYSHMIPCFVDEENIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLV 604

Query: 178 DE----MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
            +    + +  +EF    + + I + C++    +V+ ++DE+ +   S+    +I   II
Sbjct: 605 KDCLGNVENGPMEFK---YTLTILEACQSKSPEKVIKVVDEMIELGYSI--EEIIYSAII 659

Query: 234 HGFCKGKRVEEAFKVLDELRIRE--CKPDFIAY 264
           +GFCK     EA KVL  +R R    + ++I Y
Sbjct: 660 YGFCKYASSTEARKVLSTMRDRNIISEANYIVY 692


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 199/478 (41%), Gaps = 40/478 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHR--GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           N+LL     +G +D A K+  EM  R  G   S + + V I       +L +   ++D +
Sbjct: 235 NTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM 294

Query: 216 R-------------------------------KRENSMINGSVIAV-LIIHGFCKGKRVE 243
           R                               + EN  I  +V+    IIHG  +   VE
Sbjct: 295 RMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVE 354

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            A     E+R     PD I Y  +   +   G++ E   +    ++ G+AP    Y   +
Sbjct: 355 AARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILL 414

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRV 362
            G      + EA+   + +V      D      L+     +   + +  FF+ M+ KG  
Sbjct: 415 DGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQ 474

Query: 363 P-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           P   +  + +S  L   + S E  ++ +V+ +    +D  +YN+ +  LC SG L++AY 
Sbjct: 475 PDCFAYNTRISAELILGSTS-EAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYV 533

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  +M   GL PD   Y  L+ A C    LR A+ ++D M  SG   +  TY + I  + 
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYC 593

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G +  A   F  MLE+GV P+  TY  L+  LC+      A++ F++ +   +   + 
Sbjct: 594 RRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKY 653

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
             +  +   C+ G++  A +L   +     H D  +H  L K   D  + + AI++++
Sbjct: 654 TYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQSKHAIQYME 710


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 209/492 (42%), Gaps = 43/492 (8%)

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEIC--NSLLAV 163
           LK++    +  D      ++  L + +   KA  +F E+    CE   P I   N++++ 
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCE---PTIVSYNTVISG 64

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           LAS   +D A K F+ M   G E   I F   I  FC+  +      +L++  KR    +
Sbjct: 65  LASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDV 124

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
               +   +IHG+CK   ++  FK+L+E+    C PD  AY ++ +    +G V E   +
Sbjct: 125 ---FLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-- 341
            ++ RK G       +   I  L    ++ EA EL   ++   +    +V ++LI ++  
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCK 241

Query: 342 -SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +D  + I  +  ++ K    +    ++L    CK  + D+ +++   +   D F D+
Sbjct: 242 AGKVDEANEI--YQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDI 299

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YN++V+    + RL +A  + + +   G  P+ + Y ++++       +  AK  +D+
Sbjct: 300 QTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE 359

Query: 461 MF-----------------------------ASGCSGNLKTYNILISKFSEVGEIEGALR 491
                                           +GCS N+  Y  +I    + G IE  L+
Sbjct: 360 ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLK 419

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
            F +M      P  TTYT +++GLC+   L  A +VF + V    +      +T +    
Sbjct: 420 NFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 479

Query: 552 RRGHFLVATKLL 563
           +      A KLL
Sbjct: 480 KASKMDEARKLL 491



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/470 (22%), Positives = 199/470 (42%), Gaps = 15/470 (3%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           S++ +L  + +++  + + + V   K+      Y  ++    +         +  ++   
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQM-VE 292

Query: 149 CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           C++  P+I   N L+A  +    +D+AL++F  +S  G + +   +   I    +  ++ 
Sbjct: 293 CDNF-PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRME 351

Query: 207 QVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           +  +  DE            VI+   +I G    KR++EA ++ ++L+   C P+ +AY 
Sbjct: 352 EAKAFFDEAL---------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYT 402

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            V +     G + +     +        P    Y   I GL   + + +A ++ E +V  
Sbjct: 403 AVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK 462

Query: 326 KFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               D      LI   S       A    + M+ KG  PT  T  ++    CK +  +E 
Sbjct: 463 GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA 522

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            EV   +        +  +  ++S+  + GR  EAY V+ EM  +G  PDV  Y SL++ 
Sbjct: 523 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 582

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
                 +  A+ ++D M   GC+ +  TY  +I  FS++G +E A  +   M + GV PD
Sbjct: 583 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD 642

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
              Y SL++G  +   +  AF V+++ V   +       +  M  L + G
Sbjct: 643 CFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 692



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 210/498 (42%), Gaps = 62/498 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++K L+ S++I+    + +++K    + +   Y  +I  L++    +     F  
Sbjct: 364 ISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF-- 421

Query: 145 VKFNCEDIGPEIC-------NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
                ED+    C         ++  L     + +A K+F++M  +G    TI +   I 
Sbjct: 422 -----EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLID 476

Query: 198 KFCENAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCK---------------- 238
            F + +K+ +   +LD +  +     ++  GS     I+HGFCK                
Sbjct: 477 GFSKASKMDEARKLLDVMLTKGPEPTAVTYGS-----IVHGFCKLDMINEAKEVIAQMRE 531

Query: 239 -------------------GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                                R EEA++VL E+  R C PD I Y  + +     G V E
Sbjct: 532 RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE 591

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              V     + G AP    Y   I        +  A E+ E++       D    N+L+ 
Sbjct: 592 ARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMD 651

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK-VLSANDYF 397
           G V       A   ++ M+  G  P   T + L   L K  K+D    ++K +L  ++  
Sbjct: 652 GYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP 711

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
             + SY +++  L  +GR+ EA+   QEM  +G+ P+   Y SL+ +  +   +  AKKL
Sbjct: 712 PTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 771

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL-- 515
            + M   G + +++ Y+ LI+   +   ++ A  +F  M+++G AP+  TY  L  G   
Sbjct: 772 VEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 831

Query: 516 -CQETNLQAAFEVFNKSV 532
             +  +L+A  + F++ V
Sbjct: 832 AGRALDLEAVKQHFSQGV 849



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           LK+    G+ P   +    + GL   R+I +A EL   + S          N +I  ++S
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLAS 67

Query: 344 IDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           ID    A  FFN MI+ G  P +   + L    CK  +  ++  +    +   +  D+  
Sbjct: 68  IDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP-QVGHMLLNQALKRFRPDVFL 126

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++   C +G L   + +++EM   G  PD + Y  L++  C+   +  A +L+++M 
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            SGC G+  T+  LI   S  G+++ A  L+  M+E+G  P      SL+  LC+   + 
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILL 580
            A E++   V   V  +R   ++ M   C+ G      KLL  +    +     ++ IL+
Sbjct: 247 EANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILV 306

Query: 581 KSLADAREVEMAIEHIKWI 599
              + A  ++ A+E  K +
Sbjct: 307 AGFSRANRLDDALELFKLL 325


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/527 (19%), Positives = 225/527 (42%), Gaps = 49/527 (9%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           ++ L++L  + Q++A   V  +++ ++ + L+   Y  +I +L +       F +  E+ 
Sbjct: 189 NAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELW 248

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                + P +   N L+  L   G ++ A ++   M   G+  S + FG+ I       +
Sbjct: 249 R--AGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGER 306

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            G+V  +L E+ +   S     VI   +I   C+     +A ++ DE+ +++ KP  + Y
Sbjct: 307 FGEVGIVLQEMEQLGVS--PNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTY 364

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE--------------- 309
            ++A+     G +   E +L+    +G+      +   +  L+                 
Sbjct: 365 NLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMV 424

Query: 310 ---------------RRICEAKELGEVI------VSGKFTIDDDVLNALI-GSVSSIDPR 347
                          R +C+  +  E +      ++    ++    NALI G       +
Sbjct: 425 TRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMK 484

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A      M+ KG      T + + +  CK +K +E ++++  ++   +  D+ ++N ++
Sbjct: 485 EATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLL 544

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G++ E + ++ +MK +GL PD+  Y ++++  C+   +R AK+   ++   G  
Sbjct: 545 HAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLK 604

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N+  YN LI  +   G+I GA+     M   G+ P   TY SL+  +C    ++ A  +
Sbjct: 605 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTI 664

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           F+++  ++V L     +  +   C+ G  + A         RG+S +
Sbjct: 665 FSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPN 711



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 190/435 (43%), Gaps = 46/435 (10%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           + CN+ L  L   G +D A ++FDEM   R V  +   +   I   C+  K+     ML 
Sbjct: 186 KTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLA 245

Query: 214 EVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
           E+ +   + +  +V+   +++   CK  RVEEAF++   +      P  + + I+     
Sbjct: 246 ELWR---AGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLA 302

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFI------------LGL-------------- 306
                 E  +VL++  +LGV+P    Y E I            L L              
Sbjct: 303 RGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAV 362

Query: 307 ---IVERRICEAKELG------EVIVSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNF 355
              ++ + +C+  E+       E ++S   T+   + N ++  +     R  S +   N 
Sbjct: 363 TYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNE 422

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ +G  P    ++   + LCK  K  E V ++          ++ + N ++  LC    
Sbjct: 423 MVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKY 482

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           ++EA  VIQ M  KG++ D   YN ++  CC++  +  A KL   M   G   +L T+N 
Sbjct: 483 MKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNT 542

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA----FEVFNKS 531
           L+  +  +G++E    L   M  +G+ PD  +Y ++++G C+  +++ A     E+ ++ 
Sbjct: 543 LLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRG 602

Query: 532 VNHDVMLARSILSTF 546
           +  +V +  +++  +
Sbjct: 603 LKPNVFIYNALIGGY 617



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 188/447 (42%), Gaps = 18/447 (4%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNTQKAFSV 141
           + ++Y+ I K+L    ++   + +L+ +    +T+   ++  ++  L+Q  +  +   S+
Sbjct: 360 TAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSI 419

Query: 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            NE+          +  + +  L   G    A+ ++ +  ++G+  +       I   CE
Sbjct: 420 TNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCE 479

Query: 202 NAKLGQVLSMLDEVRKRENSMIN-----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
                     + E  K   +M+N      S+   ++I G CK  ++EEA K+  ++  R 
Sbjct: 480 G-------KYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRG 532

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            KPD   +  +   +  +G + E   +L + +  G+ P    Y   I G    + I +AK
Sbjct: 533 FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAK 592

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           E    ++      +  + NALIG    + D   AI     M   G  PT  T  +L   +
Sbjct: 593 EYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWM 652

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C     +E   ++     N+    +  Y +M+   C  G++ EA    +EM+ +G+ P+ 
Sbjct: 653 CHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNK 712

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y +LM A  +      A KL+D+M  SG   +  TY  LI++ SEV  ++  +     
Sbjct: 713 LTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAE 772

Query: 496 MLEKGVAPDATTYTSLLEGL----CQE 518
           +    +  D   Y  L  G+    CQ+
Sbjct: 773 LSSGALTKDDRMYNILSNGINAPWCQK 799



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 105/541 (19%), Positives = 215/541 (39%), Gaps = 58/541 (10%)

Query: 73  W-ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131
           W A  QP      ++Y+ ++ +L  S ++     +  +++   +T     +  +I  L +
Sbjct: 248 WRAGLQPTV----VTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLAR 303

Query: 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           G+   +   V  E++         I N L+      G+   AL++FDEM  + ++ + + 
Sbjct: 304 GERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVT 363

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKV 248
           + +     C+  ++ +   +L+++     ++  G   +V+A L+     + +R+E    +
Sbjct: 364 YNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQ----RTRRLESVVSI 419

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            +E+  R  +P+         E    G   E   +  K    G+          I GL  
Sbjct: 420 TNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCE 479

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
            + + EA ++ + +++    +D    N +I G         AI     M  +G  P L T
Sbjct: 480 GKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFT 539

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            + L    C   K +E   +   +       D+ SY  ++   C +  +R+A   + E+ 
Sbjct: 540 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599

Query: 428 RKGLDPDVSFYN-----------------------------------SLMEACCREDLLR 452
            +GL P+V  YN                                   SLM   C   L+ 
Sbjct: 600 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVE 659

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            AK ++ Q   +     +  Y I+I  + ++G++  A+  F  M  +G++P+  TYT+L+
Sbjct: 660 EAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLM 719

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
               +  N + A ++F++ V   V +  +I    +I+ C           +  L  D+GH
Sbjct: 720 YAYSKSGNSEEASKLFDEMVGSGV-IPDNITYGTLIARCSE---------VNSLDKDIGH 769

Query: 573 S 573
           +
Sbjct: 770 T 770



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKT 472
           G L  A    + +  +G  P +   N+ +EA  R   L  A++++D+M  S   + N  +
Sbjct: 164 GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYS 223

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           Y  +I    + G+++    +   +   G+ P   TY  L++ LC+   ++ AF +
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRL 278


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 200/440 (45%), Gaps = 8/440 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++I+  L    +++    VL+++K   I+ D   Y  +I    +  + +K   +  E+K
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++  ++ P + +  SL   L      D +L +F ++   G ++    + + I  FC    
Sbjct: 388 YS--NMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGD 445

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L     +++E+  R N   + S    L+ HGFCK      A +  + +      P     
Sbjct: 446 LDSAHKLMEEM-VRNNLAPDPSNFESLV-HGFCKMGLWVNALEFFNMMLEGGILPSIATC 503

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ +     G V E   ++ + +  G+ P    Y   I  L  ER+   A EL  +++ 
Sbjct: 504 NVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLK 563

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                   V + LI G     + + A++ +  M++ G  P +   + L   LC R++  E
Sbjct: 564 RNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCE 623

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              ++K ++ N    D  SY  +++  C  G +R+A+ +  EM ++G  P V  Y SL++
Sbjct: 624 AYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVD 683

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C+ + +  A  L D+M   G + ++ TYN+LI+     G ++ AL + + M E GV P
Sbjct: 684 GYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLP 743

Query: 504 DATTYTSLLEGLCQETNLQA 523
           D  TY  +LE L +   L+ 
Sbjct: 744 DHMTYM-MLEWLLKAKKLKT 762



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/525 (23%), Positives = 225/525 (42%), Gaps = 66/525 (12%)

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           NA+D V  Q K   + L +    F++  L +    +   S+F E+K      GP   N  
Sbjct: 197 NAVD-VFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMK----STGPPP-NVF 250

Query: 161 LAVLASDGY---------ID--NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
              +  + Y         ID   A ++ +EM   G   + + +  +I+  C   ++G V 
Sbjct: 251 TYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLC---RVGYVE 307

Query: 210 SMLDEVRK--RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
           S LD VR     N ++N       IIHG CK   ++EA KVL+E++     PD   Y I+
Sbjct: 308 SALDFVRSLISANGLVNVYCYNA-IIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSIL 366

Query: 268 AEEFKLMGSVFEREVVL------------------------KKK---------RKLGVAP 294
              F   G V E+ + L                        KK+         R LG A 
Sbjct: 367 IHGFCKQGDV-EKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAG 425

Query: 295 RTND---YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAI 350
              D   Y   I G  ++  +  A +L E +V      D     +L+     +    +A+
Sbjct: 426 YKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNAL 485

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            FFN M+E G +P+++T + +    C+  + +E + +   +     F ++ +YN +++ L
Sbjct: 486 EFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRL 545

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   +   A  +   M ++ + P V  Y++L++   ++   + A  L+ +M   G + ++
Sbjct: 546 CKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDM 605

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y ILI+       +  A  LF  M E G+ PD  +YTS++ G C+  +++ A+ +FN+
Sbjct: 606 VAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNE 665

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            +    +      ++ +   C+     +A  L+     +G++ D+
Sbjct: 666 MLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDV 710



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 180/418 (43%), Gaps = 42/418 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR- 216
           N+++  L   G +D ALK+ +EM   G+      + + I  FC+   + + L +++E++ 
Sbjct: 329 NAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKY 388

Query: 217 -KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E S+++ S +     HG CK +  + +  +  +L     K D  AY I+ + F + G
Sbjct: 389 SNMEPSLVSYSSL----FHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQG 444

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     ++++  +  +AP  +++   + G         A E   +++ G         N
Sbjct: 445 DLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCN 504

Query: 336 ALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--- 391
            +I +         A+   N M  +G  P L T + +   LCK  KS+  +E++ ++   
Sbjct: 505 VIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKR 564

Query: 392 ----SANDYFT----------------------------DMESYNVMVSFLCTSGRLREA 419
               S   Y T                            DM +Y ++++ LC   R+ EA
Sbjct: 565 NVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEA 624

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           Y + ++M   G+ PD   Y S++   CR   +R A  L+++M   G    + TY  L+  
Sbjct: 625 YNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDG 684

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           + ++  I+ A  L   M  KG+ PD  TY  L+    +  NL  A E+ N+   + V+
Sbjct: 685 YCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVL 742



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 230/518 (44%), Gaps = 41/518 (7%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV--KVNKITLDSSVYRFIIPS 128
           F+   ++  F+ S  ++ +++  L+L+     + ++L+ +    NK+ LD+     + P 
Sbjct: 111 FSTTMKKYGFSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFE---LFPI 167

Query: 129 LIQG-KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           L++  K+  ++  VF+                L+ V A++  ++NA+ +F +    G+E 
Sbjct: 168 LLESPKDAARSVIVFD---------------LLIKVFAANSMLENAVDVFLQAKKTGLEL 212

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE---- 243
           ST     F+ K    A   + L  L E  K      N     +++ + +CKG   E    
Sbjct: 213 STRSCN-FLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMM-NFYCKGNFGEADID 270

Query: 244 --EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND--- 298
             +A ++L+E+      P  + Y         +G V   E  L   R L  A    +   
Sbjct: 271 TRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYV---ESALDFVRSLISANGLVNVYC 327

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMI 357
           Y   I GL  +  + EA ++ E + S   + D    + LI G     D    +     M 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
                P+L + S+L   LCK+  SD  +++++ L A  Y  D  +Y++++   C  G L 
Sbjct: 388 YSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLD 447

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            A+ +++EM R  L PD S + SL+   C+  L   A + ++ M   G   ++ T N++I
Sbjct: 448 SAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVII 507

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                 G +E AL L + M  +G+ P+  TY +++  LC+E   + A E+F   +  +V+
Sbjct: 508 DAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVL 567

Query: 538 LARSILSTFMISLCRRGH-----FLVATKLLRGLSSDL 570
            +  + ST +    ++ +      L A  L  G++ D+
Sbjct: 568 PSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDM 605


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 128/535 (23%), Positives = 223/535 (41%), Gaps = 38/535 (7%)

Query: 8   DLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVI--NPYLLTHHS 65
           DL   IS+AI  +  +        P L++ L       SL+P  V+++I  NP  L   S
Sbjct: 48  DLLCEISEAINDSETKHEKGYSENPRLKRIL------PSLTPRHVSKLITLNPLCLPPSS 101

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS----- 120
           L L FFN  + +P F H+  SY ++L  L L R +    S++  +   K T  +S     
Sbjct: 102 L-LSFFNHLASRPPFRHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSS 160

Query: 121 -----------------VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-- 161
                            V+  +I + +    T  A   F  V  N   +    C +LL  
Sbjct: 161 ILRTMPRHHHHHHSVGLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRR 220

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
            V      I+ +  ++ E+   G       F V +  FC+   +G    + DE+ KR   
Sbjct: 221 VVRLRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRG-- 278

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +  +V++   +I G CK   VEE F++   +      PD   +  +       G + E 
Sbjct: 279 -LRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEG 337

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
            ++  +    G+ P    +   I G     ++  A +  +++++     D    NALI  
Sbjct: 338 SLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALING 397

Query: 341 VSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           +  + D + A    N M   G  P   T + L    CK    +  +E+ + +       D
Sbjct: 398 LCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELD 457

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             ++  ++S LC  GR+ +A  ++ +M   G  PD   Y  +++  C++  ++   KL  
Sbjct: 458 DVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLK 517

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +M + G    + TYN L++   + G+++ A  L   ML  GVAP+  TY  LL+G
Sbjct: 518 EMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDG 572



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 135/264 (51%), Gaps = 2/264 (0%)

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G   + D  +A + F+ + ++G  PT+ + + L    CK    +E   +  V+ +     
Sbjct: 257 GFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCP 316

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +++ +++ LC  GRL E   +  EM  +GL P+   + +L++  C+   +  A K +
Sbjct: 317 DVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNF 376

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             M A G   +L TYN LI+   +VG+++ A RL + M   G+ PD  T+T+L++G C++
Sbjct: 377 QMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKD 436

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG-LSSDLGHSD-SH 576
            ++++A E+  + V   + L     +  +  LCR G    A ++L   LS+     D ++
Sbjct: 437 GDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTY 496

Query: 577 VILLKSLADAREVEMAIEHIKWIQ 600
            +++       +V+M  + +K +Q
Sbjct: 497 TMVIDCFCKKGDVKMGFKLLKEMQ 520



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 2/240 (0%)

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N LI G   S D          M  +G  P + T S L   LCK  + DE   ++  + 
Sbjct: 286 FNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMC 345

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +  ++  ++   C  G++  A    Q M  +G+ PD+  YN+L+   C+   L+
Sbjct: 346 GRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++L ++M ASG   +  T+  LI    + G++E AL +   M+E+G+  D   +T+L+
Sbjct: 406 EARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALI 465

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572
            GLC+E  +  A  +    ++          +  +   C++G   +  KLL+ + SD GH
Sbjct: 466 SGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSD-GH 524



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +NV++   C +G +  A  V  E+ ++GL P V  +N+L+  CC+   +    +L   M 
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVME 310

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + G   ++ T++ LI+   + G ++    LF  M  +G+ P+  T+T+L++G C+   + 
Sbjct: 311 SEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVD 370

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            A + F   +   V       +  +  LC+ G    A +L+  +++
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTA 416



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  ++ +  E+   G  P + F+N LM   C+   +  A+ ++D++   G    + ++N 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LIS   + G++E   RL   M  +GV PD  T+++L+ GLC+E  L     +F++     
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348

Query: 536 VMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDSHVILLKSLADAREVE 590
           ++      +T +   C+ G   +A K     L +G+  DL   ++ +  L  + D +E  
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 591 MAIEHI 596
             +  +
Sbjct: 409 RLVNEM 414


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 209/450 (46%), Gaps = 10/450 (2%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
           F++ SL++     K+F VF+ +      I      + +      G ID A+ +F +M   
Sbjct: 211 FLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEG 270

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           GV  + + +   I   C++ +L + L  + + R  EN +    V   ++++G  K ++ +
Sbjct: 271 GVLPNVVTYNNLIDGLCKSGRLEEAL--MFKGRMVENKVNPSLVTYGILVNGLVKFEKFD 328

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA  VL E+  +   P+   +  + + +   G++ +   V       G+ P    +   +
Sbjct: 329 EANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLL 388

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDD----VLNALIGSVSSIDPRSAIVFFNFMIEK 359
            G     ++ +A+++ E ++S   ++++D    VL+ L  S S  D  SA+     ++ +
Sbjct: 389 QGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKS-SKFD--SALKIVKALLLR 445

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEV-YKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
                 S L+ L   LCK  K  E +++ +++        +  + N ++  LC  G + E
Sbjct: 446 NIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEE 505

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
            + V +EM  +GL  D   YN+L+  CC+   +  A KL ++M   G   +  TYN L+ 
Sbjct: 506 VFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMK 565

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
             ++ G+++   R+ H   + GV P+  TY  +LEG C    +  A  +FNK V + V L
Sbjct: 566 GLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVEL 625

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +  + +  + +  + G+F  A KL   + S
Sbjct: 626 SYVVYNILIAAHSKAGNFTEAFKLRDAMRS 655



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/454 (19%), Positives = 195/454 (42%), Gaps = 47/454 (10%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++++++L+    + Q+   + VL+ +  N ++++     +++  L +     
Sbjct: 378 KPN----AVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFD 433

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS-HRGVEFSTIGFGVF 195
            A  +   +      +   +   L+  L   G    A+ ++  ++  +G+  +T      
Sbjct: 434 SALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNAL 493

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           ++  CE   + +V  +  E+ +R   ++   +    +I G CK  ++EEAFK+ +++  +
Sbjct: 494 LYGLCERGNMEEVFPVCKEMVER--GLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQ 551

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             KPD   Y  + +     G + +   VL + +  GV P    Y   + G     RI  A
Sbjct: 552 GFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNA 611

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
             L   +V  K  +   V N LI + S                                 
Sbjct: 612 VSLFNKLVYNKVELSYVVYNILIAAHS--------------------------------- 638

Query: 376 CKRNKSDELVEVYKV---LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
               K+    E +K+   + +++    + +Y+ ++  +C +  + EA G+ +EM+ +GL 
Sbjct: 639 ----KAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLM 694

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y +L+   C+   +   + +  +M ++    N  TY I+I  + ++G  + A +L
Sbjct: 695 PNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKL 754

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
            + M+  G++PD  TYT L +G C+E  L+   +
Sbjct: 755 LNEMIANGISPDTVTYTVLQKGYCKENELEETLQ 788



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 181/433 (41%), Gaps = 40/433 (9%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
           D  LK +K N +T ++     ++    +    ++A  V   +  N   +  + C+ +L +
Sbjct: 371 DMTLKGLKPNAVTHNT-----LLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHL 425

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L      D+ALK+   +  R ++ +     + +   C+  K  + + +   +  ++    
Sbjct: 426 LCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAA 485

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
           N +    L+ +G C+   +EE F V  E+  R    D I+Y  +       G + E   +
Sbjct: 486 NTTTSNALL-YGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKL 544

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
            +K  K G  P T  Y   + GL  + ++    ++G V+   K                 
Sbjct: 545 KEKMMKQGFKPDTYTYNFLMKGLADKGKM---DDVGRVLHEAK----------------- 584

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                         + G VP + T + + +  C  ++ D  V ++  L  N        Y
Sbjct: 585 --------------DHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVY 630

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N++++    +G   EA+ +   M+   + P +  Y+S++   C  DL+  AK ++++M  
Sbjct: 631 NILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRN 690

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N+  Y  LI  + ++G+++    +   M    + P+  TYT +++G C+  N + 
Sbjct: 691 EGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKE 750

Query: 524 AFEVFNKSVNHDV 536
           A ++ N+ + + +
Sbjct: 751 ATKLLNEMIANGI 763



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 117/549 (21%), Positives = 231/549 (42%), Gaps = 23/549 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  L  S ++        ++  NK+      Y  ++  L++ +   +A SV  E
Sbjct: 277 VTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVE 336

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          + N+L+   +  G +D+AL++ D+M+ +G++ + +     +  FC   +
Sbjct: 337 MYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQ 396

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIA 263
           + Q   +L+ +     S+   +   VL  H  CK  + + A K++  L +R  K  D + 
Sbjct: 397 MEQAEQVLEYLLSNVLSVNEDACSYVL--HLLCKSSKFDSALKIVKALLLRNIKVNDSLL 454

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             +V    K    +   ++  +   K G+A  T      + GL     + E   + + +V
Sbjct: 455 TLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMV 514

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                +D    N LI G   S     A      M+++G  P   T + L K L  + K D
Sbjct: 515 ERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMD 574

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           ++  V      +    ++ +Y +M+   C + R+  A  +  ++    ++     YN L+
Sbjct: 575 DVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILI 634

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  +      A KL D M +S     + TY+ +I        +E A  +F  M  +G+ 
Sbjct: 635 AAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLM 694

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATK 561
           P+   YT+L+ G C+   +    E   + +  + +    I  T MI   C+ G+   ATK
Sbjct: 695 PNVFCYTALIGGYCKLGQMD-QIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATK 753

Query: 562 LL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616
           LL      G+S D   + ++ +L K      E+E      + +Q  +   L+EI+   + 
Sbjct: 754 LLNEMIANGISPD---TVTYTVLQKGYCKENELE------ETLQGDTAVPLEEIT---YT 801

Query: 617 SLSSSSYPE 625
           +L    +P 
Sbjct: 802 TLVDKLHPH 810



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 1/233 (0%)

Query: 335 NALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N L+ S V S +   +   F+ M   G +  + T +      CK  K DE V ++  +  
Sbjct: 210 NFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGE 269

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +YN ++  LC SGRL EA      M    ++P +  Y  L+    + +    
Sbjct: 270 GGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDE 329

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  +  +M++ G S N   +N LI  +S  G ++ ALR+  +M  KG+ P+A T+ +LL+
Sbjct: 330 ANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQ 389

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           G C+   ++ A +V    +++ + +     S  +  LC+   F  A K+++ L
Sbjct: 390 GFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKAL 442



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 8/254 (3%)

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           + + + ++   F  ++S N ++S L  S  L +++ V   M R G+  DV  Y + + A 
Sbjct: 192 DTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAY 251

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+   +  A  L+ +M   G   N+ TYN LI    + G +E AL     M+E  V P  
Sbjct: 252 CKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSL 311

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL--- 562
            TY  L+ GL +      A  V  +  +        + +  +    R+G+   A ++   
Sbjct: 312 VTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDD 371

Query: 563 --LRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620
             L+GL  +   + +H  LL+      ++E A + ++++  +  ++ ++  + +   L  
Sbjct: 372 MTLKGLKPN---AVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCK 428

Query: 621 SSYPEPILLLLHAL 634
           SS  +  L ++ AL
Sbjct: 429 SSKFDSALKIVKAL 442



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 404 NVMVSFLCTSGR---LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++++  LC+  +      A+        KG+ P +   N LM +  + + L  + +++D 
Sbjct: 172 DLLIYILCSQFQHLGFHWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDA 231

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   ++ TY   I+ + + G+I+ A+ LF  M E GV P+  TY +L++GLC+   
Sbjct: 232 MCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGR 291

Query: 521 LQAAFEVFNKSVNHDV 536
           L+ A     + V + V
Sbjct: 292 LEEALMFKGRMVENKV 307


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 178/423 (42%), Gaps = 41/423 (9%)

Query: 135 TQKAFSVFNEVKFNCED-IGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           ++ A S FN +   C D + P +C    L+      G++++    F  +   G     I 
Sbjct: 68  SELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIA 127

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
               +   C   ++G+ + +L + R  E   +  +V   +++ G C  KR EEA ++L  
Sbjct: 128 INQLLKGLCHGKRVGEAMDVLLQ-RMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHM 186

Query: 252 L---RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           +     R C P+ ++Y IV   F   G V +   +  +    G+ P    Y   I GL  
Sbjct: 187 MADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGL-- 244

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
               C+A+                    L      +        F  MI+ G  P   T 
Sbjct: 245 ----CKAQ--------------------LFDRAEGV--------FQQMIDNGFKPNNYTY 272

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L        K  E+V++ + +SA     D  +Y  ++++LC +GR REA      M R
Sbjct: 273 NCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIR 332

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG+ P VS Y  L+     +  L       D M  +G S +   +NI  S +++ G I+ 
Sbjct: 333 KGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDK 392

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+ +F+ M + G++P+   Y +L++ LC+   +  A   FN+ +N  V     + ++ + 
Sbjct: 393 AMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVY 452

Query: 549 SLC 551
            LC
Sbjct: 453 GLC 455



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/533 (22%), Positives = 213/533 (39%), Gaps = 60/533 (11%)

Query: 85  LSYHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++ + +LK L   +++  A+D +L+++       D+  Y  ++  L   K  ++A  + +
Sbjct: 126 IAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLH 185

Query: 144 EVKFNCEDIG----PEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            +    +D G    P + +  + +    ++G +D    +F EM  RG+    + +   I 
Sbjct: 186 MMA---DDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVID 242

Query: 198 KFCENAKL-----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
             C+ A+L     G    M+D   K  N   N       +IHG+    + +E  ++L+E+
Sbjct: 243 GLCK-AQLFDRAEGVFQQMIDNGFKPNNYTYN------CLIHGYLSIGKWKEVVQMLEEM 295

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R  KPD   Y  +       G   E         + G+ P+ + Y   I G   +  +
Sbjct: 296 SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGAL 355

Query: 313 CEAKELGEVIVSGKFTIDDDVLN-----------------------------------AL 337
            E     +++V    + D  + N                                   AL
Sbjct: 356 SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 415

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE-VYKVLSAND 395
           I ++  +     A V FN MI +G  P +   ++L   LC  +K +   E VY++L    
Sbjct: 416 IDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG- 474

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +   +N ++  LC  GR+ E   +I  M+  G+ PD   Y  L+   C       A+
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           K++D M + G S    TYN L+  +     I+ A  LF  ML KGV P   TY ++L GL
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            Q      A E++   +N          +  +  LC+      A K+ + L S
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 647



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 192/433 (44%), Gaps = 23/433 (5%)

Query: 114 KITLDSSVYRFIIPS------LIQGKNTQKAFSVFNE-VKFNCED-IGPE--ICNSLLAV 163
           +   DS + + I P       LI G  T+ A S  +  +    E+ + P+  I N   + 
Sbjct: 324 RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSA 383

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
            A  G ID A+ +F++M   G+  + + +G  I   C   KLG+V    D+   + N MI
Sbjct: 384 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALC---KLGRV----DDAEVKFNQMI 436

Query: 224 NGSVIAVLII-----HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           N  V   +++     +G C   + E A +++ E+  +   P+ + +  +      +G V 
Sbjct: 437 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 496

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E   ++     +GV P    Y   I G  +  R  EA+++ + +VS   +  +   N L+
Sbjct: 497 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 556

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G  S+     A   F  M+ KG  P + T + +   L +  +  E  E+Y  +  +   
Sbjct: 557 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 616

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ +YN++++ LC S  + EA+ + Q +  KGL  ++  +  ++ A  +      A  L
Sbjct: 617 CDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDL 676

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +  + A+G   N+ TY ++     E G +E    LF  M + G AP++    +L+  L  
Sbjct: 677 FAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLH 736

Query: 518 ETNLQAAFEVFNK 530
             ++  A    +K
Sbjct: 737 RGDISRAGAYLSK 749



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/514 (19%), Positives = 209/514 (40%), Gaps = 54/514 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L  ++  +  + V +Q+  N    ++  Y  +I   +     ++   +  E
Sbjct: 235 VTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEE 294

Query: 145 -----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
                +K +C   G     SLL  L  +G    A   FD M  +G++     +G+ I  +
Sbjct: 295 MSARGLKPDCYTYG-----SLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGY 349

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                L ++ S LD +   EN +     I  +    + K   +++A  + +++R     P
Sbjct: 350 ATKGALSEMHSFLDLMV--ENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 407

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + Y  + +    +G V + EV   +    GV P    +   + GL    +   A+EL 
Sbjct: 408 NVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELV 467

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSI----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
             ++      +    N LI ++ ++    + R  I   + M   G  P   + + L    
Sbjct: 468 YEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI---DLMEHVGVRPDAFSYTPLISGY 524

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   ++DE  +V+  + +        +YN ++   C++ R+ +AY + +EM RKG+ P V
Sbjct: 525 CLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGV 584

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+++    +      AK+L+  M  SG   ++ TYNI+++   +   ++ A ++F +
Sbjct: 585 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 644

Query: 496 MLEKGV-----------------------------------APDATTYTSLLEGLCQETN 520
           +  KG+                                    P+  TY  + E L +E +
Sbjct: 645 LCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGS 704

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           L+    +F+    +       +L+  +  L  RG
Sbjct: 705 LEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 738



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/446 (17%), Positives = 166/446 (37%), Gaps = 73/446 (16%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  ++   +    ++ + S L  +  N ++ D  ++     +  +     KA  +FN++
Sbjct: 341 TYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKM 400

Query: 146 KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + +   + P + N  +L+  L   G +D+A   F++M + GV  + + F   ++  C   
Sbjct: 401 RQH--GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458

Query: 204 KLGQVLSMLDEVRKR---ENSMINGSVIAVL----------------------------- 231
           K  +   ++ E+  +    N++   ++I  L                             
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 518

Query: 232 -IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I G+C   R +EA KV D +      P  + Y  +   +     + +   + ++  + 
Sbjct: 519 PLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 578

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNAL--------- 337
           GV P    Y   + GL   +R  EAKEL   +++     D    + +LN L         
Sbjct: 579 GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 638

Query: 338 ---IGSVSSIDPRSAIVFFNFMI--------------------EKGRVPTLSTLSNLSKN 374
                S+ S   +  I+ F  MI                      G VP + T   +++N
Sbjct: 639 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAEN 698

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L +    +E   ++  +  N    + +  N +V  L   G +  A   + ++  +    +
Sbjct: 699 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 758

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQ 460
            S  + LM     ++    AK L ++
Sbjct: 759 ASTTSLLMSIFTSDEYQHHAKSLPEK 784



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---GEIEGALRLFHNMLEK---GVAPD 504
           L  A KL+D++       +++ +N L++  S        E A+  F+ M+ +    VAP+
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPN 89

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             TY+ L+   C+  +L+  F  F   +     +    ++  +  LC       A  +L 
Sbjct: 90  LCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLL 149

Query: 565 GLSSDLG---HSDSHVILLKSLADAREVEMAIE 594
               +LG    + S+ ILLK L + +  E A+E
Sbjct: 150 QRMPELGCMPDTVSYTILLKGLCNEKRAEEALE 182


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 212/510 (41%), Gaps = 81/510 (15%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           +DS LK+ + ++ ++           L++   TQ    + N+V +N           +++
Sbjct: 250 LDSFLKEGRKDEASM-----------LLKEMETQGGGCLLNDVTYNV----------VIS 288

Query: 163 VLASDGYIDNALKMFDEM--SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            LA +G+++NA K+ D M  S +   F+   +   I    E   + +V ++  E+   EN
Sbjct: 289 FLAREGHLENAAKLVDSMRLSKKASSFT---YNPLITALLERGFVQKVEALQMEM---EN 342

Query: 221 SMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             I  +++    IIHG  K ++VE A     E+R     PD I Y  +   +   G++ E
Sbjct: 343 EGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKE 402

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
              +L   R+ G+AP    Y   I G      + EA+ L E +V      D      L+ 
Sbjct: 403 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR---NKSDELVEVYKVLSAND 395
           GS    +   A  FF+ M+ KG  P     +     +C       + +  ++ +V+    
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPDCFAYNT---RICAELILGDTHKAFQLREVMMLKG 519

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            + D  +YNV++  LC +G L++A  +  +M   GL PD   Y  L+ A C   LL  A+
Sbjct: 520 IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEAR 579

Query: 456 KLWDQMFASGCS----------------GNLK-------------------TYNILISKF 480
           KL + M + G                  GNL                    TYN+LI   
Sbjct: 580 KLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 639

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA----FEVFNKSVNHDV 536
              G    A   FH MLE+G+AP+  TYT L++G C+E N   A    FE+    +  D 
Sbjct: 640 CRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDY 699

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGL 566
               ++   F      +GH   A + L  +
Sbjct: 700 CTHNALFKGF-----DKGHMYHAIEYLENI 724



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 175/425 (41%), Gaps = 41/425 (9%)

Query: 149 CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           C  + P++  CN +L VL      D+   ++ EM    +E + + +   +  F +  +  
Sbjct: 201 CHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKD 260

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L E+  +    +   V   ++I    +   +E A K++D +R+ + K     Y  
Sbjct: 261 EASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK-KASSFTYNP 319

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G V + E +  +    G+ P    Y                           
Sbjct: 320 LITALLERGFVQKVEALQMEMENEGIMPTLVTY--------------------------- 352

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   NA+I G + S    +A + F  M   G +P L T +++    CK     E +
Sbjct: 353 --------NAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEAL 404

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +   L        + +YN ++   C  G L EA  + +EM  +G  PDV  Y  LM   
Sbjct: 405 WLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGS 464

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +   L  A++ +D+M + G   +   YN  I     +G+   A +L   M+ KG+ PD 
Sbjct: 465 HKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDT 524

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLR 564
            TY  +++GLC+  NL+ A ++  K V+ D +    I  T +I + C RG    A KLL 
Sbjct: 525 VTYNVIIDGLCKTGNLKDAKDLKMKMVS-DGLQPDCITYTCLIHAHCERGLLSEARKLLN 583

Query: 565 GLSSD 569
           G+ SD
Sbjct: 584 GMVSD 588



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 48/310 (15%)

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           KF+ +    +A   + S++     +  F  +   G  P +   + + + L    + D++ 
Sbjct: 173 KFSAESQARDATPAACSTL----CLAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVR 228

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG---LDPDVSFYNSLM 442
            VY+ +   +    + +YN ++      GR  EA  +++EM+ +G   L  DV+ YN ++
Sbjct: 229 AVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVT-YNVVI 287

Query: 443 EACCREDLLRPAKKLWDQMFAS----------------------------------GCSG 468
               RE  L  A KL D M  S                                  G   
Sbjct: 288 SFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMP 347

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            L TYN +I    +  ++E A   F  M   G+ PD  TY S+L G C+  NL+ A  + 
Sbjct: 348 TLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLL 407

Query: 529 NKSVNHDVMLARSILS--TFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
                    LA ++L+  T +   CR G    A +L   +       D  ++ IL+    
Sbjct: 408 GDL--RRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSH 465

Query: 585 DAREVEMAIE 594
             R + MA E
Sbjct: 466 KVRNLPMARE 475


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 132/565 (23%), Positives = 239/565 (42%), Gaps = 59/565 (10%)

Query: 15  QAIISASNR-TRPARKWTPLLEQTLHQLG----LRDSLSPSLVARVINP----YLLTHHS 65
           QA+++A  R  +PARK   L+ +   + G     R +   S+ AR I P    Y    H+
Sbjct: 260 QAVVTAFERIKKPARKEYGLMVKYYARRGDMHHARQTFE-SMQARGIEPSSHVYSSLIHA 318

Query: 66  LALGFFNWAS-------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
            A+G     +       ++     + ++Y  I+   +   + +A D   K+ K    +L+
Sbjct: 319 YAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLN 378

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
           +  Y  II +  Q  N  +A ++  E++    D   +I ++++      G  +  L +FD
Sbjct: 379 AVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFD 438

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFC 237
            +   G   S I +G  I  +    K+G+V   L   +  + S I  ++    ++I+GF 
Sbjct: 439 RLKECGFSPSVISYGCLINLY---TKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFL 495

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK---------- 287
           K K    AF V ++      KPD + Y  +   F  M S  +R + + K+          
Sbjct: 496 KLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGM-SNMDRAICMVKQMQKERYRPTT 554

Query: 288 --------------------------RKLGVAPRTNDYREFILGLIVERRICEAKE-LGE 320
                                     R+ G  P  + Y   ILGL+ +R++ +A   L +
Sbjct: 555 RTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQ 614

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + V+G    +      + G  S  D   A  +F+ +  +G    + T   L K+ CK  +
Sbjct: 615 MNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGR 674

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
               + V K +SA +   +   YN+++      G + EA  ++Q+M+++G+ PD+  Y S
Sbjct: 675 MQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTS 734

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
            + ACC+   ++ A ++  +M A G   NLKTY  LI+ ++     E AL  F  M    
Sbjct: 735 FVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAE 794

Query: 501 VAPDATTYTSLLEGLCQETNLQAAF 525
           + PD   Y  L+  L        ++
Sbjct: 795 LKPDKAAYHCLMTSLLSRATFAQSY 819



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/479 (18%), Positives = 197/479 (41%), Gaps = 5/479 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++    +  +   A   F  ++    +    + +SL+   A    ++ AL    +M 
Sbjct: 277 YGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMK 336

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
             G+E + + + + +  F +  K         E +++  S+   +V    II+  C+   
Sbjct: 337 EEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSL--NAVTYGSIIYAHCQTCN 394

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           ++ A  ++ E+ ++        Y  + + + ++G+  +  +V  + ++ G +P    Y  
Sbjct: 395 MDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGC 454

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            I       ++ +A ++ +++       +    + LI G +   D  +A   F    + G
Sbjct: 455 LINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDG 514

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P +   +N+    C  +  D  + + K +    Y     ++  ++     +G +R A 
Sbjct: 515 LKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRAL 574

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +   M+R G  P V  YN+L+     +  +  A  + DQM  +G   N  TY  L+  +
Sbjct: 575 EIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGY 634

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           + +G+ E A + F  +  +G+  D  TY +LL+  C+   +Q+A  V  +    ++    
Sbjct: 635 ASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 694

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADAREVEMAIEHIK 597
            + +  +    RRG    A  L++ +  +    D H     + +   A +++ A E I+
Sbjct: 695 FVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQ 753


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 176/395 (44%), Gaps = 39/395 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+      G I+ AL++ D   H  V  +   +   +   C+  KL Q + +LD  R+
Sbjct: 143 NVLINAYCKSGEIEEALRVLD---HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD--RQ 197

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            ++      V   ++I   CK   V +A K+ +E+R + CKPD + Y ++ + F   G +
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  + LKK       P      + I   ++ R +C          SG   +D       
Sbjct: 258 DEAIIFLKK------LPSYGCQSDVISHNMILRSLC----------SGGRWMD------- 294

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                      A+     M+ KG  P++ T + L   LC++    + + V +++  + + 
Sbjct: 295 -----------AMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT 343

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            +  S+N ++   C    +  A   ++ M  +G  PD+  YN L+ A C++  +  A  +
Sbjct: 344 PNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 403

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             Q+ + GCS +L +YN +I    +VG+ E A+ L   M  KG+ PD  T TS++ GL +
Sbjct: 404 LSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 463

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           E  +  A + F+      +     I ++ M+ LC+
Sbjct: 464 EGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCK 498



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 183/423 (43%), Gaps = 18/423 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN-E 144
           SY+ ++ +   S +I     VL    V     +++ Y  ++ SL      ++A  V + +
Sbjct: 141 SYNVLINAYCKSGEIEEALRVLDHTSVAP---NAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 145 VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++  C    P++  C  L+     +  +  A+K+F+EM  +G +   + + V I  FC+ 
Sbjct: 198 LQSKCY---PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKE 254

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +L + +  L   +K  +      VI+  +I+   C G R  +A K+L  +  + C P  
Sbjct: 255 GRLDEAIIFL---KKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSV 311

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + + I+       G + +   VL+   K G  P +  +   I G    + I  A E  E+
Sbjct: 312 VTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEI 371

Query: 322 IVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +VS     D    N L+ ++     +D   A+V  + +  KG  P+L + + +   L K 
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVD--DAVVILSQLSSKGCSPSLISYNTVIDGLLKV 429

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K++  VE+ + +       D+ +   +V  L   G++ EA      +K  G+ P+   Y
Sbjct: 430 GKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIY 489

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           NS+M   C+      A      M A+GC     +Y  LI   +  G  E A +L + +  
Sbjct: 490 NSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYS 549

Query: 499 KGV 501
           +G+
Sbjct: 550 RGL 552



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 7/214 (3%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F  +M  KG++P +   + L +  CK  ++     +  +L  +    D  SYNV+++  C
Sbjct: 91  FLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYC 150

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            SG + EA  V+       + P+ + Y++++ + C    L+ A ++ D+   S C  ++ 
Sbjct: 151 KSGEIEEALRVLDHTS---VAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVV 207

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T  +LI    +   +  A++LF+ M  KG  PD  TY  L++G C+E  L  A     K 
Sbjct: 208 TCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKL 267

Query: 532 VNHDVMLARSILSTFMI--SLCRRGHFLVATKLL 563
            ++       ++S  MI  SLC  G ++ A KLL
Sbjct: 268 PSYGCQ--SDVISHNMILRSLCSGGRWMDAMKLL 299



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 5/187 (2%)

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G L E    ++ M  KG  PDV    +L+   C+    + A ++   +  SG   +  +
Sbjct: 82  NGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANS 141

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN+LI+ + + GEIE ALR+  +     VAP+A TY ++L  LC    L+ A +V ++ +
Sbjct: 142 YNVLINAYCKSGEIEEALRVLDHT---SVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQL 198

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
                      +  + + C+      A KL   +       D  ++ +L+K       ++
Sbjct: 199 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLD 258

Query: 591 MAIEHIK 597
            AI  +K
Sbjct: 259 EAIIFLK 265


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 200/471 (42%), Gaps = 27/471 (5%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN---AIDSVLKQVKVNKITLDSS 120
           H     F+      P  + S + ++ IL SL  S   N   AI S+  ++++N IT    
Sbjct: 28  HDAISSFYRMLRMNP--SPSIIEFNKILGSLVKSNNNNYPIAI-SLYHRLQLNAITPSIV 84

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            +  +I           AFSV  ++             +L+  L  +G +  AL   D +
Sbjct: 85  TFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHV 144

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKG 239
             RG   + + +G+ I   C   K+G+  + L  +RK +  ++N +V+    II   CK 
Sbjct: 145 IARGFRLNEVSYGILINGLC---KMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKE 201

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K V EA+++  ++ +++  PD + +  +   F ++G   E   +  +     + P    +
Sbjct: 202 KLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTF 261

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
              +  L  E    E K               +VL  ++  V+ ++    +  FN + ++
Sbjct: 262 NILVDALCKEGSTKETK---------------NVLAVMMKEVNQVNKAKHV--FNIIGKR 304

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P + + + + K LCK    DE + ++  +       D  +Y+ ++  LC S R+  A
Sbjct: 305 RVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHA 364

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + ++ +M  +G   DV  Y S + A C+   +  A  L  ++   G   N+ TYNILI  
Sbjct: 365 WELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDG 424

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             + G  E A  +F ++L KG      TY  ++ GLC E     A  +  K
Sbjct: 425 LCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEK 475



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 53/375 (14%)

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  +   L++    P  + +  V   +  +G +     VL K  K+G  P T      I 
Sbjct: 67  AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIK 126

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVP 363
           GL +  ++ EA    + +++  F +++     LI  +  + + R+A+     +  K    
Sbjct: 127 GLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNT 186

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            +   S +  +LCK     E  E+Y  +       D+ +++ ++   C  G+ +EA+G+ 
Sbjct: 187 NVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLF 246

Query: 424 QEMKRKGLDPDVSFYNSLMEACCRE-----------------DLLRPAKKLWDQMFASGC 466
            EM    ++PDV  +N L++A C+E                 + +  AK +++ +     
Sbjct: 247 HEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRV 306

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---------------------- 504
           + ++ +Y I+I +  ++  ++ AL LF+ M  KG+ PD                      
Sbjct: 307 TPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWE 366

Query: 505 -------------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
                          TYTS L  LC+   +  A  +  K  +  +    +  +  +  LC
Sbjct: 367 LLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLC 426

Query: 552 RRGHFLVATKLLRGL 566
           + G F  A  + + L
Sbjct: 427 KEGRFENAQVIFQDL 441



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  L+ ++  +  + ++ T+N +I+ +  +GE++ A  +   +L+ G  PD  T T+L++
Sbjct: 67  AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIK 126

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
           GLC    +  A    +  +     L        +  LC+ G    A ++LR +   L   
Sbjct: 127 GLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKL--V 184

Query: 574 DSHVILLKSLADA 586
           +++V++  ++ D+
Sbjct: 185 NTNVVMYSTIIDS 197


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 221/509 (43%), Gaps = 45/509 (8%)

Query: 50  SLVARVINPY-----LLTHHSLALGFFNWA----SQQPNFTHSP--LSYHSILKSLSLSR 98
           SL+A  ++P      LL H   + G    A    S    F  SP  ++Y+++LK+     
Sbjct: 200 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKG 259

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPS------LIQGKNTQKAFSVFNEVKFNCEDI 152
            +    ++L ++K   I    + Y  ++ +      + Q  N  +A + F          
Sbjct: 260 MLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFG--------F 311

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAK 204
            P++   N L A L   G +D A K+ DEM H        V ++T+    F ++   +A 
Sbjct: 312 EPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDA- 370

Query: 205 LGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
               L++L+E+R +  ++S++  +++    + G C+  ++EEA   L  +      PD I
Sbjct: 371 ----LNLLEEMRDKGVKSSLVTHNIV----VKGLCREGQLEEALGRLKMMTEEGLAPDVI 422

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + +    +V +  V++ +  + G+   T      +  L  E+R  EA+EL    
Sbjct: 423 TYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSP 482

Query: 323 VSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
               F  D+     ++ +      P  A+  ++ M ++   P++ T + L K LC   K 
Sbjct: 483 PQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKL 542

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            E ++    L       D  +YN+++   C  G L +A+    +M      PDV   N+L
Sbjct: 543 TEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTL 602

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           M   C    L  A KL++     G   ++ TYN LI    + G+++ AL  F +M  +G+
Sbjct: 603 MNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGL 662

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNK 530
            PDA TY  +L  L +    + A  + +K
Sbjct: 663 QPDAFTYNVVLSALSEAGRSEEAQNMLHK 691



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 191/449 (42%), Gaps = 24/449 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+    S G + +AL     M   G+    + +   +   C    LG+  ++L   R 
Sbjct: 214 NLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLL--ARM 271

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           ++  +         ++  + +   +++A  V++ +     +PD   Y ++A      G V
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331

Query: 278 FEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDD 332
            E   +  +   L  V+P    Y   +      +R  +A    +E+ +  V       + 
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 333 VLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK-RNKSDELVEVYK 389
           V+  L   G +       A+     M E+G  P + T + L    CK RN +   V + +
Sbjct: 392 VVKGLCREGQL-----EEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 390 VLSAN---DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++ +    D FT     N ++  LC   R  EA  +++   ++G  PD   Y ++M A  
Sbjct: 447 MVRSGLKMDTFT----LNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYF 502

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +E+   PA  LWD+M     + ++ TYN LI     +G++  A+   + +++KG+ PD T
Sbjct: 503 KENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDT 562

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY  ++   C+E +L+ AF+  NK + +         +T M  LC  G    A KL    
Sbjct: 563 TYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESW 622

Query: 567 SSDLGHSD--SHVILLKSLADAREVEMAI 593
           +      D  ++  L+++L    +V+ A+
Sbjct: 623 AEKGKKVDVITYNTLIQALCKDGDVDTAL 651



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 181/418 (43%), Gaps = 6/418 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++ + +    I    +V++ +       D   Y  +   L Q     +AF + +E+
Sbjct: 282 TYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEM 341

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           + +   + P++   N+L+          +AL + +EM  +GV+ S +   + +   C   
Sbjct: 342 E-HLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREG 400

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +L + L  L  +   E  +    +    +I  +CK + V +AF ++DE+     K D   
Sbjct: 401 QLEEALGRLKMMT--EEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFT 458

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
              +           E E +L+   + G  P    Y   +     E +   A  L + + 
Sbjct: 459 LNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMS 518

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
             K T      N LI  + +I   + AI   N +++KG VP  +T + +    CK    +
Sbjct: 519 KRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLE 578

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +  + +  +  N +  D+ + N +++ LC  G+L +A  + +    KG   DV  YN+L+
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLI 638

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           +A C++  +  A   +  M A G   +  TYN+++S  SE G  E A  + H + E G
Sbjct: 639 QALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 190/450 (42%), Gaps = 49/450 (10%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           ++ D   Y  ++ +  + + +  A ++  E++           N ++  L  +G ++ AL
Sbjct: 347 VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEAL 406

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
                M+  G+    I +   I  +C+   + +   ++DE+ +    M   ++  +L  +
Sbjct: 407 GRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLL--Y 464

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA----EEFKLMGSVFEREVVLKKKRKL 290
             CK KR EEA ++L     R   PD ++Y  V     +E K   +++  + + K+K   
Sbjct: 465 NLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRK--- 521

Query: 291 GVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRS 348
            + P    Y   I GL    ++ EA  +L E++  G    DD   N +I +     D   
Sbjct: 522 -LTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG-LVPDDTTYNIIIHAYCKEGDLEK 579

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A  F N M+E    P + T + L   LC   K ++ +++++  +      D+ +YN ++ 
Sbjct: 580 AFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQ 639

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--- 465
            LC  G +  A     +M+ +GL PD   YN ++ A         A+ +  ++  SG   
Sbjct: 640 ALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLS 699

Query: 466 --------------------------C-------SGNLKTYNILISKFSEVGEIEGALRL 492
                                     C        G+ ++YN  + +    G+++ A  +
Sbjct: 700 ERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAV 759

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              M++KG++ D++TY +L+EGL +    Q
Sbjct: 760 LDEMMQKGMSVDSSTYITLMEGLIKRQKRQ 789



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 9/223 (4%)

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           ++V++ L A     +  ++N++V   C+ G L +A   +  M+  GL PDV  YN+L++A
Sbjct: 195 LDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKA 254

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            CR+ +L  A+ L  +M   G +    TYN L+S ++ +G I+ A  +   M   G  PD
Sbjct: 255 HCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPD 314

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC----RRGHFLVAT 560
             TY  L  GLCQ   +  AF++ ++  +  ++    +    ++  C    R    L   
Sbjct: 315 LWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLL 374

Query: 561 KLLR--GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           + +R  G+ S L    +H I++K L    ++E A+  +K + E
Sbjct: 375 EEMRDKGVKSSLV---THNIVVKGLCREGQLEEALGRLKMMTE 414



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 4/255 (1%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL+AL  S S+  P++++  F  +I     P   T + L    C +    + +     + 
Sbjct: 179 VLSALARSPST-SPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQ 237

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +YN ++   C  G L EA  ++  MK++G+ P  + YN+L+ A  R   ++
Sbjct: 238 GFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIK 297

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSL 511
            A  + + M A G   +L TYN+L +   + G+++ A +L   M     V+PD  TY +L
Sbjct: 298 QATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTL 357

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           ++   +      A  +  +  +  V  +    +  +  LCR G    A   L+ ++ +  
Sbjct: 358 VDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGL 417

Query: 572 HSDSHVILLKSLADA 586
             D  VI   +L DA
Sbjct: 418 APD--VITYNTLIDA 430


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/544 (21%), Positives = 223/544 (40%), Gaps = 71/544 (13%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT +    + +LK L  +  +     +++++    ++ D   Y  +I  L + K  ++A 
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAV 199

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +  E++          C +L+  L  DG +D A+++ + M  +G +   + +G  I  F
Sbjct: 200 GLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF 259

Query: 200 CENAKLGQVLSMLDEVR------------------------KRENSMINGS--------- 226
           C N  L +   + DE+                         K  N+++N           
Sbjct: 260 CNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDV 319

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V    +I G CK  R   A  +L+ +  +  +P  + Y ++       G V +   +L+ 
Sbjct: 320 VTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRM 379

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSI 344
             + G       Y   + GL  + ++ EA +L   +   +  ++ +V   N LIG +   
Sbjct: 380 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 439

Query: 345 DPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
              + A+     M++KG    L T + L     K  K  E +E++K +    +  +  +Y
Sbjct: 440 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 499

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           ++++   C    L  A G+  EM+  GL+P +  YN+LM + C+E  L  AK L+ +M  
Sbjct: 500 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559

Query: 464 SGC-----------SGNLK------------------------TYNILISKFSEVGEIEG 488
           + C            G LK                        T++ LI++ S++GE++ 
Sbjct: 560 ANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDE 619

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A      M+  G  PDA  Y SLL+GL  + +      + ++      +L R I+ST + 
Sbjct: 620 AKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILT 679

Query: 549 SLCR 552
            LC 
Sbjct: 680 CLCH 683



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 12/284 (4%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF--FNFMIEKGR---VPTLSTLSNLS 372
           +G V+  G FT++  ++N ++  +     R+  VF     + E GR    P + + + L 
Sbjct: 132 VGLVLKRG-FTVNVFIMNIVLKGLC----RNGGVFEAMGLIREMGRKSVSPDIVSYNTLI 186

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             LCK  K  E V +   + A   F +  +   ++  LC  GR+ EA  +++ MK+KG D
Sbjct: 187 NGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD 246

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            DV  Y +L+   C    L   K+L+D+M   G S N+ TY+ L+     +G+ + A  +
Sbjct: 247 ADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTV 306

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            + M E G+ PD  TYT L++GLC++     A ++ N  V      +    +  +  LC+
Sbjct: 307 LNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK 366

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIE 594
            G  + A K+LR +      +D  ++  L+K L D  +V+ A++
Sbjct: 367 EGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALK 410



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 182/413 (44%), Gaps = 13/413 (3%)

Query: 128 SLIQGKNTQ--KAFSVFNE-VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSH 182
           SL Q  N+Q  +A S+F+  + FN   + P    CN L+  LA       A  ++  M+H
Sbjct: 46  SLCQKPNSQFTEAVSLFHSALDFN---LLPSWATCNFLVDALARSRNYGLAFSVYRRMTH 102

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
             V  S       I  F +  K      ++  V KR  ++     I  +++ G C+   V
Sbjct: 103 VDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTV--NVFIMNIVLKGLCRNGGV 160

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA  ++ E+  +   PD ++Y  +         + E   +L +    G  P +      
Sbjct: 161 FEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTL 220

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           + GL  + R+ EA EL E +    F  D  +   LI G  ++ +       F+ M+ KG 
Sbjct: 221 MDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGI 280

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
              + T S L   LC+  +  E   V   ++ +    D+ +Y  ++  LC  GR   A  
Sbjct: 281 SANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMD 340

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++  M  KG +P    YN L+   C+E L+  A K+   M   G   ++ TYN L+    
Sbjct: 341 LLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLC 400

Query: 482 EVGEIEGALRLFHNML--EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           + G+++ AL+LF++M   E  + P+  T+  L+ GLC+E  L  A ++  K V
Sbjct: 401 DKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMV 453



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 34/335 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I  F   ++ +  F V+  +  R    +     IV +     G VFE   ++++  +  
Sbjct: 115 LIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKS 174

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           V+P    Y   I GL      C+AK+L E                            A+ 
Sbjct: 175 VSPDIVSYNTLINGL------CKAKKLKE----------------------------AVG 200

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
               M   G  P   T + L   LCK  + DE +E+ + +    +  D+  Y  ++S  C
Sbjct: 201 LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFC 260

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G L     +  EM  KG+  +V  Y+ L+   CR    + A  + + M   G   ++ 
Sbjct: 261 NNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVV 320

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY  LI    + G    A+ L + M+EKG  P   TY  LL GLC+E  +  AF++    
Sbjct: 321 TYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMM 380

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +           +T M  LC +G    A KL   +
Sbjct: 381 IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 415



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 6/303 (1%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P+        ++++G    +  ++ + K LC+     E + + + +       D+ SYN 
Sbjct: 125 PQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNT 184

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++ LC + +L+EA G++ EM+  G  P+     +LM+  C++  +  A +L + M   G
Sbjct: 185 LINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKG 244

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              ++  Y  LIS F   G ++    LF  ML KG++ +  TY+ L+ GLC+    + A 
Sbjct: 245 FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEAN 304

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKS 582
            V N    H +       +  +  LC+ G    A  LL  L  + G   S+V   +LL  
Sbjct: 305 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLN-LMVEKGEEPSNVTYNVLLSG 363

Query: 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL--QEKCLD 640
           L     V  A + ++ + E            L   L      +  L L +++   E CL+
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 423

Query: 641 SEI 643
             +
Sbjct: 424 PNV 426



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 108/231 (46%), Gaps = 13/231 (5%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+  ++   +P+ +T + L   L +         VY+ ++  D      S + ++ 
Sbjct: 58  AVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIE 117

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
               + + +  +GV+  + ++G   +V   N +++  CR   +  A  L  +M     S 
Sbjct: 118 CFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSP 177

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ +YN LI+   +  +++ A+ L   M   G  P++ T T+L++GLC++  +  A E+ 
Sbjct: 178 DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELL 237

Query: 529 ----NKSVNHDVMLARSILSTFMISLCR-----RGHFLVATKLLRGLSSDL 570
                K  + DV+L  +++S F    C      RG  L    L +G+S+++
Sbjct: 238 EAMKKKGFDADVVLYGTLISGF----CNNGNLDRGKELFDEMLGKGISANV 284


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 211/468 (45%), Gaps = 22/468 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVN----KITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S++++L +   +R+ +  D+    +       +I  +   Y  ++ SL    +  +A ++
Sbjct: 121 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTL 180

Query: 142 FNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F+ ++     + P+    ++L+  LA    +D+AL + DEM   GV+   + +   +   
Sbjct: 181 FDSLRR--RQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGC 238

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  +  +V+ + D++ K   +  N +   V++  G CK  R +E  +V + +     +P
Sbjct: 239 FKAGEFEKVMRVWDKLVKDPGARPNLATYNVML-DGLCKFGRFKEVGEVWERMVANNLQP 297

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y I+       G V     V  +  K G+      Y   + G     R+ EA +  
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 320 EVIVSGKFTIDDDV--LNALI-GSVSSIDPRSAIVFFNFMIEK--GRVPTLSTLSNLSKN 374
           +   S  F    ++   N +I G   S     AI  ++ ++EK    +P   T   L   
Sbjct: 358 D---SAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD-LLEKDVACIPDTVTFGTLIHG 413

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+   +++   +++    +    D+ SY+ M++ LC  GRL +A  V ++M + G  P+
Sbjct: 414 LCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPN 473

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN+L+   C+      A +++ +M  +GCS  + TYN LI    +  + + A  +  
Sbjct: 474 SHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAR 533

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVML 538
            M+E G  PD TTY SL+ GL  +  +  A  ++     K +  DVM+
Sbjct: 534 EMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMM 581



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/522 (21%), Positives = 212/522 (40%), Gaps = 59/522 (11%)

Query: 39  HQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN----------WAS--QQPNFTHSPLS 86
           H L L D +  S V     P ++ +++L  G F           W    + P    +  +
Sbjct: 211 HALDLLDEMPRSGV----QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLAT 266

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ +L  L    +   +  V +++  N +  D   Y  +I  L +  +   A  V++E+ 
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                I   + NSL+      G +  A K +D     G+  +   + + I    ++  + 
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVD 385

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + + + D + K + + I  +V    +IHG C+     +AF + +E R+   + D  +Y  
Sbjct: 386 EAIELWDLLEK-DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +      +G + +   V +K  K G  P ++ Y   I G       C+     +      
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGF------CQVYRTSD------ 492

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                                 A+  ++ M + G  PT+ T + L   LCK  K  E   
Sbjct: 493 ----------------------AVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASS 530

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V + +  N +  D+ +Y  ++  L +  ++ +A  + +++  KGL  DV  +N L+   C
Sbjct: 531 VAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590

Query: 447 REDLLRPAKKLWDQMF-ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
               +  A  ++  M     C  NL TYN L+    E G I+ A  L+ ++ E G+ PD 
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +Y + ++GLC    +    ++       D +L+R I+ T +
Sbjct: 651 ISYNTRIKGLCSCDRIHEGIQLL------DEVLSRGIIPTVI 686



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/459 (21%), Positives = 204/459 (44%), Gaps = 16/459 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L+   +++    +L ++  + +  D   Y  ++    +    +K   V+++
Sbjct: 194 ITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDK 253

Query: 145 VKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +    +D G  P +   N +L  L   G      ++++ M    ++   I +G+ I   C
Sbjct: 254 L---VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC 310

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
            +  +     +  E+ K    ++  + +   ++ GFC+  RV+EA+K  D       + +
Sbjct: 311 RSGDVDGAARVYSEIIK--TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-N 367

Query: 261 FIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL- 318
              Y I+ +     G V E  E+    ++ +   P T  +   I GL       +A  + 
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E  VSGK  +D    +++I  + ++     A+  +  M + G  P     + L    C+
Sbjct: 428 EEARVSGK-QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             ++ + V +Y  ++ N     + +YN ++  LC + + +EA  V +EM   G  PD++ 
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITT 546

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y SL+     +  +  A  +W Q+   G   ++  +NILI      G+++ AL +F +M 
Sbjct: 547 YGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMK 606

Query: 498 E-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           E K   P+  TY +L++GL +   +  A  ++  S+  D
Sbjct: 607 EKKNCPPNLVTYNTLMDGLYETGYIDKAATLWT-SITED 644



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 178/417 (42%), Gaps = 16/417 (3%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N     ++Y  ++  L  S  ++    V  ++    + +D+++Y  ++    Q    Q+A
Sbjct: 294 NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEA 353

Query: 139 FSVFNEVKF-NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFI 196
           +  ++   F    ++     N ++  L   G +D A++++D +         T+ FG  I
Sbjct: 354 WKFWDSAGFAGLRNL--RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDEL 252
              C+N    +  ++ +E R      ++G  + V     +I+G C   R+ +A KV +++
Sbjct: 412 HGLCQNGFANKAFTIFEEAR------VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM 465

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
               CKP+   Y  +   F  +    +   +  K    G +P    Y   I GL    + 
Sbjct: 466 DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKY 525

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA  +   +V   FT D     +LI G  S      A+  +  ++ KG    +   + L
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNIL 585

Query: 372 SKNLCKRNKSDELVEVYKVLS-ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
              LC   K DE + V+  +    +   ++ +YN ++  L  +G + +A  +   +   G
Sbjct: 586 IHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDG 645

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           L+PD+  YN+ ++  C  D +    +L D++ + G    + T+NIL+    + G I+
Sbjct: 646 LEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 2/234 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L T + + ++LC R   D  V ++  L       D  +Y+ ++  L    RL  A  +
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDL 215

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFS 481
           + EM R G+ PDV  YN+L+  C +        ++WD++    G   NL TYN+++    
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G  +    ++  M+   + PD  TY  L+ GLC+  ++  A  V+++ +   +++  +
Sbjct: 276 KFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAA 335

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLS-SDLGHSDSHVILLKSLADAREVEMAIE 594
           + ++ +   C+ G    A K       + L +  ++ I++K L D+  V+ AIE
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIE 389



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/462 (21%), Positives = 198/462 (42%), Gaps = 34/462 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH----RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           N+LL          +A   F  +SH    R +  +   + + +   C    L + +++ D
Sbjct: 123 NALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFD 182

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            +R+R+  +    +    ++ G  K  R++ A  +LDE+     +PD + Y        L
Sbjct: 183 SLRRRQ--VAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYN------AL 234

Query: 274 MGSVF---EREVVLKKKRKL----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +G  F   E E V++   KL    G  P    Y   + GL    R  E  E+ E +V+  
Sbjct: 235 LGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANN 294

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D      LI G   S D   A   ++ +I+ G V   +  ++L K  C+  +   + 
Sbjct: 295 LQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR---VQ 351

Query: 386 EVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLM 442
           E +K   +  +    ++ +YN+M+  L  SG + EA  +   +++     PD   + +L+
Sbjct: 352 EAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+      A  ++++   SG   ++ +Y+ +I+    VG +  A++++  M + G  
Sbjct: 412 HGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK 471

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P++  Y +L+ G CQ      A  +++K  ++         +T +  LC+   +  A+ +
Sbjct: 472 PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSV 531

Query: 563 LR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWI 599
            R     G + D+    S   L++ L   ++++ A+   K I
Sbjct: 532 AREMVENGFTPDITTYGS---LIRGLFSDKKIDDALSIWKQI 570


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 225/507 (44%), Gaps = 34/507 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++S++ + +      +++ VL ++K  K  +    +  I  +  +    +KA  +F+ +
Sbjct: 92  TFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRM 151

Query: 146 --KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFS--TIGFGVFIWKFC 200
             +F C+  G    NS+L V+  +G    AL+ ++  +  +GV  S   + F + I   C
Sbjct: 152 ACEFECKRTGKSF-NSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMC 210

Query: 201 ENAKLGQVLSMLDE--VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           +   +   + +  +  +RK E  +         ++ G CK  R++EA  +LDE++I  C 
Sbjct: 211 KVGLVDDAIQVFRDMTIRKCEPDVYT----YCTLMDGLCKADRIDEAVSLLDEMQIDGCF 266

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P  + + ++       G +     ++      G  P    Y   I GL ++ ++ +A  L
Sbjct: 267 PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISL 326

Query: 319 GEVIVSGKFTID----DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            + +VS K   +      ++N L+    ++D    +     M E+G        S L   
Sbjct: 327 LDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLAL---MEERGYCVNEYVYSTLISG 383

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           L K  KS E + ++K ++   Y  +   Y+ ++  LC  G+  +A  V+ EM  KG  P+
Sbjct: 384 LFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPN 443

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
               +SLM+          A ++W  M     + N   Y++LI    + G+++ A+ ++ 
Sbjct: 444 AYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWT 503

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH------DVMLARSILSTFMI 548
            ML KG  PD   Y+S++ GL     ++ A +++N+ +        DV+    +L+T   
Sbjct: 504 QMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNT--- 560

Query: 549 SLCRRGHFLVATKLL-----RGLSSDL 570
            LC++     A  LL     RG   DL
Sbjct: 561 -LCKQSSISRAIDLLNSMLDRGCDPDL 586



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 191/454 (42%), Gaps = 42/454 (9%)

Query: 67  ALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           AL F+N        + SP  L+++ ++K++     ++    V + + + K   D   Y  
Sbjct: 180 ALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCT 239

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++  L +     +A S+ +E++ +     P   N L+  L   G +  A K+ D M  +G
Sbjct: 240 LMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKG 299

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
              + + +   I   C   KL + +S+LD        M++                    
Sbjct: 300 CIPNEVTYNTLIHGLCLKGKLEKAISLLDR-------MVSS------------------- 333

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
                      +C P+ + Y  +       G   +   VL    + G       Y   I 
Sbjct: 334 -----------KCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLIS 382

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL  E +  EA  L + +    + ++  V +A+I G      P  A+   + M  KG  P
Sbjct: 383 GLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTP 442

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              T S+L K   +   S   VEV+K ++ +++  +   Y+V++  LC  G+++EA  V 
Sbjct: 443 NAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVW 502

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILISKFS 481
            +M  KG  PDV  Y+S++       L+  A +L+++M   G     ++ TYNIL++   
Sbjct: 503 TQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLC 562

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +   I  A+ L ++ML++G  PD  T T  L  L
Sbjct: 563 KQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRML 596


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 201/470 (42%), Gaps = 49/470 (10%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN---TQKAFSVFNEVK 146
           I+K  S    +   + + +++ V  +  DS  YR ++    +  N     K  SV  E  
Sbjct: 176 IIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERG 235

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           F  ++    +   +++  +  GY   AL  F  +   G+E + I F   I   C+   + 
Sbjct: 236 FVVDNATFTL---IISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIK 292

Query: 207 QVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFI 262
           Q   ML+E+  +    N   + S     +I G CK    E+AF++  +L R    KP+ +
Sbjct: 293 QAFEMLEEMVGKGWKPNVYTHTS-----LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVL 347

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   +     +   E++L + ++ G+ P TN Y   I G       C+A       
Sbjct: 348 TYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGH------CKA------- 394

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
             G F    D++N                    M  +G  P L T + +   LCKR +  
Sbjct: 395 --GNFERAYDLMN-------------------LMSSEGFSPNLCTYNAIVNGLCKRGRVQ 433

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  ++ +    N    D  +YN+++S  C    +R+A  +  +M + G+ PD+  Y +L+
Sbjct: 434 EAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLI 493

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              CRE+ ++ ++  +++    G     KTY  +I  +   G +  A++ FH + + G A
Sbjct: 494 AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCA 553

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           PD+ TY +++ GLC+++    A  +++  +   ++       T     C+
Sbjct: 554 PDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 116/495 (23%), Positives = 214/495 (43%), Gaps = 29/495 (5%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           + L FF+WA   P F H    Y  I+ ++SL    N+  +               V R +
Sbjct: 97  VTLSFFHWAIGYPKFRHFMRLY--IVCAMSLIGNRNSEKAC-------------EVMRCM 141

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           + S  +    ++A  +  E+            N ++ V +  G ++ A  +F+EM  RGV
Sbjct: 142 VESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGV 201

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-----VLIIHGFCKGK 240
           +  +I + V +  +C   K+G +L    E  K  + M+    +       LII  F    
Sbjct: 202 QPDSISYRVMVVMYC---KIGNIL----EADKWLSVMLERGFVVDNATFTLIISRFSGKG 254

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
               A      L     +P+ I +  + E     GS+ +   +L++    G  P    + 
Sbjct: 255 YTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHT 314

Query: 301 EFILGLIVERRICEAKELG-EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
             I GL  +    +A  L  +++ S     +     A+I      D    A +  + M E
Sbjct: 315 SLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKE 374

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G VP  +T + L    CK    +   ++  ++S+  +  ++ +YN +V+ LC  GR++E
Sbjct: 375 QGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQE 434

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           AY ++++  + GL PD   YN LM   C+++ +R A  L+++M   G   ++ +Y  LI+
Sbjct: 435 AYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIA 494

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F     ++ +   F   +  G+ P   TYTS++ G C+E NL  A + F++  +H    
Sbjct: 495 VFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAP 554

Query: 539 ARSILSTFMISLCRR 553
                   +  LC++
Sbjct: 555 DSITYGAIISGLCKQ 569



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 1/222 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A + F  M  +G  P   +   +    CK     E  +   V+    +  D  ++ +++S
Sbjct: 189 AELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIIS 248

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                G    A    + +   GL+P++  +  ++E  C+   ++ A ++ ++M   G   
Sbjct: 249 RFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKP 308

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           N+ T+  LI    + G  E A RLF  ++  +   P+  TYT+++ G C+E  L  A  +
Sbjct: 309 NVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEML 368

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            ++     ++   +  +T +   C+ G+F  A  L+  +SS+
Sbjct: 369 LSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSE 410


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 177/450 (39%), Gaps = 59/450 (13%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDE 214
           N L+  L  +  +  A KM DEM+ +G     + +G  +   C   ++ +   VLS    
Sbjct: 173 NLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPP 232

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           V    N+          +I   C+  R++E F V+ ++  R  +P+ I Y  +   F   
Sbjct: 233 VAASYNA----------VILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKA 282

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G +     +L +    G  P    +   + GL  + R+ +A ++                
Sbjct: 283 GELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDM---------------- 326

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
                             +  M+ +G  P+  + + L + LC          V   +  +
Sbjct: 327 ------------------WKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQH 368

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
             F +  +Y+ ++     +G L  A  +  +M R G  P+V  Y +++   C++ +   A
Sbjct: 369 GCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQA 428

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           + L D+M    C  N  T+N LI        +  AL +FH M   G  P+  TY  LL G
Sbjct: 429 ESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHG 488

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSD 569
           L +E N   A ++  +  NH + L+    +T +  LC     R   F V   ++RG+  D
Sbjct: 489 LFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPD 548

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWI 599
              + +   ++ +     EV MA     WI
Sbjct: 549 ---AFTFTAIIHAYCKEGEVRMA----AWI 571



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 165/407 (40%), Gaps = 50/407 (12%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--------PEICN--SLLAVLASDGYI 170
           V R + P++I       AF    E++  C  +         P +    +L+  L +DG +
Sbjct: 261 VGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRV 320

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
            +AL M+  M   G   ST+ + V I   C    L    S+L+++ ++     N    + 
Sbjct: 321 HDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDM-EQHGCFPNARTYST 379

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF--KLMGSVFEREVVLKKKR 288
           LI  GF K   ++ A  + +++    CKP+ + Y  +   F  KLM +  + E ++ K  
Sbjct: 380 LI-DGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFN--QAESLIDKML 436

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
                P T  +   I      R +C  + +G                             
Sbjct: 437 VENCPPNTVTFNTLI------RSLCNCRRVGR---------------------------- 462

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M   G  P   T + L   L +     + +++   +  +     + +YN +VS
Sbjct: 463 ALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVS 522

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC     REA   +  M  +G+ PD   + +++ A C+E  +R A  +   M    C  
Sbjct: 523 GLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGR 582

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           N+  Y IL+++     ++E A+     ML +G+ P+  T+  L+ G+
Sbjct: 583 NILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGV 629



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/414 (17%), Positives = 153/414 (36%), Gaps = 88/414 (21%)

Query: 47  LSPSLVARVI----NPYLLTHHSLALGFFN----------WASQ-QPNFTHSPLSYHSIL 91
           ++ +++AR++     P + T  +L  G FN          W       +  S +SY+ ++
Sbjct: 287 MACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLI 346

Query: 92  KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151
           + L     +    SVL  ++ +    ++  Y     +LI G                   
Sbjct: 347 RGLCSVGDLKGASSVLNDMEQHGCFPNARTYS----TLIDG------------------- 383

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
                        +  G +D A+ ++++M+  G + + + +   +  FC+     Q  S+
Sbjct: 384 ------------FSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESL 431

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           +D++   EN   N +V    +I   C  +RV  A  V  E+R   C P+           
Sbjct: 432 IDKMLV-ENCPPN-TVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPN----------- 478

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
                                  RT  Y E + GL  E    +A ++   + +    +  
Sbjct: 479 ----------------------GRT--YNELLHGLFREGNCGDALQMVIEMQNHGIELSL 514

Query: 332 DVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N ++  +  +   R A+ F   MI +G  P   T + +    CK  +      +   
Sbjct: 515 VTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGA 574

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           ++  +   ++  Y ++++ LC   +L +A   + +M  +G+ P+   +N L+  
Sbjct: 575 MNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRG 628


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 220/508 (43%), Gaps = 20/508 (3%)

Query: 32  PLLEQTLHQLG--LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           P LE  L + G  +R  L   +++R  +       +L   FF WAS+QP + HS   Y +
Sbjct: 92  PKLELALQESGVIMRSGLPERVLSRCGDA-----GNLGYRFFVWASKQPGYRHSYEVYKA 146

Query: 90  ILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KF 147
           ++K+L   RQ  A+ ++++++ K N   L   V+  ++      +  +KA  V +E+ K+
Sbjct: 147 MIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKY 206

Query: 148 NCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            CE   P+  +   LL  L  +G +  A  +F++M  R    +   F   ++ +C   K+
Sbjct: 207 GCE---PDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLYGWCREGKI 262

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L  V+ +E       V+   ++ G+ +  ++ +AF +L E++   C P+  ++ 
Sbjct: 263 MEAKHVL--VQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFT 320

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVS 324
           I+ + F     + E   +  + +  G       Y   I G        +A E L ++I  
Sbjct: 321 ILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQK 380

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           G        L  ++      +    +     M + G VP L+  + + + +CK     E 
Sbjct: 381 GHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEA 440

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSLM 442
           V ++  + A      +++Y +MV    + G L EA    +EM  +GL   P       L 
Sbjct: 441 VRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELT 500

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  R + L  AK +W  M   GC  N+  + I I      G ++ A     +M++  + 
Sbjct: 501 NALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLM 560

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNK 530
           P   T+  L+ GL +  + Q A E+  K
Sbjct: 561 PQPDTFAKLMRGLKKLFHRQLAVEITEK 588



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 161/340 (47%), Gaps = 9/340 (2%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V ++++E+RK    M+   V  VL+   F   + V++A +VLDE+    C+PD   
Sbjct: 156 QFGAVWALIEEMRKENPYMLTPEVFIVLM-RRFASVRMVKKAVEVLDEMPKYGCEPDEYV 214

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   + +  R +   P    +   + G   E +I EAK +   I 
Sbjct: 215 FGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIK 273

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCKRN 379
              F  D  V N L+G  +     R A   F+ + E  +V   P  ++ + L ++ CK  
Sbjct: 274 EAGFEPDIVVYNNLLGGYAQAGKMRDA---FDLLAEMKKVNCGPNAASFTILIQSFCKTE 330

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE + ++  +  +    D+ +Y  ++S  C  G   +AY ++ +M +KG DP    Y 
Sbjct: 331 KMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYL 390

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M A  +++ L    +L ++M   GC  +L  YN +I    ++G+++ A+RL+  M   
Sbjct: 391 CIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAG 450

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           G+ P   TY  ++ G   +  L  A + F + V   ++ A
Sbjct: 451 GLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSA 490



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 97/200 (48%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L   ++L    C+  K  E   V   +    +  D+  YN ++     +G++R+A+ +
Sbjct: 244 PNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDL 303

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EMK+    P+ + +  L+++ C+ + +  A +++ +M  SGC  ++ TY  LIS F +
Sbjct: 304 LAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCK 363

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G  + A  +  +M++KG  P   +Y  ++    ++  L+   E+  +      +   +I
Sbjct: 364 WGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNI 423

Query: 543 LSTFMISLCRRGHFLVATKL 562
            +T +  +C+ G    A +L
Sbjct: 424 YNTMIRLVCKLGDLKEAVRL 443


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 166/356 (46%), Gaps = 12/356 (3%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 205

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALI 338
           +   + G   +P    Y   I G   E  + +A    KE+ +  +   F     V++AL 
Sbjct: 206 RMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               ++D   A  F   M+ KG +P   T +NL        +  E V V+K +  +    
Sbjct: 266 -KARAMDKAEA--FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 322

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ + ++++  LC  G+++EA  V   M  KG +P+V  Y  ++     +  L     L+
Sbjct: 323 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLF 382

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D M   G + ++ T+N+LI  ++  G ++ A+ +F+ M + GV PD  TY +++  LC+ 
Sbjct: 383 DLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI 442

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
             +  A E FN+ ++  V   +      +   C  G  L A +L+  + ++  H D
Sbjct: 443 GKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/480 (20%), Positives = 202/480 (42%), Gaps = 17/480 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +     +  ++ H +       R   A+D +L +        D   Y  +
Sbjct: 129 LALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P++   ++++     +G ++ A  +F EM  
Sbjct: 189 LKSLCDQGKSGQ-ADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFC 237
           RG+    + +   +   C+   + +  + L +       M+N  V+        +I+G+ 
Sbjct: 248 RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ-------MVNKGVLPNNWTYNNLIYGYS 300

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              + +EA +V  E+R     PD +   ++       G + E   V       G  P   
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVF 360

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
            Y   + G   +  + +  +L ++++      D    N LI + ++      A++ FN M
Sbjct: 361 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P + T   +   LC+  K D+ +E +  +       D  +Y+ ++   CT G L
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  +I E+   G+  D+ F++S++   C+   +  A+ ++D     G       Y++L
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +  +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F + +   +
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 187/439 (42%), Gaps = 15/439 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVF 142
            SY  +LKSL    +    D +L+ +          V  Y  +I    +  +  KA  +F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLF 242

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+      I P+    +S++  L     +D A     +M ++GV  +   +   I+ + 
Sbjct: 243 KEMVQ--RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +  + + +  E+R+  +S++   V   +++   CK  +++EA  V D + ++   P+
Sbjct: 301 STGQWKEAVRVFKEMRR--HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPN 358

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAK 316
             +Y I+   +   G + +   +       G+AP    +   I       ++++ +    
Sbjct: 359 VFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFN 418

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E+ +  V         V+ AL   +  +D   A+  FN MI++G  P       L +  C
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALC-RIGKMD--DAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
                 +  E+   +  N    D+  ++ +++ LC  GR+ +A  +       GL P   
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAV 535

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ LM+  C    +  A +++D M ++G   N   Y  L++ + ++G I+  L LF  M
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM 595

Query: 497 LEKGVAPDATTYTSLLEGL 515
           L+KG+ P    Y  +++GL
Sbjct: 596 LQKGIKPSTILYNIIIDGL 614



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 3/212 (1%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTDMESYN 404
           P  A+ FF  ++  G    +   ++L K  C+  ++DE +++    +       D+ SY+
Sbjct: 127 PELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 186

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +++  LC  G+  +A  +++ M   G    PDV  Y+++++   +E  +  A  L+ +M 
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMV 246

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +  TY+ ++    +   ++ A      M+ KGV P+  TY +L+ G       +
Sbjct: 247 QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWK 306

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            A  VF +   H ++     LS  M SLC+ G
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 338



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 169/400 (42%), Gaps = 37/400 (9%)

Query: 150 EDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           + I P+I   N L+   A+ G +D A+ +F+EM   GV+   + +   I   C   K+  
Sbjct: 388 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKM-- 445

Query: 208 VLSMLDEVRKRENSMINGSVIA-----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                D+  ++ N MI+  V         +I GFC    + +A +++ E+       D +
Sbjct: 446 -----DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIV 500

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +  +      +G V + + +      +G+ P    Y   + G  +  ++ +A  + + +
Sbjct: 501 FFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560

Query: 323 VSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           VS     +D V   L+     +  ID    +  F  M++KG  P+ + L N+        
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRID--EGLSLFREMLQKGIKPS-TILYNII------- 610

Query: 380 KSDELVEVYKVLSANDYFTDME---------SYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
             D L E  + + A   F +M          +YN+++  L  +    EA  + +E++   
Sbjct: 611 -IDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  ++   N+++    +   +  AK L+  +  SG    + TY+I+I+   + G +E A 
Sbjct: 670 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            +F +M   G  PD+     ++  L ++  +  A    +K
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSK 769



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P    Y  LM+ C R      A   + Q+  +G   N+   N L+  F E    + AL
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 491 R-LFHNMLEKGVAPDATTYTSLLEGLCQE 518
             L H   E G  PD  +Y+ LL+ LC +
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQ 195


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 216/496 (43%), Gaps = 32/496 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVN----KITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S++++L +   +R+ +  D+    +       +I  +   Y  ++ SL    +  +A ++
Sbjct: 122 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTL 181

Query: 142 FNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F+ ++  C  + P+    ++L++    +  +DNAL + DEM    V+   + +   +   
Sbjct: 182 FDSLR--CRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGC 239

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
             N +  + + + +++ +   +  N +   V++  G CK    +EA  V + +     +P
Sbjct: 240 FRNGEFEKAMRVWEQLVRDPGASPNLATYNVML-DGLCKLGMFKEAGDVWERMVANNHQP 298

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  +         V     V  +  K G+ P    Y   + G       C A  +G
Sbjct: 299 DMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGF------CHAGRVG 352

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR------------VPTLST 367
           E   + KF   D +  + I +V+S +     +F   M++K               P + T
Sbjct: 353 E---AWKFW--DSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVT 407

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            S +   LC++  +++ +++ +    +    D  SY+ M+S LC  GRL +A  + +++ 
Sbjct: 408 FSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKIS 467

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
                P+   YN+L+   C+      A +++ QM  + CS    TYN LI    +  +  
Sbjct: 468 MDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYL 527

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A R    MLEKG   D  TY SL+ GLC++  +  A  ++N+ ++  +     + +  +
Sbjct: 528 EASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILI 587

Query: 548 ISLCRRGHFLVATKLL 563
             LC  G    A++LL
Sbjct: 588 HGLCSAGKVDEASQLL 603



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 174/388 (44%), Gaps = 14/388 (3%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRI----RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           ++  F + +R  +A      L      R   P+   Y I+     + G +     +    
Sbjct: 126 LLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSL 185

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SSID 345
           R  G+AP    Y   + G +   R+  A  L + + S +   D    NAL+G    +   
Sbjct: 186 RCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEF 245

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            ++  V+   + + G  P L+T + +   LCK     E  +V++ + AN++  DM +Y  
Sbjct: 246 EKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGT 305

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           M+  LC S  +  A  V  EM + GL PDV  YNSL++  C    +  A K WD M  SG
Sbjct: 306 MIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG 365

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQETNLQA 523
              N+ +YNI++    + G ++ A  L+  +LEK   ++PD  T+++++ GLC++     
Sbjct: 366 IR-NVTSYNIMLKGLFDGGMVDKATDLWE-LLEKDDSLSPDMVTFSTMIHGLCEKGFANK 423

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLK 581
           + ++  ++      L     S+ +  LC+ G    A KL   +S D    +SH+   L+ 
Sbjct: 424 SLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALIN 483

Query: 582 SLADAREVEMAIEHIKWIQES--SPTML 607
               A +   AI     + E+  SPT +
Sbjct: 484 GFCQASKFSDAIRVYSQMAENDCSPTTI 511



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 184/419 (43%), Gaps = 20/419 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH----RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           N+LL          +A   F  +SH    R +  +   + + +   C    L + +++ D
Sbjct: 124 NALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFD 183

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------ 267
            +R R   +    +    ++ GF K  R++ A  +LDE+   E +PD + Y  +      
Sbjct: 184 SLRCR--GLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFR 241

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
             EF+    V+E+ V     R  G +P    Y   + GL       EA ++ E +V+   
Sbjct: 242 NGEFEKAMRVWEQLV-----RDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNH 296

Query: 328 TIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D      +I G   S D  SA   ++ MI+ G VP +   ++L K  C   +  E  +
Sbjct: 297 QPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWK 356

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEAC 445
            +  +S +    ++ SYN+M+  L   G + +A  + + + K   L PD+  +++++   
Sbjct: 357 FWDSMSVSG-IRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGL 415

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C +     + ++ ++   SG   +  +Y+ +IS   + G ++ A++L+  +      P++
Sbjct: 416 CEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNS 475

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             Y +L+ G CQ +    A  V+++   +D        +T +  LC+   +L A++  R
Sbjct: 476 HIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTR 534



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 109/502 (21%), Positives = 197/502 (39%), Gaps = 52/502 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++     + +++    +L ++   ++  D+  Y  ++    +    +KA  V+ +
Sbjct: 195 ITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQ 254

Query: 145 VKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +     D G  P +   N +L  L   G    A  +++ M     +   I +G  I   C
Sbjct: 255 L---VRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLC 311

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-- 258
            +  +     +  E+ K    ++   VI   ++ GFC   RV EA+K  D + +   +  
Sbjct: 312 RSTDVDSAARVYSEMIK--TGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNV 369

Query: 259 ---------------------------------PDFIAYRIVAEEFKLMGSVFEREVVLK 285
                                            PD + +  +       G   +   +L+
Sbjct: 370 TSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILE 429

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           + R  G       Y   I GL  + R+ +A +L E I    F  +  + NALI       
Sbjct: 430 EARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQAS 489

Query: 346 PRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
             S AI  ++ M E    PT  T + L   LCK  K  E     + +       D+ +Y 
Sbjct: 490 KFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYG 549

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-A 463
            ++  LC   ++  A  +  ++  KGL  DV  +N L+   C    +  A +L  +M   
Sbjct: 550 SLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEK 609

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           + C  N+ TYN L+  F E G  + A  L+  +LE G+ PD  +Y + ++GLC       
Sbjct: 610 NNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPE 669

Query: 524 AFEVFNKSVNHDVMLARSILST 545
             ++ N+      MLA  I+ T
Sbjct: 670 GVQLLNE------MLASGIIPT 685



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 187/449 (41%), Gaps = 4/449 (0%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           + P  + +  +Y+ +L  L           V +++  N    D   Y  +I  L +  + 
Sbjct: 257 RDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDV 316

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             A  V++E+          I NSLL      G +  A K +D MS  G+   T  + + 
Sbjct: 317 DSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVT-SYNIM 375

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +    +   + +   +  E+ ++++S+    V    +IHG C+     ++ ++L+E R  
Sbjct: 376 LKGLFDGGMVDKATDLW-ELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTS 434

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             + D  +Y  +       G + +   + +K       P ++ Y   I G     +  +A
Sbjct: 435 GKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDA 494

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             +   +     +      N LI  +   +    A  F   M+EKG +  ++T  +L + 
Sbjct: 495 IRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRG 554

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDP 433
           LC+  K D  + ++  +      TD+  +N+++  LC++G++ EA  ++ EMK K    P
Sbjct: 555 LCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCP 614

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V  YN+LM+          A  LW  +  +G   ++ +YN  I            ++L 
Sbjct: 615 NVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLL 674

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + ML  G+ P A T+  L+  + +   +Q
Sbjct: 675 NEMLASGIIPTAITWNILVRAVIKYGPIQ 703



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--------NLKTYNILISKFS 481
           G +P V  +N+L++A  R      A    D  FAS   G        NL+TYNI++    
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDA----DAFFASLSHGAFGRRIAPNLQTYNIMLRSLC 170

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G+++ A+ LF ++  +G+APD  TY++L+ G  +   L  A  + ++  +++V     
Sbjct: 171 VRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAV 230

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
             +  +    R G F  A ++   L  D G S
Sbjct: 231 CYNALLGGCFRNGEFEKAMRVWEQLVRDPGAS 262


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 138/612 (22%), Positives = 251/612 (41%), Gaps = 82/612 (13%)

Query: 58  PYLLTHHSLALGFFNWASQQPN---FTHSP----LSYHSILKSLSLSRQINAIDSVLKQV 110
           P L T+ SL LG+      +     F   P    +SY +++  L  + +++       ++
Sbjct: 222 PDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARM 281

Query: 111 KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170
           + +        Y  ++ +L +     +A S+F E++    +        L+  L  +G +
Sbjct: 282 REDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRM 341

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKRENSMINGSV 227
           D ALKM +EM  +GV  S + F   I  +C+   +     VL +++  +   N      +
Sbjct: 342 DEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNEL 401

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           I      GFC+GK ++ A  +L+++   +  PD + Y  +      +G V     + +  
Sbjct: 402 IC-----GFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLM 456

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSI 344
            + G +P    +  F++ L    R+ EA ++ E +       ++    ALI        I
Sbjct: 457 IRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKI 516

Query: 345 DPRSAI-------------VFFNFMIE----KGRV----------------PTLSTLSNL 371
           +  +++             + FN MI+    +G+V                PTL T + L
Sbjct: 517 EHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNIL 576

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            + + K    D   E+   L ++ Y  ++ +Y   +   C+ GRL EA  ++ ++K +G+
Sbjct: 577 VEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGV 636

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL-----ISKFSEVGEI 486
             D   YN L+ A     LL  A  +  +MF +GC  +  TY+IL     I K  + G  
Sbjct: 637 LLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSN 696

Query: 487 EGALR------------------------LFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              L                         LF  M E G  P+  TY+ L+ GLC+   L 
Sbjct: 697 PVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLN 756

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL--SSDLGHSDSHVILL 580
            AF +++      +  +  I ++ + S C+ G F  A  LL  +   S L H +S+ +L+
Sbjct: 757 VAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLI 816

Query: 581 KSLADAREVEMA 592
             L +    E A
Sbjct: 817 CGLFEQMNKEKA 828



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 138/604 (22%), Positives = 248/604 (41%), Gaps = 91/604 (15%)

Query: 24  TRPARKWTPLLEQTLHQLGLRDSLSPSLVARV--INPYLLTHHSLALGFFNWASQQPNFT 81
           +RP  +  P L+       L  SL+PSL+  +  +NP  LT    AL FF W  +  NF 
Sbjct: 34  SRPRWRKDPSLKT------LIPSLTPSLLCSLFNLNPDPLT----ALNFFRWIRRHHNFP 83

Query: 82  HSPLSYH--------------------SILKS----------LSLSRQINAIDSV----- 106
           HS  ++H                    S++KS          L+L R++N   +      
Sbjct: 84  HSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQH 143

Query: 107 -----LKQVKVNKITLDSSVYRFI--IPSLIQGKNTQKAFSVF-NEVKFN---------- 148
                L     N++ +  S +  +  + SL +   T    SVF N +  N          
Sbjct: 144 QLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLG 203

Query: 149 --------------CEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                         CE  GP++    SL+     +  ++ A  +F  M  R    + + +
Sbjct: 204 NMAVARLFFVRILRCEP-GPDLFTYTSLVLGYCRNDDVERACGVFCVMPRR----NAVSY 258

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I   CE  KL + L      R RE+          +++   C+  R  EA  +  E+
Sbjct: 259 TNLIHGLCEAGKLHEALEFW--ARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEM 316

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           R R C+P+   Y ++ +     G + E   +L +  + GVAP    +   I G   +R +
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI-GSYCKRGM 375

Query: 313 CE-AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
            E A  +  ++ S K   +    N LI G         A+   N M+E    P + T + 
Sbjct: 376 MEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LC+    D    +++++  + +  D  ++N  +  LC  GR+ EA+ +++ +K K 
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  +   Y +L++  C+   +  A  L+ +M A  C  N  T+N++I    + G+++ A+
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAM 555

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L  +M +  V P   TY  L+E + +E +   A E+ N+ ++          + F+ + 
Sbjct: 556 LLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAY 615

Query: 551 CRRG 554
           C +G
Sbjct: 616 CSQG 619



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/494 (21%), Positives = 201/494 (40%), Gaps = 75/494 (15%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
            VL  ++  K+  +   Y  +I    +GK+  +A ++ N  K     + P++   N+L+ 
Sbjct: 381 GVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLN--KMVESKLSPDVVTYNTLIH 438

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G +D+A ++F  M   G       F  F+   C   ++G+   +L+ ++++    
Sbjct: 439 GLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKA 498

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +  A  +I G+CK  ++E A  +   +   EC P+ I + ++ +  +  G V +  +
Sbjct: 499 NEHAYTA--LIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAML 556

Query: 283 VLKKKRKLGVAP-------------------RTND----------------YREFILGLI 307
           +++   K  V P                   R N+                Y  FI    
Sbjct: 557 LVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYC 616

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPT 364
            + R+ EA+E+   I +    +D  + N LI   G +  +D  SA      M   G  P+
Sbjct: 617 SQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLD--SAFGVLRRMFGTGCEPS 674

Query: 365 LSTLSNLSKNLC----KRNKSDEL----------VEVYKVLSANDY-------------- 396
             T S L K+L     K+  S+ +          V+   + S  D+              
Sbjct: 675 YLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECG 734

Query: 397 -FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ +Y+ +++ LC  GRL  A+ +   M+  G+ P    +NSL+ +CC+  +   A 
Sbjct: 735 CVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAV 794

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L D M       +L++Y +LI    E    E A  +F ++L  G   D   +  L++GL
Sbjct: 795 TLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGL 854

Query: 516 CQETNLQAAFEVFN 529
            +   +    E+ N
Sbjct: 855 AKTGYVDQCSELLN 868



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           ++G   + D   A   F  M  +  V    + +NL   LC+  K  E +E +  +  +  
Sbjct: 231 VLGYCRNDDVERACGVFCVMPRRNAV----SYTNLIHGLCEAGKLHEALEFWARMREDGC 286

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F  + +Y V+V  LC SGR  EA  +  EM+ +G +P+V  Y  L++  C+E  +  A K
Sbjct: 287 FPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALK 346

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + ++M   G + ++  +N LI  + + G +E A+ +   M  K V P+  TY  L+ G C
Sbjct: 347 MLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFC 406

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLG 571
           +  ++  A  + NK V   +       +T +  LC  G    A++L R     G S D  
Sbjct: 407 RGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQW 466

Query: 572 HSDSHVILLKSLADAREVEMAIEHIK 597
             ++ ++ L  +    E    +E +K
Sbjct: 467 TFNAFMVCLCRMGRVGEAHQILESLK 492


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 185/412 (44%), Gaps = 40/412 (9%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L  +  I  A K+F  M   G   + + +G  I   C    +   L    E+   
Sbjct: 166 TLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLND 225

Query: 219 ENSMI---NGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
            +  +     +VI+  +II G CK    EEA  + +E+  +  +P+ + + ++ +     
Sbjct: 226 TSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKE 285

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G V + + +L+   ++G+ P    Y   I G  +   +  AKEL   + S  +  D    
Sbjct: 286 GQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISY 345

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV--- 390
           N LI G   ++    A+  FN M+  G  P + T   L K L    K D+  E+++V   
Sbjct: 346 NMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKP 405

Query: 391 ----------------LSANDY-------FTDMESYNV---------MVSFLCTSGRLRE 418
                           L  N Y       F ++ESYN+         ++  LC +G+L  
Sbjct: 406 YAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLET 465

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ + +++  +G+ PD   Y+S++   C++  +  A  L+ +M  +GCS +L TY+IL+ 
Sbjct: 466 AWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMR 525

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            F E  ++E  ++L H M+EK V PD   Y  + + +C++   +   ++  +
Sbjct: 526 GFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQR 577



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/484 (21%), Positives = 202/484 (41%), Gaps = 36/484 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LLA LA   +      ++ +M   G+    +   + I   C   ++ + L+ +  + +
Sbjct: 95  NRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMR 154

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R    I   V    +I G C   R+ EA K+   ++   C P+ + Y  + +    +G++
Sbjct: 155 R--GYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNI 212

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
               + LK  +++      ND   ++         C        ++S    ID       
Sbjct: 213 ---NIALKWHQEM-----LNDTSPYVFN-------CRPN-----VISYSIIID------- 245

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G     +   AI  FN M+++G  P + T S L   LCK  +  +  ++ +++      
Sbjct: 246 -GLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIV 304

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y  ++   C  G L  A  +   M  KG +PDV  YN L+   C+   +  A KL
Sbjct: 305 PNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKL 364

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +++M   G   ++KT  +L+      G+++ A  LF  +    +  D       L+GLC+
Sbjct: 365 FNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCK 424

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--S 575
              +  A ++FN+  ++++ L        +  LC+ G    A +L   L  +    D  +
Sbjct: 425 NGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMA 484

Query: 576 HVILLKSLADAREVEMAIEHIKWIQES--SPTMLQEISAELFASLSSSSYPEPILLLLHA 633
           +  ++       +V+ A    + ++E+  SP ++    + L      S+  E ++ LLH 
Sbjct: 485 YSSMIHGFCKKGQVDKANILFQKMEENGCSPDLIT--YSILMRGFYESNKLEKVVQLLHR 542

Query: 634 LQEK 637
           + EK
Sbjct: 543 MIEK 546



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 149/348 (42%), Gaps = 11/348 (3%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  II  L +  N ++A  +FNE+    + + P +   + L+ +L  +G +  A K+ + 
Sbjct: 240 YSIIIDGLCKVGNWEEAICLFNEMVD--QGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEM 297

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFC 237
           M   G+  +   +   I  FC    L     +   +  +  E  +I+ +    ++I+G+C
Sbjct: 298 MIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYN----MLINGYC 353

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K  +VEEA K+ +E+      PD     ++ +   L G V + + + +  +   +     
Sbjct: 354 KTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLC 413

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
               F+ GL     I EA +L   + S    +D +    LI G   +    +A   F  +
Sbjct: 414 ICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKL 473

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            E+G  P     S++    CK+ + D+   +++ +  N    D+ +Y++++     S +L
Sbjct: 474 YEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKL 533

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +   ++  M  K + PD   Y  + +  C+++  +    L  + F  
Sbjct: 534 EKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQ 581


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 191/460 (41%), Gaps = 28/460 (6%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+ V   +G ++    +   M   G         V +   CE  +   V       R  
Sbjct: 186 ALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFR--RML 243

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           E       V     I G CK + V++AF VL+E+  R  KP+   +  + +    +G   
Sbjct: 244 ETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT- 302

Query: 279 ER--EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           ER   + LK  +     P  + Y   I G   E ++  A+ L   +V      + +    
Sbjct: 303 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTT 362

Query: 337 LIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           LIG      S D   A    N M ++G +P + T + +    CK+ K  E  +V ++ ++
Sbjct: 363 LIGGHCKGGSFD--RAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATS 420

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D  +Y ++++  C  G +  A  +   M   G  PD+  Y SL+   C++  +  
Sbjct: 421 QGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE 480

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           ++K +D+    G     +TY  +I+ + +VG    ALR+F  M++ G   D+ TY +L+ 
Sbjct: 481 SQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALIS 540

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS------ 567
           GLC+E+ L+ A  ++   ++  ++       T     CRR    +A  +L  L       
Sbjct: 541 GLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVH 600

Query: 568 ---------SDLGHSDSHVILLKSLADAREVEMAIEHIKW 598
                    S LG  D+  + LK + D    + A++H  +
Sbjct: 601 TVDVVVRKLSALGDVDAASLFLKKVLDE---DYAVDHATY 637



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 168/404 (41%), Gaps = 8/404 (1%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM- 180
           Y   I  L + +  ++AF V  E+             +L+  L   G+ + A ++F ++ 
Sbjct: 254 YTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLI 313

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
                + +   + V I  +C   KL +   +L  VR  E  +   +     +I G CKG 
Sbjct: 314 KSSSYKPNVHTYTVMIGGYCREGKLARAEMLL--VRMVEQGLKPNTNTYTTLIGGHCKGG 371

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
             + AF+++++++     P+   Y  V + F   G + E   VL+     G+      Y 
Sbjct: 372 SFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYT 431

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEK 359
             I     +  I  A +L + +V      D +   +LI +         +  FF+  +  
Sbjct: 432 ILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMI 491

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +PT  T +++    CK  +S   + V++ +  N  F D  +Y  ++S LC   RL EA
Sbjct: 492 GLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA 551

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + + M  K L P      +L    CR +    A  + D++        + T ++++ K
Sbjct: 552 KALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVVVRK 608

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            S +G+++ A      +L++  A D  TYT  +   C E N  A
Sbjct: 609 LSALGDVDAASLFLKKVLDEDYAVDHATYTGFINS-CYENNRYA 651



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 36/252 (14%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M   G  P   +   L    C+  K +E+  +   +    +  D  +  V+V  LC 
Sbjct: 169 FDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCE 228

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            GR ++     + M   G  P+V  Y + ++  C+   ++ A  + ++M   G   N+ T
Sbjct: 229 KGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 288

Query: 473 YNILISKFSEVGEIEGALRLF-------------HN-----------------------M 496
           +  LI    ++G  E A RLF             H                        M
Sbjct: 289 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 348

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +E+G+ P+  TYT+L+ G C+  +   AFE+ NK      +      +  +   C++G  
Sbjct: 349 VEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 408

Query: 557 LVATKLLRGLSS 568
             A K+LR  +S
Sbjct: 409 QEAYKVLRMATS 420



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 69/155 (44%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           +E+ N ++     +G    A  V   M R G+ PD   + +L+  CCRE  +     L  
Sbjct: 146 VETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLA 205

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M+  G S +  T  +++    E G  +     F  MLE G  P+   YT+ ++GLC+  
Sbjct: 206 AMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRR 265

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            ++ AF V  + V   +       +T +  LC+ G
Sbjct: 266 YVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIG 300


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/571 (22%), Positives = 246/571 (43%), Gaps = 55/571 (9%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
            F+W  +Q  + HS  +Y+  L +L+ +          +Q++      D   Y  ++  L
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-----IDNALKMFDEMSHRG 184
            +     KA  +  +++    + G ++ N +   +  DG      +D+AL++F  MS  G
Sbjct: 84  CKAGELDKAKELLGQLR----ESGVKL-NVITYSVVIDGCCKASRVDDALEIFKTMSAGG 138

Query: 185 -VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGKR 241
                 + F   +   C   ++ +   + + + K   E ++I+ S +    + G CK  R
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTL----LDGLCKAGR 194

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-----REVVLKKKRKLGVAPRT 296
           ++EA ++ +E+  + C PD +AY            V E     R++V K  +   VA  T
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 297 NDYREFILGLIVER------------RIC------EAKELGEVIVSGKFTIDDDVLNALI 338
                 ++G++ ++             +C      EA +  E ++S       ++ N LI
Sbjct: 255 ------VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308

Query: 339 GSV--SSIDPRSAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +V  S   P   ++F     M E    P L T + +  NLCK  + DE  E+   ++  
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y+ +V  LC  G+L  A  +++EM ++G+ PD     S++ A  +   +  A
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
               + M A G + +L TYN L+    + G I+ A+     M+     PD  +YT ++  
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           LC+      A  +F + V   V+    +  + +  L R G   +A +LL+   + L   D
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLK---TSLCKPD 545

Query: 575 --SHVILLKSLADAREVEMAIEHIKWIQESS 603
              H +++  L  A + E A E ++ + ++ 
Sbjct: 546 FVMHKMVVDGLCKAGKAEDACEVVERMADAG 576



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 45/246 (18%), Positives = 101/246 (41%), Gaps = 7/246 (2%)

Query: 75  SQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           ++  N+  SP  ++Y +++  L    +++    +L+++    +  DS     I+ +L + 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
                A S    +K           N+LL  L   G ID A+    +M           +
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
            + I   C + +     ++  E+ KR   ++  +V+   ++ G  +    + A ++L   
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKR--GVLPDTVLYHSLLDGLARNGLEDLALELL--- 537

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           +   CKPDF+ +++V +     G   +   V+++    G       Y   + GL    ++
Sbjct: 538 KTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKV 597

Query: 313 CEAKEL 318
            +A++L
Sbjct: 598 DKARQL 603


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 220/508 (43%), Gaps = 20/508 (3%)

Query: 32  PLLEQTLHQLG--LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           P LE  L + G  +R  L   +++R  +       +L   FF WAS+QP + HS   Y +
Sbjct: 115 PKLELALQESGVIMRSGLPERVLSRCGDA-----GNLGYRFFVWASKQPGYRHSYEVYKA 169

Query: 90  ILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KF 147
           ++K+L   RQ  A+ ++++++ K N   L   V+  ++      +  +KA  V +E+ K+
Sbjct: 170 MIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKY 229

Query: 148 NCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            CE   P+  +   LL  L  +G +  A  +F++M  R    +   F   ++ +C   K+
Sbjct: 230 GCE---PDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLYGWCREGKI 285

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +L  V+ +E       V+   ++ G+ +  ++ +AF +L E++   C P+  ++ 
Sbjct: 286 MEAKHVL--VQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFT 343

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVS 324
           I+ + F     + E   +  + +  G       Y   I G        +A E L ++I  
Sbjct: 344 ILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQK 403

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           G        L  ++      +    +     M + G VP L+  + + + +CK     E 
Sbjct: 404 GHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEA 463

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSLM 442
           V ++  + A      +++Y +MV    + G L EA    +EM  +GL   P       L 
Sbjct: 464 VRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELT 523

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  R + L  AK +W  M   GC  N+  + I I      G ++ A     +M++  + 
Sbjct: 524 NALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLM 583

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNK 530
           P   T+  L+ GL +  + Q A E+  K
Sbjct: 584 PQPDTFAKLMRGLKKLFHRQLAVEITEK 611



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 161/340 (47%), Gaps = 9/340 (2%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V ++++E+RK    M+   V  VL+   F   + V++A +VLDE+    C+PD   
Sbjct: 179 QFGAVWALIEEMRKENPYMLTPEVFIVLM-RRFASVRMVKKAVEVLDEMPKYGCEPDEYV 237

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   + +  R +   P    +   + G   E +I EAK +   I 
Sbjct: 238 FGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIK 296

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCKRN 379
              F  D  V N L+G  +     R A   F+ + E  +V   P  ++ + L ++ CK  
Sbjct: 297 EAGFEPDIVVYNNLLGGYAQAGKMRDA---FDLLAEMKKVNCGPNAASFTILIQSFCKTE 353

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K DE + ++  +  +    D+ +Y  ++S  C  G   +AY ++ +M +KG DP    Y 
Sbjct: 354 KMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYL 413

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M A  +++ L    +L ++M   GC  +L  YN +I    ++G+++ A+RL+  M   
Sbjct: 414 CIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAG 473

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           G+ P   TY  ++ G   +  L  A + F + V   ++ A
Sbjct: 474 GLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSA 513



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 97/200 (48%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L   ++L    C+  K  E   V   +    +  D+  YN ++     +G++R+A+ +
Sbjct: 267 PNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDL 326

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EMK+    P+ + +  L+++ C+ + +  A +++ +M  SGC  ++ TY  LIS F +
Sbjct: 327 LAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCK 386

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G  + A  +  +M++KG  P   +Y  ++    ++  L+   E+  +      +   +I
Sbjct: 387 WGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNI 446

Query: 543 LSTFMISLCRRGHFLVATKL 562
            +T +  +C+ G    A +L
Sbjct: 447 YNTMIRLVCKLGDLKEAVRL 466


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 7/408 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A +   G   +A+++FDEM+ R V  + I +   I    +   L     + D++  
Sbjct: 204 NVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVC 263

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + +   ++   +++ G C+  R+ E   +LDE+  ++  PD   Y I+ +     G  
Sbjct: 264 --HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 321

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                +  K  K GV     DY   IL  GL  + ++  A+E+ + +V+        + N
Sbjct: 322 KAMLSLFGKYLKNGVT--IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 379

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   + +   A   F  M  +   P   T + L   LCK  +     ++   +  N
Sbjct: 380 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 439

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +E++N ++     +G+L + + V+ EM+  GL P+V  Y S++ A C+   +  A
Sbjct: 440 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 499

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D MF      N + YN +I  + E G  + A  L   M   G++P   TY  L++G
Sbjct: 500 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           LC ++ +  A E+ N   NH ++      +T + + C RG+   A  L
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 607



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 194/461 (42%), Gaps = 14/461 (3%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNF-----------THSPLSYHSILKSLSLSRQ 99
           +  R + P  +T++++  G       +  F             + ++Y+ +L  L  + +
Sbjct: 226 MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGR 285

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           +    ++L ++   K+  D   Y  +   L +  +++   S+F +   N   IG   C+ 
Sbjct: 286 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 345

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L  DG +  A ++   + + G+  + + +   I  +C+  +L    S   +++ R 
Sbjct: 346 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 405

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    +    +I+G CK +R+  A  +L E++     P    +  + + +   G + +
Sbjct: 406 --IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 463

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +VL + ++ G+ P    Y   +       +I EA  + + +       +  V NA+I 
Sbjct: 464 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 523

Query: 340 SVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +     P   A +    M   G  P++ T + L K LC +++  E  E+   LS +    
Sbjct: 524 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 583

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SYN ++S  C  G + +A  + Q M + G+   V  Y+ L+        L   + L+
Sbjct: 584 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 643

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M  +    +   +NI++  +S+ G    A  L   ML+K
Sbjct: 644 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 684



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/445 (20%), Positives = 179/445 (40%), Gaps = 7/445 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            Y  +I   I+G + +  F + +++   C  + P     N LL+ L   G +     + D
Sbjct: 237 TYNTMIDGHIKGGDLEAGFRLRDQMV--CHGLKPNAITYNVLLSGLCRAGRMGETSALLD 294

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM+ + +      + +       N     +LS+  +  K  N +  G     ++++G CK
Sbjct: 295 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCK 352

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +V  A +VL  L      P  + Y  +   +   G +        + +   + P    
Sbjct: 353 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 412

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   I GL    RI  A++L   +         +  N LI +           +  + M 
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 472

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E G  P + +  ++    CK  K  E V +   +   D   + + YN ++      G   
Sbjct: 473 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+ ++++MK  G+ P +  YN L++  C +  +  A+++ + +       +  +YN LI
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           S     G I+ AL L   M + G+     TY  L+ GL     L     ++ K + ++V+
Sbjct: 593 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 652

Query: 538 LARSILSTFMISLCRRGHFLVATKL 562
            + +I +  + +  + G+ + A  L
Sbjct: 653 PSNAIHNIMVEAYSKYGNEIKAEDL 677



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYNV+++ +  +GR  +A  V  EM  + + P+   YN++++   +   L    +L DQM
Sbjct: 202 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 261

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N  TYN+L+S     G +     L   M  + + PD  TY+ L +GL +  + 
Sbjct: 262 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 321

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +A   +F K + + V +     S  +  LC+ G   +A ++L+ L
Sbjct: 322 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 366



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 4/154 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG-NLKTYN 474
           +R A+G++      G  PD   +N  ++AC     L  A  +  +M   G    N  +YN
Sbjct: 148 VRRAFGILAS---AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 204

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ++I+     G    A+ +F  M E+ V P+  TY ++++G  +  +L+A F + ++ V H
Sbjct: 205 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 264

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +       +  +  LCR G     + LL  ++S
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS 298


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/480 (22%), Positives = 205/480 (42%), Gaps = 39/480 (8%)

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           ++K + +  D   Y  ++  L +     +A  +F +++   +       N+++    S  
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
             D+A K+ + +  RG   S + F   +    +  K+ + L++ D ++K     I+   I
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNI 390

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              II   C   RV EA+K+ DE+ +    P+ ++  I+ +       + E   + +   
Sbjct: 391 ---IIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESAS 447

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---------- 338
           + G  P +  Y   I GL  + +I +A  L E ++      +  +  +LI          
Sbjct: 448 ERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKE 507

Query: 339 ---------------GSVSSIDPRSAIVFFNFMIEKGR-----------VPTLSTLSNLS 372
                            ++ ++     VF    +EKGR           +P + + S L 
Sbjct: 508 DGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILI 567

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L K  ++ E   +++ +S   +  D  +YN +V  LC SG++ +AY V++EMK K + 
Sbjct: 568 HGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVH 627

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P V+ Y S+++   + D L  A  L+++  + G   N+  Y+ LI  F +VG I+ A  +
Sbjct: 628 PTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLI 687

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M++KG+ P+  T+ SL++ L +   +  A   F               S  +  LCR
Sbjct: 688 LEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCR 747



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/517 (21%), Positives = 233/517 (45%), Gaps = 34/517 (6%)

Query: 33  LLEQTLH-QLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSIL 91
           +LE+  H   GL +    +LVA ++    L      +G       +P F+    +Y  ++
Sbjct: 128 VLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFS----AYTVLI 183

Query: 92  KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151
            +L+ +RQ      +L+Q++     +   ++  ++ +L +    + A ++ +EVK +C +
Sbjct: 184 GALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLE 243

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
               + N  +      G +D A K F E+   G+    + +   +W  C+  +LG+   +
Sbjct: 244 PDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEEL 303

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY------- 264
             ++    +  +  +     +I G+   +R ++A+K+L+ LR R C P  +++       
Sbjct: 304 FGQMEAERD--VPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCL 361

Query: 265 ---RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GE 320
              R V E   L         V+KK  K    P  + Y   I  L +  R+ EA ++  E
Sbjct: 362 GKKRKVDEALTLFD-------VMKKDAK----PNISTYNIIIDMLCMAGRVNEAYKIRDE 410

Query: 321 VIVSGKFT--IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + ++G F   +  +++   +   + ++    I  F    E+G  P   T  +L   L K+
Sbjct: 411 MELAGLFPNLLSVNIMVDRLCKANQLEEAHRI--FESASERGCNPNSVTYCSLIDGLGKK 468

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K D+   +++ +    +  +   Y  ++      GR  + + + +EM R+G  PD++  
Sbjct: 469 GKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLL 528

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N+ M+   +   +   + +++ M + G   ++++Y+ILI   ++ G+      +F  M +
Sbjct: 529 NTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQ 588

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVNH 534
           +G A DA  Y ++++GLC+   +  A+EV  +  V H
Sbjct: 589 QGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKH 625



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 200/458 (43%), Gaps = 22/458 (4%)

Query: 83  SPLSYHSILKSLSLSRQINA----IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           S +S++SIL  L   R+++      D + K  K N      S Y  II  L       +A
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPN-----ISTYNIIIDMLCMAGRVNEA 404

Query: 139 FSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           + + +E++     + P +   N ++  L     ++ A ++F+  S RG   +++ +   I
Sbjct: 405 YKIRDEMEL--AGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLI 462

Query: 197 WKFCENAKLGQVLSMLD---EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
               +  K+     + +   +     N +I  S+I    +HG     R E+  K+  E+ 
Sbjct: 463 DGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHG-----RKEDGHKIYKEMI 517

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            R  +PD        +     G V +   + +  +  G  P    Y   I GL    +  
Sbjct: 518 RRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQAR 577

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           E   + + +    F +D    NA++ G   S     A      M  K   PT++T  ++ 
Sbjct: 578 ETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIV 637

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L K ++ DE   +++   +     ++  Y+ ++      GR+ EAY +++EM +KGL 
Sbjct: 638 DGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 697

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  +NSLM+A  + + +  A   +  M    CS N  TY+ILI+    V +   A   
Sbjct: 698 PNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 757

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +  M ++G+ P+  TYT+++ GL +  N+  A+ +F +
Sbjct: 758 WQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFER 795



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/459 (21%), Positives = 178/459 (38%), Gaps = 60/459 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           LS + ++  L  + Q+     + +         +S  Y  +I  L +      A+ +F +
Sbjct: 421 LSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEK 480

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF---IWKFCE 201
           +     D  P I  SL+      G  ++  K++ EM  RG          +   ++K  E
Sbjct: 481 MLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGE 540

Query: 202 NAKLGQVL------SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
             K   +         L +VR              ++IHG  K  +  E   +   +  +
Sbjct: 541 VEKGRAIFEDMKSFGFLPDVRSYS-----------ILIHGLTKAGQARETSNIFQAMSQQ 589

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
               D  AY  V +     G V +   VL++ +   V P    Y   + GL    R+ EA
Sbjct: 590 GFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEA 649

Query: 316 KELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
             L E   S    ++  + ++LI   G V  ID   A +    M++KG  P + T ++L 
Sbjct: 650 YMLFEEAKSKGIELNVILYSSLIDGFGKVGRID--EAYLILEEMMKKGLTPNVYTWNSLM 707

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L K  + DE +  ++ +       +  +Y+++++ LC   +  +A+   QEM+++GL 
Sbjct: 708 DALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLI 767

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P                                   N+ TY  +IS  ++VG I  A  L
Sbjct: 768 P-----------------------------------NVVTYTTMISGLAKVGNITDAYSL 792

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           F      G  PD+ ++ +L+EG+        A++VF ++
Sbjct: 793 FERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEET 831



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 5/191 (2%)

Query: 380 KSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +S  L + ++V+ A  +        +Y V++  L  + +   A  ++++M+  G +  V 
Sbjct: 153 RSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVP 212

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            + +L+ A  RE  + PA  L D++  S    ++  YN+ I  F + G ++ A + FH +
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL 272

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVNHDVMLARSILSTFMISLCRRGH 555
              G+ PD  +YTS++  LC+   L  A E+F +     DV  A +  +T ++       
Sbjct: 273 KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYA-YNTMIMGYGSAER 331

Query: 556 FLVATKLLRGL 566
           F  A KLL  L
Sbjct: 332 FDDAYKLLERL 342



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 134/323 (41%), Gaps = 20/323 (6%)

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           E VL++   LG           +  L+  RR+ +A  +   +   KF         LIG+
Sbjct: 126 EKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGA 185

Query: 341 VSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
           ++    P  A+     M + G   ++   + L + L +  + +  + +   +  +    D
Sbjct: 186 LAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPD 245

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           +  YNV +     +G +  A+    E+K  GL PD   Y S++   C+   L  A++L+ 
Sbjct: 246 IVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFG 305

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           QM A         YN +I  +      + A +L   + E+G  P   ++ S+L  L ++ 
Sbjct: 306 QMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 365

Query: 520 NLQAAFEVFNKSVNHDVML--ARSILSTFMI---SLCRRGHFLVATKL-----LRGLSSD 569
            +  A  +F      DVM   A+  +ST+ I    LC  G    A K+     L GL  +
Sbjct: 366 KVDEALTLF------DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419

Query: 570 LGHSDSHVILLKSLADAREVEMA 592
           L   +   I++  L  A ++E A
Sbjct: 420 LLSVN---IMVDRLCKANQLEEA 439



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/250 (18%), Positives = 112/250 (44%), Gaps = 3/250 (1%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F   SQQ  F     +Y++++  L  S +++    VL+++KV  +    + Y  I+  L 
Sbjct: 583 FQAMSQQ-GFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLA 641

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           +     +A+ +F E K    ++   + +SL+      G ID A  + +EM  +G+  +  
Sbjct: 642 KIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 701

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            +   +    +  ++ + L     +++ + S    +    ++I+G C+ ++  +AF    
Sbjct: 702 TWNSLMDALVKTEEIDEALICFQSMKEMKCS--PNTYTYSILINGLCRVQKYNKAFVFWQ 759

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E++ +   P+ + Y  +      +G++ +   + ++ +  G  P +  +   I G+    
Sbjct: 760 EMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNAN 819

Query: 311 RICEAKELGE 320
           R  EA ++ E
Sbjct: 820 RPMEAYQVFE 829


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/582 (22%), Positives = 239/582 (41%), Gaps = 95/582 (16%)

Query: 3   MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVIN--PYL 60
           M P T          IS + +  P +     L++ L       SL+P+ +  +IN  P+ 
Sbjct: 27  MTPPTSHCHDPILTTISEAIKVSPTKPLHSSLKRIL------PSLTPNHLIDLINLNPHS 80

Query: 61  LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           L+  SL L FF W S Q +F  S  SY ++   L   + ++   S+L+ V   K    +S
Sbjct: 81  LSPPSL-LSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSAS 139

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
               +  S+++ + T ++  VF+                L+      GY  +A++ F  +
Sbjct: 140 S---VFTSVLEARGTHQSNLVFS---------------VLMNAYTDSGYFSDAIQCFRLV 181

Query: 181 SHRGVE--FSTIGFGVF-----------IWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
               ++  F + G+ +F            W F E         +LD     +    N   
Sbjct: 182 RKHNLQIPFHSCGY-LFDRLMKLNLTSPAWAFYE--------EILDCGYPPDVCKFN--- 229

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVL 284
              +++H  CK  ++ EA  +  E+  R  +P  +++  +   +   G++   F  +  +
Sbjct: 230 ---VLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFM 286

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            + R   V P    Y   I GL  E ++ +A +L                          
Sbjct: 287 MENR---VFPDVFTYSVLINGLCKEGQLDDANKL-------------------------- 317

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                   F  M ++G VP   T + L    C   ++D  +E+Y+ +       D+ +YN
Sbjct: 318 --------FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYN 369

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++ LC  G LREA  ++ EM ++GL PD   Y  L++ CC+E  L  A ++  +M   
Sbjct: 370 TLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE 429

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +   +  LIS F   G++  A R    MLE G+ PD  TYT ++ G C++ +++  
Sbjct: 430 GIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTG 489

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           F++  +      +      +  +  LC++G    A  LL  +
Sbjct: 490 FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAM 531



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVL--NALI-GSVSSIDP 346
           G  P    +   +  L  E +I EA+ L GE+   GK  +   V+  N LI G   S + 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI---GKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                   FM+E    P + T S L   LCK  + D+  +++  +       +  ++  +
Sbjct: 277 DQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTL 336

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C +GR      + Q+M RKG+ PDV  YN+L+   C+   LR AKKL  +M   G 
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TY +LI    + G++E AL +   M+++G+  D   +T+L+ G C+E  +  A  
Sbjct: 397 KPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAER 456

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
              + +   +    +  +  +   C++G      KLL+ +  D GH    V   +LL  L
Sbjct: 457 TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCD-GHVPGVVTYNVLLNGL 515

Query: 584 ADAREVEMA 592
               +++ A
Sbjct: 516 CKQGQMKNA 524


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/582 (22%), Positives = 239/582 (41%), Gaps = 95/582 (16%)

Query: 3   MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVIN--PYL 60
           M P T          IS + +  P +     L++ L       SL+P+ +  +IN  P+ 
Sbjct: 27  MTPPTSHCHDPILTTISEAIKVSPTKPLHSSLKRIL------PSLTPNHLIDLINLNPHS 80

Query: 61  LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           L+  SL L FF W S Q +F  S  SY ++   L   + ++   S+L+ V   K    +S
Sbjct: 81  LSPPSL-LSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSAS 139

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
               +  S+++ + T ++  VF+                L+      GY  +A++ F  +
Sbjct: 140 S---VFTSVLEARGTHQSNLVFS---------------VLMNAYTDSGYFSDAIQCFRLV 181

Query: 181 SHRGVE--FSTIGFGVF-----------IWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
               ++  F + G+ +F            W F E         +LD     +    N   
Sbjct: 182 RKHNLQIPFHSCGY-LFDRLMKLNLTSPAWAFYE--------EILDCGYPPDVCKFN--- 229

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVL 284
              +++H  CK  ++ EA  +  E+  R  +P  +++  +   +   G++   F  +  +
Sbjct: 230 ---VLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFM 286

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            + R   V P    Y   I GL  E ++ +A +L                          
Sbjct: 287 MENR---VFPDVFTYSVLINGLCKEGQLDDANKL-------------------------- 317

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                   F  M ++G VP   T + L    C   ++D  +E+Y+ +       D+ +YN
Sbjct: 318 --------FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYN 369

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            +++ LC  G LREA  ++ EM ++GL PD   Y  L++ CC+E  L  A ++  +M   
Sbjct: 370 TLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE 429

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +   +  LIS F   G++  A R    MLE G+ PD  TYT ++ G C++ +++  
Sbjct: 430 GIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTG 489

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           F++  +      +      +  +  LC++G    A  LL  +
Sbjct: 490 FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAM 531



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVL--NALI-GSVSSIDP 346
           G  P    +   +  L  E +I EA+ L GE+   GK  +   V+  N LI G   S + 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI---GKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                   FM+E    P + T S L   LCK  + D+  +++  +       +  ++  +
Sbjct: 277 DQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTL 336

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C +GR      + Q+M RKG+ PDV  YN+L+   C+   LR AKKL  +M   G 
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TY +LI    + G++E AL +   M+++G+  D   +T+L+ G C+E  +  A  
Sbjct: 397 KPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAER 456

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSL 583
              + +   +    +  +  +   C++G      KLL+ +  D GH    V   +LL  L
Sbjct: 457 TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCD-GHVPGVVTYNVLLNGL 515

Query: 584 ADAREVEMA 592
               +++ A
Sbjct: 516 CKQGQMKNA 524


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 221/484 (45%), Gaps = 32/484 (6%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           ++ SL++    QK    F+ V   C+ + P++    + +      G ++ A+++F +M  
Sbjct: 224 LLTSLVRATEFQKCCEAFHVV---CKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEE 280

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFCKGK 240
            GV  + + +   I     + +  +     +++ +R  E ++I  S++    + G  K K
Sbjct: 281 AGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSIL----VKGLTKAK 336

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+ +A+ VL E+  +   P+ I Y  + +     GS+ +   +       G++  ++ Y 
Sbjct: 337 RIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 396

Query: 301 EFILGL-------IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
             I G        I ER + E   +G  +  G FT     +  L+ S    D  SA+ F 
Sbjct: 397 TLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFT----SVICLLCSHHMFD--SALRFV 450

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M+ +   P    L+ L   LCK  K  + VE++       +  D ++ N ++  LC +
Sbjct: 451 GEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEA 510

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+L E + + +E+  +G   D   YN+L+  CC    L  A    D+M   G   +  TY
Sbjct: 511 GKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTY 570

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           +ILI     + ++E A++ + +    G+ PD  TY+ +++G C+    +   ++F++ ++
Sbjct: 571 SILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMS 630

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADARE 588
           +++     + +  + + CR G   +A +L      +G+S +   S ++  L+K ++    
Sbjct: 631 NNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPN---SATYTSLIKGMSIISR 687

Query: 589 VEMA 592
           VE A
Sbjct: 688 VEEA 691



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 210/486 (43%), Gaps = 15/486 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  L +S + +      +++    +      Y  ++  L + K    A+ V  E
Sbjct: 288 VTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKE 347

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +          + N+L+  L   G ++ A+++ D M  +G+  ++  +   I  +C++ +
Sbjct: 348 MTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQ 407

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF-IA 263
                 +L E+     ++  GS  +V+ +   C     + A + + E+ +R   P   + 
Sbjct: 408 ADIAERLLKEMLSIGFNVNQGSFTSVICL--LCSHHMFDSALRFVGEMLLRNMSPGGGLL 465

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             +++   K        E+ LK   K G    T      + GL    ++ E   + + I+
Sbjct: 466 TTLISGLCKHGKHSKAVELWLKFLNK-GFLVDTKTSNALLHGLCEAGKLEEGFRIQKEIL 524

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F +D    N LI G   +     A +F + M++KG  P   T S L + L   NK +
Sbjct: 525 GRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVE 584

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E ++ +     N    D+ +Y+VM+   C + R  E   +  EM    L P+   YN L+
Sbjct: 585 EAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLI 644

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A CR   L  A +L + M   G S N  TY  LI   S +  +E A  L   M  +G+ 
Sbjct: 645 GAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLE 704

Query: 503 PDATTYTSLLEG---LCQETNLQAAF-EVFNKSVNHDVMLARSILSTFMI-SLCRRGHFL 557
           P+   YT+L++G   L Q   ++    E+ +K+V+ +      I  T MI    R G+  
Sbjct: 705 PNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN-----KITYTVMIGGYARDGNVT 759

Query: 558 VATKLL 563
            A++LL
Sbjct: 760 EASRLL 765



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/483 (22%), Positives = 206/483 (42%), Gaps = 13/483 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++K L+ +++I     VLK++       +  VY  +I SLI+  +  KA  + + 
Sbjct: 323 ITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDL 382

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +     N+L+      G  D A ++  EM   G   +   F   I   C +  
Sbjct: 383 MVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHM 442

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK----GKRVEEAFKVLDELRIRECKPD 260
               L  + E+  R  +M  G  +   +I G CK     K VE   K L++  + + K  
Sbjct: 443 FDSALRFVGEMLLR--NMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTS 500

Query: 261 FIAYRIVAEEFKLM-GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
                 + E  KL  G   ++E++ +     G       Y   I G    +++ EA    
Sbjct: 501 NALLHGLCEAGKLEEGFRIQKEILGR-----GFVMDRVSYNTLISGCCGNKKLDEAFMFM 555

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + +V      D+   + LI  + +++    AI F+      G +P + T S +    CK 
Sbjct: 556 DEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKA 615

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            +++E  +++  + +N+   +   YN ++   C SGRL  A  + ++MK KG+ P+ + Y
Sbjct: 616 ERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATY 675

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
            SL++       +  AK L ++M   G   N+  Y  LI  + ++G++     L   M  
Sbjct: 676 TSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS 735

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
           K V P+  TYT ++ G  ++ N+  A  + ++     ++        F+    ++G  L 
Sbjct: 736 KNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQ 795

Query: 559 ATK 561
           A K
Sbjct: 796 AFK 798


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 218/505 (43%), Gaps = 12/505 (2%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
            P LE  L + G+  ++   L  RV+N       +L   FF WAS+QP + HS   Y ++
Sbjct: 105 VPKLELALQESGV--AVRSGLTERVLN-RCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 161

Query: 91  LKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFN 148
           +K L   RQ  A+ +++++++  N   +   V+  ++      +  +KA  V +E+ K+ 
Sbjct: 162 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 221

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           CE     +   LL  L  +G +  A  +F++M  R    +   F   ++ +C   KL + 
Sbjct: 222 CEP-DEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTP-TLKHFTSLLYGWCREGKLMEA 279

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             +L  V+ RE       V+   ++ G+    ++ +A+ +L E+R +EC+P+ +++  + 
Sbjct: 280 KYVL--VQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLI 337

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
           +       + E   V  + +  G       Y   I G     +I +  EL   +I  G  
Sbjct: 338 QALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHI 397

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 L+ +       +    I     M + G  P L+  + + +  CK  +  E V V
Sbjct: 398 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 457

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSLMEAC 445
           +  + A      ++++ +M+    +   L EA    +EM  +GL   P       L+ + 
Sbjct: 458 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 517

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            R + L  +K +W  +   GC  N+  + I I      G ++ A     +M++ GV P  
Sbjct: 518 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQP 577

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            T+  L+ GL +  N Q A E+  K
Sbjct: 578 DTFAKLMRGLRKLYNRQIAAEITEK 602



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V ++++E+R REN       + V+++  F   + V++A +VLDE+    C+PD   
Sbjct: 170 QFGAVWALIEEMR-RENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHV 228

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   + +  R +   P    +   + G   E ++ EAK +   I 
Sbjct: 229 FGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR 287

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F  D  V N L+ G  ++     A      M  K   P + + + L + LC + K +
Sbjct: 288 EAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKME 347

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + V+  + +     D  +Y  ++S  C  G++ + Y ++  M ++G  P+   Y  +M
Sbjct: 348 EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIM 407

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  +++ L    +L ++M   GC+ +L  YNI+I    ++GEI+  +R+++ M   G++
Sbjct: 408 AAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLS 467

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           P   T+  ++ G   +  L  A E F + V   ++ A
Sbjct: 468 PGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSA 504



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 8/241 (3%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL   ++L    C+  K  E   V   +    +  D+  YN +++    +G++ +AY 
Sbjct: 257 TPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYD 316

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++EM+RK  +P+V  + +L++A C +  +  A +++ +M + GC  +  TY  LIS F 
Sbjct: 317 LLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFC 376

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G+I     L  NM+++G  P+  TY  ++    ++  L+   E+  +          +
Sbjct: 377 KWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLN 436

Query: 542 ILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
           I +  +   C+ G      ++       GLS  L   D+ VI++      R +  A E  
Sbjct: 437 IYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGL---DTFVIMIHGFLSQRCLVEACEFF 493

Query: 597 K 597
           K
Sbjct: 494 K 494


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 218/513 (42%), Gaps = 14/513 (2%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           +++L  L  +R+ +    + K+V       ++  Y  +I    +G    +A SVF+++K 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           +         N+LL  L   G + +ALK+F EM       ++    + +  F    ++  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFC----KGKRVEEAFKVLDELRIRECKPDFIA 263
            L+ L ++RK  +S+  G+    L++ G C       R+E+A +   E++    +PD  +
Sbjct: 121 ALAHLQDMRKSSSSVATGTY--NLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLES 178

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y I+       G + E   +      +  +P    Y   + G     +  EA+ L + I+
Sbjct: 179 YHILLSALSDSGRMAEAHALFSA---MTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 235

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              +  +    + +I     +D    A   F  MIE   VP   T + L    CK    +
Sbjct: 236 KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLE 295

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           + ++++  +        + +YN ++  LC   G +  A  +  +++  GL P +  YNSL
Sbjct: 296 DAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSL 355

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C    L  A + +D+M    C+ N+ TY+ILI    +V  ++ A +   +M   G 
Sbjct: 356 IQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGY 414

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P   TY  L+ G C+   L++A   F K           I +T +  LC+        +
Sbjct: 415 TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLR 474

Query: 562 LLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
           LL  + ++    D  ++  L+  L  A  VE A
Sbjct: 475 LLCHMHAEGCKPDVITYNCLISGLCSANRVEDA 507



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 203/494 (41%), Gaps = 66/494 (13%)

Query: 57  NPYLLT---HHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSL-SRQIN 101
            P+L T   H+ L  GFF     +    H           +  +Y+ +LK L   ++  N
Sbjct: 96  GPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSAN 155

Query: 102 AIDSVL---KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC- 157
            ++  +   K++K + +  D   Y  ++ +L       +A ++F+ +        P+I  
Sbjct: 156 RLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT-----CSPDIMT 210

Query: 158 -NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            N L+      G    A  +  E+   G E +   + + I  +C+  K+ +   +   ++
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF--MK 268

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF-KLMG 275
             E++ +  +V    +I GFCK   +E+A K+  E+    CK   + Y  + +   K  G
Sbjct: 269 MIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRG 328

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V+    +  K    G+ P    Y   I G       C+A+ L E               
Sbjct: 329 GVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF------CDARRLSE--------------- 367

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        A+ +F+ M E    P + T S L   LCK  +  E  +  + + A+ 
Sbjct: 368 -------------AMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y   + +Y  +++  C  G L+ A    ++MK  G  P+   +N+L++  C+ +      
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGL 473

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L   M A GC  ++ TYN LIS       +E A RLF  M     AP+ TT+  L+ GL
Sbjct: 474 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGL 530

Query: 516 CQETNLQAAFEVFN 529
           C +  ++ A  + +
Sbjct: 531 CAQKKVEEARNILD 544



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N L+S      + + ALRLF  +L    AP+A TY  L+ G C+   +  A  VF+   +
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEM 591
             ++   S ++T ++ LC  G    A KL R + +   L  S SH ILL+    A  V  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 592 AIEHIKWIQESSPTM 606
           A+ H++ +++SS ++
Sbjct: 121 ALAHLQDMRKSSSSV 135


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 129/555 (23%), Positives = 230/555 (41%), Gaps = 56/555 (10%)

Query: 65  SLALGFFNWASQQPNFT--------HSPLSYHSILKSLSLSRQI--NAIDSV---LKQVK 111
           SL L F +WA  Q  F+        H    Y     + SL+ ++  N +D     L Q  
Sbjct: 62  SLVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 112 VN---KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASD 167
            N   +    S+V+  ++ S  +     KA S+ N  K      G    N++L AV+ + 
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK 181

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
             +  A  +F EM   GV  +   + + I  FC    L   L    E+ +  N  +   V
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMER--NGCLPNVV 239

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               II  +CK +++ EAFK+L  + ++   P+ I+Y +V       G + E   +L++ 
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DP 346
            K    P    +   I G        +A  L   +V    + +      LI S+    + 
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+ F + M ++G  P   T + L     ++    +  ++ K +  N +   + +YN +
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 407 VSFLCTSGRLREAYGVIQEMKR-----------------------------------KGL 431
           ++  C  GR+ +A G++QEM                                     KG+
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI 479

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV+ Y+SL++  C++  L     L+ +M + G   +  TY  LI+ +   G+++ ALR
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M++KG +PD  TY  L+ G  +++  + A  +  K + ++  +   I    +I  C
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL-YEESVPNEITYNTLIDNC 598

Query: 552 RRGHFLVATKLLRGL 566
               F  A  L++G 
Sbjct: 599 NNLEFKSALALMKGF 613



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 131/603 (21%), Positives = 242/603 (40%), Gaps = 103/603 (17%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ-INAIDSVLKQVKVNKITLDSSVYRFI 125
           AL   N A +   F    LSY++IL ++  ++Q +   + + K++  + ++ +   Y  +
Sbjct: 151 ALSIVNLA-KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNIL 209

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
           I       N +     F E++ N         N+++        I  A K+   M+ +G+
Sbjct: 210 IRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMINGS----------- 226
             + I + V I   C   ++ +   +L+E+ KR         N++ING            
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329

Query: 227 --------------VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                         V    +I+  CK   +  A + LD++R R   P+   Y  + + F 
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G + +   ++K+  + G  P    Y   I G  +  R+ +A  L + ++   F  D  
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449

Query: 333 VLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             + +I G   + +   A      M+ KG  P ++T S+L + LCK+ +  E+ ++++ +
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN------------ 439
            +     D  +Y  +++  C  G L +A  +  EM +KG  PD+  YN            
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRT 569

Query: 440 --------------------------------------SLMEACCREDLLRPAKKLWDQM 461
                                                 +LM+  C + L+  A ++ + M
Sbjct: 570 KEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESM 629

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N + YN++I   S+VG IE A  L+  ML  G AP + T  +L + L  E   
Sbjct: 630 LQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHE--- 686

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
                   K V  + +L  ++ S      CR     +A K+L G++S  G+ D+   +LK
Sbjct: 687 -------GKEVELNQLLDYTLKS------CRITEAALA-KVLIGINSKEGNMDAVFNVLK 732

Query: 582 SLA 584
            +A
Sbjct: 733 DMA 735


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/518 (22%), Positives = 211/518 (40%), Gaps = 47/518 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+++L S     ++     ++ +++          +  +I  L +    Q+A  +  E+
Sbjct: 239 TYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEM 298

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                 + P   N L+      G +  AL +++EM  RGV  +       ++ FC+  K+
Sbjct: 299 AKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKM 358

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                 L ++ K+  +++   +    +I+GFC+   + EAF +LDELR R    + + Y 
Sbjct: 359 SDARQQLSDMLKK--NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYN 416

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            + +    +G +   E  LK K  +   G+ P    Y   + G      +  AKE  + +
Sbjct: 417 TLIDGLCRLGDL---ETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM 473

Query: 323 VSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +      D     A ++G +   D   A      M+ KG  P                  
Sbjct: 474 LHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPP------------------ 515

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
                            D+ +YNV V+ LC  G L EA  ++Q+M R G  PD   Y S 
Sbjct: 516 -----------------DVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSF 558

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           M A      LR  ++++  M + G +  + TY +LI   +  G ++ A+  F  M EKGV
Sbjct: 559 MHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGV 618

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
            P+  TY  L+ G C+   +  A + F +     +   +   +  +   C  G +  A +
Sbjct: 619 VPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALR 678

Query: 562 LLRGLSSDLGHSDS--HVILLKSLADAREVEMAIEHIK 597
           L   +       DS  H  LLK L    +V+ A++ I+
Sbjct: 679 LYAQMLGKRIRPDSCTHGALLKKLDKDYKVQ-AVQFIE 715



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 2/248 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  +  M E G  PT++T + +  + CK  +    +++   +     +    ++NV+++
Sbjct: 221 ALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLIN 280

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            L   G L++A G+IQEM + GL      YN L+   C++ LL  A  LW++M   G S 
Sbjct: 281 GLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSP 340

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            + ++N ++  F + G++  A +   +ML+K + PD  +Y +L+ G C+  N+  AF + 
Sbjct: 341 TVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILL 400

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADA 586
           ++    ++       +T +  LCR G    A KL   + +   H D  ++ +L+      
Sbjct: 401 DELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKL 460

Query: 587 REVEMAIE 594
             + MA E
Sbjct: 461 GNMLMAKE 468



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 108/223 (48%), Gaps = 3/223 (1%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           +++ LIG   +      ++ F  M+    +P +   + + K L  +N   + +EVY+++ 
Sbjct: 173 IVDVLIGGYLNY---QCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMG 229

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                  + +YN M+   C  G ++ A  ++ +M+ +G  P    +N L+    ++  L+
Sbjct: 230 EYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQ 289

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            AK L  +M  +G   +  TYN LI  + + G +  AL L+  M+ +GV+P   ++ +++
Sbjct: 290 QAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIM 349

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            G C+E  +  A +  +  +  ++M      +T +   CR G+
Sbjct: 350 YGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGN 392



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 174/400 (43%), Gaps = 29/400 (7%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +L   +V R ++P + +H+++  GF                       +S +RQ    D 
Sbjct: 328 ALWEEMVTRGVSPTVASHNTIMYGFCKEG------------------KMSDARQ-QLSDM 368

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           + K +  + I+ ++ +Y F      +  N  +AF + +E++F          N+L+  L 
Sbjct: 369 LKKNLMPDIISYNTLIYGF-----CRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLC 423

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
             G ++ ALK+ ++M +RG+    + + V +   C+   +       DE+     +    
Sbjct: 424 RLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQF 483

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           +  A ++  G  K     +AFK+ +E+  +   PD I Y +       +G++ E   +L+
Sbjct: 484 AYTARIV--GELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQ 541

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           K  + G  P    Y  F+   +    + E +E+   ++S   T        LI +  +++
Sbjct: 542 KMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHA-HALN 600

Query: 346 PR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            R   A+ +F  M EKG VP + T + L    CK  K D+  + +  +     F +  +Y
Sbjct: 601 GRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTY 660

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            ++++  C  G+ +EA  +  +M  K + PD   + +L++
Sbjct: 661 TILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLK 700


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 210/487 (43%), Gaps = 32/487 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVN----KITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S++++L +   +R+ +  D+    +       +I  +   Y  I+ SL    +  +A S+
Sbjct: 121 SHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSL 180

Query: 142 FNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F+ ++     + P+    ++L++ LA    +DNAL + DEM + GV+   + +   +   
Sbjct: 181 FSSLRR--RGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGC 238

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                  + + + +++ +   +  N +   V++  G CK  R +EA +V   +     + 
Sbjct: 239 FRTGMFEKAMKVWEQLVRDPGASPNLATYKVML-DGLCKLGRFKEAGEVWSRMMANNHQA 297

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D + Y I+       G V     V     K G+    + Y   I G       CE    G
Sbjct: 298 DTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGF------CEVGRTG 351

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR------------VPTLST 367
           E   + KF   D    + I  +++ +  +  +  + M+ +               P   T
Sbjct: 352 E---AWKFW--DSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVT 406

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              L   LC+   ++   E+ +    +    D+ SY+ M++  C  GR  +A  V + M 
Sbjct: 407 FGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMV 466

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           + G  P+   YN+L+   CR   +  A K++ +M ++GC   + TYN LI    +  + +
Sbjct: 467 KDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQ 526

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A  L   MLE+G  PD  TY SL+ GLC++  +  A  ++++ ++  + +   + +  +
Sbjct: 527 EASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILI 586

Query: 548 ISLCRRG 554
             LC  G
Sbjct: 587 HGLCSAG 593



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/495 (21%), Positives = 207/495 (41%), Gaps = 49/495 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L+   Q++    +L ++    +  D+  Y  ++    +    +KA  V+ +
Sbjct: 194 VTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQ 253

Query: 145 VKFNCEDIG--PEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +     D G  P +     +L  L   G    A +++  M     +  T+ +G+ I   C
Sbjct: 254 L---VRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLC 310

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
            +  +     +  ++ K    +++ SV   LI  GFC+  R  EA+K  D       +  
Sbjct: 311 RSGDVDSAARVYSDMVK-AGLVLDVSVYNSLI-KGFCEVGRTGEAWKFWDSTGFSGIR-Q 367

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
              Y I+ +     G V E   +LK+ +     +P    +   I GL        A E+ 
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           E   +    +D    +++I      D R+  A   +  M++ G  P     + L    C+
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCK-DGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCR 486

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +K ++ +++Y  +++N     + +YN ++  LC + + +EA  + +EM  +G  PD+  
Sbjct: 487 VSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRT 546

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASG-------------------------------- 465
           Y SL+   CR+  +  A ++WD++  +G                                
Sbjct: 547 YASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMK 606

Query: 466 ---CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              CS NL TYN L+  F E+G I+ A  L+  +L+ G+ PD  TY + ++GLC      
Sbjct: 607 EKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTP 666

Query: 523 AAFEVFNKSVNHDVM 537
               + N+ +   +M
Sbjct: 667 EGVLLLNEVLATGIM 681



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/448 (20%), Positives = 185/448 (41%), Gaps = 3/448 (0%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           + P  + +  +Y  +L  L    +      V  ++  N    D+  Y  +I  L +  + 
Sbjct: 256 RDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDV 315

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             A  V++++      +   + NSL+      G    A K +D     G+   T  + + 
Sbjct: 316 DSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITT-YNIM 374

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
                ++  + +   +L ++ + + S     V    +IHG C+      AF++L++ R  
Sbjct: 375 TKGLLDSGMVSEATELLKQL-ENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNS 433

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             + D  +Y  +   F   G   +   V K   K G  P ++ Y   I G     +I +A
Sbjct: 434 GEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDA 493

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            ++   + S          N LI  +   +  + A      M+E+G  P + T ++L + 
Sbjct: 494 IKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRG 553

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+  K D  + ++  +       D+  +N+++  LC++G++ EA+ +  EMK K   P+
Sbjct: 554 LCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPN 613

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  YN+LM+       +  A  LW  +  +G   ++ TYN  I            + L +
Sbjct: 614 LVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLN 673

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            +L  G+ P   T++ L+  + +   +Q
Sbjct: 674 EVLATGIMPTVITWSILVRAVIKYGPIQ 701



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/451 (20%), Positives = 199/451 (44%), Gaps = 24/451 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH----RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           N+LL          +A   F  +SH    R +  +   + + +   C    + + +S+  
Sbjct: 123 NTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFS 182

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            +R+R   +    V    ++ G  K  +++ A  +LDE+     + D + Y  +      
Sbjct: 183 SLRRR--GVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFR 240

Query: 274 MGSVFEREVVLKKK--RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            G +FE+ + + ++  R  G +P    Y+  + GL    R  EA E+   +++     D 
Sbjct: 241 TG-MFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADT 299

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                LI G   S D  SA   ++ M++ G V  +S  ++L K  C+  ++ E    +K 
Sbjct: 300 VTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGE---AWKF 356

Query: 391 LSANDY--FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCR 447
             +  +     + +YN+M   L  SG + EA  ++++++      PD   + +L+   C 
Sbjct: 357 WDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCE 416

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                 A ++ +    SG   ++ +Y+ +I++F + G    A  ++ NM++ G  P++  
Sbjct: 417 NGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHV 476

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL---- 563
           Y +L+ G C+ + +  A +++ +  ++         +T +  LC+   +  A+ L     
Sbjct: 477 YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEML 536

Query: 564 -RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
            RG   D+    ++  L++ L   ++V++A+
Sbjct: 537 ERGFKPDI---RTYASLIRGLCRDKKVDVAL 564



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 2/243 (0%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L T + + ++LC R   D  V ++  L       D  +Y+ ++S L    +L  A  +
Sbjct: 156 PNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDL 215

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFS 481
           + EM   G+  D   YN+L+  C R  +   A K+W+Q+    G S NL TY +++    
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           ++G  + A  ++  M+      D  TY  L+ GLC+  ++ +A  V++  V   ++L  S
Sbjct: 276 KLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVS 335

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLS-SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600
           + ++ +   C  G    A K       S +    ++ I+ K L D+  V  A E +K ++
Sbjct: 336 VYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLE 395

Query: 601 ESS 603
             +
Sbjct: 396 NDA 398



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 14/153 (9%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--------NLKTYNILISKFS 481
           G +P V  +N+L++A  R      A    D  FAS   G        NL+TYNI++    
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDA----DAFFASLSHGAFGRRIAPNLQTYNIILRSLC 169

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G+++ A+ LF ++  +GVAPD  TY++L+ GL +   L  A ++ ++  N+ V  A +
Sbjct: 170 ARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQ-ADA 228

Query: 542 ILSTFMISLC-RRGHFLVATKLLRGLSSDLGHS 573
           +    ++S C R G F  A K+   L  D G S
Sbjct: 229 VCYNALLSGCFRTGMFEKAMKVWEQLVRDPGAS 261


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 193/439 (43%), Gaps = 52/439 (11%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  RG  F+     + +   C N + G+ +S+L E+R+  NS++        +I GFC+G
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR--NSLMPDVFSYNTVIRGFCEG 190

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K +E+A ++ +E++   C    + + I+ + F   G + E    LK+ + +G+      Y
Sbjct: 191 KELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVY 250

Query: 300 REFILGLIVERRICEAKEL--GEVIVSGKFTIDDD----VLNALIGSVSSIDP-RSAIVF 352
              I G       C+  EL  G+ +        D       N LI     +   + A   
Sbjct: 251 TSLIRGF------CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F FMIE+G  P + T + L   LC   K+ E +++  ++   D   +  +YN++++ LC 
Sbjct: 305 FEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCK 364

Query: 413 SGRLREAYGVIQEMKRK--------------GL-----------------------DPDV 435
            G + +A  +++ MK++              GL                       DPDV
Sbjct: 365 DGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDV 424

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L+   C+E+ L  A  ++D +     +G+  T NIL++   + G++  A+ L+  
Sbjct: 425 ISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           + +  +  ++ TYT++++G C+   L  A  +  K    ++  +    +  + SLC+ G 
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 556 FLVATKLLRGLSSDLGHSD 574
              A +L   +  D    D
Sbjct: 545 LDQAWRLFEEMQRDNNFPD 563



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 123/557 (22%), Positives = 239/557 (42%), Gaps = 72/557 (12%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  +  +++ +LK L  + +     S+L++++ N +  D   Y  +I    +GK  +KA 
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            + NE+K +           L+      G +D A+    EM   G+E   + +   I  F
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 200 CENAKLGQVLSMLDEVRKRE--------NSMING-----------SVIAVLI-------- 232
           C+  +L +  ++ DEV +R         N++I G            +   +I        
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317

Query: 233 ------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                 I G C   + +EA ++L+ +  ++ +P+ + Y I+  +    G V +   +++ 
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL 377

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI-GSVSS 343
            +K    P    Y   + GL  +  + EA +L  +++      D DV+  NALI G    
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+  ++ ++EK       T + L  +  K    ++ +E++K +S +    + ++Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ--- 460
             M+   C +G L  A G++ +M+   L P V  YN L+ + C+E  L  A +L+++   
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 461 --------------------------------MFASGCSGNLKTYNILISKFSEVGEIEG 488
                                           M  +G S +L TY+ LI++F ++G ++ 
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+  F  M++ G  PDA    S+L+    +       E+  K V+ D++L + +  T M 
Sbjct: 618 AISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMD 677

Query: 549 SLCR-RGHFLVATKLLR 564
            +C    +  +A +LLR
Sbjct: 678 YMCNSSANMDLAKRLLR 694



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 137/300 (45%), Gaps = 20/300 (6%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L G   +++   A+     M     +P + + + + +  C+  + ++ +E+   +  +  
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + ++ +++   C +G++ EA G ++EMK  GL+ D+  Y SL+   C    L   K 
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+D++   G S    TYN LI  F ++G+++ A  +F  M+E+GV P+  TYT L++GLC
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
                + A ++ N  +  D        +  +  LC+ G    A +++  +       D  
Sbjct: 329 GVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNI 388

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634
           ++ ILL  L    +                  L E S  L+  L  SSY +P ++  +AL
Sbjct: 389 TYNILLGGLCAKGD------------------LDEASKLLYLMLKDSSYTDPDVISYNAL 430



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N +   V S +   A  F+  M+E        +LS L +   +  K+     V  ++   
Sbjct: 77  NLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR 136

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  ++ ++N+++  LC +    +A  +++EM+R  L PDV  YN+++   C    L  A
Sbjct: 137 GFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKA 196

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L ++M  SGCS +L T+ ILI  F + G+++ A+     M   G+  D   YTSL+ G
Sbjct: 197 LELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRG 256

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            C    L     +F++ +           +T +   C+ G    A+++ 
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 181/406 (44%), Gaps = 39/406 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L++     G I+ AL++ D M   GV  +   +   +   C+  KL Q + +L   R+
Sbjct: 153 NVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG--RQ 207

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            ++      V   ++I   CK   V +A K+ +E+R + CKPD + Y ++ + F   G +
Sbjct: 208 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRL 267

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E    LKK    G  P      + I   ++ R +C          SG   +D       
Sbjct: 268 DEAIRFLKKLPSYGCQP------DVISHNMILRSLC----------SGGRWMD------- 304

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                      A+     M+ KG +P++ T + L   LC++    + + V +++  + + 
Sbjct: 305 -----------AMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT 353

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            +  S+N ++   C    +  A   ++ M  +G  PD+  YN L+ A C++  +  A  +
Sbjct: 354 PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 413

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             Q+ + GCS +L +YN +I    +VG+ E A+ L   M  KG+ PD  T TS++ GL +
Sbjct: 414 LSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 473

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           E  ++ A + F+      +     I ++ +  LC+     +A   L
Sbjct: 474 EGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFL 519



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 185/423 (43%), Gaps = 18/423 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN-E 144
           SY+ ++     S +I     VL ++ V+    +++ Y  ++ SL      ++A  V   +
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRMGVSP---NAATYDAVLCSLCDRGKLKQAMQVLGRQ 207

Query: 145 VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++  C    P++  C  L+     +  +  A+K+F+EM ++G +   + + V I  FC+ 
Sbjct: 208 LQSKCY---PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKG 264

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +L + +  L   +K  +      VI+  +I+   C G R  +A K+L  +  + C P  
Sbjct: 265 GRLDEAIRFL---KKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSV 321

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + + I+       G + +   VL+   K G  P +  +   I G    + I  A E  E+
Sbjct: 322 VTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEI 381

Query: 322 IVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +VS     D    N L+ ++     +D   A+V  + +  KG  P+L + + +   L K 
Sbjct: 382 MVSRGCYPDIVTYNILLTALCKDGKVD--DAVVILSQLSSKGCSPSLISYNTVIDGLLKV 439

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K++  VE+ + +       D+ +   +V  L   G++REA      +KR  + P+   Y
Sbjct: 440 GKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIY 499

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           NS++   C+      A      M A GC     TY  LI   +  G  E A +L + +  
Sbjct: 500 NSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYS 559

Query: 499 KGV 501
           +G+
Sbjct: 560 RGL 562



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 7/214 (3%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F  +M  KG+ P +   + L +  CK  ++    ++  +L  +    D+ SYNV++S  C
Sbjct: 101 FLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYC 160

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            SG + EA  V+  M   G+ P+ + Y++++ + C    L+ A ++  +   S C  ++ 
Sbjct: 161 KSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVV 217

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           T  +LI    +   +  A++LF+ M  KG  PD  TY  L++G C+   L  A     K 
Sbjct: 218 TCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277

Query: 532 VNHDVMLARSILSTFMI--SLCRRGHFLVATKLL 563
            ++       ++S  MI  SLC  G ++ A KLL
Sbjct: 278 PSYGCQ--PDVISHNMILRSLCSGGRWMDAMKLL 309



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 162/394 (41%), Gaps = 38/394 (9%)

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEF----------KLMGSVFEREVV-------- 283
           +EE  + L+ +  +   PD IA   +  EF          ++MG + E   V        
Sbjct: 95  LEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNV 154

Query: 284 --------------LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                         L+   ++GV+P    Y   +  L    ++ +A ++    +  K   
Sbjct: 155 LISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYP 214

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D      LI  +        A+  FN M  KG  P + T + L K  CK  + DE +   
Sbjct: 215 DVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFL 274

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           K L +     D+ S+N+++  LC+ GR  +A  ++  M RKG  P V  +N L+   C++
Sbjct: 275 KKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQK 334

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            LL  A  + + M   G + N +++N LI  F     I+ A+     M+ +G  PD  TY
Sbjct: 335 GLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTY 394

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL----- 563
             LL  LC++  +  A  + ++  +     +    +T +  L + G   +A +LL     
Sbjct: 395 NILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCY 454

Query: 564 RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
           +GL  DL    S V  L      RE      ++K
Sbjct: 455 KGLKPDLITCTSVVGGLSREGKVREAMKFFHYLK 488



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 8/238 (3%)

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L  +G L E    ++ M  KG  PDV    +L+   C+    + A ++   +  SG   +
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + +YN+LIS + + GEIE ALR+   M   GV+P+A TY ++L  LC    L+ A +V  
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAR 587
           + +           +  + + C+      A KL   + +     D  ++ +L+K      
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 588 EVEMAIEHIKWIQE--SSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            ++ AI  +K +      P ++   +  L +  S   + + + LL   L++ CL S +
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISH-NMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 216/494 (43%), Gaps = 12/494 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL FF WA +   + H    Y  +L+ LS ++       +L+ +   +I L    + F++
Sbjct: 229 ALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVM 288

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            S  +    + A  V   ++    +    ICN+ + +L     +  AL+  + M   G+ 
Sbjct: 289 VSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIA 348

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            + + +   I  +C   ++ Q + ++D++  +  S    S   V+ +   C+ KR+ E  
Sbjct: 349 PNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGL--LCRDKRLNEIR 406

Query: 247 KVLDELRI-RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
           +++ +++   +  PD + Y  + +     G   E   +L++  KL       +Y   +  
Sbjct: 407 ELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHA 466

Query: 306 LIVERRICEAKELGEVIVSGKFT--IDDDVL---NALIGSVSSIDPRSAIVFFNFMIEKG 360
              E +I +AKEL    VS  F+   D DV+   + L G         A      M +  
Sbjct: 467 YCKEGKIQKAKEL----VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH 522

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P   T +     LC+  KS E  ++  +     +  +  +Y+V+V  L   G+L EA 
Sbjct: 523 CKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEAC 582

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            V++EM  KG  P+    N L+ + CR+   R A +L  +    GC+ N+  +  +I  F
Sbjct: 583 DVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGF 642

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +  ++E AL L  +M      PD  TYT+L++ L +   ++ A E+  K +   ++ + 
Sbjct: 643 CQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSP 702

Query: 541 SILSTFMISLCRRG 554
               + +   CR+G
Sbjct: 703 VTYRSVIHQYCRKG 716



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 172/408 (42%), Gaps = 41/408 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVR 216
           +L +L+       A ++   M+ R ++     FG  +  +    +L    +VL+++ +  
Sbjct: 252 MLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAG 311

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
              N  I  + I +L++     G  +++A +  + + +    P+ + Y  + + +  +  
Sbjct: 312 VEPNLSICNTAIHILVM-----GNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQ 366

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V +   ++ +    G +P    Y   +  L  ++R+ E +EL +     K   D  +L  
Sbjct: 367 VDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIK-----KMQTDSKLL-- 419

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                                     P   T ++L + L K    DE +E+ +      +
Sbjct: 420 --------------------------PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRF 453

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D   Y+ +V   C  G++++A  ++ EM  KG DPDV  Y S+++  CR   L  AKK
Sbjct: 454 KVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKK 513

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +  QM+   C  N  TY   ++     G+   A ++ +   E+   P+A TY+ ++ GL 
Sbjct: 514 MMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLR 573

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +E  L  A +V  + +          ++  + SLCR G    A +LL+
Sbjct: 574 REGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLK 621



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/504 (19%), Positives = 201/504 (39%), Gaps = 56/504 (11%)

Query: 56  INPYLLTHHSLALGFFN---------WASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           I P ++T++ L  G+ N            Q P+   SP  +SY++++  L   +++N I 
Sbjct: 347 IAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIR 406

Query: 105 SVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
            ++K+++ + K+  D   Y                                   NSL+ +
Sbjct: 407 ELIKKMQTDSKLLPDHVTY-----------------------------------NSLIQM 431

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L+  G+ D AL++  E      +   + +   +  +C+  K+ +   ++ E+  +     
Sbjct: 432 LSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSK--GCD 489

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    ++ GFC+  ++++A K++ ++    CKP+ + Y          G   E   +
Sbjct: 490 PDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKM 549

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS- 342
           +    +    P    Y   + GL  E ++ EA ++   ++   F  +   +N L+ S+  
Sbjct: 550 MNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCR 609

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
              PR A       + KG    +   + +    C+++  +  + +   +   +   D  +
Sbjct: 610 DGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVT 669

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++  L  + R+ EA  +  +M R+GL P    Y S++   CR+   R    L     
Sbjct: 670 YTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKG--RVEDLLKLLKK 727

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
               S     YN++I K  + G +E A  L   +L      DA T   L+E         
Sbjct: 728 MLLKSRFQTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPM 787

Query: 523 AAFEV----FNKSVNHDVMLARSI 542
           +A++V    FN+++  D+ L   +
Sbjct: 788 SAYKVACRMFNRNLIPDLKLCEKV 811


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 166/377 (44%), Gaps = 7/377 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL        +  AL    +M   G E   + FG  +  FC   ++   L M D  R
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFD--R 176

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             E       VI   II G CK K+V+ A  +L+ + +   +PD + Y  +       G 
Sbjct: 177 MVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGR 236

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   ++    K  + P    +   I   + E RI EA+EL E ++  + ++D D++  
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMI--RRSLDPDIVTY 294

Query: 337 ---LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
              + G         A   F FM+ KG  P + T S L    CK  K +  ++++  +S 
Sbjct: 295 SLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +  +Y V++   C +G+L  A  + + M   G+ P++  YN L+   C    +  
Sbjct: 355 RGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEK 414

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  +   M  SG   ++ TYNI+I    + GE+  A  L+ ++  KG+ PD  TYT+++ 
Sbjct: 415 ALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMML 474

Query: 514 GLCQETNLQAAFEVFNK 530
           GL ++     A  +F K
Sbjct: 475 GLYKKGLRGEADALFRK 491



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 146/312 (46%), Gaps = 3/312 (0%)

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           L K  KLG  P    +   + G     RI +A  + + +V   +  +  + N +I G   
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S    +A+   N M   G  P   T ++L   LC   + D+   +   ++  + + D+ +
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N ++      GR+ EA  + +EM R+ LDPD+  Y+ L+   C    L  A++++  M 
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + GC  ++ TY+ILI+ + +  ++E  ++LF  M ++GV  +  TYT L++G C+   L 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLN 378

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILL 580
            A E+F   V   V       +  +  LC  G    A  +L  +      +D  ++ I++
Sbjct: 379 VAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIII 438

Query: 581 KSLADAREVEMA 592
           + +  A EV  A
Sbjct: 439 RGMCKAGEVADA 450



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 131/260 (50%), Gaps = 8/260 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M+E G  P +   + +   LCK  + D  +++   +  +    D  +YN ++S
Sbjct: 170 ALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLIS 229

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC SGR  +A  ++  M ++ + PDV  +N+L++AC +E  +  A++L+++M       
Sbjct: 230 GLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDP 289

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY++LI        ++ A ++F  M+ KG  PD  TY+ L+ G C+   ++   ++F
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSL 583
            +     V+      +  +   CR G   VA ++ +     G+  ++    ++ +LL  L
Sbjct: 350 CEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNI---ITYNVLLHGL 406

Query: 584 ADAREVEMAIEHIKWIQESS 603
            D  ++E A+  +  +Q+S 
Sbjct: 407 CDNGKIEKALVILADMQKSG 426



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 158/348 (45%), Gaps = 3/348 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            SLL        I +AL MFD M   G E + + +   I   C++ ++   L +L+  R 
Sbjct: 155 GSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLN--RM 212

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + +   +V    +I G C   R ++A +++  +  RE  PD   +  + +     G +
Sbjct: 213 EVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRI 272

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E + ++  +  + P    Y   I GL +  R+ EA+++   +VS     D    + L
Sbjct: 273 SEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSIL 332

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G   S      +  F  M ++G V    T + L +  C+  K +   E++K +     
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGV 392

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +YNV++  LC +G++ +A  ++ +M++ G+D D+  YN ++   C+   +  A  
Sbjct: 393 PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWD 452

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           L+  +   G + ++ TY  ++    + G    A  LF  M E G+ P+
Sbjct: 453 LYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 6/299 (2%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ F   M++ G  P + T  +L    C+ ++  + + ++  +    Y  ++  YN ++ 
Sbjct: 135 ALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIID 194

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC S ++  A  ++  M+  G+ PD   YNSL+   C       A ++   M       
Sbjct: 195 GLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYP 254

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ T+N LI    + G I  A  L+  M+ + + PD  TY+ L+ GLC  + L  A ++F
Sbjct: 255 DVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMF 314

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADA 586
              V+          S  +   C+        KL   +S    + ++ ++ +L++    A
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRA 374

Query: 587 REVEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            ++ +A E  KW+      P ++      L   L  +   E  L++L  +Q+  +D++I
Sbjct: 375 GKLNVAEEIFKWMVFCGVPPNIIT--YNVLLHGLCDNGKIEKALVILADMQKSGMDADI 431



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 1/174 (0%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           +FF+ M++   +P+++  S L   + K  K D ++ +++ +       ++ + N++++  
Sbjct: 68  LFFH-MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCF 126

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   +L  A   + +M + G +PD+  + SL+   CR D +  A  ++D+M   G   N+
Sbjct: 127 CRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNV 186

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             YN +I    +  +++ AL L + M   G+ PDA TY SL+ GLC       A
Sbjct: 187 VIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P ++ ++ L+ A  +         LW+QM   G   NL T NIL++ F    ++  AL  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M++ G  PD  T+ SLL G C+   +  A  +F++ V         I +T +  LC+
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 553 RGHFLVATKLLRGLSSD 569
                 A  LL  +  D
Sbjct: 199 SKQVDNALDLLNRMEVD 215


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 160/346 (46%), Gaps = 12/346 (3%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVV 283
           ++IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +
Sbjct: 148 AIIASHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYNILLKSLCNQGKSGQADDL 206

Query: 284 LKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNAL 337
           L+   + G   +P    Y   I G   E  + +A +L + +V      D      V++AL
Sbjct: 207 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHAL 266

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                ++D   A  F   M+ KG +P   T +NL        +  E V V+K +      
Sbjct: 267 C-KARAMDKAEA--FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSIL 323

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ + N ++  LC  G+++EA  V   M  KG +PDV  Y  ++     +  L     L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +D M   G + ++ T+N+LI  ++  G ++ A+ +F+ M + GV P   TY +++  LC+
Sbjct: 384 FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              +  A E FN+ ++  V+  +      +   C  G  L A +L+
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 203/480 (42%), Gaps = 17/480 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +      + ++ H +       R   A+D +L +        D   Y  +
Sbjct: 131 LALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNIL 190

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P++   N+++     +G ++ A  +F EM  
Sbjct: 191 LKSLCNQGKSGQ-ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-----VLIIHGFC 237
           RG+    + +   +   C+   + +  + L +       M+N  V+        +I+G+ 
Sbjct: 250 RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ-------MVNKGVLPDNWTYNNLIYGYS 302

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              + +EA +V  E+R +   PD +A   +       G + E   V       G  P   
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
            Y   + G   +  + +  +L ++++      D    N LI + ++      A++ FN M
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P + T   +   LC+  K D+ +E +  +       D  +Y+ ++   CT G L
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  +I E+   G+  D+ F+ S++   C+   +  A+ ++D     G   +   YN+L
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +  +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F + +   +
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 190/440 (43%), Gaps = 17/440 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVF 142
            SY+ +LKSL    +    D +L+ +          V  Y  +I    +  +  KA  +F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+      I P++   +S++  L     +D A     +M ++GV      +   I+ + 
Sbjct: 245 KEMVQ--RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG-FCKGKRVEEAFKVLDELRIRECKP 259
              +  + + +  E+R++    I   V+A+  + G  CK  +++EA  V D + ++   P
Sbjct: 303 STGQWKEAVRVFKEMRRQS---ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEA 315
           D  +Y I+   +   G + +   +       G+AP    +   I       ++++ +   
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 419

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            E+ +  V         V+ AL   +  +D   A+  FN MI++G VP       L +  
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALC-RIGKMD--DAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C      +  E+   +  N    D+  +  +++ LC  GR+ +A  +       GL PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN LM+  C    +  A +++D M ++G   N+  Y  L++ + ++G I+  L LF  
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           ML+KG+ P    Y  +++GL
Sbjct: 597 MLQKGIKPSTILYNIIIDGL 616



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 5/244 (2%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTDMESYN 404
           P  A+ FF  ++  G        S+L K  C+  ++DE +++    +       D+ SYN
Sbjct: 129 PELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 188

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +++  LC  G+  +A  +++ M   G    PDV  YN++++   +E  +  A  L+ +M 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +L TY+ ++    +   ++ A      M+ KGV PD  TY +L+ G       +
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 308

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILL 580
            A  VF +     ++     L+T M SLC+ G    A  +   ++    + D  S+ I+L
Sbjct: 309 EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368

Query: 581 KSLA 584
              A
Sbjct: 369 NGYA 372



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 167/421 (39%), Gaps = 42/421 (9%)

Query: 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYI 170
           + I  D   +  +I +        KA  +FNE++ +   + P +    +++A L   G +
Sbjct: 390 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH--GVKPHVVTYMTVIAALCRIGKM 447

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A++ F++M  +GV      +   I  FC +  L +   ++ E+    N M    V   
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMN--NGMRLDIVFFG 505

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            II+  CK  RV +A  + D        PD + Y ++ + + L+G + +   V       
Sbjct: 506 SIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSA 565

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   + G     RI E   L   ++         + N +I G   +     A
Sbjct: 566 GIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPA 625

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
            V F+ M E G      T S + + L K    DE + ++K L A +   D+ + N M++ 
Sbjct: 626 KVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAG 685

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           +  + R+ EA  +   + R GL P                                C+  
Sbjct: 686 MFQTRRVEEAKDLFASISRSGLVP--------------------------------CA-- 711

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+I+I+   + G +E A  +F +M   G  PD+     ++  L ++  +  A    +
Sbjct: 712 -VTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 530 K 530
           K
Sbjct: 771 K 771


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 182/414 (43%), Gaps = 42/414 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L    +    L +  +M  RG++ + +   + I  FC+   +    S+L ++ K
Sbjct: 66  NKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILK 125

Query: 218 ---RENSMINGSVIAVLIIHG-----FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
              + N++   ++I  L ++G      C   ++++A  + +++ +    PD   + I+ +
Sbjct: 126 MGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVD 185

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            F   G V E + VL      G+ P    Y   + G  + +++ +AK +           
Sbjct: 186 GFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSI----------- 234

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                                  FN M + G  P + + S L    CK    DE +E+ K
Sbjct: 235 -----------------------FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLK 271

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +       ++ +Y+ ++  LC SG++  A  ++ EM  +G  P++  Y+S+++A C+  
Sbjct: 272 EMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 331

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A  L  QM   G   N+ TY ILI    + G++E A ++F ++L KG   +  TYT
Sbjct: 332 QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYT 391

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            +++G C +     A  + +K  ++  +         ++SL ++    +A KLL
Sbjct: 392 VMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLL 445



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 179/385 (46%), Gaps = 13/385 (3%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSH 182
           I+ SL++ K+      +  +++F    I P +  CN L+      G+I +A  +  ++  
Sbjct: 68  ILGSLVKSKHYHTVLYLSQKMEF--RGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILK 125

Query: 183 RGVEFSTIGFGVFIWKFCENAKL-------GQVLSMLDEVRKRENSMINGSVIA-VLIIH 234
            G + +TI     I   C N K+       G++   +D   K     IN  V    +++ 
Sbjct: 126 MGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVD 185

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GFCK  RV+EA  VL  + I+  KP  + Y  + + + L+  V + + +     +LGV+P
Sbjct: 186 GFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSP 245

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   I G    + + EA EL + +   +   +    ++LI G   S     A+   
Sbjct: 246 DIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLV 305

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M ++G+ P + T S++   LCK ++ D  + +   +       +M +Y +++  LC S
Sbjct: 306 DEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQS 365

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+L +A  V +++  KG + +V  Y  +++  C + L   A  L  +M  +GC  N KTY
Sbjct: 366 GKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTY 425

Query: 474 NILISKFSEVGEIEGALRLFHNMLE 498
            I+I    +  E E A +L   M+E
Sbjct: 426 EIIILSLFKKDENEMAEKLLCEMIE 450



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 24/335 (7%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+    K K       +  ++  R  KP+ +   I+   F  +G +     VL K  K+G
Sbjct: 68  ILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMG 127

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
             P T      I GL +  +I +                    + ++G +     + A+ 
Sbjct: 128 YKPNTITLNTLIKGLCLNGKIHDK-------------------HCIVGKL-----KDAVD 163

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            FN MI +   P + T + L    CK  +  E   V  ++        + +YN ++    
Sbjct: 164 LFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYF 223

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
              ++ +A  +   M + G+ PD+  Y+ L+   C+  ++  A +L  +M       N+ 
Sbjct: 224 LVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVV 283

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ LI    + G+I  AL+L   M ++G  P+  TY+S+L+ LC+   +  A  +  + 
Sbjct: 284 TYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQM 343

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            N  +       +  +  LC+ G    A K+   L
Sbjct: 344 KNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDL 378


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 194/445 (43%), Gaps = 26/445 (5%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
              N T S   +  IL SL  +   + + S+ +Q++ N +  +      +I    Q    
Sbjct: 4   HHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQN 63

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             +FSVF  +             +L+  L   G I  AL   D++  +G + + + +G  
Sbjct: 64  ALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTL 123

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
           I   C   K+GQ  + L+ +R+ +  ++   V+    II G CK K V +AF +  E+  
Sbjct: 124 INGLC---KVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVA 180

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           +   P  + Y  +     +M  + +   +L K     + P    +   I     E ++ E
Sbjct: 181 KRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKE 240

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           AK +  V++      +    N+L+     ++  + A   FN MI+               
Sbjct: 241 AKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKM-------------- 286

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
                   DE + +++ +     + DM  YN ++  LC SGR   A   I EM  +G  P
Sbjct: 287 -------VDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPP 339

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D+  YNSL++A C+   +  A +L  ++   G   ++ TYNILI+   + G ++ A ++F
Sbjct: 340 DIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVF 399

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQE 518
            ++L KG   D  TY ++++G C++
Sbjct: 400 EDLLVKGYNTDVYTYNAMIKGFCKK 424



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF N +++KG      T + L K LC + +  + +  +  + A  +  +  SY  +++ L
Sbjct: 69  VFAN-ILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGL 127

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+ R A   ++ +  K + PDV  YN++++  C++ L+  A  L+ +M A     ++
Sbjct: 128 CKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSV 187

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN LI     + +++ A+ L H M+ + + P   T++ L++  C+E  ++ A  VF  
Sbjct: 188 VTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAV 247

Query: 531 SVNHDV 536
            +  DV
Sbjct: 248 MMKEDV 253



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 94/209 (44%)

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            K   P++     +  +L K N    +V +++ +  N   +++ + +++++     G+  
Sbjct: 5   HKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNA 64

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            ++ V   + +KG   D   + +L++  C +  +  A    D++ A G   N  +Y  LI
Sbjct: 65  LSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLI 124

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +   +VG+   AL     +  K V PD   Y ++++GLC++  +  AF ++ + V   + 
Sbjct: 125 NGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRIC 184

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGL 566
            +    +T +  LC       A  LL  +
Sbjct: 185 PSVVTYNTLICGLCIMAQLKDAIGLLHKM 213



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L  QM  +G + NL T +ILI+ +S++G+   +  +F N+L+KG   DA T+T+L++GLC
Sbjct: 34  LHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTTLIKGLC 93

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
            +  +  A    +K V     L +    T +  LC+ G    A + LR +   L   D  
Sbjct: 94  LKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPD-- 151

Query: 577 VILLKSLADA 586
           V++  ++ D 
Sbjct: 152 VVMYNTIIDG 161



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 8/197 (4%)

Query: 133 KNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           K   +A ++F E+ F  + I P+  I NSL+  L   G    ALK   EM +RG      
Sbjct: 285 KMVDEAMNLFEEMHF--KQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIF 342

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVL 249
            +   +   C+N  + + + +L +++ +    I  SV    ++I+G CK  R+++A KV 
Sbjct: 343 TYNSLLDALCKNYHVDKAIELLTKLKDQG---IQPSVCTYNILINGLCKSGRLKDAEKVF 399

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           ++L ++    D   Y  + + F   G   E   ++ K +  G +P   +    I  L  +
Sbjct: 400 EDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDK 459

Query: 310 RRICEAKELGEVIVSGK 326
               +A +  E+IV GK
Sbjct: 460 GENDKAGKFREMIVRGK 476


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 218/505 (43%), Gaps = 12/505 (2%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
            P LE  L + G+  ++   L  RV+N       +L   FF WAS+QP + HS   Y ++
Sbjct: 72  VPKLELALQESGV--AVRSGLTERVLNR-CGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 128

Query: 91  LKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFN 148
           +K L   RQ  A+ +++++++  N   +   V+  ++      +  +KA  V +E+ K+ 
Sbjct: 129 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 188

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           CE     +   LL  L  +G +  A  +F++M  R    +   F   ++ +C   KL + 
Sbjct: 189 CEP-DEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTP-TLKHFTSLLYGWCREGKLMEA 246

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
             +L  V+ RE       V+   ++ G+    ++ +A+ +L E+R +EC+P+ +++  + 
Sbjct: 247 KYVL--VQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLI 304

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
           +       + E   V  + +  G       Y   I G     +I +  EL   +I  G  
Sbjct: 305 QALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHI 364

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 L+ +       +    I     M + G  P L+  + + +  CK  +  E V V
Sbjct: 365 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 424

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSLMEAC 445
           +  + A      ++++ +M+    +   L EA    +EM  +GL   P       L+ + 
Sbjct: 425 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 484

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            R + L  +K +W  +   GC  N+  + I I      G ++ A     +M++ GV P  
Sbjct: 485 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQP 544

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            T+  L+ GL +  N Q A E+  K
Sbjct: 545 DTFAKLMRGLRKLYNRQIAAEITEK 569



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V ++++E+R REN       + V+++  F   + V++A +VLDE+    C+PD   
Sbjct: 137 QFGAVWALIEEMR-RENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHV 195

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   + +  R +   P    +   + G   E ++ EAK +   I 
Sbjct: 196 FGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR 254

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
              F  D  V N L+ G  ++     A      M  K   P + + + L + LC + K +
Sbjct: 255 EAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKME 314

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E + V+  + +     D  +Y  ++S  C  G++ + Y ++  M ++G  P+   Y  +M
Sbjct: 315 EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIM 374

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A  +++ L    +L ++M   GC+ +L  YNI+I    ++GEI+  +R+++ M   G++
Sbjct: 375 AAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLS 434

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           P   T+  ++ G   +  L  A E F + V   ++ A
Sbjct: 435 PGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSA 471



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 8/241 (3%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            PTL   ++L    C+  K  E   V   +    +  D+  YN +++    +G++ +AY 
Sbjct: 224 TPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYD 283

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +++EM+RK  +P+V  + +L++A C +  +  A +++ +M + GC  +  TY  LIS F 
Sbjct: 284 LLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFC 343

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G+I     L  NM+++G  P+  TY  ++    ++  L+   E+  +          +
Sbjct: 344 KWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLN 403

Query: 542 ILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
           I +  +   C+ G      ++       GLS  L   D+ VI++      R +  A E  
Sbjct: 404 IYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGL---DTFVIMIHGFLSQRCLVEACEFF 460

Query: 597 K 597
           K
Sbjct: 461 K 461


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 207/475 (43%), Gaps = 14/475 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVL-KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++  +L+ L  S ++  +  +L  +++   ++ D      I+  L   ++T  A ++F++
Sbjct: 12  TFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDK 71

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +      +L+  L     +D A+ +  +M  RG+   T+   V I   C   +
Sbjct: 72  MA-ELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGR 130

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   L +    R+  ++     +    ++HG  K  R+ +A +VL E+      PD    
Sbjct: 131 LRHALGVY---RQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTL 187

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL--GEVI 322
            +V +   L   V +   ++++    G+A     Y   + GL    R+ EA  L  GEV 
Sbjct: 188 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
             G FT D    + +I G   +   R A+  F    E    PT  T ++L    C+    
Sbjct: 248 RRG-FTPDIVTYSTVIDGLCKAGRLRDAVDIFE---EMSCAPTAITYNSLIGGYCRAGDM 303

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DE + +   +  ++   D+ +Y  ++S  C  GRL +AY + Q+M    L PDV  + SL
Sbjct: 304 DEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSL 363

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C E  +  A +L +++   GC   + TYN ++  + +  ++  A  L  +   +G 
Sbjct: 364 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNK--SVNHDVMLARSILSTFMISLCRRG 554
            P+  TY  L+ G C+      A +  ++  S       + ++ +  + +LCR G
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 478



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/513 (20%), Positives = 222/513 (43%), Gaps = 34/513 (6%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           + A+  F+  ++     H+  +Y++++  L  +R ++    +L  +K   +   + ++  
Sbjct: 63  TTAMALFDKMAELGAVNHT--TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNV 120

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE---ICNSLLAVLASDGYIDNALKMFDEM- 180
           +I  L +    + A  V+ ++     D  P        L+  L+  G + +A+++  EM 
Sbjct: 121 VIGGLCRAGRLRHALGVYRQMN----DAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMV 176

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
           S R V  +T    V +   C   ++     +++E+  R   M   ++    ++ G CK +
Sbjct: 177 SARHVPDNTT-LTVVVQSLCLGDRVDDARELVEEMLHR--GMAANAITYSALVDGLCKCE 233

Query: 241 RVEEAFKVL-DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           R++EA  +L  E+  R   PD + Y  V +     G + +   + ++   +  AP    Y
Sbjct: 234 RLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITY 290

Query: 300 REFILGLIVERRICEAKELGEVI-VSGKFTIDDDVLNALIGSVSSIDP-------RSAIV 351
              I G       C A ++ E I + GK  +DD+    +I   + +           A  
Sbjct: 291 NSLIGG------YCRAGDMDEAIRLLGKM-VDDNCAPDVITYTTLMSAFCKMGRLDDAYE 343

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F  M+     P + T ++L   LC   + ++ +E+ + ++       + +YN +V   C
Sbjct: 344 LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYC 403

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGN 469
            S ++R+A  ++ + + +G  P+   YN L+  CCR      A +  DQ+ + G  C  +
Sbjct: 404 KSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 463

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  Y I++      G  + A++ +  M+++G  P A T+ +++  LC+    Q A E+  
Sbjct: 464 VAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLE 523

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           + + +            + + CR G    A +L
Sbjct: 524 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 556



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 171/397 (43%), Gaps = 58/397 (14%)

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + DE+  RG+    +     + + C+       +++ D++   E   +N +    LI H 
Sbjct: 33  LLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMA--ELGAVNHTTYYNLI-HP 89

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK + ++EA  +L +++ R   P  + + +V       G         + +  LGV  +
Sbjct: 90  LCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAG---------RLRHALGVYRQ 140

Query: 296 TND--------YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            ND        Y + + GL    R+                                  R
Sbjct: 141 MNDAHPPDFLTYTKLVHGLSKAGRL----------------------------------R 166

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+     M+    VP  +TL+ + ++LC  ++ D+  E+ + +       +  +Y+ +V
Sbjct: 167 DAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALV 226

Query: 408 SFLCTSGRLREAYGVI-QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
             LC   RL EA  ++  E+ R+G  PD+  Y+++++  C+   LR A  ++++M    C
Sbjct: 227 DGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SC 283

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +    TYN LI  +   G+++ A+RL   M++   APD  TYT+L+   C+   L  A+E
Sbjct: 284 APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYE 343

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +F + V + +       ++ +  LC  G    A +LL
Sbjct: 344 LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELL 380



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 148/347 (42%), Gaps = 9/347 (2%)

Query: 85  LSYHSILKSLSLSRQIN-AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++Y +++  L    +++ A+  +L +V     T D   Y  +I  L +    + A  +F 
Sbjct: 220 ITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE 279

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           E+      I     NSL+      G +D A+++  +M         I +   +  FC+  
Sbjct: 280 EMSCAPTAI---TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMG 336

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +L     +  ++    N +    V    ++ G C   R+E+A ++L+E+  R C P    
Sbjct: 337 RLDDAYELFQQMVA--NKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT 394

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELGEVI 322
           Y  V + +     V + E ++   R  G  P T  Y   + G     R  +A + L ++ 
Sbjct: 395 YNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLN 454

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
             G        + A+I      D R+  A+ F+  MI++G VP  +T + +   LCK ++
Sbjct: 455 SEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQ 514

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
             +  E+ + +    +     + + +VS  C +G +++A  +  E++
Sbjct: 515 PQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 10/220 (4%)

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G  P    L+ +   LC    +   + ++  ++          YN ++  LC +  L 
Sbjct: 39  DRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLD 97

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA G++ +MK +G++P    +N ++   CR   LR A  ++ QM  +    +  TY  L+
Sbjct: 98  EAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLV 156

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              S+ G +  A+++   M+     PD TT T +++ LC    +  A E+  + + H  M
Sbjct: 157 HGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEML-HRGM 215

Query: 538 LARSI-LSTFMISLCRRGHFLVATKLL------RGLSSDL 570
            A +I  S  +  LC+      A  LL      RG + D+
Sbjct: 216 AANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDI 255


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/501 (22%), Positives = 207/501 (41%), Gaps = 21/501 (4%)

Query: 72  NWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLK----------QVKVNKITLDSSV 121
           NW S  P F H+  SY ++   LS  +      S+++             V    LD++ 
Sbjct: 89  NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148

Query: 122 YR---FIIPSLI----QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
            R   F+  +L+           A   F  V+ +   I    C  LL  + +        
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIW 208

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
             + E+   G       + + I KFC+   +     + +E+RKR   +   +V    +I+
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKR--GLRPTTVSFNTLIN 266

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK + ++E F++   +      PD   Y ++       G +   E +  + ++ G+ P
Sbjct: 267 GLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRP 326

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
               +   I G    RRI  A      +++     D  + N L+  +  + D   A    
Sbjct: 327 NGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M   G  P   T + L    CK    +  +E+ K ++      D  ++  ++S  C  
Sbjct: 387 DEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR+R+A   ++EM   G+ PD + Y  +++  C++  ++   KL  +M  +G    + TY
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN-KSV 532
           N+L++   + G+++ A  L   ML  GV PD  TY  LLEG C+    +   ++ N K +
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGL 566

Query: 533 NHDVMLARSILSTFMISLCRR 553
             D     S++S +  SL  R
Sbjct: 567 IVDYAYYTSLVSEYNKSLKDR 587



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 10/260 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A + FN + ++G  PT  + + L   LCK    DE   + K +  N  + D+ +Y+V+
Sbjct: 240 RDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  GRL  A  +  EM+++GL P+   + +L++  CR   +  A   + QM   G 
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGV 359

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +L  YN L++   +VG++  A +L   M   G+ PD  TYT+L++G C+E +L++A E
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 527 VFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLR-----GLSSDLGHSDSHVILL 580
           +  K +N + ++  ++  T +IS  CR G    A + LR     G+  D     ++ +++
Sbjct: 420 I-RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD---DATYTMVI 475

Query: 581 KSLADAREVEMAIEHIKWIQ 600
                   V+M  + +K +Q
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQ 495



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           ++ YN++++  C  G +R+A  +  E++++GL P    +N+L+   C+   L    +L  
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKK 282

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M  +    ++ TY++LI    + G ++ A +LF  M ++G+ P+  T+T+L++G C+  
Sbjct: 283 TMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSR 342

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSD 574
            + +A   +++ +   V     + +T +  LC+ G    A KL+      G+  D     
Sbjct: 343 RIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPD---KI 399

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQE 601
           ++  L+       ++E A+E  K + E
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNE 426


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/523 (22%), Positives = 224/523 (42%), Gaps = 13/523 (2%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W   LE  +  L LR  L P LV  V+     +   +AL FF W+ +Q  + H P+ Y  
Sbjct: 33  WNHKLEGKMRHL-LR-GLKPRLVCAVLLSQ--SDERVALDFFFWSDRQWRYRHDPIVYCV 88

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS ++       VL+ +    I      +  ++ S  +    + A  V   ++   
Sbjct: 89  MLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAG 148

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            +    +CN+ + VL     ++ AL+  + M   G+  + + +   I  +C+  ++   +
Sbjct: 149 IEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAM 208

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
            ++ E+  +  S    S   V+   GF CK +R+ E   V++++   +   D + Y  + 
Sbjct: 209 ELISEMPLKGCSPDKVSYYTVM---GFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLI 265

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
                     E    L++ +K G       Y   +     E R+ +AKE+   + +    
Sbjct: 266 HMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCI 325

Query: 329 IDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            D     A+I   S   +   A      M + G  P   + +   K LC++  S E  E+
Sbjct: 326 PDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREM 385

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            K      +  +  +Y+V++      G+L +A  V++EM  KG  P     N L+++ CR
Sbjct: 386 MKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCR 445

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              +  AKK  ++    GC+ N   +  +I +F +  +IE AL L  +M      PDA T
Sbjct: 446 IGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVT 505

Query: 508 YTSLLEGLCQETNLQAAFE----VFNKSVNHDVMLARSILSTF 546
           YT++++ L ++  ++ A E    +  K ++   +  R+++  +
Sbjct: 506 YTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRY 548



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 162/413 (39%), Gaps = 42/413 (10%)

Query: 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLS 210
           P +   +L VL+       A ++   M  RG++ +   F   +  +    KL    QVL+
Sbjct: 83  PIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLT 142

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           M+ +     N ++  + I VL++        +E+A + L+ +++    P+ + Y  + + 
Sbjct: 143 MMQKAGIEPNLLVCNTAIHVLVMANM-----LEKALRFLERMQLLGIMPNVVTYNCLIKG 197

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           +  +  V +   ++ +    G +P    Y   +  L   RRI E  ++ E +   K   D
Sbjct: 198 YCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLAD 257

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
               N LI                                    LCK   +DE ++  + 
Sbjct: 258 QVTYNTLI----------------------------------HMLCKHQHADEALQFLRE 283

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                +  D   Y+ +V   C  GR+ +A  ++ EM  +G  PDV  Y +++    +   
Sbjct: 284 AQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGE 343

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+K+  QM+  GC  N  +Y   +    + G    A  +     E+   P+A TY+ 
Sbjct: 344 VGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSV 403

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++ G  +E  L  A +V  + +          ++  + SLCR G    A K +
Sbjct: 404 VMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFM 456



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/498 (20%), Positives = 208/498 (41%), Gaps = 63/498 (12%)

Query: 56  INPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           I P ++T++ L  G+ +           S+ P    SP  +SY++++  L  +R+I  + 
Sbjct: 184 IMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVM 243

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK---FNCEDIGPEICNSLL 161
            V+++++  K+  D   Y  +I  L + ++  +A     E +   F  + +G    ++++
Sbjct: 244 DVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGY---SAIV 300

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
                +G +D A ++ +EM  RG     + +   I  F +  ++GQ   ML ++ K  + 
Sbjct: 301 DSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYK--HG 358

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
               +V     + G C+     EA +++     +   P+ I Y +V   F+  G + +  
Sbjct: 359 CKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDAC 418

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE--------------VIVSGKF 327
            V+++    G  P   +    +  L    R+ EAK+  E                V  +F
Sbjct: 419 DVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRF 478

Query: 328 TIDDDVLNAL------------------------IGSVSSIDPRSAIVFFNFMIEKGRVP 363
              DD+  AL                        +G    I+  + +     M++KG  P
Sbjct: 479 CQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLK--MLKKGIDP 536

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           T  T   +     +  + ++L+ +  K+L+  +  T   ++N ++  LCT G L  A  +
Sbjct: 537 TPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRT---AFNQVIEKLCTFGNLEAADKL 593

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++ R     D +  + LME+  R+ +   A K+  +MF+     +LK    +  K  +
Sbjct: 594 LGKVLRTASRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQ 653

Query: 483 VGEIEGALRLFHNMLEKG 500
            G+ E A  LF   +E+G
Sbjct: 654 EGKSEEADNLFLRFVERG 671



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           VMVS+   +G+LR A  V+  M++ G++P++   N+ +      ++L  A +  ++M   
Sbjct: 124 VMVSY-SRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLL 182

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   N+ TYN LI  + ++  +E A+ L   M  KG +PD  +Y +++  LC+   ++  
Sbjct: 183 GIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREV 242

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            +V  K  +  ++  +   +T +  LC+  H   A + LR
Sbjct: 243 MDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLR 282


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 195/438 (44%), Gaps = 7/438 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +  ++ KA+S ++E+      I P++   NS++A L     +D A++
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLD--RGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           + + M   GV    + +   +  +C + +  + +  L ++R   + +    V   L++  
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS--DGVEPDVVTYSLLMDY 310

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R  EA K+ D +  R  KP+   Y  + + +   G++ E   +L    + G+ P 
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFN 354
              +   I     + ++ +A  +   +       +     A+IG +  S     A+++F 
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            MI++G  P     ++L   LC  NK +   E+   +       +   +N ++   C  G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R+ E+  + + M R G+ P+V  YN+L+   C    +  A KL   M + G   N  TY+
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI+ + ++  +E AL LF  M   GV+PD  TY  +L+GL Q     AA E++ +    
Sbjct: 551 TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 610

Query: 535 DVMLARSILSTFMISLCR 552
              +  S  +  +  LC+
Sbjct: 611 GTQIELSTYNIILHGLCK 628



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 183/433 (42%), Gaps = 8/433 (1%)

Query: 138 AFSVFNEV-KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           A S +N + +   +++ P++C    L+      G +D        +  +G     I F  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-- 252
            +   C + +    + ++   R  E   I       +++ G C   R +EA ++L  +  
Sbjct: 128 LLKGLCADKRTSDAMDIVLR-RMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 253 -RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
            R     PD ++Y  V   F   G   +      +    G+ P    Y   I  L   + 
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + +A E+   +V      D    N+++ G  SS  P+ AI F   M   G  P + T S 
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LCK  +  E  +++  ++      ++ +Y  ++    T G L E +G++  M R G
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + PD   ++ L+ A  ++  +  A  ++ +M   G + N  TY  +I    + G +E A+
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
             F  M+++G++P    Y SL+ GLC     + A E+  + ++  + L     ++ + S 
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486

Query: 551 CRRGHFLVATKLL 563
           C+ G  + + KL 
Sbjct: 487 CKEGRVIESEKLF 499



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 207/489 (42%), Gaps = 21/489 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SIL     S Q       LK+++ + +  D   Y  ++  L +     +A  +F+ 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      + PEI    +LL   A+ G +     + D M   G+      F + I  + + 
Sbjct: 327 MTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384

Query: 203 AKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            K+ Q + +  ++R++    N++  G+VI +L     CK  RVE+A    +++      P
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL-----CKSGRVEDAMLYFEQMIDEGLSP 439

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             I Y  +             E ++ +    G+   T  +   I     E R+ E+++L 
Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E++V      +    N LI G   +     A+   + M+  G  P   T S L    CK 
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           ++ ++ + ++K + ++    D+ +YN+++  L  + R   A  +   +   G   ++S Y
Sbjct: 560 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLK----TYNILISKFSEVGEIEGALRLFH 494
           N ++   C+  L   A     QMF + C  +LK    T+NI+I    +VG  + A  LF 
Sbjct: 620 NIILHGLCKNKLTDDAL----QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
                G+ P+  TY  + E +  +  L+   ++F    ++   +   +L+  +  L +RG
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735

Query: 555 HFLVATKLL 563
               A   L
Sbjct: 736 EITRAGTYL 744



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 10/284 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M E G +P + + + L K 
Sbjct: 110 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTELGCIPNVFSYNILLKG 167

Query: 375 LCKRNKSDELVEVYKVLS---ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
           LC  N+S E +E+  +++         D+ SY  +++     G   +AY    EM  +G+
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV  YNS++ A C+   +  A ++ + M  +G   +  TYN ++  +   G+ + A+ 
Sbjct: 228 LPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 287

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
               M   GV PD  TY+ L++ LC+      A ++F+      +    +   T +    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 552 RRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
            +G  +    LL  +  +  H D +V  IL+ + A   +V+ A+
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 188/434 (43%), Gaps = 8/434 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  D  V+  +I +  +     +A  VF+++
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +    +       +++ +L   G +++A+  F++M   G+    I +   I   C   K 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAY 264
            +   ++ E+  R   +   ++    II   CK  RV E+ K+  EL +R   KP+ I Y
Sbjct: 458 ERAEELILEMLDR--GICLNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITY 514

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   + L G + E   +L     +G+ P T  Y   I G     R+ +A  L + + S
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              + D    N ++ G   +    +A   +  + E G    LST + +   LCK   +D+
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++++ L   D   +  ++N+M+  L   GR  EA  +       GL P+   Y  + E
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
               + LL    +L+  M  +GC+ +    N ++ +  + GEI  A      + EK  + 
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 754

Query: 504 DATT---YTSLLEG 514
           +A+T   +  LL G
Sbjct: 755 EASTASLFIDLLSG 768


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 1/300 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+   CK KR+++A   ++E+  R  KPD   Y  V         V E  ++ +K  K  
Sbjct: 15  IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 74

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           + P    Y   I GL    RI  A EL + +    +   +   N LI G     D  +A 
Sbjct: 75  INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 134

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F+ M+    VP + T + L   L K  K     EV   +       ++ +Y+ ++   
Sbjct: 135 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   R+ EA+ ++++M  +G+ P V  YN L+ + CR D L  A KL+  M    C   +
Sbjct: 195 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 254

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN L+       +++GA RL+  M+ KG  PDA TY +L  GL +   +  A E+  K
Sbjct: 255 VTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEK 314



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 31/290 (10%)

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           G IVER +C+ K            IDD +      +   I P + I  +NF++       
Sbjct: 13  GPIVER-LCKTKR-----------IDDALATVEEMATRGIKPDAFI--YNFVLS------ 52

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
                     LC+  K +E   +++ +       ++ +YN +++ LC + R+  AY + +
Sbjct: 53  ---------GLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFK 103

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM  KG  P    YN+L++  C++  L  AK ++D+M  S C  N+ TY  LI   S+ G
Sbjct: 104 EMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSG 163

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           +++ A  +   M++KGV P+  TY+ L++G C+   +  A ++  + V   +       +
Sbjct: 164 KVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYN 223

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
             + SLCR      A KL RG++    H    ++  LL++L   ++++ A
Sbjct: 224 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGA 273



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ID+AL   +EM+ RG++     +   +   C+  K+ +   + +++ K+    IN +V+ 
Sbjct: 25  IDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR---INPNVVT 81

Query: 230 V-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +I+G CK  R+E A+++  E+  +   P  ++Y  + + F     +   + V  K  
Sbjct: 82  YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMV 141

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
           +    P    Y   I GL                 SGK     +VL+             
Sbjct: 142 RSNCVPNVVTYTTLIDGLSK---------------SGKVQAAAEVLDG------------ 174

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
                  M++KG  P ++T S L    CK  + DE  ++ + +        + +YN++++
Sbjct: 175 -------MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLN 227

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC + +L +A+ + + M ++   P V  YN+L+ A C    L  A +L+ +M A GC  
Sbjct: 228 SLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPP 287

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNM 496
           +  TY+ L    +  G++  A  L   M
Sbjct: 288 DAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +Y  +V  LC + R+ +A   ++EM  +G+ PD   YN ++   C+E+ +  A+ L+
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M     + N+ TYN LI+   +   IE A  LF  M  KG  P   +Y +L++G C++
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +L AA +VF+K V  + +      +T +  L + G    A ++L G+
Sbjct: 128 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGM 175



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T   + + LCK  + D+ +   + ++      D   YN ++S LC   ++ EA  +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            ++M ++ ++P+V  YN+L+   C+   +  A +L+ +M   G      +YN LI  F +
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             ++  A  +F  M+     P+  TYT+L++GL +   +QAA EV +  V   V    + 
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 543 LSTFMISLCR-----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
            S  +   C+       H L+   + +G++  +    ++ ILL SL  A ++E A +  +
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVV---TYNILLNSLCRADKLEDAFKLFR 243

Query: 598 WIQE--SSPTML 607
            + +    PT++
Sbjct: 244 GMAQRRCHPTVV 255



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 42/352 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+Y  I++ L  +++I+   + ++++    I  D+ +Y F++  L Q +  ++A  +F  
Sbjct: 10  LTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFE- 68

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + I P +   N+L+  L     I+ A ++F EM+ +G   + + +          
Sbjct: 69  -KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY---------- 117

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                            N++I+G          FCK K +  A  V D++    C P+ +
Sbjct: 118 -----------------NTLIDG----------FCKKKDLVAAKDVFDKMVRSNCVPNVV 150

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +     G V     VL    K GV P    Y   I G    RR+ EA +L E +
Sbjct: 151 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 210

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           V+          N L+ S+   D    A   F  M ++   PT+ T + L + LC   + 
Sbjct: 211 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 270

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           D    +Y  + A     D  +Y+ +   L  +G++ EA  ++++MK    +P
Sbjct: 271 DGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 322


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/505 (22%), Positives = 216/505 (42%), Gaps = 59/505 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           SVL +V       D++ +  +I  L ++ K ++    V   V+  C+   P +   NS++
Sbjct: 121 SVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQ---PNVVTYNSIV 177

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             +   G    AL +  +M  R V+     +   I   C +  +   +S+  E+   E  
Sbjct: 178 NGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETK 234

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I  S++    ++ G CK  +  +  ++L ++  R+  P+ I + ++ + F   G + E 
Sbjct: 235 GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEA 294

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             + K+    G++P T  Y   + G  ++ R+ EA  +                      
Sbjct: 295 NELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM---------------------- 332

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                        + M+     P + T ++L K  CK  + DE +++++ +S      + 
Sbjct: 333 ------------LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANT 380

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+++V   C SG+L  A  + QEM   G+ PDV  Y  L++  C    L  A ++++ 
Sbjct: 381 VTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +  S  + ++  Y I+I    + G++E A  LF ++  KGV P+  TYT ++ GLC++ +
Sbjct: 441 LQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 500

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580
           L  A  +  K             +T + +  R G    + KL+  + S  G S       
Sbjct: 501 LSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS-CGFS------- 552

Query: 581 KSLADAREVEMAIEHIK----WIQE 601
              ADA  ++M I+ +     W +E
Sbjct: 553 ---ADASSIKMVIDMLSSAVWWFKE 574



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 198/428 (46%), Gaps = 11/428 (2%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A+ +F EM       S + F  F   F   A   Q   +LD  +K E + I  ++  +
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRF---FSGVASTKQFNLVLDFCKKMELNGIAHNIYTL 103

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ FC+  +   A+ VL ++     +PD   +  +     L   V E  V++ +  +
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G  P    Y   + G+        A +L   +       D    + +I S+     ID 
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID- 222

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +AI  F  M  KG   +L T ++L   LCK  K ++ V++ K +++     ++ ++NV+
Sbjct: 223 -AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVL 281

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L+EA  + +EM  KG+ P+   YNSLM+  C ++ L  A  + D M  + C
Sbjct: 282 IDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNC 341

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S ++ T+  LI  + +V  ++  ++LF  + ++G+  +  TY+ L++G CQ   L+ A E
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEE 401

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
           +F + V+  V+         +  LC  G    A ++   L     + D   + I+++ + 
Sbjct: 402 LFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMC 461

Query: 585 DAREVEMA 592
              +VE A
Sbjct: 462 KGGKVEDA 469



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 111/229 (48%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    AI  F  MI    +P+L   S     +    + + +++  K +  N    +
Sbjct: 40  GIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHN 99

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + N+M++  C   +   AY V+ ++ + G +PD + +N+L+   C E  +  A  L  
Sbjct: 100 IYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVA 159

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M  +GC  N+ TYN +++   + G+   AL L   M E+ V  D  TY+++++ LC++ 
Sbjct: 160 RMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDG 219

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            + AA  +F +     +  +    ++ +  LC+ G +    +LL+ ++S
Sbjct: 220 CIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTS 268


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 162/347 (46%), Gaps = 5/347 (1%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLD 250
           +G  I   C++ KL + +++ D++++   + +  S++    ++ G+C+  R++EA K+  
Sbjct: 398 YGCLIHWLCKHQKLHEAVNLWDKMKE---AGVKPSIVTYHSLLLGYCEKGRMDEALKLYS 454

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +   P+ + Y  + + +    +      +L + R+ GV+     Y   I GL +  
Sbjct: 455 EMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVN 514

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+CE  E+ +  +S  F       N++I G V +    SA   +  M +KG  P + T +
Sbjct: 515 RVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYT 574

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           +     C+ N  D  V++   +  +    D+ +YN  +   C  G +  A   +  + + 
Sbjct: 575 SFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKD 634

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL PDV+ YNS +       ++  A K +  M       + + Y  LI  FS+VG +  A
Sbjct: 635 GLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFA 694

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           L L+  M+   V PD  T+T+L  GLC+  ++  A  + +     DV
Sbjct: 695 LELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDV 741



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 171/402 (42%), Gaps = 14/402 (3%)

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           +G +  AL +FDE+   GV  + + +GV I K C+         M DE  K    MI   
Sbjct: 304 NGEVGKALDLFDEVVSDGVTPTNVTYGVLI-KGCDAE------GMTDETYKLCRQMIEQG 356

Query: 227 VIAV-----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           ++       L+I G  + KR ++A  +L +L +    PD   Y  +         + E  
Sbjct: 357 LLPSTYEFNLVIKGLLRDKRWKDAIGLL-KLVVDTGVPDVFTYGCLIHWLCKHQKLHEAV 415

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
            +  K ++ GV P    Y   +LG   + R+ EA +L   +    F  ++     L+ G 
Sbjct: 416 NLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGY 475

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +      +A    N M + G      T + L   L   N+  E+ E+ K   +  +    
Sbjct: 476 IKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTT 535

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +YN +++    +G +  A+G+ ++M++KG+ P++  Y S ++  CR +    A KL   
Sbjct: 536 MTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIY 595

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +   G   ++  YN  I  F + G +  AL     +L+ G+ PD T Y S + G      
Sbjct: 596 VRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKM 655

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           +  A + +   +   V+    I +T +    + G+   A +L
Sbjct: 656 MAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALEL 697



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/477 (20%), Positives = 206/477 (43%), Gaps = 18/477 (3%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D+ +Y  +I + ++G     A  +F+E+          +    ++ L      D AL++ 
Sbjct: 184 DAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVL 243

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            +M   G E   + +   +    +  ++ + L + D++       ++  V+A +++HG+C
Sbjct: 244 GKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMD-VVLATMLMHGYC 302

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
               V +A  + DE+      P  + Y ++ +     G   E   + ++  + G+ P T 
Sbjct: 303 LNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTY 362

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
           ++   I GL+ ++R  +A  L +++V      D      LI  +        A+  ++ M
Sbjct: 363 EFNLVIKGLLRDKRWKDAIGLLKLVVDTGVP-DVFTYGCLIHWLCKHQKLHEAVNLWDKM 421

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            E G  P++ T  +L    C++ + DE +++Y  +    +  +  +Y  ++         
Sbjct: 422 KEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAF 481

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
             AY ++ EM++ G+      YN L+      + +    ++  +  + G      TYN +
Sbjct: 482 DNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSI 541

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE----VFNKSV 532
           I+ F + G +  A  ++  M +KG+ P+  TYTS ++G C+      A +    V    +
Sbjct: 542 INGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGI 601

Query: 533 NHDVMLARSILSTFMISLCRRG------HFLVATKLLRGLSSDLGHSDSHVILLKSL 583
             D+    + + TF    C++G      HFLV   L  GL+ D+   +S V   K+L
Sbjct: 602 QPDIAAYNAFIDTF----CKQGNMSRALHFLVLL-LKDGLTPDVTVYNSFVTGYKNL 653



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 183/437 (41%), Gaps = 18/437 (4%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S   ++ ++K L   ++      +LK V V+    D   Y  +I  L + +   +A +++
Sbjct: 360 STYEFNLVIKGLLRDKRWKDAIGLLKLV-VDTGVPDVFTYGCLIHWLCKHQKLHEAVNLW 418

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +++K     + P I   +SLL      G +D ALK++ EM  +G   + + +   +  + 
Sbjct: 419 DKMKE--AGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYI 476

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +        ++L+E+R  +N +  G     ++I+G     RV E  ++L         P 
Sbjct: 477 KKKAFDNAYALLNEMR--QNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPT 534

Query: 261 FIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            + Y  +   F    +MGS F    + ++ RK G+ P    Y  FI G    R  C    
Sbjct: 535 TMTYNSIINGFVKAGMMGSAFG---MYRQMRKKGITPNIVTYTSFIDGYC--RTNCCDLA 589

Query: 318 LGEVIVSGKFTIDDDV--LNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +  +I   +  I  D+   NA I +       S A+ F   +++ G  P ++  ++    
Sbjct: 590 VKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                   E  + Y  +       D E Y  ++      G +  A  +  EM    + PD
Sbjct: 650 YKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPD 709

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              + +L    CR   +  AK+L D M     S N+ TYN+LI+     G+++ A +L  
Sbjct: 710 DKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHD 769

Query: 495 NMLEKGVAPDATTYTSL 511
            ML  GV PD TTY  L
Sbjct: 770 EMLSSGVVPDDTTYDIL 786



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 35/391 (8%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           + P ++T+HSL LG+                     ++L L  ++       K    N++
Sbjct: 426 VKPSIVTYHSLLLGYCEKGRMD--------------EALKLYSEMPD-----KGFPPNEV 466

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T     Y  ++   I+ K    A+++ NE++ N    G    N L+  L    Y+ N + 
Sbjct: 467 T-----YTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGL----YMVNRVC 517

Query: 176 MFDEMSHR----GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
             DEM  R    G   +T+ +   I  F +   +G    M  ++RK+   +    V    
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKK--GITPNIVTYTS 575

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
            I G+C+    + A K+L  +R    +PD  AY    + F   G++      L    K G
Sbjct: 576 FIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDG 635

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
           + P    Y  F+ G    + + EA +    ++  +   D ++   LI   S +   + A+
Sbjct: 636 LTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFAL 695

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             ++ M+    +P   T + L+  LC+    D    +   +   D   ++ +YN++++  
Sbjct: 696 ELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINAC 755

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
              G+L+EA+ +  EM   G+ PD + Y+ L
Sbjct: 756 VRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +  EM+ KG   D   Y+ ++ AC R  +   A +L+D+M  +G   + + Y I I
Sbjct: 168 DALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITI 227

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV----- 532
           S   ++ + + AL++   M E G  P   TY+S+++ L +   +  A  + ++ +     
Sbjct: 228 SGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGK 287

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             DV+LA    +  M   C  G    A  L   + SD
Sbjct: 288 KMDVVLA----TMLMHGYCLNGEVGKALDLFDEVVSD 320



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 45/105 (42%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G+ PD      L+           A  L+D+M   GC  + K Y+++I      G 
Sbjct: 141 MVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGM 200

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              A+RLF  M   GV PD   Y   + GLC+  +   A +V  K
Sbjct: 201 HCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGK 245



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 1/185 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           ++ M+ +G VP   + ++L         + + + ++  +     + D + Y+V++     
Sbjct: 138 YSRMVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVR 197

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G   +A  +  EM   G+ PD   Y   +   C+      A ++  +M  +G      T
Sbjct: 198 GGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELT 257

Query: 473 YNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           Y+ ++    +V  ++ ALRL   M L  G   D    T L+ G C    +  A ++F++ 
Sbjct: 258 YSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEV 317

Query: 532 VNHDV 536
           V+  V
Sbjct: 318 VSDGV 322


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 218/528 (41%), Gaps = 43/528 (8%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 103 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYN 162

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS---DGYIDNALKMFDEM 180
            ++  L     +Q+A  + + +  +     P    S   V+     +G  D A   + EM
Sbjct: 163 ILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEM 222

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             RG+    + +   I   C+   + + + +L+ + K  N ++   +    I+HG+C   
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK--NGVMPDCMTYNSILHGYCSSG 280

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           + +EA   L ++R    +PD + Y ++ +     G   E   +     K G+ P    Y 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---------------------- 338
             + G   +  + E   L +++V      D  V + LI                      
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQ 400

Query: 339 ---------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                    G+V  I  +S     A+++F  MI++G  P     ++L   LC  NK +  
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+   +       +   +N ++   C  GR+ E+  + + M R G+ P+V  YN+L+  
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C    +  A KL   M + G   N  TY+ LI+ + ++  +E AL LF  M   GV+PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             TY  +L+GL Q     AA E++ +       +  S  +  +  LC+
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 182/433 (42%), Gaps = 8/433 (1%)

Query: 138 AFSVFNEV-KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           A S +N + +   +++ P++C    L+      G +D        +  +G     I F  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-- 252
            +   C + +    + ++   R  E   I       +++ G C   R +EA ++L  +  
Sbjct: 128 LLKGLCADKRTSDAMDIVLR-RMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 253 -RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
            R     PD ++Y  V   F   G   +      +    G+ P    Y   I  L   + 
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           + +A E+   +V      D    N+++ G  SS  P+ AI F   M   G  P + T S 
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LCK  +  E  +++  ++      ++ +Y  ++    T G L E +G++  M R G
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + PD   ++ L+ A   +  +  A  ++ +M   G + N  TY  +I    + G +E A+
Sbjct: 367 IHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
             F  M+++G++P    Y SL+ GLC     + A E+  + ++  + L     ++ + S 
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486

Query: 551 CRRGHFLVATKLL 563
           C+ G  + + KL 
Sbjct: 487 CKEGRVIESEKLF 499



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 206/489 (42%), Gaps = 21/489 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SIL     S Q       LK+++ + +  D   Y  ++  L +     +A  +F+ 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +      + PEI    +LL   A+ G +     + D M   G+      F + I  +   
Sbjct: 327 MTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQ 384

Query: 203 AKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            K+ Q + +  ++R++    N++  G+VI +L     CK  RVE+A    +++      P
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL-----CKSGRVEDAMLYFEQMIDEGLSP 439

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             I Y  +             E ++ +    G+   T  +   I     E R+ E+++L 
Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E++V      +    N LI G   +     A+   + M+  G  P   T S L    CK 
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           ++ ++ + ++K + ++    D+ +YN+++  L  + R   A  +   +   G   ++S Y
Sbjct: 560 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLK----TYNILISKFSEVGEIEGALRLFH 494
           N ++   C+  L   A     QMF + C  +LK    T+NI+I    +VG  + A  LF 
Sbjct: 620 NIILHGLCKNKLTDDAL----QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
                G+ P+  TY  + E +  +  L+   ++F    ++   +   +L+  +  L +RG
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735

Query: 555 HFLVATKLL 563
               A   L
Sbjct: 736 EITRAGTYL 744



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 131/284 (46%), Gaps = 10/284 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M E G +P + + + L K 
Sbjct: 110 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTELGCIPNVFSYNILLKG 167

Query: 375 LCKRNKSDELVEVYKVLS---ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
           LC  N+S E +E+  +++         D+ SY  +++     G   +AY    EM  +G+
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PDV  YNS++ A C+   +  A ++ + M  +G   +  TYN ++  +   G+ + A+ 
Sbjct: 228 LPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 287

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
               M   GV PD  TY+ L++ LC+      A ++F+      +    +   T +    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 552 RRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
            +G  +    LL  +  +  H D +V  IL+ + A+  +V+ A+
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAM 391



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 187/434 (43%), Gaps = 8/434 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  D  V+  +I +        +A  VF+++
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKM 397

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +    +       +++ +L   G +++A+  F++M   G+    I +   I   C   K 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAY 264
            +   ++ E+  R   +   ++    II   CK  RV E+ K+  EL +R   KP+ I Y
Sbjct: 458 ERAEELILEMLDR--GICLNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITY 514

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +   + L G + E   +L     +G+ P T  Y   I G     R+ +A  L + + S
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              + D    N ++ G   +    +A   +  + E G    LST + +   LCK   +D+
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++++ L   D   +  ++N+M+  L   GR  EA  +       GL P+   Y  + E
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
               + LL    +L+  M  +GC+ +    N ++ +  + GEI  A      + EK  + 
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 754

Query: 504 DATT---YTSLLEG 514
           +A+T   +  LL G
Sbjct: 755 EASTASLFIDLLSG 768


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 162/347 (46%), Gaps = 5/347 (1%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLD 250
           +G  I   C++ KL + +++ D++++   + +  S++    ++ G+C+  R++EA K+  
Sbjct: 398 YGCLIHWLCKHQKLHEAVNLWDKMKE---AGVKPSIVTYHSLLLGYCEKGRMDEALKLYS 454

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E+  +   P+ + Y  + + +    +      +L + R+ GV+     Y   I GL +  
Sbjct: 455 EMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVN 514

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           R+CE  E+ +  +S  F       N++I G V +    SA   +  M +KG  P + T +
Sbjct: 515 RVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYT 574

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           +     C+ N  D  V++   +  +    D+ +YN  +   C  G +  A   +  + + 
Sbjct: 575 SFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKD 634

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL PDV+ YNS +       ++  A K +  M       + + Y  LI  FS+VG +  A
Sbjct: 635 GLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFA 694

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           L L+  M+   V PD  T+T+L  GLC+  ++  A  + +     DV
Sbjct: 695 LELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDV 741



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 170/401 (42%), Gaps = 14/401 (3%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +  AL +FDE+   GV  + + +GV I K C+         M DE  K    MI   +
Sbjct: 305 GEVGKALDLFDEVVSDGVTPTNVTYGVLI-KGCDAE------GMSDETYKLCRQMIEQGL 357

Query: 228 IAV-----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +       L+I G  + KR ++A  +L EL +    PD   Y  +         + E   
Sbjct: 358 LLSTYEFNLVIKGLLRDKRWKDAIGLL-ELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVN 416

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           +  K ++ GV P    Y   +LG   + R+ EA +L   +    F  ++     L+ G +
Sbjct: 417 LWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYI 476

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                 +A    N M + G      T + L   L   N+  E+ E+ K   +  +     
Sbjct: 477 KKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTM 536

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +++    +G +  A+G+ ++M++KG+ P++  Y S ++  CR +    A KL   +
Sbjct: 537 TYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYV 596

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   ++  YN  I  F + G +  AL     +L+ G+ PD T Y S + G      +
Sbjct: 597 RRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMM 656

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
             A + +   +   V+    I +T +    + G+   A +L
Sbjct: 657 AEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALEL 697



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 187/438 (42%), Gaps = 11/438 (2%)

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           +G +   A ++F+E++        ++ + ++      G   +A+++FDEM+  GV+    
Sbjct: 162 RGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDER 221

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
            + + I   C+     + L +L ++R+       +   SV+ VL+  G     R++EA +
Sbjct: 222 VYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVG-----RMDEALR 276

Query: 248 VLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           + D++ +   K  D +   ++   + L G V +   +  +    GV P    Y   I G 
Sbjct: 277 LKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGC 336

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
             E    E  +L   ++     +     N +I G +     + AI     +++ G VP +
Sbjct: 337 DAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTG-VPDV 395

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T   L   LCK  K  E V ++  +        + +Y+ ++   C  GR+ EA  +  E
Sbjct: 396 FTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSE 455

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG  P+   Y +LM+   ++     A  L ++M  +G S    TYNILI+    V  
Sbjct: 456 MPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNR 515

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +     +    L +G  P   TY S++ G  +   + +AF ++ +     +       ++
Sbjct: 516 VCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTS 575

Query: 546 FMISLCRRGHFLVATKLL 563
           F+   CR     +A KLL
Sbjct: 576 FIDGYCRTNCCDLAVKLL 593



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 173/413 (41%), Gaps = 17/413 (4%)

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L ++ V+    D   Y  +I  L + +   +A ++++++K     + P I   +SLL   
Sbjct: 383 LLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKE--AGVKPSIVTYHSLLLGY 440

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
              G +D ALK++ EM  +G   + + +   +  + +        ++L+E+R  +N +  
Sbjct: 441 CEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMR--QNGVSC 498

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KLMGSVFERE 281
           G     ++I+G     RV E  ++L         P  + Y  +   F    +MGS F   
Sbjct: 499 GDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFG-- 556

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV--LNALIG 339
            + ++ RK G+ P    Y  FI G    R  C    +  +I   +  I  D+   NA I 
Sbjct: 557 -MYRQMRKKGITPNIVTYTSFIDGYC--RTNCCDLAVKLLIYVRRDGIQPDIAAYNAFID 613

Query: 340 SVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +       S A+ F   +++ G  P ++  ++            E  + Y  +       
Sbjct: 614 TFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVA 673

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D E Y  ++      G +  A  +  EM    + PD   + +L    CR   +  AK+L 
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLL 733

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           D M     S N+ TYN+LI+     G+++ A +L   ML  GV PD TTY  L
Sbjct: 734 DDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 35/391 (8%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI 115
           + P ++T+HSL LG+                     ++L L  ++       K    N++
Sbjct: 426 VKPSIVTYHSLLLGYCEKGRMD--------------EALKLYSEMPD-----KGFPPNEV 466

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T     Y  ++   I+ K    A+++ NE++ N    G    N L+  L    Y+ N + 
Sbjct: 467 T-----YTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGL----YMVNRVC 517

Query: 176 MFDEMSHR----GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
             DEM  R    G   +T+ +   I  F +   +G    M  ++RK+   +    V    
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKK--GITPNIVTYTS 575

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
            I G+C+    + A K+L  +R    +PD  AY    + F   G++      L    K G
Sbjct: 576 FIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDG 635

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
           + P    Y  F+ G    + + EA +    ++  +   D ++   LI   S +   + A+
Sbjct: 636 LTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFAL 695

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             ++ M+    +P   T + L+  LC+    D    +   +   D   ++ +YN++++  
Sbjct: 696 ELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINAC 755

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
              G+L+EA+ +  EM   G+ PD + Y+ L
Sbjct: 756 VRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +  EM+ KG   D   Y+ ++ AC R  +   A +L+D+M  +G   + + Y I I
Sbjct: 168 DALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITI 227

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV----- 532
           S   ++ + + AL++   M E G  P   TY+S+++ L +   +  A  + ++ +     
Sbjct: 228 SGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGK 287

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             DV+LA    +  M   C  G    A  L   + SD
Sbjct: 288 KMDVVLA----TMLMHGYCLHGEVGKALDLFDEVVSD 320



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G+ PD      L+    R      A  L+D+M   GC  + K Y+++I      G 
Sbjct: 141 MVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGM 200

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
              A+RLF  M   GV PD   Y   + GLC+  +   A +V  K
Sbjct: 201 HCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGK 245



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           ++ M+ +G VP   + ++L     +   + + + ++  +     + D + Y+V++     
Sbjct: 138 YSRMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVR 197

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G   +A  +  EM   G+ PD   Y   +   C+      A ++  +M  +G      T
Sbjct: 198 GGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELT 257

Query: 473 YNILISKFSEVGEIEGALRLFHNM-LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           Y+ ++    +VG ++ ALRL   M L  G   D    T L+ G C    +  A ++F++ 
Sbjct: 258 YSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEV 317

Query: 532 VNHDV 536
           V+  V
Sbjct: 318 VSDGV 322



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 6/219 (2%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L+ +        A+  F+ M  KG          + +   +     + V ++  ++    
Sbjct: 157 LVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGV 216

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D   Y + +S LC       A  V+ +M+  G +P    Y+S+++   +   +  A +
Sbjct: 217 KPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALR 276

Query: 457 LWDQMF-ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           L DQM  A+G   ++    +L+  +   GE+  AL LF  ++  GV P   TY  L++G 
Sbjct: 277 LKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGC 336

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             E      +++  + +   ++     LST+  +L  +G
Sbjct: 337 DAEGMSDETYKLCRQMIEQGLL-----LSTYEFNLVIKG 370


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/458 (21%), Positives = 193/458 (42%), Gaps = 55/458 (12%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  ++      G   N   +F  MS  G   + + +  +I   CE   + Q   +L+E+ 
Sbjct: 219 CTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMV 278

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMG 275
            +   +         +I G CK   +E AF++  +L +    KP+   Y ++   +   G
Sbjct: 279 GK--GLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEG 336

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E++L +  + G+AP TN Y   I G       C+          G F        
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIHGH------CKG---------GSFD------- 374

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        A    N M  +G +P + T + +    CK+ K  E  +V ++ ++  
Sbjct: 375 ------------RAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQG 422

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y ++++  C  G +  A  + ++M  K   PD+  Y +++   C++  +  ++
Sbjct: 423 LHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQ 482

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+D+  + G     +TY  +I+ +  +G++  AL++F  M++ G  PD+ TY +L+  L
Sbjct: 483 QLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSL 542

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-------- 567
           C+E+ L+ A  +F   ++  ++       T     CRR    +A   L  L         
Sbjct: 543 CKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAHTA 602

Query: 568 -------SDLGHSDSHVILLKSLADAREVEMAIEHIKW 598
                  S +G+ D+  + LK++ D      A++H  +
Sbjct: 603 DALVRKLSTVGNLDAASLFLKNVLDK---HYAVDHATY 637



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 144/358 (40%), Gaps = 37/358 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           ++ G C+  R EEA  +L  +  +    D     +V   F   G       + ++  ++G
Sbjct: 187 LVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMG 246

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---------- 341
             P   +Y  +I GL     + +A  + E +V      +     +LI  +          
Sbjct: 247 TPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAF 306

Query: 342 ---------SSIDPR------------------SAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                    SS  P                    A +    M+E+G  P  +T + L   
Sbjct: 307 RLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHG 366

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            CK    D   E+   +    +  ++ +YN ++   C  G+++EAY V++    +GL  D
Sbjct: 367 HCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLD 426

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              Y  L+   C++  +  A  L+ QM    C  ++ TY  +I+ + +  ++E + +LF 
Sbjct: 427 KVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFD 486

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
             L  G+ P   TYTS++ G C+   L +A +VF + V H  +         + SLC+
Sbjct: 487 KCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCK 544



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 12/406 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y   I  L +    ++AF V  E+    + + P +    SL+  L   G+++ A ++F +
Sbjct: 254 YSAWIDGLCERGYVKQAFHVLEEMVG--KGLKPNVYTHTSLIDGLCKIGWMERAFRLFLK 311

Query: 180 MSHRGVEFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           +         +  + V I  +C+  KL +   +L   R  E  +   +     +IHG CK
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLG--RMVEQGLAPNTNTYTTLIHGHCK 369

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           G   + AF++++++++    P+   Y  +   F   G + E   VL+     G+      
Sbjct: 370 GGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVT 429

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMI 357
           Y   I     +  I  A +L + +       D      +I           +   F+  +
Sbjct: 430 YTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCL 489

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G VPT  T +++    C+  K    ++V++ +  +    D  +Y  ++S LC   RL 
Sbjct: 490 SIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLE 549

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  + + M  K L P      +L    CR D +  A    D++          T + L+
Sbjct: 550 EARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQ---QAHTADALV 606

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            K S VG ++ A     N+L+K  A D  TYTS +   C E+N  A
Sbjct: 607 RKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINS-CYESNRYA 651



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 112/282 (39%), Gaps = 38/282 (13%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P   +   L    C+  + +E   +   + A  +  D  +  V+V   C  GR R  
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             + + M   G  P++  Y++ ++  C    ++ A  + ++M   G   N+ T+  LI  
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 480 FSEVGEIEGALRLF------------------------------------HNMLEKGVAP 503
             ++G +E A RLF                                      M+E+G+AP
Sbjct: 296 LCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  TYT+L+ G C+  +   AFE+ NK      +      +  +   C++G    A K+L
Sbjct: 356 NTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVL 415

Query: 564 RGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQESS 603
           R  +S   H D  ++ IL+        +  A++  K + E S
Sbjct: 416 RMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKS 457



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 38/180 (21%)

Query: 413 SGRLREAYGVIQEMKRKGLD--------------------------------------PD 434
           +GRLREA  ++ E++  GL                                       PD
Sbjct: 121 AGRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPD 180

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              + +L+  CCRE     A  L   M+A G   +  T  +++  F   G       LF 
Sbjct: 181 HRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFR 240

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M E G  P+   Y++ ++GLC+   ++ AF V  + V   +       ++ +  LC+ G
Sbjct: 241 RMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIG 300


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 183/417 (43%), Gaps = 47/417 (11%)

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIH 234
           +   MS  G   +   + + +   C+N+   + L +  ++  +E    + +V+A   +IH
Sbjct: 215 LLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLF-QMMAKEGGACSPNVVAYNTVIH 273

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GF K     +A  +  E+  +  KPD + Y ++ +      ++ + E+VL++    G  P
Sbjct: 274 GFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQP 333

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
            T  Y   I G     R+ EA ++                                  F 
Sbjct: 334 DTVTYNCMIHGYATLGRLKEAAKM----------------------------------FR 359

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M  +G +P +   ++   +LCK  +S E  E++  ++A  +  D+ SY  ++    + G
Sbjct: 360 KMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEG 419

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
              +  G+   MK  G+  D   +N L+ A  +  ++  A  ++ +M   G S ++ TY+
Sbjct: 420 WFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYS 479

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            +IS FS +G +  A+  F+ M+ +G+ P+   Y S+++G C    L  A E+ ++ +N 
Sbjct: 480 TVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINK 539

Query: 535 -----DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
                D++   S+++    SLC+ G  + A  +   L +D+G     VI   SL D 
Sbjct: 540 GIPRPDIVFFNSVIN----SLCKDGRVMDAHDIF-DLVTDIGERPD-VITFTSLIDG 590



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/473 (21%), Positives = 204/473 (43%), Gaps = 6/473 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ I+ +L  +R ++  + VL+Q+  N    D+  Y  +I         ++A  +F +
Sbjct: 301 VTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRK 360

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +K         ICNS LA L   G    A ++FD M+ +G +   + +   +  +     
Sbjct: 361 MKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGW 420

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
              ++ + + ++   N +     +  ++IH + K   V++A  +  E++ +   PD + Y
Sbjct: 421 FADMIGLFNSMK--SNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIV 323
             V   F  MG + +      +    G+ P T  Y   I G  +   + +AKEL  E+I 
Sbjct: 479 STVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMIN 538

Query: 324 SGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            G    D    N++I S+   D R   A   F+ + + G  P + T ++L    C   K 
Sbjct: 539 KGIPRPDIVFFNSVINSLCK-DGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKM 597

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D+  ++   +      TD+ +Y+ ++     +GR+ +   + +EM+RKG+ P+   Y  +
Sbjct: 598 DKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIM 657

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +    R      A+K + +M  SG +  +  Y I++         + A+ LF  +    V
Sbjct: 658 LAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNV 717

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
               T   +++  + +    + A E+F       ++   S     +I+L + G
Sbjct: 718 KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDG 770



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/562 (20%), Positives = 228/562 (40%), Gaps = 73/562 (12%)

Query: 21  SNRTRPARKWTPLLEQTLHQLG-LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPN 79
           +NRT  A     +L   + +LG + +  S S++ + +    ++  +L L F   A +   
Sbjct: 205 ANRTEEA---VNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDL-FQMMAKEGGA 260

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
            + + ++Y++++       +     S+  ++    +  D   Y  II +L + +   KA 
Sbjct: 261 CSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAE 320

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            V  ++  N         N ++   A+ G +  A KMF +M  RG+  + +    F+   
Sbjct: 321 LVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASL 380

Query: 200 CENAKLGQVLSMLDEVRKRE----------------------------NSMINGSVIA-- 229
           C++ +  +   + D +  +                             NSM +  + A  
Sbjct: 381 CKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADC 440

Query: 230 ---VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
               ++IH + K   V++A  +  E++ +   PD + Y  V   F  MG + +      +
Sbjct: 441 RVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQ 500

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSID 345
               G+ P T  Y   I G  +   + +AKEL  E+I  G                    
Sbjct: 501 MVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGI------------------- 541

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           PR  IVFFN +I                +LCK  +  +  +++ +++      D+ ++  
Sbjct: 542 PRPDIVFFNSVIN---------------SLCKDGRVMDAHDIFDLVTDIGERPDVITFTS 586

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++   C  G++ +A+ ++  M+  G++ D+  Y++L++   +   +     L+ +M   G
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              N  TY I+++     G    A + FH M+E G     + Y  +L GLC+      A 
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAI 706

Query: 526 EVFNKSVNHDVMLARSILSTFM 547
            +F K    +V  + +IL+T +
Sbjct: 707 ILFQKLGTMNVKFSITILNTMI 728



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/513 (22%), Positives = 216/513 (42%), Gaps = 41/513 (7%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  +I    +   T KA S+F+E+    + + P++   N ++  L     +D A  +  +
Sbjct: 268 YNTVIHGFFKEGETGKACSLFHEMTR--QGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M+  G +  T+ +   I  +    +L +   M  +++ R   +I   VI    +   CK 
Sbjct: 326 MTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSR--GLIPNIVICNSFLASLCKH 383

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            R +EA ++ D +  +  KPD ++Y  +   +   G   +   +    +  G+A     +
Sbjct: 384 GRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVF 443

Query: 300 REFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNAL--IGSVSSIDPRSAIVFF 353
              I        + +A     E+ +  VS        V++A   +G ++      A+  F
Sbjct: 444 NILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTD-----AMEKF 498

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRN---KSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           N M+ +G  P  +   ++ +  C      K+ ELV   ++++      D+  +N +++ L
Sbjct: 499 NQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVS--EMINKGIPRPDIVFFNSVINSL 556

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  GR+ +A+ +   +   G  PDV  + SL++  C    +  A K+ D M   G   ++
Sbjct: 557 CKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  + + G I   L LF  M  KGV P+  TY  +L GL +     AA + F++
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVE 590
            +     +  SI    +  LCR                    +D  +IL + L     V+
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRN-----------------NCADEAIILFQKLG-TMNVK 718

Query: 591 MAIEHIK-WIQESSPTMLQEISAELFASLSSSS 622
            +I  +   I        +E + ELFA++S+S 
Sbjct: 719 FSITILNTMINAMYKVQRKEEAKELFATISASG 751



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR-LF 493
           V  Y+ LM+ CCR         L+  +  +G   +  T + L+         E A+  L 
Sbjct: 157 VHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLL 216

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           H M E G  P+  +Y+ +L+GLC  +  Q A ++F
Sbjct: 217 HRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLF 251


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/481 (20%), Positives = 206/481 (42%), Gaps = 30/481 (6%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDN 172
           + L+   Y  +I +L +       F +  E+      + P +   N L+  L   G ++ 
Sbjct: 7   VALNEYSYTAMIKALCKAGKVDAGFEMLAELWR--AGLQPTVVTYNVLMDALCKSGRVEE 64

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A ++   M   G+  S + FG+ I       + G+V  +L E+ +   S     VI   +
Sbjct: 65  AFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVS--PNEVIYNEL 122

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I   C+     +A ++ DE+ +++ KP  + Y ++A+     G +   E +L+    +G+
Sbjct: 123 IGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGM 182

Query: 293 APRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
                 +   +  L+   RR+     +   +V+     +D ++ A +  +         V
Sbjct: 183 TVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAV 242

Query: 352 FFNF------------------MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
              F                  M+ KG      T + + +  CK +K +E ++++  ++ 
Sbjct: 243 GIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTR 302

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
             +  D+ ++N ++   C  G++ E + ++ +MK +GL PD+  Y ++++  C+   +R 
Sbjct: 303 RGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRK 362

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           AK+   ++   G   N+  YN LI  +   G+I GA+     M   G+ P   TY SL+ 
Sbjct: 363 AKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMY 422

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSS 568
            +C    ++ A  +F+++  ++V L     +  +   C+ G  + A         RG+S 
Sbjct: 423 WMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISP 482

Query: 569 D 569
           +
Sbjct: 483 N 483



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 116/297 (39%), Gaps = 7/297 (2%)

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           +L +GK  ++A  V   +     ++     N ++     D  ++ A+K+  +M+ RG + 
Sbjct: 248 TLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKP 307

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
               F   +  +C   K+ +   +LD+++     +    V    II G CK K + +A +
Sbjct: 308 DLFTFNTLLHAYCNLGKMEETFHLLDQMKTE--GLQPDIVSYGTIIDGHCKAKDIRKAKE 365

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
            L EL  R  KP+   Y  +   +   G +      ++  +  G+ P    Y   +  + 
Sbjct: 366 YLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMC 425

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPT 364
               + EAK +     + +  +D  V+   I   G         A+ +F  M  +G  P 
Sbjct: 426 HAGLVEEAKTI--FSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPN 483

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
             T + L     K   S+E  +++  +  +    D  +Y  +++     G     YG
Sbjct: 484 KLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGGKTTQYG 540


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 209/456 (45%), Gaps = 23/456 (5%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA--SDGYIDNALKMFDEMS 181
            ++ SL++     K++ VF+     C+ + P++     A+ A    G + +A+ +F +M 
Sbjct: 226 LLLSSLVKANELHKSYEVFD---LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKME 282

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGK 240
             GV  + + +   I    ++ +  + L   D + +   S +N SV+   ++I G  K +
Sbjct: 283 GLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVR---SKVNPSVVTYGVLISGLMKLE 339

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
             EEA +VL E+      P+ + +  + + +   G + E   V  +    G+ P    + 
Sbjct: 340 MFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFN 399

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-------GSVSSIDPRSAIVFF 353
             + G     ++ +A+++   I+S   +++ DV + +I       G VS++   + ++  
Sbjct: 400 TLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSG 459

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV-YKVLSANDYFTDMESYNVMVSFLCT 412
           N  +        S L+ L   LCK     E +E+ +K+ +      +  + N ++  LC 
Sbjct: 460 NIRVSD------SLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCE 513

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G + E + V+++M  KGL  D   YN+L+  CC+   +  A KL ++M       +  T
Sbjct: 514 RGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYT 573

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L+   +++G+I+   RL H   E G  P+  TY  LLEG C+   ++ A + F    
Sbjct: 574 YNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLD 633

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
              V L+  + +  + + CR G+   A KL   + S
Sbjct: 634 YEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKS 669



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 201/457 (43%), Gaps = 43/457 (9%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PNF    ++++++L+    S Q+   + VL  +  + ++++  V  ++I  L++     
Sbjct: 392 KPNF----VTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFV 447

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLAS-DGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            A  +  ++      +   +   L+  L   +G+ +     F   + +G+  +T+     
Sbjct: 448 SALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNAL 507

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +   CE   + +V  +L ++   E  ++   +    +I G CK  ++EEAFK+ +E+  +
Sbjct: 508 LHGLCERGNMEEVFEVLKQML--EKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQ 565

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
           E +PD   Y  + +    MG + +   +L + ++ G  P    Y   + G     RI +A
Sbjct: 566 EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDA 625

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            +  + +   K  +   V N LI +   I +   A    + M  +G +PT +T       
Sbjct: 626 VKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCAT------- 678

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                                       Y+ ++  +C  GR+ EA  + +EM+ +GL P+
Sbjct: 679 ----------------------------YSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPN 710

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L+   C+   +     +  +M ++G   N  TY I+I  + ++G ++ A  L +
Sbjct: 711 VFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLN 770

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            M+  G+APD  TY +L +G C+E  L    +  +KS
Sbjct: 771 EMIRNGIAPDTVTYNALQKGYCKERELTVTLQSDHKS 807



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 115/528 (21%), Positives = 216/528 (40%), Gaps = 64/528 (12%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           S++K+  L +     D   + V  +  T  +++  F      +G     A  +F ++   
Sbjct: 230 SLVKANELHKSYEVFDLACQGVAPDVFTFTTAINAFC-----KGGRVGDAVDLFCKM--- 281

Query: 149 CEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            E +G  P +   N+++  L   G  + AL+  D M    V  S + +GV I    +   
Sbjct: 282 -EGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMK--- 337

Query: 205 LGQVLSMLDEVRKRENSMIN-----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
               L M +E  +    M +       V+   +I G+C+   + EA +V DE+ ++  KP
Sbjct: 338 ----LEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKP 393

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR-ICEAKEL 318
           +F+ +  + + F     + + E VL      G++    D   +++  ++ER     A ++
Sbjct: 394 NFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNM-DVCSYVIHRLMERSGFVSALKI 452

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV--FFNFMIEKGRVPTLSTLSNLSKNLC 376
              ++SG   + D +L  L+  +   +  S  +  +F     KG      T + L   LC
Sbjct: 453 VTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLC 512

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +R   +E+ EV K +       D  SYN ++   C  G++ EA+ + +EM ++   PD  
Sbjct: 513 ERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTY 572

Query: 437 FYNSLM-----------------------------------EACCREDLLRPAKKLWDQM 461
            YN LM                                   E  C+ D +  A K +  +
Sbjct: 573 TYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNL 632

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                  +   YNILI+ +  +G +  A +L   M  +G+ P   TY+SL+ G+C    +
Sbjct: 633 DYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRV 692

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             A E+F +  N  ++      +  +   C+ G   +   +L  +SS+
Sbjct: 693 DEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSN 740



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 196/448 (43%), Gaps = 41/448 (9%)

Query: 129 LIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           LI G    + F   NEV      +G  P   + N+L+      G +  AL++ DEM+ +G
Sbjct: 331 LISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKG 390

Query: 185 VEFSTIGFGVFIWKFCENAKLGQV--------------------------------LSML 212
           ++ + + F   +  FC + ++ Q                                 +S L
Sbjct: 391 MKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSAL 450

Query: 213 DEVRK--RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAE 269
             V K    N  ++ S++  L++ G CK +   EA ++  +L  ++    + +    +  
Sbjct: 451 KIVTKLLSGNIRVSDSLLTPLVV-GLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLH 509

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                G++ E   VLK+  + G+      Y   I G     +I EA +L E +V  +F  
Sbjct: 510 GLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQP 569

Query: 330 DDDVLNALIGSVSSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D    N L+  ++ +     +    +   E G VP + T + L +  CK ++ ++ V+ +
Sbjct: 570 DTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFF 629

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           K L           YN++++  C  G + EA+ +   MK +G+ P  + Y+SL+   C  
Sbjct: 630 KNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCI 689

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  AK+++++M   G   N+  Y  LI    ++G+++    +   M   G+ P+  TY
Sbjct: 690 GRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITY 749

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           T +++G C+  N++ A E+ N+ + + +
Sbjct: 750 TIMIDGYCKLGNMKEARELLNEMIRNGI 777



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 143/385 (37%), Gaps = 71/385 (18%)

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           HS A+  +   +       + ++ +++L  L     +  +  VLKQ+    + LD   Y 
Sbjct: 481 HSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISY- 539

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
                              N + F C                  G I+ A K+ +EM  +
Sbjct: 540 -------------------NTLIFGC---------------CKWGKIEEAFKLKEEMVQQ 565

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
             +  T  +   +    +  K+  V  +L E   +E   +       L++ G+CK  R+E
Sbjct: 566 EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEA--KEYGFVPNVYTYALLLEGYCKADRIE 623

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A K    L   + +   + Y I+   +  +G+V E   +    +  G+ P    Y   I
Sbjct: 624 DAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLI 683

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
            G+    R+ EAKE+                                  F  M  +G +P
Sbjct: 684 HGMCCIGRVDEAKEI----------------------------------FEEMRNEGLLP 709

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            +   + L    CK  + D +  +   +S+N    +  +Y +M+   C  G ++EA  ++
Sbjct: 710 NVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELL 769

Query: 424 QEMKRKGLDPDVSFYNSLMEACCRE 448
            EM R G+ PD   YN+L +  C+E
Sbjct: 770 NEMIRNGIAPDTVTYNALQKGYCKE 794


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 125/596 (20%), Positives = 262/596 (43%), Gaps = 35/596 (5%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F+   +  +F     +++S++++ + S   N+++ VL ++++         +  +  +  
Sbjct: 59  FSSPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYG 118

Query: 131 QGKNTQKAFSVFNEVKFN--CEDIGPEICNSLLAVLASDGYIDNALKMFDEM---SHRGV 185
           +     KA  +F  + F   C+       NS+L V+   G+ D AL+ ++ +       +
Sbjct: 119 KAHLPNKAIELFYRMSFEFYCKPTVKSF-NSVLNVIIQAGFHDRALEFYNHVVGAKDMNI 177

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
             + + F + I   C+   +   + +  E+  R+   +  +     ++ G CK  R++EA
Sbjct: 178 LPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRK--CVPDAYTYCTLMDGLCKVDRIDEA 235

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFIL 304
             +LDE++I  C P    + ++       G  F R   L     L G  P    Y   I 
Sbjct: 236 VSLLDEMQIEGCFPSPATFNVLINGLCKKGD-FTRVTKLVDNMFLKGCVPNEVTYNTLIH 294

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDD----DVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
           GL ++ ++ +A  L + +VS K   ++     ++N L+    ++D    +V    M E+G
Sbjct: 295 GLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVL---MEERG 351

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +      S L   L K  KS+E + ++K         +   Y+ +V  LC   +  EA 
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAM 411

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ EM  KG  P+   ++SLM+          A ++W  M    C+ N   Y++LI   
Sbjct: 412 KILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGL 471

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            + G++  A+ ++  ML  G  PD   Y+S+++GLC   +++ A +++N+ +  +     
Sbjct: 472 CKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQP 531

Query: 541 SILSTFMI--SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADARE----- 588
            +++  ++  +LC++     A  LL     RG   DL   +  + +L+   D  +     
Sbjct: 532 DVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAKF 591

Query: 589 -VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLL-----LHALQEKC 638
             E+ +  +K  +    + + E+  + F S  +S++   +  L     + A+ +KC
Sbjct: 592 LDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKIQAVIDKC 647


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 214/503 (42%), Gaps = 38/503 (7%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           +DS LK+ + +K+ +           L++   T+ +  + N+V  N    G         
Sbjct: 244 LDSFLKEGRNDKVAM-----------LLKEMETRGSGCLPNDVTHNVVITG--------- 283

Query: 163 VLASDGYIDNALKMFDEM--SHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
            LA  G ++ A +M + M  S +   F+   +  G+    F + A   Q+        + 
Sbjct: 284 -LARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQL--------EM 334

Query: 219 ENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           EN  I  +V+    +IHG  +  +VE A     E+R    +PD I Y  +   +   GS+
Sbjct: 335 ENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSL 394

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E  ++    R  G+AP    Y   I G      + EA+ L E +V      D      L
Sbjct: 395 KEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTIL 454

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + GS ++     A  FF+ M+ KG  P     +   +         +   + +V+     
Sbjct: 455 MKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGI 514

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
            +D  +YN+++  LC +G L +A  +  +M   GL PD   Y  L+ A C   LLR A+K
Sbjct: 515 SSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            +  M + G + +  TY + I  +   G +  A   F  MLE+GV P+  TY  L+  LC
Sbjct: 575 FFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC 634

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
           +    Q A+  F++ +   ++  +   +  +   C+ G++  A +    +  +  H D  
Sbjct: 635 RTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYL 694

Query: 575 SHVILLKSLADAREVEMAIEHIK 597
           +H  L K   D   +  AIE+++
Sbjct: 695 THKALFKGF-DEGHMNHAIEYLE 716



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 49/355 (13%)

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFILGLIVERRICEA 315
           +P  + Y  + + F   G   +  ++LK+   R  G  P    +   I GL  +  + EA
Sbjct: 234 EPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEA 293

Query: 316 KELGEVIVSGK----FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
            E+ E +   K    FT +  +   L  G V   D          M  +G +PT+ T + 
Sbjct: 294 AEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLE-----MENEGIMPTVVTYNA 348

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +   L +  + +     +  + A     D+ +YN +++  C +G L+EA  +  +++  G
Sbjct: 349 MIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAG 408

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P V  YN L++  CR   L  A++L ++M   GC  ++ TY IL+        +  A 
Sbjct: 409 LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAR 468

Query: 491 RLFHNMLEKGVAP-----------------------------------DATTYTSLLEGL 515
             F  ML KG+ P                                   D  TY  L++GL
Sbjct: 469 EFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGL 528

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSD 569
           C+  NL  A ++  K V H+ +    I  T +I + C RG    A K  + + SD
Sbjct: 529 CKTGNLNDAKDLQMKMV-HNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 44/210 (20%)

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +  +  ++++    D++  N ++  L  + R  +   V  EM + G++P +  YN+L+++
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 445 CCREDLLRPAKKLWDQM--FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM------ 496
             +E        L  +M    SGC  N  T+N++I+  +  G++E A  +   M      
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA 306

Query: 497 -------------------------LE---KGVAPDATTYTSLLEGLCQETNLQAA---- 524
                                    LE   +G+ P   TY +++ GL Q   ++AA    
Sbjct: 307 SSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKF 366

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            E+    +  DV+   S+L+ +    C+ G
Sbjct: 367 VEMRAMGLQPDVITYNSLLNGY----CKAG 392


>gi|307136214|gb|ADN34051.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 653

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 132/563 (23%), Positives = 252/563 (44%), Gaps = 34/563 (6%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R+W   LEQ      +  SL+ SLV RV+  +      LAL F+NW   + NF+HS  S 
Sbjct: 44  RRW-KFLEQ------VSPSLTNSLVCRVVREFR-NSPQLALEFYNWVEARDNFSHSLESC 95

Query: 88  HSILKSLSLSRQINAIDSVLK--QVKVNKITL---------------DSSVYRFIIPSLI 130
            +++  L  SR  N   S+++   +K  K  L               + +V+  ++ +  
Sbjct: 96  CTLVHVLVNSRNFNDALSIMESLMLKNGKSPLEVLGGLMNSYEICNSNPAVFDALVRTCT 155

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
           Q K+ + A+ V  +++     +     N+ L +L   G  D    M+ EM   G   +  
Sbjct: 156 QLKSVEGAYDVIRKLRLEGFWVTIHAWNNFLNLLLKLGETDKFWNMYMEMVASGYSENVN 215

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVL 249
            F + I+  C+  KL + +S++  + K E   I  +V++  +II    K   ++ A K+ 
Sbjct: 216 TFNLIIYALCKECKLLEAISVVYLMLKIE---IWPNVVSFNMIIDKASKMGEMDLALKLT 272

Query: 250 DELRI---RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
               +       P+ + Y  +   F  +  +   + VL +  KLG+      Y   I G 
Sbjct: 273 RNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNVLAEMIKLGIDSNERTYAPLIDGY 332

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTL 365
             +  +  A  L + +V  +   D  V N+LI  +    +   A    + MI +  +P  
Sbjct: 333 ARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEEASFLLSDMINRRILPDE 392

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T S L+K LC     ++ + V+  +   +   D  ++N++++++  S  +  A  ++  
Sbjct: 393 FTYSILTKGLCLSGHLNKALRVHYYIVERNLVKDAYTHNILINYMFQSRNIAGAKQLLSS 452

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G+ PD+  Y +L+   C+E  +  A +++D+   +    NL  YN ++    + G 
Sbjct: 453 MIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGS 512

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           I+ A RL  + L++    D+ TY +LL G C    ++ AF +F + +N   ++     + 
Sbjct: 513 IDAA-RLLVDKLQQNGFLDSVTYNTLLHGFCVNGEVEKAFALFLEMINVGSLVNIVSYNI 571

Query: 546 FMISLCRRGHFLVATKLLRGLSS 568
            +  LC+ G    A +L+R ++S
Sbjct: 572 MINFLCKMGLIQQAMELMRAMAS 594



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 46/256 (17%)

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR----------- 428
           ++D+   +Y  + A+ Y  ++ ++N+++  LC   +L EA  V+  M +           
Sbjct: 194 ETDKFWNMYMEMVASGYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSFN 253

Query: 429 ---------------------------KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
                                        + P++  YN ++   C+   L  AK +  +M
Sbjct: 254 MIIDKASKMGEMDLALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNVLAEM 313

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N +TY  LI  ++  G ++ A RL   M+E  + PD   Y SL+  L  E  L
Sbjct: 314 IKLGIDSNERTYAPLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGEL 373

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSH 576
           + A  + +  +N  ++      S     LC  GH   A ++      R L  D   + +H
Sbjct: 374 EEASFLLSDMINRRILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKD---AYTH 430

Query: 577 VILLKSLADAREVEMA 592
            IL+  +  +R +  A
Sbjct: 431 NILINYMFQSRNIAGA 446


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 223/505 (44%), Gaps = 45/505 (8%)

Query: 49  PSL-VARVINPYLLTHHSLAL------GFFNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           PSL V  V++  L+ H+ L+L       FF + S QP F  +  +Y  + + L++     
Sbjct: 78  PSLSVHHVVD--LINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFT 135

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--- 156
              S+++ V V++   +S+   FI  SL++ + T     + + +     D+G  P+    
Sbjct: 136 EAQSLIELV-VSRKGKNSASSVFI--SLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQC 192

Query: 157 ---------------CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
                          C +LL  +            + E+   G   +   F + + KFC+
Sbjct: 193 FRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCK 252

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +     + DE+ KR    +  +V++   +I+G+CK   ++E F++  ++     +PD
Sbjct: 253 EGNISDAQKVFDEITKRS---LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309

Query: 261 FIAY----RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
              Y      + +E K+ G+      +  +  K G+ P    +   I G      I   K
Sbjct: 310 VFTYSALINALCKENKMDGA----HGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMK 365

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           E  + ++S     D  + N L+ G   + D  +A    + MI +G  P   T + L    
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+    +  +E+ K +  N    D   ++ +V  +C  GR+ +A   ++EM R G+ PD 
Sbjct: 426 CRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDD 485

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  +M+A C++   +   KL  +M + G   ++ TYN+L++   ++G+++ A  L   
Sbjct: 486 VTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDA 545

Query: 496 MLEKGVAPDATTYTSLLEGLCQETN 520
           ML  GV PD  TY +LLEG  +  N
Sbjct: 546 MLNIGVVPDDITYNTLLEGHHRHAN 570



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 108/212 (50%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ + ++   PT+ + + L    CK    DE   +   +  +    D+ +Y+ +++ LC 
Sbjct: 263 FDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCK 322

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             ++  A+G+  EM ++GL P+   + +L+    R   +   K+ + +M + G   ++  
Sbjct: 323 ENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVL 382

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN L++ F + G++  A  +   M+ +G+ PD  TYT+L++G C+  +++ A E+  +  
Sbjct: 383 YNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMD 442

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            + + L R   S  +  +C+ G  + A + LR
Sbjct: 443 QNGIELDRVGFSALVCGMCKEGRVIDAERALR 474



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 1/234 (0%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVYKVLSAND 395
           L+  +  ++P   I  F   I     P    + N+  N  CK     +  +V+  ++   
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
               + S+N +++  C  G L E + +  +M++    PDV  Y++L+ A C+E+ +  A 
Sbjct: 271 LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+D+M   G   N   +  LI   S  GEI+     +  ML KG+ PD   Y +L+ G 
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           C+  +L AA  + +  +   +   +   +T +   CR G    A ++ + +  +
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQN 444



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 110/240 (45%), Gaps = 8/240 (3%)

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
            NL   + K N +  +   Y  +    +  ++  +N++++  C  G + +A  V  E+ +
Sbjct: 209 GNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITK 268

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           + L P V  +N+L+   C+   L    +L  QM  S    ++ TY+ LI+   +  +++G
Sbjct: 269 RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDG 328

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  LF  M ++G+ P+   +T+L+ G  +   +    E + K ++  +     + +T + 
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388

Query: 549 SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
             C+ G  + A  ++     RGL  D     ++  L+       +VE A+E  K + ++ 
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPD---KITYTTLIDGFCRGGDVETALEIRKEMDQNG 445


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 121/557 (21%), Positives = 240/557 (43%), Gaps = 48/557 (8%)

Query: 29  KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           KW    E+ +  L L+  +   LV +V++  +       + FF WA ++ +F H   +Y 
Sbjct: 73  KWGSDAEKAIEVLKLK--VDHRLVHQVLD--IDVEIRAKIQFFKWAGKRQHFQHDSTTYM 128

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           ++++ L  S  ++ +   ++ +  +  ++  + +  I+  L + K   KA SVF ++K  
Sbjct: 129 ALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGR 188

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQ 207
             +    + N+L+ +L  +G+ +   ++++E+   G     TI +   I  F +  +   
Sbjct: 189 KCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDF 248

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              + DE++  EN +     I   I+  + K  +VE A ++++E++ + C P    Y  +
Sbjct: 249 AFRLFDEMK--ENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTEL 306

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            +    +G V +   +     K G  P        I  L    R+ +A +L   + S + 
Sbjct: 307 IKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQC 366

Query: 328 TIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---- 381
             +    N +I ++  S      A ++F  M   G  P+  T + L    CK N+     
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKAL 426

Query: 382 ----------------------DELVEVYKVLSANDYFTDMES---------YNVMVSFL 410
                                 D L    +  +AN+ F +++          Y VM+   
Sbjct: 427 LLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              GRL +A  +  E ++ G  PDV  YN+LM    R  ++  A  L   M  +GC+ ++
Sbjct: 487 GNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDI 546

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN- 529
           K++NI+++  ++ G  + A+ +F  M E  + PDA +Y ++L  L +    + A ++   
Sbjct: 547 KSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606

Query: 530 ---KSVNHDVMLARSIL 543
              K   +D +   SIL
Sbjct: 607 MKLKGFEYDSITYSSIL 623


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/469 (20%), Positives = 207/469 (44%), Gaps = 14/469 (2%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N+ H+ + Y++I+ +   +  +   ++++  ++   +     +Y  ++   +  +   K 
Sbjct: 292 NWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKC 351

Query: 139 FSVFNEVKFNCE-DIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            +VF  +K   E  + P + +   L+ + +  G +D AL++ +EM  +G++ +   + + 
Sbjct: 352 LNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMI 411

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
           I  + +        S+ +++    N+ I    I   ++++ FCK  ++  A ++L  +  
Sbjct: 412 IDGYVQLGDTANAFSVFEDM---SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMES 468

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
            +C P    Y I+ + F  +G +      ++  +  G  P    Y   + GL    ++  
Sbjct: 469 GDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDR 528

Query: 315 AKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A  +  E++V+G    +      + G     D   A  +FN + E G  P +   ++L K
Sbjct: 529 AASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLK 588

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK  +    + +   ++A     +   YN+++      G + EA  ++Q+M+ +GL P
Sbjct: 589 ACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTP 648

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D+  Y S + ACC+   +  A +  +QM   G   NL+ Y  LI  ++     E AL  +
Sbjct: 649 DIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICY 708

Query: 494 HNMLEKGVAPDATTY----TSLLE--GLCQETNLQAAFEVFNKSVNHDV 536
             M   G+ PD   Y    TSLL    + +ET       V ++ V+  +
Sbjct: 709 DEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVLRVTSEMVDQGI 757



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/489 (22%), Positives = 203/489 (41%), Gaps = 34/489 (6%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK--RENSMINGSVIAV 230
           A+   +EM   GV  +   + V I  +    +LG V +     ++   EN   N  VI  
Sbjct: 246 AIACVEEMEAEGVSPNAATYSVIISGY---GRLGDVEAAERWFQRALSENWHHN-DVIYN 301

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF-------KLMGSVFEREVV 283
            IIH +CK   +E A  ++  +  +  +     Y ++ + +       K + +VF R   
Sbjct: 302 NIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCL-NVFRR--- 357

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           LK + + G++P    Y   I       ++ +A ++   +       +    + +I G V 
Sbjct: 358 LKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQ 417

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             D  +A   F  M   G  P   T + L    CK  + +  +E+   + + D    + +
Sbjct: 418 LGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRT 477

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y +++      G LR A+  +++MK  G  P  + YN +M    +   +  A  + D+M 
Sbjct: 478 YTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMV 537

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            +G   N ++Y  LI  ++ +G++  A + F+ + E G+ PD   Y SLL+  C+   +Q
Sbjct: 538 VAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQ 597

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHV 577
           +   +  +     V +   I +  +    +RG    A+ +++     GL+ D+    S +
Sbjct: 598 STLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFI 657

Query: 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
                  D  +    IE +K  Q+     LQ  +  L    +S+SYPE  L+        
Sbjct: 658 NACCKAGDMLKATETIEQMK--QQGVQPNLQAYTT-LIHGWASASYPEKALI-------- 706

Query: 638 CLDSEIGAG 646
           C D    AG
Sbjct: 707 CYDEMKSAG 715



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           + ++V++    G    A    + M+  G++P+V  Y +L+ A      LR A    ++M 
Sbjct: 195 HTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEME 254

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G S N  TY+++IS +  +G++E A R F   L +    +   Y +++   C+  N++
Sbjct: 255 AEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNME 314

Query: 523 AA 524
            A
Sbjct: 315 RA 316



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+  ++ M A+G   N+ +Y  LI  ++   ++ GA+     M  +GV+P+A TY+ ++ 
Sbjct: 211 ARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIIS 270

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSS 568
           G  +  +++AA   F ++++ +      I +  + + C+ G+   A  ++     +GL +
Sbjct: 271 GYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEA 330

Query: 569 DLG 571
            LG
Sbjct: 331 TLG 333



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 52/296 (17%), Positives = 108/296 (36%), Gaps = 75/296 (25%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           KR         ++ + A     ++ SY  ++     +  LR A   ++EM+ +G+ P+ +
Sbjct: 204 KRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAA 263

Query: 437 -----------------------------------FYNSLMEACCREDLLRPAKKLWDQM 461
                                               YN+++ A C+   +  A+ +   M
Sbjct: 264 TYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAM 323

Query: 462 FASGCSGNLKTYNI--------------------------------------LISKFSEV 483
              G    L  YN+                                      LI+ +S++
Sbjct: 324 EEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKL 383

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+++ AL++ + M ++G+  +  TY+ +++G  Q  +   AF VF    N  +       
Sbjct: 384 GKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITY 443

Query: 544 STFMISLCRRGHFLVATKLL-RGLSSDLGHS-DSHVILLKSLADAREVEMAIEHIK 597
           +  M + C+ G    A +LL R  S D   +  ++ I++       ++ MA E ++
Sbjct: 444 NILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVR 499


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 141/651 (21%), Positives = 253/651 (38%), Gaps = 110/651 (16%)

Query: 5   PATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLR--DSLSPSLVARVINPYLLT 62
           P  +L  RI++ +I      RP         Q+LH L  +  D L+ SL+ R     L  
Sbjct: 38  PHPELLDRITRLLI----LNRP---------QSLHNLTFKYSDHLTDSLLRR-----LRL 79

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVK----------- 111
           H S  L FF+ A+Q  ++    LSY  +L  L+ +R      +VL+Q+            
Sbjct: 80  HPSACLSFFHLATQNSHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAY 139

Query: 112 ---------VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
                      +    S V+  ++ +  +   T+ A  VF+E+       G   C+ LL 
Sbjct: 140 AVCNHVFSVYKEFGFCSGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLG 199

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR---- 218
            L   G    A+ +FD++   G+        + +   C+  ++   + +L+++ K     
Sbjct: 200 KLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEP 259

Query: 219 ----ENSMINGS-------------------------VIAVLIIHGFCKGKRVEEAFKVL 249
                N ++NG                          V   +++ G+CK  +++EA K+L
Sbjct: 260 NVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLL 319

Query: 250 ------------------------------DELRIRE------CKPDFIAYRIVAEEFKL 273
                                         D +RIR+       K + +    + + +  
Sbjct: 320 REVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCK 379

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +G V E E V        + P    Y   + G   E ++ +A  L E ++    T     
Sbjct: 380 LGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVT 439

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N +I G V       A+  ++ M+E+G  P   +   +     K   SD  + ++K + 
Sbjct: 440 YNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEIL 499

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
              +     ++N M+S LC  G+L EA  V   MK  GL PD   Y +L +  C+   ++
Sbjct: 500 GRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQ 559

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A ++   M     S +++ YN LI    ++ ++     L   M  +G++P+  TY +L+
Sbjct: 560 EAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLI 619

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            G C E  L  AF ++ + +         + S  + SL R      AT +L
Sbjct: 620 SGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVIL 670



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 204/461 (44%), Gaps = 14/461 (3%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +G  +W     N      SY+++L       +++    + +++  + IT     Y  +I 
Sbjct: 391 VGMVDW-----NLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIK 445

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            L+   +   A  +++ +           C ++L      G  D A+ ++ E+  RG   
Sbjct: 446 GLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTK 505

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
           ST+ F   I   C+  KL +  ++ D  R +E  +    +    +  G+CK   V+EAF+
Sbjct: 506 STVAFNTMISGLCKMGKLMEAGAVFD--RMKELGLSPDEITYRTLSDGYCKNGNVQEAFQ 563

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +   +  +        Y  + +    +  + +   +L + +  G++P    Y   I G  
Sbjct: 564 IKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWC 623

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLS 366
            E+++ +A  L   ++   FT +  V + ++ S+   D  S A V  + M++      L+
Sbjct: 624 DEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLD---FDILA 680

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES---YNVMVSFLCTSGRLREAYGVI 423
             +  S  L K + + E  ++   L  +D    + +   YN+ +  LC SG+L EA  V+
Sbjct: 681 VHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVL 740

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             +  +G  PD   Y +L+ AC     +  A KL D+M   G   N+  YN LI+   ++
Sbjct: 741 SVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKL 800

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G I+ A RLF+ + +KG+ P+A TY  L+   C+  +L  A
Sbjct: 801 GNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKA 841



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 175/416 (42%), Gaps = 37/416 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+      G  +   ++   MS RGV  + +   + +  +C+  K+ +   +L EV +
Sbjct: 265 NGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEE 324

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +++  V  VL+  G+C+  R+E+A ++ DE+     K + +    + + +  +G V
Sbjct: 325 DELLVVDERVYGVLV-DGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQV 383

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E V        + P    Y   + G   E ++ +A  L E ++    T      N +
Sbjct: 384 CEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTV 443

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G V       A+  ++ M+E+G  P   +   +     K   SD  + ++K +    +
Sbjct: 444 IKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGF 503

Query: 397 FTDMESYNVMVSFLCTSGR-----------------------------------LREAYG 421
                ++N M+S LC  G+                                   ++EA+ 
Sbjct: 504 TKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQ 563

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +   M+R+ +   +  YNSL++   +   L     L  +M   G S N+ TY  LIS + 
Sbjct: 564 IKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWC 623

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +  +++ A  L+  M+E+G  P+    + ++  L ++  +  A  + +K ++ D++
Sbjct: 624 DEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDIL 679



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/416 (19%), Positives = 173/416 (41%), Gaps = 15/416 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+LL     +G +  A  + +EM   G+  + + +   I    +       L +   + +
Sbjct: 406 NTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVE 465

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   +    +    ++  F K    + A  +  E+  R      +A+  +      MG +
Sbjct: 466 R--GVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKL 523

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   V  + ++LG++P    YR    G      + EA ++  V+     +   ++ N+L
Sbjct: 524 MEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSL 583

Query: 338 IGSVSSIDPRSAIVFFNFMIE---KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           I  +  I   + +   + ++E   +G  P + T   L    C   K D+   +Y  +   
Sbjct: 584 IDGLFKIRKLNDVT--DLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIER 641

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLRP 453
            +  ++   + +VS L    R+ EA  ++ +M    LD D+ + +N   +   + DL   
Sbjct: 642 GFTPNVVVCSKIVSSLYRDDRISEATVILDKM----LDFDILAVHNKCSDKLVKNDLTLE 697

Query: 454 AKKLWDQMFASGCSGNLK---TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           A+K+ D +  S    +L     YNI I    + G+++ A  +   ++ +G  PD  TY +
Sbjct: 698 AQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCT 757

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           L+       N+  AF++ ++ +   ++   +I +  +  LC+ G+   A +L   L
Sbjct: 758 LIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKL 813



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 164/398 (41%), Gaps = 56/398 (14%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +++++++  L    ++    +V  ++K   ++ D   YR +     +  N Q+AF
Sbjct: 503 FTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAF 562

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +   ++        E+ NSL+  L     +++   +  EM  RG+  + + +G  I  +
Sbjct: 563 QIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGW 622

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+  KL +   +  E+ +R        V+   I+    +  R+ EA  +LD++       
Sbjct: 623 CDEQKLDKAFHLYFEMIER--GFTPNVVVCSKIVSSLYRDDRISEATVILDKM------- 673

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN---------DYREFILGLIVER 310
             + + I+A   K    + + ++ L+ ++      +++          Y   I GL    
Sbjct: 674 --LDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSG 731

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLS 369
           ++ EA+ +  V++S  F  D+     LI + S S +   A    + M+EKG +P ++   
Sbjct: 732 KLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITI-- 789

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
                                            YN +++ LC  G +  A  +  ++ +K
Sbjct: 790 ---------------------------------YNALINGLCKLGNIDRAQRLFYKLYQK 816

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           GL P+   YN L+   CR   L  A +L ++M   G S
Sbjct: 817 GLVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEGIS 854



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+  F+ M   GRVP L + S L   L ++ +    V V+  +       D+   +++
Sbjct: 173 KHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIV 232

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V+  C  GR+  A  V+++M ++GL+P+V  YN L+            +++   M   G 
Sbjct: 233 VNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGV 292

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAF 525
           S N+ T  +L+  + + G+++ A +L   + E   +  D   Y  L++G CQ   ++ A 
Sbjct: 293 SRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAV 352

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            + ++ +   + +   I +T +   C+ G    A ++  G+
Sbjct: 353 RIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGM 393



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +++++      G  + A  V  EM R G  P +   + L+    ++   R A  ++DQ+ 
Sbjct: 159 FDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV 218

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
            +G   ++   +I+++   +VG ++ A+ +   M+++G+ P+  TY  L+ G     + +
Sbjct: 219 GTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFE 278

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMI--SLCRRGHFLVATKLLRGLSSD 569
               V        V  +R++++  M+    C++G    A KLLR +  D
Sbjct: 279 GVERVLRLMSERGV--SRNVVTCTMLMRGYCKKGKMDEAEKLLREVEED 325


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 171/380 (45%), Gaps = 3/380 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++ VL  +G +  A +    M   GV+ + + +   I   C   K  +   +   ++ 
Sbjct: 220 NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD 279

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   +          I G CK  R+EEA  ++ ++      P+ + Y  + + +   G +
Sbjct: 280 K--GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDL 337

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +      +    G+      Y  FI  L +E R+ +A  + + +       D    N L
Sbjct: 338 DKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNIL 397

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     D + A    + M+ KG  PTL T ++L   L KRN+  E   ++  +     
Sbjct: 398 INGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGL 457

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  +N ++   C +G +  A+ +++EM    + PD   YN+LM+  CRE  +  A++
Sbjct: 458 LPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ 517

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M   G   +  +YN LIS +S+ G+++ A R+   M+  G  P   TY +L++GLC
Sbjct: 518 LLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLC 577

Query: 517 QETNLQAAFEVFNKSVNHDV 536
           +    + A E+  + V+  +
Sbjct: 578 KNQEGEHAEELLKEMVSKGI 597



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 41/345 (11%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I+  CK  ++++A + +  +     KP+ + Y  +     L G      V+ +  +  
Sbjct: 221 IMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDK 280

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y  FI GL  E R+ EA  L   ++ G    +    NALI G  +  D   A
Sbjct: 281 GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKA 340

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
             + + MI KG + +L T                                   YN+ +  
Sbjct: 341 YAYRDEMISKGIMASLVT-----------------------------------YNLFIHA 365

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           L   GR+ +A  +I+EM+ KG+ PD   +N L+   CR    + A  L D+M   G    
Sbjct: 366 LFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPT 425

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           L TY  LI    +   ++ A  LF  + ++G+ PD   + +L++G C   N+  AF++  
Sbjct: 426 LVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           +  N  V+      +T M   CR G    A +LL     RG+  D
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPD 530



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 159/354 (44%), Gaps = 13/354 (3%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G    A  +F  M  +G+E     +  FI   C+  +L +   ++   +  E  ++  +V
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLI--CKMLEGGLVPNAV 322

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
               +I G+C    +++A+   DE+  +      + Y +      + G + + + ++K+ 
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKE----LGEVIVSG--KFTIDDDVLNALIGSV 341
           R+ G+ P    +   I G     R  +AK     L E++  G     +    L  ++G  
Sbjct: 383 REKGMMPDAVTHNILINGYC---RCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           + +  + A   F+ + ++G +P +   + L    C     D   ++ K +       D  
Sbjct: 440 NRM--KEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEI 497

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++   C  G++ EA  ++ EMKR+G+ PD   YN+L+    +   ++ A ++ D+M
Sbjct: 498 TYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEM 557

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             +G    + TYN LI    +  E E A  L   M+ KG+ PD +TY S++E +
Sbjct: 558 MTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P  A+  F  + EKG VP + T + +     K N++     +Y  +   +  + + ++N+
Sbjct: 162 PNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNI 221

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           M++ LC  G+L++A   I  M+  G+ P+V  YN+++   C     + A+ ++  M   G
Sbjct: 222 MINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKG 281

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +  TYN  IS   + G +E A  L   MLE G+ P+A TY +L++G C + +L  A+
Sbjct: 282 LEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAY 341

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              ++ ++  +M +    + F+ +L   G    A  +++
Sbjct: 342 AYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIK 380



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 140/332 (42%), Gaps = 38/332 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+    + G +D A    DEM  +G+  S + + +FI       ++G   +M+ E+R 
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMR- 383

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  M+  +V   ++I+G+C+    + AF +LDE+  +  +P  + Y  +          
Sbjct: 384 -EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLI--------- 433

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                                   ++LG     R+ EA  L   I       D  V NAL
Sbjct: 434 ------------------------YVLG--KRNRMKEADALFSKIQQEGLLPDIIVFNAL 467

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G  ++ +   A      M     +P   T + L +  C+  K +E  ++   +     
Sbjct: 468 IDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGI 527

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  SYN ++S     G +++A+ V  EM   G DP +  YN+L++  C+      A++
Sbjct: 528 KPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEE 587

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           L  +M + G + +  TY  +I     V ++EG
Sbjct: 588 LLKEMVSKGITPDDSTYLSIIEAMETVDDLEG 619


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/584 (19%), Positives = 241/584 (41%), Gaps = 54/584 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  F W   Q N+      Y  +++  +   QI+    +  +++  +   D+ +Y  +I
Sbjct: 138 AVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLI 197

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            +  +    + A ++ +++            N+++    + G    AL++  +M+  GV 
Sbjct: 198 HAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVG 257

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV------LIIHGFCKGK 240
              +   + +  F   ++  + ++  +        M+ G+ IA       ++IH   K  
Sbjct: 258 PDLVTHNIVLSAFKNGSQYSKAIAYFE--------MMKGANIAPDTFTLNIVIHCLVKDG 309

Query: 241 RVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           +  EA ++L+ +R +  +C PD + Y  +   + + G V + + V       GV P    
Sbjct: 310 QYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVS 369

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMI 357
           Y                                   NAL+G+ +S    + A+  F  + 
Sbjct: 370 Y-----------------------------------NALLGAYASRGMHADALGIFKLLK 394

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + + + L     +  + ++  E +K +  N    ++ SYN ++    ++G  +
Sbjct: 395 QNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFK 454

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  ++ EM++ G+ PDV   ++L+ AC R   +     + +   + G   N+  YN  I
Sbjct: 455 EAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGI 514

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +   G+   AL L+  M+   V PDA TY  L+ GLC+      + + F   V+  + 
Sbjct: 515 GSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIP 574

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEH 595
           L + + S+ + S  ++G    A      +       D  ++  ++++  D      A + 
Sbjct: 575 LTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDL 634

Query: 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
            K ++ ++      I + L  +L+  S  E +L L+  ++EKC+
Sbjct: 635 FKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCI 678



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/517 (18%), Positives = 194/517 (37%), Gaps = 75/517 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++++ +L +     Q +   +  + +K   I  D+     +I  L++     +A  + N 
Sbjct: 261 VTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNS 320

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++       P++    S++      G +++   +FD M   GV+ + + +   +  +   
Sbjct: 321 MREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASR 380

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                 L +   ++  +N +    V    +++ + +  + E+A +   E+R   C+P+ +
Sbjct: 381 GMHADALGIFKLLK--QNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIV 438

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
           +Y  + + +   G   E   +L +  K G+ P        +      R+I +   + E  
Sbjct: 439 SYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAA 498

Query: 323 VSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
            S    ++    N+ IGS  +  D   A+  +  M+     P   T + L   LCK  K 
Sbjct: 499 KSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKY 558

Query: 382 DELV---------------EVY-----------KVLSANDYFTDME---------SYNVM 406
            E +               EVY           K+  A   F+ M+         +Y  M
Sbjct: 559 AESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAM 618

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLL----------- 451
           +      G  R A+ + +EM+   + PD    +SLMEA  R    E +L           
Sbjct: 619 IEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCI 678

Query: 452 --------------------RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
                               + A ++ + + +S  S ++ T N L++   + G+ E  ++
Sbjct: 679 PLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMMK 738

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           LF+ M+        +TYT LL  L      +   EV 
Sbjct: 739 LFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVL 775



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 146/368 (39%), Gaps = 42/368 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +S  ++L +    RQI  ID++L+  K   I L+   Y   I S +   +  KA  ++  
Sbjct: 473 VSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELY-- 530

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
                 ++ P+    N L++ L   G    +LK F++M    +  +   +   I  + + 
Sbjct: 531 AVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQ 590

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            KL +  S    ++  E+  +   +    +I  +        A+ +  E+     +PD I
Sbjct: 591 GKLTEAESTFSSMK--ESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAI 648

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP-RTNDYREFILGLIVERRICEAKELGEV 321
               + E     GS  ER + L +  K    P     Y E I    + R    A E    
Sbjct: 649 ICSSLMEALN-RGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASE---- 703

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                      ++  L  S+SSI                   ++ TL++L   L K  K+
Sbjct: 704 -----------IIEHLDSSLSSI-------------------SVGTLNHLLTFLGKCGKT 733

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           + +++++  + ++     + +Y V++  L   G+ R+   V+Q M+  G+ P +  Y ++
Sbjct: 734 ECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWMEDAGVSPTLYMYQNV 793

Query: 442 MEACCRED 449
           +    R++
Sbjct: 794 LPYIWRDN 801



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 112/585 (19%), Positives = 214/585 (36%), Gaps = 99/585 (16%)

Query: 22  NRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL---THHSLALGFFNW---AS 75
           N    A  W   LE  L +   R+ + P LV   I        + +S A+ +F     A+
Sbjct: 233 NACGAAGNWKKALE--LCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGAN 290

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
             P+     +  H ++K       I  ++S+ +  K  +   D   Y  I+ S       
Sbjct: 291 IAPDTFTLNIVIHCLVKDGQYGEAIELLNSMRE--KRTQCPPDVVTYTSIMHSYYVCGKV 348

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           +   +VF+ +    E + P I   N+LL   AS G   +AL +F  +   G+    + + 
Sbjct: 349 EDCKAVFDMMV--AEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYT 406

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +  +  + +  +      E+RK  NS     V    +I  +      +EA  +L E+ 
Sbjct: 407 TLLNAYGRSGQPEKAREAFKEMRK--NSCRPNIVSYNALIDAYGSAGMFKEAISLLHEME 464

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                PD ++   +         + + + +L+  +  G+      Y   I   +      
Sbjct: 465 KDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYG 524

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVP-TLSTLSNL 371
           +A EL  V+++     D    N LI  +  +   + ++ FF  M++  R+P T    S+L
Sbjct: 525 KALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDL-RIPLTKEVYSSL 583

Query: 372 SKNLCKRNKSDE----------------------LVEVYK----VLSANDYFTDMESYNV 405
             +  K+ K  E                      ++E Y       +A D F +ME   V
Sbjct: 584 ICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTV 643

Query: 406 MV-SFLCTSGRLREAYG----------VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
              + +C+S  L EA            +++ MK K +  +   Y  ++ +C    +LR  
Sbjct: 644 QPDAIICSS--LMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASC---SMLRDW 698

Query: 455 K--------------------------------------KLWDQMFASGCSGNLKTYNIL 476
           K                                      KL+ +M +S  +  + TY +L
Sbjct: 699 KTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVL 758

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
           +     VG+    + +   M + GV+P    Y ++L  + ++ ++
Sbjct: 759 LRNLLAVGKWRKYIEVLQWMEDAGVSPTLYMYQNVLPYIWRDNSM 803


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 217/522 (41%), Gaps = 78/522 (14%)

Query: 46  SLSPSLVARVINPYLLTHHSLA-LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           S  P+L    + P+L    SL  L      + +P+ T   LS +S LKSLSL     ++ 
Sbjct: 32  SADPALSPLAVLPHLAATPSLPHLLLTASVAGRPHTTS--LSLYSRLKSLSLPIPTASLH 89

Query: 105 SVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
            +L  +       L + ++R  +P               +   FN           +L  
Sbjct: 90  PLLSSLPPAPAFVLFADIFRLRLP--------------LSTTTFNI----------MLRH 125

Query: 164 LASDGYIDNALKMFDEM-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           L + G    AL++  +M S   V ++T+     I  FC   ++   + ++ E+R+R    
Sbjct: 126 LCTAGKPVRALELLRQMPSPNAVTYNTV-----IAGFCARGRVQAGIEIMREMRERGGIA 180

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIVAEEFKLMGSVFERE 281
            +    A  +I G+CK  +VE+A KV DE+    + +P+ + Y  +   +   G++   E
Sbjct: 181 PDKYTYAT-VISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNL---E 236

Query: 282 VVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           V L+ + ++   GV+     Y  F+  L +E R  EA  L E +       D    N LI
Sbjct: 237 VALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILI 296

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL---------------------- 375
            G       + A+  F  M+ KG   T+ T ++L   L                      
Sbjct: 297 NGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIR 356

Query: 376 -------------CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
                        C     D   E+   +       D  +YN ++  LC  GRL EA G+
Sbjct: 357 PDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGL 416

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           I+EM ++G+ PD+  YN+L+     +  ++ A K+ D+M   G +  L TYN +I     
Sbjct: 417 IEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCL 476

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            G+   A  L   M+  G+ PD +TY SL+EGL  E    AA
Sbjct: 477 NGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDERLAA 518



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/458 (22%), Positives = 179/458 (39%), Gaps = 86/458 (18%)

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
           S+   ++ + + G+    + S+++ +K     I     + LL+ L        A  +F +
Sbjct: 51  SLPHLLLTASVAGRPHTTSLSLYSRLKSLSLPIPTASLHPLLSSLPPA----PAFVLFAD 106

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           +    +  ST  F + +   C   K  + L +L ++    N++   +VIA     GFC  
Sbjct: 107 IFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQM-PSPNAVTYNTVIA-----GFCAR 160

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            RV+   +++ E+R R                                   G+AP    Y
Sbjct: 161 GRVQAGIEIMREMRERG----------------------------------GIAPDKYTY 186

Query: 300 REFILGLIVERRICEA-KELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMI 357
              I G     ++ +A K   E++  GK   +  + NALIG      +   A+ +   M+
Sbjct: 187 ATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMV 246

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G   T++T                                   YN+ V  L   GR  
Sbjct: 247 DRGVSMTVAT-----------------------------------YNLFVHTLFMEGRAA 271

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA+ +++EM  KGL PD   YN L+   C+E   + A K+++ M   G    + TY  LI
Sbjct: 272 EAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLI 331

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              S  G ++   RLF++ + +G+ PD   Y +L+   C   ++  AFE+  +     + 
Sbjct: 332 HALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRIT 391

Query: 538 LARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
                 +T M  LC  G    A  L+     RG+  DL
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDL 429


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 206/474 (43%), Gaps = 51/474 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SI+ +L  +R ++  + VL+Q+    +  D   Y  II       + +++  +F  
Sbjct: 300 VTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFR- 358

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + + P I   NS ++ L   G   +A ++F  M+ +G     + + + +  +   
Sbjct: 359 -KMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATE 417

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-----LIIHGFCKGKRVEEAFKVLDELRIREC 257
            +   + ++        +SM +  ++A      ++I    K   ++EA  V  E++ +  
Sbjct: 418 GRFADMNNLF-------HSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGV 470

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           +PD + Y  +   F  MG + +      +   +G+ P T  Y   I G  +   + +AKE
Sbjct: 471 RPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKE 530

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
           L   ++S                     PR  IVFF+ +I                +LC 
Sbjct: 531 LVSEMMSKGI------------------PRPNIVFFSSIIH---------------SLCN 557

Query: 378 RNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
             +  +  +V+  V+   D  T + ++N ++   C  G++ +A+GV+  M   G++PDV 
Sbjct: 558 EGRVMDAHDVFNLVIHIGDRPT-IVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV 616

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+L+   C+   +     L+ +M          TY+I++      G    A ++FH M
Sbjct: 617 TYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEM 676

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           ++ G A D  TY  LL+GLC+      A  +F+K    D     +IL+T + +L
Sbjct: 677 IDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINAL 730



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 174/405 (42%), Gaps = 38/405 (9%)

Query: 158 NSLLAVLASDGYIDNALK-MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N+ L  L      D A+  +   MS  G   + I +   I   C +++  + L M+  + 
Sbjct: 195 NTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMA 254

Query: 217 KRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           K E    +  V++   +IHGF K   V +A  +++E+  +  +PD + Y  + +      
Sbjct: 255 K-EGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKAR 313

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           ++ + E+VL++    GV P    Y   I G        E+ ++                 
Sbjct: 314 AMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKM----------------- 356

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                            F  M  KG +P + T ++   +LCK  +S +  E+++ ++   
Sbjct: 357 -----------------FRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKG 399

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +  D+ SY++++    T GR  +   +   M  KG+  +   +N L+ A  +  ++  A 
Sbjct: 400 HMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAM 459

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++ +M   G   ++ TY+ LIS F  +G +  A+  F  M+  G+ P+   Y SL+ G 
Sbjct: 460 LVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGF 519

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCRRGHFLVA 559
           C   +L  A E+ ++ ++  +     +  S+ + SLC  G  + A
Sbjct: 520 CMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDA 564



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 346 PRSAIVFFNFMIEKG-RVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESY 403
           P     FF  ++  G R  T+   + L K LC   ++DE V+V    +S      +  SY
Sbjct: 172 PDLGPAFFARLLRAGLRTRTIEANTFL-KCLCHAKRTDEAVDVLLHRMSDLGCVPNAISY 230

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           N ++  LC   R +EA  ++Q M ++G    PDV  +N+++    ++  +  A  L ++M
Sbjct: 231 NTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEM 290

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   ++ TYN ++    +   ++ A  +   M++KGV PD  TYT+++ G     + 
Sbjct: 291 VQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHW 350

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD---SHVI 578
           + + ++F K  +  ++      ++FM SLC+ G    A ++ + +++  GH     S+ I
Sbjct: 351 KESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTK-GHMPDLVSYSI 409

Query: 579 LLKSLA 584
           LL   A
Sbjct: 410 LLHGYA 415


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 196/462 (42%), Gaps = 45/462 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N++++       +D+A K+ D M  RG E   + + + I  FC   +L   L ++D++ K
Sbjct: 150 NAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLK 209

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +N         +LI     +G  ++EA K+LDE+  R  +PD   Y +V       G +
Sbjct: 210 -DNCKPTVITYTILIEATITQGG-IDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                 L +  K G     + Y   +  L+ E +     E GE ++S             
Sbjct: 268 DRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKW----EYGEKLMSD------------ 311

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M+ KG  P   T S L   LC+  K DE   V KV+      
Sbjct: 312 ------------------MLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALA 353

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  SY+ ++S LC  G++  A   + +M   G  PD+  YNS++ + C+      A  +
Sbjct: 354 PDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNI 413

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           ++++   GC  N  +YN L       G+   AL +   ML  G+ PD  TY SL+  LC+
Sbjct: 414 FEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCR 473

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSI-LSTFMISLCRRGHFLVATKLLRGLSSD--LGHSD 574
           +  +  A E+       +      I  +T ++ LC+    + A ++L  + ++  L +  
Sbjct: 474 DGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNET 533

Query: 575 SHVILLKSLA------DAREVEMAIEHIKWIQESSPTMLQEI 610
           ++ +L++ +       DA E+   + ++  I E S    Q+I
Sbjct: 534 TYTLLIQGIGFAGWRYDAMELANLLVNMDAISEDSFKRFQKI 575



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
           D + +  L  S  S     ++ F   M+ +G  P +   + L K      K ++ ++V +
Sbjct: 77  DTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVME 136

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           +L  +    D+ +YN ++S  C + R+  A  V+  MK++G +PDV  YN L+   C   
Sbjct: 137 ILEKHGK-PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRG 195

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A ++ DQ+    C   + TY ILI      G I+ A++L   ML +G+ PD  TY 
Sbjct: 196 RLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYN 255

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            ++ G+C+E  L  AFE  ++   +  +   S  +  +  L   G +    KL+
Sbjct: 256 VVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLM 309



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 141/324 (43%), Gaps = 10/324 (3%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  + +E+   L  +  R  KPD I    + + F  M  + +   V++   K G  P  
Sbjct: 88  CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDV 146

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNF 355
             Y   I G     R+  A ++ + +    F  D    N LIG+         A+   + 
Sbjct: 147 FAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQ 206

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           +++    PT+ T + L +    +   DE +++   + +     D  +YNV+V+ +C  G 
Sbjct: 207 LLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGM 266

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L  A+  +  + + G    VS YN L+     E      +KL   M   GC  N  TY+ 
Sbjct: 267 LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYST 326

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH- 534
           LI+     G+I+ A  +   M EK +APD  +Y  L+  LC+E  +  A E  +  ++  
Sbjct: 327 LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGG 386

Query: 535 ---DVMLARSILSTFMISLCRRGH 555
              D++   SIL+    SLC+ G+
Sbjct: 387 HLPDILSYNSILA----SLCKNGN 406


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/534 (21%), Positives = 219/534 (41%), Gaps = 71/534 (13%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +LK L  +  +     +++++    ++ D   Y  +I  L + K  ++A  +  E++   
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                  C +L+  L  DG +D A+++ + M  +G +   + +G  I  FC N  L +  
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 210 SMLDEVR------------------------KRENSMINGS---------VIAVLIIHGF 236
            + DE+                         K  N+++N           V    +I G 
Sbjct: 124 ELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 183

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  R   A  +L+ +  +  +P  + Y ++       G V +   +L+   + G     
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV 243

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDPRS-AIVFF 353
             Y   + GL  + ++ EA +L   +   +  ++ +V   N LIG +      + A+   
Sbjct: 244 VTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIH 303

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M++KG    L T + L     K  K  E +E++K +    +  +  +Y++++   C  
Sbjct: 304 RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKM 363

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC------- 466
             L  A G+  EM+  GL+P +  YN+LM + C+E  L  AK L+ +M  + C       
Sbjct: 364 RMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISF 423

Query: 467 ----SGNLK------------------------TYNILISKFSEVGEIEGALRLFHNMLE 498
                G LK                        T++ LI++ S++GE++ A      M+ 
Sbjct: 424 NTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 483

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            G  PDA  Y SLL+GL  + +      + ++      +L R I+ST +  LC 
Sbjct: 484 SGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCH 537



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  K   P + + + L   LCK  K  E V +   + A   F +  +   ++  LC  GR
Sbjct: 24  MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 83

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  +++ MK+KG D DV  Y +L+   C    L   K+L+D+M   G S N+ TY+ 
Sbjct: 84  MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 143

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+     +G+ + A  + + M E G+ PD  TYT L++GLC++     A ++ N  V   
Sbjct: 144 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 203

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
              +    +  +  LC+ G  + A K+LR +      +D  ++  L+K L D  +V+ A+
Sbjct: 204 EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEAL 263

Query: 594 E 594
           +
Sbjct: 264 K 264



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 3/305 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++ G C+   V EA  ++ E+  +   PD ++Y  +         + E   +L +    
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G  P +      + GL  + R+ EA EL E +    F  D  +   LI G  ++ +    
Sbjct: 63  GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 122

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F+ M+ KG    + T S L   LC+  +  E   V   ++ +    D+ +Y  ++  
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 182

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  GR   A  ++  M  KG +P    YN L+   C+E L+  A K+   M   G   +
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNML--EKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           + TYN L+    + G+++ AL+LF++M   E  + P+  T+  L+ GLC+E  L  A ++
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 528 FNKSV 532
             K V
Sbjct: 303 HRKMV 307



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 117/292 (40%), Gaps = 34/292 (11%)

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G VFE   ++++  +  V+P    Y   I GL      C+AK+L E              
Sbjct: 12  GGVFEAMGLIREMGRKSVSPDIVSYNTLINGL------CKAKKLKE-------------- 51

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
                         A+     M   G  P   T + L   LCK  + DE +E+ + +   
Sbjct: 52  --------------AVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKK 97

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  D+  Y  ++S  C +G L     +  EM  KG+  +V  Y+ L+   CR    + A
Sbjct: 98  GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 157

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + + M   G   ++ TY  LI    + G    A+ L + M+EKG  P   TY  LL G
Sbjct: 158 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           LC+E  +  AF++    +           +T M  LC +G    A KL   +
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+++  LC +G + EA G+I+EM RK + PD+  YN+L+   C+   L+ A  L  +M A
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +GC  N  T   L+    + G ++ A+ L   M +KG   D   Y +L+ G C   NL  
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
             E+F++ +   +       S  +  LCR G +  A  +L  ++    H D  V+    L
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD--VVTYTGL 179

Query: 584 ADA 586
            D 
Sbjct: 180 IDG 182



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 6/276 (2%)

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           K LC+     E + + + +       D+ SYN +++ LC + +L+EA G++ EM+  G  
Sbjct: 6   KGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCF 65

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+     +LM+  C++  +  A +L + M   G   ++  Y  LIS F   G ++    L
Sbjct: 66  PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  ML KG++ +  TY+ L+ GLC+    + A  V N    H +       +  +  LC+
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV---ILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609
            G    A  LL  L  + G   S+V   +LL  L     V  A + ++ + E        
Sbjct: 186 DGRATHAMDLLN-LMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVV 244

Query: 610 ISAELFASLSSSSYPEPILLLLHAL--QEKCLDSEI 643
               L   L      +  L L +++   E CL+  +
Sbjct: 245 TYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNV 280


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/501 (22%), Positives = 207/501 (41%), Gaps = 21/501 (4%)

Query: 72  NWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLK----------QVKVNKITLDSSV 121
           NW S  P F H+  SY ++   LS  +      S+++             V    LD++ 
Sbjct: 89  NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148

Query: 122 YR---FIIPSLI----QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
            R   F+  +L+           A   F  V+ +   I    C  LL  + +        
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIW 208

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
             + E+   G       + + I KFC+   +     + +E+RKR   +   +V    +I+
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKR--GLRPTTVSFNTLIN 266

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G CK + ++E F++   +      PD   Y ++       G +   E +  + ++ G+ P
Sbjct: 267 GLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRP 326

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
               +   I G    RR+  A      +++     D  + N L+  +  + D   A    
Sbjct: 327 NGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M   G  P   T + L    CK    +  +E+ K ++      D  ++  ++S  C  
Sbjct: 387 DEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR+R+A   ++EM   G+ PD + Y  +++  C++  ++   KL  +M  +G    + TY
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN-KSV 532
           N+L++   + G+++ A  L   ML  GV PD  TY  LLEG C+    +   ++ N K +
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGL 566

Query: 533 NHDVMLARSILSTFMISLCRR 553
             D     S++S +  SL  R
Sbjct: 567 IVDYAYYTSLVSEYNKSLKDR 587



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 133/260 (51%), Gaps = 10/260 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A + FN + ++G  PT  + + L   LCK    DE   + K +  N  + D+ +Y+V+
Sbjct: 240 RDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC  GRL  A  +  EM+++GL P+   + +L++   R   +  A   + QM   G 
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGV 359

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +L  YN L++   +VG++  A +L   M   G+ PD  TYT+L++G C+E +L++A E
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 527 VFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLR-----GLSSDLGHSDSHVILL 580
           +  K +N + ++  ++  T +IS  CR G    A + LR     G+  D     ++ +++
Sbjct: 420 I-RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD---DATYTMVI 475

Query: 581 KSLADAREVEMAIEHIKWIQ 600
                   V+M  + +K +Q
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQ 495



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           ++ YN++++  C  G +R+A  +  E++++GL P    +N+L+   C+   L    +L  
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKK 282

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M  +    ++ TY++LI    + G ++ A +LF  M ++G+ P+  T+T+L++G  +  
Sbjct: 283 TMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSR 342

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDLGHSD 574
            + +A   +++ +   V     + +T +  LC+ G    A KL     + G+  D     
Sbjct: 343 RMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPD---KI 399

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQE 601
           ++  L+       ++E A+E  K + E
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNE 426


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 192/439 (43%), Gaps = 52/439 (11%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  RG  F+     + +   C N + G+ +S+L E+R+  NS++        +I GFC+G
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR--NSLMPDVFSYNTVIRGFCEG 190

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K +E+A ++ +E++   C    + + I+ + F   G + E    LK+ + +G+      Y
Sbjct: 191 KELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVY 250

Query: 300 REFILGLIVERRICEAKEL--GEVIVSGKFTIDDD----VLNALIGSVSSIDP-RSAIVF 352
              I G       C+  EL  G+ +        D       N LI     +   + A   
Sbjct: 251 TSLIRGF------CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F FMIE+G  P + T + L   LC   K+ E ++   ++   D   +  +YN++++ LC 
Sbjct: 305 FEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCK 364

Query: 413 SGRLREAYGVIQEMKRK--------------GL-----------------------DPDV 435
            G + +A  +++ MK++              GL                       DPDV
Sbjct: 365 DGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDV 424

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+L+   C+E+ L  A  ++D +     +G+  T NIL++   + G++  A+ L+  
Sbjct: 425 ISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           + +  +  ++ TYT++++G C+   L  A  +  K    ++  +    +  + SLC+ G 
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 556 FLVATKLLRGLSSDLGHSD 574
              A +L   +  D    D
Sbjct: 545 LDQAWRLFEEMQRDNNFPD 563



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/557 (22%), Positives = 238/557 (42%), Gaps = 72/557 (12%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  +  +++ +LK L  + +     S+L++++ N +  D   Y  +I    +GK  +KA 
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            + NE+K +           L+      G +D A+    EM   G+E   + +   I  F
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 200 CENAKLGQVLSMLDEVRKRE--------NSMING-----------SVIAVLI-------- 232
           C+  +L +  ++ DEV +R         N++I G            +   +I        
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317

Query: 233 ------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                 I G C   + +EA + L+ +  ++ +P+ + Y I+  +    G V +   +++ 
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL 377

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI-GSVSS 343
            +K    P    Y   + GL  +  + EA +L  +++      D DV+  NALI G    
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+  ++ ++EK       T + L  +  K    ++ +E++K +S +    + ++Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ--- 460
             M+   C +G L  A G++ +M+   L P V  YN L+ + C+E  L  A +L+++   
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 461 --------------------------------MFASGCSGNLKTYNILISKFSEVGEIEG 488
                                           M  +G S +L TY+ LI++F ++G ++ 
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+  F  M++ G  PDA    S+L+    +       E+  K V+ D++L + +  T M 
Sbjct: 618 AISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMD 677

Query: 549 SLCR-RGHFLVATKLLR 564
            +C    +  +A +LLR
Sbjct: 678 YMCNSSANMDLAKRLLR 694



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 20/300 (6%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L G   +++   A+     M     +P + + + + +  C+  + ++ +E+   +  +  
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              + ++ +++   C +G++ EA G ++EMK  GL+ D+  Y SL+   C    L   K 
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+D++   G S    TYN LI  F ++G+++ A  +F  M+E+GV P+  TYT L++GLC
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-- 574
                + A +  N  +  D        +  +  LC+ G    A +++  +       D  
Sbjct: 329 GVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNI 388

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634
           ++ ILL  L    +                  L E S  L+  L  SSY +P ++  +AL
Sbjct: 389 TYNILLGGLCAKGD------------------LDEASKLLYLMLKDSSYTDPDVISYNAL 430



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N +   V S +   A  F+  M+E        +LS L +   +  K+     V  ++   
Sbjct: 77  NLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR 136

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +  ++ ++N+++  LC +    +A  +++EM+R  L PDV  YN+++   C    L  A
Sbjct: 137 GFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKA 196

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L ++M  SGCS +L T+ ILI  F + G+++ A+     M   G+  D   YTSL+ G
Sbjct: 197 LELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRG 256

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            C    L     +F++ +           +T +   C+ G    A+++ 
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 125/548 (22%), Positives = 221/548 (40%), Gaps = 69/548 (12%)

Query: 63  HHSLALGFFNWASQQPNFTHSPLSYHSILKS--LSLSRQINAIDSVLKQVKVNKITLDS- 119
           H  LAL F  W  +QP      L++   L +  L  +R  ++  S+L+ +    I   S 
Sbjct: 89  HGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSI 148

Query: 120 ---------------SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
                          SV+  +I   ++      A   F  V           CN +LA +
Sbjct: 149 FGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASM 208

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             D   +    +F EMS +G+  +   F + I   C    L +  ++L ++   EN  + 
Sbjct: 209 VKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM--EENGFVP 266

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V    +++ +CK  R + A +++D +  +  + D   Y +  +         +  ++L
Sbjct: 267 TIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLL 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           KK RK  ++P    Y   I G + E +I  A ++   +     + +    NALIG    +
Sbjct: 327 KKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHV 386

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D   A+   + M   G              L +     E ++VY V++ N +  D  + 
Sbjct: 387 GDFEEALRLLDHMEAAGL------------RLNEHGNVTEAMKVYAVMNCNGHGADHFTC 434

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--------------------VSF------ 437
           NV+VS LC  G+L EA   +  M R GL P+                     SF      
Sbjct: 435 NVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIK 494

Query: 438 ---------YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
                    Y SL++  C+   L  AKK  +++     + +   YN L+++  + G +  
Sbjct: 495 CGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHE 554

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+ LF  M++  V PD+ TY+SLL GLC++     A  +F  ++    +    ++ T ++
Sbjct: 555 AVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLV 614

Query: 549 -SLCRRGH 555
             L + GH
Sbjct: 615 DGLSKAGH 622



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 195/465 (41%), Gaps = 27/465 (5%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  F  + ++Y+++L       +  A   ++  +    I  D   Y   I +L     +
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 136 QKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            KA+ +  +++   E I P     N+L+     +G I  A ++F+EMS   +  + + + 
Sbjct: 320 AKAYLLLKKMRK--EMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYN 377

Query: 194 VFIWKFCENAKLGQVLSMLDE-----VRKRENSMINGS--VIAVLIIHG----------- 235
             I   C      + L +LD      +R  E+  +  +  V AV+  +G           
Sbjct: 378 ALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVL 437

Query: 236 ---FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
               C+  ++ EA K L  +      P+ I Y  +   +  +G             K G 
Sbjct: 438 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 497

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIV 351
            P    Y   + GL     + EAK+    +      +D  + N L+  +  S +   A+ 
Sbjct: 498 HPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVA 557

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFL 410
            F+ M++   +P   T S+L   LC++ K+   V ++   +     F +   Y  +V  L
Sbjct: 558 LFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGL 617

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             +G  + A+   +EM +KG  PD   +N+++++C R   +  A   +  M   G   NL
Sbjct: 618 SKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNL 677

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            TYNIL+  FS+   +   L L+  M+ +G+ PD  T+ SL+ GL
Sbjct: 678 ATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGL 722



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 159/415 (38%), Gaps = 16/415 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  ++  L +G N  +A    N + +    +   + N+LLA     G +  A+ +FD+M
Sbjct: 503 TYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKM 562

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
               V   +  +   +   C   K    + +      R  ++    V+   ++ G  K  
Sbjct: 563 VQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR-GTLFPNHVMYTCLVDGLSKAG 621

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
             + AF   +E+  +   PD +A+  + +     G + +        R  GV P    Y 
Sbjct: 622 HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 681

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS--------------IDP 346
             + G   ++ +     L   ++      D    ++LI  +S               I  
Sbjct: 682 ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 741

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            S +V    M+E G +P  +    L   +C+        ++   + A  + +   + + M
Sbjct: 742 ESTVVLHE-MLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAM 800

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V  L   G+  +A  V+  M R  L P ++ + +LM   CR+  +  A KL   M   G 
Sbjct: 801 VRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGL 860

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             ++  YN+LI      G+   A  L+  M  + + P+ TTY  L++ +    NL
Sbjct: 861 KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNL 915



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 101/204 (49%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P++ T + +  ++ K  +++ +  +++ +S      ++ ++N++++ LC  G L++A
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++++M+  G  P +  YN+L+   C++   + A +L D M   G   ++ TYN+ I  
Sbjct: 253 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 312

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                    A  L   M ++ ++P+  TY +L+ G  +E  +  A +VFN+    D+   
Sbjct: 313 LCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPN 372

Query: 540 RSILSTFMISLCRRGHFLVATKLL 563
               +  +   C  G F  A +LL
Sbjct: 373 CVTYNALIGGHCHVGDFEEALRLL 396



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 171/448 (38%), Gaps = 61/448 (13%)

Query: 134 NTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           N  +A  V+     NC   G +   CN L++ L  DG +  A K    MS  G+  ++I 
Sbjct: 411 NVTEAMKVY--AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSIT 468

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
           +   I  +          S  D++ K     +    GS     ++ G CKG  + EA K 
Sbjct: 469 YDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGS-----LLKGLCKGGNLVEAKKF 523

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           L+ L       D + Y  +  E    G++ E   +  K  +  V P +  Y   + GL  
Sbjct: 524 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 583

Query: 309 ERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVP--- 363
           + +   A  L G  +  G    +  +   L+  +S    P++A  FF  M++KG  P   
Sbjct: 584 KGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTV 643

Query: 364 --------------------------------TLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                                            L+T + L     K+      + +Y  +
Sbjct: 644 AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTM 703

Query: 392 SANDYFTDMESYNVMVSFLCTSGR------------LREAYGVIQEMKRKGLDPDVSFYN 439
                F D  +++ ++  L  SG             + E+  V+ EM   G+ P  + Y 
Sbjct: 704 MREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYI 763

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+   CR   ++ A KL D+M A G   +    + ++      G+ E A+ +  +ML  
Sbjct: 764 TLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRM 823

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEV 527
            + P   T+T+L+   C++  +  A ++
Sbjct: 824 RLLPTIATFTTLMHRFCRDAKIAEALKL 851



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 14/213 (6%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E G VPT+ T + L    CK+ +    +E+   +       D+ +YNV +  LCT+ R
Sbjct: 259 MEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHR 318

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +AY ++++M+++ + P+   YN+L+    +E  +  A +++++M     S N  TYN 
Sbjct: 319 SAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNA 378

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI     VG+ E ALRL  +M   G+             L +  N+  A +V+   +N +
Sbjct: 379 LIGGHCHVGDFEEALRLLDHMEAAGLR------------LNEHGNVTEAMKVY-AVMNCN 425

Query: 536 VMLARSILSTFMI-SLCRRGHFLVATKLLRGLS 567
              A       ++ SLCR G    A K L  +S
Sbjct: 426 GHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMS 458



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 85/191 (44%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K    D  VE ++++    +   + + N++++ +    R    + + +EM  KG+ P+V 
Sbjct: 175 KEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVG 234

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            +N L+   C E  L+ A  L  QM  +G    + TYN L++ + + G  + A+ L   M
Sbjct: 235 TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM 294

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           + KG+  D  TY   ++ LC       A+ +  K     +       +T +    + G  
Sbjct: 295 ICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 354

Query: 557 LVATKLLRGLS 567
            VA ++   +S
Sbjct: 355 GVAAQVFNEMS 365



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 168/413 (40%), Gaps = 39/413 (9%)

Query: 70  FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
           F N     P    S + Y+++L     S  ++   ++  ++  N +  DS  Y  ++  L
Sbjct: 523 FLNRLHYIPGAVDSVM-YNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGL 581

Query: 130 IQGKNTQKAFSVF-----------NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
            +      A  +F           N V + C          L+  L+  G+   A   F+
Sbjct: 582 CRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC----------LVDGLSKAGHPKAAFYFFE 631

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-RENSMINGSVIAVLIIHGFC 237
           EM  +G    T+ F   I   C  ++ GQ++   D     R   +        +++HGF 
Sbjct: 632 EMMKKGTCPDTVAFNAII-DSC--SRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFS 688

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYR----------IVAEEFKLMGSVF--EREVVLK 285
           K + +     +   +      PD + +           I     KL+G +   E  VVL 
Sbjct: 689 KKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLH 748

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
           +  + GV P+   Y   I G+     I  A +L + + +  F   +   +A++ G +   
Sbjct: 749 EMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCG 808

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
               A++  + M+    +PT++T + L    C+  K  E +++  V+       D+ +YN
Sbjct: 809 KTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYN 868

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           V++  +C +G    A+ + +EM+ + L P+++ Y  L++A    + L   +KL
Sbjct: 869 VLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKL 921



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  P V   N ++ +  ++        L+ +M   G   N+ T+NILI+     G ++ A
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             L   M E G  P   TY +LL   C++   +AA E+ +  +   +       + F+ +
Sbjct: 253 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 312

Query: 550 LCRRGHFLVATKLLRGLSSDL 570
           LC       A  LL+ +  ++
Sbjct: 313 LCTNHRSAKAYLLLKKMRKEM 333



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           S ++ L+    +E ++  A + ++ +   G   ++ T N++++   +    E    LF  
Sbjct: 164 SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 223

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M +KG+ P+  T+  L+ GLC E NL+ A  +  +   +  +      +T +   C++G 
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 556 FLVATKLL-----RGLSSDL 570
           +  A +L+     +G+ +D+
Sbjct: 284 YKAAIELIDYMICKGIEADV 303



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 22/251 (8%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           SL  +++   I P  LT HSL LG     S  P+     L    + +S            
Sbjct: 698 SLYSTMMREGIFPDKLTFHSLILGLSK--SGIPDLGVKLLGKMIMEES----------TV 745

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK---FNCEDIGPEICNSLLA 162
           VL ++  N +    + Y  +I  + +  + Q AF + +E++   F   ++     ++++ 
Sbjct: 746 VLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAE---SAMVR 802

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G  ++A+ + D M    +  +   F   + +FC +AK+ + L +   +   E   
Sbjct: 803 GLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVM---ELCG 859

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   V+A  ++I G C       AF++ +E+R R+  P+   Y ++ +      ++ + E
Sbjct: 860 LKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGE 919

Query: 282 VVLKKKRKLGV 292
            +L   ++ G+
Sbjct: 920 KLLTDLQERGL 930


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 232/500 (46%), Gaps = 31/500 (6%)

Query: 64  HSLALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           HS     +++  Q+   P+F +  +    I++SL  S++ + +  + K++       D  
Sbjct: 12  HSQVSELYDFMRQEGRLPSFGYVRM----IVESLVESKKFDNVLDLFKEMVGLGFRPDKL 67

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFD 178
           VY   + + ++  + + A  +F  +K     + P +   N L+  L  +  I +A K+F 
Sbjct: 68  VYGRAMLAAVKLGDLKLAMELFETMKR--RKVVPNVFVYNVLIGGLCKEKRIRDAEKLFG 125

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFC 237
           EMS R +  + + F   I  +C+  ++   + + + ++K +   +  S+I    ++ G C
Sbjct: 126 EMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEK---VEPSIITFNSLLSGLC 182

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK-LGVAPRT 296
           K +R+EEA  +L+E++     PD   Y I+ +   L+ S       L   R+ +G   + 
Sbjct: 183 KARRIEEARCMLNEIKCNGFVPDGFTYSIIFD--GLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 297 NDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFF 353
           ++Y   IL  GL  E ++ +A+E+ + +V       + + N ++     I D   AI+  
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTI 300

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF---L 410
             M  +G  P     +++    C+    D+  E  K +        +E+YN+++     L
Sbjct: 301 EQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRL 360

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   R    + +++EM+  G  P+V  Y SL+   C++  +  A+ +   M   G   N 
Sbjct: 361 CVFSR---CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNA 417

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN- 529
             YN+LI     VG++  ALR F  M + G+     TY SL++GLC+   L+ A E+F  
Sbjct: 418 NIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFL 477

Query: 530 -KSVNH--DVMLARSILSTF 546
             S  H  DV+   S++S +
Sbjct: 478 ITSTGHCPDVITYNSLISGY 497



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 218/489 (44%), Gaps = 42/489 (8%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + +++++++     + +++    + +++K  K+      +  ++  L + +  ++A
Sbjct: 131 NLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEA 190

Query: 139 FSVFNEVKFNCEDIGPE-ICNSLL--AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             + NE+K  C    P+    S++   +L SD     AL ++ E   +GV+       + 
Sbjct: 191 RCMLNEIK--CNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSIL 248

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +   C+  K+ +   +L  +   E+ ++ G VI   I++G+C+   ++ A   ++++  R
Sbjct: 249 LNGLCKEGKVEKAEEVLKSLV--EHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESR 306

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             +P+ IA+  V ++F  M  + + E  +KK    G+AP    Y   I G     R+C  
Sbjct: 307 GLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY---GRLC-- 361

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
                 + S  F I ++                       M E G  P + +  +L   L
Sbjct: 362 ------VFSRCFQILEE-----------------------MEENGEKPNVISYGSLINCL 392

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK  K  E   V + +       +   YN+++   CT G+LREA     EM + G+   +
Sbjct: 393 CKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATI 452

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YNSL++  C+   L+ A++++  + ++G   ++ TYN LIS +S  G  +  L L+  
Sbjct: 453 VTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYET 512

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M + G+ P   T+  L+ G C +  ++    +FN+ +  ++   R + +  +      GH
Sbjct: 513 MKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGH 571

Query: 556 FLVATKLLR 564
              A  L +
Sbjct: 572 VQKAFSLQK 580



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 183/407 (44%), Gaps = 16/407 (3%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           DN L +F EM   G     + +G  +    +   L   + + + +++R+  ++    +  
Sbjct: 48  DNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK--VVPNVFVYN 105

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G CK KR+ +A K+  E+ +R   P+ + +  + + +   G V     + ++ +K 
Sbjct: 106 VLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKE 165

Query: 291 GVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSG----KFT---IDDDVLNALIGSVS 342
            V P    +   + GL   RRI EA+  L E+  +G     FT   I D +L +  G+ +
Sbjct: 166 KVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGA 225

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           ++D       +   I KG      T S L   LCK  K ++  EV K L  +        
Sbjct: 226 ALD------LYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVI 279

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN +V+  C  G +  A   I++M+ +GL P+   +NS+++  C   ++  A++   +M 
Sbjct: 280 YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMV 339

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G + +++TYNILI  +  +       ++   M E G  P+  +Y SL+  LC++  + 
Sbjct: 340 GKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKIL 399

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            A  V    V   V+   +I +  +   C  G    A +    +S +
Sbjct: 400 EAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKN 446



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/519 (22%), Positives = 201/519 (38%), Gaps = 85/519 (16%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN-TQKAFSV 141
           S ++++S+L  L  +R+I     +L ++K N    D   Y  I   L++  +    A  +
Sbjct: 170 SIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDL 229

Query: 142 FNEV--------KFNC----------------EDI-----------GPEICNSLLAVLAS 166
           + E          + C                E++           G  I N+++     
Sbjct: 230 YREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQ 289

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G +D A+   ++M  RG+  + I F   I KFCE       + M+D+  +    M+   
Sbjct: 290 IGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCE-------MQMIDKAEEWVKKMVGKG 342

Query: 227 VIAV-----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +        ++I G+ +       F++L+E+     KP+ I+Y  +       G + E E
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 282 VVLKKKRKLGVAPRTN-----------------------------------DYREFILGL 306
           +VL+     GV P  N                                    Y   I GL
Sbjct: 403 MVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGL 462

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTL 365
               ++ EA+E+  +I S     D    N+LI   S+  + +  +  +  M + G  PT+
Sbjct: 463 CKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTI 522

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
           +T   L     K     +     ++L  N    D   YN M+     +G +++A+ + +E
Sbjct: 523 NTFHPLISGCSKEGIKLKETLFNEMLQMN-LSPDRVVYNAMIHCYQETGHVQKAFSLQKE 581

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G+ PD   YNSL+    +E  L   K L D M A G      TY++LI    ++ +
Sbjct: 582 MVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKD 641

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             GA   +  MLE G  P+      L  GL ++  LQ A
Sbjct: 642 FNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEA 680



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 153/396 (38%), Gaps = 54/396 (13%)

Query: 51  LVARVINPYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYHSILKSLSLSRQ 99
           +V + I P + T++ L  G+         F    +       P  +SY S++  L    +
Sbjct: 338 MVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGK 397

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-- 157
           I   + VL+ +    +  ++++Y  +I         ++A   F+E+  N   IG  I   
Sbjct: 398 ILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKN--GIGATIVTY 455

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+  L   G +  A +MF  ++  G     I +   I  +  NA   Q    L E  K
Sbjct: 456 NSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY-SNAGNSQKCLELYETMK 514

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +       +    LI     +G +++E   + +E+      PD + Y  +   ++  G V
Sbjct: 515 KLGLKPTINTFHPLISGCSKEGIKLKET--LFNEMLQMNLSPDRVVYNAMIHCYQETGHV 572

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   + K+   +GV P    Y   ILG + E ++ E K+L + + +     + D  + L
Sbjct: 573 QKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLL 632

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G     D   A V++  M+E G +P +   + LS  L K                   
Sbjct: 633 IQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRK------------------- 673

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
                            GRL+EA  +  EM   G+D
Sbjct: 674 ----------------DGRLQEAQSICSEMIANGMD 693



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            ++FM ++GR+P+   +  + ++L +  K D +++++K                      
Sbjct: 18  LYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFK---------------------- 55

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
                        EM   G  PD   Y   M A  +   L+ A +L++ M       N+ 
Sbjct: 56  -------------EMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVF 102

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            YN+LI    +   I  A +LF  M  + + P+  T+ +L++G C+   +  A  +  + 
Sbjct: 103 VYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERM 162

Query: 532 VNHDVMLARSILSTFMISLCR 552
               V  +    ++ +  LC+
Sbjct: 163 KKEKVEPSIITFNSLLSGLCK 183



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 6/171 (3%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M+++G  P   +   ++E+            L+ +M   G   +   Y   +    ++G+
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           ++ A+ LF  M  + V P+   Y  L+ GLC+E  ++ A ++F +    +++  R   +T
Sbjct: 82  LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNT 141

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI----LLKSLADAREVEMA 592
            +   C+ G   VA  L   +  +    +  +I    LL  L  AR +E A
Sbjct: 142 LIDGYCKAGEVDVAIGLRERMKKE--KVEPSIITFNSLLSGLCKARRIEEA 190


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 12/408 (2%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A+ +F EM       S + F  F   F   A+  Q   +LD  ++ E + I  ++  +
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRF---FSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 116

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ FC+  +   A+ VL ++     +PD   +  + +   L G V E  V++ +  +
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 176

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G  P    Y   + G+        A +L   +       D    + +I S+     ID 
Sbjct: 177 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID- 235

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +AI  F  M  KG   ++ T ++L + LCK  K ++   + K + + +   ++ ++NV+
Sbjct: 236 -AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 294

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L+EA  + +EM  +G+ P++  YN+LM+  C ++ L  A  + D M  + C
Sbjct: 295 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 354

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S ++ T+  LI  +  V  ++  +++F N+ ++G+  +A TY+ L++G CQ   ++ A E
Sbjct: 355 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 414

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS---DLG 571
           +F + V+H V+         +  LC  G    A ++   L     DLG
Sbjct: 415 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 462



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 213/496 (42%), Gaps = 55/496 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           SVL +V       D++ +  +I  L ++GK ++    V   V+  C+   P++   NS++
Sbjct: 134 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ---PDVVTYNSIV 190

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             +   G    AL +  +M  R V+     +   I   C +  +   +S+  E+   E  
Sbjct: 191 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETK 247

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I  SV+    ++ G CK  +  +   +L ++  RE  P+ I + ++ + F   G + E 
Sbjct: 248 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 307

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             + K+    G++P    Y   + G  ++ R+ EA  + +++V  K +            
Sbjct: 308 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------ 355

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                                 P + T ++L K  C   + D+ ++V++ +S      + 
Sbjct: 356 ----------------------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 393

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+++V   C SG+++ A  + QEM   G+ PDV  Y  L++  C    L  A ++++ 
Sbjct: 394 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 453

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +  S     +  Y  +I    + G++E A  LF ++  KGV P+  TYT ++ GLC++ +
Sbjct: 454 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 513

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580
           L  A  +  K             +T + +  R G    + KL+  + S  G S       
Sbjct: 514 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS-CGFS------- 565

Query: 581 KSLADAREVEMAIEHI 596
              ADA  ++M I+ +
Sbjct: 566 ---ADASSIKMVIDML 578



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/440 (19%), Positives = 195/440 (44%), Gaps = 7/440 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +P+ T    ++++++K L L  +++    ++ ++  N    D   Y  I+  + +  +T 
Sbjct: 145 EPDTT----TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 200

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A  +  +++           ++++  L  DG ID A+ +F EM  +G++ S + +   +
Sbjct: 201 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 260

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  K      +L ++  RE  ++   +   +++  F K  +++EA ++  E+  R 
Sbjct: 261 RGLCKAGKWNDGALLLKDMVSRE--IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 318

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P+ I Y  + + + +   + E   +L    +   +P    +   I G  + +R+ +  
Sbjct: 319 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 378

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           ++   I       +    + L+ G   S   + A   F  M+  G +P + T   L   L
Sbjct: 379 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 438

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K ++ +E+++ L  +     +  Y  ++  +C  G++ +A+ +   +  KG+ P+V
Sbjct: 439 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 498

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  ++   C++  L  A  L  +M   G + N  TYN LI      G++  + +L   
Sbjct: 499 MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 558

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           M   G + DA++   +++ L
Sbjct: 559 MKSCGFSADASSIKMVIDML 578



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 223/515 (43%), Gaps = 35/515 (6%)

Query: 51  LVARVINPYLLTHHSLALGFFNWAS-QQPNFTH--------SP--LSYHSILKSLSLSRQ 99
           +V+R I P ++T + L   F      Q+ N  +        SP  ++Y++++    +  +
Sbjct: 279 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 338

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           ++  +++L  +  NK + D   +  +I      K       VF  +            + 
Sbjct: 339 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 398

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+      G I  A ++F EM   GV    + +G+ +   C+N KL + L + ++++K  
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-- 456

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           + M  G V+   II G CKG +VE+A+ +   L  +  KP+ + Y ++       GS+ E
Sbjct: 457 SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 516

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             ++L+K  + G AP    Y   I   + +  +  + +L E + S  F+ D   +  +I 
Sbjct: 517 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 576

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY--KVLSANDYF 397
            + S   R   +   + + KG   +   L  LS +   R  S   V+++    ++ +   
Sbjct: 577 MLLSAMKR---LTLRYCLSKGS-KSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNV 632

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM-----EACCREDLLR 452
             +E+  +  + L    R      V+++ K +  D  V   N L+     +A C  DL+ 
Sbjct: 633 NTIEARGMNSAELNRDLRKLRRSSVLKKFKNR--DVRVLVTNELLTWGLEDAEC--DLMV 688

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
             +   D +  +  +G ++     ++       +  A  L   M+++G+AP+  TY+SL+
Sbjct: 689 DLELPTDAVHYAHRAGRMRRPGRKMT-------VVTAEELHKEMIQRGIAPNTITYSSLI 741

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           +G C+E  L  A ++ +  V       R +L+  M
Sbjct: 742 DGFCKENRLDEANQMLDLMVTKGDSDIRYLLAGLM 776



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 111/232 (47%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L   +  I    AI  F  MI    +P+L   S     + +  + + +++  K L  N  
Sbjct: 50  LRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI 109

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ + N+M++  C   +   AY V+ ++ + G +PD + +N+L++    E  +  A  
Sbjct: 110 AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV 169

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M  +GC  ++ TYN +++     G+   AL L   M E+ V  D  TY+++++ LC
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 229

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           ++  + AA  +F +     +  +    ++ +  LC+ G +     LL+ + S
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 281


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 219/523 (41%), Gaps = 42/523 (8%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           ++  F  S  S + +L++L  SR      +V   V  +    D+  Y   + + +  K+ 
Sbjct: 114 RKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDL 173

Query: 136 QKAFSVFNE-VKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            K F +    VK   + +GP +   N +L  L     I +A K+FDEM  R +  +T+ +
Sbjct: 174 DKGFELMKSMVK---DGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTY 230

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              I  +C+   + + L   +  R +E ++    V    +++G C   RV++A +VL E+
Sbjct: 231 NTLIDGYCKVGGIEEALGFKE--RMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEM 288

Query: 253 RI----------------------------RECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                                         +E + D   Y I+      +G + + E VL
Sbjct: 289 EGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVL 348

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K  + GV P    Y   +     E  + +A    E +       +    N +I      
Sbjct: 349 AKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCET 408

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            +   A  +   M+EKG  PT+ T ++L     ++       E    +       ++ SY
Sbjct: 409 GEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISY 468

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             +++ LC   +L +A  V+ +M  +G+ P+   YN L+EA C    L+ A + +D+M  
Sbjct: 469 GSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQ 528

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG    L TYN LI+     G ++ A  LF  M  KG  PD  TY SL+ G  +  N Q 
Sbjct: 529 SGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQK 588

Query: 524 AFEVFNKSVNHDVMLARSILSTF--MISLCRRGHFLVATKLLR 564
             E+++K     ++  +  + TF  +I  CR+   +   K+ +
Sbjct: 589 CLELYDK---MKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQ 628



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 34/360 (9%)

Query: 205 LGQVLSMLDEVRK-----RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           L  V  MLDE        R++  +  +     ++      +  E+   V  ++     +P
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D +AY    +   ++  + +   ++K   K G+ P    Y   + GL   RRI +A++L 
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLF 215

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           + ++      +    N LI     +     A+ F   M E+     L T ++L   LC  
Sbjct: 216 DEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGS 275

Query: 379 NKSDELVEVYKVLSANDYF----------------------------TDMESYNVMVSFL 410
            + D+  EV   +  + +                              D  +Y ++++ L
Sbjct: 276 GRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGL 335

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  GR+ +A  V+ ++   G+ P    YN L+ A C+E  ++ A    +QM   G   N 
Sbjct: 336 CRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNR 395

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+N +ISKF E GE++ A      M+EKGV+P   TY SL+ G  Q+ +    FE  ++
Sbjct: 396 ITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDE 455



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 191/443 (43%), Gaps = 10/443 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  +L  L    +I   + VL ++  N +T     Y  ++ +  Q  + +KA     ++
Sbjct: 327 TYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQM 386

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +    +      N++++     G +D+A      M  +GV  +   +   I  + +    
Sbjct: 387 EERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHF 446

Query: 206 GQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +    LDE+ K   + N +  GS+I  L     CK +++ +A  VL ++  R   P+  
Sbjct: 447 VRCFEFLDEMDKAGIKPNVISYGSLINCL-----CKDRKLIDAEIVLADMIGRGVSPNAE 501

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y ++ E    +  + +      +  + G+      Y   I GL    R+ +A++L   +
Sbjct: 502 IYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQM 561

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  D    N+LI G   S++ +  +  ++ M   G  PT+ T   L    C++   
Sbjct: 562 AGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIY-ACRKEGV 620

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
             + ++++ +   D   D   YN M+      G + +A  + Q+M  +G+D D   YNSL
Sbjct: 621 VTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSL 680

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + A  R+  +   K L D M A G    + TYNILI    ++ +  GA   +  M+E+G+
Sbjct: 681 ILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGL 740

Query: 502 APDATTYTSLLEGLCQETNLQAA 524
             + +    L+ GL +E  L+ A
Sbjct: 741 LLNVSMCYQLISGLREEGMLREA 763



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 108/556 (19%), Positives = 223/556 (40%), Gaps = 59/556 (10%)

Query: 47  LSPSLVARVINPYLLTHHSL------------ALGFFNWASQQPNFTHSPLSYHSILKSL 94
           L   ++ R + P  +T+++L            ALGF     +Q N   + ++Y+S+L  L
Sbjct: 214 LFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQ-NVECNLVTYNSLLNGL 272

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
             S +++    VL +++ +   L      F+      G      F    E++     I  
Sbjct: 273 CGSGRVDDAREVLLEMEGSGF-LPGGFLSFVFDDHSNGAGDDGLFD-GKEIR-----IDE 325

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
                LL  L   G I+ A ++  ++   GV  S I + + +  +C+   + + +   ++
Sbjct: 326 RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQ 385

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           + +R   +    +    +I  FC+   V+ A   +  +  +   P    Y  +   +   
Sbjct: 386 MEER--GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G        L +  K G+ P    Y   I  L  +R++ +A+ +   ++    + + ++ 
Sbjct: 444 GHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N LI +  S+   + A  FF+ MI+ G   TL T + L   L +  +  +  +++  ++ 
Sbjct: 504 NMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAG 563

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+ +YN ++S    S   ++   +  +MK  G+ P V  ++ L+ AC +E ++  
Sbjct: 564 KGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVV-T 622

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL- 512
             K++ +M       +   YN +I  ++E G +  A+ L   M+++GV  D  TY SL+ 
Sbjct: 623 MDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLIL 682

Query: 513 ----------------------------------EGLCQETNLQAAFEVFNKSVNHDVML 538
                                             +GLC   +   A+  + + V   ++L
Sbjct: 683 AYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLL 742

Query: 539 ARSILSTFMISLCRRG 554
             S+    +  L   G
Sbjct: 743 NVSMCYQLISGLREEG 758



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 1/190 (0%)

Query: 375 LCKRNKS-DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           LC  +K  DE  ++Y  +  + +     S N ++  L  S    +   V  ++   G  P
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D   Y   ++A      L    +L   M   G   ++  YN+++    +V  I+ A +LF
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLF 215

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             M+++ + P+  TY +L++G C+   ++ A     +    +V       ++ +  LC  
Sbjct: 216 DEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGS 275

Query: 554 GHFLVATKLL 563
           G    A ++L
Sbjct: 276 GRVDDAREVL 285



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 160/389 (41%), Gaps = 18/389 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +++++++     + +++  ++ ++++    ++     Y  +I    Q  +  + F   +E
Sbjct: 396 ITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDE 455

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +  +   I P + +  SL+  L  D  + +A  +  +M  RGV  +   + + I   C  
Sbjct: 456 M--DKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSL 513

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIREC 257
           +KL       DE       MI   + A L+     I+G  +  RV++A  +  ++  + C
Sbjct: 514 SKLKDAFRFFDE-------MIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGC 566

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            PD I Y  +   +    +  +   +  K + LG+ P    +   I     E  +   K 
Sbjct: 567 NPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKM 626

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             E++       D  V N +I S +   +   A+     M+++G      T ++L     
Sbjct: 627 FQEML-QMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYL 685

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  +  E+  +   + A      +++YN+++  LC       AY   +EM  +GL  +VS
Sbjct: 686 RDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVS 745

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASG 465
               L+     E +LR A+ +  ++   G
Sbjct: 746 MCYQLISGLREEGMLREAQIVSSELSIGG 774


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/500 (21%), Positives = 220/500 (44%), Gaps = 42/500 (8%)

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
           A+D + +  +   +      Y  +I + ++  N ++A  V +E+      +      SL+
Sbjct: 293 ALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLI 352

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
               +   +  AL  F+ M   G+    + F V I  FC+N ++ + +    E+ KR  S
Sbjct: 353 TGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAV----EIYKRMKS 408

Query: 222 ------------MINGSVIA---------------VLIIHGF---------CKGKRVEEA 245
                       MI G + A                 I HGF         CK  +V+ A
Sbjct: 409 VGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMCNKIFLLLCKQGKVDAA 468

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              L  +  +  +P+ + Y  +      M ++     +  +  + G+ P    Y   I G
Sbjct: 469 TSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDG 528

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRVP 363
               +    A E+   +++  F  ++ + N +I  +  +   S    +  N + EK    
Sbjct: 529 FFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSM 588

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
             ++ +++     K   +D  VE Y+ +S N    ++ ++  +++  C S R+  A  +I
Sbjct: 589 GCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMI 648

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EMK K L  DV  Y +L++  C+++ ++ A  L+ ++   G   N+  YN LIS F  +
Sbjct: 649 HEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNL 708

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+++ A+ L+  M+  G++ D  TYT++++GL ++ NL  A +++++ +   ++    + 
Sbjct: 709 GKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILY 768

Query: 544 STFMISLCRRGHFLVATKLL 563
              +  L ++G F+ A+K+L
Sbjct: 769 VVLVNGLSKKGQFVRASKML 788



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/513 (22%), Positives = 213/513 (41%), Gaps = 52/513 (10%)

Query: 67  ALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           AL FFN   ++   P+     +      K++ + + +     + K++K   I   S +  
Sbjct: 364 ALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAV----EIYKRMKSVGIAPSSVLVH 419

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +I   ++ ++ + A  +FN+  F        +CN +  +L   G +D A      M ++
Sbjct: 420 KMIQGCLKAESPEAALEIFND-SFETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENK 478

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G+E + + +   +   C    +    S+  E+   E  +   +    ++I GF K +  +
Sbjct: 479 GIEPNVVFYNNMMLAHCRMKNMDLARSIFSEML--EKGLQPNNFTYSILIDGFFKNQDEQ 536

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            A++V++++                     + S FE   V+              Y   I
Sbjct: 537 NAWEVINQM---------------------IASNFEANEVI--------------YNTII 561

Query: 304 LGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
            GL    +  +AKE L  +I   ++++     N++I G     D  SA+  +  M E G 
Sbjct: 562 NGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGI 621

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P + T ++L    CK N+ D  +E+   + + D   D+ +Y  ++   C    ++ AY 
Sbjct: 622 SPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYT 681

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +  E+   GL P+VS YN+L+        +  A  L+ +M   G S +L TY  +I    
Sbjct: 682 LFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLL 741

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G +  A  L+  +L  G+ PD   Y  L+ GL ++     A ++  +    D      
Sbjct: 742 KDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVL 801

Query: 542 ILSTFMISLCRRGH----FLVATKLL-RGLSSD 569
           I ST +    R G+    F V  ++L +GL  D
Sbjct: 802 IYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHD 834



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 183/446 (41%), Gaps = 65/446 (14%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK------------- 217
           + A+K+F  +  RG E   + F + +   C+   L   L +L E+R+             
Sbjct: 256 EEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTS 315

Query: 218 ------RENSM--------------INGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRE 256
                 +E +M              I  SVIA   +I GFC G  + +A    + +    
Sbjct: 316 VIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEG 375

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PD + + ++ E F     + +   + K+ + +G+AP +    + I G +       A 
Sbjct: 376 LAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAAL 435

Query: 317 EL----GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           E+     E  ++  F  +   L  L+     +D  +A  F   M  KG  P +   +N+ 
Sbjct: 436 EIFNDSFETWIAHGFMCNKIFL--LLCKQGKVD--AATSFLRMMENKGIEPNVVFYNNMM 491

Query: 373 KNLCKRNKSD-------ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
              C+    D       E++E  K L  N++     +Y++++     +   + A+ VI +
Sbjct: 492 LAHCRMKNMDLARSIFSEMLE--KGLQPNNF-----TYSILIDGFFKNQDEQNAWEVINQ 544

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM-----FASGCSGNLKTYNILISKF 480
           M     + +   YN+++   C+      AK++   +     ++ GC+    +YN +I  F
Sbjct: 545 MIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCT----SYNSIIDGF 600

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            + G+ + A+  +  M E G++P+  T+TSL+ G C+   +  A E+ ++  + D+ L  
Sbjct: 601 FKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDV 660

Query: 541 SILSTFMISLCRRGHFLVATKLLRGL 566
                 +   C++     A  L   L
Sbjct: 661 PAYGALIDGFCKKNDMKTAYTLFSEL 686



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 109/243 (44%), Gaps = 2/243 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  FN M+++  VP +  ++N+  +L + N  DE  E+Y  +       D  +  +++ 
Sbjct: 188 AVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMR 247

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMFASGCS 467
                 +  EA  + + +  +G +PD   ++  ++A C+ +DL+     L +     G  
Sbjct: 248 ASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVP 307

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            + +TY  +I    + G +E A+++   M+  G+       TSL+ G C    L  A + 
Sbjct: 308 ASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDF 367

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587
           FN+     +   + + S  +   C+      A ++ + + S +G + S V++ K +    
Sbjct: 368 FNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKS-VGIAPSSVLVHKMIQGCL 426

Query: 588 EVE 590
           + E
Sbjct: 427 KAE 429


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 235/553 (42%), Gaps = 31/553 (5%)

Query: 60  LLTHHSLALGFFNW-ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
           L +H    LG+    A +  N+     +Y ++++      ++   + V   +    I  D
Sbjct: 272 LCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPD 331

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178
             +Y  +I +  +  N  +A ++ N++  N       I +S+L  L   G     +  F 
Sbjct: 332 GYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFK 391

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           E    G+    + + + +   C+  K+ + + +L+E++ R  S+    V    +I G+C 
Sbjct: 392 EFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSL--DVVHYTTLIAGYCL 449

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             ++ +A  + +E++ R  +PD + Y I+   F   G   E   +L      G+ P +  
Sbjct: 450 QGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSAT 509

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL---NALI-GSVSSIDPRSAIVFFN 354
           +   I GL +  ++ EA+           T++D  L   +A++ G   +   R A   F+
Sbjct: 510 HNRIIEGLCMAGKVKEAEAFLN-------TLEDKCLENYSAMVDGYCKANFTRKAYELFS 562

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            + ++G +    +   L  +LC   + D+ + + + + A D   +   Y  ++   C  G
Sbjct: 563 RLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDG 622

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            ++ A  V   +  +G+ PDV  Y  ++   CR + LR A+ +++ M   G   ++ TY 
Sbjct: 623 DMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYT 682

Query: 475 ILISKFSEVG---------------EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +++   S+V                E   A   +  M E G+ PD   YT L++  C+  
Sbjct: 683 VVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV-- 577
           NLQ A  ++++ +   +       +  + S C RG    A  L+  +S      DS    
Sbjct: 743 NLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMS 802

Query: 578 ILLKSLADAREVE 590
           +L + +  AR+V+
Sbjct: 803 VLHRGILKARKVQ 815



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 220/537 (40%), Gaps = 72/537 (13%)

Query: 26  PARKWTPLLEQTLHQLGLRDSLSPSLV----ARVINPY--LLTHHSLALGFFNWASQQPN 79
           PA ++    EQ ++    +DS+    +    +RV+  +  L    +LA  FF    ++  
Sbjct: 34  PAAQYPIAEEQAVYTYS-KDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQL-KESG 91

Query: 80  FTHSPLSYHSILKSLSLSR----------------------QINAIDSVLKQVKVNKITL 117
           F H+  +Y ++++ L   R                       I A+  VL++        
Sbjct: 92  FQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGE 151

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEI--CNSLLAVLASDGYIDNA 173
            SSV   ++  L++       F    +  F  +  G  P I  CN L+  L   G ID A
Sbjct: 152 HSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMA 211

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN-GSVIAVLI 232
           + ++  +   G+  +   +G+FI   C     G     +D  R+ E + +N  +V     
Sbjct: 212 VAIYRHLKRLGLNPNDYTYGIFIKALCRK---GNFEEAVDVFREMEEAGVNPNAVTCSTY 268

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I G C  KR +  ++ L  LR      D  AY  V   F     + E E V       G+
Sbjct: 269 IEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGI 328

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           AP       +I G ++    C+A  L +                            A+  
Sbjct: 329 APDG-----YIYGALIHA-YCKAGNLLQ----------------------------AVAL 354

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            N M+  G       +S++ + LC+   + E+V+ +K    +  F D   YN++V  LC 
Sbjct: 355 HNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCK 414

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G++ EA  ++ EMK + +  DV  Y +L+   C +  L  AK ++++M   G   ++ T
Sbjct: 415 LGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVT 474

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           YNIL+  FS  G  + AL L   +  +G+ P++ T+  ++EGLC    ++ A    N
Sbjct: 475 YNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLN 531



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 5/227 (2%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M E G  P   T S   + LC   +SD   E  + L A ++  D  +Y  ++ 
Sbjct: 246 AVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIR 305

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C+  +L+EA  V  +M  +G+ PD   Y +L+ A C+   L  A  L + M ++G   
Sbjct: 306 GFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKT 365

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N    + ++    E+G     +  F    + G+  D   Y  +++ LC+   ++ A E+ 
Sbjct: 366 NCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELL 425

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
           N+     + L     +T +   C +G  + A  +      RG+  D+
Sbjct: 426 NEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDI 472



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N L+++  E G+I+ A+ ++ ++   G+ P+  TY   ++ LC++ N + A +VF +   
Sbjct: 196 NFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEE 255

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             V       ST++  LC      +  + LR L +
Sbjct: 256 AGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRA 290


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 198/465 (42%), Gaps = 16/465 (3%)

Query: 75  SQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           S    F  SP  ++Y+++L +      +    ++L ++K + +      Y  ++ +  + 
Sbjct: 228 STMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARL 287

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG------VE 186
              ++A  V   +  N  +      N L A L   G +D A ++ DEM   G      V 
Sbjct: 288 GWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVT 347

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
           ++T+    F  +   +A     L +L+E+R  E  +    V   ++I G CK   +E A 
Sbjct: 348 YNTLADACFKCRCSSDA-----LRLLEEMR--EKGVKATLVTHNIVIKGLCKDGELEGAL 400

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
             L+++      PD I Y  +       G++ +   ++ +  + G+   T      +  L
Sbjct: 401 GCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNL 460

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTL 365
             E+R  EA+ L +      F  D+     ++ +     +   A+  ++ MIEK   P++
Sbjct: 461 CKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSI 520

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
           ST + L K L +  +  E ++    L       D  +YN+++   C  G L  A+    +
Sbjct: 521 STYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNK 580

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M      PDV   N+LM   C    L  A KL++     G   ++ TYN LI    + G+
Sbjct: 581 MVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGD 640

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           ++ AL  F +M  +G+ PDA TY  +L  L +    + A  + +K
Sbjct: 641 VDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHK 685



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 172/410 (41%), Gaps = 10/410 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+    S G + +AL     M   G+    + +   +   C    LG+  ++L   R 
Sbjct: 208 NLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALL--ARM 265

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +++ +         ++  + +   +++A KV++ +     +PD   Y ++A      G V
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 278 FEREVVLKKKRKLG-VAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDD 332
            E   +  +  +LG + P    Y          R   +A    +E+ E  V       + 
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNI 385

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           V+  L       +   A+   N M + G  P + T + L    CK     +   +   + 
Sbjct: 386 VIKGL---CKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMV 442

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  + N ++  LC   R  EA G++Q   ++G  PD   Y ++M A  +E    
Sbjct: 443 RRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSE 502

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
           PA +LWD+M     + ++ TYN LI   S +G ++ A+   + ++EKG+ PD TTY  ++
Sbjct: 503 PALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIII 562

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
              C+E +L+ AF+  NK V +         +T M  LC  G    A KL
Sbjct: 563 HAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKL 612



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 208/509 (40%), Gaps = 47/509 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++ + +    I     V++ +  N    D   Y  +   L Q     +AF + +E+
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM 335

Query: 146 KFNCEDIG---PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
               E +G   P++   N+L           +AL++ +EM  +GV+ + +   + I   C
Sbjct: 336 ----ERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLC 391

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           ++ +L   L  L+++   ++ +    +    +IH  CK   + +A+ ++DE+  R  K D
Sbjct: 392 KDGELEGALGCLNKMA--DDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLD 449

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                 V           E + +L+   + G  P    Y   +     E     A  L +
Sbjct: 450 TFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWD 509

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            ++  K T      N LI  +S +   + AI   N ++EKG VP  +T + +    CK  
Sbjct: 510 EMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEG 569

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             +   + +  +  N +  D+ + N +++ LC +G+L +A  + +    KG   DV  YN
Sbjct: 570 DLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYN 629

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L++  C++  +  A   +  M A G   +  TYN+++S  SE G  E A  + H + E 
Sbjct: 630 TLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689

Query: 500 GV--------------------APDATT---------------YTSLLEGLCQETNLQAA 524
           G                       DA T               YT L+ GLC     + A
Sbjct: 690 GTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEA 749

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRR 553
             + ++ +   + +  S   T M  L +R
Sbjct: 750 KAILDEMMQKGMSVDSSTYITLMEGLVKR 778



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N++V   C+ G L +A   +  M+  GL PD   YN+L+ A CR+ +L  A+ L  +M
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G +    TYN L+S ++ +G I+ A ++   M   G  PD  TY  L  GLCQ   +
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 522 QAAFEV 527
             AF +
Sbjct: 326 DEAFRL 331



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 42/278 (15%)

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL+AL  S S+  P++++  F  ++     P   T + L    C +    + +     + 
Sbjct: 173 VLSALARSPST-SPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQ 231

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D  +YN +++  C  G L EA  ++  MK+ G+ P    YN+L+ A  R   ++
Sbjct: 232 GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIK 291

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE------------------------- 487
            A K+ + M A+G   +L TYN+L +   + G+++                         
Sbjct: 292 QATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTL 351

Query: 488 -----------GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
                       ALRL   M EKGV     T+  +++GLC++  L+ A    NK  +  +
Sbjct: 352 ADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGL 411

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
                  +T + + C+ G+   A  L+     RGL  D
Sbjct: 412 APDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLD 449


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 189/441 (42%), Gaps = 35/441 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE- 144
           +Y ++++      +++  +SV  +++   +  D  VY  ++      +N  KA +V+   
Sbjct: 297 AYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSM 356

Query: 145 ----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
               +K NC      I + +L  L   G     + MF+E    G+      + +     C
Sbjct: 357 ISRGIKTNCV-----IFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALC 411

Query: 201 ENAKLGQVLSMLDEVR--------KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
           +  K+   + MLDE++        K   ++ING          F +GK +E A  +  E+
Sbjct: 412 KLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGY---------FLQGKPIE-AQSLFKEM 461

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
             R  KPD +AY ++A  F    + FE   +L      GV P +  ++  I GL    ++
Sbjct: 462 EERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKV 521

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSV-------SSIDPRSAIVFFNFMIEKGRVPTL 365
            EA+E    +      I  ++  AL+           S + + A +    M+E    P+ 
Sbjct: 522 EEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK 581

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
              S +   LC     +    ++ +     +  D  +Y +M++  C +  L EA+ + ++
Sbjct: 582 VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKD 641

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           MK +G+ PD   Y  ++   C+ + LR A +L+  M   G   ++  Y ++I      G 
Sbjct: 642 MKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGH 701

Query: 486 IEGALRLFHNMLEKGVAPDAT 506
            E A +L++ M++ G+ P AT
Sbjct: 702 TEIAFQLYNEMIDMGMTPGAT 722



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 117/532 (21%), Positives = 206/532 (38%), Gaps = 62/532 (11%)

Query: 46  SLSPSLVARVINPYLLTHH-SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           S  P+    +   YL  ++ SLA  +F     Q  F+H+  +Y SI++ L        +D
Sbjct: 56  SFEPNTFKILQKLYLYQNNPSLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLD 115

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNT----QKAFSVFNEVKFNCED--------- 151
           S+   +  +           +  SL +G N        F+ FN     C           
Sbjct: 116 SLFLDIIDHSKQDPCFEINVLFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAID 175

Query: 152 ----------IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
                     I P I   N L+  L     +D AL +F      G+ F+   + + I   
Sbjct: 176 FLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKAL 235

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C+      V+ + DE++  E  + + S      I G CK  R +  + VL + R R    
Sbjct: 236 CKKGDWENVVRVFDEMK--EAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHV 293

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
              AY  V   F     + E E V  +  K G+ P    Y   + G       C ++   
Sbjct: 294 HKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGY------CNSRNFD 347

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +                            A+  +  MI +G        S +   L +  
Sbjct: 348 K----------------------------ALAVYKSMISRGIKTNCVIFSCILHCLDEMG 379

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           ++ E+V++++    +  F D ++YN++   LC  G++ +A G++ E+K   LD D+  Y 
Sbjct: 380 RALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYT 439

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+     +     A+ L+ +M   G   ++  YN+L + F        A+ L + M  +
Sbjct: 440 TLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQ 499

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           GV P++TT+  ++EGLC    ++ A E FN      V ++  I +  +   C
Sbjct: 500 GVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYC 551



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 143/362 (39%), Gaps = 14/362 (3%)

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           + R +  +D + ++ K + + +D   Y  +  +L +      A  + +E+K    D+  +
Sbjct: 378 MGRALEVVD-MFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMK 436

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
              +L+      G    A  +F EM  RG +   + + V    F  N    + + +L+ +
Sbjct: 437 HYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYM 496

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             +   +   S    +II G C   +VEEA +  + L+    +     Y  +   +    
Sbjct: 497 ESQ--GVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGY-CEA 553

Query: 276 SVFERE-------VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           ++ E+        ++L+   ++ + P    Y +    L     +  A  L  + +   FT
Sbjct: 554 ALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFT 613

Query: 329 IDDDVLNALIGSVSSID--PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
            D      +I      +  P +  +F + M E+G  P   T + +    CK N   E  E
Sbjct: 614 PDAVTYTIMINGYCKTNCLPEAHELFKD-MKERGITPDAVTYTIMINGYCKMNCLREAHE 672

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++K +       D+ +Y V++  L  SG    A+ +  EM   G+ P  +    + +A  
Sbjct: 673 LFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATLKRCIQKANK 732

Query: 447 RE 448
           R+
Sbjct: 733 RQ 734



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 128/344 (37%), Gaps = 80/344 (23%)

Query: 367 TLSNLSKNLCKRNKSDELVEVY---KVLSAND----YFTDME------------------ 401
           T + + K LCK+   + +V V+   K    +D    Y T +E                  
Sbjct: 227 TYTIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDY 286

Query: 402 ----------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                     +Y  ++   C   +L EA  V  EM+++GL PDV  Y +L+   C     
Sbjct: 287 RTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNF 346

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  ++  M + G   N   ++ ++    E+G     + +F    E G+  D   Y  L
Sbjct: 347 DKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNIL 406

Query: 512 LEGLCQETNLQAAFEVFN--KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----R 564
            + LC+   +  A  + +  KS+  DV +     +T +     +G  + A  L      R
Sbjct: 407 FDALCKLGKVDDAVGMLDELKSMQLDVDMKH--YTTLINGYFLQGKPIEAQSLFKEMEER 464

Query: 565 GLSSDL--------------------------------GHSDSHVILLKSLADAREVEMA 592
           G   D+                                 +S +H I+++ L  A +VE A
Sbjct: 465 GFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEA 524

Query: 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
            E   W++  S     EIS E++ +L +      ++   H L+E
Sbjct: 525 EEFFNWLKGESV----EISVEIYTALVNGYCEAALIEKSHELKE 564


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 209/490 (42%), Gaps = 25/490 (5%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL+ LA   +      ++++M   G+        + +   C   ++G+ L+++  + +R 
Sbjct: 102 LLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR- 160

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
              I   V    +I G C   R+ +A  +   ++   C P+ I Y  + +     G++  
Sbjct: 161 -GYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI-- 217

Query: 280 REVVLKKKRKL---------GVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTI 329
             + LK  +++            P    Y   I  L  +RR  EA++L  E+ V G    
Sbjct: 218 -SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQG---- 272

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               +   + S +S+    A   FN M+ +G  P + T + L   LCK  K  E  ++ +
Sbjct: 273 ----MTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLE 328

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           V+       ++ +YN ++   C  G L  A  +   M  KG +PDV  Y  L+   C+  
Sbjct: 329 VMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTS 388

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A KL++ M   G   ++KTY  L++   + G++  A +LF  M   G+  D   Y 
Sbjct: 389 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 448

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             L GLC+   L  A E+FNK  ++++ L     +  +  LC+ G    A +L   L  +
Sbjct: 449 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE 508

Query: 570 LGHSD--SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627
               D  ++ I++       +V  A    + ++++  T  +   A L      S   E +
Sbjct: 509 ELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKV 568

Query: 628 LLLLHALQEK 637
           + LLH + ++
Sbjct: 569 VELLHMMVQR 578



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 32/417 (7%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+  L  +  I  A  +F  M   G   + I +G  +   C    +   L +  E+   
Sbjct: 171 TLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLND 230

Query: 219 ENSM-INGSVIAV---LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEFKL 273
            +   IN   + +   +II   CK +R +EA  + +E++++   P  I+Y  ++ EE K 
Sbjct: 231 SSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKR 290

Query: 274 M--------------------------GSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +                          G V E + +L+   + G+ P    Y   I G  
Sbjct: 291 LFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 350

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
           +   +  A+EL   + S     D      LI G   +     A+  +N M++ G+ P + 
Sbjct: 351 LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVK 410

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T   L   L +  K  +  +++ V+       D+  Y + ++ LC +G L EA  +  ++
Sbjct: 411 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKL 470

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K   +  D+  +N L++  C+   L  A +L++++       ++ TYNI+I +F   G++
Sbjct: 471 KSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQV 530

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
             A  LF  M + G  PD  TY +L+ G  +   L+   E+ +  V  DV L  +IL
Sbjct: 531 VKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 587



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 44/296 (14%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N   G++++I    A  FF+ M+     P LS+ ++L   L K     ++  +Y  +  +
Sbjct: 69  NCKTGNITAIQ---AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLS 125

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D  + N++++ LC   R+ E   V+  + R+G  PD+  Y +L++  C E  +  A
Sbjct: 126 GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKA 185

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK------GVAPDATTY 508
             L+ +M   GC+ N  TY  L+      G I  AL+L   ML           P   +Y
Sbjct: 186 ALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISY 245

Query: 509 TSLLEGLC------------QETNLQA---------------AFEVFNKSVNHDVMLARS 541
           + +++ LC            +E  +Q                A  +FN+ VN  V     
Sbjct: 246 SIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVV 305

Query: 542 ILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHV---ILLKSLADAREV 589
             +  +  LC+ G  + A  LL     RG+  +L   +S +    L+  L  ARE+
Sbjct: 306 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 361


>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
 gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
          Length = 800

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 141/634 (22%), Positives = 260/634 (41%), Gaps = 83/634 (13%)

Query: 19  SASNRTRPAR---KWTPL----LEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFF 71
           SA+N T PA+   +  PL    +  TL+ L  +  L+ S+ + + NP +  + ++     
Sbjct: 47  SANNHTDPAKDDDQQQPLQSHKIVDTLYNLKNQPHLAFSIFSHLKNPDIPAYAAIIRILC 106

Query: 72  NWASQ-----------QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           +W              Q N   +      +L +LSL   I+ ID   +    ++ +    
Sbjct: 107 HWGLHKMLHSIFLHLHQNNNDFTSFDISHLLDTLSLPHHID-IDLEKEDTVKHRSSFLIQ 165

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
           VY  ++ S +      +A +   ++K       P I   N L+  L ++G +D AL ++ 
Sbjct: 166 VYDALVKSYVTAGMLDEAINALFQIKR--RGFLPHIFTFNYLMNKLIANGKVDAALAIYK 223

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           ++   G+  +   + + I  FC    L +  ++  E+      +I  +      I G C 
Sbjct: 224 QLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMEL--CGVIPNAYAYTTYIEGLCA 281

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
            +R +  ++VL   +      D  AY  V   F     +   EVVL    K  +      
Sbjct: 282 NQRSDFGYQVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARC 341

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE 358
           Y E I G       C+A +L +                            A+   N M  
Sbjct: 342 YSELIRGY------CKAGDLSK----------------------------ALALHNDMES 367

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG       +S + +  C++    ++VE +K       F D  SYN++V  LC   ++ +
Sbjct: 368 KGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLDEVSYNIVVDALCKLEKVDQ 427

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++ EMK K +D D+  Y +L+   C    L  A +++++M   G   ++ T+NIL++
Sbjct: 428 AVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLA 487

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNH 534
            FS  G    AL+L+  M  + + P+A T+  ++EGLC    +  A   F    +KS+++
Sbjct: 488 AFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGGKVTEAEAFFCNMEDKSIDN 547

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREV 589
                       +   C   H   A++L      RGL  D G+      LL+ L +  E 
Sbjct: 548 --------YGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIYK---LLEKLCEEGEK 596

Query: 590 EMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623
           + A+    W+ ++   +  E S +++  + ++ Y
Sbjct: 597 DRAL----WLLKTMLDLNMEPSKDMYGKVITACY 626



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/508 (20%), Positives = 220/508 (43%), Gaps = 31/508 (6%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A ++ N      +Y ++++      +++  + VL  ++  ++  D+  Y  +I    +  
Sbjct: 294 AWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGYCKAG 353

Query: 134 NTQKAFSVFNE-----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           +  KA ++ N+     +K NC      I +++L      G     ++ F       +   
Sbjct: 354 DLSKALALHNDMESKGIKTNCV-----IVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLD 408

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
            + + + +   C+  K+ Q +++LDE++ ++  M    +    +I+G+C   ++ +AF+V
Sbjct: 409 EVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDM--DIMHYTTLINGYCHVGKLVDAFRV 466

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            +E+  +  +PD + + I+   F   G   E   + +  +   + P    +   I GL +
Sbjct: 467 FEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCI 526

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
             ++ EA    E           D   A+I G   +     A   F  + E+G +     
Sbjct: 527 GGKVTEA----EAFFCNMEDKSIDNYGAMITGYCEAKHTEKASELFFELSERGLLMDRGY 582

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
           +  L + LC+  + D  + + K +   +     + Y  +++    +G +R A  V   ++
Sbjct: 583 IYKLLEKLCEEGEKDRALWLLKTMLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILR 642

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           + GL PD+  Y +++  CCR++ L  A+ L+  M   G   +L T+ +L+    +    E
Sbjct: 643 KSGLTPDIFTYTTMINVCCRQNRLSEARNLFQDMKHRGIKPDLVTFTVLLDGHLKRVHSE 702

Query: 488 GALR-----------LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
              R           ++  M    + PD   YT+L++G C+   L+ A  ++++ +   V
Sbjct: 703 AFARKRKEVNLAASNIWKEMQNTEIRPDVICYTALIDGHCKVDRLEDAIGLYDEMMYRGV 762

Query: 537 MLARSILSTFMISLCR-RGHF-LVATKL 562
              R+   T ++S CR RG   +V TKL
Sbjct: 763 EPDRAT-CTALLSGCRNRGDVDMVLTKL 789


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 145/585 (24%), Positives = 237/585 (40%), Gaps = 83/585 (14%)

Query: 26  PARKWTPLLEQTLHQLGLRDSLSPSLVARVI-----NPYLLTHHSLALGFFNWASQQPNF 80
           P++ +T LL+    +    ++L PSL    +     NP L  H   AL FF W   Q  F
Sbjct: 42  PSQIFTILLQPQWRKNPSFNTLIPSLTPTHLSSLFNNPNL--HPLTALNFFKWIHYQHGF 99

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
            H+  SY  +L  L  +  + A ++V   +   K  + S   RF++  L     T   FS
Sbjct: 100 IHTVHSYQPLLFILVRNGFLRAAENVRNSMI--KSCVSSHEARFVLNLL-----THHEFS 152

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
                      +     N L  VL+  G ID    +F +M + GVE + I F   +   C
Sbjct: 153 -----------LSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHC 201

Query: 201 ENAKLGQVLSMLDEVRK------RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
              K+G V+     V K       +      S     +I G+CK   + +A+KV + +  
Sbjct: 202 ---KIGNVV-----VAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQ 253

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
             C  + ++Y  +   F  +G + E   +  + ++ G  P    Y   +         CE
Sbjct: 254 EGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF------CE 307

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                     GK T                    A+ FF  M+E G  P + T + L   
Sbjct: 308 V---------GKET-------------------EALKFFEEMVENGIEPNVYTYTVLIDY 339

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            CK  K DE +E+   +      + +  +N ++   C  G + +A  V+  MK   + P+
Sbjct: 340 FCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPN 399

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN L+   CR+  +  A  L ++M+ +  S NL TYN LI    +   ++ A RL H
Sbjct: 400 SRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHH 459

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRR 553
            M++ G  PD  T+ + ++ LC+   ++ A +VF +S+      A   L T +I   C+ 
Sbjct: 460 LMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVF-ESLKEKHAEANEFLYTALIDGYCKA 518

Query: 554 -----GHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
                 H L    L  G      +S +  +LL  L    +VE A+
Sbjct: 519 EKFSDAHLLFKRMLFEGC---FPNSITFNVLLDGLRKEGKVEDAM 560



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 205/515 (39%), Gaps = 49/515 (9%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+A     G    ALK F+EM   G+E +   + V I  FC+  K+ + + ML  +   E
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTML--E 358

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +++  V    +I G+CK   +E+A  VLD +++ +  P+   Y  +   F    S+  
Sbjct: 359 KGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDR 418

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +L K  +  ++P    Y   I GL   R +  A  L  +++   F  D     A I 
Sbjct: 419 AMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFID 478

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +  +     A   F  + EK         + L    CK  K  +   ++K +     F 
Sbjct: 479 CLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFP 538

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +  ++NV++  L   G++ +A  ++  M +    P V  Y  L+E   RE     A    
Sbjct: 539 NSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFL 598

Query: 459 DQMFASGCSGNLKT-----------------------------------YNILISKFSEV 483
           DQM +SGC  N+ T                                   Y++L++ +  +
Sbjct: 599 DQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCI 658

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+++ A  +   M + G  P   TY+ LL+ L         FE +NK     + L  + +
Sbjct: 659 GQLDSAFGVLIRMFDTGCEPSRQTYSILLKHL--------IFEKYNKE-GMGLDLNSTNI 709

Query: 544 STFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           S    ++ +   F + T L   +     + + +++  L+K L     + +A      ++E
Sbjct: 710 SVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKE 769

Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
           S  +  + I   L +S       E  L LL ++ E
Sbjct: 770 SGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 223/522 (42%), Gaps = 61/522 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAV 163
           VL  +K+NK+  +S  Y  +I    + K+  +A ++ N++  N   + P +   N+L+  
Sbjct: 387 VLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYEN--KLSPNLVTYNTLIHG 444

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE---- 219
           L     +D+A ++   M   G       F  FI   C+  K+ Q   + + ++++     
Sbjct: 445 LCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEAN 504

Query: 220 ----NSMING-------------------------SVIAVLIIHGFCKGKRVEEAFKVLD 250
                ++I+G                         S+   +++ G  K  +VE+A  ++D
Sbjct: 505 EFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVD 564

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            +   + KP    Y I+ EE  L  S F+R  + L +    G  P    Y  FI     +
Sbjct: 565 VMGKFDAKPTVHTYTILIEEI-LRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQ 623

Query: 310 RRICEAKELGEVIVSGKFTIDD---DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
            R+ EA+E+   I      +D    DVL    G +  +D  SA      M + G  P+  
Sbjct: 624 GRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLD--SAFGVLIRMFDTGCEPSRQ 681

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV--SFLCTSGRLREAYGVIQ 424
           T S L K+L           +++  +      D+ S N+ V  + +           + +
Sbjct: 682 TYSILLKHL-----------IFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFE 730

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           +M  +G  P+V+ Y+ L++  C+ + L  A +L++ M  SG S +   +N L+S   ++G
Sbjct: 731 KMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLG 790

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             E ALRL  +M+E        +Y  L+ GL ++ N + A E+F   ++        +  
Sbjct: 791 MHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWK 850

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLG---HSDSHVILLKSL 583
             +  L R+G+    ++ LR +    G   HSD+H +L + L
Sbjct: 851 VLLDGLVRKGYVDECSQ-LRDIMEKTGCRLHSDTHTMLSQEL 891


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 228/534 (42%), Gaps = 49/534 (9%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F  ASQ  ++     +++S++++ + S     +  V  ++K  +       +  +  +  
Sbjct: 67  FKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYG 126

Query: 131 QGKNTQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFD--EMSHRGVE 186
           +    +KA  +F  +  +F C        NS+L V+  +G    AL+ ++        + 
Sbjct: 127 KAHLPEKAIELFGRMVDEFQCRRTVRSF-NSVLNVIIQEGLFHRALEFYECGVGGKTNIS 185

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEA 245
            + + F + I   C   KLG V   ++  R+         V     ++ G CK  R++EA
Sbjct: 186 PNVLSFNLVIKAMC---KLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             +LDE++I  C P  + + ++       G +     ++      G  P    Y   I G
Sbjct: 243 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 302

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPT 364
           L ++ ++ +A  L + +V+ K   +D     LI               N ++++GR V  
Sbjct: 303 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI---------------NGLVKQGRSVDG 347

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           +  LS+L +               +   AN+Y     +Y+ ++S L    +  EA G+ +
Sbjct: 348 VHLLSSLEE---------------RGHHANEY-----AYSTLISGLFKEEKSEEAMGLWK 387

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           +M  KG  P++  Y++L++  CRE  L  AK++  +M   GC+ N  TY+ LI  F + G
Sbjct: 388 KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTG 447

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             + A+R++  M +    P+   Y+ L+ GLC++  L+ A  ++   +   +       S
Sbjct: 448 NSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 507

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV----ILLKSLADAREVEMAIE 594
           + +  LC  G   V  KL   +      S   V    ILL++L     +  AI+
Sbjct: 508 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAID 561



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 174/405 (42%), Gaps = 11/405 (2%)

Query: 151 DIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           +I P +   N ++  +   G +D A+++F EM+ +  E     +   +   C+  ++ + 
Sbjct: 183 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           + +LDE++         SV   ++I+G CK   +    K++D + ++ C P+ + Y  + 
Sbjct: 243 VLLLDEMQIE--GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 300

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
               L G + +   +L +       P    Y   I GL+ + R  +   L   +      
Sbjct: 301 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 360

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            ++   + LI G         A+  +  M+EKG  P +   S L   LC+  K DE  E+
Sbjct: 361 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 420

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       +  +Y+ ++     +G  ++A  V +EM +    P+   Y+ L+   C 
Sbjct: 421 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 480

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML--EKGVAPDA 505
           +  LR A  +W  M   G   ++  Y+ +I      G +E  L+LF+ ML  E    PD 
Sbjct: 481 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 540

Query: 506 TTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTF 546
            TY  LL  LC++ ++  A ++ N    +  N D++     L+  
Sbjct: 541 VTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 191/467 (40%), Gaps = 67/467 (14%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           +  +I ++ +     +A  VF E+    CE      C +L+  L  +  ID A+ + DEM
Sbjct: 191 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYC-TLMDGLCKEDRIDEAVLLLDEM 249

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   S++ F V I   C+   + +V  ++D +  +    +   V    II+G C   
Sbjct: 250 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK--GCVPNEVTYNTIINGLCLKG 307

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++++A  +LD +   +C P+ + Y  +       G   +   +L    + G       Y 
Sbjct: 308 KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 367

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMI 357
             I GL  E +  EA  L + +V      +  V +ALI  +     +D    I+    M+
Sbjct: 368 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCE--MV 425

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            KG  P   T S+L K   K   S + + V+K ++ N+   +   Y+V++  LC  G+LR
Sbjct: 426 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 485

Query: 418 EAYGVIQEMKRKGL-------------------------------------DPDVSFYNS 440
           EA  +   M  +GL                                      PDV  YN 
Sbjct: 486 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 545

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI---------------------LISK 479
           L+ A C+++ +  A  L + M   GC+ +L T NI                     L+ +
Sbjct: 546 LLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVR 605

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +   I GA ++   ML+K + P+A+T+  ++  LC+   +QA  +
Sbjct: 606 LHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIID 652



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     + Y +++  L    +++    +L ++     T ++  Y  +I    +  N+Q
Sbjct: 395 QPNI----VVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQ 450

Query: 137 KAFSVFNEV-KFNCEDIGPEICNS-LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           KA  V+ E+ K NC  +  EIC S L+  L  DG +  A+ M+  M  RG+    + +  
Sbjct: 451 KAIRVWKEMAKNNC--VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 508

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I   C    +   L + +E+  +E+      V   +++   CK   +  A  +L+ +  
Sbjct: 509 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 568

Query: 255 RECKPDFIAYRI 266
           R C PD I   I
Sbjct: 569 RGCNPDLITCNI 580


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 199/436 (45%), Gaps = 19/436 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L+  G ++ A ++  +M   G+E S   +   I  +CE  ++ +   + +E+  
Sbjct: 241 NVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLS 300

Query: 218 RENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           R      G+V  V+    I++G CK  RV +A K+LD +  +   PD ++Y  +   +  
Sbjct: 301 R------GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR 354

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +G++ E  ++  + R   +AP    Y   I GL     +  A  L + ++  K   D DV
Sbjct: 355 LGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMI--KHGPDPDV 412

Query: 334 LNALI---GSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYK 389
                   G     +   A   F+ M+ +G  P   + ++ +   L K     +   + +
Sbjct: 413 FTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQE 471

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            + A  +  D+ +YNV +  L   G L+EA  ++++M   GL PD   Y S++ A     
Sbjct: 472 EMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAG 531

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            LR A+ L+ +M + G   ++ TY +LI  ++  G ++ A+  F  M EKGV P+  TY 
Sbjct: 532 HLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYN 591

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L+ GLC+   +  A+  F +     +   +   +  +   C  GH+  A +L + +   
Sbjct: 592 ALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDR 651

Query: 570 LGHSDS--HVILLKSL 583
               DS  H  LLK L
Sbjct: 652 EIQPDSCTHRSLLKHL 667



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 227/547 (41%), Gaps = 114/547 (20%)

Query: 49  PSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLS----------- 97
           P L+ RV+N  +     +AL FF WA +Q  F  S +SY  IL  L+ +           
Sbjct: 47  PKLLVRVLNT-VRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVME 105

Query: 98  -----RQINAIDSVLKQVKVN----KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
                +  N +  V+   +V+    K+ LD  ++ ++  SL++     K   VF   K  
Sbjct: 106 KVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLE-----KCLLVF--YKMV 158

Query: 149 CEDIGPEI--CNSLLAVLAS-DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
            + + P++  CN +L +L   D  ID A ++++ M   G+  + + +             
Sbjct: 159 SKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYN------------ 206

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
               +MLD                      FCK   V+EA ++L +++   C P+ + Y 
Sbjct: 207 ----TMLDS---------------------FCKKGMVQEALQLLFQMQAMGCSPNDVTYN 241

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++       G + + + +++   +LG+      Y   I G   + +I EA  LGE     
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEE---- 297

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                         M+ +G VPT+ T + +   LCK  +  +  
Sbjct: 298 ------------------------------MLSRGAVPTVVTYNTIMYGLCKWGRVSDAR 327

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++  V+   +   D+ SYN ++      G + EA+ +  E++ + L P V  YN+L++  
Sbjct: 328 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGL 387

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR   L  A +L D+M   G   ++ T+   +  F ++G +  A  LF  ML +G+ PD 
Sbjct: 388 CRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDR 447

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI------LSTFMISLCRRGHFLVA 559
             Y + + G  +  +   AF +       + MLAR         + F+  L + G+   A
Sbjct: 448 FAYITRIVGELKLGDPSKAFGM------QEEMLARGFPPDLITYNVFIDGLHKLGNLKEA 501

Query: 560 TKLLRGL 566
           ++L++ +
Sbjct: 502 SELVKKM 508



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 205/484 (42%), Gaps = 54/484 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L S      +     +L Q++    + +   Y  ++  L      ++A  +  +
Sbjct: 203 VTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQD 262

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     ++     + L+      G I+ A ++ +EM  RG   + + +   ++  C   K
Sbjct: 263 MLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLC---K 319

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKP 259
            G+V     + RK  + M+N +++  L+     I+G+ +   + EAF +  ELR R   P
Sbjct: 320 WGRV----SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAP 375

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTNDYREFILGLIVERRICEAK 316
             + Y  + +    +G +   +V ++ K ++   G  P    +  F+ G      +  AK
Sbjct: 376 SVVTYNTLIDGLCRLGDL---DVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAK 432

Query: 317 ELGEVIVSGKFTIDD-DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL + +++     D    +  ++G +   DP  A      M+ +G  P L T +     L
Sbjct: 433 ELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 492

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA---------------- 419
            K     E  E+ K +  N    D  +Y  ++     +G LR+A                
Sbjct: 493 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSV 552

Query: 420 --YGVIQ-----------------EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             Y V+                  EM  KG+ P+V  YN+L+   C+   +  A   + +
Sbjct: 553 VTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAE 612

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M A G S N  TY ILI++   +G  + ALRL+ +ML++ + PD+ T+ SLL+ L ++  
Sbjct: 613 MQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYK 672

Query: 521 LQAA 524
           L   
Sbjct: 673 LHVV 676



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 25/200 (12%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SY+V++  L  +G +R AY V++++        V   N +++     ++  P+ KL    
Sbjct: 83  SYSVILDILARNGLMRSAYCVMEKVV------SVKMENGVIDVVSSSEVSMPSVKL---- 132

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL-CQETN 520
                       ++L+  + +   +E  L +F+ M+ KG+ PD      +L  L  ++ N
Sbjct: 133 ----------ILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNN 182

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--- 577
           +  A EV+N  V   +       +T + S C++G    A +LL  + + +G S + V   
Sbjct: 183 IDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQA-MGCSPNDVTYN 241

Query: 578 ILLKSLADAREVEMAIEHIK 597
           +L+  L+ + E+E A E I+
Sbjct: 242 VLVNGLSHSGEMEQAKELIQ 261



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 88/209 (42%), Gaps = 2/209 (0%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   Y   I  L +  N ++A  +  ++ +N          S++      G++  A  +F
Sbjct: 481 DLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALF 540

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM  +G+  S + + V I  +    +L   L++L      E  +    +    +I+G C
Sbjct: 541 LEMLSKGIFPSVVTYTVLIHSYAVRGRLK--LAILHFFEMHEKGVHPNVITYNALINGLC 598

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K +++++A+    E++ +   P+   Y I+  E   +G   E   + K      + P + 
Sbjct: 599 KVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSC 658

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGK 326
            +R  +  L  + ++   + L  VI +G+
Sbjct: 659 THRSLLKHLNKDYKLHVVRHLENVIAAGE 687


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 181/408 (44%), Gaps = 7/408 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A +   G   +A+++FDEM+ R V  + I +   I    +   L     + D++  
Sbjct: 19  NVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVC 78

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               +   ++   +++ G C+  R+ E   +LDE+  ++  PD   Y I+ +     G  
Sbjct: 79  H--GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 136

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                +  K  K GV     DY   IL  GL  + ++  A+E+ + +V+        + N
Sbjct: 137 KAMLSLFGKYLKNGVT--IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 194

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   + +   A   F  M  +   P   T + L   LCK  +     ++   +  N
Sbjct: 195 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 254

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +E++N ++     +G+L + + V+ EM+  GL P+V  Y S++ A C+   +  A
Sbjct: 255 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 314

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D MF      N + YN +I  + E G  + A  L   M   G++P   TY  L++G
Sbjct: 315 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           LC ++ +  A E+ N   NH ++      +T + + C RG+   A  L
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 422



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/468 (20%), Positives = 196/468 (41%), Gaps = 14/468 (2%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNF-----------THSPLSYHSILKSLSLSRQ 99
           +  R + P  +T++++  G       +  F             + ++Y+ +L  L  + +
Sbjct: 41  MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGR 100

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           +    ++L ++   K+  D   Y  +   L +  +++   S+F +   N   IG   C+ 
Sbjct: 101 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 160

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L  DG +  A ++   + + G+  + + +   I  +C+  +L    S   +++ R 
Sbjct: 161 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 220

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    +    +I+G CK +R+  A  +L E++     P    +  + + +   G + +
Sbjct: 221 --IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 278

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +VL + ++ G+ P    Y   +       +I EA  + + +       +  V NA+I 
Sbjct: 279 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338

Query: 340 SVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +     P   A +    M   G  P++ T + L K LC +++  E  E+   LS +    
Sbjct: 339 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SYN ++S  C  G + +A  + Q M + G+   V  Y+ L+        L   + L+
Sbjct: 399 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 458

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
            +M  +    +   +NI++  +S+ G    A  L   ML+K    D T
Sbjct: 459 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDDT 506



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/445 (20%), Positives = 179/445 (40%), Gaps = 7/445 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            Y  +I   I+G + +  F + +++   C  + P     N LL+ L   G +     + D
Sbjct: 52  TYNTMIDGHIKGGDLEAGFRLRDQMV--CHGLKPNAITYNVLLSGLCRAGRMGETSALLD 109

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM+ + +      + +       N     +LS+  +  K  N +  G     ++++G CK
Sbjct: 110 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCK 167

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +V  A +VL  L      P  + Y  +   +   G +        + +   + P    
Sbjct: 168 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 227

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   I GL    RI  A++L   +         +  N LI +           +  + M 
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E G  P + +  ++    CK  K  E V +   +   D   + + YN ++      G   
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+ ++++MK  G+ P +  YN L++  C +  +  A+++ + +       +  +YN LI
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 407

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           S     G I+ AL L   M + G+     TY  L+ GL     L     ++ K + ++V+
Sbjct: 408 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 467

Query: 538 LARSILSTFMISLCRRGHFLVATKL 562
            + +I +  + +  + G+ + A  L
Sbjct: 468 PSNAIHNIMVEAYSKYGNEIKAEDL 492



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYNV+++ +  +GR  +A  V  EM  + + P+   YN++++   +   L    +L DQM
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N  TYN+L+S     G +     L   M  + + PD  TY+ L +GL +  + 
Sbjct: 77  VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 136

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +A   +F K + + V +     S  +  LC+ G   +A ++L+ L
Sbjct: 137 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 181



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  +YN++I+     G    A+ +F  M E+ V P+  TY ++++G  +  +L+A F + 
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 73

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           ++ V H +       +  +  LCR G     + LL  ++S
Sbjct: 74  DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS 113


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 183/423 (43%), Gaps = 41/423 (9%)

Query: 135 TQKAFSVFNEVKFNCE-DIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           ++   S+FN +  +C   + P  C    L+      G++++    F  +   G     I 
Sbjct: 72  SETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIV 131

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
               +   C+  ++G+ + +L + R  E   +  +V   +++ G C  KR EEA ++L  
Sbjct: 132 INQLLNGLCDGKRVGEAMDVLLQ-RMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHM 190

Query: 252 L---RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           +   ++  C P+ ++Y  V   F   G V +   +  +    G+ P    Y   I GL  
Sbjct: 191 MADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGL-- 248

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
               C+A+                            D   A+  F  MI+ G  P + T 
Sbjct: 249 ----CKAQLF--------------------------DRAEAV--FQQMIDNGVKPNIDTY 276

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L        K  E+V + + +SA     +  +Y  ++++LC +GR REA      M  
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIG 336

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KG+ P V+ Y  ++     +  L     L + M A+G S N   +NI  S +++ G I+ 
Sbjct: 337 KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDK 396

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A+ +F+ M ++G++PDA +Y +L++ LC+   +  A   FN+ +N  V     + S+ + 
Sbjct: 397 AMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVY 456

Query: 549 SLC 551
            LC
Sbjct: 457 GLC 459



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 191/453 (42%), Gaps = 13/453 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y  +I          K +++F E+      I P++    +++  L      D A  +F +
Sbjct: 206 YSTVINGFFTEGQVDKPYNLFLEMMD--RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQ 263

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGF 236
           M   GV+ +   +   I  +    K  +V+ ML+E+     + N    GS++  L     
Sbjct: 264 MIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYL----- 318

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  R  EA    D +  +  KP    Y I+   +   G++ E   +L      G++P  
Sbjct: 319 CKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNH 378

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNF 355
           + +  F         I +A ++   +     + D     ALI ++  +     A V FN 
Sbjct: 379 HIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQ 438

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MI +G  P +   S+L   LC  +K +++ E++  +       ++  +N ++  LC  GR
Sbjct: 439 MINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGR 498

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + E   ++  ++  G+ PDV  YN+L++  C    +  A KL + M + G   +  +YN 
Sbjct: 499 VMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNT 558

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           L+  + + G I+ A   F  ML  G+ P   TY ++L GL Q      A E++   +N  
Sbjct: 559 LLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                   +  +  LC+      A K+ + L S
Sbjct: 619 TKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCS 651



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 193/447 (43%), Gaps = 7/447 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++       Q++   ++  ++    I  D   Y  +I  L + +   +A +VF +
Sbjct: 204 VSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQ 263

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  N      +  N L+    S G     ++M +EMS  G + +   +G  +   C+N +
Sbjct: 264 MIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGR 323

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
             +     D +  +    I  SV    +++HG+     + E   +L+ +      P+   
Sbjct: 324 CREARFFFDSMIGKG---IKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHI 380

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           + I    +   G + +   +  K R+ G++P    Y   I  L    R+ +A+     ++
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +   T D  V ++L+  + ++D    +  +FF  M+  G  P +   + +  NLCK  + 
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFE-MLNVGIHPNIVFFNTILCNLCKEGRV 499

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            E   +   +       D+ SYN ++   C +G + EA  +++ M   GL PD   YN+L
Sbjct: 500 MEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTL 559

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C+   +  A   + +M ++G +  + TYN ++    +      A  L+ NM+  G 
Sbjct: 560 LHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGT 619

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVF 528
             D  TY  +L GLC+   +  A ++F
Sbjct: 620 KWDIYTYNIILNGLCKSNCVDEAIKMF 646



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/509 (20%), Positives = 214/509 (42%), Gaps = 28/509 (5%)

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK----FNCEDIGPEIC 157
           A+D +L+++       D+  Y  ++  L   K  ++A  + + +     ++C    P + 
Sbjct: 148 AMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCP---PNVV 204

Query: 158 N--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  +++    ++G +D    +F EM  RG+    + +   I   C+         + D  
Sbjct: 205 SYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCK-------AQLFDRA 257

Query: 216 RKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
                 MI+  V   +     +IHG+    + +E  ++L+E+     KP+   Y  +   
Sbjct: 258 EAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNY 317

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G   E           G+ P    Y   + G   +  + E  +L  ++V+   + +
Sbjct: 318 LCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPN 377

Query: 331 DDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
             + N    + +    ID   A+  FN M ++G  P   +   L   LCK  + D+    
Sbjct: 378 HHIFNIFFSAYAKCGIID--KAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVK 435

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           +  +       D+  ++ +V  LCT  +  +   +  EM   G+ P++ F+N+++   C+
Sbjct: 436 FNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 495

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           E  +   ++L D +   G   ++ +YN LI      G I+ A +L   M+  G+ PD+ +
Sbjct: 496 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFS 555

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           Y +LL G C+   + +A+  F K +++ +       +T +  L +   F  A +L   + 
Sbjct: 556 YNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 615

Query: 568 SDLGHSD--SHVILLKSLADAREVEMAIE 594
           +     D  ++ I+L  L  +  V+ AI+
Sbjct: 616 NSGTKWDIYTYNIILNGLCKSNCVDEAIK 644



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 183/456 (40%), Gaps = 62/456 (13%)

Query: 117 LDSSVYRFIIPS------LIQGKNTQKAFS----VFNEVKFNCEDIGPEICNSLLAVLAS 166
            DS + + I PS      ++ G  T+ A S    + N +  N       I N   +  A 
Sbjct: 331 FDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAK 390

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G ID A+ +F++M  +G+    + +G  I   C   KLG+V    D+   + N MIN  
Sbjct: 391 CGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC---KLGRV----DDAEVKFNQMINEG 443

Query: 227 VIAVLII-----HGFC---KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           V   +++     +G C   K ++VEE F  +  + I    P+ + +  +       G V 
Sbjct: 444 VTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIH---PNIVFFNTILCNLCKEGRVM 500

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E + ++     +GV P    Y   I G  +   I EA +L E +VS              
Sbjct: 501 EGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS-------------- 546

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                                G  P   + + L    CK  + D     ++ + +N    
Sbjct: 547 --------------------VGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITP 586

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
            + +YN ++  L  + R  EA  +   M   G   D+  YN ++   C+ + +  A K++
Sbjct: 587 GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMF 646

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             + + G   N+ T+NI+I    + G  E A+ LF  +   G+  +  TY  ++E L +E
Sbjct: 647 QNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEE 706

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            +L+    +F+    +       +L+  +  L  RG
Sbjct: 707 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 742



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/505 (22%), Positives = 211/505 (41%), Gaps = 57/505 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN---CEDIGPEIC--NSL 160
           +  +++   ++ D+  Y  +I +L +      A     EVKFN    E + P+I   +SL
Sbjct: 400 IFNKMRQQGLSPDAVSYGALIDALCKLGRVDDA-----EVKFNQMINEGVTPDIVVFSSL 454

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +  L +    +   ++F EM + G+  + + F   +   C+  ++ +   ++D +   E 
Sbjct: 455 VYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSI---EC 511

Query: 221 SMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +   VI+   +I G C    ++EA K+L+ +     KPD  +Y  +   +   G +  
Sbjct: 512 MGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDS 571

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLN 335
                +K    G+ P    Y   + GL   +R  EAKEL   +++     D    + +LN
Sbjct: 572 AYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILN 631

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            L  S + +D   AI  F  +  KG    + T + +   L K  + ++ ++++  + AN 
Sbjct: 632 GLCKS-NCVD--EAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 688

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC-REDLLRPA 454
              ++ +Y ++V  L   G L E   +   M++ G  P+    N+L+     R D+ R  
Sbjct: 689 LVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAG 748

Query: 455 ---KKLWDQMFASGCSGNLKTYNILISKFS----------------------------EV 483
               KL ++ F+   S    T ++LIS FS                            + 
Sbjct: 749 AYLSKLDERNFSVEAS----TTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKA 804

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
             I+ A  LF  ML KG+ PD  TY ++L GL Q      A E++   +N    +     
Sbjct: 805 RRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTY 864

Query: 544 STFMISLCRRGHFLVATKLLRGLSS 568
           +  +  LC+      A K+ + L S
Sbjct: 865 NIILNGLCKSNCVDEAFKMFQSLCS 889



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 189/474 (39%), Gaps = 51/474 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            SY+++L     + +I++  S  +++  N IT     Y  I+  L Q     K FS   E
Sbjct: 554 FSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQ----TKRFSEAKE 609

Query: 145 VKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +  N  + G +      N +L  L     +D A+KMF  +  +G++ + I F + I    
Sbjct: 610 LYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMI---- 665

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
                G +L                            KG R E+A  +   +       +
Sbjct: 666 -----GALL----------------------------KGGRKEDAMDLFAAIPANGLVQN 692

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + YR+V E     GS+ E + +     K G AP +      +  L+    I  A     
Sbjct: 693 VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
            +    F+++    + LI   SS + +        + +K R+   +  S L K   K  +
Sbjct: 753 KLDERNFSVEASTTSMLISIFSSDEYQHHA---KSLPKKYRILNEANSSALIK---KARR 806

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D+   +++ +       D+ +YN ++  L  +GR  EA  +   M       ++  YN 
Sbjct: 807 IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++   C+ + +  A K++  + + G   N+ T+NI+I    + G  E A+ LF  +   G
Sbjct: 867 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           + PD  TY  + E L +E +L+    +F         L   +L+  +  L +RG
Sbjct: 927 LVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRG 980



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILIS-------KFSEVGEIEGALRLFHNMLEK---G 500
           L  A KL+D++       ++  +N L++       + S   E E  + LF+ M+      
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           VAP+  TY+ L+   C+  +L+  F  F   +     +   +++  +  LC       A 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 561 KLLRGLSSDLG---HSDSHVILLKSLADAREVEMAIE 594
            +L     +LG    + S+ ILLK L + +  E A+E
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALE 186


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 7/408 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A +   G   +A+++FDEM+ R V  + I +   I    +   L     + D++  
Sbjct: 67  NVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVC 126

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + +   ++   +++ G C+  R+ E   +LDE+  ++  PD   Y I+ +     G  
Sbjct: 127 --HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 184

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                +  K  K GV     DY   IL  GL  + ++  A+E+ + +V+        + N
Sbjct: 185 KAMLSLFGKYLKNGVT--IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 242

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G   + +   A   F  M  +   P   T + L   LCK  +     ++   +  N
Sbjct: 243 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 302

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +E++N ++     +G+L + + V+ EM+  GL P+V  Y S++ A C+   +  A
Sbjct: 303 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D MF      N + YN +I  + E G  + A  L   M   G++P   TY  L++G
Sbjct: 363 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 422

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           LC ++ +  A E+ N   NH ++      +T + + C RG+   A  L
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 470



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 194/461 (42%), Gaps = 14/461 (3%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNF-----------THSPLSYHSILKSLSLSRQ 99
           +  R + P  +T++++  G       +  F             + ++Y+ +L  L  + +
Sbjct: 89  MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGR 148

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           +    ++L ++   K+  D   Y  +   L +  +++   S+F +   N   IG   C+ 
Sbjct: 149 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 208

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L  DG +  A ++   + + G+  + + +   I  +C+  +L    S   +++ R 
Sbjct: 209 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +    +    +I+G CK +R+  A  +L E++     P    +  + + +   G + +
Sbjct: 269 --IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 326

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             +VL + ++ G+ P    Y   +       +I EA  + + +       +  V NA+I 
Sbjct: 327 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 386

Query: 340 SVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +     P   A +    M   G  P++ T + L K LC +++  E  E+   LS +    
Sbjct: 387 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 446

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SYN ++S  C  G + +A  + Q M + G+   V  Y+ L+        L   + L+
Sbjct: 447 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 506

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M  +    +   +NI++  +S+ G    A  L   ML+K
Sbjct: 507 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 547



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/445 (20%), Positives = 179/445 (40%), Gaps = 7/445 (1%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
            Y  +I   I+G + +  F + +++   C  + P     N LL+ L   G +     + D
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMV--CHGLKPNAITYNVLLSGLCRAGRMGETSALLD 157

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           EM+ + +      + +       N     +LS+  +  K  N +  G     ++++G CK
Sbjct: 158 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCK 215

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             +V  A +VL  L      P  + Y  +   +   G +        + +   + P    
Sbjct: 216 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 275

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   I GL    RI  A++L   +         +  N LI +           +  + M 
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E G  P + +  ++    CK  K  E V +   +   D   + + YN ++      G   
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+ ++++MK  G+ P +  YN L++  C +  +  A+++ + +       +  +YN LI
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           S     G I+ AL L   M + G+     TY  L+ GL     L     ++ K + ++V+
Sbjct: 456 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 515

Query: 538 LARSILSTFMISLCRRGHFLVATKL 562
            + +I +  + +  + G+ + A  L
Sbjct: 516 PSNAIHNIMVEAYSKYGNEIKAEDL 540



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYNV+++ +  +GR  +A  V  EM  + + P+   YN++++   +   L    +L DQM
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 124

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N  TYN+L+S     G +     L   M  + + PD  TY+ L +GL +  + 
Sbjct: 125 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 184

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +A   +F K + + V +     S  +  LC+ G   +A ++L+ L
Sbjct: 185 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 229



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 4/154 (2%)

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG-NLKTYN 474
           +R A+G++      G  PD   +N  ++AC     L  A  +  +M   G    N  +YN
Sbjct: 11  VRRAFGILAS---AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 67

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ++I+     G    A+ +F  M E+ V P+  TY ++++G  +  +L+A F + ++ V H
Sbjct: 68  VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 127

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            +       +  +  LCR G     + LL  ++S
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS 161


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/540 (21%), Positives = 244/540 (45%), Gaps = 21/540 (3%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R+WT  L+ ++  L        +LV  V++    + H  AL FF W  +   F H   ++
Sbjct: 102 REWTTRLQNSIRSL--VPQFDHNLVYNVLHAAKKSEH--ALNFFRWVERAGLFQHDRETH 157

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
             I++ L  + ++N    +L  +    +  D  ++  +I S  +    Q+A  +F ++K 
Sbjct: 158 FKIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKE 217

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
              +   +  ++L   +   G    A + F+ M + G+E     + V +W F  + +L  
Sbjct: 218 LGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLET 277

Query: 208 VLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
                ++++ R    I+  V+    +I+G+C+ K +EEA +   E++ +   P  I+Y  
Sbjct: 278 AKRFYEDMKSRG---ISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTT 334

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + +  +    +   + ++ +  G  P    Y   + GL    ++ EA+++   +V+  
Sbjct: 335 MIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRH 394

Query: 327 FTIDDD--VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDE 383
           F   D+   +  L       D  +A+     MI +  +PT       L +N CK    D+
Sbjct: 395 FAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMI-RLSIPTEAGHYGILIENCCKAGMYDQ 453

Query: 384 LVEVYKVLSANDYF------TDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            V++ + L   +         +ME  +YN+++ +LC  G+  +A    +++ +KG+  +V
Sbjct: 454 AVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV 513

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           +F N+L+    +E     A ++   M   G S + ++Y +LI  +   GE   A     +
Sbjct: 514 AF-NNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDS 572

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+E G +PD+  + S++E L  +  +Q A  V N  ++  +     +++  + +L  RGH
Sbjct: 573 MIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGH 632



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 28/304 (9%)

Query: 330 DDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D+D+   LI S       + A+  F  M E G   ++ +   L K + +R +        
Sbjct: 188 DEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGR-------- 239

Query: 389 KVLSANDYFTDM---------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             + A  YF  M          +YNVM+     S RL  A    ++MK +G+ PDV  YN
Sbjct: 240 -YMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYN 298

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   CR  ++  A++ + +M     +  + +Y  +I  +  V   + ALRLF  M   
Sbjct: 299 TMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAA 358

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-HDVMLARSILSTFMISLCRRGHFLV 558
           G  P+  TY++LL GLC    L  A ++  + V  H      SI    +   C+ G    
Sbjct: 359 GEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDA 418

Query: 559 ATKLLRGL-----SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAE 613
           A  +L+ +      ++ GH   + IL+++   A   + A++ ++ + E    +  + + E
Sbjct: 419 AMHVLKAMIRLSIPTEAGH---YGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLE 475

Query: 614 LFAS 617
           + AS
Sbjct: 476 MEAS 479


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/446 (21%), Positives = 189/446 (42%), Gaps = 42/446 (9%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN+LL  L     I    ++  EM  R +  S + FG+ +   C+  ++ + L + D +R
Sbjct: 284 CNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLR 343

Query: 217 KRENSMINGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEF 271
            +  S   G     V+   +I G CK  + E+   +L+E+++    +P+ + Y  + + F
Sbjct: 344 GKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G+      + ++  + GV P        + GL    R+                   
Sbjct: 404 FKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRV------------------- 444

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                            A+ FFN M  KG     +T + L    C  N  +  ++ ++ +
Sbjct: 445 ---------------HRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEM 489

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            ++    D   Y  ++S LC +GR+ +A  V+ ++K  G   D S YN L+   C++  L
Sbjct: 490 LSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKL 549

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
               +L  +M  +G   +  TYN LIS   + G+   A ++   M+++G+ P   TY ++
Sbjct: 550 ERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAI 609

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSD- 569
           +   C + N+    ++F +  +   +   +++   +I +LCR      A  L+  +    
Sbjct: 610 IHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKR 669

Query: 570 -LGHSDSHVILLKSLADAREVEMAIE 594
              ++ ++  +LK + D + +  A E
Sbjct: 670 VRPNTTTYNAILKGVRDKKMLHKAFE 695



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 162/373 (43%), Gaps = 5/373 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-NCEDIGPEICNSLLAVLASDGYIDNALKM 176
           D  ++  +I  L +    +   S+  E+K  N         N L+      G  D A ++
Sbjct: 356 DVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHEL 415

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F +M+  GV+ + I     +   C++ ++ + +   +E++ +   +   +     +I  F
Sbjct: 416 FRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGK--GLKGNAATYTALISAF 473

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C    +  A +  +E+    C PD + Y  +     + G + +  VV+ K +  G +   
Sbjct: 474 CGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDR 533

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNF 355
           + Y   I G   ++++    EL   +       D    N LI  +    D  +A      
Sbjct: 534 SCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEK 593

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSG 414
           MI++G  P++ T   +    C +   DE ++++ ++ S +    +   YN+++  LC + 
Sbjct: 594 MIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNN 653

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            +  A  ++++MK K + P+ + YN++++    + +L  A +L D+M    C  +  T  
Sbjct: 654 DVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITME 713

Query: 475 ILISKFSEVGEIE 487
           +L    S VGEIE
Sbjct: 714 VLTEWLSAVGEIE 726



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 118/286 (41%), Gaps = 25/286 (8%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            GE++ SG+   D +V    +G V+ +             E+G  P    L+ L   LC 
Sbjct: 215 FGELVRSGRSFPDGEV----VGLVAKLG------------ERGVFPDGFKLTQLVGKLCG 258

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             K+    EV   +       D  S N ++++L     ++    ++ EM+++ + P V  
Sbjct: 259 DQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVT 318

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSG------NLKTYNILISKFSEVGEIEGALR 491
           +  L+   C+   +  A +++D++   G S       ++  +N LI    +VG+ E  L 
Sbjct: 319 FGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLS 378

Query: 492 LFHNMLEKGV-APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           L   M    +  P+  TY  L++G  +  N   A E+F +     V      L+T +  L
Sbjct: 379 LLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGL 438

Query: 551 CRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
           C+ G    A +    +      G++ ++  L+ +      +  A++
Sbjct: 439 CKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQ 484


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 228/534 (42%), Gaps = 49/534 (9%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F  ASQ  ++     +++S++++ + S     +  V  ++K  +       +  +  +  
Sbjct: 51  FKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYG 110

Query: 131 QGKNTQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFD--EMSHRGVE 186
           +    +KA  +F  +  +F C        NS+L V+  +G    AL+ ++        + 
Sbjct: 111 KAHLPEKAIELFGRMVDEFQCRRTVRSF-NSVLNVIIQEGLFHRALEFYECGVGGKTNIS 169

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEA 245
            + + F + I   C   KLG V   ++  R+         V     ++ G CK  R++EA
Sbjct: 170 PNVLSFNLVIKAMC---KLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
             +LDE++I  C P  + + ++       G +     ++      G  P    Y   I G
Sbjct: 227 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 286

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPT 364
           L ++ ++ +A  L + +V+ K   +D     LI               N ++++GR V  
Sbjct: 287 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI---------------NGLVKQGRSVDG 331

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           +  LS+L +               +   AN+Y     +Y+ ++S L    +  EA G+ +
Sbjct: 332 VHLLSSLEE---------------RGHHANEY-----AYSTLISGLFKEEKSEEAMGLWK 371

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           +M  KG  P++  Y++L++  CRE  L  AK++  +M   GC+ N  TY+ LI  F + G
Sbjct: 372 KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTG 431

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             + A+R++  M +    P+   Y+ L+ GLC++  L+ A  ++   +   +       S
Sbjct: 432 NSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 491

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV----ILLKSLADAREVEMAIE 594
           + +  LC  G   V  KL   +      S   V    ILL++L     +  AI+
Sbjct: 492 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAID 545



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 174/405 (42%), Gaps = 11/405 (2%)

Query: 151 DIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           +I P +   N ++  +   G +D A+++F EM+ +  E     +   +   C+  ++ + 
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           + +LDE++         SV   ++I+G CK   +    K++D + ++ C P+ + Y  + 
Sbjct: 227 VLLLDEMQIE--GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 284

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
               L G + +   +L +       P    Y   I GL+ + R  +   L   +      
Sbjct: 285 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 344

Query: 329 IDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            ++   + LI G         A+  +  M+EKG  P +   S L   LC+  K DE  E+
Sbjct: 345 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 404

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
              +       +  +Y+ ++     +G  ++A  V +EM +    P+   Y+ L+   C 
Sbjct: 405 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 464

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML--EKGVAPDA 505
           +  LR A  +W  M   G   ++  Y+ +I      G +E  L+LF+ ML  E    PD 
Sbjct: 465 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 524

Query: 506 TTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTF 546
            TY  LL  LC++ ++  A ++ N    +  N D++     L+  
Sbjct: 525 VTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 191/467 (40%), Gaps = 67/467 (14%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
           +  +I ++ +     +A  VF E+    CE      C +L+  L  +  ID A+ + DEM
Sbjct: 175 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYC-TLMDGLCKEDRIDEAVLLLDEM 233

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G   S++ F V I   C+   + +V  ++D +  +    +   V    II+G C   
Sbjct: 234 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK--GCVPNEVTYNTIINGLCLKG 291

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           ++++A  +LD +   +C P+ + Y  +       G   +   +L    + G       Y 
Sbjct: 292 KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 351

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMI 357
             I GL  E +  EA  L + +V      +  V +ALI  +     +D    I+    M+
Sbjct: 352 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCE--MV 409

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            KG  P   T S+L K   K   S + + V+K ++ N+   +   Y+V++  LC  G+LR
Sbjct: 410 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 469

Query: 418 EAYGVIQEMKRKGL-------------------------------------DPDVSFYNS 440
           EA  +   M  +GL                                      PDV  YN 
Sbjct: 470 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 529

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI---------------------LISK 479
           L+ A C+++ +  A  L + M   GC+ +L T NI                     L+ +
Sbjct: 530 LLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVR 589

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +   I GA ++   ML+K + P+A+T+  ++  LC+   +QA  +
Sbjct: 590 LHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIID 636



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     + Y +++  L    +++    +L ++     T ++  Y  +I    +  N+Q
Sbjct: 379 QPNI----VVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQ 434

Query: 137 KAFSVFNEV-KFNCEDIGPEICNS-LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           KA  V+ E+ K NC  +  EIC S L+  L  DG +  A+ M+  M  RG+    + +  
Sbjct: 435 KAIRVWKEMAKNNC--VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 492

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I   C    +   L + +E+  +E+      V   +++   CK   +  A  +L+ +  
Sbjct: 493 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 552

Query: 255 RECKPDFIAYRI 266
           R C PD I   I
Sbjct: 553 RGCNPDLITCNI 564


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/579 (21%), Positives = 242/579 (41%), Gaps = 119/579 (20%)

Query: 15  QAIISASNRTRPAR----KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           Q +IS S R +P+      W        HQ G    + P L  RV++ +  T   +AL  
Sbjct: 356 QDVISKSIREKPSNFSNYYWLS------HQFG-PVIVDPDLFVRVLSSFR-TSPRMALRL 407

Query: 71  FNWASQQPNFTHSPLSYHSILKSLS-----------LSRQINA-----IDSVLKQVKVNK 114
           F WA  QP F  S   + +IL+ L+           + R INA     +D ++     ++
Sbjct: 408 FRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSE 467

Query: 115 IT---LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGY 169
           ++   LD  ++ +   S+++     +  SVF+  K     + P++  CN +L +L     
Sbjct: 468 VSVKILDLLIWVYSKKSMVE-----QCLSVFD--KMIKSRLSPDVKNCNRILRILRDKDL 520

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +  A++++  M   G++ + + +                 ++LD                
Sbjct: 521 MSKAVEVYRTMGEFGIKPTIVTYN----------------TLLD---------------- 548

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                 +CKG +V++   +L E++ R C P+ + Y ++       G   + + ++ +  K
Sbjct: 549 -----SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLK 603

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
            G+      Y   I G   +  + EA  L E                             
Sbjct: 604 TGLKVSAYTYNPLIYGYFNKGLLAEALSLQEE---------------------------- 635

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M+ KG  PT++T ++    LCK  +  + ++    + AN+   D+ SYN ++  
Sbjct: 636 ------MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 689

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G L +A+ +  E++   L P +  YN+L++  CR+  L  A++L  +M   G + +
Sbjct: 690 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD 749

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF---- 525
           + TY IL++   ++G +  A   F  ML +G+  D+  Y + + G  +  +   AF    
Sbjct: 750 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 809

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           E+  K    D+++   ++      LC+ G+   A++LL+
Sbjct: 810 EMLAKGFPPDLIIYNVVVD----GLCKLGNLEEASELLQ 844



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ MI+    P +   + + + L  ++   + VEVY+ +        + +YN ++   C 
Sbjct: 493 FDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCK 552

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G++++   ++ EM+R+G  P+   YN L+    ++     AK L  +M  +G   +  T
Sbjct: 553 GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 612

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN LI  +   G +  AL L   M+ KG +P   TY S + GLC+   +  A +  +  +
Sbjct: 613 YNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDML 672

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++++      +T +   CR G+ + A  L   L S
Sbjct: 673 ANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRS 708


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 191/420 (45%), Gaps = 27/420 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A L   G   +ALK+FDEM   GV  + I +   I    +   L     + D++  
Sbjct: 198 NVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQML- 256

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE------EF 271
             +      V   +++ G C+  R++E   ++DE+      PD   Y I+ +      E 
Sbjct: 257 -HDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGES 315

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTI 329
           + M S+F     LKK   LG       Y   IL  GL  + ++ +AK++ E++V      
Sbjct: 316 QTMLSLFAES--LKKGVMLGA------YTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVP 367

Query: 330 DDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
              + N LI     + D R A   F  M  +   P   T + L   LCK     +  ++ 
Sbjct: 368 TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLV 427

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +  +     +E++N ++    T+G+L + + V+ +M++KG+  DV  + S+++A C+ 
Sbjct: 428 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 487

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A  + D M     + N + YN +I  + E G+ E AL L   M   GV+    TY
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTY 547

Query: 509 TSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             LL+GLC+ + +  A E+     N+ +  DV+   +I+S    + C +G    A +LL+
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS----ACCNKGDTDKALELLQ 603



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/431 (20%), Positives = 185/431 (42%), Gaps = 7/431 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++Y+ +L  L  + +++   +++ ++  + +  D   Y  +   L +   +Q
Sbjct: 261 KPNV----VTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQ 316

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
              S+F E       +G   C+ LL  L  DG +  A ++F+ + H G+  +T+ +   I
Sbjct: 317 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLI 376

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             +C+   L     + ++++ R   +    +    +I+G CK + V +A  ++ E+    
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRH--IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 434

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P    +  + + +   G + +   VL   ++ G+      +   +       +I EA 
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 317 ELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            + + ++      +  V N++I + + S D   A++    M   G   ++ T + L K L
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+ ++ DE  E+   L       D+ SYN ++S  C  G   +A  ++QEM + G+ P +
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
              ++L+ A      +   + L+ QM       +   Y I++  +           L   
Sbjct: 615 RTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKE 674

Query: 496 MLEKGVAPDAT 506
           M EKG+A D T
Sbjct: 675 MSEKGIAFDDT 685



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 190/445 (42%), Gaps = 7/445 (1%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL  L   G   +    F  +   G    T  +   +        L   L+ML  + 
Sbjct: 125 CNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMG 184

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           + E +    +    ++I G  +  +  +A KV DE+      P+ I Y  + +   + G 
Sbjct: 185 RSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG-HVKGG 243

Query: 277 VFEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
             E    L+ +    G  P    Y   + GL    R+ E + L + + S     D    +
Sbjct: 244 DLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYS 303

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L  G   + + ++ +  F   ++KG +    T S L   LCK  K  +  +V+++L   
Sbjct: 304 ILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHT 363

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                   YN +++  C    LR A+ + ++MK + + PD   YN+L+   C+ +++  A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           + L  +M  SG   +++T+N LI  +   G++E    +  +M +KG+  D  ++ S+++ 
Sbjct: 424 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +  A  + +  +  DV     + ++ + +    G    A  L+  + +  G S 
Sbjct: 484 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNS-GVSA 542

Query: 575 SHV---ILLKSLADAREVEMAIEHI 596
           S V   +LLK L  + +++ A E I
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELI 567



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 2/195 (1%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P+LS+ + L ++L    +  ++   + +L A     D  ++N +V     +G L  A  
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 422 VIQEMKR-KGLDPDVSF-YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           +++ M R +G  P  +F YN ++    R      A K++D+M   G + N  TYN +I  
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + G++E   RL   ML  G  P+  TY  LL GLC+   +     + ++  +H ++  
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 540 RSILSTFMISLCRRG 554
               S     L R G
Sbjct: 299 GFTYSILFDGLTRTG 313


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 36/380 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G+   AL +  +M   G + + + +   +  FC   ++ +   ++D +R 
Sbjct: 161 NILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMR- 219

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +    V    +++G CK  R+E+A KV DE+      PD ++Y  +   +  +G  
Sbjct: 220 -EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCS 278

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   V  +  + G+ P    +   I        +C+A  L                   
Sbjct: 279 HEALSVFAEMTRKGIMPDVVTFTSLI------HVMCKAGNL------------------- 313

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                      A+     M E+G      T + L    CK+   D+ +   + +      
Sbjct: 314 ---------ERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQ 364

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
             +  YN +++  C  GR+ EA  +++EM+ KG+ PDV  Y++++ A C+      A +L
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             QM  +G   +  TY+ LI    E   +  A  LF NM+  G+ PD  TYTSL++G C+
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCK 484

Query: 518 ETNLQAAFEVFNKSVNHDVM 537
           E N++ A  + ++ V   V+
Sbjct: 485 EGNVERALSLHDEMVKAGVL 504



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 151/326 (46%), Gaps = 1/326 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++   C     +EA  VL ++R   C P+ + Y  +   F   G V   E ++   R+ 
Sbjct: 162 ILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREG 221

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSA 349
           G+ P    +   + G+    R+ +A+++ + +V      D    N L+G    +     A
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  M  KG +P + T ++L   +CK    +  V + + +       +  ++  ++  
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G L +A   ++EM++  + P V  YN+L+   C    +  A++L  +M A G   +
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TY+ ++S + + G+   A +L   MLE GV PDA TY+SL+  LC+E  L  A  +F 
Sbjct: 402 VVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFK 461

Query: 530 KSVNHDVMLARSILSTFMISLCRRGH 555
             ++  +       ++ +   C+ G+
Sbjct: 462 NMISLGLQPDEVTYTSLIDGHCKEGN 487



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 3/233 (1%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           NA++ ++S     SA  FF+ M+  G  P + T + L + LC R    E + V + +   
Sbjct: 127 NAVLLALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGA 186

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               +  +YN +V+  C +G +  A  ++  M+  GL P++  +NS++   C+   +  A
Sbjct: 187 GCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDA 246

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +K++D+M   G + +  +YN L+  + +VG    AL +F  M  KG+ PD  T+TSL+  
Sbjct: 247 RKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHV 306

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF---LVATKLLR 564
           +C+  NL+ A  +  +     + +     +  +   C++G     L+A + +R
Sbjct: 307 MCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMR 359



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 197/481 (40%), Gaps = 63/481 (13%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++++S++  +  + ++     V  ++    +  D   Y  ++    +   + 
Sbjct: 224 KPNL----VTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSH 279

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A SVF E+    + I P++    SL+ V+   G ++ A+ +  EM  RG++ + I F  
Sbjct: 280 EALSVFAEMTR--KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELR 253
            I  FC+   L   L  + E+R+     I  SV+    +I+G+C   R++EA +++ E+ 
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQ---CRIQPSVVCYNALINGYCMVGRMDEARELVREME 394

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            +  KPD + Y  +   +   G       + ++  + GV P    Y   I  L  E+R+ 
Sbjct: 395 AKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A  L + ++S     D+    +LI G     +   A+   + M++ G +P + T S L 
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 373 KNLCKRNKSDE----LVEVY--KVLSANDYF---------TDMESYNVMVSFLCTSGRLR 417
             L K  ++ E    L ++Y  + + AN  +          +++S   ++   C  G + 
Sbjct: 515 NGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMN 574

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  V Q +  +  + D S Y+ L+   CRE  +  A     QM   G + N  +   LI
Sbjct: 575 EADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLI 634

Query: 478 SKFSEVG-----------------------------------EIEGALRLFHNMLEKGVA 502
               E G                                    ++  L + H M   G+ 
Sbjct: 635 RGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLL 694

Query: 503 P 503
           P
Sbjct: 695 P 695


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 190/414 (45%), Gaps = 12/414 (2%)

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V+ +   +   I   CE  ++   LS+LD++  R        V   +++   CKG+   +
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR--GCAPDVVTYNILLEATCKGRGYRQ 60

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A +++D +R   C P+ + Y ++ +     G V +   +L+     G  P T +Y   + 
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVP 363
           GL    R  +A EL   ++      ++   N +I S+      + AI     M + G   
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T + +   LC++   D  + +   + +     D+ +YN ++  LC++ R  +A  ++
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELM 240

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             M + G  PD   +N+L+   C++ L+  A +++ QM   GC+ N  TY+ +IS  ++ 
Sbjct: 241 DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 300

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            +++ AL LF+ M  KG  PD   Y  L E L  +  ++ A +   K  +  +     + 
Sbjct: 301 TKLDQALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLY 359

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA------DAREV 589
           +  ++ LCR G    A  ++  + S     D  ++VIL++ LA      +ARE+
Sbjct: 360 NAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAREL 413



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 199/475 (41%), Gaps = 47/475 (9%)

Query: 77  QPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QPN +T++PL     + +L    Q+    SVL  +       D   Y  ++ +  +G+  
Sbjct: 4   QPNAYTYNPL-----IHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGY 58

Query: 136 QKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A  + + ++   E   P     N L+  +  +G +D+AL++   +   G + ST+ + 
Sbjct: 59  RQAMELIDLMRA--EGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYN 116

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             +   C   + G    ++ E+  REN   N +   V +I+  C+   +++A ++L+++ 
Sbjct: 117 TVLKGLCSAERWGDADELVTEML-RENCPPNEATFNV-VIYSLCRKGLLQQAIQLLEKMS 174

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
              C  + + Y  +        +V     +L K +  G  P    Y   + GL    R  
Sbjct: 175 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWV 234

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A+EL                                   + M + G +P   T + L  
Sbjct: 235 DAEEL----------------------------------MDNMTQNGCLPDNVTFNTLIG 260

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC++    + +EV+K +       +  +Y+ ++S L  + +L +A  +  EM  KG +P
Sbjct: 261 FLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNP 320

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D   Y  L E    +D +  A +   ++  SG S +   YN ++      G+ E A+ + 
Sbjct: 321 D-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 379

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
             M+  G  PD  TY  L+EGL  E  L  A E+  K  + DV++   I S  ++
Sbjct: 380 AYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALL 434



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 4/251 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A+   + M  +G  P   T + L   +C     D+ +E+ + L ++       +YN +
Sbjct: 59  RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 118

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC++ R  +A  ++ EM R+   P+ + +N ++ + CR+ LL+ A +L ++M   GC
Sbjct: 119 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 178

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + N+ TYN +I+   E   ++GA+ L   M   G  PD  TY +LL+GLC       A E
Sbjct: 179 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG---HSDSHVILLKSL 583
           + +    +  +      +T +  LC++G  + A ++ + +  D G   +S ++  ++  L
Sbjct: 239 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQM-PDKGCTPNSITYSTIISGL 297

Query: 584 ADAREVEMAIE 594
           A A +++ A+E
Sbjct: 298 AKATKLDQALE 308



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 2/194 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  LC  G++R+A  V+ +M  +G  PDV  YN L+EA C+    R A +L D M
Sbjct: 9   TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 68

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A GC+ N  TYN+L+      G+++ AL L  N+   G  P    Y ++L+GLC     
Sbjct: 69  RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERW 128

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
             A E+  + +  +     +  +  + SLCR+G    A +LL  +S     ++  ++  +
Sbjct: 129 GDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAI 188

Query: 580 LKSLADAREVEMAI 593
           +  L + R V+ A+
Sbjct: 189 INGLCEQRNVDGAM 202



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           ++AI+ V KQ+     T +S  Y  II  L +     +A  +FNE+    +   P+    
Sbjct: 269 VDAIE-VFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH--KGFNPDKIYQ 325

Query: 160 LLA-VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           LLA  L  D  I+ A++   ++   G+   T+ +   +   C N K    + ++      
Sbjct: 326 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM--AYMV 383

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
            +  +   +  V++I G      + EA     EL I+ C  D +   ++  E  L+
Sbjct: 384 SSGCMPDDLTYVILIEGLAYEGYLNEA----RELLIKLCSRDVLVNSLIKSEALLL 435


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/499 (21%), Positives = 214/499 (42%), Gaps = 36/499 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++++L        +     +L  +  + I  D   Y  +I        ++ AF +F  +
Sbjct: 220 TFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGM 279

Query: 146 -KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +  CE   P +   N L+ VL  +G +  A ++FDEM+  G++ +TI F V I  + ++
Sbjct: 280 HRSGCE---PTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKS 336

Query: 203 AKLGQVLSMLDEVRKR---------------------------ENSMINGSVIAV---LI 232
            ++ Q  +   E++ R                           ++ M +  + A    ++
Sbjct: 337 GQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDML 396

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +   C   R+++A+++L     +        +  +   +   G   E   + +   KLG+
Sbjct: 397 VCRLCWDHRLDDAWELLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGL 456

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           AP ++ +   I+GL  + R+ EA+ L E +VS  + +       L       +   A+  
Sbjct: 457 APSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYFRDGNAVGALKC 516

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           ++ M   G        S     LC+ +  +E  + +  +++     +  +YN ++S LC 
Sbjct: 517 WDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCK 576

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G + EA  ++Q M++ GL PD+   N L++  CRE  L+    L   M ++G + +  T
Sbjct: 577 AGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVT 636

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN +I+ +    ++  A+   + ML  G  PD  TY   +  LC+   L  A ++ ++ V
Sbjct: 637 YNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELV 696

Query: 533 NHDVMLARSILSTFMISLC 551
             D        +T M  +C
Sbjct: 697 AVDCSPNSVTYNTLMDGIC 715



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 84/162 (51%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R+A   F  M  +G  P+L+T + +    C R        +  ++  +    D+ SYN++
Sbjct: 200 RAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNIL 259

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C  G  R+A+ + + M R G +P V  YN L++  C E  +  A++L+D+M   G 
Sbjct: 260 IKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGI 319

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             N  T+N+LI  +++ G+++ A   +  M  +G+ PD+ T+
Sbjct: 320 QVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTF 361



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/401 (19%), Positives = 162/401 (40%), Gaps = 9/401 (2%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +  A  +F+EM+  G   S   F   +  FC    +     +L  + K   S I   V
Sbjct: 197 GEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGK---SGIAPDV 253

Query: 228 IAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
            +  ++I G C      +AFK+ + +    C+P  + Y I+ +     G + E   +  +
Sbjct: 254 CSYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDE 313

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
             ++G+   T  +   I G     ++ +A      + +     D    N +         
Sbjct: 314 MAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGY 373

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            + +V  + M       +   L  L   LC  ++ D+  E+            +  +N +
Sbjct: 374 AAQLVHDHDMFSSHM--SADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGFNAL 431

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG- 465
           ++     G   EA  + + M + GL P  S +N L+   C +  L  A+ L + M + G 
Sbjct: 432 IAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGY 491

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C     ++ I +  +   G   GAL+ + +M   G+  D   +++ + GLC+   +  A+
Sbjct: 492 CLST--SFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAY 549

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + F +  +  ++      ++ + +LC+ G+   A KL++ +
Sbjct: 550 QAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNM 590



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L + G +D A  + + M  +G   ST  F + +  +  +      L   D++  
Sbjct: 464 NYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFTICLDAYFRDGNAVGALKCWDDM-- 520

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             N  +    IA    I+G C+   V EA++   E+  R   P+ I Y  +       G+
Sbjct: 521 -GNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGN 579

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           + E   +++  R+ G+ P        I GL  E ++     L   + S   T D    N 
Sbjct: 580 MTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNT 639

Query: 337 LIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           +I +   + D  SA+ F N M+  G  P + T +    +LC+ +  ++  ++   L A D
Sbjct: 640 IINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVD 699

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
              +  +YN ++  +C S  L  A  +   + +    P+    N  +   C++
Sbjct: 700 CSPNSVTYNTLMDGIC-SDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCKQ 751



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 111/255 (43%), Gaps = 8/255 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A      M + G  P + + + L K  C    S +  ++++ +  +     + +YN++
Sbjct: 235 RVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNIL 294

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           V  LC  GR+ EA  +  EM + G+  +   +N L++   +   +  A   + +M A G 
Sbjct: 295 VDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGL 354

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  T+NI+ ++  + G     L   H+M    ++ D      L+  LC +  L  A+E
Sbjct: 355 VPDSCTFNIIAARAHKFG-YAAQLVHDHDMFSSHMSADGLDM--LVCRLCWDHRLDDAWE 411

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLK 581
           +   ++   V L  +  +  + +  + G    A++L R     GL+      +  ++ L 
Sbjct: 412 LLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLC 471

Query: 582 SLADAREVEMAIEHI 596
           +     E ++ +EH+
Sbjct: 472 NQGRLDEAQLLLEHM 486



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%)

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G   EA  V+  ++R G  P +S  ++L+    R   +R A  ++++M A G   +L 
Sbjct: 160 AAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGPRPSLA 219

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           T+N ++  F   G +  A  L   M + G+APD  +Y  L++G C     + AF++F
Sbjct: 220 TFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMF 276


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 38/351 (10%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK    ++A K+LDE+R + C PD + Y +V       G V +    LK     G  P T
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 297 NDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
             Y   + GL    R  +A+EL GE                                   
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGE----------------------------------- 87

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M +KG  P + T + L   LC++   +  +EV + +       +  SYN ++   C   +
Sbjct: 88  MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 147

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +A   +  M  +G  PD+  YN+L+ A CR   +  A +L  Q+   GC+  L +YN 
Sbjct: 148 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 207

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I   ++ G+ + AL L + M+ KG+ PD  TY+++  GLC+E  ++ A   F K  +  
Sbjct: 208 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 267

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
           +     + +  ++ LC+R     A  L   +  +  + +  ++ IL++ LA
Sbjct: 268 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 318



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 162/376 (43%), Gaps = 37/376 (9%)

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           A     GY   A+K+ DEM  +G     + + V +   C+  ++   +  L  +      
Sbjct: 1   ATCKRSGY-KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSY--G 57

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
               +V   +++ G C  +R E+A +++ E+  + C P+ + + ++       G V    
Sbjct: 58  CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL 117

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            VL++  K G  P +  Y   +         C+ K++ +                     
Sbjct: 118 EVLEQIPKYGCTPNSLSYNPLL------HAFCKQKKMDK--------------------- 150

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  A+ F + M+ +G  P + + + L   LC+  + D  VE+   L        + 
Sbjct: 151 -------AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 203

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYN ++  L  +G+ +EA  ++ EM  KGL PD+  Y+++    CRED +  A + + ++
Sbjct: 204 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 263

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N   YN +I    +  E   A+ LF  M+  G  P+ +TYT L+EGL  E  +
Sbjct: 264 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 323

Query: 522 QAAFEVFNKSVNHDVM 537
           + A ++ ++  +  V+
Sbjct: 324 KEARDLLDELCSRGVV 339



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 6/198 (3%)

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C+    + A KL D+M   GC+ ++ TYN++++   + G ++ A+    N+   G  P
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  +Y  +L+GLC     + A E+  +             +  +  LCR+G    A ++L
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 564 RGLS--SDLGHSDSHVILLKSLADAREVEMAIEHIKWI--QESSPTMLQEISAELFASLS 619
             +       +S S+  LL +    ++++ A+  +  +  +   P ++   +  L  +L 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT--LLTALC 178

Query: 620 SSSYPEPILLLLHALQEK 637
            S   +  + LLH L++K
Sbjct: 179 RSGEVDVAVELLHQLKDK 196



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 110/277 (39%), Gaps = 16/277 (5%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP-- 84
           A +W    E+ + ++G +    P++V   +    L    L         Q P +  +P  
Sbjct: 75  AERWEDA-EELMGEMG-QKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 132

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           LSY+ +L +    ++++   + L  +       D   Y  ++ +L +      A  + ++
Sbjct: 133 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 192

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K   +   P +   N+++  L   G    AL++ +EM  +G++   I +       C  
Sbjct: 193 LKD--KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 250

Query: 203 AKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            ++   +    +V+    R N+++  +     II G CK +    A  +   +    C P
Sbjct: 251 DRIEDAIRAFGKVQDMGIRPNTVLYNA-----IILGLCKRRETHSAIDLFAYMIGNGCMP 305

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           +   Y I+ E     G + E   +L +    GV  ++
Sbjct: 306 NESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKS 342


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 134/562 (23%), Positives = 239/562 (42%), Gaps = 68/562 (12%)

Query: 11  TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           T+ SQA+    N T P   W+  L+ +L +L    SLS + V + +   L+   + AL F
Sbjct: 63  TKRSQAMARLIN-TEP---WSHELQSSLAELA--PSLSKTTVLQTLQ--LIRTPAKALHF 114

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---ITLDSSVYRFIIP 127
           F W   +  FTH+  SY  +++ L  SR +NA  + +  ++      + L    +  +I 
Sbjct: 115 FRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIR 173

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEM-SH 182
           S       Q++  VF  +K    +IG  P +   NSLL+++   G    A ++FDEM   
Sbjct: 174 SYGWAGLFQESIKVFKTMK----EIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDT 229

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKR 241
            GV   T  F + I  FC N+ + +      E+ + +    +  V+    ++ G C+  +
Sbjct: 230 YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFK---CDPDVVTYNTLVDGLCRAGK 286

Query: 242 VEEAFKVLDEL--RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           V+ A  V+  +  +     P+ + Y  +   + +   + E   +L +    G+ P    Y
Sbjct: 287 VKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITY 346

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
              I GL      CEA++L ++          ++L  ++G                  + 
Sbjct: 347 NTLIQGL------CEAQKLDKI---------KEILEGMVG------------------DG 373

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P   TL+ L K  C   K +E   V++ +S      D  +Y+V+V  LC  G  R A
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 420 YGVIQEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
                E+  K       G  P V+ YN + E  C     + A++++ Q+   G + +  +
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPS 492

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y  LI      G  E    L   ML +   PDA TY  +++GL ++ +   A +   K +
Sbjct: 493 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 533 NHDVMLARSILSTFMISLCRRG 554
               +   +I  + + +L  +G
Sbjct: 553 KSSHLPTTAIFHSILAALVEKG 574



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNS 440
            E ++V+K +        + ++N ++S +   GR   A  +  EM    G+ PD   +N 
Sbjct: 182 QESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNI 241

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK- 499
           L+   C   ++      + +M    C  ++ TYN L+      G+++ A  +   M++K 
Sbjct: 242 LIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKS 301

Query: 500 -GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
             ++P+  TYT+L+ G C + ++  A  +  + V+  +   +   +T +  LC       
Sbjct: 302 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 361

Query: 559 ATKLLRGLSSDLG 571
             ++L G+  D G
Sbjct: 362 IKEILEGMVGDGG 374



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 5/209 (2%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P+LS  + L      R  +  L   ++ + A  +  + +SY +M+  L  S  L  A  
Sbjct: 90  APSLSKTTVLQTLQLIRTPAKAL-HFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARN 148

Query: 422 VIQEMKRK---GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
            +  +++K    +     F+NSL+ +     L + + K++  M   G S ++ T+N L+S
Sbjct: 149 FVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLS 208

Query: 479 KFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
              + G    A +LF  ML+  GV PD  T+  L+ G C  + +   F  F +       
Sbjct: 209 IVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCD 268

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGL 566
                 +T +  LCR G   +A  +++G+
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGM 297



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 85/438 (19%), Positives = 167/438 (38%), Gaps = 83/438 (18%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-----KVNKITLDSSVYRFIIPSLI 130
           + PN + + ++Y ++++   + + +    S+L ++     K NKIT     Y  +I  L 
Sbjct: 300 KSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKIT-----YNTLIQGLC 354

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           + +   K   +   +  +   I P+ C  N+L+    + G ++ A  +F++MS   V+  
Sbjct: 355 EAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
           +  + V +   C+     +     DE+ ++E           +++H              
Sbjct: 414 SATYSVLVRSLCQRGDFRRAEEFFDELAEKE-----------ILLHDV------------ 450

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
                   CKP   AY  + E     G   + E V ++  K G     + Y+  ILG   
Sbjct: 451 -------GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS-YKTLILGHCR 502

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           E       +L  +++   F  D +    +I G +   DP  A      M++   +PT + 
Sbjct: 503 EGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAI 562

Query: 368 LSNLSKNLCKR---NKSDELVEV--------------------YK------------VLS 392
             ++   L ++   ++S  LV++                    YK            +L 
Sbjct: 563 FHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLY 622

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            N Y   ME    +VSFLC S +L EA  ++     K    D+   ++++   C+   + 
Sbjct: 623 ENGYLVKMEE---LVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVS 679

Query: 453 PAKKLWDQMFASGCSGNL 470
            A  L+ ++   G    L
Sbjct: 680 EAFALYYELVEKGMQHRL 697


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 203/484 (41%), Gaps = 48/484 (9%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  I+   S +    A D    + K    TL++S+Y  II +  Q  N ++A ++ 
Sbjct: 376 SLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 435

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIW 197
            E++    D    I ++++     DGY         L +F  +   G   + + +G  I 
Sbjct: 436 REMEEEGIDAPIAIYHTMM-----DGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLIN 490

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + +  K+ + L  +  V K E    N    + ++I+GF K K    AF V +++     
Sbjct: 491 LYTKVGKISKALE-VSRVMKEEGVKHNLKTYS-MMINGFVKLKDWANAFAVFEDMVKEGM 548

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--------------------------- 290
           KPD I Y  +   F  MG++      +K+ +KL                           
Sbjct: 549 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 608

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSV 341
                   G  P  + +   I GL+ +R++ +A E L E+ ++G    +      + G  
Sbjct: 609 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 668

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S  D   A  +F  +  +G    + T   L K  CK  +    + V K +SA +   +  
Sbjct: 669 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 728

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN+++      G + EA  +IQ+MK++G+ PD+  Y S + AC +   +  A +  ++M
Sbjct: 729 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEM 788

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A G   N+KTY  LI  ++     E AL  +  M   G+ PD   Y  LL  L    ++
Sbjct: 789 EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASI 848

Query: 522 QAAF 525
             A+
Sbjct: 849 AEAY 852



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 172/423 (40%), Gaps = 3/423 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I  SL+   A    +D AL    +M   G+E S + + V +  F +           DE 
Sbjct: 344 IYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEA 403

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            KR +  +N S+    II+  C+   +E A  ++ E+           Y  + + + ++ 
Sbjct: 404 -KRIHKTLNASIYGK-IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVA 461

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  VV K+ ++ G  P    Y   I       +I +A E+  V+       +    +
Sbjct: 462 DEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYS 521

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I G V   D  +A   F  M+++G  P +   +N+    C     D  ++  K +   
Sbjct: 522 MMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 581

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R +  V   M+R G  P V  +N L+     +  +  A
Sbjct: 582 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKA 641

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ VG+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 642 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 701

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 702 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 761

Query: 575 SHV 577
            H 
Sbjct: 762 IHT 764



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/317 (18%), Positives = 123/317 (38%), Gaps = 14/317 (4%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H   KS  + R +   D + +   V  +      +  +I  L++ +  +KA  + +E+  
Sbjct: 595 HGYAKSGDMRRSLEVFDMMRRCGCVPTV----HTFNGLINGLVEKRQMEKAVEILDEMTL 650

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                       ++   AS G    A + F  + + G++     +   +   C++ ++  
Sbjct: 651 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 710

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            L++  E+  R  ++   S +  ++I G+ +   V EA  ++ +++    KPD   Y   
Sbjct: 711 ALAVTKEMSAR--NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSF 768

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAKELGEVIV 323
                  G +      +++   LGV P    Y   I G     + E+ +   +E+  + +
Sbjct: 769 ISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGI 828

Query: 324 SGKFTIDDDVLNALIGSVSSIDP---RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                +   +L +L+   S  +       +     M+E G +  + T  + SK LCK   
Sbjct: 829 KPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWSKCLCKIEA 888

Query: 381 S-DELVEVYKVLSANDY 396
           S  EL E  +     D+
Sbjct: 889 SGGELTETLQKTFPPDW 905



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 68/175 (38%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  M  +G  PT    ++L          DE +   + +        + +Y+V+V     
Sbjct: 330 FERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 389

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G    A     E KR     + S Y  ++ A C+   +  A+ L  +M   G    +  
Sbjct: 390 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAI 449

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           Y+ ++  ++ V + +  L +F  + E G  P   TY  L+    +   +  A EV
Sbjct: 450 YHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEV 504


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 195/463 (42%), Gaps = 56/463 (12%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--------ITLDSSVYRFIIPSLIQ 131
           F+ + +SY  ++  L  + ++N   ++L+ ++  K        +  +  +Y  +I  L +
Sbjct: 138 FSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCR 197

Query: 132 GKNTQKAFSVFNEVKFNCEDIGPEIC------NSLLAVLASDGYIDNALKMFDEMSHRGV 185
                + F  +NE+      +G  +C       SL+  L   G       + DEM  RG+
Sbjct: 198 NGFVDEGFEFYNEM------MGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGL 251

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245
           + S   F V I   C+N  L +   M DE+  R        V    ++ G+C    V+ A
Sbjct: 252 DVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYE--PNIVTCTALMGGYCLKGNVDMA 309

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            ++ D +     K D   Y +    +  +G V +   V  +  + GV P    Y   I  
Sbjct: 310 RELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDC 369

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L      C+A E     VSG + I                          M   G  P +
Sbjct: 370 L------CKAGE-----VSGAWEI-----------------------VKTMHRSGLTPDI 395

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T   L   LCK  + D+ + ++  L  +    D+ SY +++   CTS R+ EA  ++++
Sbjct: 396 VTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRD 455

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  K L P +  Y+ L++  CR   +  A +L ++M   G   +  TY+IL+    +   
Sbjct: 456 MHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQH 515

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ A+ LF+ M+++G+ PD   YT +++G C+   +  A  +F
Sbjct: 516 LDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLF 558



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 184/437 (42%), Gaps = 42/437 (9%)

Query: 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +FS+F ++      +     N++L  L  +G +  AL+  DE+ + G   + + +G+ I 
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMING------SVIAVLIIHGFCKGKRVEEAFKVLDE 251
             CEN ++ + +++L  + K +    +G       V+  ++I   C+   V+E F+  +E
Sbjct: 151 GLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 252 LRIRECKPDFIAYRIVA----------EEFKLMGSVFEREV------------------V 283
           +      P+   Y  +           E F L+  +  R +                  +
Sbjct: 211 MMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGM 270

Query: 284 LKKKRKL-------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           L + R++       G  P        + G  ++  +  A+EL + I    F  D    N 
Sbjct: 271 LVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNV 330

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            I     +   R A+  F+ M  +G VP + T ++L   LCK  +     E+ K +  + 
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ +  +++  LC S RL +A  +  ++   GL PDV  Y  L+  CC    +  A 
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAM 450

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L   M       ++ TY+ LI      G I  A RL + M  KG  PD  TY+ LL+ L
Sbjct: 451 NLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDAL 510

Query: 516 CQETNLQAAFEVFNKSV 532
            ++ +L  A  +FN+ +
Sbjct: 511 WKKQHLDEAVFLFNQMI 527



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 23/340 (6%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +  K  K G    T      + GL V   + +A E  + IV+  F++++     LI  + 
Sbjct: 94  IFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLC 153

Query: 343 SIDPRSAIVFFNFMIE------------KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                +  V    MIE            KG V   S + +    LC+    DE  E Y  
Sbjct: 154 ENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDC---LCRNGFVDEGFEFYNE 210

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +  N    +  +Y  ++  LC  G+  E +G++ EM R+GLD  V  +  L++  C+  +
Sbjct: 211 MMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGM 270

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A++++D+M   G   N+ T   L+  +   G ++ A  LF  + E G   D  TY  
Sbjct: 271 LVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNV 330

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF-----LVATKLLRG 565
            + G C+   ++ A  VF++     V+      ++ +  LC+ G       +V T    G
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390

Query: 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
           L+ D+    +  ILL  L  ++ ++ AI     + ES  T
Sbjct: 391 LTPDI---VTCCILLDGLCKSKRLDQAILLFNQLVESGLT 427


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/496 (21%), Positives = 209/496 (42%), Gaps = 37/496 (7%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           Q    + S ++ + +L+    S  I+  ++V  ++ V  +  DSS ++ ++    +    
Sbjct: 197 QNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKI 256

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           Q+A    + +           C  +L+ L  +G ++ A+  F +M   G + + I F   
Sbjct: 257 QEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSL 316

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RI 254
           I   C+   + Q   ML+E+ +  N           +I G CK    E+AF++  +L R 
Sbjct: 317 IDGLCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 374

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              KP+   Y  +   +     +   E++  + ++ G+ P  N Y   I G       C+
Sbjct: 375 DIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH------CK 428

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           A         G F                     A    N M ++G  P + T + +  +
Sbjct: 429 A---------GNFD-------------------RAYELMNLMDDEGFRPNIYTYNAVIDS 460

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK++++ E  E+     +     D  +Y +++   C    +++A      M + G + D
Sbjct: 461 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEAD 520

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +   N L+ A CR+  ++ +++L+  + + G     +TY  +IS + + G+ + AL+ FH
Sbjct: 521 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFH 580

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           NM   G  PD+ TY SL+ GLC+++ +  A +++   ++  +        T     C+R 
Sbjct: 581 NMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRN 640

Query: 555 HFLVATKLLRGLSSDL 570
               A  +L  L   L
Sbjct: 641 DSASAMIVLEPLDKKL 656


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 207/481 (43%), Gaps = 46/481 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVF 142
            SY  +LKSL   R+    D +L+ + +   + L ++V Y  +I    +  +  KA  +F
Sbjct: 180 FSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLF 239

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           NE+      I P++   N ++  L     +D A  +  +M  +GV      +   I+ + 
Sbjct: 240 NEMVQ--RGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGY- 296

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
             +  GQ    +   +K  +  I   V+ +  ++   CK  ++++A  V D + ++  K 
Sbjct: 297 --SSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKT 354

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D  +Y+I+   +   G + +   +       G+AP                         
Sbjct: 355 DIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAP------------------------- 389

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
                     D  + N LI + +       A + FN M E+G  P + T S +   LC+ 
Sbjct: 390 ----------DSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRI 439

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K D+ VE +  +        + +Y+ ++   CT G L +A  ++ +M  KG+ PD+  +
Sbjct: 440 GKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCF 499

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N ++   C+   +  A+ ++D   + G   N+  YN L+  +  VG++E ALR+F  M+ 
Sbjct: 500 NFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVS 559

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
            G+ P+   Y +L+ G C+   +     +F + ++  +  + ++ +  +  L + G  + 
Sbjct: 560 AGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVP 619

Query: 559 A 559
           A
Sbjct: 620 A 620



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 183/397 (46%), Gaps = 12/397 (3%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           L  F ++   G+   TI     +   CE  +  + L +L   R      +       +++
Sbjct: 128 LAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLH-RMPHLGCVPDVFSYCIVL 186

Query: 234 HGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
              C  ++  +A ++L  +      C P+ +AY  V + F   G V +   +  +  + G
Sbjct: 187 KSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRG 246

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAI 350
           ++P  + Y   +  L   R + +A+ +   +V      D+   N+LI   SS    + A+
Sbjct: 247 ISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAV 306

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M  +G +P + TL++L  +LCK  K  +  +V+  ++     TD+ SY +M++  
Sbjct: 307 RVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGY 366

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
            T G L +   +   M   G+ PD   +N L++A  +  +L  A  ++++M   G   ++
Sbjct: 367 ATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDV 426

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA----FE 526
            TY+ +I+    +G+++ A+  F+ M+++GVAP  +TY  L++G C   +L  A     +
Sbjct: 427 VTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQ 486

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + NK +  D+     I++    +LC+ G  + A  + 
Sbjct: 487 MMNKGMRPDIGCFNFIIN----NLCKLGRVMDAQNIF 519



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/543 (20%), Positives = 237/543 (43%), Gaps = 14/543 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF--SVFN 143
           +Y+ ++ +L  +R ++  +++L+Q+    +  D+  Y     SLI G ++   +  +V  
Sbjct: 253 TYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYN----SLIYGYSSTGQWKEAVRV 308

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             K   + I P++   NSL+A L   G I +A  +FD M+ +G +     + + +  +  
Sbjct: 309 SKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYAT 368

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              L  +  + + +    + +   S I  ++I  + K   ++ A  + +E+R +  +PD 
Sbjct: 369 KGCLVDLTELFNLML--SDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDV 426

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  V      +G + +      +    GVAP  + Y   I G      + +AK+L   
Sbjct: 427 VTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQ 486

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +++     D    N +I ++  +     A   F+F I  G  P +   + L    C   K
Sbjct: 487 MMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGK 546

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +  + V+ V+ +     ++  Y  +V+  C  GR+ E   + +E+  KG+ P  + YN 
Sbjct: 547 MENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNI 606

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++    +     PAK  + +M  SG + +  TY+I++    +    + A+ LF  +    
Sbjct: 607 ILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMN 666

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V  D TT   ++ G+ Q   ++ A ++F       ++ +    S  M +L + G    A 
Sbjct: 667 VKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEAD 726

Query: 561 KLLRGL-SSDLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617
            +   + ++     +S ++  +++ L + RE+  A  ++  I E S ++    +  L   
Sbjct: 727 DMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDL 786

Query: 618 LSS 620
            SS
Sbjct: 787 FSS 789



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 161/351 (45%), Gaps = 13/351 (3%)

Query: 232 IIHGFCKGKRVEEAFKVL-DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++ G C+ KR  EA  +L   +    C PD  +Y IV +         + + +L+   + 
Sbjct: 149 LLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEG 208

Query: 291 GVA--PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS---SID 345
           G    P    Y   I G   E  + +A +L   +V    + D    N ++ ++    ++D
Sbjct: 209 GAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMD 268

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
              AI+    M++KG +P   T ++L        +  E V V K +++     D+ + N 
Sbjct: 269 KAEAIL--RQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNS 326

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++ LC  G++++A  V   M  KG   D+  Y  ++     +  L    +L++ M + G
Sbjct: 327 LMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDG 386

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            + +   +N+LI  +++ G ++ A  +F+ M E+GV PD  TY++++  LC+   +  A 
Sbjct: 387 IAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAV 446

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLG 571
           E FN+ ++  V  + S     +   C  G  L A  L+     +G+  D+G
Sbjct: 447 EKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIG 497



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/503 (21%), Positives = 197/503 (39%), Gaps = 41/503 (8%)

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +   M H G       + + +   C + K GQ   +L  + +     +  +V    +I G
Sbjct: 166 LLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDG 225

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           F K   V +A  + +E+  R   PD   Y  V        ++ + E +L++    GV P 
Sbjct: 226 FFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPD 285

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
              Y   I G     +  EA  + + + S     D   LN+L+ S+      + A   F+
Sbjct: 286 NWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFD 345

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M  KG+   + +   +      +    +L E++ ++ ++    D   +NV++      G
Sbjct: 346 SMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCG 405

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
            L  A  +  EM+ +G++PDV  Y++++ A CR   +  A + ++QM   G + ++ TY+
Sbjct: 406 MLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYH 465

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPD------------------------------ 504
            LI  F   G++  A  L   M+ KG+ PD                              
Sbjct: 466 FLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISI 525

Query: 505 -----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
                   Y +L++G C    ++ A  VF+  V+  +     +  T +   C+ G     
Sbjct: 526 GLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEG 585

Query: 560 TKLLRG-LSSDLGHSDS-HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617
             L R  L   +  S + + I+L  L  A     A      + ES   M +   + +   
Sbjct: 586 LSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGG 645

Query: 618 LSSSSYPEPILLL---LHALQEK 637
           L  +S  +  +LL   LHA+  K
Sbjct: 646 LFKNSCSDEAILLFKELHAMNVK 668



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 48/283 (16%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY----------------- 388
           P+  + FF  +++ G       +SNL + LC+  ++ E +++                  
Sbjct: 124 PKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYC 183

Query: 389 ----------KVLSANDYFTDME-----------SYNVMVSFLCTSGRLREAYGVIQEMK 427
                     K   A++    M            +YN ++      G + +A  +  EM 
Sbjct: 184 IVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMV 243

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           ++G+ PD+S YN ++ A C+   +  A+ +  QM   G   +  TYN LI  +S  G+ +
Sbjct: 244 QRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWK 303

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
            A+R+   M  +G+ PD  T  SL+  LC+   ++ A +VF+    K    D+   + +L
Sbjct: 304 EAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIML 363

Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLA 584
           + +      +G  +  T+L   + SD    DSH+  +L+K+ A
Sbjct: 364 NGY----ATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYA 402


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 134/562 (23%), Positives = 239/562 (42%), Gaps = 68/562 (12%)

Query: 11  TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           T+ SQA+    N T P   W+  L+ +L +L    SLS + V + +   L+   + AL F
Sbjct: 63  TKRSQAMARLIN-TEP---WSHELQSSLAELA--PSLSKTTVLQTLQ--LIRTPAKALHF 114

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---ITLDSSVYRFIIP 127
           F W   +  FTH+  SY  +++ L  SR +NA  + +  ++      + L    +  +I 
Sbjct: 115 FRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIR 173

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEM-SH 182
           S       Q++  VF  +K    +IG  P +   NSLL+++   G    A ++FDEM   
Sbjct: 174 SYGWAGLFQESIKVFKTMK----EIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDT 229

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKR 241
            GV   T  F + I  FC N+ + +      E+ + +    +  V+    ++ G C+  +
Sbjct: 230 YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFK---CDPDVVTYNTLVDGLCRAGK 286

Query: 242 VEEAFKVLDEL--RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           V+ A  V+  +  +     P+ + Y  +   + +   + E   +L +    G+ P    Y
Sbjct: 287 VKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITY 346

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
              I GL      CEA++L ++          ++L  ++G                  + 
Sbjct: 347 NTLIQGL------CEAQKLDKI---------KEILEGMVG------------------DG 373

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +P   TL+ L K  C   K +E   V++ +S      D  +Y+V+V  LC  G  R A
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 420 YGVIQEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
                E+  K       G  P V+ YN + E  C     + A++++ Q+   G + +  +
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPS 492

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y  LI      G  E    L   ML +   PDA TY  +++GL ++ +   A +   K +
Sbjct: 493 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 533 NHDVMLARSILSTFMISLCRRG 554
               +   +I  + + +L  +G
Sbjct: 553 KSSHLPTTAIFHSILAALVEKG 574



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 4/209 (1%)

Query: 352 FFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F+ M++  G  P   T + L +  C  +  DE    +K +S      D+ +YN +V  L
Sbjct: 222 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 281

Query: 411 CTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           C +G+++ A+ V++ M +K   L P+V  Y +L+   C +  +  A  L  +M + G   
Sbjct: 282 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 341

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNML-EKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           N  TYN LI    E  +++    +   M+ + G  PD  T  +L++  C    L+ AF V
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 401

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHF 556
           F K     V    +  S  + SLC+RG F
Sbjct: 402 FEKMSELRVQPDSATYSVLVRSLCQRGDF 430



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNS 440
            E ++V+K +        + ++N ++S +   GR   A  +  EM    G+ PD   +N 
Sbjct: 182 QESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNI 241

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK- 499
           L+   C   ++      + +M    C  ++ TYN L+      G+++ A  +   M++K 
Sbjct: 242 LIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKS 301

Query: 500 -GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558
             ++P+  TYT+L+ G C + ++  A  +  + V+  +   +   +T +  LC       
Sbjct: 302 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 361

Query: 559 ATKLLRGLSSDLG 571
             ++L G+  D G
Sbjct: 362 IKEILEGMVGDGG 374



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/402 (18%), Positives = 161/402 (40%), Gaps = 49/402 (12%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-----KVNKITLDSSVYRFIIPSLI 130
           + PN + + ++Y ++++   + + +    S+L ++     K NKIT     Y  +I  L 
Sbjct: 300 KSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKIT-----YNTLIQGLC 354

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           + +   K   +   +  +   I P+ C  N+L+    + G ++ A  +F++MS   V+  
Sbjct: 355 EAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
           +  + V +   C+     +     DE+ ++E           +++H              
Sbjct: 414 SATYSVLVRSLCQRGDFRRAEEFFDELAEKE-----------ILLHDV------------ 450

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
                   CKP   AY  + E     G   + E V ++  K G     + Y+  ILG   
Sbjct: 451 -------GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS-YKTLILGHCR 502

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           E       +L  +++   F  D +    +I G +   DP  A      M++   +PT + 
Sbjct: 503 EGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAI 562

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME----SYNVMVSFLCTSGRLREAYGVI 423
             ++   L ++  + E   + K++       +++    +   +VSFLC S +L EA  ++
Sbjct: 563 FHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKML 622

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
                K    D+   ++++   C+   +  A  L+ ++   G
Sbjct: 623 LFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 664


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 185/412 (44%), Gaps = 7/412 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +A     +  + + ++M   G+      + +FI  FC  ++L   L++L ++ K
Sbjct: 87  NKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMK 146

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              E  ++  S     +++G+C  KR+ +A  ++D++     KPD   +  +     L  
Sbjct: 147 LGYEPDIVTLSS----LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   ++ +  + G  P    Y   + GL     I  A  L   + + +   +  + N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I S+        A+  F  M  KG  P + T ++L   LC   +  +   +   +   
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ ++N ++      G+L EA  + +EM ++ +DPD   YN L+   C  + L  A
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K+++  M +  C  N++TYN LI+ F +   +E  + LF  M ++G+  +  TYT++++G
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQG 442

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
             Q  +  +A  VF + V++ V       S  +  LC  G    A  + + L
Sbjct: 443 FFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYL 494



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 5/358 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG  P        + G    +RI +A  L + +V   +  D      LI  + 
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+++G  P L T   +   LCKR   D  + +   + A     ++ 
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVV 259

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            +N ++  LC    +  A  +  EM+ KG+ P+V  YNSL+   C       A +L   M
Sbjct: 260 IFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM 319

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T+N LI  F + G++  A +L   M+++ + PD  TY  L+ G C    L
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A ++F   V+ D +      +T +   C+        +L R +S    +G++ ++  +
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439

Query: 580 LKSLADAREVEMAIEHIK-WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
           ++    A + + A    K  +    PT +   S  L   L S    +  L++   LQ+
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSI-LLHGLCSYGKLDTALVIFKYLQK 496



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 196/452 (43%), Gaps = 50/452 (11%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QP+     ++Y +++  L     I+   ++L +++  +I  +  ++  II SL + ++ +
Sbjct: 220 QPDL----VTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVE 275

Query: 137 KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            A  +F E++   + I P +   NSL+  L + G   +A ++   M  + +  + + F  
Sbjct: 276 VAVDLFTEME--TKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            I  F +  KL +   + +E+ +R  S+   ++   L+I+GFC   R++EA ++   +  
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQR--SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS 391

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           ++C P+   Y  +   F     V +   + ++  + G+   T  Y   I G         
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFF------- 444

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSK 373
                                       + D  SA + F  M+   RVPT + T S L  
Sbjct: 445 ---------------------------QAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLH 476

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC   K D  + ++K L  ++   ++  YN M+  +C +G++ EA+ +   +  K   P
Sbjct: 477 GLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---P 533

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  YN+++   C + LL+ A  L+ +M   G   N  TYN LI       +   +  L 
Sbjct: 534 DVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELI 593

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             M   G   DA+T  SL+  +  +  L  +F
Sbjct: 594 KEMRSSGFVGDAST-ISLVTNMLHDGRLDKSF 624



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 203/448 (45%), Gaps = 14/448 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++  S+L     S++I+   +++ Q+       D+  +  +I  L       +A ++ ++
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213

Query: 145 -VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            V+  C+   P++    +++  L   G ID AL + ++M    ++ + + F   I   C 
Sbjct: 214 MVQRGCQ---PDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC- 269

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             K   V   +D   + E   I  +V+    +I+  C   R  +A ++L  +  ++  P+
Sbjct: 270 --KYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPN 327

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + +  + + F   G + E E + ++  +  + P T  Y   I G  +  R+ EAK++ +
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFK 387

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            +VS     +    N LI G          +  F  M ++G V    T + + +   +  
Sbjct: 388 FMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAG 447

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             D    V+K + +N   TD+ +Y++++  LC+ G+L  A  + + +++  ++ ++  YN
Sbjct: 448 DCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYN 507

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++E  C+   +  A   WD   +     ++ TYN +IS       ++ A  LF  M E 
Sbjct: 508 TMIEGMCKAGKVGEA---WDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEV 527
           G  P++ TY +L+    ++ +  A+ E+
Sbjct: 565 GTLPNSGTYNTLIRANLRDCDRAASAEL 592



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 99/215 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M++    P++   + L   + K NK + ++ + + +       D+ +Y++ ++
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   +L  A  V+ +M + G +PD+   +SL+   C    +  A  L DQM   G   
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  T+  LI       +   A+ L   M+++G  PD  TY +++ GLC+  ++  A  + 
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLL 246

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           NK     +     I +T + SLC+  H  VA  L 
Sbjct: 247 NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLF 281



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 27/260 (10%)

Query: 360 GRVPTLSTLSNLSKNLCKRNK------------SDELVEVYKVLSANDYFTDMES----- 402
           G  PT+ +  NL  + C                 + L ++ KV  A D F DM       
Sbjct: 22  GNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFP 81

Query: 403 ----YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
               +N ++S +    +      + ++M+  G+  D+  Y+  +   CR   L  A  + 
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M   G   ++ T + L++ +     I  A+ L   M+E G  PD  T+T+L+ GL   
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
                A  + ++ V            T +  LC+RG   +A  LL  + +      ++V+
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEA--ARIKANVV 259

Query: 579 LLKSLADA----REVEMAIE 594
           +  ++ D+    R VE+A++
Sbjct: 260 IFNTIIDSLCKYRHVEVAVD 279


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 117/540 (21%), Positives = 244/540 (45%), Gaps = 21/540 (3%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R+WT  L+ ++  L        +LV  V++    + H  AL FF W  +   F H   ++
Sbjct: 102 REWTTRLQNSIRSL--VPQFDHNLVYNVLHAAKKSEH--ALNFFRWVERAGLFQHDRETH 157

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
             I++ L  + ++N    +L  +    +  D  ++  +I S  +    Q+A  +F ++K 
Sbjct: 158 FKIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKE 217

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
              +   +  ++L   +   G    A + F+ M + G+E     + V +W F  + +L  
Sbjct: 218 LGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLET 277

Query: 208 VLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
                ++++ R    I+  V+    +I+G+C+ K +EEA +   E++ +   P  I+Y  
Sbjct: 278 AKRFYEDMKSRG---ISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTT 334

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           + + +  +    +   + ++ +  G  P    Y   + GL    ++ EA+++   +V+  
Sbjct: 335 MIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRH 394

Query: 327 FTIDDD--VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDE 383
           F   D+   +  L       D  +A+     MI +  +PT       L +N CK    D+
Sbjct: 395 FAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMI-RLSIPTEAGHYGILIENCCKAGMYDQ 453

Query: 384 LVEVYKVLSANDYF------TDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            V++ + L   +         +ME  +YN+++ +LC  G+  +A    +++ +KG+  +V
Sbjct: 454 AVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV 513

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           +F N+L+    +E     A ++   M   G S + ++Y +LI  +   GE   A     +
Sbjct: 514 AF-NNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDS 572

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+E G +PD+  + S++E L  +  +Q A  V N  ++  +     +++  + +L  RGH
Sbjct: 573 MIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGH 632



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 28/304 (9%)

Query: 330 DDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D+D+   LI S       + A+  F  M E G   ++ +   L K + +R +        
Sbjct: 188 DEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGR-------- 239

Query: 389 KVLSANDYFTDM---------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             + A  YF  M          +YNVM+     S RL  A    ++MK +G+ PDV  YN
Sbjct: 240 -YMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYN 298

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   CR  ++  A++ + +M     +  + +Y  +I  +  V   + ALRLF  M   
Sbjct: 299 TMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAA 358

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN-HDVMLARSILSTFMISLCRRGHFLV 558
           G  P+  TY++LL GLC    L  A ++  + V  H      SI    +   C+ G    
Sbjct: 359 GEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDA 418

Query: 559 ATKLLRGL-----SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAE 613
           A  +L+ +      ++ GH   + IL+++   A   + A++ ++ + E    +  + + E
Sbjct: 419 AMHVLKAMIRLSIPTEAGH---YGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLE 475

Query: 614 LFAS 617
           + AS
Sbjct: 476 MEAS 479


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 185/436 (42%), Gaps = 36/436 (8%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   Y  +I    Q  N ++A  +  ++  +   +   + + LL+ L   G +D AL++ 
Sbjct: 290 DLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLL 349

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM    ++   + + + I   C+  K+ Q + +  E+    N +   S     I+ G C
Sbjct: 350 YEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCF--NRIFPNSFAHSGILKGLC 407

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           +   + +A    D L +   +PD   Y I+ + +  +G V E   + K+ R   + P   
Sbjct: 408 EKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIV 467

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            +   I G    R++ EA+ L E I                                   
Sbjct: 468 TFNSLIYGFCKNRKVVEARRLLESIKL--------------------------------- 494

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G  P+  T + L    C+    ++L E+   ++  D    + +Y V++  LC   +L 
Sbjct: 495 -HGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLE 553

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           E+  ++++M+ KGL PD   YN++++  C+   +R A +L D M          TYN+LI
Sbjct: 554 ESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLI 613

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                 G++E A R+  ++ ++ +      YT++++  C + + Q A +VF++ V     
Sbjct: 614 DGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFE 673

Query: 538 LARSILSTFMISLCRR 553
           ++    S  +  LC+R
Sbjct: 674 VSIKDYSAVINRLCKR 689



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 175/369 (47%), Gaps = 41/369 (11%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF-EREVVLKKKRK 289
           ++IHG      +EEA ++ +++  +  +PD + Y+IVA+ F L+G +   RE++ K    
Sbjct: 225 ILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTD 284

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
            G+ P    Y   I G      I EA  L   ++S  F      LN ++ SV        
Sbjct: 285 EGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQ-----LNVILYSV-------- 331

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                                L  +LCKR + DE +++   + AN+   D+ +Y++++  
Sbjct: 332 ---------------------LLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHG 370

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G++++A  + +EM    + P+   ++ +++  C + +L  A+  +D +  S    +
Sbjct: 371 LCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPD 430

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  YNI+I  + ++G++E A+RL+  + +K + P   T+ SL+ G C+   +  A  +  
Sbjct: 431 VTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLE 490

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVILLKSLAD 585
               H +  +    +T M + C  G+     +LL  L  +L   +    ++ +++K L  
Sbjct: 491 SIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELL--LEMNLKDIEPTVVTYTVVIKGLCK 548

Query: 586 AREVEMAIE 594
            R++E +++
Sbjct: 549 QRKLEESVQ 557



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/458 (20%), Positives = 206/458 (44%), Gaps = 18/458 (3%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD--GYIDNALK 175
           D+  Y  +I  LI   + ++A  + N+++   + + P++    +        G +  A +
Sbjct: 219 DTYSYNILIHGLIVAGSMEEALELTNDME--KQGLQPDMVTYKIVAKGFHLLGLMSGARE 276

Query: 176 MFDEM-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-- 232
           +  +M +  G++   + + V I   C+   + + L      R R + + +G  + V++  
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEAL------RLRRDLLSSGFQLNVILYS 330

Query: 233 --IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
             +   CK  +V+EA ++L E+     +PD + Y I+       G V ++ + L K+   
Sbjct: 331 VLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKV-QQAIQLYKEMCF 389

Query: 291 G-VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
             + P +  +   + GL  +  + +A+   + ++      D  + N +I G V   D   
Sbjct: 390 NRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEE 449

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  +  + +K   P++ T ++L    CK  K  E   + + +  +       +Y  +++
Sbjct: 450 AVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMN 509

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G + + + ++ EM  K ++P V  Y  +++  C++  L  + +L + M A G + 
Sbjct: 510 AYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAP 569

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  TYN +I  F +  ++  A  L  +ML   + P   TY  L++GLC+  +++ A  V 
Sbjct: 570 DQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVL 629

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
               + ++ L +   +T + + C +G    A K+   +
Sbjct: 630 VSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQM 667



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/499 (20%), Positives = 208/499 (41%), Gaps = 24/499 (4%)

Query: 25  RPARKWTPLLEQTLHQLGL----RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQ--- 77
           +P      ++ +  H LGL    R+ +   L    + P L+T+  L  G     + +   
Sbjct: 252 QPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEAL 311

Query: 78  --------PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
                     F  + + Y  +L SL    Q++    +L +++ N +  D   Y  +I  L
Sbjct: 312 RLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGL 371

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            +    Q+A  ++ E+ FN   I P     + +L  L   G + +A   FD +    +  
Sbjct: 372 CKQGKVQQAIQLYKEMCFN--RIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRP 429

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAF 246
               + + I  +    KLG V   +   ++  +  I  S++    +I+GFCK ++V EA 
Sbjct: 430 DVTLYNIMIDGY---VKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEAR 486

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           ++L+ +++   +P  + Y  +   +   G++ +   +L +     + P    Y   I GL
Sbjct: 487 RLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGL 546

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTL 365
             +R++ E+ +L E + +     D    N +I     + D R A    + M+     PT 
Sbjct: 547 CKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTP 606

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
           +T + L   LC+    ++   V   L   +      +Y  M+   C  G  + A  V  +
Sbjct: 607 ATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQ 666

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  KG +  +  Y++++   C+  L+  AK  +  M + G S + + + ++++ F   G 
Sbjct: 667 MVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGH 726

Query: 486 IEGALRLFHNMLEKGVAPD 504
           +     L   M++ G+  D
Sbjct: 727 VHSVFELLAVMIKFGLLHD 745


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 196/453 (43%), Gaps = 7/453 (1%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H+P  + ++ IL S +  +  +   S+  ++++  I  D      +I            F
Sbjct: 55  HTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           SV  ++             +L+  L   G ++ AL   D++  +G++F  + +G  I   
Sbjct: 115 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGV 174

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
           C   K+G     +  VRK +  +   +V +   II   CK + V EA+ +  E+  +   
Sbjct: 175 C---KIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGIS 231

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
            D + Y  +   F +   + E   +L +     + P    Y   +  L  E ++ EAK +
Sbjct: 232 ADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNV 291

Query: 319 GEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
             V++      D    + L+ G     + + A   FN M   G  P + + + L    CK
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCK 351

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               DE + ++K +   +    + +Y+ ++  LC SGR+   + +I EM+ +G+  +V  
Sbjct: 352 NKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVIT 411

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YNSL++  C+   L  A  L+++M   G      T+ IL+    + G ++ A   F ++L
Sbjct: 412 YNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLL 471

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            KG   D   Y  ++ G C++  L+ A  + +K
Sbjct: 472 TKGYHLDVYKYNVMINGHCKQGLLEEALTMLSK 504



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 209/483 (43%), Gaps = 51/483 (10%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFT---------HSP--LSYHSILKSL 94
           SLS  L  + I P L+T + L   F +       F+         + P  +++ +++K L
Sbjct: 80  SLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGL 139

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
            L  Q+N       ++    I  D   Y  +I  + +  +T+ A  +  ++         
Sbjct: 140 CLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNV 199

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           E+ N+++  L     +  A  +F EM+ +G+    + +   I+ FC  +KL + + +L+E
Sbjct: 200 EMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNE 259

Query: 215 VRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEFK 272
           +  +    IN +V    +++   CK  +V+EA  VL  + ++ C KPD I Y  + + + 
Sbjct: 260 MVLKT---INPNVYTYNILVDALCKEGKVKEAKNVL-AVMLKACVKPDVITYSTLMDGYF 315

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
           L+  + + + V      +GV P  + Y   I G       C+ K + E            
Sbjct: 316 LVYELKKAQHVFNAMSLMGVTPDVHSYTILINGF------CKNKMVDE------------ 357

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                           A+  F  M +K  VP + T S+L   LCK  +   + ++   + 
Sbjct: 358 ----------------ALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMR 401

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 ++ +YN ++  LC +G L  A  +  +MK +G+ P    +  L++  C+   L+
Sbjct: 402 DRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLK 461

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A++ +  +   G   ++  YN++I+   + G +E AL +   M E G  P+A T+  ++
Sbjct: 462 DAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIII 521

Query: 513 EGL 515
             L
Sbjct: 522 NAL 524



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 19/373 (5%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+  F K K    A  +   L ++  +PD I   I+   F  MG +     VL K  K G
Sbjct: 65  ILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAI 350
             P T  +   I GL ++ ++ +A    + +++     D      LI  V  I D R AI
Sbjct: 125 YQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAI 184

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                +  +   P +   + +   LCK     E   ++  ++A     D+ +Y  ++   
Sbjct: 185 KLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGF 244

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C + +L+EA G++ EM  K ++P+V  YN L++A C+E  ++ AK +   M  +    ++
Sbjct: 245 CIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDV 304

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TY+ L+  +  V E++ A  +F+ M   GV PD  +YT L+ G C+   +  A  +F +
Sbjct: 305 ITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKE 364

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL-------------GH 572
               +++      S+ +  LC+ G       L+     RG+ +++             GH
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGH 424

Query: 573 SDSHVILLKSLAD 585
            D  + L   + D
Sbjct: 425 LDRAIALFNKMKD 437


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 12/408 (2%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A+ +F EM       S + F  F   F   A+  Q   +LD  ++ E + I  ++  +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRF---FSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ FC+  +   A+ VL ++     +PD   +  + +   L G V E  V++ +  +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G  P    Y   + G+        A +L   +       D    + +I S+     ID 
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID- 245

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +AI  F  M  KG   ++ T ++L + LCK  K ++   + K + + +   ++ ++NV+
Sbjct: 246 -AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L+EA  + +EM  +G+ P++  YN+LM+  C ++ L  A  + D M  + C
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S ++ T+  LI  +  V  ++  +++F N+ ++G+  +A TY+ L++G CQ   ++ A E
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS---DLG 571
           +F + V+H V+         +  LC  G    A ++   L     DLG
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 213/496 (42%), Gaps = 55/496 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           SVL +V       D++ +  +I  L ++GK ++    V   V+  C+   P++   NS++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ---PDVVTYNSIV 200

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             +   G    AL +  +M  R V+     +   I   C +  +   +S+  E+   E  
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETK 257

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I  SV+    ++ G CK  +  +   +L ++  RE  P+ I + ++ + F   G + E 
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             + K+    G++P    Y   + G  ++ R+ EA  + +++V  K +            
Sbjct: 318 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------ 365

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                                 P + T ++L K  C   + D+ ++V++ +S      + 
Sbjct: 366 ----------------------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+++V   C SG+++ A  + QEM   G+ PDV  Y  L++  C    L  A ++++ 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +  S     +  Y  +I    + G++E A  LF ++  KGV P+  TYT ++ GLC++ +
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580
           L  A  +  K             +T + +  R G    + KL+  + S  G S       
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS-CGFS------- 575

Query: 581 KSLADAREVEMAIEHI 596
              ADA  ++M I+ +
Sbjct: 576 ---ADASSIKMVIDML 588



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/440 (19%), Positives = 195/440 (44%), Gaps = 7/440 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +P+ T    ++++++K L L  +++    ++ ++  N    D   Y  I+  + +  +T 
Sbjct: 155 EPDTT----TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A  +  +++           ++++  L  DG ID A+ +F EM  +G++ S + +   +
Sbjct: 211 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  K      +L ++  RE  ++   +   +++  F K  +++EA ++  E+  R 
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSRE--IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P+ I Y  + + + +   + E   +L    +   +P    +   I G  + +R+ +  
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           ++   I       +    + L+ G   S   + A   F  M+  G +P + T   L   L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K ++ +E+++ L  +     +  Y  ++  +C  G++ +A+ +   +  KG+ P+V
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  ++   C++  L  A  L  +M   G + N  TYN LI      G++  + +L   
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           M   G + DA++   +++ L
Sbjct: 569 MKSCGFSADASSIKMVIDML 588



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 110/228 (48%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +  I    AI  F  MI    +P+L   S     + +  + + +++  K L  N    ++
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            + N+M++  C   +   AY V+ ++ + G +PD + +N+L++    E  +  A  L D+
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  +GC  ++ TYN +++     G+   AL L   M E+ V  D  TY+++++ LC++  
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           + AA  +F +     +  +    ++ +  LC+ G +     LL+ + S
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 13/303 (4%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-QQPNFTH--------SP--LSYHSILKSLS 95
           L   +V+R I P ++T + L   F      Q+ N  +        SP  ++Y++++    
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +  +++  +++L  +  NK + D   +  +I      K       VF  +          
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             + L+      G I  A ++F EM   GV    + +G+ +   C+N KL + L + +++
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +K +  +  G V+   II G CKG +VE+A+ +   L  +  KP+ + Y ++       G
Sbjct: 465 QKSKMDL--GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           S+ E  ++L+K  + G AP    Y   I   + +  +  + +L E + S  F+ D   + 
Sbjct: 523 SLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 582

Query: 336 ALI 338
            +I
Sbjct: 583 MVI 585


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 203/484 (41%), Gaps = 48/484 (9%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  I+   S +    A D    + K    TL++S+Y  II +  Q  N ++A ++ 
Sbjct: 378 SLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 437

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIW 197
            E++    D    I ++++     DGY         L +F  +   G   + + +G  I 
Sbjct: 438 REMEEEGIDAPIAIYHTMM-----DGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLIN 492

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + +  K+ + L  +  V K E    N    + ++I+GF K K    AF V +++     
Sbjct: 493 LYTKVGKISKALE-VSRVMKEEGVKHNLKTYS-MMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--------------------------- 290
           KPD I Y  +   F  MG++      +K+ +KL                           
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSV 341
                   G  P  + +   I GL+ +R++ +A E L E+ ++G    +      + G  
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S  D   A  +F  +  +G    + T   L K  CK  +    + V K +SA +   +  
Sbjct: 671 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 730

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN+++      G + EA  +IQ+MK++G+ PD+  Y S + AC +   +  A +  ++M
Sbjct: 731 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEM 790

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A G   N+KTY  LI  ++     E AL  +  M   G+ PD   Y  LL  L    ++
Sbjct: 791 EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASI 850

Query: 522 QAAF 525
             A+
Sbjct: 851 AEAY 854



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 172/423 (40%), Gaps = 3/423 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I  SL+   A    +D AL    +M   G+E S + + V +  F +           DE 
Sbjct: 346 IYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEA 405

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            KR +  +N S+    II+  C+   +E A  ++ E+           Y  + + + ++ 
Sbjct: 406 -KRIHKTLNASIYGK-IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVA 463

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  VV K+ ++ G  P    Y   I       +I +A E+  V+       +    +
Sbjct: 464 DEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYS 523

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I G V   D  +A   F  M+++G  P +   +N+    C     D  ++  K +   
Sbjct: 524 MMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R +  V   M+R G  P V  +N L+     +  +  A
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKA 643

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ VG+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 644 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 703

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 704 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 763

Query: 575 SHV 577
            H 
Sbjct: 764 IHT 766



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/317 (18%), Positives = 123/317 (38%), Gaps = 14/317 (4%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H   KS  + R +   D + +   V  +      +  +I  L++ +  +KA  + +E+  
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTV----HTFNGLINGLVEKRQMEKAVEILDEMTL 652

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                       ++   AS G    A + F  + + G++     +   +   C++ ++  
Sbjct: 653 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 712

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            L++  E+  R  ++   S +  ++I G+ +   V EA  ++ +++    KPD   Y   
Sbjct: 713 ALAVTKEMSAR--NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSF 770

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAKELGEVIV 323
                  G +      +++   LGV P    Y   I G     + E+ +   +E+  + +
Sbjct: 771 ISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGI 830

Query: 324 SGKFTIDDDVLNALIGSVSSIDP---RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                +   +L +L+   S  +       +     M+E G +  + T  + SK LCK   
Sbjct: 831 KPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWSKCLCKIEA 890

Query: 381 S-DELVEVYKVLSANDY 396
           S  EL E  +     D+
Sbjct: 891 SGGELTETLQKTFPPDW 907



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 68/175 (38%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  M  +G  PT    ++L          DE +   + +        + +Y+V+V     
Sbjct: 332 FERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 391

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G    A     E KR     + S Y  ++ A C+   +  A+ L  +M   G    +  
Sbjct: 392 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAI 451

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           Y+ ++  ++ V + +  L +F  + E G  P   TY  L+    +   +  A EV
Sbjct: 452 YHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEV 506


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 216/469 (46%), Gaps = 37/469 (7%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L L +++W  +  + + S      +L SL+ +++ + I S L                  
Sbjct: 83  LCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLD----------------- 125

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA-----LKMFDEM 180
               ++  +  +  S+F+ +   C+++     NS++A +    Y +N+      + F   
Sbjct: 126 --GFVRNGSDHQVHSIFHAISM-CDNV---CVNSIIADMLVLAYANNSRFELGFEAFKRS 179

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKG 239
            + G + S +     +    +  +   V  +  E+ +R+   I  +V    ++I+  CK 
Sbjct: 180 GYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK---IQPNVFTFNVVINALCKT 236

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS---VFEREVVLKKKRKLGVAPRT 296
            ++ +A  V++++++  C P+ ++Y  + + +  +G    +++ + VLK+  +  V+P  
Sbjct: 237 GKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNL 296

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNF 355
             +   I G   +  +  + ++ + ++      +    N+LI  + +    S AI   + 
Sbjct: 297 TTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDK 356

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P L T + L    CK +   E ++++  +           YN+++   C  G+
Sbjct: 357 MVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGK 416

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + + + + +EM+R+G+ PDV  YN L+   CR   +  AKKL+DQ+ + G   +L T++I
Sbjct: 417 IDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTFHI 475

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           L+  +   GE   A  L   M + G+ P   TY  +++G C+E NL+AA
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAA 524



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 193/434 (44%), Gaps = 31/434 (7%)

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSH---RGVEFSTIGFGVFIWKFCENAKLGQ 207
           ++ P++C    + L  +  I  +L++  ++ H       +S I    F+  F  N    Q
Sbjct: 78  ELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIR--SFLDGFVRNGSDHQ 135

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-------ELRIRECKPD 260
           V S+   +   +N  +N S+IA +++  +    R E  F+          +L    CKP 
Sbjct: 136 VHSIFHAISMCDNVCVN-SIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPL 194

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            IA  ++ E         + E V K+  +  + P    +   I  L    ++ +A+++ E
Sbjct: 195 MIA--LLKEN-----RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVME 247

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRS----AIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
            +     + +    N LI     +        A      M+E    P L+T + L     
Sbjct: 248 DMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFW 307

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K +     ++V+K +   D   ++ SYN +++ LC  G++ EA  +  +M   G+ P++ 
Sbjct: 308 KDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLI 367

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN+L+   C+ D+L+ A  ++  +   G     + YN+LI  + ++G+I+    L   M
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI---SLCRR 553
             +G+ PD  TY  L+ GLC+  N++AA ++F++  +  +      L TF I     CR+
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL----PDLVTFHILMEGYCRK 483

Query: 554 GHFLVATKLLRGLS 567
           G    A  LL+ +S
Sbjct: 484 GESRKAAMLLKEMS 497



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 182/428 (42%), Gaps = 62/428 (14%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNT 135
           QPN      +++ ++ +L  + ++N    V++ +KV   + +   Y  +I    + G N 
Sbjct: 220 QPNV----FTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275

Query: 136 Q--KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +  KA +V  E+  N  D+ P +   N L+     D  +  ++K+F EM  + V+ + I 
Sbjct: 276 KMYKADAVLKEMVEN--DVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAF 246
           +   I   C   K+ + +SM D+       M++  V   LI     I+GFCK   ++EA 
Sbjct: 334 YNSLINGLCNGGKISEAISMRDK-------MVSAGVQPNLITYNALINGFCKNDMLKEAL 386

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            +   ++ +   P    Y ++ + +  +G + +   + ++  + G+ P    Y   I GL
Sbjct: 387 DMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL 446

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                I  AK+L                                  F+ +  KG +P L 
Sbjct: 447 CRNGNIEAAKKL----------------------------------FDQLTSKG-LPDLV 471

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T   L +  C++ +S +   + K +S         +YN+++   C  G L+ A  +  +M
Sbjct: 472 TFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQM 531

Query: 427 -KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG- 484
            K + L  +V+ YN L++   ++  L  A  L ++M   G   N  TY I+  +  + G 
Sbjct: 532 EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGF 591

Query: 485 --EIEGAL 490
             +IEG L
Sbjct: 592 VPDIEGHL 599


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 217/498 (43%), Gaps = 18/498 (3%)

Query: 63  HHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           HH  A       S +P+    P  +SY  ++++L   R  +    +L+ ++   +  D  
Sbjct: 92  HHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVV 151

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IGPEIC--NSLLAVLASDGYIDNALKMF 177
            Y  +I  L       KA  +  E+   CE  I P +   +SLL      G  ++  K+F
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEM---CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVF 208

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHG 235
            EMS +G+E   + +   I   C+  K  +   ++D + +R  E +++  +V+    I+ 
Sbjct: 209 VEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVL----INC 264

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVA 293
            CK   V+EA  VL ++  +   PD + Y  + +    +  + E   +L++  + K  V 
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    +   I GL    R+ +A ++  ++      ++    N LIG +  +   R A+  
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            + M   G  P   T S L K  CK  + D   ++   +       ++  Y  ++  +C 
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G +  A  +  EM       DV  Y++++   C+   L+ AK+L   +   G + +  T
Sbjct: 445 QGMMERARNLFNEMDNN-FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y+I+I+ F++ G++E A  +   M   G  PD   + SL++G   +  +    E+  + +
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMI 563

Query: 533 NHDVMLARSILSTFMISL 550
             ++ L   I+ST   SL
Sbjct: 564 TKNIALDSKIISTLSTSL 581



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 197/440 (44%), Gaps = 47/440 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L +D   D A+ +   M   GV    + +G  I   C+ A++ + + ++ E+   E
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC--E 178

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           + +    V+   ++ G+CK  R E+  KV  E+  +  +PD + Y  + +    +G   +
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              V+    + G+ P    Y   I         C  KE                     G
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLI--------NCMCKE---------------------G 269

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK--VLSANDYF 397
           SV     + AI     M EKG  P + T + L K L    + DE + + +  V   N   
Sbjct: 270 SV-----KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ ++N ++  LC  GR+R+A+ V   M+  G   ++  YN L+    R   +R A +L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M + G   +  TY+ILI  F ++ +++ A  L   M ++G+ P+   Y  LL  +C+
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGH 572
           +  ++ A  +FN+ ++++  L     ST +   C+ G    A +LL+     GL+ D   
Sbjct: 445 QGMMERARNLFNE-MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPD--- 500

Query: 573 SDSHVILLKSLADAREVEMA 592
           + ++ I++   A + ++E A
Sbjct: 501 AVTYSIVINMFAKSGDMEAA 520



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK---RKGLDPDVSFYNS 440
           L E   +L A     D  SYN +++ LC  G    A  +++ M         P+   Y  
Sbjct: 61  LGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTV 120

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           LM A C + L   A  L   M ++G   ++ TY  LI    +  E++ A+ L   M E G
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFM-ISLCRRGH 555
           + P+   Y+SLL+G C+    +   +VF     K +  DV++   ++ +   +   ++ H
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 556 FLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            ++   + RGL  ++    ++ +L+  +     V+ AI  +K + E
Sbjct: 241 GVMDMMVRRGLEPNV---VTYNVLINCMCKEGSVKEAIGVLKKMSE 283


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 150/665 (22%), Positives = 255/665 (38%), Gaps = 143/665 (21%)

Query: 34   LEQTLHQLGLRDSLSPS-----------LVARVINPYLLTHHSL------------ALGF 70
            LEQ   Q+  R+  S S           L+ +V  P L+T+++L            ALG 
Sbjct: 436  LEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGL 495

Query: 71   FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
              +  +    +   ++++S+L  L   ++I    +V K+        +   Y  +I  L 
Sbjct: 496  LEFMIES-GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 554

Query: 131  QGKNTQKAFSVFNE-VKFNCED---IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            +     +A  +  + V+  C         + + LL V    G +++A+ +  +M   G  
Sbjct: 555  KMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV----GRMEDAVVVLRQMRDAGCL 610

Query: 187  FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
               + +   I  F +  +L + + +L E+   E       V    + HG C+  R +EA 
Sbjct: 611  PDAVTYNTLIDGFFKRQRLREAVGLLREML--EAGFHPSVVTYTTLCHGLCRSGRFDEAV 668

Query: 247  KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILG 305
            ++LD +  R C P+ I Y  + +     G V E     +K  R   VAP    Y   I G
Sbjct: 669  EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 728

Query: 306  LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
            L    RI EA E                                  F   MI  GR+P +
Sbjct: 729  LCKAGRIDEAYE----------------------------------FLERMIRAGRIPDV 754

Query: 366  STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
             T S L   LC   + D  +E++  ++      D+ +YN M++  C  G    AY +++E
Sbjct: 755  VTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEE 814

Query: 426  MKRKG--------------------LDPDVSFYNSLMEACCRE----------------- 448
            MK  G                    +D  VS+++S+ E C  E                 
Sbjct: 815  MKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSE 874

Query: 449  ---DLLRP----------------------------AKKLWDQMFASGCSGNLKTYNILI 477
               +LLR                             A KL  +M + G S +L+TY I+I
Sbjct: 875  QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMI 934

Query: 478  SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
            S  S+  ++  A   F  ML K + PDA  Y+SL++  C+   +  A+++   S     +
Sbjct: 935  SGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTI 994

Query: 538  LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI-EHI 596
               ++ ST + SLC+      A +++R + S       H+    SLA A   E  + E +
Sbjct: 995  ---TMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHI--WTSLATAYVAEGRVDEAV 1049

Query: 597  KWIQE 601
            K + +
Sbjct: 1050 KLVND 1054



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/546 (20%), Positives = 233/546 (42%), Gaps = 67/546 (12%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            FT   ++Y++++  L  + ++ A   VL+ +  +  +     +   +  L +  N   A
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGA 230

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           +  F+ +            ++L+  L   G +D AL +  + + +   F+   F   +  
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFA---FSSLLHG 287

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C+  +L + + +L  +    N +   S     +++G C+ +RV+EAF++ D ++   C 
Sbjct: 288 LCQAHRLEEAIQLLKAMPCVPNVVCFNS-----LMNGLCQARRVDEAFELFDVMKESGCS 342

Query: 259 PDFIAYRIVAEEFKLMGSVFE--REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            D I Y I+ +    +  + E  R V L ++ + G +P    +   I GL    R+ +A 
Sbjct: 343 ADVITYNILLKGLCKLRRIPEAYRHVELMRRTE-GCSPNVVTFSTLIQGLCNAGRVNQAW 401

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
           E+ E +V+                V  I P      + F++E                LC
Sbjct: 402 EVYERMVA----------------VEGISPNR--FTYAFLLE---------------GLC 428

Query: 377 KRNKSDELVEVYKVLSANDYFTD---------------------MESYNVMVSFLCTSGR 415
           K   S  L + ++ +   ++ +                      + +YN +V+ L  SG 
Sbjct: 429 KAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGM 488

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +R+A G+++ M   GL PDV  +NS+++  C+E  +  A  ++ +    GC  N+ TY+ 
Sbjct: 489 VRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYST 548

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI   S++ +++ AL+L   M+E G   +  TY+++++GL +   ++ A  V  +  +  
Sbjct: 549 LIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG 608

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAI 593
            +      +T +    +R     A  LLR +     H    ++  L   L  +   + A+
Sbjct: 609 CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAV 668

Query: 594 EHIKWI 599
           E + ++
Sbjct: 669 EILDYM 674



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 184/440 (41%), Gaps = 54/440 (12%)

Query: 127 PSLIQGKNTQKAFSVFNEVKFNC---EDIGPEIC-------NSLLAVLASDGYIDNALKM 176
           P+++            NEV   C   E++    C       N+L+  L   G    A  +
Sbjct: 34  PTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSL 93

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
            + M+  G     I FG+ I   C+  ++     ++DE+  R    +    I  +++H  
Sbjct: 94  LERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDR--GFVPDVEIHTVLLHAL 151

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C+  RV+EA+    ++ +    PD + Y  + +     G +    +VL+   +   +P  
Sbjct: 152 CELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTV 211

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
                                         FTI  D L+   G+++      A  FF+ M
Sbjct: 212 F----------------------------TFTIAVDGLSK-AGNLT-----GAYEFFDSM 237

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P   T   L   LCK  K D  +    +L   +    M +++ ++  LC + RL
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDIAL---GLLRDKNSQAGMFAFSSLLHGLCQAHRL 294

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA   IQ +K     P+V  +NSLM   C+   +  A +L+D M  SGCS ++ TYNIL
Sbjct: 295 EEA---IQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNIL 351

Query: 477 ISKFSEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +    ++  I  A R    M   +G +P+  T+++L++GLC    +  A+EV+ + V  +
Sbjct: 352 LKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVE 411

Query: 536 VMLARSILSTFMI-SLCRRG 554
            +        F++  LC+ G
Sbjct: 412 GISPNRFTYAFLLEGLCKAG 431



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 38/373 (10%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I+G CK  RV +AF    +      +P  + Y  V +       V +   +L++    
Sbjct: 6   VLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR 65

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G AP    Y   +                               NAL+G   +   + A 
Sbjct: 66  GCAPNAVTYNTLV-------------------------------NALLGQGRA---KEAF 91

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                M   G  P L T   + K LCK  + +    V   +    +  D+E + V++  L
Sbjct: 92  SLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHAL 151

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  GR+ EA+   Q++   G  PD   YN++++   +   L  A  +   +  S  S  +
Sbjct: 152 CELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTV 211

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+ I +   S+ G + GA   F +M + GV+P+  TY +L++GLC+   L  A  +   
Sbjct: 212 FTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD 271

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVE 590
             +   M A    S+ +  LC+      A +LL+ +   + +      L+  L  AR V+
Sbjct: 272 KNSQAGMFA---FSSLLHGLCQAHRLEEAIQLLKAMPC-VPNVVCFNSLMNGLCQARRVD 327

Query: 591 MAIEHIKWIQESS 603
            A E    ++ES 
Sbjct: 328 EAFELFDVMKESG 340



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           M +YNV+++ LC +GR+ +A+   ++  + G  P V  Y+++++  CR++ +    KL +
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M   GC+ N  TYN L++     G  + A  L   M   G  P+  T+  +++GLC+E 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH-----FLVATKLLRGLSSDLGHSD 574
            ++AAF V ++ V+   +    I +  + +LC  G      F     LL G + D   + 
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD---AV 177

Query: 575 SHVILLKSLADAREVEMAIEHIKWIQE--SSPTML 607
           ++  ++  L  A  +E A   ++ + E  SSPT+ 
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVF 212



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/492 (19%), Positives = 195/492 (39%), Gaps = 95/492 (19%)

Query: 85   LSYHSILKSL-SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
            ++Y +++  L  + R  +A+  VL+Q++      D+  Y  +I    + +  ++A  +  
Sbjct: 579  VTYSTVVDGLLKVGRMEDAV-VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 637

Query: 144  EV---KFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            E+    F+     P +    +L   L   G  D A+++ D M+ RG   + I +   +  
Sbjct: 638  EMLEAGFH-----PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692

Query: 199  FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL----- 252
             C+  ++ + L   +++ + E  ++   VIA   +I G CK  R++EA++ L+ +     
Sbjct: 693  LCKAGRVTEALGYFEKMARDE--VVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGR 750

Query: 253  ------------------RI------------RECKPDFIAYRIVAEEFKLMGSVFEREV 282
                              RI            R CK D  AY  +   + L G       
Sbjct: 751  IPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYA 810

Query: 283  VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV-----LNAL 337
            +L++ +  G+A  T  +   I  L    RI EA       VS   +I +D       N L
Sbjct: 811  LLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEA-------VSYFHSIPEDCRDEISYNTL 863

Query: 338  IGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
            I S V+S     A+     M+  G  P       +   L K    +   ++ + + +  +
Sbjct: 864  ITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH 923

Query: 397  FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---------------------- 434
              D+ +Y +M+S L  + +L  A    +EM RK L PD                      
Sbjct: 924  SPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWK 983

Query: 435  ----------VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
                      ++ Y++++++ C+      A ++  +M +  C   +  +  L + +   G
Sbjct: 984  LLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEG 1043

Query: 485  EIEGALRLFHNM 496
             ++ A++L +++
Sbjct: 1044 RVDEAVKLVNDL 1055



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/392 (18%), Positives = 160/392 (40%), Gaps = 24/392 (6%)

Query: 51   LVARVINPYLLTHHSL------------ALGFFNWASQQPNFTHSPLSYHSILKSLSLSR 98
            + AR   P  +T+ S+            ALG+F   ++        ++Y +++  L  + 
Sbjct: 674  MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 733

Query: 99   QIN-AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF-NEVKFNCE-DIGPE 155
            +I+ A + + + ++  +I  D   +  +I  L           +F    +  C+ DI   
Sbjct: 734  RIDEAYEFLERMIRAGRIP-DVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAY 792

Query: 156  ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
              N+++      G    A  + +EM   G+  +T+  G+ I   C N ++ + +S    +
Sbjct: 793  --NAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850

Query: 216  RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             +     I+ + +    I      +R E+A ++L  +      PD   Y  V +     G
Sbjct: 851  PEDCRDEISYNTL----ITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAG 906

Query: 276  SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            S      +L++ R  G +P    Y   I GL   +++  A +  E ++      D  V +
Sbjct: 907  SPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS 966

Query: 336  ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            +LI +    D       +  +   G  PT++  S +  +LCK   +D+ +EV + + + +
Sbjct: 967  SLIDAFCKADKVDDA--WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKN 1024

Query: 396  YFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
                +  +  + +     GR+ EA  ++ +++
Sbjct: 1025 CEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 127/555 (22%), Positives = 228/555 (41%), Gaps = 43/555 (7%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +L+P  V RV+   L     LA  FF W+  +  F HS  SY  +   L  +R     +S
Sbjct: 105 TLAPIWVPRVLVE-LKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANS 163

Query: 106 VLKQVKVNKITLDS---------------SVYRFIIPSLIQGKNTQKAFSVFNEVK-FNC 149
           VLK++ ++K   D                 V+  +   LI     ++A   F+++K F  
Sbjct: 164 VLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFR- 222

Query: 150 EDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
             + P+   CN LL   A  G  D+  + F +M   G   +   + + I   C+   +  
Sbjct: 223 --VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEA 280

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              + +E++ R   ++  +V    +I GF K  R+++     +E++   C+PD I Y  +
Sbjct: 281 ARGLFEEMKFR--GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-------KELGE 320
              F   G +       ++ +  G+ P    Y   +     E  + +A       + +G 
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           V     +T   D  N  IG++S      A    N M++ G    + T + L   LC   +
Sbjct: 399 VPNEYTYTSLIDA-NCKIGNLSD-----AFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E  E++  +       ++ SYN ++     +  +  A  ++ E+K +G+ PD+  Y +
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
            +   C  + +  AK + ++M   G   N   Y  L+  + + G     L L   M E  
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELD 572

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVA 559
           +     T+  L++GLC+   +  A + FN+  N   + A + + T MI  LC+      A
Sbjct: 573 IEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAA 632

Query: 560 TKLL-----RGLSSD 569
           T L      +GL  D
Sbjct: 633 TTLFEQMVQKGLVPD 647



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/468 (19%), Positives = 185/468 (39%), Gaps = 43/468 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ ++  +     + A   + +++K   +  D+  Y  +I    +          F E
Sbjct: 263 FTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEE 322

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +K  C +      N+L+      G +   L+ + EM   G++ + + +   +  FC+   
Sbjct: 323 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382

Query: 205 LGQVLSMLDEVRK--------RENSMINGS-------------------------VIAVL 231
           + Q +    ++R+           S+I+ +                         V    
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 442

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C  +R++EA ++  ++      P+  +Y  +   F    ++     +L + +  G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502

Query: 292 VAPRTNDYREFILGLIVERRICEAK----ELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           + P    Y  FI GL    +I  AK    E+ E  +     I   +++A      S +P 
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYF---KSGNPT 559

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES--YNV 405
             +   + M E     T+ T   L   LCK     + V+ +  +S ND+     +  +  
Sbjct: 560 EGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS-NDFGLQANAAIFTA 618

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           M+  LC   ++  A  + ++M +KGL PD + Y SLM+   ++  +  A  L D+M   G
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
              +L  Y  L+   S   +++ A      M+ +G+ PD     S+L+
Sbjct: 679 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLK 726


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 204/473 (43%), Gaps = 21/473 (4%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-KVNKITLDSSVYR 123
           +++  F    +  PN T+S    HS  ++L +  +   I+  L  V K    TLD     
Sbjct: 4   TVSTDFLPLFNPHPNRTNS----HSNSRTLPILNETTNINRTLSSVSKPQTHTLD----- 54

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDI-----GPEI--CNSLLAVLASDGYIDNALKM 176
           F    L++  +       FNE  +    +      P++  C  L+  L +   ID A+++
Sbjct: 55  FKDTHLLKSLSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQV 114

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
              + + G     I +   I  FC   ++     +LD ++ +  S     V   ++I   
Sbjct: 115 MHILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFS--PDIVTYNILIGSL 171

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C    ++ A +  ++L    CKP  + Y I+ E   L G + E   +L +  ++ + P  
Sbjct: 172 CSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDM 231

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             Y   I G+  E  +  A ++   I S  +  D    N L+ G ++     +     + 
Sbjct: 232 FTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSD 291

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ +G    + T S L  ++C+  K +E V + K +       D   Y+ +++ LC  GR
Sbjct: 292 MVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGR 351

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A  V+  M   G  PD+  YN+++   C++     A  +++++   GCS N  +YN 
Sbjct: 352 VDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNS 411

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           + S     G    AL +   ML+KGV PD  TY SL+  LC++  +  A E+ 
Sbjct: 412 MFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELL 464



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 147/325 (45%), Gaps = 16/325 (4%)

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV---- 292
           CK     E+   L  L  +  KPD +         KL+  +F  + + K  + + +    
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCT------KLIHGLFTSKTIDKAIQVMHILENH 121

Query: 293 -APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRS 348
             P    Y   I G     RI  A ++ + + +  F+ D    N LIGS+ S   +D  S
Sbjct: 122 GHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLD--S 179

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+ F N ++++   PT+ T + L +    +   DE +++   +   +   DM +YN ++ 
Sbjct: 180 ALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIR 239

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            +C  G +  A+ +I  +  KG  PDV  YN L+     +       +L   M A GC  
Sbjct: 240 GMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEA 299

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY++LIS     G++E  + L  +M +KG+ PD   Y  L+  LC+E  +  A EV 
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVL 359

Query: 529 NKSVNHDVMLARSILSTFMISLCRR 553
           +  ++   +      +T +  LC++
Sbjct: 360 DVMISDGCVPDIVNYNTILACLCKQ 384


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 205/513 (39%), Gaps = 87/513 (16%)

Query: 27  ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL--LTHHSLALGFFNWASQQPNFTHSP 84
           ++ W+  LE +L       SLSPS+        L  +     A  FFNWAS+   F H  
Sbjct: 7   SKPWSTELESSLF------SLSPSISKTTFFQVLRFIASPPKAFEFFNWASRN-GFAHDS 59

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            SY  +L  L  +  +N   + L                F I     G       SV  E
Sbjct: 60  RSYFMMLDILGRNGNLNIARNFL----------------FSIERRSNG-------SVKIE 96

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
            +F         CN+LL    + G  + A+K+F  M   GV  S I F   +    +  +
Sbjct: 97  DRF---------CNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGR 147

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                S+ DE+        +     +L I GFCK   V+E F+   E+    C+PD + Y
Sbjct: 148 TNMAHSVFDEMCGTYGVTPDTYTFNIL-IRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTY 206

Query: 265 RIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
             + +     G V     V+K   K+   ++P    Y   + G       C  +E+ E  
Sbjct: 207 NTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGY------CMKQEIDE-- 258

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                                     A+V F  M+ +G  P   T + L K LC+  K D
Sbjct: 259 --------------------------ALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFD 292

Query: 383 ELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           ++ E+    +    +  D  +YN +++  C +G   EA  + ++MK   + PD + Y+ L
Sbjct: 293 KIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVL 352

Query: 442 MEACCREDLLRPAKKLWDQMF-------ASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +   C+      A++L+D++          GC+  +  YN +     + G+   A R+F 
Sbjct: 353 IRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFR 412

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +++KG   D  +Y +L+ G C+E   +A +++
Sbjct: 413 QLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKL 444



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P   T + L +  CK +  DE    +K +S  +   D+ +YN +V  LC +G++R A
Sbjct: 163 GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIA 222

Query: 420 YGVIQEM--KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           + V++ M  K K L PDV  Y +L+   C +  +  A  ++++M + G   N  TYN LI
Sbjct: 223 HNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLI 282

Query: 478 SKFSEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
               EV + +    +    +  +G  PD  TY +L+   C   N   A ++F K     V
Sbjct: 283 KGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKV 342

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
               +  S  + +LC+RG F  A +L   LS +
Sbjct: 343 QPDSATYSVLIRNLCQRGDFERAEQLFDKLSDE 375



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/387 (17%), Positives = 157/387 (40%), Gaps = 35/387 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++++   + ++I+    V +++    +  +   Y  +I  L + +   K   +   
Sbjct: 241 VTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGG 300

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
                    P+ C  N+L+      G  D ALKMF +M    V+  +  + V I   C+ 
Sbjct: 301 A-VGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQR 359

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIREC 257
               +   + D++   +  + +     ++     I    CK  +  +A +V  +L +++ 
Sbjct: 360 GDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQL-MKKG 418

Query: 258 KPDFIAYRIV----------AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
             D  +Y+ +             +KL+  +  R+ V          P    Y   I G +
Sbjct: 419 TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYV----------PDFETYVLLINGFL 468

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLS 366
            +     A +  E ++   +     V ++++  +   D  R +  F   MI++     ++
Sbjct: 469 QKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNIN 528

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             ++  + L       +  ++ ++L  N Y  DME    ++ F+C +G+L +A  ++   
Sbjct: 529 LSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDMEE---LIGFICQNGKLLDAQKMLSFC 585

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRP 453
             KG + D++  N ++E  C+  + RP
Sbjct: 586 LEKGHNVDINVCNVVIEGLCK--MKRP 610



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 27/353 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLK-QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           ++Y++++K L   ++ + I  +L   V       D+  Y  ++ +     N  +A  +F 
Sbjct: 276 ITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFK 335

Query: 144 EVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF---- 199
           ++K           + L+  L   G  + A ++FD++S   +     G    +  +    
Sbjct: 336 KMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIF 395

Query: 200 ---CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+N K  +   +  ++ K+     +      LII G CK    E  +K+L  +  R+
Sbjct: 396 DFLCKNGKTHKAERVFRQLMKKGTQ--DPPSYKTLII-GHCKEGTFEAGYKLLLFMLRRD 452

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PDF  Y ++   F   G        L++  K    P+T+ +   +  L+      E+ 
Sbjct: 453 YVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESA 512

Query: 317 ELGEVIVSGKF----TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
               +++  K      +    +  L GS   I    A      + + G +  +  L    
Sbjct: 513 SFVVLMIDRKIRQNINLSTHTMRLLFGSGLRI---KAFQIVELLYDNGYMVDMEELIGF- 568

Query: 373 KNLCKRNKSDELVEVYKVLS---ANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
             +C+  K   L++  K+LS      +  D+   NV++  LC   R  EA+G+
Sbjct: 569 --ICQNGK---LLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGL 616


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 129/578 (22%), Positives = 239/578 (41%), Gaps = 63/578 (10%)

Query: 4   RPATDLATRISQAIISASNR-TRPARKWTPLLEQTLHQLG----LRDSLSPSLVARVINP 58
           R   D      QA++SA  R  +P+R+   L+     + G     R +   S+ AR I+P
Sbjct: 269 RKVLDTQPENWQAVVSAFERIKKPSRREFGLMVGYYARRGDMHRARQTFE-SMRARGIDP 327

Query: 59  ----YLLTHHSLALGFFNWAS-------QQPNFTHSPLSYHSILKSLSLSRQINAIDSVL 107
               Y    H+ A+G     +        +     S ++Y  ++   +      A D   
Sbjct: 328 SSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWF 387

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
           K+ K     L++ +Y  II +  Q  N  +A ++  E++    D   +I ++++     D
Sbjct: 388 KKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMM-----D 442

Query: 168 GYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS---MLDEVRKRE 219
           GY      +  L +F  +   G   S I +G  I  + +  K+ + L    M+  V  + 
Sbjct: 443 GYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKH 502

Query: 220 NS-----MING--------SVIAVL-----------------IIHGFCKGKRVEEAFKVL 249
           N      +ING        +  AV                  II  FC    ++ A  ++
Sbjct: 503 NMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMV 562

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            E++   C+P    +  +   F   G +     +    R+ G  P  + +   +LGL+ +
Sbjct: 563 KEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEK 622

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTL 368
           R++ +A E+ + +     + D+     ++   +++ D   A  +F  M  +G    + T 
Sbjct: 623 RKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTY 682

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
             L K  CK  +    + V + ++A     +   YN+++      G + EA  ++Q+M +
Sbjct: 683 EALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQ 742

Query: 429 KGLDPDVSFYNSLMEACCRE-DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           +G+ PD+  Y S + ACC+  D+LR A K  ++M A+G   N+KTY  LI  ++     E
Sbjct: 743 EGVQPDIHTYTSFINACCKAGDMLR-ATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPE 801

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            AL  F  +   G+ PD   Y  L+  L     +  A+
Sbjct: 802 KALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAY 839



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 172/423 (40%), Gaps = 58/423 (13%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG+ +  +     + +     + +R R   +   S +   +IH +  G+ +EEA   + +
Sbjct: 297 FGLMVGYYARRGDMHRARQTFESMRAR--GIDPSSHVYTSLIHAYAVGRDMEEALSCVRK 354

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +     +   + Y IV   F   G+    +   KK ++     R  +   +I G I+   
Sbjct: 355 MNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKE-----RHTNLNAYIYGNII-YA 408

Query: 312 ICEA----------KELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKG 360
            C+A          +E+ E  +        D+ + ++   + I +    ++ F  + E G
Sbjct: 409 YCQACNMDRAEALVREMEEEGIDAPL----DIYHTMMDGYTMIRNEEKCLIVFKRLKECG 464

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P++ T   L     K  K  + +EV K++ +     +M++Y+++++          A+
Sbjct: 465 FAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAF 524

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACC---------------------------------- 446
            V +++ + GL PDV  YN++++A C                                  
Sbjct: 525 AVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGF 584

Query: 447 -REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            R   +R A +++D M  SGC   + T+N L+    E  ++E A+ +   M   GV+PD 
Sbjct: 585 ARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDE 644

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            TYT+++ G     +   AFE F K  N  + L        + + C+ G    A  + R 
Sbjct: 645 HTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTRE 704

Query: 566 LSS 568
           +++
Sbjct: 705 MNA 707



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 105/214 (49%), Gaps = 20/214 (9%)

Query: 393 ANDYFTDMESY---NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           A +  T++ +Y   N++ ++ C +  +  A  +++EM+ +G+D  +  Y+++M+      
Sbjct: 390 AKERHTNLNAYIYGNIIYAY-CQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYT--- 445

Query: 450 LLRPAKK---LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           ++R  +K   ++ ++   G + ++ TY  LI+ ++++G++  AL +   M   G+  +  
Sbjct: 446 MIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMK 505

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLARSILSTFMISLCRRGHFLVATKL 562
           TY+ L+ G  +  +   AF VF   +      DV+L  +I+  F    C  G+   A  +
Sbjct: 506 TYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAF----CGMGNMDRAIHM 561

Query: 563 LRGLSSDLGHSDSHVIL--LKSLADAREVEMAIE 594
           ++ +  +     S   +  +   A A E+  A+E
Sbjct: 562 VKEMQKERCRPTSRTFMPIIHGFARAGEMRRALE 595


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 128/583 (21%), Positives = 232/583 (39%), Gaps = 49/583 (8%)

Query: 24  TRPARKWTPLLEQTLHQLGLRDSLSPS----LVARVINPYLLTHHSLALGFFNWASQQPN 79
           +RP  +  P L+       L  S++PS    L A  ++P        AL FFNW  Q+  
Sbjct: 58  SRPNWQKHPSLKN------LIPSIAPSHISALFALNLDP------QTALAFFNWIGQKHG 105

Query: 80  FTHSPLSYHSILKSL------------------SLSRQINAI------DSVLKQVKVNKI 115
           F H+  S+ S+L  L                  S     NA+       S+ ++V   K 
Sbjct: 106 FKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVLEMLRSMNRRVDAFKF 165

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IGPEI--CNSLLAVLASDGYIDN 172
            L    Y  ++  L +     +  SV+ E+    +D + P I   N+++      G +  
Sbjct: 166 KLTLRCYNMLLMLLSRFLMIDEMKSVYLEM---LDDMVTPNIFTLNTMVNGYCKLGNVVE 222

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A     ++   G+   T  +   I  +C N  +    ++   +  +    +   V    +
Sbjct: 223 AELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNK--GCLRNEVSYTNL 280

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           IHGFC+ +RV+EA K+  ++    C P    Y ++      +G   E   + K+  +   
Sbjct: 281 IHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHC 340

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
            P  + Y   I  L  +    +AK++   ++           NALI G        SA+ 
Sbjct: 341 QPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALE 400

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
             + M      P   T + L    C+     + + +   +       ++ +YN+++   C
Sbjct: 401 ILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQC 460

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G L  AY ++  M   GL PD   Y+  ++  C+  L+  A+ L++ +   G   N  
Sbjct: 461 KEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEV 520

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            Y+ LI  + +VG++     L   ML  G  P++ TY SL++G C+E N + A  + +  
Sbjct: 521 IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIM 580

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
           +  D+  A    +  + +L +   F  A  +   + S   H D
Sbjct: 581 IKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPD 623



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 130/575 (22%), Positives = 227/575 (39%), Gaps = 69/575 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++     +R+++    +  Q+  +        Y  II +L Q     +A ++F E
Sbjct: 275 VSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKE 334

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +              L+  L  D   D+A K+ + M  +G+  S + +   I  +C+   
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGL 394

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
               L +L  + +  N   N      LI+ GFC+GK + +A  +L ++  R+ +P+ + Y
Sbjct: 395 SASALEIL-SLMESNNCSPNARTYNELIL-GFCRGKNIHKAMSLLHKMLERKLQPNVVTY 452

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL------ 318
            I+       G +     +L    + G+ P    Y  FI  L     + EA+ L      
Sbjct: 453 NILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKE 512

Query: 319 -----GEVIVS--------------GKFTIDDDV----------LNALI-GSVSSIDPRS 348
                 EVI S              G+F +D  +           N+LI G     + + 
Sbjct: 513 KGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKE 572

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A +  + MI++   P   T + L  NL K ++ D+  +++  + +     D+  Y   + 
Sbjct: 573 ARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIH 632

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C+ GRL++A  +I +M  KG+ PD   Y   ++A  R   +  A  +  +M   GC  
Sbjct: 633 AYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEP 692

Query: 469 NLKTYNILISKFSEVG-----------------------------EIEGALRLFHNMLEK 499
           +  TY+ LI   S                                + E  L LF  M E 
Sbjct: 693 SYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEH 752

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           G AP+A TY   + GLC+   L+ A  +F+            I ++ +   C+ G +  A
Sbjct: 753 GCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEA 812

Query: 560 TKLLRGL--SSDLGHSDSHVILLKSLADAREVEMA 592
            + L  +  +  L H DS  +LL  L D    E A
Sbjct: 813 IRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKA 847



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 203/492 (41%), Gaps = 29/492 (5%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVF----------NEVKFNCEDIGPEICNSLLAVL 164
           ++LD+  Y  +I    + KN   A ++F          NEV +           +L+   
Sbjct: 235 LSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYT----------NLIHGF 284

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
                +D ALK+F +M       +   + V I+  C+  +  + L+M  E+ ++ +   N
Sbjct: 285 CEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEK-HCQPN 343

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                VLI    C+    ++A K+L+ +  +   P  + Y  + + +   G       +L
Sbjct: 344 VHTYTVLIC-SLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEIL 402

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSS 343
                   +P    Y E ILG    + I +A  L   ++  K   +    N LI G    
Sbjct: 403 SLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKE 462

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D  SA    + M E G VP   T S     LCKR   +E   +++ L       +   Y
Sbjct: 463 GDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIY 522

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++   C  G++ +   ++ +M   G  P+   YNSL++  C+E   + A+ L D M  
Sbjct: 523 STLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIK 582

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
                   TY ILI    +  E + A  +F  ML  G  PD   YT+ +   C    L+ 
Sbjct: 583 RDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKD 642

Query: 524 AFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSDSHVI---L 579
           A EV    +N   ++  ++L T  I +  R G    A  +L+ +  ++G   S+     L
Sbjct: 643 A-EVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRM-HEVGCEPSYYTYSCL 700

Query: 580 LKSLADAREVEM 591
           +K L++A+  E+
Sbjct: 701 IKHLSNAKPKEV 712



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 100/479 (20%), Positives = 186/479 (38%), Gaps = 75/479 (15%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAV 163
           +L  ++ N  + ++  Y  +I    +GKN  KA S+ +  K     + P +   N L+  
Sbjct: 401 ILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLH--KMLERKLQPNVVTYNILIHG 458

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
              +G + +A K+   M+  G+      + VFI   C+   + +  S+ + ++  E  + 
Sbjct: 459 QCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLK--EKGIK 516

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              VI   +I G+CK  +V +   +LD++    C P+ I Y  + + +    +  E  ++
Sbjct: 517 ANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLL 576

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL------------------------- 318
           +    K  + P  + Y   I  L+ +    +A ++                         
Sbjct: 577 VDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCS 636

Query: 319 ------GEVIV---SGKFTIDDDVLNALI----GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
                  EV++   + K  + D +L  L     G   SID   A      M E G  P+ 
Sbjct: 637 HGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSID--GAFGILKRMHEVGCEPSY 694

Query: 366 STLSNLSKNL----------------------------CKRNKSDEL-VEVYKVLSANDY 396
            T S L K+L                            C R    E  ++++  ++ +  
Sbjct: 695 YTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGC 754

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +  +Y   ++ LC  G L  A+ +   MK KG  P+   YNSL+   C+  L   A +
Sbjct: 755 APNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIR 814

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             D M  +    +L +  +L+    + G  E A R+F + L+     D   +  L++GL
Sbjct: 815 WLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGL 873



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 132/365 (36%), Gaps = 81/365 (22%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L  D   D A  MFD+M   G       +  FI  +C + +L     ++ ++  + 
Sbjct: 595 LIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAK- 653

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-------------- 265
             ++  +++  L I  + +   ++ AF +L  +    C+P +  Y               
Sbjct: 654 -GIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEV 712

Query: 266 ------------IVAEEFKLMGSVFEREVVLK---KKRKLGVAPRTNDYREFILGL---- 306
                       + + +F       + E  L    K  + G AP  N Y +FI GL    
Sbjct: 713 SSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVG 772

Query: 307 ---IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRV 362
              +  R     KE G+       + ++D+ N+L+G    +     AI + + MIE   +
Sbjct: 773 CLEVAHRLFDHMKEKGQ-------SPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHL 825

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L +   L   L      ++   V+      +Y     +Y+ MV  +   G L+     
Sbjct: 826 PHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEY-----NYDEMVWKVLIDGLLK----- 875

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
                 KGL    S    +ME                     GC  + KTY++LI  F  
Sbjct: 876 ------KGLSDKCSDLFGIMET-------------------QGCQIHPKTYSMLIEGFDG 910

Query: 483 VGEIE 487
           + EI+
Sbjct: 911 IQEID 915


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 216/506 (42%), Gaps = 32/506 (6%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           S ALGFF  +  +PN +    S++ +L+  +       ++++L+++K   IT + + +  
Sbjct: 14  SDALGFFQSSISEPNVS----SFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGV 69

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD--------------GYI 170
           I+ +L   ++  KA S FN           E C    A+ A D              G  
Sbjct: 70  ILSALCARRDLDKAVSYFNSRT-------EEACRLFEAIEAPDSVTYTAIVDGLFKAGNY 122

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKRENSMINGSVIA 229
           D  L+ +++M     E + + + V +   C+  K+ +   + +E +RK     I   +  
Sbjct: 123 DAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDI---IAY 179

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
             +I G  K  RV+EA K++D +  R   P  +AY  +       G + E    +++ R+
Sbjct: 180 SSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRR 239

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS- 348
             + PR + Y   + G I   ++ EA  + E +       D       I ++ SI  R  
Sbjct: 240 RRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREE 299

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F  M+EKG  P + T   +  N CK         V +++       +   Y +++ 
Sbjct: 300 AEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMD 359

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM--FASGC 466
               S RL EA  + Q + + G+ P    YN+++ A C+   +  A +L  +M       
Sbjct: 360 GFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEEL 419

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TY+++I    +VG  E A  L   M++ GV PD  TYTSL++ L     +  A E
Sbjct: 420 EPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAME 479

Query: 527 VFNKSVNHDVMLARSILSTFMISLCR 552
           +  + +   +        T +  LCR
Sbjct: 480 LLEEMLKAGIFPDDHTYGTLVQILCR 505



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  MI KG  P +   S+L   L K  + DE  ++  ++ A        +Y  +V+ LC 
Sbjct: 164 FEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCK 223

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            GR++EA   IQEM+R+ L P V  Y+ ++        +  A  + ++M    C+ +  +
Sbjct: 224 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTIS 283

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y + I     +G  E A ++F  M+EKG  PD  TY  +++  C+E ++ AA  V     
Sbjct: 284 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 343

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVE 590
              V   R I +  M    +      A +L + +  D  L  + ++  ++ +L   ++++
Sbjct: 344 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMD 403

Query: 591 MAIEHIKWIQ 600
            A+E ++ +Q
Sbjct: 404 EALELLREMQ 413


>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
 gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
 gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 757

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 142/637 (22%), Positives = 277/637 (43%), Gaps = 54/637 (8%)

Query: 28  RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           R WT  L+ ++  L        SLV  V++      H  AL FF W  +     H   ++
Sbjct: 98  RAWTTRLQNSIRDL--VPEWDHSLVYNVLHGAKKLEH--ALQFFRWTERSGLIRHDRDTH 153

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
             ++K L    ++N    +L  +    +  D  ++  +I S  +    Q++  +F ++K 
Sbjct: 154 MKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMK- 212

Query: 148 NCEDIGPEIC----NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
              D+G E      NSL  V+   G    A + F++M   GVE +   + + +W F  + 
Sbjct: 213 ---DLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSL 269

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +L   L   ++++ R  S  + +     +I+GFC+ K+++EA K+  E++  +  P  ++
Sbjct: 270 RLETALRFFEDMKTRGISPDDATFNT--MINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 327

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  + + +  +  V +   + ++ R  G+ P    Y   + GL    ++ EAK + + ++
Sbjct: 328 YTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMM 387

Query: 324 SGKFTIDDD--VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR--- 378
           +      D+   L  L+    + D  +A      M              L +N CK    
Sbjct: 388 AKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAY 447

Query: 379 NKS----DELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           N++    D L+E   +L   D   +ME  +YN ++ +LC +G+  +A  + +++ ++G+ 
Sbjct: 448 NRAIKLLDTLIEKEIILRHQDTL-EMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ 506

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
            D    N+L+    +E     + ++   M   G       Y +LI  +   GE   A   
Sbjct: 507 -DQDALNNLIRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTA 565

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS--ILSTFMISL 550
             +M+E G  PD++ + S++E L ++  +Q A  V    ++ +V +  +  +++  + +L
Sbjct: 566 LDSMVEDGHVPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEAL 625

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610
             RGH   A   +  L+ + GH+     LL  L++  +   A++            L + 
Sbjct: 626 LMRGHVEEALGRIDLLNQN-GHTADLDSLLSVLSEKGKTIAALK------------LLDF 672

Query: 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647
             E   SL  SSY            +K LD+ +GAGK
Sbjct: 673 GLERDLSLEFSSY------------DKVLDALLGAGK 697


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/484 (21%), Positives = 209/484 (43%), Gaps = 58/484 (11%)

Query: 72  NWASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
            W +Q   F  SPL     LK L   ++  +A+D  L+++     T ++  Y  ++  L 
Sbjct: 126 GWTAQAITF--SPL-----LKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLC 178

Query: 131 QGKNTQKAFSVFNEVKFNCEDIG--PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVE 186
               +Q+A  + + +  +    G  P++ +  +++  L  +G +D A  +FDEM  +G+ 
Sbjct: 179 DENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMS 238

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            + I +                                       ++HG+C   + +EA 
Sbjct: 239 PNCITYNC-------------------------------------LLHGYCSSGKPKEAI 261

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            +  ++     +PD + Y  +       G   E   V     K G  P ++ Y   + G 
Sbjct: 262 GIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGY 321

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVP 363
             E  + +  +L +V+V      D  + N LIG+ +    +D   A++ F+ M ++G  P
Sbjct: 322 ATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVD--EAMLAFSKMRQQGLHP 379

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + T   +   LC+  K D+ +  +  L +     +   +  ++  LC   +  +A  + 
Sbjct: 380 NIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELA 439

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            EM  +G+ P+  F+N+L+   C+E ++  AK ++D M       ++ TY  LI  +   
Sbjct: 440 VEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLD 499

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLA 539
           G+++ A +L   M+  GV P+  TY +++ G C+   ++ A  +F    +K VN  +++ 
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIY 559

Query: 540 RSIL 543
            +IL
Sbjct: 560 STIL 563



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 218/513 (42%), Gaps = 15/513 (2%)

Query: 81  THSPLSYHSILKSL---SLSRQ-INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           T +  SY+ +LK L   + S+Q ++ + +++          D   Y  +I  L++     
Sbjct: 164 TPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLD 223

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           KA+ +F+E+            N LL    S G    A+ +F +M   GVE   + +   +
Sbjct: 224 KAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLM 283

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+N +  +   + D + K+ +     S I   ++HG+     + +  ++LD +    
Sbjct: 284 VYLCKNGRSMEARKVFDSMVKKGHK--PDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNG 341

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            +PD   + I+   +   G V E  +   K R+ G+ P    Y   +  L    ++ +A 
Sbjct: 342 TQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAM 401

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              + ++S   T +  V   LI  + + D    A      MI +G  P     + L  +L
Sbjct: 402 SQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           CK         ++ ++   D   D+ +Y  ++   C  G++ EA  +++ M   G+ P+ 
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNE 521

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN+++   C+   +  A  L+ QM + G +  +  Y+ ++    +   I  A  L+  
Sbjct: 522 VTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLW 581

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M++ G+     TY  +L+GLCQ      A  +F+     D  L     +  + +L + G 
Sbjct: 582 MIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGR 641

Query: 556 F-----LVATKLLRGLSSDLGHSDSHVILLKSL 583
                 L A+ L RGL  ++    ++ +++KSL
Sbjct: 642 HDEAKDLFASLLARGLVPNV---VTYWLMMKSL 671



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 11/279 (3%)

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS----GKFTID----DD 332
           ++ L++   LG  P    Y   + GL  E R  +A  L   +++    G    D      
Sbjct: 152 DIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTT 211

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           V+N L+     +D   A   F+ M+++G  P   T + L    C   K  E + +++ + 
Sbjct: 212 VINGLLRE-GQLD--KAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMC 268

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +    D+ +YN ++ +LC +GR  EA  V   M +KG  PD S Y +L+     E  L 
Sbjct: 269 RDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLV 328

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
              +L D M  +G   +   +NILI  +++ G ++ A+  F  M ++G+ P+  TY +++
Sbjct: 329 QMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVM 388

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           + LC+   +  A   F++ ++  +     +  T +  LC
Sbjct: 389 DALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLC 427



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 143/329 (43%), Gaps = 6/329 (1%)

Query: 232 IIHGFCKGKRVEEAFKV-LDELRIRECKPDFIAYRIV----AEEFKLMGSVFEREVVLKK 286
           ++ G C  KR  +A  + L  +    C P+  +Y I+     +E +   ++     ++  
Sbjct: 137 LLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMAD 196

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
             + G  P    Y   I GL+ E ++ +A  L + ++    + +    N L+ G  SS  
Sbjct: 197 DTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGK 256

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P+ AI  F  M   G  P + T + L   LCK  +S E  +V+  +    +  D   Y  
Sbjct: 257 PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++    T G L + + ++  M R G  PD   +N L+ A  +  ++  A   + +M   G
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              N+ TY  ++     VG+++ A+  F  ++ +G+ P+   + +L+ GLC       A 
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAE 436

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           E+  + +   +       +T +  LC+ G
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEG 465



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/473 (19%), Positives = 197/473 (41%), Gaps = 44/473 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++  L    Q++    +  ++    ++ +   Y  ++         ++A  +F +
Sbjct: 207 VSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRK 266

Query: 145 VKFNCED-IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +   C D + P++   N+L+  L  +G    A K+FD M  +G +  +  +G  +  +  
Sbjct: 267 M---CRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              L Q+  +LD V  R  +  +  +  +LI   + K   V+EA     ++R +   P+ 
Sbjct: 324 EGYLVQMHQLLD-VMVRNGTQPDHYIFNILI-GAYAKHGMVDEAMLAFSKMRQQGLHPNI 381

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  V +    +G V +      +    G+ P    +R  I GL    +  +A+EL   
Sbjct: 382 VTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVE 441

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++      +    N L+  +      + A   F+ M+       + T + L    C   K
Sbjct: 442 MIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGK 501

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE  ++ + +  +    +  +YN +++  C +GR+ +A  + ++M  KG++P +  Y++
Sbjct: 502 VDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYST 561

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM---- 496
           ++    +   +  AK+L+  M   G    + TYNI++    +    + ALR+FHN+    
Sbjct: 562 ILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLID 621

Query: 497 -------------------------------LEKGVAPDATTYTSLLEGLCQE 518
                                          L +G+ P+  TY  +++ L ++
Sbjct: 622 FHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQ 674



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 169/395 (42%), Gaps = 42/395 (10%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFD 178
            Y  ++ +L +      A S F+  +   E + P   +  +L+  L +    D A ++  
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFD--RLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAV 440

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFC 237
           EM  RG+  +TI F   +   C+   + +  ++ D + + +   +   VI    +I G+C
Sbjct: 441 EMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVD---VQCDVITYTTLIDGYC 497

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              +V+EA K+L+ + +   KP+ + Y  +   +   G + +   + ++    GV P   
Sbjct: 498 LDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIV 557

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            Y   + GL   RRI  AKEL                                  + +MI
Sbjct: 558 IYSTILHGLFQTRRIAAAKEL----------------------------------YLWMI 583

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G    + T + + + LC+ N +D+ + ++  L   D+     ++N+M+  L   GR  
Sbjct: 584 KCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHD 643

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  +   +  +GL P+V  Y  +M++   + LL     L+  +  +GC+ + +  N L+
Sbjct: 644 EAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALV 703

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            K  + GE+  A      + E   + +A+T  SL+
Sbjct: 704 GKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLV 738


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/453 (20%), Positives = 201/453 (44%), Gaps = 12/453 (2%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +++    L R++     + ++   + +      Y  +I    +    +KA+ +  +++ +
Sbjct: 287 TLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDH 346

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                    N ++  L +D    +A+ +F EM+  G+      + + I   C+  K+ + 
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREA 405

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHG----FCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L++ +++ +       G    ++  H     +C    ++EA K+  E+  +   P+ + Y
Sbjct: 406 LNLWEKMNE------TGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +      +  +   +L + ++ GV+     Y   I GL V  R+CE  E+ +   +
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
             F       N++I G + +    SA   +  M  KG  P + T ++     CK +  D 
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDL 579

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++   +       D+ +YN ++   C  G +  A  V+  M + GL P++S YNS + 
Sbjct: 580 ALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
                 ++  A +L+++M   G   +  TY  LI  FS+ G +  AL+L+  M+ KG  P
Sbjct: 640 GYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           D  T+T+L  GLC+  ++  A ++ ++    D+
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDI 732



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 208/498 (41%), Gaps = 25/498 (5%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  RK   + E+TL     RD L P+ V   +     T   +    +    Q  +    P
Sbjct: 296 REVRKALDIFEETL-----RDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLP 350

Query: 85  LS--YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
            +  ++ ++K L   +      S+ K++  + I  D+  Y  +I  L Q +  ++A +++
Sbjct: 351 STNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREALNLW 409

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
              K N   + P I   +SLL     +G +D A+K++ EM  +G   + + +   +    
Sbjct: 410 E--KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHI 467

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             A   +  ++L E++  +N +         +I+G C   RV E  ++L         P 
Sbjct: 468 NKAAFDKAYALLAEMK--QNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPT 525

Query: 261 FIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-- 315
            + Y  +   F    +MGS F    V ++    G+ P    Y  FI G   +   C+   
Sbjct: 526 AMTYNSIINGFIKAGMMGSAF---AVYQQMCAKGIPPNIVTYTSFIDGY-CKTSCCDLAL 581

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           K L +V   G    D    N+LI G     +   A+     M++ G +P +S  ++    
Sbjct: 582 KMLNDVRCKG-LRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                  +E + +Y+ +       D  +Y  ++      G +  A  +  EM  KG  PD
Sbjct: 641 YKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              + +L    CR   +  A+KL D+M       N+  YN+LI+ +   G+++ A RL  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 495 NMLEKGVAPDATTYTSLL 512
            MLE+ + PD TTY  L+
Sbjct: 761 EMLERKIMPDDTTYDILV 778



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/475 (20%), Positives = 196/475 (41%), Gaps = 55/475 (11%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           LD+ ++  ++ +  +      A  +F+E+  +  +    +C+  +A L      + AL +
Sbjct: 175 LDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLV 234

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
             +M   G       F   +    +  ++ + L + DE+      M    V+A  ++HG+
Sbjct: 235 LRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKM--SVVLATTLMHGY 292

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C  + V +A  + +E       P  + Y ++       G   +   + ++ R  G+ P T
Sbjct: 293 CLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPST 352

Query: 297 NDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           N++   I GL+ ++   +A    KE+ +  +   FT +  +L   +     I  R A+  
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYN--ILIHWLCQRRKI--REALNL 408

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--------------------- 391
           +  M E G  P + T  +L    C     DE V++Y  +                     
Sbjct: 409 WEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 392 -------------------SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
                              S NDY     +YN +++ LC  GR+ E   +++  + +G  
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDY-----TYNTLINGLCVVGRVCEVGEMLKRFETEGFV 523

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P    YNS++    +  ++  A  ++ QM A G   N+ TY   I  + +    + AL++
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +++  KG+ PD   Y SL+ G CQE N+  A +V    +   ++   S+ ++F+
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 183/440 (41%), Gaps = 53/440 (12%)

Query: 167 DGYIDNALKMFDEMSHRGVE----FSTIGF----------------------GVFIWKFC 200
           +G  D+A+++FDEM    +E      ++                        G   W F 
Sbjct: 190 EGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFT 249

Query: 201 ENA---------KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            N+         ++ + L + DE+      M    V+A  ++HG+C  + V +A  + +E
Sbjct: 250 FNSVVDVLVKGGRMEEALHIKDELLATGKKM--SVVLATTLMHGYCLQREVRKALDIFEE 307

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
                  P  + Y ++       G   +   + ++ R  G+ P TN++   I GL+ ++ 
Sbjct: 308 TLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKL 367

Query: 312 ICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
             +A    KE+ +  +   FT   ++L   +     I  R A+  +  M E G  P + T
Sbjct: 368 WKDAVSLFKEMADSGIPDAFTY--NILIHWLCQRRKI--REALNLWEKMNETGVKPYIVT 423

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
             +L    C     DE V++Y  +    +  ++ +Y  ++          +AY ++ EMK
Sbjct: 424 YHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMK 483

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           + G+  +   YN+L+   C    +    ++  +    G      TYN +I+ F + G + 
Sbjct: 484 QNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMG 543

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
            A  ++  M  KG+ P+  TYTS ++G C+ +    A ++ N    K +  D+    S++
Sbjct: 544 SAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLI 603

Query: 544 STFMISLCRRGHFLVATKLL 563
             F    C+ G+   A ++L
Sbjct: 604 FGF----CQEGNMSHALQVL 619



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/532 (20%), Positives = 207/532 (38%), Gaps = 80/532 (15%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICNSLL 161
           +  ++  ++I  D  V    I SL + ++  +A  V  ++    +D G        NS++
Sbjct: 199 LFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKM----QDAGFVPWDFTFNSVV 254

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
            VL   G ++ AL + DE+   G + S +     +  +C   ++ + L + +E  +  + 
Sbjct: 255 DVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR--DG 312

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELR---------------------------- 253
           ++   V   ++I G  +    E+A+++  ++R                            
Sbjct: 313 LVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAV 372

Query: 254 --IRECK----PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
              +E      PD   Y I+         + E   + +K  + GV P    Y   +L   
Sbjct: 373 SLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYC 432

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
           V   + EA +L   +    FT +      L+ G ++      A      M + G      
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L   LC   +  E+ E+ K      +     +YN +++    +G +  A+ V Q+M
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 427 KRK-----------------------------------GLDPDVSFYNSLMEACCREDLL 451
             K                                   GL PD++ YNSL+   C+E  +
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNM 612

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A ++   M   G   N+  YN  I+ +  +  +E ALRL+  M+++G+  D  TYT+L
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL 672

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++G  ++ N+  A +++++ V    +      +     LCR G    A KLL
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLL 724



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           ++A ++ DE+   E +PD     +       +       +VL+K +  G  P    +   
Sbjct: 194 DDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSV 253

Query: 303 ILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           +  L+   R+ EA  +  E++ +GK          + G     + R A+  F   +  G 
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGL 313

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           VPT  T + L +   +    ++  E+ + +  +        +N+++  L      ++A  
Sbjct: 314 VPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           + +EM   G+ PD   YN L+   C+   +R A  LW++M  +G    + TY+ L+  + 
Sbjct: 374 LFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYC 432

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G ++ A++L+  M  KG  P+  TYT+L++G   +     A+ +  +   + V     
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 542 ILSTFMISLCRRGHFLVATKLLR 564
             +T +  LC  G      ++L+
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLK 515



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 134/354 (37%), Gaps = 56/354 (15%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLS 95
           L   +  +   P ++T+ +L  G  N A+           +Q   + +  +Y++++  L 
Sbjct: 443 LYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLC 502

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +  ++  +  +LK+ +       +  Y  II   I+      AF+V+ ++    + I P 
Sbjct: 503 VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM--CAKGIPPN 560

Query: 156 ICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           I      +   DGY      D ALKM +++  +G+      +   I+ FC+   +   L 
Sbjct: 561 IVTYTSFI---DGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQ 617

Query: 211 MLDEVRKRE--------NSMING-------------------------SVIAVLIIHGFC 237
           +L  + K          NS I G                         +     +I GF 
Sbjct: 618 VLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFS 677

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   V  A K+  E+  +   PD I +  +       G + +   +L +  +L + P   
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVL 737

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG--SVSSIDPRSA 349
            Y   I G +   ++ EA  L + ++  K   DD   + L+G  S+ S  P  A
Sbjct: 738 MYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSDSPIDA 791



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%)

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM+ KG   D   ++ +M AC +E +   A +L+D+M AS    + +  ++ I+   ++ 
Sbjct: 167 EMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           +   AL +   M + G  P   T+ S+++ L +   ++ A  + ++ +     ++  + +
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLAT 286

Query: 545 TFMISLC 551
           T M   C
Sbjct: 287 TLMHGYC 293


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 184/414 (44%), Gaps = 8/414 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G + +AL + D M +RG     + + + +   C+     Q + ++D +R 
Sbjct: 156 NPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRV 215

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              +  N  V   +I+ G C+   V+ A ++L+ L    C P+ + Y  V +  +  G  
Sbjct: 216 EGCTPTN--VTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRW 273

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            + E ++ +       P        I  L  E     A  L E +     T +    NA+
Sbjct: 274 EDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAV 333

Query: 338 IGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +  +     +D   A+   + M   G  P + T + L K LC   + ++  ++   +S  
Sbjct: 334 VSGLCEQGHVD--GALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQT 391

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
           D   D+ ++N ++ FLC  G   +A  V ++M  KG  P+   Y+S++E   +   +  +
Sbjct: 392 DCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQS 451

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L ++M + G +  +  Y++L    +E  ++  A+++ H + + G++P A  Y ++L G
Sbjct: 452 LELLNEMGSKGFNPEIN-YHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLG 510

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           LC+      A ++ +  V+   M   S  S  +  L   G+   A +LL  LSS
Sbjct: 511 LCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSS 564



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 156/362 (43%), Gaps = 39/362 (10%)

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G+C+  R++EA +V+D + +    P   AY  +     + G V +  V+L      G AP
Sbjct: 129 GYCRVGRLDEARRVVDGMPVL---PSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAP 185

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y       I+    C+ +                              R A+   +
Sbjct: 186 DVVTYN------ILLEAACKGRGY----------------------------RQAMELID 211

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M  +G  PT  T + +   +C+    D   E+   L +     +  +YN ++  L T+G
Sbjct: 212 LMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAG 271

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R  +   +I EM  +   P  +  + ++ + C+E L + A +L ++M    C+ N+ TYN
Sbjct: 272 RWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYN 331

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            ++S   E G ++GAL L  NM   G  P+  TY  L++GLC     + A ++  K    
Sbjct: 332 AVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQT 391

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
           D +      +T +  LC++G  + A ++ + +       +S ++  +++ LA   ++E +
Sbjct: 392 DCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQS 451

Query: 593 IE 594
           +E
Sbjct: 452 LE 453



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 179/425 (42%), Gaps = 8/425 (1%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S  +Y+ ++ +L +  Q+     +L  +       D   Y  ++ +  +G+  ++A  + 
Sbjct: 151 SAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELI 210

Query: 143 NEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           + ++   E   P     N ++  +  +G +D A ++ + +   G   +T+ +   +    
Sbjct: 211 DLMRV--EGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLR 268

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +   V  ++ E+   EN   + + ++V +I   C+    + A ++L+++   +C  +
Sbjct: 269 TAGRWEDVEELIAEMFS-ENCPPSEATLSV-VISSLCQEGLFQRAIRLLEKMSKHDCTAN 326

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y  V       G V     +L   +  G  P    Y   + GL    R  +A++L  
Sbjct: 327 IVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMA 386

Query: 321 VIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            +       D    N +IG +        A+  F  M EKG  P   T S++ + L K  
Sbjct: 387 KMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTG 446

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++ +E+   + +  +  ++ +Y+++   L    +L EA  ++ +++  G+ P    YN
Sbjct: 447 KMEQSLELLNEMGSKGFNPEI-NYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYN 505

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +++   CR      A  +   M + GC  +  TY+ILI   +  G ++ A  L   +  +
Sbjct: 506 TILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSSR 565

Query: 500 GVAPD 504
            V  D
Sbjct: 566 DVIVD 570


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 159/346 (45%), Gaps = 12/346 (3%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVV 283
           ++IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +
Sbjct: 148 AIIASHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYNILLKSLCNQGKSGQADDL 206

Query: 284 LKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNAL 337
           L+   + G   +P    Y   I G   E  + +A +L + +V      D      V++AL
Sbjct: 207 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHAL 266

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                ++D   A  F   M+ KG +P   T +NL        +  E V V+K +      
Sbjct: 267 C-KARAMDKAEA--FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSIL 323

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ + N ++  LC  G+++EA  V   M  KG +PDV  Y  ++     +  L     L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           +D M   G +  + T+N+LI  ++  G ++ A+ +F+ M + GV P   TY +++  LC+
Sbjct: 384 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
              +  A E FN+ ++  V+  +      +   C  G  L A +L+
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/480 (21%), Positives = 202/480 (42%), Gaps = 17/480 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +      + ++ H +       R   A+D +L +        D   Y  +
Sbjct: 131 LALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNIL 190

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P++   N+++     +G ++ A  +F EM  
Sbjct: 191 LKSLCNQGKSGQ-ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-----VLIIHGFC 237
           RG+    + +   +   C+   + +  + L +       M+N  V+        +I+G+ 
Sbjct: 250 RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ-------MVNKGVLPDNWTYNNLIYGYS 302

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
              + +EA +V  E+R +   PD +A   +       G + E   V       G  P   
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFM 356
            Y   + G   +  + +  +L ++++           N LI + ++      A++ FN M
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
            + G  P + T   +   LC+  K D+ +E +  +       D  +Y+ ++   CT G L
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A  +I E+   G+  D+ F+ S++   C+   +  A+ ++D     G   +   YN+L
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +  +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F + +   +
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 190/440 (43%), Gaps = 17/440 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVF 142
            SY+ +LKSL    +    D +L+ +          V  Y  +I    +  +  KA  +F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+      I P++   +S++  L     +D A     +M ++GV      +   I+ + 
Sbjct: 245 KEMVQ--RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG-FCKGKRVEEAFKVLDELRIRECKP 259
              +  + + +  E+R++    I   V+A+  + G  CK  +++EA  V D + ++   P
Sbjct: 303 STGQWKEAVRVFKEMRRQS---ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEA 315
           D  +Y I+   +   G + +   +       G+AP    +   I       ++++ +   
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 419

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            E+ +  V         V+ AL   +  +D   A+  FN MI++G VP       L +  
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALC-RIGKMD--DAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C      +  E+   +  N    D+  +  +++ LC  GR+ +A  +       GL PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN LM+  C    +  A +++D M ++G   N+  Y  L++ + ++G I+  L LF  
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           ML+KG+ P    Y  +++GL
Sbjct: 597 MLQKGIKPSTILYNIIIDGL 616



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 5/244 (2%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTDMESYN 404
           P  A+ FF  ++  G        S+L K  C+  ++DE +++    +       D+ SYN
Sbjct: 129 PELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 188

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +++  LC  G+  +A  +++ M   G    PDV  YN++++   +E  +  A  L+ +M 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   +L TY+ ++    +   ++ A      M+ KGV PD  TY +L+ G       +
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 308

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILL 580
            A  VF +     ++     L+T M SLC+ G    A  +   ++    + D  S+ I+L
Sbjct: 309 EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368

Query: 581 KSLA 584
              A
Sbjct: 369 NGYA 372



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 160/398 (40%), Gaps = 42/398 (10%)

Query: 136 QKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
            KA  +FNE++ +   + P +    +++A L   G +D+A++ F++M  +GV      + 
Sbjct: 413 DKAMIIFNEMRDH--GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
             I  FC +  L +   ++ E+    N M    V    II+  CK  RV +A  + D   
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMN--NGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 528

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                PD + Y ++ + + L+G + +   V       G+ P    Y   + G     RI 
Sbjct: 529 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 588

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           E   L   ++         + N +I G   +     A V F+ M E G      T S + 
Sbjct: 589 EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVL 648

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           + L K    DE + ++K L A +   D+ + N M++ +  + R+ EA  +   + R GL 
Sbjct: 649 RGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 708

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P                                C+    TY+I+I+   + G +E A  +
Sbjct: 709 P--------------------------------CA---VTYSIMITNLIKEGLVEEAEDM 733

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           F +M   G  PD+     ++  L ++  +  A    +K
Sbjct: 734 FSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSK 771


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 131/567 (23%), Positives = 232/567 (40%), Gaps = 47/567 (8%)

Query: 35  EQTLHQLGLRDSLSPSLVARVINPYLLTHHS---------------LALGFFNWASQQPN 79
           +QT H   +R   SPS+   V NP  LTH                 +AL FFNWA   P 
Sbjct: 81  QQTPH---VRLLQSPSINLSV-NPDSLTHEQAITVVASLASEAGSMVALSFFNWAIGFPK 136

Query: 80  FTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           F +    Y     S + + +  R    +D +++        + + + +F           
Sbjct: 137 FRYFMRFYIVCATSFIGNENFERAHEVMDCMVR--------VFAEIGKF----------- 177

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           Q+A ++  E++ +   +     N +  V    G +  A  +FDEM  RGV   ++ + + 
Sbjct: 178 QEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLM 237

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
              +C   ++      L ++ +R   + N +    L+I  FC+       F   D+    
Sbjct: 238 AIAYCRMGRISDTDRWLKDMVRRGFVVDNAT--CTLMISTFCEKGFASRVFWYFDKWVEL 295

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             KP+ I +  +       GS+ +   +L++  K G  P    +   I GL  +    +A
Sbjct: 296 GLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKA 355

Query: 316 KELG-EVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSK 373
             L  +++ S  +  +     ++I      D    A +  + M E+G VP   T + L  
Sbjct: 356 FRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLID 415

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              K    ++  E+  ++    +  ++ +YN  +  LC  GR  EA  ++++  R GL  
Sbjct: 416 GHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQA 475

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D   Y  L+   CR    R A   + +MF +G   ++ TYN LI+ FS    +E + +LF
Sbjct: 476 DTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLF 535

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
              +  G+ P   TYTS++ G C++ N+  A + FN+  +H            +  LC+ 
Sbjct: 536 AEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKE 595

Query: 554 GHFLVATKLLRGLSSDLGHSDSHVILL 580
                A +L   +  D G S   V  L
Sbjct: 596 SKLDEACQLYEAM-VDKGLSPCEVTRL 621



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 185/452 (40%), Gaps = 42/452 (9%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  +++     G+       FD+    G++ + I F   I   C+   + Q   ML+E+ 
Sbjct: 269 CTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMV 328

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMG 275
           K+             +I G CK    E+AF++  +L R  + KP+   Y  +   +    
Sbjct: 329 KK--GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKED 386

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E++L + ++ G+ P T  Y   I G        +A EL +++    F+ +    N
Sbjct: 387 KLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYN 446

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS----TLSNLSKNLCKRNKSDELVEVYKVL 391
           A I S+     +   +    +++KG    L     T + L   LC+R  + E +  +  +
Sbjct: 447 AFIDSLCK---KGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKM 503

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  DM +YN +++      R+ E+  +  E    GL P    Y S++   CR+  +
Sbjct: 504 FKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNV 563

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-------- 503
             A K +++M   GC+ +  TY  LIS   +  +++ A +L+  M++KG++P        
Sbjct: 564 SLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTL 623

Query: 504 ---------DAT---------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                     AT               T  +L+  LC E  +  A   F+K ++ D  + 
Sbjct: 624 AYEYCKQDDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVD 683

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           R  L+ F  +      + + + L   +S  +G
Sbjct: 684 RVTLTAFTTACYESNKYALVSDLSERISKGIG 715


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/553 (22%), Positives = 234/553 (42%), Gaps = 60/553 (10%)

Query: 66  LALGFFNWASQQP-NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LAL FF+WAS +P + +   +++ S+LK L+  R    I+ VL+ +K   +      +  
Sbjct: 72  LALKFFDWASTRPFSCSLDGVAHSSLLKLLASFRVFPEIELVLENMKAQHLKPTREAFSA 131

Query: 125 IIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM 180
           +I +  +  +  +A  +F+ V+   NC    P +   NSLL  L   G +D AL+++D+M
Sbjct: 132 LILAYGESGSLDRALQLFHTVREMHNCL---PTVVASNSLLNGLVKSGKVDVALQLYDKM 188

Query: 181 ----SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
                  G         + +   C   K+ +   ++ +  +     +   V   +II G+
Sbjct: 189 LQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKD--RWGKGCVPHVVFYNMIIDGY 246

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAY-------------------------------- 264
           CK   ++ A + L EL+++   P    Y                                
Sbjct: 247 CKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNV 306

Query: 265 ----RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                ++  EFK  G V +    +++  ++G  P    Y   I       RI EA E  E
Sbjct: 307 KVFNNVIDAEFKY-GLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLE 365

Query: 321 V-----IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
                 ++  KF+    +++A       +  ++A + F  + E G  P L +       +
Sbjct: 366 KAKERGLLPNKFSY-TPLMHAYCKQGDYV--KAAGMLFR-IAEIGEKPDLVSYGAFIHGV 421

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
               + D  + V + +     F D + YNV++S LC +GR      ++ EM  + + PDV
Sbjct: 422 VVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDV 481

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             + +LM+   R   L  A K++  +   G    +  YN +I  F + G++  AL   + 
Sbjct: 482 YVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNK 541

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M     APD  TY+++++G  ++ ++ +A ++F + + H         ++ +   C++  
Sbjct: 542 MKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKAD 601

Query: 556 FLVATKLLRGLSS 568
            + A K+ RG+ S
Sbjct: 602 MIRAEKVFRGMKS 614



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 176/416 (42%), Gaps = 19/416 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  II    +  + Q A     E+K        E   +L+      G  +   ++  EM+
Sbjct: 239 YNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMA 298

Query: 182 HRGVEFSTIGFGVFI---WKFCENAKLGQVLSMLDEVR-----KRENSMINGSVIAVLII 233
            RG+  +   F   I   +K+    K  + +  + E+         N+MIN S       
Sbjct: 299 ARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFS------- 351

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
              CKG R++EA + L++ + R   P+  +Y  +   +   G   +   +L +  ++G  
Sbjct: 352 ---CKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEK 408

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI-VF 352
           P    Y  FI G++V   I  A  + E ++      D  + N L+  +       A+ + 
Sbjct: 409 PDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLL 468

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            + M+++   P +   + L     +  + DE ++++KV+        +  YN M+   C 
Sbjct: 469 LSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCK 528

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G++ +A   + +MK     PD   Y+++++   ++  +  A K++ QM       N+ T
Sbjct: 529 FGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVIT 588

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           Y  LI+ F +  ++  A ++F  M    + P+  TYT+L+ G  +    + A  +F
Sbjct: 589 YTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIF 644



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 115/280 (41%), Gaps = 17/280 (6%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +L+     +G +D A+K+F  +  +GV+   +G+   I  FC+  K+   LS L++++  
Sbjct: 486 TLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNV 545

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            ++          +I G+ K   +  A K+  ++   + KP+ I Y  +   F     + 
Sbjct: 546 HHA--PDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMI 603

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
             E V +  +   + P    Y   + G     +  +A  + E+++      +D   + LI
Sbjct: 604 RAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLI 663

Query: 339 GSVSSI--------------DPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
             +++               + RS I+ FF  M+ +G    ++  +++   LCK    D 
Sbjct: 664 NGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDT 723

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              +   +    +  D   +  M+  LC  G+ +E   +I
Sbjct: 724 AQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKEWRNII 763


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 200/445 (44%), Gaps = 11/445 (2%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           I  D  +Y  +I  L +    ++  S+F+        +   I +S++      G +  A+
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLI 232
           +++  M   G+  + + + + I   C N ++ +   +  ++ K+  E S++  S +    
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL---- 421

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I GFCK + + + F +   +  +   PD +   ++       G + E      +  K G+
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSA 349
                 +   I G    +R  +  ++   I+ G + +  DV+   +   G         A
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKM--YILMGMYKVIPDVVTYTVLVKGLAEQGRLDEA 539

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  +++KG  P       L    CK+      ++++K++ +N  F D+  YNV+++ 
Sbjct: 540 LALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINM 599

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G +     +++E+ + GL+PD+  YN+++   C   +   A KL++ +       N
Sbjct: 600 FFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPN 659

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             T+ ILI  + + G ++ A+ +F +MLE+G  P+  TY+ L++G  +  N ++AFE++ 
Sbjct: 660 AITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYE 719

Query: 530 KSVNHDVMLARSILSTFMISLCRRG 554
           K +   V       S  +  LC++G
Sbjct: 720 KMLGDRVSPNIVSYSILIDGLCKKG 744



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 215/503 (42%), Gaps = 54/503 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  F W S+        +S+++  + L L    + ID +L+  +  ++     VY F+ 
Sbjct: 159 AVDTFAWMSKM----GVSISHYAASEMLDLLIDSDRIDVILENYE--EMCKGLGVYEFVF 212

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG 184
            S ++    +K  + F+        + P+I  CN +L  L     I  A   FD M   G
Sbjct: 213 NSFLKRGEVEKGLN-FHRALVE-RGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
              + + F   I  +C+  +L +  S+ + +   E  ++   VI  ++I+G  +  ++EE
Sbjct: 271 PSPNLVTFSTLINVYCKELRLDEAFSLYNLMI--EKGIVPDLVIYSILINGLFRAGKLEE 328

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
              +      R  K D + +  + + +  +G + +   V  +  K G++P    Y   I 
Sbjct: 329 GNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILIN 388

Query: 305 GLIVERRICEA-KELGEVIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKG 360
           GL    R+ EA    G+++  G   ++  VL  ++LI G   S + R     +  M+ KG
Sbjct: 389 GLCRNGRVLEACGVFGQILKQG---LEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKG 445

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVY-----KVLSANDYF------------------ 397
            VP +   S L   L ++   DE +  +     + L+ N+Y                   
Sbjct: 446 HVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGL 505

Query: 398 ------------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                        D+ +Y V+V  L   GRL EA  +  ++ +KG  PD   Y +L++  
Sbjct: 506 KMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGF 565

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C++       +++  M ++G   ++  YN+LI+ F   G +E  L L   +++ G+ PD 
Sbjct: 566 CKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDI 625

Query: 506 TTYTSLLEGLCQETNLQAAFEVF 528
            TY +++ G C       A ++F
Sbjct: 626 VTYNTMICGYCSLKIFSKAIKLF 648



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 22/219 (10%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF+ M+  G  P L T S L    CK  + DE   +Y ++       D+  Y+++++ L 
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G+L E   +      +G+  DV  ++S+M+A  R   L  A +++ +M   G S N+ 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ILI+     G +  A  +F  +L++G+ P   TY+SL++G C+  NL+  F ++   
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYG-- 439

Query: 532 VNHDVMLARSILSTFMISLCRRGH---FLVATKLLRGLS 567
               +ML             R+GH    +V + L+ GLS
Sbjct: 440 ----IML-------------RKGHVPDVVVCSMLINGLS 461



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/493 (19%), Positives = 201/493 (40%), Gaps = 50/493 (10%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  ++  L  + ++   +S+        + +D  ++  I+ + ++  +  KA  V+   +
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVY--TR 370

Query: 147 FNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC--EN 202
              E I P +     L+  L  +G +  A  +F ++  +G+E S + +   I  FC  EN
Sbjct: 371 MLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSEN 430

Query: 203 AKLG----------------QVLSMLDEVRKRENSM----------------INGSVIAV 230
            + G                 V SML     R+  M                +N  +   
Sbjct: 431 LRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNA 490

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI  G  + KR  +  K+   + + +  PD + Y ++ +     G + E   +  +  K 
Sbjct: 491 LI-DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKK 549

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI------GSVSSI 344
           G +P    Y   I G   +R      ++ +++ S     D  + N LI      G V ++
Sbjct: 550 GFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENV 609

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                +     +I+ G  P + T + +    C      + +++++VL       +  ++ 
Sbjct: 610 -----LELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFT 664

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +++   C  GR+ +A  +   M  +G +P++  Y+ L++   + +    A +L+++M   
Sbjct: 665 ILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGD 724

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             S N+ +Y+ILI    + G +E A   F   + + + PD   Y  L+ G C+   L  A
Sbjct: 725 RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEA 784

Query: 525 FEVFNKSVNHDVM 537
             +++  + + +M
Sbjct: 785 MMLYDHMLVNGIM 797



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 147/340 (43%), Gaps = 15/340 (4%)

Query: 263 AYRIVAEEFKLMGSV-----FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            Y  V   F   G V     F R +V +     G+ P+  D  + + GL +  +I  A +
Sbjct: 207 VYEFVFNSFLKRGEVEKGLNFHRALVER-----GLVPKIVDCNKILKGLCMGNQIGVASD 261

Query: 318 LGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             +++V    + +    + LI      +    A   +N MIEKG VP L   S L   L 
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  K +E   ++ +  A     D+  ++ ++      G L +A  V   M ++G+ P+V 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ L+   CR   +  A  ++ Q+   G   ++ TY+ LI  F +   +     L+  M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC---RR 553
           L KG  PD    + L+ GL ++  +  A   F ++V   + L   + +  +I  C   +R
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNA-LIDGCFRLKR 500

Query: 554 GHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
               +   +L G+   +    ++ +L+K LA+   ++ A+
Sbjct: 501 TRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 145/362 (40%), Gaps = 40/362 (11%)

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
           + LKM+  M    V    + + V +    E  +L + L++  ++ K+  S     +I   
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS--PDHIIYCT 560

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I GFCK +      ++   ++     PD   Y ++   F   G V     +L++  K G
Sbjct: 561 LIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYG 620

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SA 349
           + P    Y   I G    +   +A +L EV+  G+   +      LI +    D R   A
Sbjct: 621 LEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCK-DGRMDDA 679

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           ++ F+ M+E+G  P + T S L     K   ++   E+Y+ +  +    ++ SY++++  
Sbjct: 680 MLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDG 739

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G + EA    Q    + L PDV                                  
Sbjct: 740 LCKKGLMEEASLAFQCAIGRHLLPDVI--------------------------------- 766

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
              Y ILI  + +VG +  A+ L+ +ML  G+ PD     +L E   Q++       VF 
Sbjct: 767 --AYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQASIYSTVFP 824

Query: 530 KS 531
           +S
Sbjct: 825 ES 826


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 140/675 (20%), Positives = 273/675 (40%), Gaps = 121/675 (17%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W   LE  L+     +   P LV  VI    L    +AL +F W  ++    HSP +Y++
Sbjct: 82  WGAALEDALNTFD--EMPQPELVVGVIRR--LKDVRVALHYFRWVERKTKQLHSPEAYNA 137

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV---FNEVK 146
           +L  ++ +R +  ++ +L+++ +      ++    ++ S ++ +  ++AF V     + K
Sbjct: 138 LLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFK 197

Query: 147 F----------------------------NCEDIGPEIC----NSLLAVLASDGYIDNAL 174
           F                              ++IG E+      +L+ V A +G +D AL
Sbjct: 198 FRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAAL 257

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            + DEM         + + V I  F +  K+        E++ +   ++   V    +I 
Sbjct: 258 SLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQ--GLVPDDVTFTSMIG 315

Query: 235 GFCKGKRVEEAFKVLDEL-----------------------------------RIRECKP 259
             CK +RV+EA ++ +EL                                   + + C P
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI---------------- 303
             IAY  +       G V E   +L+   K+  AP    Y   I                
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEA-MKMDAAPNLTSYNILIDMLCKAGELEAALKVQ 434

Query: 304 -----LGL--------IVERRICEAKELGEVI-----VSGKFTIDDDV-LNALIGSVSSI 344
                 GL        I+  R+C+A+ L E       +  K    D V   +LI  +   
Sbjct: 435 DSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRH 494

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A + +  M++ G+ P     ++L +N  K  + ++  ++YK +       D+   
Sbjct: 495 GKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLL 554

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N  +  +  +G + +   + +E+K +GL PDV  Y+ L+    +    +   KL+ +M  
Sbjct: 555 NNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKE 614

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   + + YNI+I  F + G++  A +L   M  KG+ P   TY S+++GL +   L  
Sbjct: 615 QGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDE 674

Query: 524 AFEVF----NKSVNHDVMLARSILSTF-MISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
           A+ +F    +K+V+ +V++  S++  F  +      + ++   + +GL+ +   + +   
Sbjct: 675 AYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN---TYTWNC 731

Query: 579 LLKSLADAREVEMAI 593
           LL +L  A E++ A+
Sbjct: 732 LLDALVKAEEIDEAL 746



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 173/400 (43%), Gaps = 4/400 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L   G ++ AL++ + M        T  + + I   C+  +L   L + D ++ 
Sbjct: 381 NCILTCLGRKGKVEEALRILEAMKMDAAPNLT-SYNILIDMLCKAGELEAALKVQDSMK- 438

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +    +   ++I   CK +R++EA  +   L  + C PD + +  + +     G V
Sbjct: 439 -EAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKV 497

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +  ++ +K    G  P    Y   I       R  +  ++ + ++    + D  +LN  
Sbjct: 498 NDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNY 557

Query: 338 IGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           +  V  + +       F  +  +G  P + + S L   L K   S +  +++  +     
Sbjct: 558 MDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGL 617

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +YN+++   C SG++ +AY +++EMK KGL P V  Y S+++   + D L  A  
Sbjct: 618 HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYM 677

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L+++  +     N+  Y+ LI  F +VG I+ A  +   +++KG+ P+  T+  LL+ L 
Sbjct: 678 LFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALV 737

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +   +  A   F    N          S  +  LC+   F
Sbjct: 738 KAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKF 777



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 203/488 (41%), Gaps = 53/488 (10%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++       + N   S+L++ K          Y  I+  L +    ++A  +   +
Sbjct: 344 AYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K    D  P +   N L+ +L   G ++ ALK+ D M   G+  + I   + I + C+  
Sbjct: 404 KM---DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQ 460

Query: 204 KLGQVLSM---LDEVRKRENS-----MING-------------------------SVIAV 230
           +L +  S+   LD      +S     +I+G                         +V+  
Sbjct: 461 RLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYT 520

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I  F K  R E+  K+  E+  R C PD +      +     G + +   + ++ +  
Sbjct: 521 SLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ 580

Query: 291 GVAPRTNDYREFILGLI-------VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           G+ P    Y   I GL+         +   E KE G         +D    N +I G   
Sbjct: 581 GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQG-------LHLDTRAYNIVIDGFCK 633

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S     A      M  KG  PT+ T  ++   L K ++ DE   +++   +     ++  
Sbjct: 634 SGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVV 693

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y+ ++      GR+ EAY +++E+ +KGL P+   +N L++A  + + +  A   +  M 
Sbjct: 694 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMK 753

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              C  N  TY+I+++   +V +   A   +  M ++G+ P+  TYT+++ GL +  N+ 
Sbjct: 754 NLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVL 813

Query: 523 AAFEVFNK 530
            A ++F +
Sbjct: 814 EAKDLFER 821



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 183/412 (44%), Gaps = 7/412 (1%)

Query: 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
           T DS  +  +I  L +      A+ ++ ++  + +     +  SL+      G  ++  K
Sbjct: 478 TPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHK 537

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           ++ EM HRG     +    ++    +  ++ +  ++ +E++ +   +        ++IHG
Sbjct: 538 IYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ--GLTPDVRSYSILIHG 595

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
             KG   ++ +K+  E++ +    D  AY IV + F   G V +   +L++ +  G+ P 
Sbjct: 596 LVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPT 655

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVF 352
              Y   I GL    R+ EA  L E   S    ++  V ++LI   G V  ID   A + 
Sbjct: 656 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRID--EAYLI 713

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
              +++KG  P   T + L   L K  + DE +  ++ +       +  +Y++MV+ LC 
Sbjct: 714 LEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
             +  +A+   QEM+++GL P+   Y +++    R   +  AK L+++  +SG   +   
Sbjct: 774 VRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSAC 833

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           YN +I   S   +   A  LF     KG    + T   LL+ L +   L+ A
Sbjct: 834 YNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 104/268 (38%), Gaps = 71/268 (26%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P  S  + L   L   +++D ++ + + +    Y   +  +  ++      GR+  A  +
Sbjct: 200 PAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSL 259

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EMK    + D                                   L  YN+ I  F +
Sbjct: 260 LDEMKSNSFNAD-----------------------------------LVLYNVCIDCFGK 284

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF-----NKSV----N 533
           VG+++ A + FH +  +G+ PD  T+TS++  LC+   +  A E+F     NKSV     
Sbjct: 285 VGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYA 344

Query: 534 HDVML-----------ARSIL---------------STFMISLCRRGHFLVATKLLRGLS 567
           ++ M+           A S+L               +  +  L R+G    A ++L  + 
Sbjct: 345 YNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMK 404

Query: 568 SDLGHS-DSHVILLKSLADAREVEMAIE 594
            D   +  S+ IL+  L  A E+E A++
Sbjct: 405 MDAAPNLTSYNILIDMLCKAGELEAALK 432


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 12/408 (2%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A+ +F EM       S + F  F   F   A+  Q   +LD  ++ E + I  ++  +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRF---FSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ FC+  +   A+ VL ++     +PD   +  + +   L G V E  V++ +  +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G  P    Y   + G+        A +L   +       D    + +I S+     ID 
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID- 245

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +AI  F  M  KG   ++ T ++L + LCK  K ++   + K + + +   ++ ++NV+
Sbjct: 246 -AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L+EA  + +EM  +G+ P++  YN+LM+  C ++ L  A  + D M  + C
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S ++ T+  LI  +  V  ++  +++F N+ ++G+  +A TY+ L++G CQ   ++ A E
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS---DLG 571
           +F + V+H V+         +  LC  G    A ++   L     DLG
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 213/496 (42%), Gaps = 55/496 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           SVL +V       D++ +  +I  L ++GK ++    V   V+  C+   P++   NS++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ---PDVVTYNSIV 200

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             +   G    AL +  +M  R V+     +   I   C +  +   +S+  E+   E  
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETK 257

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I  SV+    ++ G CK  +  +   +L ++  RE  P+ I + ++ + F   G + E 
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             + K+    G++P    Y   + G  ++ R+ EA  + +++V  K +            
Sbjct: 318 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------ 365

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                                 P + T ++L K  C   + D+ ++V++ +S      + 
Sbjct: 366 ----------------------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+++V   C SG+++ A  + QEM   G+ PDV  Y  L++  C    L  A ++++ 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +  S     +  Y  +I    + G++E A  LF ++  KGV P+  TYT ++ GLC++ +
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580
           L  A  +  K             +T + +  R G    + KL+  + S  G S       
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS-CGFS------- 575

Query: 581 KSLADAREVEMAIEHI 596
              ADA  ++M I+ +
Sbjct: 576 ---ADASSIKMVIDML 588



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/440 (19%), Positives = 195/440 (44%), Gaps = 7/440 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +P+ T    ++++++K L L  +++    ++ ++  N    D   Y  I+  + +  +T 
Sbjct: 155 EPDTT----TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A  +  +++           ++++  L  DG ID A+ +F EM  +G++ S + +   +
Sbjct: 211 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
              C+  K      +L ++  RE  ++   +   +++  F K  +++EA ++  E+  R 
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSRE--IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P+ I Y  + + + +   + E   +L    +   +P    +   I G  + +R+ +  
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 317 ELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           ++   I       +    + L+ G   S   + A   F  M+  G +P + T   L   L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K ++ +E+++ L  +     +  Y  ++  +C  G++ +A+ +   +  KG+ P+V
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y  ++   C++  L  A  L  +M   G + N  TYN LI      G++  + +L   
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568

Query: 496 MLEKGVAPDATTYTSLLEGL 515
           M   G + DA++   +++ L
Sbjct: 569 MKSCGFSADASSIKMVIDML 588



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 110/228 (48%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +  I    AI  F  MI    +P+L   S     + +  + + +++  K L  N    ++
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            + N+M++  C   +   AY V+ ++ + G +PD + +N+L++    E  +  A  L D+
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  +GC  ++ TYN +++     G+   AL L   M E+ V  D  TY+++++ LC++  
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           + AA  +F +     +  +    ++ +  LC+ G +     LL+ + S
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 13/295 (4%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-QQPNFTH--------SP--LSYHSILKSLS 95
           L   +V+R I P ++T + L   F      Q+ N  +        SP  ++Y++++    
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +  +++  +++L  +  NK + D   +  +I      K       VF  +          
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             + L+      G I  A ++F EM   GV    + +G+ +   C+N KL + L + +++
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +K +  +  G V+   II G CKG +VE+A+ +   L  +  KP+ + Y ++       G
Sbjct: 465 QKSKMDL--GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           S+ E  ++L+K  + G AP    Y   I   + +  +  + +L E + S  F+ D
Sbjct: 523 SLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 168/417 (40%), Gaps = 46/417 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L  +  +  A KM DEM+ +G     + +   +   C+       L  LDE  +
Sbjct: 163 NLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCK-------LDRLDEATE 215

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              +M   +     I+   C+  R++E F V+ ++  R  +P+ I Y  + + F   G +
Sbjct: 216 VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGEL 275

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L +    G  P    +   + GL  + R+ +A ++                   
Sbjct: 276 RMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDM------------------- 316

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                          + +M+ +G  P+  + + L + LC          +   +  +  F
Sbjct: 317 ---------------WRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCF 361

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y+ ++     +G L  A  +  +M R G  P+V  Y ++++  C++ +   AK L
Sbjct: 362 PNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSL 421

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M    C  N  T+N LI    +   +  AL +FH M   G  P+  TY  L+ GL +
Sbjct: 422 IDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFR 481

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSD 569
           E N   A  +  +  +H + L+    +T +  LC     R     V   +++G+  +
Sbjct: 482 EGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPN 538



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 181/443 (40%), Gaps = 62/443 (13%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY++I+ +L    ++  + SV+  +          V R + P++I       AF    E+
Sbjct: 226 SYNAIVLALCREFRMQEVFSVVSDM----------VGRGLQPNVITYTTIVDAFCKAGEL 275

Query: 146 KFNCEDIG--------PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +  C  +         P +    +L+  L  DG + +AL M+  M   G   ST+ + + 
Sbjct: 276 RMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNIL 335

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C    L    S+L+ + ++     N    + LI  GF K   +  A  + +++   
Sbjct: 336 IRGLCSVGDLKGASSILNSM-EQHGCFPNVRTYSTLI-DGFSKAGDLGGAISIWNDMSRS 393

Query: 256 ECKPDFIAYRIVAEEF--KLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRI 312
            CKP+ + Y  + + F  KLM   F +   L  K  L    P T  +   I      R +
Sbjct: 394 GCKPNVVVYTNMVDVFCKKLM---FNQAKSLIDKMLLENCPPNTVTFNTLI------RSL 444

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C+ + +G                             A+  F+ M   G VP   T + L 
Sbjct: 445 CDCRRVGR----------------------------ALGVFHEMRRHGCVPNGRTYNELI 476

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L +     + + +   + ++     + +YN +VS LC +   REA   + +M  +G+ 
Sbjct: 477 HGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 536

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+   +++++ A C+E  +R A  +   M    C  N+  Y IL+++     ++  A+  
Sbjct: 537 PNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTY 596

Query: 493 FHNMLEKGVAPDATTYTSLLEGL 515
              ML +G+ P+  T+  L+ G+
Sbjct: 597 LLKMLYEGIYPNTVTWNVLVRGV 619



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 37/231 (16%)

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD- 434
           C  N    +V VY  +  +    ++ +YN++V  LC + R+  A  ++ EM RKG  PD 
Sbjct: 135 CGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDD 194

Query: 435 -----------------------------VSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
                                         + YN+++ A CRE  ++    +   M   G
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRG 254

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              N+ TY  ++  F + GE+  A  +   M+  G  P+  T+T+L+ GL  +  +  A 
Sbjct: 255 LQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDAL 314

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576
           +++   V      +    +  +  LC  G        L+G SS L   + H
Sbjct: 315 DMWRWMVAEGWAPSTVSYNILIRGLCSVGD-------LKGASSILNSMEQH 358



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC E+++     ++D M   G   N+ TYN+L+    +   +  A ++   M  KG  PD
Sbjct: 134 CCGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPD 193

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF-----LVA 559
             TY +++  LC+   L  A EV        +    +  +  +++LCR         +V+
Sbjct: 194 DVTYATIVSVLCKLDRLDEATEVLAA-----MPPVAASYNAIVLALCREFRMQEVFSVVS 248

Query: 560 TKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
             + RGL  ++    ++  ++ +   A E+ MA
Sbjct: 249 DMVGRGLQPNV---ITYTTIVDAFCKAGELRMA 278



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 92/237 (38%), Gaps = 3/237 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  + W   +  +  S +SY+ +++ L     +    S+L  ++ +    +   Y  +I
Sbjct: 313 ALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLI 371

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
               +  +   A S++N++  +       +  +++ V       + A  + D+M      
Sbjct: 372 DGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCP 431

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +T+ F   I   C+  ++G+ L +  E+R R   + NG     L IHG  +     +A 
Sbjct: 432 PNTVTFNTLIRSLCDCRRVGRALGVFHEMR-RHGCVPNGRTYNEL-IHGLFREGNCGDAL 489

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            ++ E++    +   + Y  V           E  V + K    G+ P    +   I
Sbjct: 490 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAII 546


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 195/434 (44%), Gaps = 9/434 (2%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           +I +L +G   + A  +F  +K     I P +   N ++  L  +G +DNA ++ ++M+ 
Sbjct: 249 VINALCKGGKMENAIELF--MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTV 306

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKR 241
           +GV+ +   +G  I    +     +V  +LDE+     S  N +V+    +I G+CK   
Sbjct: 307 KGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMI---GSGFNPNVVVFNNLIDGYCKMGN 363

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +E A K+ D +  +   P  +    + + F     +   E  L++    G++   ++   
Sbjct: 364 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 423

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            +  L  + R   A    ++++S  F   D +L  L+ G         A   +  ++EKG
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 483

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
              +  T + L   LC   K  E   + K +       D  +YN ++   C  G++   +
Sbjct: 484 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 543

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + +EM ++G+ PD+  YN L+   C    L  A KLWD+  ASG   N+ TY I++  +
Sbjct: 544 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 603

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +   IE    LF+ +L K +  ++  Y  +++  CQ  N+ AA ++     +  ++   
Sbjct: 604 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 663

Query: 541 SILSTFMISLCRRG 554
           +  S+ +  +C  G
Sbjct: 664 ATYSSLIHGVCNIG 677



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 202/452 (44%), Gaps = 14/452 (3%)

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEM 180
            F++ SL++    +K   VF  +    E   P++ +  +++  L   G ++NA+++F +M
Sbjct: 213 NFLLSSLVKANEFEKCCEVFRVMS---EGACPDVFSFTNVINALCKGGKMENAIELFMKM 269

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G+  + + +   I   C+N +L      L E    +    N      LI +G  K  
Sbjct: 270 EKLGISPNVVTYNCIINGLCQNGRLDNAFE-LKEKMTVKGVQPNLKTYGALI-NGLIKLN 327

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTN 297
             ++   VLDE+      P+ + +  + + +  MG++   E  LK K  +    + P + 
Sbjct: 328 FFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNI---EGALKIKDVMISKNITPTSV 384

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFM 356
                + G     +I  A+   E I+S   +I  D   +++  +       SA  F   M
Sbjct: 385 TLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMM 444

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + +   P+   L+ L   LCK  K  E  E++  L          + N ++  LC +G+L
Sbjct: 445 LSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKL 504

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  +++EM  +GL  D   YN+L+   C E  +    +L ++M   G   ++ TYN L
Sbjct: 505 PEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFL 564

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +     VG+++ A++L+      G+  +  TY  ++EG C+   ++    +FN+ ++  +
Sbjct: 565 LRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKM 624

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            L   + +  + + C+ G+   A +LL  + S
Sbjct: 625 ELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 656



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/481 (20%), Positives = 211/481 (43%), Gaps = 5/481 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ I+  L  + +++    + +++ V  +  +   Y  +I  LI+     K   V +E
Sbjct: 279 VTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDE 338

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  +  +    + N+L+      G I+ ALK+ D M  + +  +++     +  FC++ +
Sbjct: 339 MIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 398

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIA 263
           +    + L+E+     S+   +  +V  +H  CK  R   AF+    +  R  +P D + 
Sbjct: 399 IEHAENALEEILSSGLSIHPDNCYSV--VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 456

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             +V    K    +   E+  +   K   A +       I GL    ++ EA  + + ++
Sbjct: 457 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTS-NALIHGLCGAGKLPEASRIVKEML 515

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                +D    NALI G  +             M ++G  P + T + L + LC   K D
Sbjct: 516 ERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLD 575

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + ++++    A+   +++ +Y +M+   C + R+ +   +  E+  K ++ +   YN ++
Sbjct: 576 DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIII 635

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +A C+   +  A +L + M + G   N  TY+ LI     +G +E A  L   M ++G  
Sbjct: 636 KAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFV 695

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P+   YT+L+ G C+   +  A   + + ++ ++   +   +  +   C+ G+   A  L
Sbjct: 696 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 755

Query: 563 L 563
           L
Sbjct: 756 L 756



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 189/453 (41%), Gaps = 44/453 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++ +S+++    S QI   ++ L+++  + +++       ++  L +      A
Sbjct: 378 NITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA 437

Query: 139 FSVFNEV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           F     +    F   D+   +   L+  L  DG    A +++  +  +G   S +     
Sbjct: 438 FRFTKMMLSRNFRPSDL---LLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNAL 494

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C   KL +   ++ E+ +R   M   +  A+++  GFC   +VE  F++ +E+  R
Sbjct: 495 IHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALIL--GFCNEGKVEGCFRLREEMTKR 552

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             +PD   Y  +      +G + +   +  + +  G+    + Y   + G     RI + 
Sbjct: 553 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 612

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           + L   ++S K  ++  V N +I     + +  +A+     M  KG +P  +T       
Sbjct: 613 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT------- 665

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                                       Y+ ++  +C  G + +A  +I EM+++G  P+
Sbjct: 666 ----------------------------YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 697

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L+   C+   +  A+  W +M +     N  TY ++I  + ++G +E A  L  
Sbjct: 698 VVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLI 757

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            M E G+ PD  TY  L  G C+  ++  AF+V
Sbjct: 758 KMKESGIVPDVVTYNVLTNGFCKANDMDNAFKV 790



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 132/273 (48%), Gaps = 3/273 (1%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           ++ +G  P + + +N+   LCK  K +  +E++  +       ++ +YN +++ LC +GR
Sbjct: 234 VMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGR 293

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L  A+ + ++M  KG+ P++  Y +L+    + +       + D+M  SG + N+  +N 
Sbjct: 294 LDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNN 353

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI  + ++G IEGAL++   M+ K + P + T  SL++G C+   ++ A     + ++  
Sbjct: 354 LIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSG 413

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLR-GLSSDLGHSDSHVILLKS--LADAREVEMA 592
           + +      + +  LC++  +  A +  +  LS +   SD  + +L      D + +E  
Sbjct: 414 LSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEAT 473

Query: 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625
               + +++ SP      +A +     +   PE
Sbjct: 474 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPE 506


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 162/378 (42%), Gaps = 7/378 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           + LL  +   G+   A+ +F ++  +G+  S     + I  +C  A L    S+L  + K
Sbjct: 59  DKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILK 118

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
              + +M+  + +    I+GFC    V +A     +L  +    D  +Y  +       G
Sbjct: 119 MGFQPNMVTFNTL----INGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNG 174

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +   +L+K  +  V P    Y   I GL  +R I +A  L  ++ S    +D    N
Sbjct: 175 QTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYN 234

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI    S+   R A      M+     P   T + L   LCK  +  E   V+ V+   
Sbjct: 235 SLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKR 294

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +YN ++   C S  + EA  +   M ++GL+PDV  YN L+   C+ D++  A
Sbjct: 295 GEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEA 354

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             L+ ++       NL TYN LI    ++G +     L   M ++G +PD  TY   L+ 
Sbjct: 355 MVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDA 414

Query: 515 LCQETNLQAAFEVFNKSV 532
            C+    + A  +F + V
Sbjct: 415 FCKSKPYEKAISLFRQIV 432



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 183/419 (43%), Gaps = 11/419 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+     +G +  A+    ++  +G       +G  I   C+N   GQ    L  ++K
Sbjct: 129 NTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKN---GQTRDALQLLQK 185

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E  ++  ++I    +I G CK + + +A ++   +  R    D +AY  +      +G 
Sbjct: 186 MEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQ 245

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             E   +L    +  + P    +   +  L  E RI EA+ +  V++      D    NA
Sbjct: 246 WREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNA 305

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           L+ G   S +   A   FN M+++G  P +   + L    CK +  DE + ++K +   +
Sbjct: 306 LMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKN 365

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              ++ +YN ++  LC  GR+     ++ EM  +G  PD+  YN  ++A C+      A 
Sbjct: 366 LVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAI 425

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ Q+   G   +   Y++++  F +  +++ A     ++L  G  P+  TYT ++  L
Sbjct: 426 SLFRQI-VQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINAL 484

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           C++ +   A  + +K  ++D         T + +L  R     A KL      RGL +D
Sbjct: 485 CKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVND 543



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/475 (21%), Positives = 200/475 (42%), Gaps = 20/475 (4%)

Query: 38  LHQLGLRDSLSPSLVARVINPYLLTHH-SLA---LGFFNWASQQPNFTHSPLSYHSILKS 93
           LH  G+  S++   +  +IN Y    H S A   LG       QPN     +++++++  
Sbjct: 81  LHSKGITPSIATLTI--LINCYCHQAHLSFAFSLLGTILKMGFQPNM----VTFNTLING 134

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-I 152
             ++  ++   +    +      LD   Y  +I  L +   T+ A  +  +++   ED +
Sbjct: 135 FCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKME---EDLV 191

Query: 153 GPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            P +   ++++  L  D  I +AL++F  ++ RG+    + +   I   C   +  +   
Sbjct: 192 RPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATR 251

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +L  +  R N   +     +L+    CK  R+ EA  V   +  R  KPD + Y  + E 
Sbjct: 252 LL-TMMVRGNINPDDYTFNILV-DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEG 309

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           F L  +V E   +  +  K G+ P   +Y   I G      + EA  L + I       +
Sbjct: 310 FCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPN 369

Query: 331 DDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
               N+LI  +  +   S +    + M ++G+ P + T +      CK    ++ + +++
Sbjct: 370 LATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFR 429

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +     + D   Y+V+V   C   +L+ A   +Q +   G  P+V  Y  ++ A C++ 
Sbjct: 430 QI-VQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDC 488

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
               A  L  +M  + C  +  T+  +I    E  E + A +L   M+E+G+  D
Sbjct: 489 SFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVND 543



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 95/211 (45%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           FN M+ K   P +     L   + +       + ++  L +      + +  ++++  C 
Sbjct: 43  FNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCH 102

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
              L  A+ ++  + + G  P++  +N+L+   C   ++  A      + A G   +  +
Sbjct: 103 QAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFS 162

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y  LI+   + G+   AL+L   M E  V P+  TY+++++GLC++  +  A  +F+   
Sbjct: 163 YGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVT 222

Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  +++     ++ +   C  G +  AT+LL
Sbjct: 223 SRGILVDVVAYNSLIHGCCSVGQWREATRLL 253


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 217/498 (43%), Gaps = 18/498 (3%)

Query: 63  HHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           HH  A       S +P+    P  +SY  ++++L   R  +    +L+ ++   +  D  
Sbjct: 92  HHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVV 151

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IGPEIC--NSLLAVLASDGYIDNALKMF 177
            Y  +I  L       KA  +  E+   CE  I P +   +SLL      G  ++  K+F
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEM---CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVF 208

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHG 235
            EMS +G+E   + +   I   C+  K  +   ++D + +R  E +++  +V+    I+ 
Sbjct: 209 VEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVL----INC 264

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVA 293
            CK   V+EA  VL ++  +   PD + Y  + +    +  + E   +L++  + K  V 
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    +   I GL    R+ +A ++  ++      ++    N LIG +  +   R A+  
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
            + M   G  P   T S L K  CK  + D   ++   +       ++  Y  ++  +C 
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G +  A  +  EM       DV  Y++++   C+   L+ AK+L   +   G + +  T
Sbjct: 445 QGMMERARNLFNEMDNN-FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           Y+I+I+ F++ G++E A  +   M   G  PD   + SL++G   +  +    E+  + +
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMI 563

Query: 533 NHDVMLARSILSTFMISL 550
             ++ L   I+ST   SL
Sbjct: 564 TKNIALDSKIISTLSTSL 581



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 201/451 (44%), Gaps = 47/451 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+  L +D   D A+ +   M   GV    + +G  I   C+ A++ + + ++ E+   E
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC--E 178

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           + +    V+   ++ G+CK  R E+  KV  E+  +  +PD + Y  + +    +G   +
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              V+    + G+ P    Y   I         C  KE                     G
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLI--------NCMCKE---------------------G 269

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK--VLSANDYF 397
           SV     + AI     M EKG  P + T + L K L    + DE + + +  V   N   
Sbjct: 270 SV-----KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ ++N ++  LC  GR+R+A+ V   M+  G   ++  YN L+    R   +R A +L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            D+M + G   +  TY+ILI  F ++ +++ A  L   M ++G+ P+   Y  LL  +C+
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGH 572
           +  ++ A  +FN+ ++++  L     ST +   C+ G    A +LL+     GL+ D   
Sbjct: 445 QGMMERARNLFNE-MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPD--- 500

Query: 573 SDSHVILLKSLADAREVEMAIEHIKWIQESS 603
           + ++ I++   A + ++E A   +K +  S 
Sbjct: 501 AVTYSIVINMFAKSGDMEAANGVLKQMTASG 531



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK---RKGLDPDVSFYNS 440
           L E   +L A     D  SYN +++ LC  G    A  +++ M         P+   Y  
Sbjct: 61  LGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTV 120

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           LM A C + L   A  L   M ++G   ++ TY  LI    +  E++ A+ L   M E G
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFM-ISLCRRGH 555
           + P+   Y+SLL+G C+    +   +VF     K +  DV++   ++ +   +   ++ H
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 556 FLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            ++   + RGL  ++    ++ +L+  +     V+ AI  +K + E
Sbjct: 241 GVMDMMVRRGLEPNV---VTYNVLINCMCKEGSVKEAIGVLKKMSE 283


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/482 (20%), Positives = 213/482 (44%), Gaps = 39/482 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++  L  + + +  D + K++    +  +   Y  +I +L +    + A  +F++
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++     +     NSL+      G +D A  +   M   G+  +   +   I   C N  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + +  E+ +R  +  N +  A  +I+GFCK K+++EA ++ D++      P+ + +
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTA--LINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE------- 317
            ++ E + L+G++ +   +  +  ++G+ P    YR  I GL +   + +A E       
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 318 -------------LGEVIVSGKFT-------------IDDDVLNALI---GSVSSIDPRS 348
                        L  +   G+FT             +  D+++  I    ++   D   
Sbjct: 577 SYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEK 636

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           + V F  M E+G  P     + +   L K     + +  +  +  + Y  +  ++ V+++
Sbjct: 637 SCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLIN 696

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC SG L  A  + +EM    + P+   YN  ++    E  +  AK L   M   G   
Sbjct: 697 NLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLA 755

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ ++NILI    + G+I+ A+ L   + E G +PD  +Y++++  LC+  ++  AFE++
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 529 NK 530
           N+
Sbjct: 816 NE 817



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 185/415 (44%), Gaps = 24/415 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +   M   GV+ S + + V ++  C+N ++ + + +       +N M+N  V A
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEV-------KNVMVNIGVTA 266

Query: 230 -----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                  +++GFC+ + +E A ++  ++      P       + +E +    V E   + 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K   LG+ P    Y   I  L    R  +A  L + + +G+    ++V  A++  + ++
Sbjct: 327 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAIL--IHAL 383

Query: 345 DPRS----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             R     A+  F+ M +KG   T+   ++L    CK+   D    +   +         
Sbjct: 384 CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            SY+ +++ LC +G L  A  + +EM  +G+  +   + +L+   C++  +  A +L+D+
Sbjct: 444 ASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  S    N  T+N++I  +  VG I  A +L+  M+E G+ PD  TY SL+ GLC  + 
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSG 563

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           +  A E      N   +L    L+  +  L R G F     L     +RG+  DL
Sbjct: 564 VSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDL 618



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 167/369 (45%), Gaps = 19/369 (5%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FD+M   GV      +   I  +CE+  L     ++  VR     +   +V   ++
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV--VRMESEGVKASAVPYNVL 239

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR---K 289
           ++G CK  RV+EA +V + +       D + YR +   F  M    E E+ L+      +
Sbjct: 240 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME---ELEMALRITHDMIR 296

Query: 290 LGVAPRTNDYREFILGL----IVERRICEAKELGEV-IVSGKFTIDDDVLNALIGSVSSI 344
           LG  P   +    I  L    +VE     A +LG++ +V   F       NALI  +   
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFA-----YNALIDKLCKN 351

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +    A   F  M  +G  P   T + L   LCKR   ++ + ++  +        +  Y
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPY 411

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++  C  G L  A G++  M ++GL P  + Y+ L+   CR   L  A +L  +M  
Sbjct: 412 NSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAE 471

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G + N  T+  LI+ F +  +++ A RLF  M++  V P+  T+  ++EG C   N++ 
Sbjct: 472 RGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRK 531

Query: 524 AFEVFNKSV 532
           AF+++++ V
Sbjct: 532 AFQLYDQMV 540



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/403 (20%), Positives = 159/403 (39%), Gaps = 37/403 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++++ +++   L   I     +  Q+    +  D+  YR +I  L       KA
Sbjct: 508 NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKA 567

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
                +++ +   +      +LL  L  +G       ++DEM+ RGV+   + F + ++ 
Sbjct: 568 NEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYA 627

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
             +     +   +  E++  E  +    +    +I    K + + +A    D++ I    
Sbjct: 628 ALKQHDKEKSCVLFREMK--EQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYS 685

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+ + + ++       G +   E++ K+     V P    Y  F+     E  + +AK+L
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
              ++ G                      ++IV FN +I               K LCK 
Sbjct: 746 HSAMLQGHL--------------------ASIVSFNILI---------------KGLCKA 770

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K  E +++ + ++ + +  D  SY+ ++  LC  G + +A+ +  EM  KGL PDV  Y
Sbjct: 771 GKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAY 830

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           N  +  C        A  ++  M  SG   N  TY  L+S  S
Sbjct: 831 NIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 200/445 (44%), Gaps = 11/445 (2%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           I  D  +Y  +I  L +    ++  S+F+        +   I +S++      G +  A+
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLI 232
           +++  M   G+  + + + + I   C N ++ +   +  ++ K+  E S++  S +    
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL---- 421

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I GFCK + + + F +   +  +   PD +   ++       G + E      +  K G+
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSA 349
                 +   I G    +R  +  ++   I+ G + +  DV+   +   G         A
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKM--YILMGMYKVIPDVVTYTVLVKGLAEQGRLDEA 539

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  +++KG  P       L    CK+      ++++K++ +N  F D+  YNV+++ 
Sbjct: 540 LALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINM 599

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G +     +++E+ + GL+PD+  YN+++   C   +   A KL++ +       N
Sbjct: 600 FFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPN 659

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             T+ ILI  + + G ++ A+ +F +MLE+G  P+  TY+ L++G  +  N ++AFE++ 
Sbjct: 660 AITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYE 719

Query: 530 KSVNHDVMLARSILSTFMISLCRRG 554
           K +   V       S  +  LC++G
Sbjct: 720 KMLGDRVSPNIVSYSILIDGLCKKG 744



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 215/503 (42%), Gaps = 54/503 (10%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+  F W S+        +S+++  + L L    + ID +L+  +  ++     VY F+ 
Sbjct: 159 AVDTFAWMSKM----GVSISHYAASEMLDLLIDSDRIDVILENYE--EMCKGLGVYEFVF 212

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRG 184
            S ++    +K  + F+        + P+I  CN +L  L     I  A   FD M   G
Sbjct: 213 NSFLKRGEVEKGLN-FHRALVE-RGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
              + + F   I  +C+  +L +  S+ + +   E  ++   VI  ++I+G  +  ++EE
Sbjct: 271 PSPNLVTFSTLINVYCKELRLDEAFSLYNLMI--EKGIVPDLVIYSILINGLFRAGKLEE 328

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
              +      R  K D + +  + + +  +G + +   V  +  K G++P    Y   I 
Sbjct: 329 GNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILIN 388

Query: 305 GLIVERRICEA-KELGEVIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKG 360
           GL    R+ EA    G+++  G   ++  VL  ++LI G   S + R     +  M+ KG
Sbjct: 389 GLCRNGRVLEACGVFGQILKQG---LEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKG 445

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVY-----KVLSANDYF------------------ 397
            VP +   S L   L ++   DE +  +     + L+ N+Y                   
Sbjct: 446 HVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGL 505

Query: 398 ------------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                        D+ +Y V+V  L   GRL EA  +  ++ +KG  PD   Y +L++  
Sbjct: 506 KMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGF 565

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C++       +++  M ++G   ++  YN+LI+ F   G +E  L L   +++ G+ PD 
Sbjct: 566 CKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDI 625

Query: 506 TTYTSLLEGLCQETNLQAAFEVF 528
            TY +++ G C       A ++F
Sbjct: 626 VTYNTMICGYCSLKIFSKAIKLF 648



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 22/219 (10%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF+ M+  G  P L T S L    CK  + DE   +Y ++       D+  Y+++++ L 
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G+L E   +      +G+  DV  ++S+M+A  R   L  A +++ +M   G S N+ 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY+ILI+     G +  A  +F  +L++G+ P   TY+SL++G C+  NL+  F ++   
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYG-- 439

Query: 532 VNHDVMLARSILSTFMISLCRRGH---FLVATKLLRGLS 567
               +ML             R+GH    +V + L+ GLS
Sbjct: 440 ----IML-------------RKGHVPDVVVCSMLINGLS 461



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/493 (19%), Positives = 201/493 (40%), Gaps = 50/493 (10%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  ++  L  + ++   +S+        + +D  ++  I+ + ++  +  KA  V+  + 
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372

Query: 147 FNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC--EN 202
              E I P +     L+  L  +G +  A  +F ++  +G+E S + +   I  FC  EN
Sbjct: 373 --KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSEN 430

Query: 203 AKLG----------------QVLSMLDEVRKRENSM----------------INGSVIAV 230
            + G                 V SML     R+  M                +N  +   
Sbjct: 431 LRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNA 490

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI  G  + KR  +  K+   + + +  PD + Y ++ +     G + E   +  +  K 
Sbjct: 491 LI-DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKK 549

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI------GSVSSI 344
           G +P    Y   I G   +R      ++ +++ S     D  + N LI      G V ++
Sbjct: 550 GFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENV 609

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                +     +I+ G  P + T + +    C      + +++++VL       +  ++ 
Sbjct: 610 -----LELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFT 664

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +++   C  GR+ +A  +   M  +G +P++  Y+ L++   + +    A +L+++M   
Sbjct: 665 ILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGD 724

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             S N+ +Y+ILI    + G +E A   F   + + + PD   Y  L+ G C+   L  A
Sbjct: 725 RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEA 784

Query: 525 FEVFNKSVNHDVM 537
             +++  + + +M
Sbjct: 785 MMLYDHMLVNGIM 797



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 147/340 (43%), Gaps = 15/340 (4%)

Query: 263 AYRIVAEEFKLMGSV-----FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            Y  V   F   G V     F R +V +     G+ P+  D  + + GL +  +I  A +
Sbjct: 207 VYEFVFNSFLKRGEVEKGLNFHRALVER-----GLVPKIVDCNKILKGLCMGNQIGVASD 261

Query: 318 LGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             +++V    + +    + LI      +    A   +N MIEKG VP L   S L   L 
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +  K +E   ++ +  A     D+  ++ ++      G L +A  V   M ++G+ P+V 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+ L+   CR   +  A  ++ Q+   G   ++ TY+ LI  F +   +     L+  M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC---RR 553
           L KG  PD    + L+ GL ++  +  A   F ++V   + L   + +  +I  C   +R
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNA-LIDGCFRLKR 500

Query: 554 GHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
               +   +L G+   +    ++ +L+K LA+   ++ A+
Sbjct: 501 TRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 138/344 (40%), Gaps = 40/344 (11%)

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
           + LKM+  M    V    + + V +    E  +L + L++  ++ K+  S     +I   
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS--PDHIIYCT 560

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I GFCK +      ++   ++     PD   Y ++   F   G V     +L++  K G
Sbjct: 561 LIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYG 620

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SA 349
           + P    Y   I G    +   +A +L EV+  G+   +      LI +    D R   A
Sbjct: 621 LEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCK-DGRMDDA 679

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           ++ F+ M+E+G  P + T S L     K   ++   E+Y+ +  +    ++ SY++++  
Sbjct: 680 MLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDG 739

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
           LC  G + EA    Q    + L PDV                                  
Sbjct: 740 LCKKGLMEEASLAFQCAIGRHLLPDVI--------------------------------- 766

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
              Y ILI  + +VG +  A+ L+ +ML  G+ PD     +L E
Sbjct: 767 --AYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 177/397 (44%), Gaps = 30/397 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV-- 215
           N L+      G +D A  +  ++   G   + + F   +  FC N K+   L + DE+  
Sbjct: 93  NILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVA 152

Query: 216 -RKRENSMINGSVIAVLIIHGFCKGK--RVEEAFKVLDELRIRE-CKPDFIAYRIVAEEF 271
            R R + ++ G+     +I+G CK K  +   A ++L ++  R+  KP+ I Y  V    
Sbjct: 153 RRIRFDDVLYGT-----LINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGL 207

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----------------IVERRICEA 315
              G++ E  V+  K    G+ P    Y   I GL                 +  ++ EA
Sbjct: 208 CKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEA 267

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +EL  V++      D    N L+ G   +     A   F+ M+E+G  P   T + L   
Sbjct: 268 RELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHG 327

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            C  +K DE   ++  +       D+ SYN+++   C   R+ EA  ++++M  K L P+
Sbjct: 328 YCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPN 387

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQM-FASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +  YNS+++  C+   +  A KL D+M +      ++ TYNIL+     +  +E A+  F
Sbjct: 388 IITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFF 447

Query: 494 -HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            H + E+  AP+  +Y  L+ G C+   L  A  +FN
Sbjct: 448 KHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFN 484



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 204/471 (43%), Gaps = 24/471 (5%)

Query: 138 AFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           AFSV  ++ K+ C          +     +D  +D AL ++DEM  R + F  + +G  I
Sbjct: 108 AFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLD-ALYIYDEMVARRIRFDDVLYGTLI 166

Query: 197 WKFCENAKLGQVLSMLDEVRK-RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
              C+ +K+G+  + +  ++K  E  ++  ++I    ++HG CK   + EA  +  ++ +
Sbjct: 167 NGLCK-SKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIV 225

Query: 255 RECKPDFIAYRIVA----------------EEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           +   PD   Y  +                   F L   V E   +     + G      +
Sbjct: 226 QGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIIN 285

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   + G  +  ++ EA++L  ++V      D      L+     ID    A   F+ MI
Sbjct: 286 YNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMI 345

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E+G VP + + + L K  CK  +  E + + + +   +   ++ +YN +V  LC SG + 
Sbjct: 346 ERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGIL 405

Query: 418 EAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQM-FASGCSGNLKTYNI 475
           +A+ ++ EM      P DV+ YN L+E+ CR + +  A   +  + F    + N+ +YNI
Sbjct: 406 DAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNI 465

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LIS   +   ++ A+ LF++M  K + PD  TY  LL+ L     L  A  +  + V+  
Sbjct: 466 LISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQG 525

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           +       +  +  L + G    A K+   LS    H D    ++  L   
Sbjct: 526 ISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTYIINELCKG 576



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 180/406 (44%), Gaps = 42/406 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           +L  +A   Y   A+ ++  M ++GV   T+ F + I  FC   ++    S++ ++ K  
Sbjct: 60  ILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWG 119

Query: 218 -RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KL 273
            R N      V    ++ GFC   ++ +A  + DE+  R  + D + Y  +       K+
Sbjct: 120 CRPNV-----VTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKI 174

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDD 332
                  +++ K + +  V P    Y   + GL  +  I EA+ L  ++IV G F  D  
Sbjct: 175 GKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFP-DIF 233

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             ++LI  +     R  +                  ++L    C  NK DE  E++ V+ 
Sbjct: 234 TYSSLIYGLCRAGQRKEV------------------TSLLNGFCLNNKVDEARELFNVMI 275

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +YN++++  C + ++ EA  +   M  +G  PD   Y  LM   C  D + 
Sbjct: 276 ERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVD 335

Query: 453 PAKKLWDQMFASGCSGNLKTYNILIS---KFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            A+ L+  M   G   ++ +YNILI    KF  VGE   A+ L  +M  K + P+  TY 
Sbjct: 336 EARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGE---AMNLLEDMFLKNLVPNIITYN 392

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI---SLCR 552
           S+++GLC+   +  A+++ ++   H        ++T+ I   SLCR
Sbjct: 393 SVVDGLCKSGGILDAWKLVDEM--HYCCQPPPDVTTYNILLESLCR 436



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            SID   A+  F+ M++   +P++   + +   + K       +++Y ++          
Sbjct: 33  DSID--DAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTV 90

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           ++N++++  C  G++  A+ V+ ++ + G  P+V  + +LM+  C  D +  A  ++D+M
Sbjct: 91  TFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEM 150

Query: 462 FASGCSGNLKTYNILISKF--SEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQE 518
            A     +   Y  LI+    S++G+   A++L   M E+  V P+   Y +++ GLC++
Sbjct: 151 VARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKD 210

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            N+  A  + +K +   +       S+ +  LCR G     T LL G 
Sbjct: 211 GNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGF 258



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 61/142 (42%)

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C    + +A  +   M      P +  +  ++    +      A  L+  M   G     
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T+NILI+ F  +G+++ A  +   +L+ G  P+  T+T+L++G C    +  A  ++++
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 531 SVNHDVMLARSILSTFMISLCR 552
            V   +     +  T +  LC+
Sbjct: 150 MVARRIRFDDVLYGTLINGLCK 171


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 188/461 (40%), Gaps = 54/461 (11%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           S  PN     +SY++++       Q++   ++   +    I  +   Y  +I  L + + 
Sbjct: 199 SCPPNL----VSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQV 254

Query: 135 TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
             +A  VF ++    + + P I     L+    S G     ++M  EMS  G+E     +
Sbjct: 255 VDRAEGVFQQMID--KGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTY 312

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-----IAVLIIHGFCKGKRVEEAFK 247
           G+ +   C+  K         E RK  +SMI   +     I  +I+HG+     + E   
Sbjct: 313 GLLLDYLCKKGKC-------TEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHS 365

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
            LD +      P+   + IV   F     + E   +  K R+ G++P   +Y   I  L 
Sbjct: 366 FLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALC 425

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
                    +LG V        DD  L                  FN MI +G  P +  
Sbjct: 426 ---------KLGRV--------DDAELK-----------------FNQMINEGVAPNIVV 451

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            ++L   LC  +K ++  E++  +       ++  +N ++  LCT GR+ +A  +I  M+
Sbjct: 452 FTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLME 511

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           R G  PD+  YN+L+   C       A KL D M + G   N  TYN L+  +   G I+
Sbjct: 512 RVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRID 571

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            A  +F  ML  G+ P   TY ++L GL +      A E++
Sbjct: 572 DAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELY 612



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 7/370 (1%)

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDEL---RI 254
            C+  ++G+ + +L  +R+        +V++   ++ GFC   R EEA ++L  +   ++
Sbjct: 140 LCDAKRVGEAMGVL--LRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQV 197

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R C P+ ++Y  V   F   G V +   +       G+ P    Y   I GL   + +  
Sbjct: 198 RSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDR 257

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSK 373
           A+ + + ++      +      LI    SI     +V     M   G  P   T   L  
Sbjct: 258 AEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLD 317

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK+ K  E  +++  +       D+  Y +++    T G L E +  +  M   G+ P
Sbjct: 318 YLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISP 377

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +   +N +  A  ++ ++  A  ++++M   G S N+  Y  LI    ++G ++ A   F
Sbjct: 378 NHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKF 437

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           + M+ +GVAP+   +TSL+ GLC     + A E+F + VN  +       +T M +LC  
Sbjct: 438 NQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTE 497

Query: 554 GHFLVATKLL 563
           G  + A +L+
Sbjct: 498 GRVMKAQRLI 507



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 184/416 (44%), Gaps = 23/416 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+++    ++G +D A  +F +M+ +G+  + + + + I   C+     QV+   + V +
Sbjct: 208 NTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCK----AQVVDRAEGVFQ 263

Query: 218 R--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +  +  +    V    +IHG+    + +E  ++L E+     +PD   Y ++ +     G
Sbjct: 264 QMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKG 323

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              E   +     + G+ P  + Y   + G   +  + E     +++V    + +  + N
Sbjct: 324 KCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFN 383

Query: 336 ---------ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                    A+IG    I        FN M ++G  P +   + L   LCK  + D+   
Sbjct: 384 IVFCAFAKKAMIGEAMDI--------FNKMRQQGLSPNVVNYATLIDALCKLGRVDDAEL 435

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
            +  +       ++  +  +V  LCT  +  +A  +  EM  +G+ P+V F+N++M   C
Sbjct: 436 KFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLC 495

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
            E  +  A++L D M   G   ++ +YN LI     VG+ + A +L   ML  G+ P+  
Sbjct: 496 TEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNEC 555

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           TY +LL G C++  +  A+ VF + +++ +       +T +  L +   F  A +L
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKEL 611



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 199/444 (44%), Gaps = 16/444 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  IL   +    ++ + S L  +  N I+ +  ++  +  +  +     +A  +FN+++
Sbjct: 347 YGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMR 406

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              + + P + N  +L+  L   G +D+A   F++M + GV  + + F   ++  C   K
Sbjct: 407 Q--QGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDK 464

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
             +   +  E+    N  I+ +V+    I+   C   RV +A +++D +     +PD I+
Sbjct: 465 WEKAGELFFEMV---NQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIIS 521

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +     L+G   E   +L     +G+ P    Y   + G   + RI +A  + + ++
Sbjct: 522 YNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEML 581

Query: 324 SGKFT----IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           S   T      + +L+ L  +    + +   ++ N MI  G+  ++ T + +   L K N
Sbjct: 582 SNGITPVVVTYNTILHGLFKTRRFSEAKE--LYLN-MITSGKQWSIYTYNIILNGLSKNN 638

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE +++++ L + D   D+ ++N+M+  L   GR  +A  +   +   GL PDV+ Y 
Sbjct: 639 CVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYR 698

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            + E    E  L     ++ +M  SGC+ N    N L+ +    G+I  A      + EK
Sbjct: 699 LIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEK 758

Query: 500 GVAPDATTYTSLLEGLCQETNLQA 523
             + +A+T TS+L  L      QA
Sbjct: 759 NFSLEAST-TSMLISLFSREEHQA 781



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 171/406 (42%), Gaps = 13/406 (3%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I N +    A    I  A+ +F++M  +G+  + + +   I   C   KLG+V    D+ 
Sbjct: 381 IFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALC---KLGRV----DDA 433

Query: 216 RKRENSMINGSV---IAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
             + N MIN  V   I V   +++G C   + E+A ++  E+  +   P+ + +  +   
Sbjct: 434 ELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCN 493

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
               G V + + ++    ++G  P    Y   I G  +  +  EA +L ++++S     +
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPN 553

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
           +   N L+ G         A   F  M+  G  P + T + +   L K  +  E  E+Y 
Sbjct: 554 ECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYL 613

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            +  +     + +YN++++ L  +  + EA  + Q +  K L  D+  +N ++ A  ++ 
Sbjct: 614 NMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDG 673

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
               A  L+  + A+G   ++ TY ++     E G +E    +F  M + G AP++    
Sbjct: 674 RKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLN 733

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            L+  L    ++  A    +K    +  L  S  S  +    R  H
Sbjct: 734 FLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEH 779


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 210/468 (44%), Gaps = 22/468 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVN----KITLDSSVYRFIIPSLIQGKNTQKAFSV 141
           S++++L +   +R+ +  D+    +       +I  +   Y  ++ SL    +  +A ++
Sbjct: 121 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTL 180

Query: 142 FNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           F+ ++     + P+    ++L+  LA    +D+AL + DEM    V+   + +   +   
Sbjct: 181 FDSLRR--RQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGC 238

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +  +  +V+ + D++ K   +  N +   V++  G CK  R +E  +V + +     +P
Sbjct: 239 FKAGEFEKVMRVWDKLVKDPGARPNLATYNVML-DGLCKFGRFKEVGEVWERMVANNLQP 297

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y I+       G V     V  +  K G+      Y   + G     R+ EA +  
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 320 EVIVSGKFTIDDDV--LNALI-GSVSSIDPRSAIVFFNFMIEK--GRVPTLSTLSNLSKN 374
           +   S  F    ++   N +I G   S     AI  ++ ++EK    +P   T   L   
Sbjct: 358 D---SAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD-LLEKDVACIPDTVTFGTLIHG 413

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC+   +++   +++    +    D+ SY+ M++ LC  GRL +A  V ++M + G  P+
Sbjct: 414 LCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPN 473

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              YN+L+   C+      A +++ +M  +GCS  + TYN LI    +  + + A  +  
Sbjct: 474 SHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAR 533

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVML 538
            M+E G  PD TTY SL+ GL  +  +  A  ++     K +  DVM+
Sbjct: 534 EMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMM 581



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/522 (21%), Positives = 212/522 (40%), Gaps = 59/522 (11%)

Query: 39  HQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN----------WAS--QQPNFTHSPLS 86
           H L L D +  S V     P ++ +++L  G F           W    + P    +  +
Sbjct: 211 HALDLLDEMPRSRV----QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLAT 266

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ +L  L    +   +  V +++  N +  D   Y  +I  L +  +   A  V++E+ 
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                I   + NSL+      G +  A K +D     G+  +   + + I    ++  + 
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVD 385

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + + + D + K + + I  +V    +IHG C+     +AF + +E R+   + D  +Y  
Sbjct: 386 EAIELWDLLEK-DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +      +G + +   V +K  K G  P ++ Y   I G       C+     +      
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGF------CQVYRTSD------ 492

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                                 A+  ++ M + G  PT+ T + L   LCK  K  E   
Sbjct: 493 ----------------------AVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASS 530

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V + +  N +  D+ +Y  ++  L +  ++ +A  + +++  KGL  DV  +N L+   C
Sbjct: 531 VAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590

Query: 447 REDLLRPAKKLWDQMF-ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
               +  A  ++  M     C  NL TYN L+    E G I+ A  L+ ++ E G+ PD 
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +Y + ++GLC    +    ++       D +L+R I+ T +
Sbjct: 651 ISYNTRIKGLCSCDRIHEGIQLL------DEVLSRGIIPTVI 686



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/462 (21%), Positives = 204/462 (44%), Gaps = 22/462 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L+   +++    +L ++  +++  D   Y  ++    +    +K   V+++
Sbjct: 194 ITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDK 253

Query: 145 VKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +    +D G  P +   N +L  L   G      ++++ M    ++   I +G+ I   C
Sbjct: 254 L---VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC 310

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
            +  +     +  E+ K    ++  + +   ++ GFC+  RV+EA+K  D       + +
Sbjct: 311 RSGDVDGAARVYSEIIK--TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-N 367

Query: 261 FIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL- 318
              Y I+ +     G V E  E+    ++ +   P T  +   I GL       +A  + 
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 319 GEVIVSGKFTID----DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            E  VSGK  +D      ++N L      +D   A+  +  M + G  P     + L   
Sbjct: 428 EEARVSGK-QLDVFSYSSMINGLCNVGRLVD---AVKVYEKMDKDGCKPNSHIYNALISG 483

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            C+  ++ + V +Y  ++ N     + +YN ++  LC + + +EA  V +EM   G  PD
Sbjct: 484 FCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           ++ Y SL+     +  +  A  +W Q+   G   ++  +NILI      G+++ AL +F 
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 495 NMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +M E K   P+  TY +L++GL +   +  A  ++  S+  D
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWT-SITED 644



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 178/417 (42%), Gaps = 16/417 (3%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N     ++Y  ++  L  S  ++    V  ++    + +D+++Y  ++    Q    Q+A
Sbjct: 294 NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEA 353

Query: 139 FSVFNEVKF-NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFI 196
           +  ++   F    ++     N ++  L   G +D A++++D +         T+ FG  I
Sbjct: 354 WKFWDSAGFAGLRNL--RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDEL 252
              C+N    +  ++ +E R      ++G  + V     +I+G C   R+ +A KV +++
Sbjct: 412 HGLCQNGFANKAFTIFEEAR------VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM 465

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
               CKP+   Y  +   F  +    +   +  K    G +P    Y   I GL    + 
Sbjct: 466 DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKY 525

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            EA  +   +V   FT D     +LI G  S      A+  +  ++ KG    +   + L
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNIL 585

Query: 372 SKNLCKRNKSDELVEVYKVLS-ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
              LC   K DE + V+  +    +   ++ +YN ++  L  +G + +A  +   +   G
Sbjct: 586 IHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDG 645

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           L+PD+  YN+ ++  C  D +    +L D++ + G    + T+NIL+    + G I+
Sbjct: 646 LEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/462 (21%), Positives = 198/462 (42%), Gaps = 34/462 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSH----RGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           N+LL          +A   F  +SH    R +  +   + + +   C    L + +++ D
Sbjct: 123 NALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFD 182

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
            +R+R+  +    +    ++ G  K  R++ A  +LDE+     +PD + Y        L
Sbjct: 183 SLRRRQ--VAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYN------AL 234

Query: 274 MGSVF---EREVVLKKKRKL----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +G  F   E E V++   KL    G  P    Y   + GL    R  E  E+ E +V+  
Sbjct: 235 LGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANN 294

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D      LI G   S D   A   ++ +I+ G V   +  ++L K  C+  +   + 
Sbjct: 295 LQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR---VQ 351

Query: 386 EVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLM 442
           E +K   +  +    ++ +YN+M+  L  SG + EA  +   +++     PD   + +L+
Sbjct: 352 EAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C+      A  ++++   SG   ++ +Y+ +I+    VG +  A++++  M + G  
Sbjct: 412 HGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK 471

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P++  Y +L+ G CQ      A  +++K  ++         +T +  LC+   +  A+ +
Sbjct: 472 PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSV 531

Query: 563 LR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWI 599
            R     G + D+    S   L++ L   ++++ A+   K I
Sbjct: 532 AREMVENGFTPDITTYGS---LIRGLFSDKKIDDALSIWKQI 570


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/526 (23%), Positives = 233/526 (44%), Gaps = 47/526 (8%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS-VYRFIIPSLIQGKNT 135
           +P+     L+  +  K+L L+      +S+L+++K  K+ + S   Y  +I + ++  N 
Sbjct: 265 EPDSLLYSLAVQACCKTLDLA----MANSLLREMKEKKLCVPSQETYTSVILASVKQGNM 320

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
             A  + +E+  +   +      SL+     +  + +AL +FD+M   G   +++ F V 
Sbjct: 321 DDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVL 380

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
           I  F +N   G++   L+  +K E   +  SV  V  II G+ KG++ EEA K+ DE   
Sbjct: 381 IEWFRKN---GEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFE 437

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-------- 306
                 F+   I++   K  G   E   +L K    G+ P    Y   +LG         
Sbjct: 438 TGLANVFVCNTILSWLCK-QGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDL 496

Query: 307 -------IVERRICEAKELGEVIVSGKFTIDDD-----VLNALIGSVSSIDPRSAIVFFN 354
                  I+E+ +        +++ G F   D+     V+N +  S   ++        N
Sbjct: 497 ARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIIN 556

Query: 355 FMIEKGRVPTL-STLSNL--SKNLC--------------KRNKSDELVEVYKVLSANDYF 397
            + + G+       L+N+   K LC              K  + D  V  Y+ +  N   
Sbjct: 557 GLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGIS 616

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y  +++ LC + R+ +A  +  EMK KG+  D+  Y +L++  C+   +  A  L
Sbjct: 617 PNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASAL 676

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + ++   G + +   YN LIS F  +G +  AL L+  ML+ G+  D  TYT+L++GL +
Sbjct: 677 FSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLK 736

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + NL  A E++ +     ++    I +  +  L ++G F+   K+ 
Sbjct: 737 DGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMF 782



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 194/450 (43%), Gaps = 42/450 (9%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           K+  + L  SV+    II   ++G+  ++A  +F+E  F        +CN++L+ L   G
Sbjct: 399 KMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE-SFETGLANVFVCNTILSWLCKQG 457

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC--ENAKLGQVL--SMLDEVRKRENS--- 221
             D A ++  +M  RG+  + + +   +   C  +N  L +++  ++L++  K  N    
Sbjct: 458 KTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYS 517

Query: 222 -MING-------------------------SVIAVLIIHGFCKGKRVEEAFKVLDEL--R 253
            +I+G                          V+   II+G CK  +  +A ++L  +   
Sbjct: 518 ILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEE 577

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            R C    ++Y  + + F   G +       ++    G++P    Y   + GL    R+ 
Sbjct: 578 KRLCV-SCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMD 636

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           +A E+ + + +    +D     ALI G     +  SA   F+ ++E+G  P+    ++L 
Sbjct: 637 QALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLI 696

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
                       +++YK +  +    D+ +Y  ++  L   G L  A  +  EM+  GL 
Sbjct: 697 SGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLV 756

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD   Y  ++    ++       K++++M  +  + N+  YN +I+     G ++ A RL
Sbjct: 757 PDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL 816

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              ML+KG+ PD  T+  L+ G  Q  NLQ
Sbjct: 817 HDEMLDKGILPDGATFDILVSG--QVGNLQ 844



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 32/287 (11%)

Query: 299 YREFILGLIVERR-ICEAKELGEVIVSGKFTID-DDVLNALI--GSVSSIDPRSAIVFFN 354
           Y    L  +V+R  + EAKEL   +V+    +D D+V   L+   S+    P  A+   +
Sbjct: 200 YVNRTLSALVQRNSLTEAKELYSRMVA--IGVDGDNVTTQLLMRASLREEKPAEALEVLS 257

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM----------ESYN 404
             IE+G  P  S L +L+   C         +   +  AN    +M          E+Y 
Sbjct: 258 RAIERGAEPD-SLLYSLAVQAC--------CKTLDLAMANSLLREMKEKKLCVPSQETYT 308

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++      G + +A  +  EM   G+  +V    SL+   C+ + L  A  L+D+M   
Sbjct: 309 SVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKE 368

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G S N  T+++LI  F + GE+E AL  +  M   G+ P      ++++G  +    + A
Sbjct: 369 GPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEA 428

Query: 525 FEVFNKSVN---HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            ++F++S      +V +  +ILS     LC++G    AT+LL  + S
Sbjct: 429 LKLFDESFETGLANVFVCNTILSW----LCKQGKTDEATELLSKMES 471



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS--AIVFFNFMIEKGRVP 363
           ++V + +  AK  G       F ++    N L+ + S  D ++  A+   N M+E   +P
Sbjct: 145 VLVSKLVDSAKSFG-------FEVNSRAFNYLLNAYSK-DRQTDHAVDIVNQMLELDVIP 196

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
               ++     L +RN   E  E+Y  + A     D  +  +++       +  EA  V+
Sbjct: 197 FFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVL 256

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSE 482
                +G +PD   Y+  ++ACC+   L  A  L  +M     C  + +TY  +I    +
Sbjct: 257 SRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVK 316

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            G ++ A+RL   ML  G++ +    TSL+ G C+  +L +A  +F+K
Sbjct: 317 QGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDK 364



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++  L  + +++    +  ++K   + LD   Y  +I    +  N + A ++F+E
Sbjct: 620 ITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSE 679

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +    I NSL++   + G +  AL ++ +M   G+      +   I    ++  
Sbjct: 680 LLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGN 739

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L     +  E++     ++   +I  +I++G  K  +  +  K+ +E++     P+ + Y
Sbjct: 740 LILASELYTEMQAV--GLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIY 797

Query: 265 RIV 267
             V
Sbjct: 798 NAV 800


>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
 gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
          Length = 448

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 19/372 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  M   M   G +   +  G+ + KFCE  ++G+V  +  E+        NG  + 
Sbjct: 26  VDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELES------NGVAVG 79

Query: 230 VLIIHG-----FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +L  +       C G   +  FK  D        P  +AY+ + +     G   E   V+
Sbjct: 80  MLAYNAILKALMCSGD-FDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVV 138

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---V 341
            +  K  V P    Y   I  L    R  +A ++ +++V  +   + DV  +L+ +    
Sbjct: 139 GEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRT 197

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +D   A   F  MI++G  P+ ST   L + LC   +S    +++  + +  +  D  
Sbjct: 198 RKLD--GAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDEN 255

Query: 402 SYNVMVSFLCTSGRLREAYGVIQE-MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           +Y  ++   C +GR+ EA  + +E ++ +    D   YN L+E  CR   +  A ++   
Sbjct: 256 TYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAG 315

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC   L+TYN LI  F +  E++ AL+LF  M EKG +P+   Y++ ++GLC+   
Sbjct: 316 MVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGK 375

Query: 521 LQAAFEVFNKSV 532
           +  A E F +SV
Sbjct: 376 INEAHEFFQQSV 387



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 48/351 (13%)

Query: 330 DDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           D D  N L+     +SS+D   A++  + M+ +G  P + T   L    C+  +  E+ E
Sbjct: 9   DRDSYNLLVRGLTKLSSVDQARAML--STMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCE 66

Query: 387 VYKVLSANDYFTDMESYN-----------------------------------VMVSFLC 411
           +++ L +N     M +YN                                    M+  L 
Sbjct: 67  LFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLI 126

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G+ REA  V+ EM +K + PD   Y +L+   C+ +    A K++D M       N+ 
Sbjct: 127 KTGKTREASEVVGEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVD 185

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            Y  L++      +++GA RLF  M+++G  P A+TY  LL  LC       A+++ +  
Sbjct: 186 VYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSM 245

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRG-LSSDLGHSDSHV--ILLKSLADARE 588
            +   +   +  ++ +   C  G    A  L +  L  +    D+ +  +L++ L  A +
Sbjct: 246 RSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASK 305

Query: 589 VEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
           VE A+E    + +    PT LQ  +A L      ++  +  L L  A++EK
Sbjct: 306 VEEALEVTAGMVDKGCIPT-LQTYNA-LIMGFFKANEVDKALQLFRAMEEK 354



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 176/438 (40%), Gaps = 29/438 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +++ L+    ++   ++L  +       D      ++    + K   +   +F E+
Sbjct: 12  SYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQEL 71

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + N   +G    N++L  L   G  D   K  D     G     + +   +    +  K 
Sbjct: 72  ESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKT 131

Query: 206 GQVLSMLDEVRKRE--NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            +   ++ E+ K+   + M   ++I+VL     CK  R ++A KV D +  +E  P+   
Sbjct: 132 REASEVVGEMIKKSVPDGMTYTALISVL-----CKHNRADDAMKVFDIMVEKEIVPNVDV 186

Query: 264 Y----------RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           Y          R +   ++L   + +R          G  P  + Y   +  L    R  
Sbjct: 187 YTSLLAAHCRTRKLDGAYRLFVEMIQR----------GYGPSASTYGLLLRCLCNGGRSY 236

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN-L 371
            A ++   + S     D++   +LI G   +     A V F  ++E  +    + + N L
Sbjct: 237 LAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVL 296

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            + LC+ +K +E +EV   +        +++YN ++     +  + +A  + + M+ KG 
Sbjct: 297 IEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGF 356

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+   Y++ ++  C+   +  A + + Q    GC  +  TYN LI        ++ A R
Sbjct: 357 SPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHR 416

Query: 492 LFHNMLEKGVAPDATTYT 509
           L+  M E+G   D +  T
Sbjct: 417 LYREMGERGYIADRSLRT 434



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 45/108 (41%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G+ PD   YN L+    +   +  A+ +   M   G   ++ T  +L+ KF E+  
Sbjct: 1   MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           +     LF  +   GVA     Y ++L+ L    +    F+  + +V 
Sbjct: 61  VGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVG 108


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 184/425 (43%), Gaps = 49/425 (11%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A  +FDE+  RG   S  G    +     ++    V       R   + +        
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER------EVVL 284
           ++I   C   R++  F  L  +  +  + D IA+  +     L G   ++      ++VL
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPL-----LKGLCADKRTSDAMDIVL 150

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN---ALIGSV 341
           ++  +LG  P    Y   + GL  E R  EA EL +++         DV++    + G  
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D   A   ++ M+++G +P + T S++   LCK    D+ +EV   +  N    +  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V   C+SG+ +EA G +++M   G++PDV  YNSLM+  C+      A+K++D M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 462 FASGCSGNLKTY-----------------------------------NILISKFSEVGEI 486
              G    + TY                                   +ILI  +++ G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ +F  M ++G+ PD  TY +++  LC+   ++ A   F + ++  +     + ++ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL 450

Query: 547 MISLC 551
           + SLC
Sbjct: 451 IHSLC 455



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 218/527 (41%), Gaps = 42/527 (7%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI----------------------- 338
            + G   +  + E   L +++V      +  V + LI                       
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 339 --------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   G+V  I  +S     A+ +F  MI++   P     ++L  +LC  +K D+  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+   +       D   +N ++   C  GR+ E+  +   M R G+ PD+  Y++L++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A KL   M + G   +  TYN LI+ + ++  +E AL LF  M   GV+PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            TY  +L+GL Q     AA E++         L  S  +  +  LC+
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 13/455 (2%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVF-----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
            Y  II +L + +   KA  V      N V  NC        NS++    S G    A+ 
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY-----NSIVHGYCSSGQPKEAIG 290

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
              +M   GVE   + +   +   C+N +  +   M D + KR   +         ++ G
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR--GLKPEITTYGTLLQG 348

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +     + E   +LD +      P+   + I+   +   G V +  +V  K R+ G+ P 
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
           T  Y   I  L    R+ +A    E ++  + +  + V N+LI S+   D    A     
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G        +++  + CK  +  E  +++ ++       D+ +Y+ ++   C +G
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA  ++  M   G+ PD   YN+L+   C+   +  A  L+ +M +SG S ++ TYN
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I++    +      A  L+  + E G   + +TY  +L GLC+      A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           D+ L     +  + +L + G    A  L   LS++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 198/473 (41%), Gaps = 44/473 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+ +L  ++ ++    VL  +  N +  +   Y  I+         ++A      
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK- 293

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K + + + P++   NSL+  L  +G    A KMFD M+ RG++     +G  +  +   
Sbjct: 294 -KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++  +LD +  R     N  V ++LI   + K  +V++A  V  ++R +   PD +
Sbjct: 353 GALVEMHGLLD-LMVRNGIHPNHYVFSILIC-AYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  V       G V +     ++     ++P    Y   I  L +  +  +AKEL   +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     +D    N++I S    + R   +   F+ M+  G  P + T S L    C   K
Sbjct: 471 LDRGICLDTIFFNSIIDSHCK-EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE  ++   + +     D  +YN +++  C   R+ +A  + +EM+  G+ PD+  YN 
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 441 LMEACCREDLLRPAKKLWDQMFASG---------------CSGNL--------------- 470
           +++   +      AK+L+  +  SG               C  NL               
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 471 -----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                +T+NI+I    +VG  + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 198/462 (42%), Gaps = 19/462 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  +I +  +     +A  VF+  
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFS-- 398

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   + + P+     +++ +L   G +++A++ F++M    +    I +   I   C   
Sbjct: 399 KMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 204 KLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           K  +    +L MLD     +    N       II   CK  RV E+ K+ D +     KP
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNS------IIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L 
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + S   + D    N ++ G   +    +A   +  + E G    LST + +   LCK 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N +DE + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           + + E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 499 KGVAPDATTYTSLLE----GLCQETNLQAAFEVFNKSVNHDV 536
           K  + +A+T +  L+    G  QE +      +F+  VN +V
Sbjct: 753 KHFSLEASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEV 794



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y+S++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/483 (22%), Positives = 210/483 (43%), Gaps = 48/483 (9%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI------QGKNTQKAFS 140
           Y S++ + ++ R +    S ++++K   + +    Y  ++          Q  N  +A S
Sbjct: 340 YTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAES 399

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +  E++    D   +I ++++      G  +  L +F  +   G   S I +G  I  + 
Sbjct: 400 LVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMY- 458

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K+G+V   L+  +  E++ I  ++    ++I+GF K K    AF V +++     KP
Sbjct: 459 --TKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKP 516

Query: 260 DFIAYRIVAEEFKLMGSV----------------------------FEREVVLKKK---- 287
           D + Y  + + F  MG++                            F R   +++     
Sbjct: 517 DVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIF 576

Query: 288 ---RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
              R+ G  P  + +   +LGL+ +R++ +A E+ + +     + D+     ++   +++
Sbjct: 577 DMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAAL 636

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D   A  +F  +  +G    + T   L K  CK  +    + V + +SA +   +   Y
Sbjct: 637 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVY 696

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-DLLRPAKKLWDQMF 462
           N+++      G + EA  ++Q+MK++G+ PD+  Y S + ACC+  D+LR  K +  +M 
Sbjct: 697 NILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTI-QEME 755

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G   N+KTY  LI  ++     E ALR F  M   G+ PD   Y  L+  L     + 
Sbjct: 756 ALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVA 815

Query: 523 AAF 525
            A+
Sbjct: 816 EAY 818



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/456 (20%), Positives = 193/456 (42%), Gaps = 17/456 (3%)

Query: 131 QGKNTQKAFSVFNEVKFNCE-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           Q +N Q   S F  +K     + G      ++   A  G +  A + F+ M  RG+  S+
Sbjct: 283 QPENWQAVVSAFERIKKPARREFG-----LMVGYYARRGDMHRARQTFESMRVRGIYPSS 337

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKV 248
             +   I  +     + + LS    VRK +   +  S++   +++ GF K    +++  +
Sbjct: 338 HVYTSLIHAYAVGRDMEEALSC---VRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNM 394

Query: 249 -LDELRIRECKPDFI-----AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
              E  +RE + + I      Y  +   + ++G+  +  +V K+ ++ G AP    Y   
Sbjct: 395 DRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCL 454

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           I       ++ +A E+ +++ S     +    + LI G +   D  +A   F  +I+ G 
Sbjct: 455 INMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGL 514

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P +   +N+ K  C     D  + + K +    +     ++  ++     +G +R A  
Sbjct: 515 KPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALE 574

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +   M+R G  P V  +N+L+     +  +  A ++ D+M  +G S +  TY  +++ ++
Sbjct: 575 IFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYA 634

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
            +G+   A   F  +  +G+  D  TY +LL+  C+   +Q+A  V  +    ++     
Sbjct: 635 ALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTF 694

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
           + +  +    RRG    A  L++ +  +    D H 
Sbjct: 695 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHT 730



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 19/271 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++++++  L   RQ+     +L ++ +  ++ D   Y  I+       +T KAF  F ++
Sbjct: 590 TFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKL 649

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI--WKFCENA 203
           +    ++      +LL      G + +AL +  EMS + +  +T  + + I  W     A
Sbjct: 650 RNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGW-----A 704

Query: 204 KLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           + G V    D +++ +   +   +      I+  CK   +  A K + E+     KP+  
Sbjct: 705 RRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVK 764

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKELGEV 321
            Y  +   +    S+ E+ +   ++ KL G+ P    Y   +  L+    + EA      
Sbjct: 765 TYTTLIHGWAC-ASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEA-----Y 818

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           I SG  +I       +I S  ++D  +A+ +
Sbjct: 819 IYSGILSI----CREMIESELTVDMGTAVYW 845


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 203/484 (41%), Gaps = 48/484 (9%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  I+   S +    A D    + K    TL++S+Y  II +  Q  N ++A ++ 
Sbjct: 379 SLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 438

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIW 197
            E++    D    I ++++     DGY         L +F  +   G   + + +G  I 
Sbjct: 439 REMEEEGIDAPIAIYHTMM-----DGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLIN 493

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + +  K+ + L  +  V K E    N    + ++I+GF K K    AF V +++     
Sbjct: 494 LYTKVGKISKALE-VSRVMKEEGVKHNLKTYS-MMINGFVKLKDWANAFAVFEDMVKEGM 551

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--------------------------- 290
           KPD I Y  +   F  MG++      +K+ +KL                           
Sbjct: 552 KPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLE 611

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSV 341
                   G  P  + +   I GL+ +R++ +A E L E+ ++G    +      + G  
Sbjct: 612 VFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 671

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S  D   A  +F  +  +G    + T   L K  CK  +    + V K +SA +   +  
Sbjct: 672 SVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 731

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN+++      G + EA  +IQ+MK++G+ PD+  Y S + AC +   +  A +  ++M
Sbjct: 732 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEM 791

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            A G   N+KTY  LI  ++     E AL  +  M   G+ PD   Y  LL  L    ++
Sbjct: 792 EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASI 851

Query: 522 QAAF 525
             A+
Sbjct: 852 AEAY 855



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/423 (20%), Positives = 174/423 (41%), Gaps = 3/423 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I  SL+   A    ++ AL    +M   G+E S + + V +  F +           DE 
Sbjct: 347 IYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEA 406

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            KR +  +N S+    II+  C+   +E A  ++ E+           Y  + + + ++ 
Sbjct: 407 -KRIHKTLNASIYGK-IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVA 464

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  +V K+ ++ G  P    Y   I       +I +A E+  V+       +    +
Sbjct: 465 DEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYS 524

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I G V   D  +A   F  M+++G  P +   +N+    C     D  ++  K +   
Sbjct: 525 MMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKL 584

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  +++    SG +R +  V   M+R G  P V  +N+L+     +  +  A
Sbjct: 585 RHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKA 644

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ VG+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 645 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKA 704

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 705 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 764

Query: 575 SHV 577
            H 
Sbjct: 765 IHT 767



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 68/175 (38%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F  M  +G  PT    ++L          +E +   + +        + +Y+V+V     
Sbjct: 333 FERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 392

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
           +G    A     E KR     + S Y  ++ A C+   +  A+ L  +M   G    +  
Sbjct: 393 AGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAI 452

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           Y+ ++  ++ V + +  L +F  + E G  P   TY  L+    +   +  A EV
Sbjct: 453 YHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEV 507



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V FY        R D+ R A++ +++M A G +   + Y  LI  ++   ++E AL    
Sbjct: 317 VKFYGR------RGDMHR-ARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVR 369

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M E+G+     TY+ ++ G  +  N +AA   F+++      L  SI    + + C+  
Sbjct: 370 KMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTC 429

Query: 555 HFLVATKLLRGLSSD 569
           +   A  L+R +  +
Sbjct: 430 NMERAEALVREMEEE 444



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 59/316 (18%), Positives = 122/316 (38%), Gaps = 39/316 (12%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++++++  L   RQ+     +L ++ +  ++ +   Y  I+       +T KAF  F  +
Sbjct: 627 TFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRL 686

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI--WKFCENA 203
           +    ++      +LL      G + +AL +  EMS R +  ++  + + I  W     A
Sbjct: 687 QNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGW-----A 741

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKPDFI 262
           + G V    D +++ +   +   +         C K   +  A + ++E+     KP+  
Sbjct: 742 RRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIK 801

Query: 263 AYRIVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
            Y  + + +    S+ E+ +   ++ + +G+ P    Y   +  L+    I EA      
Sbjct: 802 TYTTLIKGW-ARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEA-----Y 855

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK-RNK 380
           I SG  TI  +                       M+E G +  + T  + S+ LCK    
Sbjct: 856 IYSGVMTICKE-----------------------MVEAGLIVDMGTAVHWSRCLCKIEGS 892

Query: 381 SDELVEVYKVLSANDY 396
             EL E  +     D+
Sbjct: 893 GGELTETLQKTFPPDW 908


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/453 (20%), Positives = 200/453 (44%), Gaps = 12/453 (2%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +++    L R++     + ++   + +      Y  +I    +    +KA+ +  +++ +
Sbjct: 287 TLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDH 346

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                    N ++  L +D    +A+ +F EM+  G+      + + I   C+  K+ + 
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREA 405

Query: 209 LSMLDEVRKRENSMINGSVIAVLIIHG----FCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L++ +++ +       G    ++  H     +C    ++EA K+  E+  +   P+ + Y
Sbjct: 406 LNLWEKMNE------TGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +      +  +   +L + ++ GV+     Y   I GL V  R+CE  E+ +   +
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
             F       N++I G + +    SA   +  M  KG  P + T ++     CK +  D 
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDL 579

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            +++   +       D+ +YN ++   C  G +  A  V+  M + GL P++S YNS + 
Sbjct: 580 ALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
                 ++  A + +++M   G   +  TY  LI  FS+ G +  AL+L+  M+ KG  P
Sbjct: 640 GYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           D  T+T+L  GLC+  ++  A ++ ++    D+
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDI 732



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 207/498 (41%), Gaps = 25/498 (5%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  RK   + E+TL     RD L P+ V   +     T   +    +    Q  +    P
Sbjct: 296 REVRKALDIFEETL-----RDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLP 350

Query: 85  LS--YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
            +  ++ ++K L   +      S+ K++  + I  D+  Y  +I  L Q +  ++A +++
Sbjct: 351 STNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREALNLW 409

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
              K N   + P I   +SLL     +G +D A+K++ EM  +G   + + +   +    
Sbjct: 410 E--KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHI 467

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             A   +  ++L E++  +N +         +I+G C   RV E  ++L         P 
Sbjct: 468 NKAAFDKAYALLAEMK--QNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPT 525

Query: 261 FIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-- 315
            + Y  +   F    +MGS F    V ++    G+ P    Y  FI G   +   C+   
Sbjct: 526 AMTYNSIINGFIKAGMMGSAF---AVYQQMCAKGIPPNIVTYTSFIDGY-CKTSCCDLAL 581

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           K L +V   G    D    N+LI G     +   A+     M++ G +P +S  ++    
Sbjct: 582 KMLNDVRCKG-LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                  +E +  Y+ +       D  +Y  ++      G +  A  +  EM  KG  PD
Sbjct: 641 YKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
              + +L    CR   +  A+KL D+M       N+  YN+LI+ +   G+++ A RL  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 495 NMLEKGVAPDATTYTSLL 512
            MLE+ + PD TTY  L+
Sbjct: 761 EMLERKIMPDDTTYDILV 778



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/475 (20%), Positives = 196/475 (41%), Gaps = 55/475 (11%)

Query: 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           LD+ ++  ++ +  +      A  +F+E+  +  +    +C+  +A L      + AL +
Sbjct: 175 LDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLV 234

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
             +M   G       F   +    +  ++ + L + DE+      M    V+A  ++HG+
Sbjct: 235 LRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKM--SVVLATTLMHGY 292

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           C  + V +A  + +E       P  + Y ++       G   +   + ++ R  G+ P T
Sbjct: 293 CLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPST 352

Query: 297 NDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
           N++   I GL+ ++   +A    KE+ +  +   FT +  +L   +     I  R A+  
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYN--ILIHWLCQRRKI--REALNL 408

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--------------------- 391
           +  M E G  P + T  +L    C     DE V++Y  +                     
Sbjct: 409 WEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 392 -------------------SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
                              S NDY     +YN +++ LC  GR+ E   +++  + +G  
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDY-----TYNTLINGLCVVGRVCEVGEMLKRFETEGFV 523

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P    YNS++    +  ++  A  ++ QM A G   N+ TY   I  + +    + AL++
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            +++  KG+ PD   Y SL+ G CQE N+  A +V    +   ++   S+ ++F+
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 183/440 (41%), Gaps = 53/440 (12%)

Query: 167 DGYIDNALKMFDEMSHRGVE----FSTIGF----------------------GVFIWKFC 200
           +G  D+A+++FDEM    +E      ++                        G   W F 
Sbjct: 190 EGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFT 249

Query: 201 ENA---------KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            N+         ++ + L + DE+      M    V+A  ++HG+C  + V +A  + +E
Sbjct: 250 FNSVVDVLVKGGRMEEALHIKDELLATGKKM--SVVLATTLMHGYCLQREVRKALDIFEE 307

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
                  P  + Y ++       G   +   + ++ R  G+ P TN++   I GL+ ++ 
Sbjct: 308 TLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKL 367

Query: 312 ICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
             +A    KE+ +  +   FT   ++L   +     I  R A+  +  M E G  P + T
Sbjct: 368 WKDAVSLFKEMADSGIPDAFTY--NILIHWLCQRRKI--REALNLWEKMNETGVKPYIVT 423

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
             +L    C     DE V++Y  +    +  ++ +Y  ++          +AY ++ EMK
Sbjct: 424 YHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMK 483

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           + G+  +   YN+L+   C    +    ++  +    G      TYN +I+ F + G + 
Sbjct: 484 QNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMG 543

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSIL 543
            A  ++  M  KG+ P+  TYTS ++G C+ +    A ++ N    K +  D+    S++
Sbjct: 544 SAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLI 603

Query: 544 STFMISLCRRGHFLVATKLL 563
             F    C+ G+   A ++L
Sbjct: 604 YGF----CQEGNMSHALQVL 619



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 108/532 (20%), Positives = 206/532 (38%), Gaps = 80/532 (15%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICNSLL 161
           +  ++  ++I  D  V    I SL + ++  +A  V  ++    +D G        NS++
Sbjct: 199 LFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKM----QDAGFVPWDFTFNSVV 254

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
            VL   G ++ AL + DE+   G + S +     +  +C   ++ + L + +E  +  + 
Sbjct: 255 DVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR--DG 312

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELR---------------------------- 253
           ++   V   ++I G  +    E+A+++  ++R                            
Sbjct: 313 LVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAV 372

Query: 254 --IRECK----PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
              +E      PD   Y I+         + E   + +K  + GV P    Y   +L   
Sbjct: 373 SLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYC 432

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
           V   + EA +L   +    FT +      L+ G ++      A      M + G      
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + L   LC   +  E+ E+ K      +     +YN +++    +G +  A+ V Q+M
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 427 KRK-----------------------------------GLDPDVSFYNSLMEACCREDLL 451
             K                                   GL PD++ YNSL+   C+E  +
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNM 612

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A ++   M   G   N+  YN  I+ +  +  +E ALR +  M+++G+  D  TYT+L
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL 672

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           ++G  ++ N+  A +++++ V    +      +     LCR G    A KLL
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLL 724



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           ++A ++ DE+   E +PD     +       +       +VL+K +  G  P    +   
Sbjct: 194 DDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSV 253

Query: 303 ILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
           +  L+   R+ EA  +  E++ +GK          + G     + R A+  F   +  G 
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGL 313

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           VPT  T + L +   +    ++  E+ + +  +        +N+++  L      ++A  
Sbjct: 314 VPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           + +EM   G+ PD   YN L+   C+   +R A  LW++M  +G    + TY+ L+  + 
Sbjct: 374 LFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYC 432

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G ++ A++L+  M  KG  P+  TYT+L++G   +     A+ +  +   + V     
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 542 ILSTFMISLCRRGHFLVATKLLR 564
             +T +  LC  G      ++L+
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLK 515



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 134/354 (37%), Gaps = 56/354 (15%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLS 95
           L   +  +   P ++T+ +L  G  N A+           +Q   + +  +Y++++  L 
Sbjct: 443 LYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLC 502

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +  ++  +  +LK+ +       +  Y  II   I+      AF+V+ ++    + I P 
Sbjct: 503 VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM--CAKGIPPN 560

Query: 156 ICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           I      +   DGY      D ALKM +++  +G+      +   I+ FC+   +   L 
Sbjct: 561 IVTYTSFI---DGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQ 617

Query: 211 MLDEVRKRE--------NSMING-------------------------SVIAVLIIHGFC 237
           +L  + K          NS I G                         +     +I GF 
Sbjct: 618 VLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFS 677

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   V  A K+  E+  +   PD I +  +       G + +   +L +  +L + P   
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVL 737

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG--SVSSIDPRSA 349
            Y   I G +   ++ EA  L + ++  K   DD   + L+G  S+ S  P  A
Sbjct: 738 MYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSDSPIDA 791



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%)

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM+ KG   D   ++ +M AC +E +   A +L+D+M AS    + +  ++ I+   ++ 
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           +   AL +   M + G  P   T+ S+++ L +   ++ A  + ++ +     ++  + +
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLAT 286

Query: 545 TFMISLC 551
           T M   C
Sbjct: 287 TLMHGYC 293


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/482 (20%), Positives = 210/482 (43%), Gaps = 39/482 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++  L  + + +  D + K++    +  +   Y  +I +L +    + A  +F++
Sbjct: 362 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 421

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++     +     NSL+      G +D A  +   M   G+  +   +   I   C N  
Sbjct: 422 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 481

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + +  E+ +R  +  N +  A  +I+GFCK K+++EA ++ D++      P+ + +
Sbjct: 482 LSSCMELHREMAERGIAWNNYTFTA--LINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 539

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ E + L+G++ +   +  +  ++G+ P    YR  I GL +   + +A E    + +
Sbjct: 540 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 599

Query: 325 GKFTIDDDVLNALI------------------------------------GSVSSIDPRS 348
               +++  L AL+                                     ++   D   
Sbjct: 600 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEK 659

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           + V F  M E+G  P     + +   L K     + +  +  +  + Y  +  ++ V+++
Sbjct: 660 SCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLIN 719

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC SG L  A  + +EM    + P+   YN  ++    E  +  AK L   M   G   
Sbjct: 720 NLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLA 778

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ ++NILI    + G+I+ A+ L   + E G +PD  +Y++++  LC+  ++  AFE++
Sbjct: 779 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 838

Query: 529 NK 530
           N+
Sbjct: 839 NE 840



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +   M   GV+ S + + V ++  C+N ++ + + +       +N M+N  V A
Sbjct: 237 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEV-------KNVMVNIGVTA 289

Query: 230 -----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                  +++GFC+ + +E A ++  ++      P       + +E +    V E   + 
Sbjct: 290 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 349

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K   LG+ P    Y   I  L    R  +A  L + + +G+    ++V  A++  + ++
Sbjct: 350 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAIL--IHAL 406

Query: 345 DPRS----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             R     A+  F+ M +KG   T+   ++L    CK+   D    +   +         
Sbjct: 407 CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 466

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            SY+ +++ LC +G L     + +EM  +G+  +   + +L+   C++  +  A +L+D+
Sbjct: 467 ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 526

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  S    N  T+N++I  +  VG I  A +L+  M+E G+ PD  TY SL+ GLC  + 
Sbjct: 527 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSG 586

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           +  A E      N   +L    L+  +    R G F     L     +RG+  DL
Sbjct: 587 VSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 641



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 19/369 (5%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FD+M   GV      +   I  +CE+  L     ++  VR     +   +V   ++
Sbjct: 205 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV--VRMESEGVKASAVPYNVL 262

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR---K 289
           ++G CK  RV+EA +V + +       D + YR +   F  M    E E+ L+      +
Sbjct: 263 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME---ELEMALRITHDMIR 319

Query: 290 LGVAPRTNDYREFILGL----IVERRICEAKELGEV-IVSGKFTIDDDVLNALIGSVSSI 344
           LG  P   +    I  L    +VE     A +LG++ +V   F       NALI  +   
Sbjct: 320 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFA-----YNALIDKLCKN 374

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +    A   F  M  +G  P   T + L   LCKR   ++ + ++  +        +  Y
Sbjct: 375 ERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPY 434

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++  C  G L  A G++  M ++GL P  + Y+ L+   CR   L    +L  +M  
Sbjct: 435 NSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAE 494

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G + N  T+  LI+ F +  +++ A RLF  M++  V P+  T+  ++EG C   N++ 
Sbjct: 495 RGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRK 554

Query: 524 AFEVFNKSV 532
           AF+++++ V
Sbjct: 555 AFQLYDQMV 563



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 161/407 (39%), Gaps = 45/407 (11%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++++ +++   L   I     +  Q+    +  D+  YR    SLI G      
Sbjct: 531 NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR----SLISGLCLTSG 586

Query: 139 FSVFNEVKFNCEDIGPEICN-SLLAVLAS---DGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            S  NE   + E+    + N SL A+L     +G       ++DEM+ RGV+   + F +
Sbjct: 587 VSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTI 646

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   +     +   +  E++  E  +    +    +I    K + + +A    D++ +
Sbjct: 647 IVYAALKQHDKEKSCVLFREMK--EQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVV 704

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ + + ++       G +   E++ K+     V P    Y  F+     E  + +
Sbjct: 705 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 764

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AK+L   ++ G                      ++IV FN +I               K 
Sbjct: 765 AKDLHSAMLQGHL--------------------ASIVSFNILI---------------KG 789

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K  E +++   ++ + +  D  SY+ ++  LC  G + +A+ +  EM  KGL PD
Sbjct: 790 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 849

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  YN  +  C        A  ++  M  SG   N  TY  L+S  S
Sbjct: 850 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 896


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 135/582 (23%), Positives = 246/582 (42%), Gaps = 91/582 (15%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++Y+ ++K  S   Q++    +L ++   +   D  V   +I +L +    ++A+ +F  
Sbjct: 510  VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF-- 567

Query: 145  VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
             +    ++ P +   N LLA L  +G I  A+++F+ M+  G   +TI F   +   C+N
Sbjct: 568  CRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKN 627

Query: 203  AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             ++   L M     K         V+    IIHGF K  +++ A  +  +++ +  +PD 
Sbjct: 628  DEVDLALKMF---YKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK-KLLRPDH 683

Query: 262  I-----------------AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
            +                 A+RI  + F  +GS  +R                  + + + 
Sbjct: 684  VTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSF----------------WEDVMG 727

Query: 305  GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRV 362
            G++ E    +A   GE +V      DD VL  +I  +      S    VF  F  E G  
Sbjct: 728  GILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVK 787

Query: 363  PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
            PTL                    +VY +L   D F  +E +NV V           A+ +
Sbjct: 788  PTL--------------------KVYNLLI--DGF--LEVHNVEV-----------AWNL 812

Query: 423  IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             +EMK  G  PD   YNSL++A  +   +     L+D+M   GC  N  TYN++IS   +
Sbjct: 813  FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872

Query: 483  VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
               ++ A+ L++N++    +P   T+  L++GL +   L  A E+F+  V++      +I
Sbjct: 873  SNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAI 932

Query: 543  LSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
             +  +    + GH   A +  +     G+  DL    S+ IL+  L  A  V+ A+ + +
Sbjct: 933  YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDL---KSYTILVDILCIAGRVDDALHYFE 989

Query: 598  WIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
             ++++   P ++      +   L  S   E  L L H +Q +
Sbjct: 990  KLKQAGLDPDLVA--YNLMINGLGRSQRTEEALSLFHEMQNR 1029



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 1/301 (0%)

Query: 231  LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            L+I GF +   VE A+ + +E++   C PD   Y  + +     G + E   +  +    
Sbjct: 795  LLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTR 854

Query: 291  GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
            G  P T  Y   I  L+   R+ +A +L   +VSG F+        LI G + S     A
Sbjct: 855  GCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDA 914

Query: 350  IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               F+ M+  G  P  +  + L     K    D   E +K +       D++SY ++V  
Sbjct: 915  HEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDI 974

Query: 410  LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            LC +GR+ +A    +++K+ GLDPD+  YN ++    R      A  L+ +M   G   +
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPD 1034

Query: 470  LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            L TYN LI     VG IE A +++  +   G+ P+  TY +L+ G     N + A+ ++ 
Sbjct: 1035 LYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYK 1094

Query: 530  K 530
            K
Sbjct: 1095 K 1095



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 207/487 (42%), Gaps = 9/487 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y  I KSL +   +    S L++++     L++  Y  +I  L+Q    ++A  V+   
Sbjct: 161 TYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYR-- 218

Query: 146 KFNCEDIGPEICNSLLAVLASDGY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +   E + P +  +  A++ + G    I   + + +EM   G+  +   + + I     +
Sbjct: 219 RMVSEGLKPSL-KTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRD 277

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K+ +   ++   R  ++      V   ++I   C  +++++A  +  +++    KPD +
Sbjct: 278 GKIDEAYRIMK--RMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKV 335

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + ++F   G + + E +  +    G AP    +   +  L    RI EA +L + +
Sbjct: 336 TYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM 395

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  +    N LI G + +     A+  F+ M   G  PT  T   L     K    
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHP 455

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            + +E ++ + A     ++ + N  +  L   GRL EA  +  E+K  GL PD   YN +
Sbjct: 456 GKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMM 515

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           M+   +   +  A KL  +M    C  ++   N LI    + G +E A ++F  M E  +
Sbjct: 516 MKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNL 575

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           AP   TY  LL GL +E  +Q A ++F     H         +T +  LC+     +A K
Sbjct: 576 APTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALK 635

Query: 562 LLRGLSS 568
           +   +++
Sbjct: 636 MFYKMTT 642



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 172/390 (44%), Gaps = 7/390 (1%)

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           VL  DG ID A ++   M   G     + + V I   C   KL   + +    + + +S 
Sbjct: 273 VLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLF--TKMKSSSH 330

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
               V  V ++  F     +++  K+  E+      PD + + I+       G + E   
Sbjct: 331 KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFD 390

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SV 341
           +L   RK GV P  + Y   I GL+   R+ +A +L   + S            LI    
Sbjct: 391 LLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHG 450

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            S  P  A+  F  M  +G  P +   +    +L +  +  E   ++  L ++    D  
Sbjct: 451 KSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSV 510

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN+M+      G++ EA  ++ EM +   +PDV   NSL++   +   +  A +++ +M
Sbjct: 511 TYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRM 570

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                +  + TYNIL++   + G+I+ A++LF +M   G +P+  T+ +LL+ LC+   +
Sbjct: 571 EEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEV 630

Query: 522 QAAFEVFNK----SVNHDVMLARSILSTFM 547
             A ++F K    +   DV+   +I+  F+
Sbjct: 631 DLALKMFYKMTTMNCRPDVLTFNTIIHGFI 660



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 182/445 (40%), Gaps = 36/445 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y   ++ L    +I+    ++K++  +    D   Y  +I +L   +    A  +F ++
Sbjct: 266 TYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKM 325

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K +          +LL   +  G++D   K++ EM   G     + F + +   C+  ++
Sbjct: 326 KSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRI 385

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   +LD +RK +  + N      LI  G  +  R+++A  +   +     +P    Y 
Sbjct: 386 NEAFDLLDTMRK-QGVLPNLHTYNTLI-SGLLRANRLDDALDLFSNMESLGVEPTAYTYI 443

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ +     G   +     +K +  G+AP        +  L    R+ EAK +       
Sbjct: 444 LLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAM------- 496

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                                      FN +   G  P   T + + K   K  + DE +
Sbjct: 497 ---------------------------FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAI 529

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++   +S      D+   N ++  L  +GR+ EA+ +   M+   L P V  YN L+   
Sbjct: 530 KLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGL 589

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +E  ++ A +L++ M   GCS N  T+N L+    +  E++ AL++F+ M      PD 
Sbjct: 590 GKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDV 649

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            T+ +++ G  ++  ++ A  +F++
Sbjct: 650 LTFNTIIHGFIKQNQIKNAIWLFHQ 674



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 177/404 (43%), Gaps = 49/404 (12%)

Query: 115  ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE-DIGP--EICNSLLAVLASDGYID 171
            I  D SV   II  L + K T  A +VF  VKF  E  + P  ++ N L+        ++
Sbjct: 750  ICKDDSVLIPIIKVLCKHKKTSVARNVF--VKFTKELGVKPTLKVYNLLIDGFLEVHNVE 807

Query: 172  NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
             A  +F+EM   G    T  +                           NS+I+       
Sbjct: 808  VAWNLFEEMKSAGCAPDTFTY---------------------------NSLIDA------ 834

Query: 232  IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
              HG  K  ++ E F + DE+  R CKP+ I Y +V     +  +  ++ + L      G
Sbjct: 835  --HG--KSGKINELFDLYDEMLTRGCKPNTITYNMVISNL-VKSNRLDKAMDLYYNLVSG 889

Query: 292  -VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPR 347
              +P    +   I GL+   R+ +A E+ + +V      +  + N L+   G +  +D  
Sbjct: 890  DFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVD-- 947

Query: 348  SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            +A  FF  M+++G  P L + + L   LC   + D+ +  ++ L       D+ +YN+M+
Sbjct: 948  TACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMI 1007

Query: 408  SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
            + L  S R  EA  +  EM+ +G+ PD+  YNSL+       ++  A K+++++   G  
Sbjct: 1008 NGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067

Query: 468  GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             N+ TYN LI  ++  G  E A  ++  M+  G  P+  T+  L
Sbjct: 1068 PNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 110/545 (20%), Positives = 239/545 (43%), Gaps = 33/545 (6%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL +F    + PN  H+  + + +L+ L + R++  +  V   ++   I  +   Y  I 
Sbjct: 107 ALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIF 166

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
            SL      ++A S   +++     +     N L+  L   G+   AL+++  M   G++
Sbjct: 167 KSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLK 226

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVE 243
            S   F   +    +   +  V+ +L+E+     R N       I VL   G     +++
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDG-----KID 281

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA++++  +    C PD + Y ++ +       + +   +  K +     P    Y   +
Sbjct: 282 EAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLL 341

Query: 304 -----LGLI--VERRICEAKELGEVIVSGKFTIDDDVLNALI--GSVSSIDPRSAIVFFN 354
                 G +  VE+   E +  G       FTI   ++NAL   G ++      A    +
Sbjct: 342 DKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTI---LVNALCKAGRINE-----AFDLLD 393

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M ++G +P L T + L   L + N+ D+ ++++  + +        +Y +++ +   SG
Sbjct: 394 TMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSG 453

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
              +A    ++MK +G+ P++   N+ + +      L  AK +++++ +SG + +  TYN
Sbjct: 454 HPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +++  +S+VG+++ A++L   M +    PD     SL++ L +   ++ A+++F +    
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-HVILLKSLADA----REV 589
           ++       +  +  L + G    A +L   ++   GH  S + I   +L D      EV
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMN---GHGCSPNTITFNTLLDCLCKNDEV 630

Query: 590 EMAIE 594
           ++A++
Sbjct: 631 DLALK 635



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 120/291 (41%), Gaps = 9/291 (3%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
             +Y+S++ +   S +IN +  +  ++       ++  Y  +I +L++     KA  ++  
Sbjct: 826  FTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYN 885

Query: 145  VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +     D  P  C    L+  L   G +D+A +MFD M H G   ++  + + +  +   
Sbjct: 886  LVSG--DFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGY--- 940

Query: 203  AKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             KLG V +  +  ++     I   + +  +++   C   RV++A    ++L+     PD 
Sbjct: 941  GKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDL 1000

Query: 262  IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
            +AY ++           E   +  + +  G+ P    Y   IL L +   I EA ++ E 
Sbjct: 1001 VAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEE 1060

Query: 322  IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
            +       +    NALI G   S +   A   +  M+  G  P   T + L
Sbjct: 1061 LQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 6/342 (1%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +L
Sbjct: 151 IIANHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 209

Query: 285 KKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +   + G   +P    Y   I     E  + +A +L + +V      D    ++++ ++ 
Sbjct: 210 RMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALC 269

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  A  F   M+ KG +P   T +NL        +  E V V+K +  +    D+ 
Sbjct: 270 KARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 329

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           + N+++  LC  G+++EA  V   M  KG +PDV  Y  ++     +  L     L+D M
Sbjct: 330 TLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLM 389

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G + ++ T+++LI  ++  G ++ A+ +F+ M + GV PD  TYT+++  LC+   +
Sbjct: 390 LGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKM 449

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             A E FN+ ++  V   +      +   C  G  L A +L+
Sbjct: 450 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 491



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/479 (20%), Positives = 204/479 (42%), Gaps = 15/479 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +        ++ H +       R   A+D +L +        D   Y  +
Sbjct: 133 LALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 192

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           + SL  QGK+ Q A  +   +        P++    +++     +G ++ A  +F EM  
Sbjct: 193 LKSLCDQGKSGQ-ADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQ 251

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIHGFCK 238
           RG+    + +   +   C+   +G+  + L ++  +    +N   N       +I+G+  
Sbjct: 252 RGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNN------LIYGYSS 305

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             + +EA +V  E+R     PD +   ++       G + E   V       G  P    
Sbjct: 306 TGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 365

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y+  + G   +  + +  +L ++++      D    + LI + ++      A++ FN M 
Sbjct: 366 YKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR 425

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           + G  P + T + +   LC+  K D+ +E +  +       D  +Y+ ++   CT G L 
Sbjct: 426 DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLL 485

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A  +I E+   G+  D+ F++S++   C+   +  A+ ++D     G   +   Y++L+
Sbjct: 486 KAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLM 545

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
             +  VG++E ALR+F  M+  G+ P+   Y +L+ G C+   +     +F + +   +
Sbjct: 546 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 604



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 194/453 (42%), Gaps = 19/453 (4%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++ +L  +R +   ++ L+Q+    +  D+  Y  +I         ++A  VF E
Sbjct: 259 VTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++ +   I P++   N L+  L   G I  A  +FD M+ +G       + + +  +   
Sbjct: 319 MRRH--SILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIA------VLIIHGFCKGKRVEEAFKVLDELRIRE 256
             L  +  + D        ++ G  IA       ++I  +     +++A  + +E+R   
Sbjct: 377 GCLVDMTDLFD--------LMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            KPD + Y  V      +G + +      +    GVAP    Y   I G      + +AK
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL   I++    +D    +++I ++  +     A   F+  +  G+ P     S L    
Sbjct: 489 ELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGY 548

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K ++ + V+  + +     ++  Y  +V+  C  GR+ E   + +EM +KG+ P  
Sbjct: 549 CLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 608

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN +++         PAK  + +M  SG + N  TYNI++  F +    + A+ LF  
Sbjct: 609 ILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKE 668

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +    V  D  T  +++ G+ Q   ++ A ++F
Sbjct: 669 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLF 701


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 196/474 (41%), Gaps = 42/474 (8%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN---EVKFNCEDIGPEICNS 159
           +D VL+++       D   Y  ++  L   K +Q+A  + +   + K  C  +      +
Sbjct: 155 MDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCP-LDVVAYTT 213

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           ++  L  +G +D A  +FD M  RG     + +   I    +   + +   +    R  +
Sbjct: 214 VINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF--TRMVK 271

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           N ++   ++   ++HG+C   + +EA  +  ++     +PD + Y  + +     G   E
Sbjct: 272 NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 331

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +     K G  P +  Y   + G   E  + E  +L ++++     +   + N ++G
Sbjct: 332 ARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMG 391

Query: 340 SVS------------------SIDPR------------------SAIVFFNFMIEKGRVP 363
           + +                   ++P                    A+  FN +  +G  P
Sbjct: 392 AYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAP 451

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            +   + L   LC  +K D++ E+   +       D   +N ++  LC  GR+ EA  + 
Sbjct: 452 NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 511

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
             M R G++P+ + YN+L++  C +  +  A KL   M  +G   +  TYN +I+ +S+ 
Sbjct: 512 DLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQN 571

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           G IE  L L   M  KGV P   TY  LL+GL Q     AA E++ + +  D +
Sbjct: 572 GRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIKWDTV 625



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 44/318 (13%)

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS--GKFTID-- 330
           G     ++VL++  +LG  P    Y   + GL  ++   +A +L  ++    G+  +D  
Sbjct: 150 GRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVV 209

Query: 331 --DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
               V+N L+     +D   A   F+ M+++G  P + T S++   L K    D+  +V+
Sbjct: 210 AYTTVINGLL-REGQLD--KAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF 266

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +  N    D   Y  +V   C+SG+ +EA G+ ++M R G++PDV  Y +LM+  C+ 
Sbjct: 267 TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKN 326

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTY----------------------------------- 473
                A+K++D +   G   +  TY                                   
Sbjct: 327 GKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIF 386

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N+++  +++  +++ AL +F NM ++G+ PD   Y ++L+ LC    +  A   FN   +
Sbjct: 387 NMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKS 446

Query: 534 HDVMLARSILSTFMISLC 551
             +     + +T +  LC
Sbjct: 447 EGLAPNIVVFTTLIHGLC 464



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 150/341 (43%), Gaps = 11/341 (3%)

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            +++ G C  K  ++A  +L  +   +  C  D +AY  V       G + +   +    
Sbjct: 175 TILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAM 234

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
              G +P    Y   I  L   + + +A ++   +V      D  +  +L+ G  SS  P
Sbjct: 235 LDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKP 294

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + AI  F  M   G  P + T + L   LCK  KS E  +++  L    +  D  +Y  +
Sbjct: 295 KEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTL 354

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +    T G L E + ++  M +KG+      +N +M A  + + +  A  ++  M   G 
Sbjct: 355 LHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGL 414

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQ 522
           + ++  Y  ++      G ++ AL  F+++  +G+AP+   +T+L+ GLC     +   +
Sbjct: 415 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEE 474

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            AFE+ ++ +  D +   +I+     +LC++G  + A  L 
Sbjct: 475 LAFEMIDRGICLDTIFFNAIMG----NLCKKGRVIEAKNLF 511


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/482 (20%), Positives = 212/482 (43%), Gaps = 39/482 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++  L  + + +  D + K++    +  +   Y  +I +L +    + A  +F++
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++     +     NSL+      G +D A  +   M   G+  +   +   I   C N  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + +  E+ +R  +  N +  A  +I+GFCK K+++EA ++ D++      P+ + +
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTA--LINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE------- 317
            ++ E + L+G++ +   +  +  ++G+ P    YR  I GL +   + +A E       
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 318 -------------LGEVIVSGKFT-------------IDDDVLNALI---GSVSSIDPRS 348
                        L      G+FT             +  D+++  I    ++   D   
Sbjct: 577 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEK 636

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           + V F  M E+G  P     + +   L K     + +  +  +  + Y  +  ++ V+++
Sbjct: 637 SCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLIN 696

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC SG L  A  + +EM    + P+   YN  ++    E  +  AK L   M   G   
Sbjct: 697 NLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLA 755

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ ++NILI    + G+I+ A+ L   + E G +PD  +Y++++  LC+  ++  AFE++
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 529 NK 530
           N+
Sbjct: 816 NE 817



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +   M   GV+ S + + V ++  C+N ++ + + +       +N M+N  V A
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEV-------KNVMVNIGVTA 266

Query: 230 -----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                  +++GFC+ + +E A ++  ++      P       + +E +    V E   + 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K   LG+ P    Y   I  L    R  +A  L + + +G+    ++V  A++  + ++
Sbjct: 327 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAIL--IHAL 383

Query: 345 DPRS----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             R     A+  F+ M +KG   T+   ++L    CK+   D    +   +         
Sbjct: 384 CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            SY+ +++ LC +G L     + +EM  +G+  +   + +L+   C++  +  A +L+D+
Sbjct: 444 ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  S    N  T+N++I  +  VG I  A +L+  M+E G+ PD  TY SL+ GLC  + 
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSG 563

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           +  A E      N   +L    L+  +    R G F     L     +RG+  DL
Sbjct: 564 VSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 618



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 171/388 (44%), Gaps = 19/388 (4%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FD+M   GV      +   I  +CE+  L     ++  VR     +   +V   ++
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV--VRMESEGVKASAVPYNVL 239

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR---K 289
           ++G CK  RV+EA +V + +       D + YR +   F  M    E E+ L+      +
Sbjct: 240 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME---ELEMALRITHDMIR 296

Query: 290 LGVAPRTNDYREFILGL----IVERRICEAKELGEV-IVSGKFTIDDDVLNALIGSVSSI 344
           LG  P   +    I  L    +VE     A +LG++ +V   F       NALI  +   
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFA-----YNALIDKLCKN 351

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +    A   F  M  +G  P   T + L   LCKR   ++ + ++  +        +  Y
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPY 411

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++  C  G L  A G++  M ++GL P  + Y+ L+   CR   L    +L  +M  
Sbjct: 412 NSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAE 471

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G + N  T+  LI+ F +  +++ A RLF  M++  V P+  T+  ++EG C   N++ 
Sbjct: 472 RGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRK 531

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLC 551
           AF+++++ V   +        + +  LC
Sbjct: 532 AFQLYDQMVEMGLKPDNYTYRSLISGLC 559



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 161/407 (39%), Gaps = 45/407 (11%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++++ +++   L   I     +  Q+    +  D+  YR +I  L       KA
Sbjct: 508 NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKA 567

Query: 139 FSVFNEVKFNCEDIGPEICN-SLLAVLAS---DGYIDNALKMFDEMSHRGVEFSTIGFGV 194
               NE   + E+    + N SL A+L     +G       ++DEM+ RGV+   + F +
Sbjct: 568 ----NEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTI 623

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   +     +   +  E++  E  +    +    +I    K + + +A    D++ +
Sbjct: 624 IVYAALKQHDKEKSCVLFREMK--EQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVV 681

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ + + ++       G +   E++ K+     V P    Y  F+     E  + +
Sbjct: 682 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 741

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AK+L   ++ G                      ++IV FN +I               K 
Sbjct: 742 AKDLHSAMLQGHL--------------------ASIVSFNILI---------------KG 766

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K  E +++   ++ + +  D  SY+ ++  LC  G + +A+ +  EM  KGL PD
Sbjct: 767 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  YN  +  C        A  ++  M  SG   N  TY  L+S  S
Sbjct: 827 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/482 (20%), Positives = 212/482 (43%), Gaps = 39/482 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y++++  L  + + +  D + K++    +  +   Y  +I +L +    + A  +F++
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++     +     NSL+      G +D A  +   M   G+  +   +   I   C N  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   + +  E+ +R  +  N +  A  +I+GFCK K+++EA ++ D++      P+ + +
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTA--LINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE------- 317
            ++ E + L+G++ +   +  +  ++G+ P    YR  I GL +   + +A E       
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 318 -------------LGEVIVSGKFT-------------IDDDVLNALI---GSVSSIDPRS 348
                        L      G+FT             +  D+++  I    ++   D   
Sbjct: 577 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEK 636

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           + V F  M E+G  P     + +   L K     + +  +  +  + Y  +  ++ V+++
Sbjct: 637 SCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLIN 696

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC SG L  A  + +EM    + P+   YN  ++    E  +  AK L   M   G   
Sbjct: 697 NLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLA 755

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ ++NILI    + G+I+ A+ L   + E G +PD  +Y++++  LC+  ++  AFE++
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 529 NK 530
           N+
Sbjct: 816 NE 817



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +   M   GV+ S + + V ++  C+N ++ + + +       +N M+N  V A
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEV-------KNVMVNIGVTA 266

Query: 230 -----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                  +++GFC+ + +E A ++  ++      P       + +E +    V E   + 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 326

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K   LG+ P    Y   I  L    R  +A  L + + +G+    ++V  A++  + ++
Sbjct: 327 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAIL--IHAL 383

Query: 345 DPRS----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
             R     A+  F+ M +KG   T+   ++L    CK+   D    +   +         
Sbjct: 384 CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            SY+ +++ LC +G L     + +EM  +G+  +   + +L+   C++  +  A +L+D+
Sbjct: 444 ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M  S    N  T+N++I  +  VG I  A +L+  M+E G+ PD  TY SL+ GLC  + 
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSG 563

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
           +  A E      N   +L    L+  +    R G F     L     +RG+  DL
Sbjct: 564 VSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 618



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 19/369 (5%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           A  +FD+M   GV      +   I  +CE+  L     ++  VR     +   +V   ++
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV--VRMESEGVKASAVPYNVL 239

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR---K 289
           ++G CK  RV+EA +V + +       D + YR +   F  M    E E+ L+      +
Sbjct: 240 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME---ELEMALRITHDMIR 296

Query: 290 LGVAPRTNDYREFILGL----IVERRICEAKELGEV-IVSGKFTIDDDVLNALIGSVSSI 344
           LG  P   +    I  L    +VE     A +LG++ +V   F       NALI  +   
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFA-----YNALIDKLCKN 351

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +    A   F  M  +G  P   T + L   LCKR   ++ + ++  +        +  Y
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPY 411

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++  C  G L  A G++  M ++GL P  + Y+ L+   CR   L    +L  +M  
Sbjct: 412 NSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAE 471

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G + N  T+  LI+ F +  +++ A RLF  M++  V P+  T+  ++EG C   N++ 
Sbjct: 472 RGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRK 531

Query: 524 AFEVFNKSV 532
           AF+++++ V
Sbjct: 532 AFQLYDQMV 540



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 161/407 (39%), Gaps = 45/407 (11%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N   + ++++ +++   L   I     +  Q+    +  D+  YR    SLI G      
Sbjct: 508 NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR----SLISGLCLTSG 563

Query: 139 FSVFNEVKFNCEDIGPEICN-SLLAVLAS---DGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            S  NE   + E+    + N SL A+L     +G       ++DEM+ RGV+   + F +
Sbjct: 564 VSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTI 623

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   +     +   +  E++  E  +    +    +I    K + + +A    D++ +
Sbjct: 624 IVYAALKQHDKEKSCVLFREMK--EQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVV 681

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ + + ++       G +   E++ K+     V P    Y  F+     E  + +
Sbjct: 682 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 741

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           AK+L   ++ G                      ++IV FN +I               K 
Sbjct: 742 AKDLHSAMLQGHL--------------------ASIVSFNILI---------------KG 766

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK  K  E +++   ++ + +  D  SY+ ++  LC  G + +A+ +  EM  KGL PD
Sbjct: 767 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  YN  +  C        A  ++  M  SG   N  TY  L+S  S
Sbjct: 827 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 140/305 (45%), Gaps = 11/305 (3%)

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDPRSAIVFFNFMIEK 359
           I     E ++    EL   ++     +D+ V NALI         D  S I+  + MI  
Sbjct: 208 IKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEIL--HIMIAM 265

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P++ T   +   L KR K+DE   V+  L    YF D   Y  ++   C  G L EA
Sbjct: 266 KCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEA 325

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +  EM +KGL P+   YN ++   C+      A+KL+D M   G + N+ +Y+ +IS 
Sbjct: 326 RKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISG 385

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G+ + AL LFH M  KG+A D  +Y SL++GLCQE  L  A  + NK +   +  +
Sbjct: 386 LYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPS 445

Query: 540 RSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLAD-AREVEMAI 593
            S  +  +  LC+ G    A +LL     R L       D  +I L    D A+ +E  +
Sbjct: 446 VSSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLL 505

Query: 594 EHIKW 598
           + + W
Sbjct: 506 KMLSW 510



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/500 (21%), Positives = 203/500 (40%), Gaps = 26/500 (5%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L+L F +W +    F     S +++  +L  +  + A  S+L+      +  + S+  ++
Sbjct: 79  LSLRFLHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSLLEYPDF--VPKNDSLEGYV 136

Query: 126 IPSLIQGKN--TQKAFSVF---NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
               + G+N   ++ F VF    +V F        +C  LLA L   G  D   K+++ M
Sbjct: 137 ---RLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVC--LLACLKV-GRTDLVWKLYELM 190

Query: 181 --SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR----ENSMINGSVIAVLIIH 234
             S  GV       G  I  FC   K+     +L +V ++    +N++ N       +I+
Sbjct: 191 IESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNA------LIN 244

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           GFCK K+ +   ++L  +   +C P    Y+ +           E   V    +  G  P
Sbjct: 245 GFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFP 304

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFF 353
               Y   I G      + EA++L   ++      ++   N +I G     D   A   +
Sbjct: 305 DRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLY 364

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
           + M  +G    + + S +   L    K+DE + ++  +S      D+ SYN ++  LC  
Sbjct: 365 DDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQE 424

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G L +A  ++ ++  +GL+P VS +  L++  C+      A +L   M          T+
Sbjct: 425 GELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTH 484

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           + +I   S+ G+    +     ML   + P+  T+  L++ L +E  L     V +    
Sbjct: 485 DYMIIGLSKKGDFAQGMEWLLKMLSWKLKPNMQTFEHLIDCLKRENRLDDILIVLDLMFR 544

Query: 534 HDVMLARSILSTFMISLCRR 553
               L +S + + +    ++
Sbjct: 545 EGYRLEKSRICSLVTKFSKK 564



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLR 417
           G +P+ S+ +       K  ++D + ++Y+++  S      D+E+   ++   C   ++ 
Sbjct: 159 GFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVF 218

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
             Y +++++  KGL  D + +N+L+   C++       ++   M A  C+ ++ TY  +I
Sbjct: 219 NGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEII 278

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           +   +  + + A R+F+++ ++G  PD   YT++++G C    L  A +++ + +   ++
Sbjct: 279 NGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLV 338

Query: 538 LARSILSTFMISLCRRGHFLVATKL 562
                 +  +   C+   F  A KL
Sbjct: 339 PNEYTYNVMIYGYCKVRDFAEARKL 363


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 182/408 (44%), Gaps = 20/408 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++ +L Q     +A SVF  ++   E      CN++L  L     +    ++FDEM  RG
Sbjct: 112 LVIALSQMALPDEALSVFGRLR---ELPALPACNAILDGLVKAHMLARVWELFDEMLGRG 168

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVE 243
           +  S + +   I        + +   + D++  R    I+ +V+    +I   C+   + 
Sbjct: 169 MVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR---IDPNVVTYTTMICALCEEDCIG 225

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE------VVLKKKRKLGVAPRTN 297
           +A  +  E++    +P+   Y        LM S F+R+      V      K G+ P   
Sbjct: 226 DAEGLFLEMKEAGMRPNLYTYN------ALMSSHFKRDNIKHALVFYYDLLKCGLVPNDV 279

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
            +   I GL    RI EAK +   +   +      V N+LI G+  S   + A+ FF  +
Sbjct: 280 IFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEI 339

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           I KG  P   T S + + LC   +        +V+  +    +  +YNV++   C SG L
Sbjct: 340 IRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNL 399

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA      M   G++P+V  Y+SL++   +   +  A  ++ +M A G   N+ TY  L
Sbjct: 400 DEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTAL 459

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           I   ++ G+++ A  L   M EKG+  +A T + L++GLC+E  +Q A
Sbjct: 460 IHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 134/306 (43%), Gaps = 1/306 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+ G  K   +   +++ DE+  R   P  + Y  +    +  G V +   V  +     
Sbjct: 144 ILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR 203

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAI 350
           + P    Y   I  L  E  I +A+ L   +       +    NAL+ S    D  + A+
Sbjct: 204 IDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHAL 263

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF+  +++ G VP     + L   LC+ N+  E   ++  +   +    +  YN ++   
Sbjct: 264 VFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SG  +EA    QE+ RKGL PD    + ++   C    ++ A +  + M  SG + N 
Sbjct: 324 FRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNA 383

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN+LI ++ + G ++ AL     M E GV P+  TY+SL++G  +   ++ A  ++ +
Sbjct: 384 AAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTE 443

Query: 531 SVNHDV 536
            V   V
Sbjct: 444 MVAKGV 449



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P  A+  F  + E   +P L   + +   L K +    + E++  +        + +YN 
Sbjct: 122 PDEALSVFGRLRE---LPALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNT 178

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++     G + +A+ V  +M  + +DP+V  Y +++ A C ED +  A+ L+ +M  +G
Sbjct: 179 LINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAG 238

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              NL TYN L+S   +   I+ AL  ++++L+ G+ P+   +T+L++GLCQ   +  A 
Sbjct: 239 MRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAK 298

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILL 580
            +F     ++V     + ++ +    R G+   A         +GL  D     +  I++
Sbjct: 299 NIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPD---EFTCSIVV 355

Query: 581 KSLADAREVEMAIEHIKWIQESS 603
           + L D  ++++A   ++ +Q+S 
Sbjct: 356 RGLCDGGQMQVATRFLEVMQQSG 378



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG--K 133
           QQ     +  +Y+ ++     S  ++  ++++   +++++ ++ +V  +   SLI G  K
Sbjct: 375 QQSGIALNAAAYNVLIDEYCKSGNLD--EALVTCTRMSEVGVEPNVVTY--SSLIDGHSK 430

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           N +   ++    +   + + P +    +L+   A +G +D A  +  EM  +G+  + I 
Sbjct: 431 NGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAIT 490

Query: 192 FGVFIWKFCENAKLGQVLSMLDEV----RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
             V +   C   ++   +  + E     +  +N  I  SV  + +I+G     +  EA  
Sbjct: 491 VSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACH 550

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
               +R     PD   Y +V     ++G V    ++     K+GV P
Sbjct: 551 FFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/580 (22%), Positives = 240/580 (41%), Gaps = 90/580 (15%)

Query: 5   PATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHH 64
           P   L  R +  II A+N +         L   L  L L  SL+P   + ++    L   
Sbjct: 61  PRRHLICRATNLIIGATNLSDAFSD----LSDYLSSLTL--SLTPDEASEILKS--LNSP 112

Query: 65  SLALGFFNWA-SQQPNFTHSPLSYHSILKSLSLSRQINAIDSV----------------- 106
            +A+ FF +  S  PN  + P  Y+ I+  LS S   +  D V                 
Sbjct: 113 LVAVEFFKFVPSLCPNSQNDPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSNVHGNIS 172

Query: 107 ------------------LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
                             L+ VK   + ++S  Y+ ++ + ++ +++ KAF V+ E++  
Sbjct: 173 TVNILIGFFGDTEDLQMCLRLVKKWGLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRG 232

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
              +     N LL  LA D   + A ++F++M  R        + + I       K  + 
Sbjct: 233 GHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEA 289

Query: 209 LSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + +E+      +  G  + V+    ++    KGK V++A +V   +    C+P+   Y
Sbjct: 290 VGLFNEM------ITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTY 343

Query: 265 RIVAEEFKLMGSVFEREVVLK-KKR---------------KLG----------------V 292
            +V       G +   + +++  KR               KLG                V
Sbjct: 344 SLVLNLLVAEGQLVRLDGIVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPV 403

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV- 351
               + Y   +  L    +  EA E+   I       D  + N +  ++  +   S I  
Sbjct: 404 KGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHD 463

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F  M + G  P + T + L  +  +  + DE + +++ L  +D   D+ SYN +++ L 
Sbjct: 464 LFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G + EA+   +EM+ KGL+PDV  Y++LME   + + +  A  L+++M   GC  N+ 
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           TYNIL+    + G    A+ L+  M ++G+ PD+ TYT L
Sbjct: 584 TYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVL 623



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 34/257 (13%)

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++  +V++ +       D  SY +M+  +   G+  EA G+  EM  +GL  +V  YN
Sbjct: 250 KDEKACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYN 309

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI------------------------ 475
           +LM+   +  ++  A +++ +M  +GC  N  TY++                        
Sbjct: 310 TLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRY 369

Query: 476 --------LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
                   L+   S++G +  A RLF +M    V  +  +Y S+LE LC       A E+
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLAD 585
            +K     V+    + +T   +L +         L   +  D    D  ++ IL+ S   
Sbjct: 430 LSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGR 489

Query: 586 AREVEMAIEHIKWIQES 602
             EV+ AI   + ++ S
Sbjct: 490 VGEVDEAINIFEELERS 506



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 156/387 (40%), Gaps = 31/387 (8%)

Query: 154 PEICNSLLAVLA----SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           P + N ++ +L+    SD + D    + D M    V  +     + I  F +   L   L
Sbjct: 133 PFLYNRIILILSRSNLSDRF-DRVRSILDSMVKSNVHGNISTVNILIGFFGDTEDLQMCL 191

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            ++ +   + NS          ++  + + +   +AF V  E+R    K D  AY ++ +
Sbjct: 192 RLVKKWGLKMNSFTYKC-----LLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLD 246

Query: 270 EF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER--RICEAKELGEVIVS 324
                +    VFE      KKR      R ++Y   I+   + R  +  EA  L   +++
Sbjct: 247 ALAKDEKACQVFED----MKKRHC----RRDEYSYTIMIRTMGRIGKYDEAVGLFNEMIT 298

Query: 325 GKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
              T++    N L+  ++    +D   AI  F+ M+E G  P   T S L  NL      
Sbjct: 299 EGLTLNVVGYNTLMQVLAKGKMVD--KAIQVFSRMVETGCRPNEYTYS-LVLNLLV--AE 353

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            +LV +  ++  +  +     Y+ +V  L   G + EA+ +  +M    +  +   Y S+
Sbjct: 354 GQLVRLDGIVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSM 413

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +E+ C       A ++  ++   G   +   YN + S   ++ +I     LF  M + G 
Sbjct: 414 LESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGP 473

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVF 528
           +PD  TY  L+    +   +  A  +F
Sbjct: 474 SPDIFTYNILISSFGRVGEVDEAINIF 500


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/506 (22%), Positives = 214/506 (42%), Gaps = 82/506 (16%)

Query: 65  SLALGFFNWASQQPNFTH--SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
            L L  F WAS++ +F       S  S+LK L+  R    ++++L+ +K   +       
Sbjct: 78  GLGLKLFEWASKRSDFNDLLDGFSCSSLLKLLARCRVFVEVENLLETMKCKDLAPTREAL 137

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEM 180
            F++ + +      +A  +++ + ++  +  P++  CN+LL  L     ++ A K+++EM
Sbjct: 138 SFVVGAYVDSGLVNRALELYH-IAYDIHNYLPDVIACNALLNALIQQKKVEIARKVYEEM 196

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
                                               KR+    N SV   +++ G CK +
Sbjct: 197 V-----------------------------------KRDGCWDNYSV--CIMVRGLCKER 219

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +VEE  K++++   + C P+ + Y  + + +   G V     + K+ +  G  P T  Y 
Sbjct: 220 KVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYG 279

Query: 301 EFILGLIVERRICEAKELGEVIVSGK---FTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
             I GL    + C  K +  ++V  K     ++  V N+++          A +     I
Sbjct: 280 IMINGLC---KKCNFKAVDGLLVEMKERGVDVNVQVYNSIV---------DAQIKHGCKI 327

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           E G+     TL  +++N C+                     D+ +YN ++S  C  G++ 
Sbjct: 328 EVGK-----TLRWITENGCE--------------------PDITTYNTLISGSCRDGKVH 362

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  +++   ++GL P+   Y  L+   C++     A  L+  M   G   +L  Y  L+
Sbjct: 363 EAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALV 422

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                 GE++ AL +   M+E+GV PDA  Y  L+ GLC++  L AA  +  + ++ ++ 
Sbjct: 423 HGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLS 482

Query: 538 LARSILSTFMISLCRRGHFLVATKLL 563
           L   + +T +    R G    A KL 
Sbjct: 483 LDAFVSATLVDGFIRHGKLDEAKKLF 508



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 191/469 (40%), Gaps = 8/469 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++        +   + + K++K+      +  Y  +I  L +  N +    +  E+K
Sbjct: 243 YNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMK 302

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
               D+  ++ NS++      G      K    ++  G E     +   I   C + K+ 
Sbjct: 303 ERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVH 362

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L+   KR   +    +    +IH +CK  +   AF +   +  +    D +AY  
Sbjct: 363 EAEELLEHAIKR--GLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGA 420

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +       G V     V  K  + GV P  N Y   + GL  + R+  AK L   ++   
Sbjct: 421 LVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQN 480

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            ++D  V   L+ G +       A   F   I KG  P +   + + K  CK    ++ +
Sbjct: 481 LSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDAL 540

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
              + +   D+  D  +Y+ ++        L  A  +  +M ++   P+V  Y SL+   
Sbjct: 541 TCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGF 600

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR      A+K +++M +SG   N+ TY ILI  F + G+I  A   F  ML     P+ 
Sbjct: 601 CRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPND 660

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            T+  L+ GL    NL  A  V NK+ N  + +  S++  F  ++   G
Sbjct: 661 VTFNYLINGL--TNNLATA--VSNKA-NESLEIKASLMMDFFRTMISDG 704



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/427 (18%), Positives = 173/427 (40%), Gaps = 26/427 (6%)

Query: 15  QAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWA 74
             +IS S R     +   LLE       ++  LSP+ ++     ++       L  F+  
Sbjct: 349 NTLISGSCRDGKVHEAEELLEH-----AIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLF 403

Query: 75  SQQPNFTHSPL---SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131
                  H PL   +Y +++  L  + +++   +V  ++    +  D++VY  ++  L +
Sbjct: 404 IGMTEKGH-PLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCK 462

Query: 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
                 A  +  E+      +   +  +L+      G +D A K+F+    +G++   +G
Sbjct: 463 KGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVG 522

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   I  +C+   +   L+ +  ++  ++S          II G+ K   +  A K+  +
Sbjct: 523 YNAMIKGYCKFGMMNDALTCVQRMKDGDHS--PDEFTYSTIIDGYVKQNDLHNALKLFGQ 580

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  ++CKP+ + Y  +   F   G     E   ++ R  G+ P    Y   I     E +
Sbjct: 581 MVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGK 640

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVS-------------SIDPRSAIV--FFNFM 356
           I +A    E+++  +   +D   N LI  ++             S++ +++++  FF  M
Sbjct: 641 ISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTM 700

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           I  G    ++  +++   LC     +  +++   ++    F D  S+  +V  LC  GR 
Sbjct: 701 ISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEGRS 760

Query: 417 REAYGVI 423
           +E    I
Sbjct: 761 KEWKNTI 767


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 184/425 (43%), Gaps = 49/425 (11%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A  +FDE+  RG   S  G    +     ++    V       R   + +        
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER------EVVL 284
           ++I   C   R++  F  L  +  +  + D IA+  +     L G   ++      ++VL
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPL-----LKGLCADKRTSDAMDIVL 150

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN---ALIGSV 341
           ++  +LG  P    Y   + GL  E R  EA EL +++         DV++    + G  
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D   A   ++ M+++G +P + T S++   LCK    D+ +EV   +  N    +  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V   C+SG+ +EA G +++M   G++PDV  YNSLM+  C+      A+K++D M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 462 FASGCSGNLKTY-----------------------------------NILISKFSEVGEI 486
              G    + TY                                   +ILI  +++ G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ +F  M ++G+ PD  TY +++  LC+   ++ A   F + ++  +     + ++ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL 450

Query: 547 MISLC 551
           + SLC
Sbjct: 451 IHSLC 455



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 218/527 (41%), Gaps = 42/527 (7%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI----------------------- 338
            + G   +  + E   L +++V      +  V + LI                       
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 339 --------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   G+V  I  +S     A+ +F  MI++   P     ++L  +LC  +K D+  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+   +       D   +N ++   C  GR+ E+  +   M R G+ PD+  Y++L++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A KL   M + G   +  TYN LI+ + ++  +E AL LF  M   GV+PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            TY  +L+GL Q     AA E++         L  S  +  +  LC+
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 13/455 (2%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVF-----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
            Y  II +L + +   KA  V      N V  NC        NS++    S G    A+ 
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY-----NSIVHGYCSSGQPKEAIG 290

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
              +M   GVE   + +   +   C+N +  +   M D + KR   +         ++ G
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR--GLKPEITTYGTLLQG 348

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +     + E   +LD +      P+   + I+   +   G V +  +V  K R+ G+ P 
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
           T  Y   I  L    R+ +A    E ++  + +  + V N+LI S+   D    A     
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G        +++  + CK  +  E  +++ ++       D+ +Y+ ++   C +G
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA  ++  M   G+ PD   YN+L+   C+   +  A  L+ +M +SG S ++ TYN
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I++    +      A  L+  + E G   + +TY  +L GLC+      A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           D+ L     +  + +L + G    A  L   LS++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 198/473 (41%), Gaps = 44/473 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+ +L  ++ ++    VL  +  N +  +   Y  I+         ++A      
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK- 293

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K + + + P++   NSL+  L  +G    A KMFD M+ RG++     +G  +  +   
Sbjct: 294 -KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++  +LD +  R     N  V ++LI   + K  +V++A  V  ++R +   PD +
Sbjct: 353 GALVEMHGLLD-LMVRNGIHPNHYVFSILIC-AYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  V       G V +     ++     ++P    Y   I  L +  +  +AKEL   +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           +     +D    N++I S    + R   +   F+ M+  G  P + T S L    C   K
Sbjct: 471 LDRGICLDTIFFNSIIDSHCK-EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE  ++   + +     D  +YN +++  C   R+ +A  + +EM+  G+ PD+  YN 
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 441 LMEACCREDLLRPAKKLWDQMFASG---------------CSGNL--------------- 470
           +++   +      AK+L+  +  SG               C  NL               
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 471 -----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                +T+NI+I    +VG  + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y+S++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 200/462 (43%), Gaps = 19/462 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  +I +  +     +A  VF+++
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   + + P+     +++ +L   G +++A++ F++M    +    I +   I   C   
Sbjct: 401 RQ--QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 204 KLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           K  +    +L MLD     +    N       II   CK  RV E+ K+ D +     KP
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNS------IIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L 
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + S   + D    N ++ G   +    +A   +  + E G    LST + +   LCK 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N +DE + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           + + E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 499 KGVAPDATTYTSLLE----GLCQETNLQAAFEVFNKSVNHDV 536
           K  + +A+T +  L+    G  QE +      +F+  VN +V
Sbjct: 753 KHFSLEASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEV 794


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/533 (24%), Positives = 228/533 (42%), Gaps = 18/533 (3%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W+P LE  L QL LR  LSP  V  V+          A  FF WA +Q  + H+P  +  
Sbjct: 75  WSPKLEAQLRQL-LR-VLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDE 132

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS +R  +    V++ +    +   +  +  ++ S  +    + A  V + ++ + 
Sbjct: 133 MLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDG 192

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                 ICN  + VL   G +D AL+  + M   GVE     +   I   C   ++   +
Sbjct: 193 CAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAM 252

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVA 268
            M+  +   +N      +    ++   CK KRVEE   +L  +R      PD + Y ++ 
Sbjct: 253 EMIGVML--QNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLI 310

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKEL-GEVIVSG 325
                 G   E    L++    G   R ++  Y   +    +  R+ EAKE+ GE+I  G
Sbjct: 311 HGLAKHGHADEALEFLRESE--GKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG 368

Query: 326 KFTIDDDVLN---ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 DV+     + G     +   A      M +    P   T + L   LCK  K+ 
Sbjct: 369 ---CQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 383 ELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           E  E+    S  +++T  + +Y+V++      G+L+E+  V+ +M +KG  P     N L
Sbjct: 426 EAWELLNK-SEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLL 484

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + A C++     AK   +Q  + GC+ N+  +  +I  FS  G++E AL L  +M     
Sbjct: 485 IHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNR 544

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            PD  TYT +++ L ++  L+ A  +  K +N  V+       T +   C +G
Sbjct: 545 HPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 197/468 (42%), Gaps = 53/468 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           +SY++++  L   +++  +  +L++++ +  +  D   Y  +I  L +  +  +A     
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLR 327

Query: 144 EV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           E    +F  +++G    ++++     +G +  A ++  EM  +G +   + +   +  FC
Sbjct: 328 ESEGKRFRVDEVG---YSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFC 384

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +L Q   M+  + K  N     +V    +++G CK  +  EA+++L++       P 
Sbjct: 385 RIGELDQARKMMKHMYK--NDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPS 442

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y +V   F+  G + E   V+ +  + G  P T +    I  L  +R+  EAK+  E
Sbjct: 443 DITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFME 502

Query: 321 VIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
              S   TI+      +I   S   D  SA+   + M    R P + T + +   L K+ 
Sbjct: 503 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKK- 561

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
                                             GRL+EA G++++M  +G+ P    Y 
Sbjct: 562 ----------------------------------GRLKEATGLVEKMLNRGVLPTPVTYR 587

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKT-YNILISKFSEVGEIEGALRLFHNMLE 498
           +++   C +  L     L ++M A      +K+ YN ++ K    G++  A  L + +L 
Sbjct: 588 TVIHRYCEKGNLEDLLNLLEKMLARQ---EMKSAYNQVVEKLCAFGKLNEAYSLLYKILR 644

Query: 499 KGVAPDATTYTSLLEG-LCQETNLQA---AFEVFNKSVNHDVMLARSI 542
                DA T   L+E  L +   LQA   A  +F +++  DV L + +
Sbjct: 645 TASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQKV 692



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           RSA+   + M + G  P +S + N++ N L    + D+ +E  + +       D+ +YN 
Sbjct: 179 RSAMRVLHLMQKDGCAPDIS-ICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNC 237

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-S 464
           ++  LC + R+ +A  +I  M + G  PD   Y ++M   C+E  +   + L  +M   +
Sbjct: 238 LIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA 297

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +  TYN+LI   ++ G  + AL        K    D   Y++++   C    +  A
Sbjct: 298 GLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEA 357

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKS 582
            E+  + ++          ST +   CR G    A K+++ +  +    ++ +H  LL  
Sbjct: 358 KEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNG 417

Query: 583 LADAREVEMAIE 594
           L    +   A E
Sbjct: 418 LCKVGKTSEAWE 429



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 3/200 (1%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           E ++ M+S L  +     A  V++ M R+G+      +  LM +  R   LR A ++   
Sbjct: 128 EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHL 187

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC+ ++   N+ ++     G ++ AL     M   GV PD  TY  L++GLC    
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--- 577
           +  A E+    + +     +    T M  LC+         LL+ + +D G     V   
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 578 ILLKSLADAREVEMAIEHIK 597
           +L+  LA     + A+E ++
Sbjct: 308 VLIHGLAKHGHADEALEFLR 327


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 208/477 (43%), Gaps = 18/477 (3%)

Query: 66  LALGFFNWASQQPNFTH--SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           + L FF+WAS+Q N  +  +  S  S+L+ L+  R  + ++S+LK +K   +      + 
Sbjct: 46  MGLEFFHWASKQSNCGNYLNEFSCSSLLRLLARRRLFSEVESLLKIMKSKDLMPTREAFS 105

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMS 181
            +I          +A   F           P++  CNSLL VL   G ++ A K++DEM 
Sbjct: 106 LVISVFADCGLVDRALE-FYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMV 164

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            R  E       + +   C+  K+     ++ E R     M N  V    +I G+CK   
Sbjct: 165 DRNGEVDNYTVCIMVKGLCKEGKVEDGWKLI-EKRWGRGCMPN-IVFYNTLIDGYCKKGD 222

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS--VFEREVVLKKKRKLGVAPRTNDY 299
            E A  +  EL+++   P    Y  +   F   G   V ++ +V   +R L V+     Y
Sbjct: 223 TERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHI--Y 280

Query: 300 REFILGLIVER-RICEAKELGEVIVSGKFTIDDDV--LNALI-GSVSSIDPRSAIVFFNF 355
              I        RI  A  +G +I SG    D D+   N LI GS S  +   A      
Sbjct: 281 NNIIDAQFKHGCRIEAADTVGWMIKSG---CDPDMATYNILITGSCSCGEVHKAEQLLEQ 337

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
            I++G +P   + + L  N CK+ +    +++   +S   +  D+ +Y  ++  L  +G 
Sbjct: 338 AIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGE 397

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           +  A  V  +M  KG+ PD + YN LM   C++  L  AK L  +M     + +      
Sbjct: 398 VDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITAT 457

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           L+  F   G+ E A +LF   +EKG+ P    Y ++++G C+   ++ A   F + +
Sbjct: 458 LVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMI 514



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 136/339 (40%), Gaps = 41/339 (12%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           S++ VL+ HG     +VE A KV DE+  R  + D     I+ +     G V +   +++
Sbjct: 142 SLLNVLVKHG-----KVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIE 196

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
           K+   G  P    Y                                   N LI G     
Sbjct: 197 KRWGRGCMPNIVFY-----------------------------------NTLIDGYCKKG 221

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D   A V F  +  KG +PT+ T   +    CK+ K + + ++   +S       +  YN
Sbjct: 222 DTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYN 281

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++      G   EA   +  M + G DPD++ YN L+   C    +  A++L +Q    
Sbjct: 282 NIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKR 341

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   N  +Y  LI  + + GE   AL L   M E+G  PD  TY +L+ GL     +  A
Sbjct: 342 GLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVA 401

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             V NK V   V+   +I +  M  LC++G    A  LL
Sbjct: 402 LTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLL 440



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 145/381 (38%), Gaps = 38/381 (9%)

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           D+   I N+++      G    A      M   G +     + + I   C   ++ +   
Sbjct: 274 DVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQ 333

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +L++  KR   ++   V    +IH +CK      A  +L ++  R  KPD + Y  +   
Sbjct: 334 LLEQAIKR--GLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHG 391

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
             + G V     V  K  + GV P  N Y   + GL  + R+  AK L   ++      D
Sbjct: 392 LIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPD 451

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             +   L+ G +   D   A   F   IEKG  P +                        
Sbjct: 452 AFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVV----------------------- 488

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
                        YN M+   C  G +++A    + M +    PD   Y+++++   + +
Sbjct: 489 ------------GYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMN 536

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            L  A +++  M    C  N+ TY +LI+ F   G+I  A + F  ML   + P+  TYT
Sbjct: 537 DLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYT 596

Query: 510 SLLEGLCQETNLQAAFEVFNK 530
            L+   C+  NL  A   F +
Sbjct: 597 ILIGCFCKGVNLTKACSFFEQ 617



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 121/575 (21%), Positives = 218/575 (37%), Gaps = 83/575 (14%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNTQKAFSVFNE 144
           +Y +I+       +   +D +L ++    + +   +Y  II +  + G   + A +V   
Sbjct: 244 TYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWM 303

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K  C+   P++   N L+    S G +  A ++ ++   RG+  + + +   I  +C+ 
Sbjct: 304 IKSGCD---PDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQ 360

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +  + L +L  ++  E       V    +IHG      V+ A  V +++  +   PD  
Sbjct: 361 GEYLRALDLL--IKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDAN 418

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y ++       G +   +V+L +     VAP        + G I      EAK+L E+ 
Sbjct: 419 IYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELT 478

Query: 323 VSGKFTIDDDVL--NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +     ID  V+  NA+I         + A++ F  MI+    P   T S +     K N
Sbjct: 479 IEK--GIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMN 536

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
                + ++ ++       ++ +Y ++++  C SG +  A    ++M    L P+V  Y 
Sbjct: 537 DLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYT 596

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF------------SEVGE-- 485
            L+   C+   L  A   ++QM    C  N  TYN L++              SE  E  
Sbjct: 597 ILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENS 656

Query: 486 ---------------------------------IEGALRLFHNMLEKGVAPDATTYTSLL 512
                                            ++ AL L   M+ KG  PD  +  +LL
Sbjct: 657 LVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALL 716

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-- 570
            GLC E   Q    V +  +N                        VA K    L + L  
Sbjct: 717 HGLCLEGRSQDWNNVISCKLNER-------------------ELQVAVKYSEKLDAFLSQ 757

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605
           G +    ++L SLAD   ++M  E +  ++ SS T
Sbjct: 758 GQTSEASLILHSLADQFSLQM--EEVDNLEASSKT 790



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 122/270 (45%), Gaps = 39/270 (14%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           VP + + ++L   L K  K +   +VY  +   +   D  +  +MV  LC  G++ + + 
Sbjct: 134 VPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWK 193

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           +I++   +G  P++ FYN+L++  C++     A  L+ ++   G    +KTY  +I+ F 
Sbjct: 194 LIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFC 253

Query: 482 EVGEIEG---------------ALRLFHN--------------------MLEKGVAPDAT 506
           + G+ E                ++ +++N                    M++ G  PD  
Sbjct: 254 KKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMA 313

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           TY  L+ G C    +  A ++  +++   ++  +   +  + + C++G +L A  LL  +
Sbjct: 314 TYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKM 373

Query: 567 SSDLGHSD---SHVILLKSLADAREVEMAI 593
            S+ GH     ++  L+  L  A EV++A+
Sbjct: 374 -SERGHKPDLVTYAALIHGLIVAGEVDVAL 402


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 195/434 (44%), Gaps = 9/434 (2%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           +I +L +G   + A  +F  +K     I P +   N ++  L  +G +DNA ++ ++M+ 
Sbjct: 226 VINALCKGGKMENAIELF--MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTV 283

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKR 241
           +GV+ +   +G  I    +     +V  +LDE+     +  N +V+    +I G+CK   
Sbjct: 284 KGVQPNLKTYGALINGLIKLNFFDKVNHILDEMI---GAGFNPNVVVFNNLIDGYCKMGN 340

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           +E A K+ D +  +   P  +    + + F     +   E  L++    G++   ++   
Sbjct: 341 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 400

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            +  L  + R   A    ++++S  F   D +L  L+ G         A   +  ++EKG
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 460

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
              +  T + L   LC   K  E   + K +       D  +YN ++   C  G++   +
Sbjct: 461 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 520

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + +EM ++G+ PD+  YN L+   C    L  A KLWD+  ASG   N+ TY I++  +
Sbjct: 521 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 580

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +   IE    LF+ +L K +  ++  Y  +++  CQ  N+ AA ++     +  ++   
Sbjct: 581 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 640

Query: 541 SILSTFMISLCRRG 554
           +  S+ +  +C  G
Sbjct: 641 ATYSSLIHGVCNIG 654



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 201/452 (44%), Gaps = 14/452 (3%)

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEM 180
            F + SL++    +K   VF  +    E   P++ +  +++  L   G ++NA+++F +M
Sbjct: 190 NFXLSSLVKANEFEKCCEVFRVMS---EGACPDVFSFTNVINALCKGGKMENAIELFMKM 246

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              G+  + + +   I   C+N +L      L E    +    N      LI +G  K  
Sbjct: 247 EKLGISPNVVTYNCIINGLCQNGRLDNAFE-LKEKMTVKGVQPNLKTYGALI-NGLIKLN 304

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAPRTN 297
             ++   +LDE+      P+ + +  + + +  MG++   E  LK K  +    + P + 
Sbjct: 305 FFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNI---EGALKIKDVMISKNITPTSV 361

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFM 356
                + G     +I  A+   E I+S   +I  D   +++  +       SA  F   M
Sbjct: 362 TLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMM 421

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + +   P+   L+ L   LCK  K  E  E++  L          + N ++  LC +G+L
Sbjct: 422 LSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKL 481

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA  +++EM  +GL  D   YN+L+   C E  +    +L ++M   G   ++ TYN L
Sbjct: 482 PEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFL 541

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           +     VG+++ A++L+      G+  +  TY  ++EG C+   ++    +FN+ ++  +
Sbjct: 542 LRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKM 601

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            L   + +  + + C+ G+   A +LL  + S
Sbjct: 602 ELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 633



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/481 (20%), Positives = 210/481 (43%), Gaps = 5/481 (1%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ I+  L  + +++    + +++ V  +  +   Y  +I  LI+     K   + +E
Sbjct: 256 VTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDE 315

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +     +    + N+L+      G I+ ALK+ D M  + +  +++     +  FC++ +
Sbjct: 316 MIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 375

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIA 263
           +    + L+E+     S+   +  +V  +H  CK  R   AF+    +  R  +P D + 
Sbjct: 376 IEHAENALEEILSSGLSIHPDNCYSV--VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 433

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
             +V    K    +   E+  +   K   A +       I GL    ++ EA  + + ++
Sbjct: 434 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTS-NALIHGLCGAGKLPEASRIVKEML 492

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                +D    NALI G  +             M ++G  P + T + L + LC   K D
Sbjct: 493 ERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLD 552

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + ++++    A+   +++ +Y +M+   C + R+ +   +  E+  K ++ +   YN ++
Sbjct: 553 DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIII 612

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           +A C+   +  A +L + M + G   N  TY+ LI     +G +E A  L   M ++G  
Sbjct: 613 KAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFV 672

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           P+   YT+L+ G C+   +  A   + + ++ ++   +   +  +   C+ G+   A  L
Sbjct: 673 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 732

Query: 563 L 563
           L
Sbjct: 733 L 733



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 191/456 (41%), Gaps = 44/456 (9%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           N T + ++ +S+++    S QI   ++ L+++  + +++       ++  L +      A
Sbjct: 355 NITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA 414

Query: 139 FSVFNEV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           F     +    F   D+   +   L+  L  DG    A +++  +  +G   S +     
Sbjct: 415 FRFTKMMLSRNFRPSDL---LLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNAL 471

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C   KL +   ++ E+ +R   M   +  A+++  GFC   +VE  F++ +E+  R
Sbjct: 472 IHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALIL--GFCNEGKVEGCFRLREEMTKR 529

Query: 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
             +PD   Y  +      +G + +   +  + +  G+    + Y   + G     RI + 
Sbjct: 530 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 589

Query: 316 KELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           + L   ++S K  ++  V N +I     + +  +A+     M  KG +P  +T       
Sbjct: 590 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT------- 642

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
                                       Y+ ++  +C  G + +A  +I EM+++G  P+
Sbjct: 643 ----------------------------YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 674

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L+   C+   +  A+  W +M +     N  TY ++I  + ++G +E A  L  
Sbjct: 675 VVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLI 734

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            M E G+ PD  TY  L  G C+  ++  AF+V ++
Sbjct: 735 KMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQ 770



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 132/273 (48%), Gaps = 3/273 (1%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           ++ +G  P + + +N+   LCK  K +  +E++  +       ++ +YN +++ LC +GR
Sbjct: 211 VMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGR 270

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L  A+ + ++M  KG+ P++  Y +L+    + +       + D+M  +G + N+  +N 
Sbjct: 271 LDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNN 330

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI  + ++G IEGAL++   M+ K + P + T  SL++G C+   ++ A     + ++  
Sbjct: 331 LIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSG 390

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLR-GLSSDLGHSDSHVILLKS--LADAREVEMA 592
           + +      + +  LC++  +  A +  +  LS +   SD  + +L      D + +E  
Sbjct: 391 LSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEAT 450

Query: 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625
               + +++ SP      +A +     +   PE
Sbjct: 451 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPE 483



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  +  KG  P+L T +    +L K N+ ++  EV++V+S      D+ S+  +++
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVIN 228

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G++  A  +  +M++ G+ P+V  YN ++   C+   L  A +L ++M   G   
Sbjct: 229 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 288

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           NLKTY  LI+   ++   +    +   M+  G  P+   + +L++G C+  N++ A ++ 
Sbjct: 289 NLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKI- 347

Query: 529 NKSVNHDVMLARSILST 545
                 DVM++++I  T
Sbjct: 348 -----KDVMISKNITPT 359


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 179/398 (44%), Gaps = 19/398 (4%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL+  L  +  I  A ++F  M   G   + + +G  I   C    +   L +  E    
Sbjct: 166 SLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQE---- 221

Query: 219 ENSMING-SVIAV----------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
              M+NG S  A+          +II   CK  + +EA ++ +E+  +  +PD + +  +
Sbjct: 222 ---MLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSAL 278

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            +     G V E +  L+     G+ P    +   I G  +   +  AKEL   + S  +
Sbjct: 279 IDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGY 338

Query: 328 TIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
             D      LI G   + +   A+  +N M+  G+ P + T   L K L    K  +  +
Sbjct: 339 EPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKK 398

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           ++ V+  +    ++   +V +  LC +G L EA  +  E+K   +  D+  +N L++  C
Sbjct: 399 LFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLC 458

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   L  A +L++++   G   ++ TY I+I+ F + G+++ A  LF  M E G  P+  
Sbjct: 459 KARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLL 518

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
           TY++LL G  +   L+   ++ +K +  DV LA SI +
Sbjct: 519 TYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYT 556



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 201/475 (42%), Gaps = 18/475 (3%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           AL+ FD M       S I F + +    +     QV S+    +K   + ++ +   + +
Sbjct: 80  ALQFFDLMMR-----SIISFNLLLGALAKIKHYSQVFSL---YKKMHLAGLSPNFFTLNI 131

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I+  C   RV E    +  +  R   PD + Y  + +   +   + E   +  + +KLG
Sbjct: 132 LINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLG 191

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGK--FTIDDD----VLNALIGSVSSID 345
             P    Y   I GL     I  A +L + +++G   + I+        N +I  +  I 
Sbjct: 192 CWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIG 251

Query: 346 P-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
             + A   FN M+++G  P + T S L   LCK     E  +  + +       D+ ++ 
Sbjct: 252 KWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFT 311

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++   C  G L  A  +   M  KG +PDV  Y  L+   C+   +  A KL+++M   
Sbjct: 312 SLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRV 371

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   ++KT+ +L+      G++  A +LF  +    V  +    +  L+GLC+   L  A
Sbjct: 372 GKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEA 431

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKS 582
            E+FN+  ++++ L     +  +  LC+      A +L   LS +    D  ++ I++  
Sbjct: 432 MELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMING 491

Query: 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
                +V+ A    + ++E+  T      + L      ++  E ++ LLH + +K
Sbjct: 492 FCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQK 546



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 180/443 (40%), Gaps = 66/443 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y S++K L +  +I+    +  +++      +   Y  +I  L +  N   A  +  E
Sbjct: 162 VTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQE 221

Query: 145 V-------KFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +         NC+   P I   N ++  L   G    A ++F+EM  +GV    + F   
Sbjct: 222 MLNGTSPYAINCK---PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSAL 278

Query: 196 IWKFCENAKLGQVLSMLDEVRK-RENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLD 250
           I   C+         M+ E +K  E  M+ G V  +     +I GFC    ++ A ++  
Sbjct: 279 IDTLCKEG-------MVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFL 331

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
            +  +  +PD I+Y ++   +    +V E   +  +  ++G  P    +   + GL +  
Sbjct: 332 SMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAG 391

Query: 311 RICEAKELGEVI----VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
           ++ +AK+L  V+    V     I    L+ L  +    +   A+  FN +        + 
Sbjct: 392 KVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFE---AMELFNELKSYNMKLDIE 448

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           + + L   LCK  K +   E+++ LS      D+ +Y +M++  C +G++  A  + Q M
Sbjct: 449 SFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMM 508

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +  G  P+                                   L TY+ L+  F +  ++
Sbjct: 509 EENGCTPN-----------------------------------LLTYSALLHGFYKNNKL 533

Query: 487 EGALRLFHNMLEKGVAPDATTYT 509
           E  ++L H M++K V+  A+ YT
Sbjct: 534 EEVVKLLHKMIQKDVSLAASIYT 556



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 130/343 (37%), Gaps = 46/343 (13%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           Y  II  L +    ++A  +FNE+    + + P++   ++L+  L  +G +  A K  + 
Sbjct: 240 YNIIIDELCKIGKWKEAKRLFNEMVD--QGVRPDVVTFSALIDTLCKEGMVIEAKKFLET 297

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSVIAVLIIHGFC 237
           M  RG+      F   I  FC    L     +   +  +  E  +I+ +V+    I+G+C
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVL----IYGYC 353

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   VEEA K+ +E+      PD   + ++ +   L G V + + +    +   V     
Sbjct: 354 KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLY 413

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG------------------ 339
               F+ GL     + EA EL   + S    +D +  N LI                   
Sbjct: 414 ICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKL 473

Query: 340 SVSSIDPR------------------SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           S   + P                   +A + F  M E G  P L T S L     K NK 
Sbjct: 474 SQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKL 533

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           +E+V++   +   D       Y ++   +    + RE   ++Q
Sbjct: 534 EEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQ 576


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 216/506 (42%), Gaps = 66/506 (13%)

Query: 42  GLRDSLSPSLVARVI----NPYLLTHHSLALGFF--NWASQ-------------QPNFTH 82
           G R S + SLV +++     P   T ++L  G F  N AS+             QP+   
Sbjct: 164 GNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDL-- 221

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
             ++Y  ++  L     I+   S+LK+++  KI     +Y  II +L   KN   A ++F
Sbjct: 222 --VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLF 279

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            E+  + + I P +   NSL+  L + G   +A ++  +M  R +  + + F   I  F 
Sbjct: 280 TEM--DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKP 259
           +  KL +   + DE+ KR    I+  +     +I+GFC   R++EA  + + +  ++C P
Sbjct: 338 KEGKLVEAEKLYDEMIKRS---IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + + Y  + + F     V E   + ++  + G+   T  Y   I G   + R C+     
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFF-QARECD----- 448

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
                                       +A + F  M+  G +P + T S L   LC   
Sbjct: 449 ----------------------------NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K +  + V++ L  +    D+ +YN+M+  +C +G++ + + +   +  KG+ P+V  Y 
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           ++M   CR+ L   A  L+ +M   G   +  TYN LI      G+   +  L   M   
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAF 525
               DA+T   L+  +  +  L  +F
Sbjct: 601 RFVGDAST-IGLVTNMLHDGRLDKSF 625



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 184/415 (44%), Gaps = 9/415 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L        A+ + D M  +G +   + +G+ +   C+   +   LS+L   +K
Sbjct: 190 NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL---KK 246

Query: 218 RENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E   I  G VI   II   C  K V +A  +  E+  +  +P+ + Y  +       G 
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL-- 334
             +   +L    +  + P    +   I   + E ++ EA++L + ++  K +ID D+   
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSIDPDIFTY 364

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           ++LI      D    A   F  MI K   P + T + L K  CK  + DE +E+++ +S 
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                +  +Y  ++     +     A  V ++M   G+ PD+  Y+ L++  C    +  
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET 484

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  +++ +  S    ++ TYNI+I    + G++E    LF ++  KGV P+  TYT+++ 
Sbjct: 485 ALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 544

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           G C++   + A  +F +      +      +T + +  R G    + +L+R + S
Sbjct: 545 GFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 157/366 (42%), Gaps = 7/366 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG  P        + G     RI +A  L   +V   +  D    N LI  + 
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+ KG  P L T   +   LCKR   D  + + K +        + 
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YN ++  LC    + +A  +  EM  KG+ P+V  YNSL+   C       A +L   M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T++ LI  F + G++  A +L+  M+++ + PD  TY+SL+ G C    L
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A  +F   ++ D        +T +   C+        +L R +S    +G++ ++  L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAE--LFASLSSSSYPEPILLLLHALQEK 637
           +     ARE + A   I + Q  S  +L +I     L   L ++   E  L++   LQ  
Sbjct: 438 IHGFFQARECDNA--QIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495

Query: 638 CLDSEI 643
            ++ +I
Sbjct: 496 KMEPDI 501



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%)

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           I  ++ +    A+  F  M++    P++   S L   + K NK D ++ + + +      
Sbjct: 54  INRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 113

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +Y+++++  C   +L  A  V+ +M + G +PD+   NSL+   C  + +  A  L
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSL 173

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             QM   G   +  T+N LI           A+ L   M+ KG  PD  TY  ++ GLC+
Sbjct: 174 VGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK 233

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
             ++  A  +  K     +     I +T + +LC
Sbjct: 234 RGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 24/220 (10%)

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           NL  ++ K      +VE  K+LSA      M  +++++S             + ++M+  
Sbjct: 67  NLFGDMVKSRPFPSIVEFSKLLSA---IAKMNKFDLVIS-------------LGEQMQNL 110

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G+  ++  Y+ L+   CR   L  A  +  +M   G   ++ T N L++ F     I  A
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI- 548
           + L   M+E G  PD+ T+ +L+ GL +      A  + ++ V   V   +  L T+ I 
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMV---VKGCQPDLVTYGIV 227

Query: 549 --SLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
              LC+RG   +A  LL+ +    G  +  V++  ++ DA
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQ--GKIEPGVVIYNTIIDA 265


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 200/483 (41%), Gaps = 49/483 (10%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  I+   S +    A D    + K    TL++S+Y  II +  Q  N ++A ++ 
Sbjct: 378 SLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 437

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIW 197
            E++    D    I ++++     DGY         L +F  +   G   + + +G  I 
Sbjct: 438 REMEEEGIDAPIAIYHTMM-----DGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLIN 492

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + +  K+ + L  +  V K E    N    + ++I+GF K K    AF V +++     
Sbjct: 493 LYTKVGKISKALE-VSRVMKEEGVKHNLKTYS-MMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--------------------------- 290
           KPD I Y  +   F  MG++      +K+ +KL                           
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
                   G  P  + +   I GL+ +R+  E   L E+ ++G    +      + G  S
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI--LDEMTLAGVSANEHTYTKIMQGYAS 668

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             D   A  +F  +  +G    + T   L K  CK  +    + V K +SA +   +   
Sbjct: 669 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 728

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++      G + EA  +IQ+MK++G+ PD+  Y S + AC +   +  A +  ++M 
Sbjct: 729 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 788

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G   N+KTY  LI  ++     E AL  +  M   G+ PD   Y  LL  L    ++ 
Sbjct: 789 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIA 848

Query: 523 AAF 525
            A+
Sbjct: 849 EAY 851



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 172/423 (40%), Gaps = 6/423 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I  SL+   A    +D AL    +M   G+E S + + V +  F +           DE 
Sbjct: 346 IYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEA 405

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            KR +  +N S+    II+  C+   +E A  ++ E+           Y  + + + ++ 
Sbjct: 406 -KRIHKTLNASIYGK-IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVA 463

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  VV K+ ++ G  P    Y   I       +I +A E+  V+       +    +
Sbjct: 464 DEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYS 523

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I G V   D  +A   F  M+++G  P +   +N+    C     D  ++  K +   
Sbjct: 524 MMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R +  V   M+R G  P V  +N L+     +   R A
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEK---RQA 640

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ VG+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 641 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 700

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 701 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760

Query: 575 SHV 577
            H 
Sbjct: 761 IHT 763



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/416 (18%), Positives = 164/416 (39%), Gaps = 47/416 (11%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG+ +  +     + +     + +R R   +   S I   +IH +  G+ ++EA   + +
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRAR--GITPTSRIYTSLIHAYAVGRDMDEALSCVRK 369

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI---- 307
           ++    +   + Y ++   F   G     +    + +++      + Y + I        
Sbjct: 370 MKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           +ER     +E+ E  +     I   +++   G     D +  +V F  + E G  PT+ T
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMD---GYTMVADEKKGLVVFKRLKECGFTPTVVT 486

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              L     K  K  + +EV +V+       ++++Y++M++          A+ V ++M 
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546

Query: 428 RKGLDPDVSFYNSLMEACC-----------------------------------REDLLR 452
           ++G+ PDV  YN+++ A C                                   +   +R
Sbjct: 547 KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            + +++D M   GC   + T+N LI+   E  +   A+ +   M   GV+ +  TYT ++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIM 663

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +G     +   AFE F +  N  + +        + + C+ G    A  + + +S+
Sbjct: 664 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSA 719



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 57/317 (17%), Positives = 122/317 (38%), Gaps = 17/317 (5%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           H   KS  + R +   D + +   V  +      +  +I  L++ +   +A  + +E+  
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTV----HTFNGLINGLVEKR---QAVEILDEMTL 649

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                       ++   AS G    A + F  + + G++     +   +   C++ ++  
Sbjct: 650 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 709

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
            L++  E+  R  ++   S +  ++I G+ +   V EA  ++ +++    KPD   Y   
Sbjct: 710 ALAVTKEMSAR--NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSF 767

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAKELGEVIV 323
                  G +      +++   LGV P    Y   I G     + E+ +   +E+  + +
Sbjct: 768 ISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGI 827

Query: 324 SGKFTIDDDVLNALIGSVSSIDP---RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                +   +L +L+   S  +       +     M+E G +  + T  + SK LCK   
Sbjct: 828 KPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWSKCLCKIEA 887

Query: 381 S-DELVEVYKVLSANDY 396
           S  EL E  +     D+
Sbjct: 888 SGGELTETLQKTFPPDW 904


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 202/446 (45%), Gaps = 18/446 (4%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FN 148
           +LK  S+  ++  + SV+ + ++    +    +  ++ S  +     +A  V + ++ F 
Sbjct: 181 LLKDKSMVNEVEEVYSVMIKCQIRPTIV---TFNTMMDSRCKEGEVGRAVEVLDVMRMFG 237

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
           C D      N L+  L+  G  D A ++ ++MS  G++ S   +   I  FC+       
Sbjct: 238 C-DPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKK------ 290

Query: 209 LSMLDEVRKRENSMIN-GSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
             M +E       M+  G++  V+    I++  C+  RV +A + LD +   +  PD ++
Sbjct: 291 -EMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVS 349

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   +  +G+  E  ++  + R   + P    Y   I G      +  AK + + ++
Sbjct: 350 YNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMI 409

Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                 D      L+ G     +   A   F+ M+ +G  P     +       K     
Sbjct: 410 KHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPS 469

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +   + + + A  +  D+ +YNV+++ LC  G   +A  ++Q+M+ +G+ PD   Y S++
Sbjct: 470 KAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSII 529

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
            A     LLR A++++  M   G   ++ TY +LI  ++  G ++ A + F  M +KGV+
Sbjct: 530 HAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVS 589

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVF 528
           P+  TY +L+ GLC+E  +  A+ +F
Sbjct: 590 PNVITYNALIYGLCKENMMDVAYNLF 615



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 134/612 (21%), Positives = 248/612 (40%), Gaps = 120/612 (19%)

Query: 48  SPSLVARVINPYLLTHHSL-ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
            P  + RV+N   + H  L AL FF W  +QPNF  S  ++ +IL  L+ +  +     V
Sbjct: 50  QPEFLLRVLNS--VKHRPLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWV 107

Query: 107 LK---QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
           ++   +VKV+   LD      ++  +  G+N++               +  ++ + L+ V
Sbjct: 108 MEKAIEVKVDGGVLD------VLVGIGCGRNSE---------------VSVKLLDLLIQV 146

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA-KLGQVLSMLDEVRKRENSM 222
            A    ++  L +F +M + G+            + C    KL +  SM++EV +  + M
Sbjct: 147 FAKKLILEKCLMVFYKMVNNGLLPDV--------RNCNRVLKLLKDKSMVNEVEEVYSVM 198

Query: 223 INGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           I   +   ++     +   CK   V  A +VLD +R+  C P+ ++Y ++       G  
Sbjct: 199 IKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEF 258

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              + ++++   LG+    + Y   I G   +    EA +L                   
Sbjct: 259 DRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRRE---------------- 302

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                             M+ +G +PT+ T + +  +LC+  +  +      V+   D  
Sbjct: 303 ------------------MLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLM 344

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ SYN ++      G   EA  +  E++ K L P V  YN+L++  CR   L  AK +
Sbjct: 345 PDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGM 404

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS------- 510
            D M   G   ++ T+ IL+  F ++G +  A  LF  ML +G+ PD   YT+       
Sbjct: 405 KDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464

Query: 511 ----------------------------LLEGLCQETNLQAAFEVFNK----SVNHDVML 538
                                       L+ GLC+  N   A E+  K     +  D + 
Sbjct: 465 LGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVT 524

Query: 539 ARSILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597
             SI+   +IS L R+   + +  L +G+   +    ++ +L+ S A    ++ A ++  
Sbjct: 525 YTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVV---TYTVLIHSYAVRGRLDFAKKYFD 581

Query: 598 WIQES--SPTML 607
            +Q+   SP ++
Sbjct: 582 EMQDKGVSPNVI 593


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 138/600 (23%), Positives = 267/600 (44%), Gaps = 68/600 (11%)

Query: 30  WTPLLEQTLHQLGLRDSLSPS--LVARVI---------NPYLLTHHSL-------ALGFF 71
           + P + +TL  L  R+S++ +  L +R++            LL   SL       AL  F
Sbjct: 196 FVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVF 255

Query: 72  NWA---SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS-VYRFIIP 127
           + A     +P+     L+  +  K+L+L+      +S+L+++K  K+ + S   Y  +I 
Sbjct: 256 SRAIERGAEPDSLLYSLAVQACCKTLNLA----MANSLLREMKEKKLCVPSQETYTSVIL 311

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
           + ++  N + A    +E+  +   +      SL+     +  + +AL +F +M + G   
Sbjct: 312 ASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSP 371

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAF 246
           +++ F V I +F +N   G++   L+  +K E+  +  SV  V  II G+ KG++ EEA 
Sbjct: 372 NSVTFSVLIERFSKN---GEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEAL 428

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           K+ DE         FI   I++   K  G + +   +L+K    G+ P    Y   +L  
Sbjct: 429 KLFDESFETGLANVFICNTILSWLCK-QGKIDKATELLRKMESRGIGPNVVSYNNVMLAH 487

Query: 307 IVERRICEAK-------ELG--------EVIVSGKFTIDDD-----VLNALIGSVSSIDP 346
             ++ +  A+       E G         +++ G F   D+     V+N +  S   ++ 
Sbjct: 488 CRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNG 547

Query: 347 RSAIVFFNFMIEKGRVPTL-STLSNL--SKNLC--------------KRNKSDELVEVYK 389
                  N + + G+       L+N+   K  C              K  + D  V  Y+
Sbjct: 548 VVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYE 607

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            + AN    ++ +Y  ++  LC + R+ +A  +  EMK KG+  D+  Y +L+   C++ 
Sbjct: 608 EMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKS 667

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A  L+ ++   G + +   YN LIS F  +G +  AL L+  ML+ G+  D  TYT
Sbjct: 668 NMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYT 727

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L++GL +E NL  A +++ +     ++    + +  +  L ++G F+   K+   +  +
Sbjct: 728 TLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKN 787



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 197/474 (41%), Gaps = 87/474 (18%)

Query: 111 KVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           K+  + L  SV+    II   ++G+  ++A  +F+E  F        ICN++L+ L   G
Sbjct: 398 KMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE-SFETGLANVFICNTILSWLCKQG 456

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC--ENAKLGQVL--SMLDEVRKRENSMIN 224
            ID A ++  +M  RG+  + + +   +   C  +N  L + +  +ML++  K  N   +
Sbjct: 457 KIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYS 516

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
                 ++I G          FK  DE  + E     +  ++ +   ++ G V++   ++
Sbjct: 517 ------ILIDG---------CFKNHDEQNVLE-----VVNQMTSSNIEVNGVVYQ--TII 554

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
               K+G   +T+  RE +  +I E+R C +       +S    ID        G +   
Sbjct: 555 NGLCKVG---QTSKARELLANMIEEKRFCVS------CMSYNSIID--------GFIKEG 597

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           +   A+  +  M   G  P + T ++L   LCK N+ D+ +E+   +       D+ +Y 
Sbjct: 598 EMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYG 657

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDP------------------------------- 433
            ++   C    +  A  +  E+  +GL+P                               
Sbjct: 658 ALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKD 717

Query: 434 ----DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
               D+  Y +L++   +E  L  A  L+ +M A G   +   Y ++++  S+ G+    
Sbjct: 718 GLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKV 777

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           +++F  M +  V P+   Y +++ G  +E NL  AF +      HD ML + IL
Sbjct: 778 VKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL------HDEMLDKGIL 825



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 133/300 (44%), Gaps = 27/300 (9%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           ++ +  +LGV P        +  L+    I EAKEL   +V+     D+     L+  S+
Sbjct: 184 IVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASL 243

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM- 400
               P  A+  F+  IE+G  P  S L +L+   C         +   +  AN    +M 
Sbjct: 244 REEKPAEALEVFSRAIERGAEPD-SLLYSLAVQAC--------CKTLNLAMANSLLREMK 294

Query: 401 ---------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                    E+Y  ++      G + +A     EM   G+  +V    SL+   C+ + L
Sbjct: 295 EKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDL 354

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A  L+ +M   G S N  T+++LI +FS+ GE+E AL  +  M   G+ P      ++
Sbjct: 355 GSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTI 414

Query: 512 LEGLCQETNLQAAFEVFNKSVN---HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           ++G  +    + A ++F++S      +V +  +ILS     LC++G    AT+LLR + S
Sbjct: 415 IQGWLKGQKHEEALKLFDESFETGLANVFICNTILSW----LCKQGKIDKATELLRKMES 470



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 4/211 (1%)

Query: 327 FTIDDDVLNALIGSVSSIDPRS--AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           F ++    N L+ + S  D ++  A+   N M+E G +P +  ++     L +RN   E 
Sbjct: 158 FEVNSRAFNYLLNAYSK-DRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEA 216

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+Y  + A     D  +  +++       +  EA  V      +G +PD   Y+  ++A
Sbjct: 217 KELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQA 276

Query: 445 CCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           CC+   L  A  L  +M     C  + +TY  +I    + G +E A+R    M+  G++ 
Sbjct: 277 CCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISM 336

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +    TSL+ G C+  +L +A ++F K  N 
Sbjct: 337 NVVAATSLITGHCKNNDLGSALDLFYKMENE 367


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 158/339 (46%), Gaps = 10/339 (2%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREVV 283
           ++IA  ++ GFC+ KR +EA  +L   R  E  C PD  +Y I+ +     G   + + +
Sbjct: 112 AIIASHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYNILLKSLCNQGKSGQADNL 170

Query: 284 LKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           L+   + G   +P    Y   I G   E  + +A +L + +V      D    N+++ ++
Sbjct: 171 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 230

Query: 342 S---SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               ++D   A  F   M+ K  +P   T +NL        +  E V V+K +  +    
Sbjct: 231 CKARAMDKAEA--FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 288

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ + ++++  LC  G+++EA  V   M  KG +PDV  YN ++     +  L     L+
Sbjct: 289 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 348

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D M   G + +  T+N+ I  ++  G ++ A+ +F+ M + GV PD  TY +++  LC+ 
Sbjct: 349 DLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI 408

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             +  A E FN+ ++  V   +   +  +   C  G  L
Sbjct: 409 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILL 447



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 145/370 (39%), Gaps = 25/370 (6%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           LAL FF    +      + ++ H +       R   A+D +L +        D   Y  +
Sbjct: 95  LALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNIL 154

Query: 126 IPSLI-QGKNTQKAFSVFNEVKFNCEDIGPEIC-------NSLLAVLASDGYIDNALKMF 177
           + SL  QGK+ Q      N ++   E  G  +C       N+++     +G ++ A  +F
Sbjct: 155 LKSLCNQGKSGQAD----NLLRMMAE--GGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 208

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE-VRKR---ENSMINGSVIAVLII 233
            EM  RG+    + +   +   C+   + +  + L + V KR    N   N       +I
Sbjct: 209 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN------LI 262

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +G+    + +EA +V  E+R     PD +   ++       G + E   V       G  
Sbjct: 263 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 322

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVF 352
           P    Y   + G   +  + +  +L ++++      D    N  I + ++      A++ 
Sbjct: 323 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMII 382

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           FN M + G  P + T   +   LC+  K D+ +E +  +       D  +YN ++   CT
Sbjct: 383 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 442

Query: 413 SGRLREAYGV 422
            G L +  G+
Sbjct: 443 HGILLKTQGI 452


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 217/503 (43%), Gaps = 30/503 (5%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           +L Q++   I  ++ +Y  +I S  +   T  A  + ++++ +      E  NS ++ L 
Sbjct: 204 LLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALC 263

Query: 166 SDGYIDNALKMFDEMS---HRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             G I  A ++F +M      G+   + I + + +  FC+   L +  +++D +++  N 
Sbjct: 264 GSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN- 322

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
            IN     + ++ G  +  ++ EA+ VL E+     +PD  +Y IV +     G + +  
Sbjct: 323 FINLESYNIWLL-GLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDAR 381

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
           +++    + G+ P T  Y   + G   + ++ EA  L   ++S   + +    N L+ S+
Sbjct: 382 MLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSL 441

Query: 342 SSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK----------- 389
                 S A      M EKG      T + +   LC   + D+ +E+             
Sbjct: 442 WKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALG 501

Query: 390 ------------VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                        +S      D+ +Y+ ++S LC +GRL +A     EM  KGL PD + 
Sbjct: 502 NLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAI 561

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y++ + + CRE  +  A ++   M   GC+  L+TYN LI       +I     L   M 
Sbjct: 562 YDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMR 621

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           EKGV+PD  TY  +L  LC+   +  A  V ++ +   +    S     + + C+   F 
Sbjct: 622 EKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFK 681

Query: 558 VATKLLRGLSSDLGHSDSHVILL 580
            + ++     +  GH ++   L+
Sbjct: 682 ASHEVFEIALNVCGHKEALYTLM 704



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 192/437 (43%), Gaps = 30/437 (6%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+ +L   G++++A ++FD+M  RG E +   FG+ +  +C      + L +L ++R 
Sbjct: 151 NLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRT 210

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++  +V+   +I  FCK  +  +A K++D++R     P    +          G +
Sbjct: 211 M--GILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKI 268

Query: 278 FEREVVLKKKR---KLGVA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            E   + +  +   +LG+  P    Y+  ++G   E  + EAK L + +      I+ + 
Sbjct: 269 LEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLES 328

Query: 334 LNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N  L+G + +     A +    M+  G  P + + + +   LCK     +   +  ++ 
Sbjct: 329 YNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMI 388

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            N    D  +Y+ ++   C+ G++ EA  ++ EM      P+    N L+ +  +E  + 
Sbjct: 389 RNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRIS 448

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA---------- 502
            A+ L  +M   G   +  T NI+I+     G+++ A+ + + M   G A          
Sbjct: 449 EAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFI 508

Query: 503 -------------PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
                        PD  TY++++ GLC+   L  A + F + ++  +    +I  TF+ S
Sbjct: 509 GLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHS 568

Query: 550 LCRRGHFLVATKLLRGL 566
            CR G    A ++L+ +
Sbjct: 569 FCREGKISSAFQVLKDM 585



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 4/207 (1%)

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
           + P++   + L K+  + N+ + +  +YK +       +  ++N+++  LC SG L +A 
Sbjct: 108 KQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDAR 167

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +  +M  +G +P+   +  L+   CR  L     +L  QM   G   N   YN LIS F
Sbjct: 168 ELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSF 227

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF-NKSVNHDVMLA 539
            + G+   A +L   M E G+ P   T+ S +  LC    +  A  +F +  ++ ++ L 
Sbjct: 228 CKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLP 287

Query: 540 RSILSTF---MISLCRRGHFLVATKLL 563
              + T+   ++  C+ G    A  L+
Sbjct: 288 HPNVITYKLMLMGFCKEGMLEEAKTLV 314



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 129/332 (38%), Gaps = 42/332 (12%)

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVF 352
           P    Y   +   I E R+     L + +V  + + +    N LIG +  S     A   
Sbjct: 110 PSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDAREL 169

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
           F+ M  +G  P   T   L +  C+   + + +E+   +       +   YN ++S  C 
Sbjct: 170 FDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCK 229

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC--------------------------- 445
            G+  +A  ++ +M+  GL P V  +NS + A                            
Sbjct: 230 EGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHP 289

Query: 446 ------------CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
                       C+E +L  AK L D M  +    NL++YNI +      G++  A  + 
Sbjct: 290 NVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVL 349

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             ML  G+ PD  +Y  +++GLC+   L  A  +    + + ++      ST +   C +
Sbjct: 350 KEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSK 409

Query: 554 GHFLVATKLLRGLSSDLGHSDSHV--ILLKSL 583
           G    A  LL  + S+    +++   +LL SL
Sbjct: 410 GKVFEANNLLHEMISNNCSPNTYTCNVLLHSL 441


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/575 (22%), Positives = 237/575 (41%), Gaps = 78/575 (13%)

Query: 17  IISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ 76
           + +A+   R     +PLL+   +  GLR +L+ +  + V+             F   A+ 
Sbjct: 51  VCAAARILRSHASPSPLLDLADYLRGLRLTLTAAEASEVVKALYGDPPLALAFFRFAAAS 110

Query: 77  QPNFTHSPLSYHSILKSLSLSR--------------------QINAIDS----------- 105
            P F H   SY+ IL  L  +R                     I+ I+            
Sbjct: 111 LPGFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEM 170

Query: 106 --VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
              L+      + L    Y+ I+ + ++ +   K F V+ E++     +     N LL  
Sbjct: 171 ERCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDA 230

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           LA  G +D A ++F++M  +        + + I    +  +  + LS  DE+  +     
Sbjct: 231 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK----- 285

Query: 224 NGSVIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
            G V+ ++    II    K K V++   VL ++   +C+P+   Y I  +     G +  
Sbjct: 286 -GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHR 344

Query: 280 REVVL----------------KKKRKLGVAPRTN-------------DYREFILGLIV-- 308
              VL                K   K G A   +             D   F+  L V  
Sbjct: 345 LNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLC 404

Query: 309 -ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLS 366
              +  EA +L  ++       D  + N +  ++  +   S I   F+ M   G +P + 
Sbjct: 405 NAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVF 464

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + +  +  +    D+  E+++V+ A+    D+ +YN +++ L   G L EA+ + +EM
Sbjct: 465 TYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 524

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           + KG DPDV  Y+ L+E   + + +  A  L+D+M + GC+ N+ TYNIL+      G+ 
Sbjct: 525 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 584

Query: 487 EGALRLFHNMLEKGVAPDATTYTSL--LEGLCQET 519
           E A +L+  M ++G+ PD+ TY+ L  LE   Q T
Sbjct: 585 EEAHKLYETMKQQGLIPDSITYSILERLESRSQRT 619



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 34/234 (14%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  +V     S  + + + V +EM+RKG   D+  YN L++A  +  ++  A ++++ M
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  +  TY ILI    + G     L  F  M+ KG   +   + +++E L +   +
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 307

Query: 522 QAAFEVFNKSVNHDV--------------------------------MLARSILSTFMIS 549
                V +K V +D                                  + RSI S  + S
Sbjct: 308 DKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKS 367

Query: 550 LCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           LC+ GH   A  +   +  S + G  D+ V +L+ L +A +   AI+ +  + E
Sbjct: 368 LCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 421


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 211/497 (42%), Gaps = 50/497 (10%)

Query: 81  THSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           T S + ++ IL SL  S +       S+ ++++ + IT D   +  +I           A
Sbjct: 63  TSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFA 122

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           FS+  ++     +      N+L+  L  +G +  AL   D +   G       +G  I  
Sbjct: 123 FSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLING 182

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIREC 257
            C   K+G+  + L  +RK +  ++  +V+    II   CK K V +A+++  ++  ++ 
Sbjct: 183 LC---KIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKI 239

Query: 258 KPDFIAYRIVAEEFKLMGSVFE-----REVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
            PD + +  +   F ++G + E     RE+VLK      + P    +   +  L  E  +
Sbjct: 240 SPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKN-----INPDYYTFNILVDALCKEGNL 294

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
             AK +  V                                  M+++G +P + T S+L 
Sbjct: 295 KGAKNMLVV----------------------------------MMKEGVMPNVVTYSSLM 320

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
              C  N+ ++   V   +S      +  SY  M++  C    + EA  +  +M+ KG+ 
Sbjct: 321 DGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIA 380

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD   YNSL++  C+   +  A +L D+M  +G   N+ TYN LI    +   ++ A+ L
Sbjct: 381 PDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIAL 440

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              + ++G+ PD  T+  L+ GLC+   L+ A +VF   ++    +     +  +  LC+
Sbjct: 441 VKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCK 500

Query: 553 RGHFLVATKLLRGLSSD 569
            G F  A  LL  +  +
Sbjct: 501 EGLFDEAEALLSKMDDN 517



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 176/406 (43%), Gaps = 23/406 (5%)

Query: 64  HSLALGFFNWASQQPNFTH-SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
           H LALGF           H    SY +++  L    +      +L+++    + ++  +Y
Sbjct: 163 HVLALGF-----------HLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMY 211

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM 180
             II SL + K    A+ +++++    + I P++   ++L+      G ++ A  +F EM
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMI--AKKISPDVVTFSALIYGFCIVGQLEEAFGLFREM 269

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             + +      F + +   C+   L    +ML  V  +E  M N    + L+  G+C   
Sbjct: 270 VLKNINPDYYTFNILVDALCKEGNLKGAKNML-VVMMKEGVMPNVVTYSSLM-DGYCLVN 327

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +V +A  VL+ +      P+  +Y  +   F  +  V E   +    +  G+AP    Y 
Sbjct: 328 QVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYN 387

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMI 357
             I GL    RI  A EL + +       +    N LI ++     +D   AI     + 
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVD--QAIALVKKIK 445

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G  P + T + L   LCK  +     +V++ L +  Y  +  +YN+MV+ LC  G   
Sbjct: 446 DQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFD 505

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           EA  ++ +M   G+ PD   Y +L++A   +D    A+KL  +M A
Sbjct: 506 EAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIA 551


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 135/581 (23%), Positives = 249/581 (42%), Gaps = 33/581 (5%)

Query: 35  EQTLHQLGL---RDSLSPS--LVARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYH 88
           +  LH+L L   RD   PS  L+   I  Y+ +    LA   FN   ++ N+  + L+ +
Sbjct: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN-KMKRLNYRPNLLTCN 179

Query: 89  SILKSLS---------LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +++ SL          L+RQ+   DS+   V  N  + +  +Y + + S ++      A 
Sbjct: 180 TLMNSLVRYPSSSSILLARQV-LKDSIKLGVVPNTNSFNILIYGYCLESKVKD-----AL 233

Query: 140 SVFNEV-KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
              N++ +F C    P+    N++L  L     +  A  +  +M  +G+  +   + + +
Sbjct: 234 DWVNKMSEFGCV---PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLV 290

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             +C    L +   ++ E+  R N+++       ++++GFC   +++EAF++ DE+    
Sbjct: 291 CGYCRLGLLKEATKVI-EIMTR-NNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMN 348

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             PD + Y  + +         E   ++++  K GV      Y   +  +  +  + EA 
Sbjct: 349 VLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEAT 408

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNL 375
              + +     + D    N LIG+         A    + M  KG      TL+ +   L
Sbjct: 409 TTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCL 468

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C   K DE   +    S   Y  D  SY +++       +   A  +  EMK + + P  
Sbjct: 469 CVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPST 528

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YNS++   C+   +  A    ++M  +G   +  TYNI+I  F   G +E A +  + 
Sbjct: 529 ITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNE 588

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           M+E    PD  T   LL GLC+E  L+ A ++FN  V+    +     +T + SLC+ G 
Sbjct: 589 MIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGK 648

Query: 556 FLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIE 594
           F  A  LL  + +     D +   +++ +L DA  ++ A E
Sbjct: 649 FENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEE 689


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 179/413 (43%), Gaps = 6/413 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL V+A     D  + + D +   GV        + +  FC++++     S L ++ K  
Sbjct: 78  LLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKL- 136

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                  V    +I+GFC G R+EEA  +++++     KPD + Y  + +     G V  
Sbjct: 137 -GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY 195

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              +  +    G+ P    Y   + GL    R  +A  L   +   K   D    NALI 
Sbjct: 196 ALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID 255

Query: 340 S-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           + V       A   +N MI     P + T ++L    C     DE  +++ ++     F 
Sbjct: 256 AFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFP 315

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+ +Y  +++  C   ++ +A  +  EM +KGL  +   Y +L++   +      A++++
Sbjct: 316 DVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVF 375

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGL 515
             M + G   N++TYN+L+      G+++ AL +F +M ++   GVAP+  TY  LL GL
Sbjct: 376 SHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGL 435

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           C    L+ A  VF      ++ +     +  +  +C+ G    A  L   L S
Sbjct: 436 CYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPS 488



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 174/366 (47%), Gaps = 8/366 (2%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ++ A+ M ++M   G++   + +   I   C+N  +   LS+ D++   EN  I   V+ 
Sbjct: 158 MEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM---ENYGIRPDVVM 214

Query: 230 VL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +++G C   R  +A  +L  +  R+ KPD I +  + + F   G   + E +  +  
Sbjct: 215 YTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI 274

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
           ++ +AP    Y   I G  +E  + EA+++  ++ +     D     +LI G        
Sbjct: 275 RMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVD 334

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+  F  M +KG      T + L +   +  K +   EV+  + +     ++ +YNV++
Sbjct: 335 DAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLD---PDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
             LC +G++++A  + ++M+++ +D   P++  YN L+   C    L  A  +++ M   
Sbjct: 395 HCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
                + TY I+I    + G+++ A+ LF ++  KGV P+  TYT+++ GL +E     A
Sbjct: 455 EMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEA 514

Query: 525 FEVFNK 530
             +F K
Sbjct: 515 HVLFRK 520



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 8/230 (3%)

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           L   + S+    A+  F  M+E   +P++   + L   + K  K D ++ +   L     
Sbjct: 44  LRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGV 103

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ + N++++  C S +   A   + +M + G +PD+  + SL+   C  + +  A  
Sbjct: 104 SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMS 163

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + +QM   G   ++  Y  +I    + G +  AL LF  M   G+ PD   YTSL+ GLC
Sbjct: 164 MVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLC 223

Query: 517 QETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
                + A  +      + +  DV+   +++  F+    + G FL A +L
Sbjct: 224 NSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFV----KEGKFLDAEEL 269



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 62/149 (41%)

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  EA  +   M      P +  +  L+    +         L D +   G S +L T N
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           +L++ F +  +   A      M++ G  PD  T+TSL+ G C    ++ A  + N+ V  
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLL 563
            +     + +T + SLC+ GH   A  L 
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLF 200


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 227/518 (43%), Gaps = 32/518 (6%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++ S       +  + +++++    +  D   +   I +L +     +A  +F +++
Sbjct: 222 YNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQ 281

Query: 147 FNCEDIG---PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            + E +G   P +   N +L     +G ++ A  + + M   G   S   +  ++     
Sbjct: 282 MDGE-LGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLR 340

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           N KL +  S+LDE+   EN +        +++ G C+   + +A +++D +      PD 
Sbjct: 341 NGKLLEGRSVLDEMV--ENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDT 398

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  +   +   G VFE + +L +  + G  P T      +  L  E R  EA+E+ + 
Sbjct: 399 VTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQK 458

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +    + +D    N ++  +            N  +EK         ++ + +L K N  
Sbjct: 459 MNEKSYQLDTVTCNIVVNGLCR----------NGELEKASEVVSEMWTDGTNSLGKENPV 508

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
             LV     +S N    D+ +Y  +++ LC  G+L EA     EM  K L PD   Y++ 
Sbjct: 509 AGLVNSIHNVSTN--VPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTF 566

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C++  +  A ++   M  +GCS  L+TYN LI      G+I     L   M E+G+
Sbjct: 567 VLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGI 626

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI---SLCRRGHFLV 558
            PD  TY +++  LC+    + A  + ++ ++  V+     +S+F I   + C+ G F V
Sbjct: 627 HPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPN--VSSFKILIKAFCKSGDFKV 684

Query: 559 ATKLLRGLSSDLGHSDSHVILL-------KSLADAREV 589
           A +L     S  GH ++   L+         L+DA+E+
Sbjct: 685 ACELFDVALSVCGHKEALYSLMFNELLAGGKLSDAKEL 722



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/447 (21%), Positives = 194/447 (43%), Gaps = 39/447 (8%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           + PE    N L+  L     +D+A ++FD+MS +G + +    G+ +  FC   +  Q L
Sbjct: 147 VNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQAL 206

Query: 210 SMLDEVRKRENSMINGSVIAVL---IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             +D         + G+V  V+   ++  FCK    +EA K+++ +  +   PD + +  
Sbjct: 207 EFVD-------GKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNS 259

Query: 267 VAEEFKLMGSVFEREVVLKKKR---KLGVA-PRTNDYREFILGLIVERRICEAKELGEVI 322
                   G VFE   + +  +   +LG+  P    +   + G   E  + EA+ L E +
Sbjct: 260 RISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETM 319

Query: 323 VSGKFTIDDDVLNA-LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
             G   +  +  N  L+G + +          + M+E G  P + + + +   LC+ +  
Sbjct: 320 KKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMM 379

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
            +   +  ++ +N  + D  +Y  ++   C+ G++ EA  ++ EM RKG  P+    N+L
Sbjct: 380 LDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTL 439

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + +  +E     A+++  +M       +  T NI+++     GE+E A  +   M   G 
Sbjct: 440 LNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGT 499

Query: 502 ----------------------APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
                                  PD  TYT+L+ GLC+   L+ A + F + +  ++   
Sbjct: 500 NSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPD 559

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGL 566
                TF+++ C++G    A ++L+ +
Sbjct: 560 SVTYDTFVLNFCKQGKISSALRVLKDM 586



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 200/490 (40%), Gaps = 36/490 (7%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           +D  L   K N +T     +  ++    Q    ++A S+   +K     +  E  N+ L 
Sbjct: 282 MDGELGLPKPNVVT-----FNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLL 336

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +G +     + DEM   G+E +   + + +   C N  +     ++D +    N +
Sbjct: 337 GLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMV--SNGV 394

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +V    ++HG+C   +V EA  +L+E+  + C P+      +       G   E E 
Sbjct: 395 YPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEE 454

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSV 341
           +L+K  +      T      + GL     + +A E+  E+   G  ++  +  N + G V
Sbjct: 455 MLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKE--NPVAGLV 512

Query: 342 SSI--------DPRSAIVFFNFMIEKGRV----------------PTLSTLSNLSKNLCK 377
           +SI        D  +     N + + G++                P   T      N CK
Sbjct: 513 NSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCK 572

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
           + K    + V K +  N     +++YN ++  L + G++ E YG++ EM+ +G+ PD+  
Sbjct: 573 QGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICT 632

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSEVGEIEGALRLFHNM 496
           YN+++   C     + A  L  +M   G  S N+ ++ ILI  F + G+ + A  LF   
Sbjct: 633 YNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVA 692

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L      +A  Y+ +   L     L  A E+F  S+   ++    +    +  LC+ G  
Sbjct: 693 LSVCGHKEAL-YSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRL 751

Query: 557 LVATKLLRGL 566
             A  LL+ L
Sbjct: 752 DDAHGLLQKL 761



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           +M + G++P+   +N L+++ C  + L  A++L+D+M   GC  N  T  IL+  F   G
Sbjct: 141 DMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAG 200

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             + AL      +  G   +   Y +L+   C++     A ++  +     ++      +
Sbjct: 201 RTKQALEFVDGKM--GGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFN 258

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD 569
           + + +LCR G    A+++ R +  D
Sbjct: 259 SRISALCRAGKVFEASRIFRDMQMD 283


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 209/450 (46%), Gaps = 19/450 (4%)

Query: 160  LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
            +L V+A     D  + ++ +M + G+      F + I  FC  ++L   L++L ++ K  
Sbjct: 610  VLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLG 669

Query: 218  -RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KL 273
             R + +  GS     +++GFC+G R +EA  ++D +      P+ + Y  V       + 
Sbjct: 670  FRPSIVTLGS-----LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 724

Query: 274  MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            + +  E    ++KK   G+      Y   I GL    R  +A  L   +V  K   +   
Sbjct: 725  LNNALEVFYCMEKK---GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 781

Query: 334  LNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
              ALI + V   +   A   +  MI +  VP + T ++L    C      +   ++ ++ 
Sbjct: 782  FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 841

Query: 393  ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +   F D+ +YN +++  C S R+ +   +  EM  +GL  D   YN+L+   C+   L 
Sbjct: 842  SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 901

Query: 453  PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
             A+K++++M   G S ++ TYNIL+      G+IE AL +  ++ +  +  D  TY  ++
Sbjct: 902  VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 961

Query: 513  EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSDLG 571
            +GLC+   L+ A+ +F +S+    +   +I    MIS LCR+G    A KL R +  D G
Sbjct: 962  QGLCRTDKLKEAWCLF-RSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED-G 1019

Query: 572  HSDSHVILLKSLADAREVEMAIEHIKWIQE 601
               S  I  ++L D     ++ E IK   E
Sbjct: 1020 FMPSERIYDETLRD-HYTSLSAELIKAAHE 1048



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 206/503 (40%), Gaps = 66/503 (13%)

Query: 54  RVINPYLLTHHSLALGFFNWASQ-QPNFTHS-----------------PL----SYHSIL 91
           RV+NP LL   + A  F ++  + +  F HS                 PL     +  +L
Sbjct: 19  RVVNPNLLGGGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLL 78

Query: 92  KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCE 150
            + +  R+   +    +++++  I+ D   +  +I    +      A SV  ++ K   E
Sbjct: 79  TATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYE 138

Query: 151 DIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
              P I    SLL        I +A  +   M   G E + + +   I   C+N +L   
Sbjct: 139 ---PSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIA 195

Query: 209 LSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
           L +L+E+ K+    +   V+    ++ G C   R  +A ++L ++  R   PD + +  +
Sbjct: 196 LELLNEMEKKG---LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
            + F   G++ E + + K+  +  V P    Y   I GL +  R+ +AK+          
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT--------- 303

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                                    F+ M  KG  P + T + L    CK    DE +++
Sbjct: 304 -------------------------FDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           ++ +S   +  D+ +YN ++   C  G+LR A  +   M  + + PD+  +  L+   C 
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV 398

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              +  A   +D M  S     +  YNI+I    +  ++E A  LF  +  +GV PDA T
Sbjct: 399 NGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDART 458

Query: 508 YTSLLEGLCQETNLQAAFEVFNK 530
           YT ++ GLC+    + A E+  +
Sbjct: 459 YTIMILGLCKNGPRREADELIRR 481



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/527 (22%), Positives = 222/527 (42%), Gaps = 41/527 (7%)

Query: 123 RFIIPSLIQGKNTQKAFSVFNE---------VKFNCEDIG------------PEICN--S 159
           R + P+L+ G    +AFS + E         ++F  ED              P I +   
Sbjct: 19  RVVNPNLLGGGAAARAFSDYREKLRTGFLHSIRF--EDAFALFFEMVHSQPLPSIVDFTR 76

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL   A+    +  +    +M   G+      F + I  FC  ++L   LS+L ++ K  
Sbjct: 77  LLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLG 136

Query: 218 RENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E S++  GS     ++HGFC   R+ +AF ++  +     +P+ + Y  + +     G 
Sbjct: 137 YEPSIVTFGS-----LLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +     +L +  K G+      Y   + GL    R  +A  +   ++      D     A
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251

Query: 337 LIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI   V   +   A   +  MI+    P   T +++   LC   +  +  + + ++++  
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F ++ +YN ++S  C    + E   + Q M  +G + D+  YN+L+   C+   LR A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            ++  M +   + ++ T+ IL+      GEIE AL  F +M E         Y  ++ GL
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDL 570
           C+   ++ A+E+F +     V       +  ++ LC+ G    A +L+R     G+   +
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQM 491

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617
              D H  L +  +  +E+ +++  I    +S+P  +Q +    F+S
Sbjct: 492 NAEDDH--LEEHSSSNKEISLSLREIWERSKSNPFWMQRLIPIAFSS 536



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 113/571 (19%), Positives = 234/571 (40%), Gaps = 52/571 (9%)

Query: 30  WTPLLEQTLHQLGLRDS--LSPSLVARVINPYLLTHHSLALGF------------FNWAS 75
           +T L++  + Q  L ++  L   ++   ++P  +T++S+  G             F+  +
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            +  F +  ++Y++++      R ++    + +++       D   Y  +I    Q    
Sbjct: 309 SKGCFPNV-VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKL 367

Query: 136 QKAFSVFNEVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           + A  +F  +      + P+I     LL  L  +G I++AL  FD+M         + + 
Sbjct: 368 RVALDIFCWMV--SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYN 425

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           + I   C+  K+ +   +   +   E    +     ++I+ G CK     EA    DEL 
Sbjct: 426 IMIHGLCKADKVEKAWELFCRL-PVEGVKPDARTYTIMIL-GLCKNGPRREA----DEL- 478

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY----------REFI 303
           IR  K + I  ++ AE+  L       + +    R++    ++N +             +
Sbjct: 479 IRRMKEEGIICQMNAEDDHLEEHSSSNKEISLSLREIWERSKSNPFWMQRLIPIAFSSSV 538

Query: 304 LGLIVERR---ICEAKELGEVIVSGKFT---IDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            G +  RR   + E     E  +S  F+           L   +  I    A   F  M+
Sbjct: 539 KGFV--RRHYLLLERGNNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEML 596

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           +   +P++   + +   + K NK D ++ +Y  +       D+ S+ +++   C   RL 
Sbjct: 597 QSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLS 656

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
            A  ++ +M + G  P +    SL+   C+ +  + A  L D M   G   N+  YN +I
Sbjct: 657 LALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVI 716

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVN 533
           +   +  ++  AL +F+ M +KG+  DA TY +L+ GL        A     ++  + ++
Sbjct: 717 NGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKID 776

Query: 534 HDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            +V+   +++ TF+    + G+ L A  L +
Sbjct: 777 PNVIFFTALIDTFV----KEGNLLEARNLYK 803



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 118  DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
            D   Y  +I    + K  +    +F E+ +          N+L+      G ++ A K+F
Sbjct: 848  DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 907

Query: 178  DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            + M   GV    + + + +   C N K+ + L M+++++K E  M    +   +II G C
Sbjct: 908  NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE--MDVDIITYNIIIQGLC 965

Query: 238  KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
            +  +++EA+ +   L  +  KPD IAY  +       G   E + + ++ ++ G  P   
Sbjct: 966  RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSER 1025

Query: 298  DYRE 301
             Y E
Sbjct: 1026 IYDE 1029



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 112/586 (19%), Positives = 230/586 (39%), Gaps = 45/586 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L  L  S + +    +L+ +    I  D   +  +I   ++  N  +A  ++ E
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  +  D      NS++  L   G + +A K FD M+ +G   + + +   I  FC+   
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCK--- 328

Query: 205 LGQVLSMLDEVRKRENSM----INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKP 259
                 M+DE  K    M     N  +     +IHG+C+  ++  A  +   +  R   P
Sbjct: 329 ----FRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRK----LGVAPRTNDYREFILGLIVERRICEA 315
           D I + I+     + G +    V     R+    +G+      Y   I GL    ++ +A
Sbjct: 385 DIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA----YNIMIHGLCKADKVEKA 440

Query: 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
            EL   +       D      +I  +    P R A      M E+G +  ++   +  + 
Sbjct: 441 WELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEE 500

Query: 375 LCKRNK--SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
               NK  S  L E+++   +N ++  M+    +       G +R  Y +++    +G +
Sbjct: 501 HSSSNKEISLSLREIWERSKSNPFW--MQRLIPIAFSSSVKGFVRRHYLLLE----RGNN 554

Query: 433 PDVSFYNSLMEAC----CREDL--------LRPAKKLWDQMFASGCSGNLKTYNILISKF 480
           P+ S   S   A      RE L           A  L+ +M  S    ++  +  +++  
Sbjct: 555 PETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVI 614

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           +++ + +  + L+H M   G++ D  ++T L+   C+ + L  A  +  K +      + 
Sbjct: 615 AKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSI 674

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LLKSLADAREVEMAIEHIK 597
             L + +   C+   F  A  L+  +    G   + VI   ++  L   R++  A+E   
Sbjct: 675 VTLGSLLNGFCQGNRFQEAVSLVDSMDG-FGFVPNVVIYNTVINGLCKNRDLNNALEVFY 733

Query: 598 WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
            +++            L + LS+S        LL  + ++ +D  +
Sbjct: 734 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNV 779



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 90/199 (45%), Gaps = 6/199 (3%)

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           +  ++       ++Y++++  LS S +      +L+ +   KI  +   +  +I + ++ 
Sbjct: 733 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 792

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
            N  +A +++ E+      + P +   NSL+      G + +A  MFD M  +G     +
Sbjct: 793 GNLLEARNLYKEMIR--RSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVV 850

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            +   I  FC++ ++   + +  E+  +   ++  +     +IHG+C+  ++  A KV +
Sbjct: 851 TYNTLITGFCKSKRVEDGMKLFCEMTYQ--GLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 908

Query: 251 ELRIRECKPDFIAYRIVAE 269
            +      PD + Y I+ +
Sbjct: 909 RMVDCGVSPDIVTYNILLD 927


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 36/341 (10%)

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            K+LDE+R + C PD I Y +V       G V +    L+     G  P T  Y   + G
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365
           L    R  +A++L E                                   M  KG  P +
Sbjct: 61  LFTAERWEDAEKLMEE----------------------------------MAHKGCPPNV 86

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            T + L   LC+R   +  +EV + +       +  SYN ++   C   ++ +A   ++ 
Sbjct: 87  VTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVEL 146

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G  PD+  YN+L+ A CR   +  A  L  Q+   GCS  L +YN +I   ++ G+
Sbjct: 147 MVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGK 206

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            + AL L   M+ KG+ PD  TYT++  GLC+E  ++ A   F K  +  +     + + 
Sbjct: 207 TKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNA 266

Query: 546 FMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
            ++ LC+R     A  L   + S+  + +  ++ IL++ LA
Sbjct: 267 ILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLA 307



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 156/364 (42%), Gaps = 36/364 (9%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           +K+ DEM  +G     I + V +   C+  ++   +  L+ +          +V   +++
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGE--PNTVSYNIVL 58

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            G    +R E+A K+++E+  + C P+ + + ++       G V     VL++  K G  
Sbjct: 59  KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCT 118

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353
           P +  Y   +         C+ K++ +                            A+ F 
Sbjct: 119 PNSLSYNPLL------HAFCKQKKMDK----------------------------AMAFV 144

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
             M+ +G  P + + + L   LC+  + D  +++   L        + SYN ++  L  +
Sbjct: 145 ELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKA 204

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           G+ +EA  ++ EM  KGL PD+  Y ++    CRED +  A + + ++   G    +  Y
Sbjct: 205 GKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLY 264

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           N ++    +  E   A+ LF  M+  G  P+ +TYT L+EGL  E  ++ A ++  +  +
Sbjct: 265 NAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCS 324

Query: 534 HDVM 537
             V+
Sbjct: 325 RGVV 328



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 120/262 (45%), Gaps = 3/262 (1%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A K+ +EM+H+G   + + F + I   C    +   + +L+++ K        S+   
Sbjct: 68  EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKY--GCTPNSLSYN 125

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++H FCK K++++A   ++ +  R C PD ++Y  +       G V     +L + +  
Sbjct: 126 PLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGK 185

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSA 349
           G +P    Y   I GL    +  EA EL + ++S     D      +   +   D    A
Sbjct: 186 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEA 245

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           I  F  + + G  PT+   + +   LCKR ++   ++++  + +N    +  +Y ++V  
Sbjct: 246 IRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEG 305

Query: 410 LCTSGRLREAYGVIQEMKRKGL 431
           L   G ++EA  ++ ++  +G+
Sbjct: 306 LAYEGLVKEARDLLGQLCSRGV 327


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 218/527 (41%), Gaps = 42/527 (7%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI----------------------- 338
            + G   +  + E   L +++V      +  V + LI                       
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 339 --------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   G+V  I  +S     A+ +F  MI++   P     ++L  +LC  +K D+  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+   +       D   +N ++   C  GR+ E+  +   M R G+ PD+  Y++L++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A KL   M + G   +  TYN LI+ + ++  +E AL LF  M   GV+PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            TY  +L+GL Q     AA E++         L  S  +  +  LC+
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 183/425 (43%), Gaps = 49/425 (11%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A  +FDE+  RG   S  G    +     ++    V       R   + +        
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER------EVVL 284
           +++   C   R++  F  L  +  +    D IA+  +     L G   ++      ++VL
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPM-----LKGLCADKRTSDAMDIVL 150

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN---ALIGSV 341
           ++  +LG  P    Y   + GL  + R  EA EL +++         DV++    + G  
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D   A   ++ M+++G +P + T S++   LCK    D+ +EV   +  N    +  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V   C+SG+ +EA G +++M   G++PDV  YNSLM+  C+      A+K++D M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 462 FASGCSGNLKTY-----------------------------------NILISKFSEVGEI 486
              G    + TY                                   +ILI  +++ G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ +F  M ++G+ PD  TY +++  LC+   ++ A   F + ++  +     + ++ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL 450

Query: 547 MISLC 551
           + SLC
Sbjct: 451 IHSLC 455



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 13/455 (2%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVF-----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
            Y  II +L + +   KA  V      N V  NC        NS++    S G    A+ 
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY-----NSIVHGYCSSGQPKEAIG 290

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
              +M   GVE   + +   +   C+N +  +   M D + KR   +         ++ G
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR--GLKPEITTYGTLLQG 348

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +     + E   +LD +      P+   + I+   +   G V +  +V  K R+ G+ P 
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
           T  Y   I  L    R+ +A    E ++  + +  + V N+LI S+   D    A     
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G        +++  + CK  +  E  +++ ++       D+ +Y+ ++   C +G
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA  ++  M   G+ PD   YN+L+   C+   +  A  L+ +M +SG S ++ TYN
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I++    +      A  L+  + E G   + +TY  +L GLC+      A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           D+ L     +  + +L + G    A  L   LS++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 197/475 (41%), Gaps = 48/475 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+ +L  ++ ++    VL  +  N +  +   Y  I+         ++A      
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK- 293

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K + + + P++   NSL+  L  +G    A KMFD M+ RG++     +G  +  +   
Sbjct: 294 -KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++  +LD +  R     N  V ++LI   + K  +V++A  V  ++R +   PD +
Sbjct: 353 GALVEMHGLLD-LMVRNGIHPNHYVFSILIC-AYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  V       G V +     ++     ++P    Y   I  L +  +  +AKEL   +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 323 VSGKFTIDDDVLNALIGSVSS----IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +     +D    N++I S       I+       F+ M+  G  P + T S L    C  
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEK---LFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K DE  ++   + +     D  +YN +++  C   R+ +A  + +EM+  G+ PD+  Y
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASG---------------CSGNL------------- 470
           N +++   +      AK+L+  +  SG               C  NL             
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 471 -------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                  +T+NI+I    +VG  + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      ++  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FIVDAIAFTPMLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y+S++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 189/435 (43%), Gaps = 15/435 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  +I +  +     +A  VF+++
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   + + P+     +++ +L   G +++A++ F++M    +    I +   I   C   
Sbjct: 401 RQ--QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 204 KLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           K  +    +L MLD     +    N       II   CK  RV E+ K+ D +     KP
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNS------IIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L 
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + S   + D    N ++ G   +    +A   +  + E G    LST + +   LCK 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N +DE + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           + + E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 499 KGVAPDATTYTSLLE 513
           K  + +A+T +  L+
Sbjct: 753 KHFSLEASTASLFLD 767


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 136/581 (23%), Positives = 241/581 (41%), Gaps = 12/581 (2%)

Query: 8   DLATRISQAIISASNRTRPAR-KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           DLA  +   ++  + R    R  W+  LE  L  L LR +++PS V  V+          
Sbjct: 51  DLAEELRSRLVRDTCRLLELRDSWSAKLEAQLRHL-LR-AMTPSQVRAVLRAQAQRDARA 108

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A  FF WA +Q  + H+P  +  +L  LS +R  +    V++ +    +   +  +  ++
Sbjct: 109 AFEFFRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLM 168

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
            S  +    + A  V   ++   +   P+IC  N  + VL   G ID AL+  + M   G
Sbjct: 169 LSYSRAGKLRSAMRVLQLMQK--DGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVG 226

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V+   + +   I   C   ++   L M+  +   +N  +   +    ++   CK KRV +
Sbjct: 227 VDPDVVTYNCLIKGLCGARRIVDALEMISSML--QNGCLPDKISYFTVMSFLCKEKRVAD 284

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
              +L+ +      PD + Y ++       G   E    L++            Y   + 
Sbjct: 285 VQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVH 344

Query: 305 GLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRV 362
              +  R+ EAKE+ GE+I  G    D    +A++     I +   A      M + G  
Sbjct: 345 SFCLNGRMAEAKEIIGEMISKG-CRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCK 403

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P   T + L   LCK  KS E  E+        +     +Y+V++      G+L+E+  V
Sbjct: 404 PNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDV 463

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + +M +KG  P     N L+ A C E     AK   +Q  + GC  N+  +  +I  FS 
Sbjct: 464 VMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSR 523

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G++E AL L  +M      PD  TYT +++ L ++  ++ A  +  K +N  +      
Sbjct: 524 QGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVT 583

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
             T +   C +G       LL  + +  G S ++  +++ L
Sbjct: 584 YRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSSAYNQVIEKL 624



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/447 (21%), Positives = 189/447 (42%), Gaps = 23/447 (5%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY +++  L   +++  + ++L+++    I  D   Y  +I  L +  +  +A S   E
Sbjct: 267 ISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRE 326

Query: 145 V---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
               +F  +++G    ++ +     +G +  A ++  EM  +G     + +   +  FC 
Sbjct: 327 SEGKRFRVDEVGY---SATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCR 383

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             +L Q   M+  + K  N     +V    +++G CK  +  EA+++L++       P  
Sbjct: 384 IGELDQARKMMKHMYK--NGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSA 441

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y +V   F+  G + E   V+ +  + G  P T +    I  L  ER+  +AK+  E 
Sbjct: 442 ITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQ 501

Query: 322 IVS-GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
             S G F    +    + G     D  SA+   + M    R P + T + +   L ++ K
Sbjct: 502 CQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGK 561

Query: 381 SDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFY 438
             E    V K+L+   + T + +Y  ++   C  G + +   ++ +M  ++G     S Y
Sbjct: 562 MKEATSLVEKMLNRGLHPTPV-TYRTVIHRYCEKGAVEDLLNLLDKMLAKEGFS---SAY 617

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           N ++E  C    L  A  L  ++  +    + +T +IL+  F   G    +  +   M +
Sbjct: 618 NQVIEKLCAFGKLSEANNLLSKVLRTASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQ 677

Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAF 525
           + + PD          LCQ+ + Q A 
Sbjct: 678 RNLIPDLK--------LCQKVDSQLAL 696


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 184/425 (43%), Gaps = 49/425 (11%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A  +FDE+  RG   S  G    +     ++    V       R   + +        
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER------EVVL 284
           ++I   C   R++  F  L  +  +  + D IA+  +     L G   ++      ++VL
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPL-----LKGLCADKRTSDAMDIVL 150

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN---ALIGSV 341
           ++  +LG  P    Y   + GL  E R  EA EL +++         DV++    + G  
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D   A   ++ M+++G +P + T S++   LCK    D+ +EV   +  N    +  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V   C+SG+ +EA G +++M   G++PDV  YNSLM+  C+      A+K++D M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 462 FASGCSGNLKTY-----------------------------------NILISKFSEVGEI 486
              G    + TY                                   +ILI  +++ G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ +F  M ++G+ PD  TY +++  LC+   ++ A   F + ++  +     + ++ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL 450

Query: 547 MISLC 551
           + SLC
Sbjct: 451 IHSLC 455



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 167/389 (42%), Gaps = 15/389 (3%)

Query: 138 AFSVFNEV-KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           A S +N + +   +++ P +C    L+      G +D        +  +G     I F  
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLD 250
            +   C + +    +   D V +R   +  G +  V    +++ G C   R +EA ++L 
Sbjct: 132 LLKGLCADKRTSDAM---DIVLRRMTQL--GCIPNVFSYNILLKGLCDENRSQEALELLQ 186

Query: 251 ELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            +     +C PD ++Y  V   F   G + +      +    G+ P    Y   I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
            + + +A E+   +V      +    N+++ G  SS  P+ AI F   M   G  P + T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            ++L   LCK  +  E  +++  ++      ++ +Y  ++    T G L E +G++  M 
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           R G+ P+   ++ L+ A  ++  +  A  ++ +M   G + +  TY  +I    + G +E
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            A+R F  M+++ ++P    Y SL+  LC
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLC 455



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y+S++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/405 (19%), Positives = 155/405 (38%), Gaps = 44/405 (10%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            + G   +  + E   L                                   + M+  G 
Sbjct: 345 LLQGYATKGALVEMHGL----------------------------------LDLMVRNGI 370

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P     S L     K+ K D+ + V+  +       D  +Y  ++  LC SGR+ +A  
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK----KLWDQMF 462
             ++M  + L P    YNSL+ + C  D    AK    K W + F
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLKCWIEAF 475


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 158/378 (41%), Gaps = 9/378 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN ++  +        A     +M   G E   + F   +  FC   ++   L++ D++ 
Sbjct: 120 CNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIV 179

Query: 217 K---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
               R N      V    +IH  CK + +  A ++ +++     +P+ + Y  +      
Sbjct: 180 GMGFRPN-----VVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCE 234

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           +G   +   +L+   K G+ P    +   I   +   +I EAKEL +V++      D   
Sbjct: 235 IGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFT 294

Query: 334 LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             ALI  + +      A   F  M   G  P   T + L    CK  + ++  +++  +S
Sbjct: 295 YTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMS 354

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 +  +Y V++   C  GR   A  V  +M  +   PD+  YN L++  C    + 
Sbjct: 355 QKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVE 414

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  ++  M       N+ TY I+I    +VG++E A  LF ++  KG+ P+  TYT+++
Sbjct: 415 KALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMI 474

Query: 513 EGLCQETNLQAAFEVFNK 530
            G C+   +  A  +F K
Sbjct: 475 SGFCRRGFIHEADALFKK 492



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 159/347 (45%), Gaps = 3/347 (0%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SLL        I++AL +FD++   G   + + +   I   C+N  L   + + +++   
Sbjct: 157 SLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMG-- 214

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
           +N +    V    ++ G C+  R  +A  +L ++  R  +P+ I +  + + F  +G + 
Sbjct: 215 DNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIM 274

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E + + K   ++ V P    Y   I GL    R+ EA+++  ++ S  +  ++     LI
Sbjct: 275 EAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Query: 339 -GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G   S         F  M +KG V    T + L +  C   + D   EV+  + +    
Sbjct: 335 HGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAP 394

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ +YNV++  LC +G + +A  + + M+++ +D ++  Y  +++  C+   +  A  L
Sbjct: 395 PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDL 454

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           +  +F+ G   N+ TY  +IS F   G I  A  LF  M E G  P+
Sbjct: 455 FCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 40/371 (10%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           LL+V+A     D  + +F++M   G+        + +   C +++  +    L ++ K  
Sbjct: 88  LLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLG 147

Query: 219 -ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  + +    +HGFC   R+E+A  + D++     +P+ + Y  +         +
Sbjct: 148 FEPDLVTFTSL----LHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHL 203

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +  +    G+ P    Y   + GL      CE                       
Sbjct: 204 NHAVEIFNQMGDNGIRPNVVTYNSLVSGL------CE----------------------- 234

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           IG  S      A      M+++G  P + T + L     K  K  E  E+YKV+     +
Sbjct: 235 IGRWSD-----AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVY 289

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ +Y  +++ LCT GRL EA  +   M+  G  P+   Y +L+   C+   +    K+
Sbjct: 290 PDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKI 349

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M   G   N  TY +LI  +  VG  + A  +F+ M  +   PD  TY  LL+GLC 
Sbjct: 350 FYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCY 409

Query: 518 ETNLQAAFEVF 528
              ++ A  +F
Sbjct: 410 NGYVEKALMIF 420



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 130/256 (50%), Gaps = 4/256 (1%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ ++  G  P + T + L   LCK    +  VE++  +  N    ++ +YN +VS
Sbjct: 171 ALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVS 230

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  GR  +A  ++++M ++G+ P+V  + +L++A  +   +  AK+L+  M       
Sbjct: 231 GLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYP 290

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ TY  LI+     G ++ A ++F+ M   G  P+  TYT+L+ G C+   ++   ++F
Sbjct: 291 DVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIF 350

Query: 529 NKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLAD 585
            + ++   ++A +I  T +I   C  G   VA ++   + S     D  ++ +LL  L  
Sbjct: 351 YE-MSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCY 409

Query: 586 AREVEMAIEHIKWIQE 601
              VE A+   K++++
Sbjct: 410 NGYVEKALMIFKYMRK 425



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 4/304 (1%)

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S  P  A  F   M++ G  P L T ++L    C  N+ ++ + ++  +    +  ++ +
Sbjct: 130 SSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVT 189

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++  LC +  L  A  +  +M   G+ P+V  YNSL+   C       A  L   M 
Sbjct: 190 YTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMM 249

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N+ T+  LI  F +VG+I  A  L+  M++  V PD  TYT+L+ GLC    L 
Sbjct: 250 KRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLD 309

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILL 580
            A ++F    ++         +T +   C+       TK+   +S    + ++ ++ +L+
Sbjct: 310 EARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLI 369

Query: 581 KSLADAREVEMAIEHIKWI-QESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
           +        ++A E    +    +P  ++  +  L   L  + Y E  L++   ++++ +
Sbjct: 370 QGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNV-LLDGLCYNGYVEKALMIFKYMRKREM 428

Query: 640 DSEI 643
           D  I
Sbjct: 429 DINI 432



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 164/387 (42%), Gaps = 41/387 (10%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITL 117
           P L+T  SL  GF +W              + I  +L+L  QI  +       + N +T 
Sbjct: 150 PDLVTFTSLLHGFCHW--------------NRIEDALALFDQIVGMG-----FRPNVVT- 189

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
               Y  +I  L + ++   A  +FN++  N   I P +   NSL++ L   G   +A  
Sbjct: 190 ----YTTLIHCLCKNRHLNHAVEIFNQMGDN--GIRPNVVTYNSLVSGLCEIGRWSDAAW 243

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-----V 230
           +  +M  RG++ + I F   I  F    K+G+++    E ++    MI  SV        
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAF---VKVGKIM----EAKELYKVMIQMSVYPDVFTYT 296

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G C   R++EA ++   +      P+ + Y  +   F     V +   +  +  + 
Sbjct: 297 ALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQK 356

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+   T  Y   I G  +  R   A+E+   + S +   D    N L+ G   +     A
Sbjct: 357 GLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKA 416

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           ++ F +M ++     + T + + + +CK  K ++  +++  L +     ++ +Y  M+S 
Sbjct: 417 LMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISG 476

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVS 436
            C  G + EA  + ++MK  G  P+ S
Sbjct: 477 FCRRGFIHEADALFKKMKEDGFLPNES 503



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 2/181 (1%)

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++S +    R      + ++M+  G+ P +   N +M   CR      A     +M   G
Sbjct: 88  LLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLG 147

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              +L T+  L+  F     IE AL LF  ++  G  P+  TYT+L+  LC+  +L  A 
Sbjct: 148 FEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAV 207

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD 585
           E+FN+  ++ +       ++ +  LC  G +  A  LLR +         +VI   +L D
Sbjct: 208 EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKR--GIQPNVITFTALID 265

Query: 586 A 586
           A
Sbjct: 266 A 266


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 199/461 (43%), Gaps = 17/461 (3%)

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +AI ++ ++    ++ L    Y F + SL +   T+    V++++    + + P+    N
Sbjct: 16  DAIQAI-RRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQ--DGLLPDTVTYN 72

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-----LD 213
           +++     +G +  A + F  +   G+E  T      +  +C   +L +   +     L 
Sbjct: 73  TMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLM 132

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
             ++ E S         ++I G C  K V +A  +   ++   C P+  A+  +      
Sbjct: 133 GCQRNEYSY-------TILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK 185

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G V +  ++     + GV P    Y   I+G     R+ +A ++ E++       DD  
Sbjct: 186 SGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWT 245

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
            N LI  +       A    N  +++G  PT+ T +NL    C   K D+ + +   + +
Sbjct: 246 YNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMS 305

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D++ +  +++ L    RL+EA  ++ E+   GL P+V  Y S+++  C+   +  
Sbjct: 306 SKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 365

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A ++   M   GC  N  TYN L+    +  ++  A+ L   M + G+ P+  TYT+LL+
Sbjct: 366 ALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQ 425

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           G C E +   AF +F     + +       +    +LC+ G
Sbjct: 426 GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG 466



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 192/461 (41%), Gaps = 9/461 (1%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  Q     S ++Y++++   S   ++N    + + ++ N    D   Y  +I  L   K
Sbjct: 198 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 257

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             +    + N VK   E   P +    +L+         D+AL+M ++M     +     
Sbjct: 258 TEEAEELLNNAVK---EGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 314

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG  I    +  +L +   +L+E+    N ++   +    II G+CK  +V+ A +VL  
Sbjct: 315 FGKLINSLIKKDRLKEAKELLNEISA--NGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 372

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +    C+P+   Y  +         + +   +L K +K G+ P    Y   + G   E  
Sbjct: 373 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 432

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
              A  L E++       D+     L  ++       A   ++F++ KG   T    + L
Sbjct: 433 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK--AGRAEEAYSFIVRKGVALTKVYYTTL 490

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                K   +D    + + +       D  +Y+V++  LC   RL EA  ++ +M  +G+
Sbjct: 491 IDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGI 550

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
              +  Y  L++   RE     AK+++++M +SG   +  TY + I+ + + G +E A  
Sbjct: 551 KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 610

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           L   M  +GVAPD  TY  L++G      +  AF    + V
Sbjct: 611 LILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 651



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/548 (19%), Positives = 218/548 (39%), Gaps = 67/548 (12%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +  FT + +++ +++    ++ + +    +  ++  +K  LD  V+  +I SLI+    +
Sbjct: 270 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLK 329

Query: 137 KAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           +A  + NE+  N   + P +    S++      G +D AL++   M   G + +   +  
Sbjct: 330 EAKELLNEISAN--GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNS 387

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254
            ++   ++ KL + +++L +++K  + +I   +    ++ G C     + AF++ + +  
Sbjct: 388 LMYGLVKDKKLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 445

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
              KPD  AY ++ +     G   E    + +K   GVA     Y   I G         
Sbjct: 446 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYTTLIDGF-------- 494

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
                                       + +   A      MI++G  P   T S L   
Sbjct: 495 --------------------------SKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHA 528

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LCK+ + +E + +   +S       + +Y +++  +   G+   A  +  EM   G  P 
Sbjct: 529 LCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPS 588

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
            + Y   + + C+E  L  A+ L  +M   G + ++ TYNILI     +G I+ A     
Sbjct: 589 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 648

Query: 495 NMLEKGVAPDATTYTSLLE----------------GLCQETNLQAAFEVFNKSVNHDVML 538
            M+     P+  TY  LL+                G+     L   +++  + V H +  
Sbjct: 649 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 708

Query: 539 ARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
             +  S+ +   C+ G    A  LL     +GLS +    D + +L+K   D +  E A+
Sbjct: 709 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPN---EDIYTLLIKCCCDTKFFEKAL 765

Query: 594 EHIKWIQE 601
             +  + E
Sbjct: 766 SFVSIMSE 773



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/498 (21%), Positives = 202/498 (40%), Gaps = 59/498 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+     S +++    VLK ++ +    ++  Y  ++  L++ K   KA ++   
Sbjct: 348 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL-- 405

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K   + I P +    +LL     +   DNA ++F+ M   G++     + V     C+ 
Sbjct: 406 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 465

Query: 203 AKLGQVLS----------------MLDEVRKRENSMINGSVIAVLI-------------- 232
            +  +  S                ++D   K  N+    ++I  +I              
Sbjct: 466 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 525

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           +H  CK KR+ EA  +LD++ +R  K    AY I+ +E    G     + +  +    G 
Sbjct: 526 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 585

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALI---GSVSSIDPR 347
            P    Y  FI     E R+ +A++L  ++   +  +  DV+  N LI   G +  ID  
Sbjct: 586 KPSATTYTVFINSYCKEGRLEDAEDL--ILKMEREGVAPDVVTYNILIDGCGHMGYID-- 641

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN----KSDELVEVYKVLSANDYFTDME-- 401
            A      M+     P   T   L K+L K N    +S +   ++ ++  +  +  +E  
Sbjct: 642 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 701

Query: 402 ----------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                     +Y+ +++  C +GRL EA  ++  M  KGL P+   Y  L++ CC     
Sbjct: 702 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 761

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A      M   G    L++Y +L+      G+ E    LF ++LE G   D   +  L
Sbjct: 762 EKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKIL 821

Query: 512 LEGLCQETNLQAAFEVFN 529
            +GL +   +   F++ +
Sbjct: 822 NDGLLKAGYVDICFQMLS 839



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 2/220 (0%)

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           ++L + + ++ +  VY  L  +    D  +YN M+   C  G L  A+   + +   GL+
Sbjct: 41  RSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE 100

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+    N+L+   CR   LR A  L+  M   GC  N  +Y ILI    +   +  AL L
Sbjct: 101 PETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVL 160

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           F  M   G +P+   +T L+ GLC+   +  A  +F+    + V+ +    +  ++   +
Sbjct: 161 FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSK 220

Query: 553 RGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVE 590
            G    A K+   +  +  H D  ++  L+  L D +  E
Sbjct: 221 LGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEE 260


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 230/556 (41%), Gaps = 70/556 (12%)

Query: 42  GLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSR--- 98
           G+   + P  ++R++     + HS  L FFNW     N T +  +Y  I+  L+ SR   
Sbjct: 79  GILPHMGPHEISRIL-LRCQSDHSSVLTFFNWVKNDLNITPTLHNYCVIVHILAWSRVFS 137

Query: 99  -QINAIDSVLKQVKVNKITL-------------------DSSVYRFIIPSLIQGKNTQKA 138
             +N +  +++ V+V  + +                   + +++  +I + ++    +K 
Sbjct: 138 HAMNLLSELIQLVEVEGVCVPPNDGIYENLVECTEDCNWNPAIFDMLIKAYVKAGMVEKG 197

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
            + F      C       CN LL+ L+   YI     +++EM   G+  +   F +    
Sbjct: 198 LATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHV 257

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
            C++    +V   LD++   E       V    +++ +CK +R+E+AF +   + IR   
Sbjct: 258 LCKDGDTDKVTRFLDKME--EEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVM 315

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR------- 311
           P+ I + ++       G V E   +  +    G+ P    Y   + G   E +       
Sbjct: 316 PNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSL 375

Query: 312 --------ICEAKELGEVIVSG--------------------KFTIDDDVLNALIGSVS- 342
                   IC       +IV G                    +  I +D+ + LI ++  
Sbjct: 376 LHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCI 435

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
              P +A  F   + + G +P ++T + L ++LCK N  +E + +   +       ++ +
Sbjct: 436 EGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVA 495

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++S LC   R  EA G+++EM   G+ PDV    +L+   C E+ +  A  L  + F
Sbjct: 496 YRAVISCLCRVNRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLL-KFF 554

Query: 463 ASGCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
           A+     + ++YN ++  F +VG +   L L   +L+ G   +  T   ++ G      L
Sbjct: 555 ANEFQVYDTESYNAVVKVFCDVGNVAELLELQDKLLKVGYVSNRLTCKYVIHG------L 608

Query: 522 QAAFEVFNKSVNHDVM 537
           Q A E  ++ + HD++
Sbjct: 609 QKAMEQDDEMLGHDML 624



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T + ++  LCK   +D++      +    +  D+ +YN +V+  C   RL +A+ + + M
Sbjct: 250 TFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIM 309

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
             +G+ P++  +  LM   C E  ++ A +L+ QM   G   ++ +YN L+S +   G++
Sbjct: 310 YIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKM 369

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           +    L H M+  G+ PD+ T   ++EG  ++  L +A     +     + +   +    
Sbjct: 370 QMCRSLLHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYL 429

Query: 547 MISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAI 593
           +++LC  G    A   L  +S D  +   +++  L++SL     VE A+
Sbjct: 430 IVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEAL 478



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 127/284 (44%), Gaps = 37/284 (13%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F + M E+G  P L T + L  + CK+ + ++   +YK++       ++ ++ V+++ LC
Sbjct: 270 FLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLC 329

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G+++EA+ +  +M  +G+DPDV  YN+L+   CRE  ++  + L  +M  +G   +  
Sbjct: 330 EEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSV 389

Query: 472 TYNILISKFSEVGEIEGALR---------------LFHNML------------------- 497
           T  +++  F+  G++  AL                L+  ++                   
Sbjct: 390 TCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRI 449

Query: 498 -EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            + G  P   TY  L+E LC+  N++ A  + ++ V   ++L        +  LCR    
Sbjct: 450 SQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRT 509

Query: 557 LVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKW 598
           L A  LL  + S     D  +   L+    +  +V+ A+  +K+
Sbjct: 510 LEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKF 553



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V   N L+    R + +     ++++M   G   N  T+NI+     + G+ +   R 
Sbjct: 211 PNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRF 270

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M E+G  PD  TY +L+   C++  L+ AF ++       VM      +  M  LC 
Sbjct: 271 LDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCE 330

Query: 553 RG-----HFLVATKLLRGLSSDL 570
            G     H L    + RG+  D+
Sbjct: 331 EGKVKEAHQLFHQMVHRGIDPDV 353


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 213/452 (47%), Gaps = 23/452 (5%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           +L V+A     D  + ++ +M + G+      F + I  FC  ++L   L++L ++ K  
Sbjct: 85  VLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLG 144

Query: 218 -RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---KL 273
            R + +  GS     +++GFC+G R +EA  ++D +      P+ + Y  V       + 
Sbjct: 145 FRPSIVTLGS-----LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
           + +  E    ++KK   G+      Y   I GL    R  +A  L   +V  K  ID +V
Sbjct: 200 LNNALEVFYCMEKK---GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK--IDPNV 254

Query: 334 L--NALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           +   ALI + V   +   A   +  MI +  VP + T ++L    C      +   ++ +
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + +   F D+ +YN +++  C S R+ +   +  EM  +GL  D   YN+L+   C+   
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 374

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           L  A+K++++M   G S ++ TYNIL+      G+IE AL +  ++ +  +  D  TY  
Sbjct: 375 LNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 434

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSSD 569
           +++GLC+   L+ A+ +F +S+    +   +I    MIS LCR+G    A KL R +  D
Sbjct: 435 IIQGLCRTDKLKEAWCLF-RSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
            G   S  I  ++L D     ++ E IK   E
Sbjct: 494 -GFMPSERIYDETLRD-HYTSLSAELIKAAHE 523



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 5/343 (1%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++    QG   Q+A S+ + +          I N+++  L  +  ++NAL++F  M  +G
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-AVLIIHGFCKGKRVE 243
           +    + +   I     + +      +L ++ KR+   I+ +VI    +I  F K   + 
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK---IDPNVIFFTALIDTFVKEGNLL 271

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA  +  E+  R   P+   Y  +   F + G + + + +       G  P    Y   I
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLI 331

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            G    +R+ +  +L   +       D    N LI G   +     A   FN M++ G  
Sbjct: 332 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 391

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L   LC   K ++ + + + L  ++   D+ +YN+++  LC + +L+EA+ +
Sbjct: 392 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCL 451

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            + + RKG+ PD   Y +++   CR+ L R A KL  +M   G
Sbjct: 452 FRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 103/220 (46%), Gaps = 8/220 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   F  M++   +P++   + +   + K NK D ++ +Y  +       D+ S+ +++ 
Sbjct: 63  AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   RL  A  ++ +M + G  P +    SL+   C+ +  + A  L D M   G   
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF--- 525
           N+  YN +I+   +  ++  AL +F+ M +KG+  DA TY +L+ GL        A    
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 242

Query: 526 -EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
            ++  + ++ +V+   +++ TF+    + G+ L A  L +
Sbjct: 243 RDMVKRKIDPNVIFFTALIDTFV----KEGNLLEARNLYK 278



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D   Y  +I    + K  +    +F E+ +          N+L+      G ++ A K+F
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
           + M   GV    + + + +   C N K+ + L M+++++K E  M    +   +II G C
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE--MDVDIITYNIIIQGLC 440

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           +  +++EA+ +   L  +  KPD IAY  +       G   E + + ++ ++ G  P   
Sbjct: 441 RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSER 500

Query: 298 DYRE 301
            Y E
Sbjct: 501 IYDE 504



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 90/199 (45%), Gaps = 6/199 (3%)

Query: 73  WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132
           +  ++       ++Y++++  LS S +      +L+ +   KI  +   +  +I + ++ 
Sbjct: 208 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267

Query: 133 KNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI 190
            N  +A +++ E+      + P +   NSL+      G + +A  MFD M  +G     +
Sbjct: 268 GNLLEARNLYKEMIR--RSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVV 325

Query: 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            +   I  FC++ ++   + +  E+  +   ++  +     +IHG+C+  ++  A KV +
Sbjct: 326 TYNTLITGFCKSKRVEDGMKLFCEMTYQ--GLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 383

Query: 251 ELRIRECKPDFIAYRIVAE 269
            +      PD + Y I+ +
Sbjct: 384 RMVDCGVSPDIVTYNILLD 402


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/485 (22%), Positives = 210/485 (43%), Gaps = 25/485 (5%)

Query: 82  HSPLSYHSILKSL----SLSRQINAIDSVLKQ-VKVNKITLDSSVYRFIIPSLIQG--KN 134
           H   SY+ +L  L    S+   +   D + K  V+ + +T ++    F++  L+ G  K 
Sbjct: 304 HDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKV 363

Query: 135 TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            QK            + + P++    +L+      G I+ ALK+  E   RG + + I +
Sbjct: 364 VQKML---------LQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFY 414

Query: 193 GVFIWKFCENAKLGQVLSMLDEVR--KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            + +   C+  ++ + L++ DE+   + E   I  S++    IHG CK   V+ A+++ +
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSIL----IHGLCKEGFVQRAYQLYE 470

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++R++   P   A R V       G++ E         ++ +      Y   I G +   
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLD 530

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            I EA +L   ++    T      N LI G     D   A      +  KG VP++ T +
Sbjct: 531 GIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYT 590

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L    C+     E+      + AN       +Y V++  LC   ++ E+  +++ M  K
Sbjct: 591 TLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAK 650

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL PD   YN++++  C+   +  A +L++ M    C     TY +LI+     G+++  
Sbjct: 651 GLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDV 710

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
            R+  ++ ++ +     TY ++++  C +  +  A   FN+ +    +++    S  +  
Sbjct: 711 DRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINR 770

Query: 550 LCRRG 554
           LC+RG
Sbjct: 771 LCKRG 775



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/522 (21%), Positives = 224/522 (42%), Gaps = 17/522 (3%)

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG-KNTQKAFSVFNEVKFNCED 151
           + + SR     D++    K+  +   +SV  +   SL+   ++T   + V+NE+K +   
Sbjct: 177 AFAYSRHEMIHDALFVIAKMKDLNFQASVPTY--NSLLHNMRHTDIMWDVYNEIKVSGAP 234

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
                 + L+  L     +++A+    + S++ V  S +     + KFC+   +    S 
Sbjct: 235 QSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVARSF 293

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
              + K  N +++ S    +++HG C    ++EA    D++     +PD + Y  +A+ F
Sbjct: 294 FCLMVK--NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGF 351

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            L+G +     V++K    G+ P    Y   I G      I EA +L +  +S  F ++ 
Sbjct: 352 LLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNV 411

Query: 332 DVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N L+  +  +     A+  F+ M      P     S L   LCK        ++Y+ 
Sbjct: 412 IFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQ 471

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +     F    +   ++  L  +G + EA        R  L  DV  YN +++   R D 
Sbjct: 472 MRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDG 531

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A +L+ +M   G + ++ T+N LI+ F   G++  A ++   +  KG+ P   TYT+
Sbjct: 532 IAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTT 591

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RG 565
           L+   C+  N+Q  F   ++   + V+      +  +  LCR+     + +LL     +G
Sbjct: 592 LMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKG 651

Query: 566 LSSDLGHSDSHVILLKSLADAREVEMAIE--HIKWIQESSPT 605
           L  D   S ++  +++     +E+  A++  ++  +    PT
Sbjct: 652 LLPD---SVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPT 690



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 193/478 (40%), Gaps = 38/478 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++ K   L   ++    V++++ +  +  D   Y  +I    Q  N ++A  +  E
Sbjct: 342 VTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQE 401

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                  +     N LL+ L   G I+ AL +FDEM    +E   I + + I   C+   
Sbjct: 402 TLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGF 461

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + +   + +++R +     + +  AVL+  G  K   + EA    D     +   D + Y
Sbjct: 462 VQRAYQLYEQMRLKRKFPHHFAQRAVLL--GLFKNGNISEARNYFDTWTRMDLMEDVVLY 519

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+ + +  +  + E   +  K  + G+ P    +   I G      + EA+++ EVI  
Sbjct: 520 NIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRL 579

Query: 325 GKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                       L+ +   + + +    F + M     VPT  T + L K LC++NK  E
Sbjct: 580 KGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHE 639

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSF----- 437
            +++ + + A     D  +YN ++   C    + +A  +   M     DP  V++     
Sbjct: 640 SLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLIN 699

Query: 438 -----------------------------YNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                                        Y ++++A C +  +  A   ++QM A G   
Sbjct: 700 ALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVI 759

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +++ Y+ +I++  + G I  A   F  ML +GV PD     ++L    Q+ N  + FE
Sbjct: 760 SIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFE 817



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/442 (18%), Positives = 183/442 (41%), Gaps = 16/442 (3%)

Query: 56  INPYLLTHHSLALGFFNWASQQP-----------NFTHSPLSYHSILKSLSLSRQINAID 104
           +NP L+T+ +L  G     + +             F  + + Y+ +L  L    +I    
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEAL 431

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           ++  +++  ++  D  VY  +I  L +    Q+A+ ++ +++   +        ++L  L
Sbjct: 432 TLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGL 491

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G I  A   FD  +   +    + + + I  +     + + + +  ++ +R    I 
Sbjct: 492 FKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG---IT 548

Query: 225 GSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
            SV+    +I+GFC+   + EA K+L+ +R++   P  + Y  +   +  +G++ E    
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VS 342
           L +     V P    Y   I GL  + ++ E+ +L E + +     D    N +I     
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             +   A+  +N M+     PT  T   L   LC      ++  +   +   +      +
Sbjct: 669 GKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVT 728

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++   C  G++ +A G   +M  KG    +  Y++++   C+  L+  AK  +  M 
Sbjct: 729 YMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMML 788

Query: 463 ASGCSGNLKTYNILISKFSEVG 484
           + G + + +    +++ F + G
Sbjct: 789 SEGVTPDPEICKTVLNAFHQQG 810



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 83/312 (26%)

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIE--------------------KGRVPTL-S 366
           T+ + V++ ++  + ++ P  A+ FF F+I                     KGR   L S
Sbjct: 79  TLSETVVDGVLDRLRTLKPDVAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDS 138

Query: 367 TLSNLSKNLCKRNKS---DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + NL  +    + S   D L+E ++   +N    DM ++            + +A  VI
Sbjct: 139 VIKNLIVDQGLGSASIICDLLLEKFRNWDSNGLVWDMLAFA-----YSRHEMIHDALFVI 193

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD---QMFASG-----CSGNLKTY-- 473
            +MK       V  YNSL+        +R    +WD   ++  SG     C+ ++  +  
Sbjct: 194 AKMKDLNFQASVPTYNSLLHN------MRHTDIMWDVYNEIKVSGAPQSECTTSILIHGL 247

Query: 474 ---------------------------NILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
                                      N ++SKF +VG I+ A   F  M++ G+  D+ 
Sbjct: 248 CEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSF 307

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDV--------MLARSILSTFMISLCRRGHFLV 558
           +Y  LL GLC   ++  A    +    H V         LA+  L   ++S  R+   +V
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARK---VV 364

Query: 559 ATKLLRGLSSDL 570
              LL+GL+ DL
Sbjct: 365 QKMLLQGLNPDL 376


>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
          Length = 880

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 200/483 (41%), Gaps = 49/483 (10%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  I+   S +    A D    + K    TL++S+Y  II +  Q  N ++A ++ 
Sbjct: 378 SLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 437

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIW 197
            E++    D    I ++++     DGY         L +F  +   G   + + +G  I 
Sbjct: 438 REMEEEGIDAPIAIYHTMM-----DGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLIN 492

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            + +  K+ + L  +  V K E    N    + ++I+GF K K    AF V +++     
Sbjct: 493 LYTKVGKISKALE-VSRVMKEEGVKHNLKTYS-MMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--------------------------- 290
           KPD I Y  +   F  MG++      +K+ +KL                           
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 291 --------GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
                   G  P  + +   I GL+ +R+  E   L E+ ++G    +      + G  S
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI--LDEMTLAGVSANEHTYTKIMQGYAS 668

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             D   A  +F  +  +G    + T   L K  CK  +    + V K +SA +   +   
Sbjct: 669 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 728

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++      G + EA  +IQ+MK++G+ PD+  Y S + AC +   +  A +  ++M 
Sbjct: 729 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 788

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G   N+KTY  LI  ++     E AL  +  M   G+ PD   Y  LL  L    ++ 
Sbjct: 789 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIA 848

Query: 523 AAF 525
            A+
Sbjct: 849 EAY 851



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 172/423 (40%), Gaps = 6/423 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           I  SL+   A    +D AL    +M   G+E S + + V +  F +           DE 
Sbjct: 346 IYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEA 405

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            KR +  +N S+    II+  C+   +E A  ++ E+           Y  + + + ++ 
Sbjct: 406 -KRIHKTLNASIYGK-IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVA 463

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  VV K+ ++ G  P    Y   I       +I +A E+  V+       +    +
Sbjct: 464 DEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYS 523

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            +I G V   D  +A   F  M+++G  P +   +N+    C     D  ++  K +   
Sbjct: 524 MMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R +  V   M+R G  P V  +N L+     +   R A
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEK---RQA 640

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ VG+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 641 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 700

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +    ++     + +  +    RRG    A  L++ +  +    D
Sbjct: 701 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760

Query: 575 SHV 577
            H 
Sbjct: 761 IHT 763



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/416 (18%), Positives = 164/416 (39%), Gaps = 47/416 (11%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           FG+ +  +     + +     + +R R   +   S I   +IH +  G+ ++EA   + +
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRAR--GITPTSRIYTSLIHAYAVGRDMDEALSCVRK 369

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI---- 307
           ++    +   + Y ++   F   G     +    + +++      + Y + I        
Sbjct: 370 MKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           +ER     +E+ E  +     I   +++   G     D +  +V F  + E G  PT+ T
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMD---GYTMVADEKKGLVVFKRLKECGFTPTVVT 486

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
              L     K  K  + +EV +V+       ++++Y++M++          A+ V ++M 
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546

Query: 428 RKGLDPDVSFYNSLMEACC-----------------------------------REDLLR 452
           ++G+ PDV  YN+++ A C                                   +   +R
Sbjct: 547 KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            + +++D M   GC   + T+N LI+   E  +   A+ +   M   GV+ +  TYT ++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIM 663

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +G     +   AFE F +  N  + +        + + C+ G    A  + + +S+
Sbjct: 664 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSA 719


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 218/527 (41%), Gaps = 42/527 (7%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI----------------------- 338
            + G   +  + E   L +++V      +  V + LI                       
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 339 --------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                   G+V  I  +S     A+ +F  MI++   P     ++L  +LC  +K D+  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E+   +       D   +N ++   C  GR+ E+  +   M R G+ PD+  Y++L++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C    +  A KL   M + G   +  TYN LI+ + ++  +E AL LF  M   GV+PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            TY  +L+GL Q     AA E++         L  S  +  +  LC+
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 184/425 (43%), Gaps = 49/425 (11%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           ++A  +FDE+  RG   S  G    +     ++    V       R   + +        
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER------EVVL 284
           ++I   C   R++  F  L  +  +  + D IA+  +     L G   ++      ++VL
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPL-----LKGLCADKRTSDAMDIVL 150

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN---ALIGSV 341
           ++  +LG  P    Y   + GL  E R  EA EL +++         DV++    + G  
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
              D   A   ++ M+++G +P + T S++   LCK    D+ +EV   +  N    +  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN +V   C+SG+ +EA G +++M   G++PDV  YNSLM+  C+      A+K++D M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 462 FASGCSGNLKTY-----------------------------------NILISKFSEVGEI 486
              G    + TY                                   +ILI  +++ G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A+ +F  M ++G+ PD  TY +++  LC+   ++ A   F + ++  +     + ++ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL 450

Query: 547 MISLC 551
           + SLC
Sbjct: 451 IHSLC 455



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 13/455 (2%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVF-----NEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175
            Y  II +L + +   KA  V      N V  NC        NS++    S G    A+ 
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY-----NSIVHGYCSSGQPKEAIG 290

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
              +M   GVE   + +   +   C+N +  +   M D + KR   +         ++ G
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR--GLKPEITTYGTLLQG 348

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
           +     + E   +LD +      P+   + I+   +   G V +  +V  K R+ G+ P 
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFN 354
           T  Y   I  L    R+ +A    E ++  + +  + V N+LI S+   D    A     
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+++G        +++  + CK  +  E  +++ ++       D+ +Y+ ++   C +G
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ EA  ++  M   G+ PD   YN+L+   C+   +  A  L+ +M +SG S ++ TYN
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I++    +      A  L+  + E G   + +TY  +L GLC+      A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           D+ L     +  + +L + G    A  L   LS++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 197/475 (41%), Gaps = 48/475 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y SI+ +L  ++ ++    VL  +  N +  +   Y  I+         ++A      
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK- 293

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K + + + P++   NSL+  L  +G    A KMFD M+ RG++     +G  +  +   
Sbjct: 294 -KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++  +LD +  R     N  V ++LI   + K  +V++A  V  ++R +   PD +
Sbjct: 353 GALVEMHGLLD-LMVRNGIHPNHYVFSILIC-AYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  V       G V +     ++     ++P    Y   I  L +  +  +AKEL   +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 323 VSGKFTIDDDVLNALIGSVSS----IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +     +D    N++I S       I+       F+ M+  G  P + T S L    C  
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEK---LFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K DE  ++   + +     D  +YN +++  C   R+ +A  + +EM+  G+ PD+  Y
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASG---------------CSGNL------------- 470
           N +++   +      AK+L+  +  SG               C  NL             
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 471 -------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                  +T+NI+I    +VG  + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  Y+S++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 189/435 (43%), Gaps = 15/435 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  +I +  +     +A  VF+++
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   + + P+     +++ +L   G +++A++ F++M    +    I +   I   C   
Sbjct: 401 RQ--QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 204 KLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           K  +    +L MLD     +    N       II   CK  RV E+ K+ D +     KP
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNS------IIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D I Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L 
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + S   + D    N ++ G   +    +A   +  + E G    LST + +   LCK 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N +DE + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           + + E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 499 KGVAPDATTYTSLLE 513
           K  + +A+T +  L+
Sbjct: 753 KHFSLEASTASLFLD 767



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 164/366 (44%), Gaps = 3/366 (0%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+   A  G +D A+ +F +M  +G+   T+ +G  I   C++ ++   +   +++   +
Sbjct: 380 LICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI--D 437

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             +  G+++   +IH  C   + ++A +++ E+  R    D I +  + +     G V E
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
            E +     ++GV P    Y   I G  +  ++ EA +L   +VS     D    N LI 
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 340 SVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               I     A+V F  M   G  P + T + + + L +  ++    E+Y  ++ +    
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL 617

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +YN+++  LC +    EA  + Q +    L  +   +N ++ A  +      AK L+
Sbjct: 618 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             + A+G   +++TY+++     E G +E    LF +M E G   ++    S++  L Q 
Sbjct: 678 AALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQR 737

Query: 519 TNLQAA 524
            ++  A
Sbjct: 738 GDITRA 743


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 193/432 (44%), Gaps = 7/432 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y +I+ +   S  ++  + ++++++ + I      Y  ++      ++ +K   VF  +K
Sbjct: 377 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK 436

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
             C    P I +   L+ +    G +  A+ +  EM   G++ +   + + I  F     
Sbjct: 437 ECC--FTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHD 494

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
                S+ +E+ K  + +     I  L+I  FCK   ++ A ++L++++    +P   A+
Sbjct: 495 FANAFSIFEEMLK--SGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAF 552

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIV 323
           R + E F + G +     +L   R+ G AP    Y   I GLI + ++  A   L ++ +
Sbjct: 553 RPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSI 612

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
           +G    +      + G  ++ D   A  +F  + E G    +     L +  CK  +   
Sbjct: 613 AGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQS 672

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + V + +S      +   YN+++      G + EA  ++++MK  G+ P++  Y S + 
Sbjct: 673 ALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYIN 732

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           ACC+   ++ A+K+ ++M   G   NLKTY  LI  +++    + AL+ F  M   G+ P
Sbjct: 733 ACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKP 792

Query: 504 DATTYTSLLEGL 515
           D   Y  L+  L
Sbjct: 793 DEAAYHCLVTSL 804



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/505 (21%), Positives = 205/505 (40%), Gaps = 78/505 (15%)

Query: 63  HHSLALGFFNWASQ--QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           HH+ A  F N  ++  +PN       + S++ + +++R +  + S ++++K   I L   
Sbjct: 286 HHARAT-FENMRARGIEPN----AFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIV 340

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  II    +  + Q A ++F E K    D+   I ++++      G +D A ++  EM
Sbjct: 341 TYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREM 400

Query: 181 SHRGVEF-----------------------------------STIGFGVFIWKFCENAKL 205
              G++                                    S I +G  I  + +  K+
Sbjct: 401 EEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKV 460

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            + +++  E+      + + +    ++I GF        AF + +E+     +PD   Y 
Sbjct: 461 TKAIAISKEMES--YGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYN 518

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           ++ E F  MG++     +L+K +K  + P    +R  I G  V                 
Sbjct: 519 LLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV----------------- 561

Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
                            + D + A+   + M   G  PT+ T + L   L K+N+ +  V
Sbjct: 562 -----------------AGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAV 604

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            V   +S      +  +Y +++     +G + +A+    ++K  GL  DV  Y +L+ AC
Sbjct: 605 SVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRAC 664

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+   ++ A  +  +M     + N   YNILI  ++  G++  A  L   M E GV P+ 
Sbjct: 665 CKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNI 724

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
            TYTS +   C+  ++Q A +V  +
Sbjct: 725 HTYTSYINACCKAGDMQRAQKVIEE 749



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/415 (19%), Positives = 172/415 (41%), Gaps = 3/415 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    +   L   +EM   G+E + + + + I  F +        ++  E 
Sbjct: 306 VFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEA 365

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + +   + NG +I   IIH  C+   ++ A +++ E+          AY  +   + ++ 
Sbjct: 366 KAKLGDL-NG-IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQ 423

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  +V ++ ++    P    Y   I   I   ++ +A  + + + S     ++   +
Sbjct: 424 DEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYS 483

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G +   D  +A   F  M++ G  P  +  + L +  CK    D  + + + +   
Sbjct: 484 MLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE 543

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                  ++  ++     +G ++ A  ++  M+R G  P V  YN+L+    +++ +  A
Sbjct: 544 RMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERA 603

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + ++M  +G + N  TY I++  ++  G+I  A   F  + E G+  D   Y +LL  
Sbjct: 604 VSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRA 663

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            C+   +Q+A  V  +     +     + +  +    RRG    A  L++ +  D
Sbjct: 664 CCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED 718



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 186/456 (40%), Gaps = 27/456 (5%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           ++   A  G   +A   F+ M  RG+E +   F   +  +     +  VLS ++E++   
Sbjct: 275 MIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEG 334

Query: 219 -ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E +++  S+    II GF K    + A  +  E + +    + I Y  +       G++
Sbjct: 335 IELTIVTYSI----IIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNM 390

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILG----------LIVERRICEAKELGEVIVSGKF 327
              E ++++  + G+    + Y   + G          LIV  R+ E      +I  G  
Sbjct: 391 DRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCL 450

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
                 L   IG V+      AI     M   G      T S L       +       +
Sbjct: 451 I----NLYIKIGKVT-----KAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSI 501

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           ++ +  +    D   YN+++   C  G +  A  ++++M+++ + P    +  ++E    
Sbjct: 502 FEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV 561

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
              ++ A  + D M  SGC+  + TYN LI    +  ++E A+ + + M   G+ P+  T
Sbjct: 562 AGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHT 621

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           YT ++ G     ++  AFE F K     + L   I  T + + C+ G    A  + R +S
Sbjct: 622 YTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 681

Query: 568 SDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQE 601
           +     ++ V  IL+   A   +V  A + +K ++E
Sbjct: 682 TQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKE 717



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/445 (20%), Positives = 176/445 (39%), Gaps = 65/445 (14%)

Query: 80  FTHSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
           FT S +SY  ++   + + +   AI ++ K+++   I  ++  Y  +I   I   +   A
Sbjct: 440 FTPSIISYGCLINLYIKIGKVTKAI-AISKEMESYGIKHNNKTYSMLISGFIHLHDFANA 498

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           FS+F E+  +       I N L+      G +D A+++ ++M    ++ S   F   I  
Sbjct: 499 FSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEG 558

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRI 254
           F     + + L++LD +R+      +G    V+    +IHG  K  +VE A  VL+++ I
Sbjct: 559 FAVAGDMKRALNILDLMRR------SGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSI 612

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+   Y I+   +   G + +      K ++ G+      Y   +       R+  
Sbjct: 613 AGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQS 672

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           A  +   + + K   +  V N LI G     D   A      M E G  P + T      
Sbjct: 673 ALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHT------ 726

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
                                        Y   ++  C +G ++ A  VI+EM   GL P
Sbjct: 727 -----------------------------YTSYINACCKAGDMQRAQKVIEEMADVGLKP 757

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           ++  Y +L++   +  L   A K +++M  +G   +   Y+ L++               
Sbjct: 758 NLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVT--------------- 802

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQE 518
            ++L +    + +TYT +L  +C+E
Sbjct: 803 -SLLSRATVMEGSTYTGIL-SICRE 825


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 168/364 (46%), Gaps = 15/364 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL---GQVLSMLDE 214
           N ++ +L  +G    A      M   GV+ + + +   I  +C   K     ++   + +
Sbjct: 221 NIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKD 280

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
              + +     S I+ L     CK +R+EEA  VL +L      P+ + Y  + +     
Sbjct: 281 KNLKPDCYTYNSFISRL-----CKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNK 335

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDV 333
           G + +      +    G+      Y   I  L +E+RI EA+++  E+   G   ++ DV
Sbjct: 336 GDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG---VEPDV 392

Query: 334 LNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           +   I   G     + + A+  F+ M+EK   PT+ T ++L     KRN+  E  E +K 
Sbjct: 393 VTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKK 452

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D+  +N ++   C +G +  A+ +++EM    + PD   +N+LM+  CRE  
Sbjct: 453 SIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERK 512

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  AKKL D+M   G   +  +YN LIS +S+ G+++ AL +F  ML  G  P   TY +
Sbjct: 513 VEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNA 572

Query: 511 LLEG 514
           L++G
Sbjct: 573 LIQG 576



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 144/353 (40%), Gaps = 40/353 (11%)

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           I  S++   ++I+  C+  + ++A   +  + +   KP+ + Y  V   + L G      
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAAS 272

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + K  +   + P    Y  FI  L  ERRI EA        SG       VL  L+   
Sbjct: 273 KIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEA--------SG-------VLCKLL--- 314

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                           E G VP   T + L    C +   D+       +        + 
Sbjct: 315 ----------------ESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVF 358

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN+++  L    R+ EA  +I+EM+ KG++PDV  YN  +   CR    + A  L+D+M
Sbjct: 359 TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                   ++TY  LI  F +   +  A   F   +++G+ PD   + +L++G C   N+
Sbjct: 419 VEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNI 478

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
             AF++  +  N  V+      +T M   CR      A KLL     RG+  D
Sbjct: 479 DRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPD 531



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 159/379 (41%), Gaps = 9/379 (2%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +G       +PN     ++Y++++    L  +  A   + K +K   +  D   Y   I 
Sbjct: 240 IGHMEVYGVKPNV----VTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFIS 295

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187
            L + +  ++A  V  ++  +         N+L+    + G +D A    DEM +RG+  
Sbjct: 296 RLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVA 355

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-IHGFCKGKRVEEAF 246
           S   + + I       ++ +   M+ E+R++    +   V+   I I+G+C+    ++A 
Sbjct: 356 SVFTYNLLIHALFLEKRIEEAEDMIKEMREKG---VEPDVVTYNIQINGYCRCGNAKKAL 412

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            + DE+  +  +P    Y  + + F     + E E   KK  K G+ P    +   I G 
Sbjct: 413 SLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGH 472

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTL 365
            V   I  A +L + + + K   D+   N L+ G         A    + M E+G  P  
Sbjct: 473 CVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDH 532

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
            + + L     KR    + +EV+  + +  +   + +YN ++      G    A  +++E
Sbjct: 533 ISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLRE 592

Query: 426 MKRKGLDPDVSFYNSLMEA 444
           M+ KG+ PD S Y  ++EA
Sbjct: 593 MQSKGITPDDSTYLYVIEA 611



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 6/265 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S  +Y+ ++ +L L ++I   + ++K+++   +  D   Y   I    +  N +KA S+F
Sbjct: 356 SVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLF 415

Query: 143 NEVKFNCEDIGP--EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E+    ++I P  E   SL+ V      +  A + F +    G+    I F   I   C
Sbjct: 416 DEMVE--KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHC 473

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
            N  + +   +L E+   +  ++   V    ++ G+C+ ++VEEA K+LDE++ R  KPD
Sbjct: 474 VNGNIDRAFQLLKEMDNAK--VVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPD 531

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  +   +   G + +   V  +   LG  P    Y   I G         A+EL  
Sbjct: 532 HISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLR 591

Query: 321 VIVSGKFTIDDDVLNALIGSVSSID 345
            + S   T DD     +I ++ + D
Sbjct: 592 EMQSKGITPDDSTYLYVIEAMKTND 616



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 122/260 (46%), Gaps = 10/260 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTL--SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            ++F    + + R+   +TL    L    C+  K DE +E   ++  N+     E+ N +
Sbjct: 129 TVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSL 188

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +S L    +++ A+ V +EM +  +   +  +N ++   CRE   + AK     M   G 
Sbjct: 189 LSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGV 248

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N+ TYN +I+ +   G+ E A ++F  M +K + PD  TY S +  LC+E  ++ A  
Sbjct: 249 KPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASG 308

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGH----FLVATKLL-RGLSSDLGHSDSHVILLK 581
           V  K +   ++      +  +   C +G     F    +++ RG+ + +    ++ +L+ 
Sbjct: 309 VLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVF---TYNLLIH 365

Query: 582 SLADAREVEMAIEHIKWIQE 601
           +L   + +E A + IK ++E
Sbjct: 366 ALFLEKRIEEAEDMIKEMRE 385


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 202/454 (44%), Gaps = 24/454 (5%)

Query: 113 NKITLDSSVYRFIIPSLIQG---KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169
           N +T D  VY  +I  L +    ++ Q+   V  +     + +G    +S +      G 
Sbjct: 336 NGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVG---FSSAMDAYVKIGD 392

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR--ENSMINGSV 227
           +   ++++  M + G+  + +   + I  FC+N ++ +   +  ++ K   E S++  S 
Sbjct: 393 LGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSA 452

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +    I GFCK   + + F + +++  + C+PD I Y ++       G V +      + 
Sbjct: 453 L----IAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQA 508

Query: 288 RKLGVAPRTNDYREFILGLIVE---RRICEAKELGEVIVSGKFTIDDDVLNALI---GSV 341
              G++P       F L  +++   R  C    +    + G   I  D +   I   G+ 
Sbjct: 509 VNRGLSPNV-----FTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAA 563

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  A++ F  M++K   P + T   L   LCK  KS   + ++  +  N    D+ 
Sbjct: 564 QFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIA 623

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            YNV+++     G L  A G+   +  +G  PDV  +N+++   C    L  A +L+ +M
Sbjct: 624 IYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKM 683

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-ETN 520
            +     N  T+ ILI  F   G ++ A+ +F  MLE+G  P+  TY+ L+ G  + ++ 
Sbjct: 684 TSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSM 743

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +++  +++N+ + +++       S  +  LC+RG
Sbjct: 744 MESGLKLYNEMLENNIAPNIVSYSILIDGLCKRG 777



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/492 (21%), Positives = 210/492 (42%), Gaps = 52/492 (10%)

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-----KVNKITLDSSVYRFI 125
           F+ A  Q  F    ++ + ILK + +   I   D     V     K N +T  +     +
Sbjct: 259 FHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFST-----L 313

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHR 183
           I +  +  N  KAF +F+ +  N   + P+  + + L+  L   G +++  ++      +
Sbjct: 314 IDAYCKEGNLDKAFVLFDVMAGN--GVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDK 371

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
           G++   +GF   +  + +   LG+V+ +    ++  N  I+ +V++  ++I GFC+  R+
Sbjct: 372 GIKLDVVGFSSAMDAYVKIGDLGRVIQI---YKRMLNEGISPNVVSCSILIKGFCQNGRI 428

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA  +  ++     +P  + Y  +   F   G++ +   + +   K    P T  Y   
Sbjct: 429 LEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVL 488

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
           I GL      C+   +G+                            A+ FF   + +G  
Sbjct: 489 INGL------CKQGLVGD----------------------------ALRFFFQAVNRGLS 514

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + TL+ L  + C+       ++VY ++   +   D  +Y +++      GR+ EA  +
Sbjct: 515 PNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALML 574

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
             +M +K   PDV  Y +L++  C+         ++D M  +  + ++  YN+LI+  S 
Sbjct: 575 FFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSR 634

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G +E AL LF +++E+G  PD  T+ +++   C    L  A ++F K  +  +      
Sbjct: 635 EGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAIT 694

Query: 543 LSTFMISLCRRG 554
            +  + + CR G
Sbjct: 695 FTILIDAFCREG 706



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 18/359 (5%)

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER--- 280
           N SV+   +I  +C+    +++  +   + +   K  F++  +V   + L+GS+ +    
Sbjct: 165 NHSVVYGFLIESYCRKGMFDKSVDIFMHVCV---KGIFVSPNVV---YLLLGSLIDSHCV 218

Query: 281 EVVLKKKRKLGVAPRTNDYR--EFILGLIVERRICE-AKELGEVIVSGKFTIDDDVLNAL 337
           EV++ K  +L  A R   +   EF++   + +   E      + +V G F +D    N +
Sbjct: 219 EVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKI 278

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G     D   A  +FN ++  G  P + T S L    CK    D+   ++ V++ N  
Sbjct: 279 LKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGV 338

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  Y++++  L  +GRL +   ++     KG+  DV  ++S M+A  +   L    +
Sbjct: 339 TPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQ 398

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++ +M   G S N+ + +ILI  F + G I  A  LF  +L+ G  P   TY++L+ G C
Sbjct: 399 IYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFC 458

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
           +  NL+  F ++   +         + S  +  LC++G    A +       RGLS ++
Sbjct: 459 KSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNV 517



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 135/621 (21%), Positives = 246/621 (39%), Gaps = 99/621 (15%)

Query: 13  ISQAIISASNRTRPARKWTPLLEQTLHQLGLRD---SLSPSLVARVINPYLLTHHSLALG 69
           I Q + +  N+  P +   P+L   L    + D   SL P        P+       A+ 
Sbjct: 54  IHQIVKAFHNQQNP-KPLNPILLSKLQLYHVPDVIISLQPK-------PFS------AIR 99

Query: 70  FFNWASQQPNFTHSPLS-------YHSILKSLSLSRQINAIDSVLKQVKVNKITLD---- 118
           FF WA    +F  SPLS        H +L++   SR     D  + Q   +  TLD    
Sbjct: 100 FFEWAE---SFFISPLSAPSFCALLHVLLQNQLFSRAACVFDKFIMQFGNDYDTLDAFRD 156

Query: 119 ----------SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
                     S VY F+I S  +     K+  +F  V      + P +   LL  L    
Sbjct: 157 GFCDLDSTNHSVVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSH 216

Query: 169 YIDNALKMFDEM--SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            ++  +  + E+  + R   FS       +++F  N  + +    ++   +   +++ G 
Sbjct: 217 CVEVIVDKYGELCSAMREQPFS-------VYEFVMNRFMNK--GEVEMGLRFHKALVQGG 267

Query: 227 V-IAVLIIHGFCKGKRVEEAFKVLDE-----LRIRECKPDFIAYRIVAEEFKLMGSVFER 280
             + ++  +   KG  ++    V D+     +RI   KP+ + +  + + +   G++ + 
Sbjct: 268 FGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGP-KPNVVTFSTLIDAYCKEGNLDKA 326

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL---NAL 337
            V+       GV P    Y   I GL    R+ + + L  ++V+    I  DV+   +A+
Sbjct: 327 FVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRL--LLVALDKGIKLDVVGFSSAM 384

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
              V   D    I  +  M+ +G  P + + S L K  C+  +  E   ++  +    + 
Sbjct: 385 DAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFE 444

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
             + +Y+ +++  C SG LR+ + + ++M +K  +PD   Y+ L+   C++ L+  A + 
Sbjct: 445 PSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRF 504

Query: 458 WDQMFASGCSGNL-----------------------------------KTYNILISKFSE 482
           + Q    G S N+                                    TY ILI   ++
Sbjct: 505 FFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQ 564

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G ++ AL LF  ML+K   PD  TY +L++GLC+     A   +F+    + V    +I
Sbjct: 565 FGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAI 624

Query: 543 LSTFMISLCRRGHFLVATKLL 563
            +  +    R GH   A  L 
Sbjct: 625 YNVLINMHSREGHLEAALGLF 645



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 168/375 (44%), Gaps = 6/375 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           ++L+A     G + +   ++++M  +  E  TI + V I   C+   +G  L    +   
Sbjct: 451 SALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVN 510

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    ++ +V  +  ++  FC+ K +  A KV   + +   K D + Y I+ +     G 
Sbjct: 511 RG---LSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGR 567

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V E  ++  +  K    P    Y   I GL   ++      + + +       D  + N 
Sbjct: 568 VDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNV 627

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI   S      +A+  F  ++E+G  P + T + +    C   + D+ V+++  +++  
Sbjct: 628 LINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQ 687

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPA 454
              +  ++ +++   C  GR+ +A  +  +M  +G +P++  Y+ L+    + + ++   
Sbjct: 688 LRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESG 747

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            KL+++M  +  + N+ +Y+ILI    + G ++ A   F   L+K + PD   YT L+ G
Sbjct: 748 LKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRG 807

Query: 515 LCQETNLQAAFEVFN 529
            C+   L  A  +++
Sbjct: 808 YCKVGRLTEAMMLYD 822



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 166/401 (41%), Gaps = 61/401 (15%)

Query: 110 VKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPE--ICNSLLAVL 164
           V++ K+  + S+  Y  +I    +  N +  F ++ + +K  CE   P+  + + L+  L
Sbjct: 436 VQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCE---PDTIVYSVLINGL 492

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE------NAKLGQVLSMLDEVRKR 218
              G + +AL+ F +  +RG+  +       +  FC         K+  ++ ML+     
Sbjct: 493 CKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLN----- 547

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              +   +V   ++I G  +  RV+EA  +  ++  ++ KPD I Y  + +    +    
Sbjct: 548 ---IKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSS 604

Query: 279 EREVVLKKKRKLGVAPRTNDYREFI------------LGL---IVERR------------ 311
               +     K  VAP    Y   I            LGL   +VER             
Sbjct: 605 AGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMI 664

Query: 312 --ICEAKELGEVI-VSGKFTIDDDVLNALIGSVSSIDP-------RSAIVFFNFMIEKGR 361
              C  K L + + +  K T +    NA+  ++  ID          A++ F+ M+E+G 
Sbjct: 665 CCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTIL-IDAFCREGRMDDAMLMFSKMLEEGP 723

Query: 362 VPTLSTLSNLSKNLCK-RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            P L T S L     K ++  +  +++Y  +  N+   ++ SY++++  LC  G ++EA 
Sbjct: 724 EPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEAS 783

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
              +    K L PDV  Y  L+   C+   L  A  L+D M
Sbjct: 784 CAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNM 824



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 116/320 (36%), Gaps = 76/320 (23%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IGPEIC--NSLLAVLASDGYIDNAL 174
           D   Y  +I  L + K +     +F+   F C++ + P+I   N L+ + + +G+++ AL
Sbjct: 586 DVITYCTLIDGLCKLKKSSAGLCIFD---FMCKNAVAPDIAIYNVLINMHSREGHLEAAL 642

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
            +F  +  RG +     F                           N+MI           
Sbjct: 643 GLFVHVVERGPKPDVFTF---------------------------NTMICC--------- 666

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
            +C  KR+++A ++  ++   + +P+ I + I+ + F   G + +  ++  K  + G  P
Sbjct: 667 -YCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEP 725

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
               Y   I G    + + E                                 S +  +N
Sbjct: 726 NLVTYSCLIHGYFKSQSMME---------------------------------SGLKLYN 752

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M+E    P + + S L   LCKR    E    ++         D+ +Y +++   C  G
Sbjct: 753 EMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVG 812

Query: 415 RLREAYGVIQEMKRKGLDPD 434
           RL EA  +   M    L PD
Sbjct: 813 RLTEAMMLYDNMLLNRLTPD 832


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/485 (22%), Positives = 210/485 (43%), Gaps = 25/485 (5%)

Query: 82  HSPLSYHSILKSL----SLSRQINAIDSVLKQ-VKVNKITLDSSVYRFIIPSLIQG--KN 134
           H   SY+ +L  L    S+   +   D + K  V+ + +T ++    F++  L+ G  K 
Sbjct: 304 HDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKV 363

Query: 135 TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
            QK            + + P++    +L+      G I+ ALK+  E   RG + + I +
Sbjct: 364 VQKML---------LQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFY 414

Query: 193 GVFIWKFCENAKLGQVLSMLDEVR--KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
            + +   C+  ++ + L++ DE+   + E   I  S++    IHG CK   V+ A+++ +
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSIL----IHGLCKEGFVQRAYQLYE 470

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++R++   P   A R V       G++ E         ++ +      Y   I G +   
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLD 530

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            I EA +L   ++    T      N LI G     D   A      +  KG VP++ T +
Sbjct: 531 GIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYT 590

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L    C+     E+      + AN       +Y V++  LC   ++ E+  +++ M  K
Sbjct: 591 TLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAK 650

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL PD   YN++++  C+   +  A +L++ M    C     TY +LI+     G+++  
Sbjct: 651 GLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDV 710

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
            R+  ++ ++ +     TY ++++  C +  +  A   FN+ +    +++    S  +  
Sbjct: 711 DRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINR 770

Query: 550 LCRRG 554
           LC+RG
Sbjct: 771 LCKRG 775



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 194/449 (43%), Gaps = 13/449 (2%)

Query: 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYI 170
           N +  DS  Y  ++  L    +  +A    ++++ +   + P++   N+L       G +
Sbjct: 300 NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKH--GVEPDVVTYNTLAKGFLLLGLM 357

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
             A K+  +M  +G+    + +   I   C+   + + L +  E   R   +    +   
Sbjct: 358 SGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKL--NVIFYN 415

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVLKKK 287
           +++   CK  R+EEA  + DE+     +PDFI Y I+       G V   ++    ++ K
Sbjct: 416 MLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLK 475

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           RK    P     R  +LGL     I EA+   +         D  + N +I     +D  
Sbjct: 476 RKF---PHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGI 532

Query: 348 S-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+  +  MIE+G  P++ T + L    C+R    E  ++ +V+        + +Y  +
Sbjct: 533 AEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTL 592

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C  G ++E +  + EM+   + P    Y  L++  CR++ +  + +L + M+A G 
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGL 652

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +  TYN +I  F +  EI  AL+L++ ML     P   TY  L+  LC   +L+    
Sbjct: 653 LPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGH 555
           +     + ++ L +    T + + C +G 
Sbjct: 713 MVVSIEDRNITLKKXTYMTIIKAHCAKGQ 741



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/527 (21%), Positives = 226/527 (42%), Gaps = 27/527 (5%)

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG-KNTQKAFSVFNEVKFNCED 151
           + + SR     D++    K+  +   +SV  +   SL+   ++T   + V+NE+K +   
Sbjct: 177 AFAYSRHEMIHDALFVIAKMKDLNFQASVPTY--NSLLHNMRHTDIMWDVYNEIKVSGAP 234

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
                 + L+  L     +++A+    + S++ V  S +     + KFC+       + +
Sbjct: 235 QSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCK-------VGL 286

Query: 212 LDEVRKR-----ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +D  R       +N +++ S    +++HG C    ++EA    D++     +PD + Y  
Sbjct: 287 IDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNT 346

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +A+ F L+G +     V++K    G+ P    Y   I G      I EA +L +  +S  
Sbjct: 347 LAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRG 406

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F ++    N L+  +  +     A+  F+ M      P     S L   LCK        
Sbjct: 407 FKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAY 466

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++Y+ +     F    +   ++  L  +G + EA        R  L  DV  YN +++  
Sbjct: 467 QLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGY 526

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            R D +  A +L+ +M   G + ++ T+N LI+ F   G++  A ++   +  KG+ P  
Sbjct: 527 VRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSV 586

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-- 563
            TYT+L+   C+  N+Q  F   ++   + V+      +  +  LCR+     + +LL  
Sbjct: 587 VTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEY 646

Query: 564 ---RGLSSDLGHSDSHVILLKSLADAREVEMAIE--HIKWIQESSPT 605
              +GL  D   S ++  +++     +E+  A++  ++  +    PT
Sbjct: 647 MYAKGLLPD---SVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPT 690



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 193/478 (40%), Gaps = 38/478 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++ K   L   ++    V++++ +  +  D   Y  +I    Q  N ++A  +  E
Sbjct: 342 VTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQE 401

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                  +     N LL+ L   G I+ AL +FDEM    +E   I + + I   C+   
Sbjct: 402 TLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGF 461

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + +   + +++R +     + +  AVL+  G  K   + EA    D     +   D + Y
Sbjct: 462 VQRAYQLYEQMRLKRKFPHHFAQRAVLL--GLFKNGNISEARNYFDTWTRMDLMEDVVLY 519

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+ + +  +  + E   +  K  + G+ P    +   I G      + EA+++ EVI  
Sbjct: 520 NIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRL 579

Query: 325 GKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                       L+ +   + + +    F + M     VPT  T + L K LC++NK  E
Sbjct: 580 KGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHE 639

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSF----- 437
            +++ + + A     D  +YN ++   C    + +A  +   M     DP  V++     
Sbjct: 640 SLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLIN 699

Query: 438 -----------------------------YNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                                        Y ++++A C +  +  A   ++QM A G   
Sbjct: 700 ALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVI 759

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           +++ Y+ +I++  + G I  A   F  ML +GV PD     ++L    Q+ N  + FE
Sbjct: 760 SIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFE 817



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/442 (18%), Positives = 183/442 (41%), Gaps = 16/442 (3%)

Query: 56  INPYLLTHHSLALGFFNWASQQP-----------NFTHSPLSYHSILKSLSLSRQINAID 104
           +NP L+T+ +L  G     + +             F  + + Y+ +L  L    +I    
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEAL 431

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           ++  +++  ++  D  VY  +I  L +    Q+A+ ++ +++   +        ++L  L
Sbjct: 432 TLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGL 491

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G I  A   FD  +   +    + + + I  +     + + + +  ++ +R    I 
Sbjct: 492 FKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG---IT 548

Query: 225 GSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
            SV+    +I+GFC+   + EA K+L+ +R++   P  + Y  +   +  +G++ E    
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VS 342
           L +     V P    Y   I GL  + ++ E+ +L E + +     D    N +I     
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             +   A+  +N M+     PT  T   L   LC      ++  +   +   +      +
Sbjct: 669 GKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXT 728

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  ++   C  G++ +A G   +M  KG    +  Y++++   C+  L+  AK  +  M 
Sbjct: 729 YMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMML 788

Query: 463 ASGCSGNLKTYNILISKFSEVG 484
           + G + + +    +++ F + G
Sbjct: 789 SEGVTPDPEICKTVLNAFHQQG 810



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 83/312 (26%)

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIE--------------------KGRVPTL-S 366
           T+ + V++ ++  + ++ P  A+ FF F+I                     KGR   L S
Sbjct: 79  TLSETVVDGVLDRLRTLKPDVAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDS 138

Query: 367 TLSNLSKNLCKRNKS---DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            + NL  +    + S   D L+E ++   +N    DM ++            + +A  VI
Sbjct: 139 VIKNLIVDQGLGSASIICDLLLEKFRNWDSNGLVWDMLAFA-----YSRHEMIHDALFVI 193

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD---QMFASG-----CSGNLKTY-- 473
            +MK       V  YNSL+        +R    +WD   ++  SG     C+ ++  +  
Sbjct: 194 AKMKDLNFQASVPTYNSLLHN------MRHTDIMWDVYNEIKVSGAPQSECTTSILIHGL 247

Query: 474 ---------------------------NILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
                                      N ++SKF +VG I+ A   F  M++ G+  D+ 
Sbjct: 248 CEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSF 307

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDV--------MLARSILSTFMISLCRRGHFLV 558
           +Y  LL GLC   ++  A    +    H V         LA+  L   ++S  R+   +V
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARK---VV 364

Query: 559 ATKLLRGLSSDL 570
              LL+GL+ DL
Sbjct: 365 QKMLLQGLNPDL 376


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 199/487 (40%), Gaps = 78/487 (16%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           +SPSLV  V+   L     +AL FF WA +Q  F ++  SY++++++L   +Q   I S+
Sbjct: 121 VSPSLVVEVLK-RLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSL 179

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           + ++K  K+ L+   +  I     + +  ++A   F  ++     +     N LL  L  
Sbjct: 180 VNEMKSRKL-LNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCK 238

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV--RKRENSMIN 224
             +++ A K+FD+M  R        + + +  + +   L +    LDEV    + +    
Sbjct: 239 SRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLR----LDEVYLEMKYDGFEP 294

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V   ++I  +CK K+ + A ++  E+  + CKP                         
Sbjct: 295 DVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKP------------------------- 329

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
                    P    Y   I GL  E+R+ EA E  E   S  FT +    N+L+G+    
Sbjct: 330 --------TPHV--YCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAY--- 376

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                                          C   + D+  +V   +  +    +  +Y+
Sbjct: 377 -------------------------------CWSMRIDDAFQVIDEMRKHSAGPNSRTYD 405

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +++  L  + R  EAY   Q+M  + G +P VS Y  ++   C ED +  AK++WDQM A
Sbjct: 406 IILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKA 465

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G    +  Y+ LI+      ++  A + F  ML+ G+ P A  +++L + L  E     
Sbjct: 466 KGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDE 525

Query: 524 AFEVFNK 530
           A  +  K
Sbjct: 526 ALNLARK 532



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 77/186 (41%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M E G     S  + L   LCK    ++  +V+  +    +  D++SY +++ 
Sbjct: 210 AIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLE 269

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                  L     V  EMK  G +PDV  Y  L+ A C+      A +L+ +M A  C  
Sbjct: 270 GWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKP 329

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
               Y  LI+       +  AL  F      G  P+A TY SL+   C    +  AF+V 
Sbjct: 330 TPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVI 389

Query: 529 NKSVNH 534
           ++   H
Sbjct: 390 DEMRKH 395



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 1/225 (0%)

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTL 368
           R++ EA E  E +    F ++    N L+ ++  S     A   F+ M ++  VP + + 
Sbjct: 205 RKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSY 264

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L +   K +    L EVY  +  + +  D+ +Y +++S  C + +   A  +  EM+ 
Sbjct: 265 TILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEA 324

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           K   P    Y +L+     E  L  A + +++  + G +    TYN L+  +     I+ 
Sbjct: 325 KNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDD 384

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           A ++   M +    P++ TY  +L  L +      A+  F K  N
Sbjct: 385 AFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSN 429


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/510 (21%), Positives = 212/510 (41%), Gaps = 90/510 (17%)

Query: 66  LALGFFNWASQQPNFTHSPLSY--HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           L L FF WAS+Q   ++S   +   S+LK L+  R    I+++L+ +K  ++        
Sbjct: 76  LGLNFFEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALS 135

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMS 181
           F+I +       ++A  ++N V  +  +  P++  CNSLL +L   G ++ A K++DEM 
Sbjct: 136 FVISAYAGSGLVKEALELYNTV-IDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMV 194

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            R                                    N  ++   + + +  G CK  +
Sbjct: 195 DR------------------------------------NGDVDNYTVCI-VTKGLCKEGK 217

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           VEE   ++++   + C P+ + Y  + + +   G +    ++ K+ +  G  P    Y  
Sbjct: 218 VEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGA 277

Query: 302 FILGLI-------VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
            I           V++ + E KE G  +      I + +++A       I+   A+    
Sbjct: 278 MINAFCKKGKFEAVDKLLVEMKERGLAV---SLQIFNGIIDARFKHGCEIEAADAV---R 331

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
           +MIE G  P ++T                                   YN +++  C+ G
Sbjct: 332 WMIESGCEPDMAT-----------------------------------YNTLINGSCSKG 356

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++REA  +++   R+GL P+   Y  L+ A  +      A +L  +M   G + +L  Y 
Sbjct: 357 KVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYG 416

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            L+      GE++ AL +   M+E+G+ PDA  Y  L+ GLC++    AA ++  + ++ 
Sbjct: 417 ALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQ 476

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +V     + +T +    R G+   A KL +
Sbjct: 477 NVTPDAFVNATLVDGFIRHGNLDEAKKLFQ 506



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 164/375 (43%), Gaps = 14/375 (3%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+   + +G    A ++  EMS RG     I +G  +       ++   L++ D++ +R 
Sbjct: 383 LIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMER- 441

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             ++  + I  +++ G CK  R   A ++L E+  +   PD      + + F   G++ E
Sbjct: 442 -GILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDE 500

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
            + + +   + G+     +    I G      + +A    + + +G  + D+   + +I 
Sbjct: 501 AKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIID 560

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G V   D R A+  F  M++K   P + T ++L    C+    +   +V++ + +  +  
Sbjct: 561 GYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEP 620

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK-- 456
           ++ +Y +++ + C  G+L +A    ++M      P+ + +N L+      + +  + K  
Sbjct: 621 NVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRS 680

Query: 457 ---------LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                     +  M + G    +  YN ++    +   ++ AL+L   M+ KG  PD  +
Sbjct: 681 NSQPNLTLEFFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVS 740

Query: 508 YTSLLEGLCQETNLQ 522
           + +LL GLC E  LQ
Sbjct: 741 FIALLHGLCLEGRLQ 755



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 171/430 (39%), Gaps = 3/430 (0%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++     +  I   + + K++KV         Y  +I +  +    +    +  E+K
Sbjct: 240 YNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMK 299

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
                +  +I N ++      G    A      M   G E     +   I   C   K+ 
Sbjct: 300 ERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVR 359

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +   +L+   +R   +         +IH F K      A ++L E+  R    D IAY  
Sbjct: 360 EAEELLEHAIRR--GLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGA 417

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +     + G V     V  K  + G+ P  N Y   + GL  + R   AK+L   ++   
Sbjct: 418 LVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQN 477

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
            T D  V   L+ G +   +   A   F   IE+G   ++   + + K  CK    ++ +
Sbjct: 478 VTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDAL 537

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
             +K +    +  D  +Y+ ++        LR A  +   M +K   P+V  + SL+   
Sbjct: 538 LCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGF 597

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           CR   L  A+K++++M + G   N+ TY ILI  F + G++  A   F  ML     P+ 
Sbjct: 598 CRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPND 657

Query: 506 TTYTSLLEGL 515
            T+  L+ GL
Sbjct: 658 ATFNYLVNGL 667



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 201/474 (42%), Gaps = 32/474 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNTQKAFSVFNE 144
           +Y +++ +     +  A+D +L ++K   + +   ++  II +  + G   + A +V   
Sbjct: 274 TYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWM 333

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++  CE   P++   N+L+    S G +  A ++ +    RG+  +   +   I  F +N
Sbjct: 334 IESGCE---PDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKN 390

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +  +   +L E+ +R +++    +IA   ++HG      V+ A  V D++  R   PD 
Sbjct: 391 GEYVRASELLIEMSERGHTL---DLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDA 447

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y ++       G     + +L +     V P        + G I    + EAK+L ++
Sbjct: 448 NIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQL 507

Query: 322 IVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
            +  +  ID  V+  NA+I G         A++ F  M      P   T S +     K+
Sbjct: 508 TI--ERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQ 565

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N     + ++ ++       ++ ++  +++  C +G L  A  V +EM+  G +P+V  Y
Sbjct: 566 NDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTY 625

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA--------- 489
             L+   C+E  L  A   ++QM  + C  N  T+N L++  +    I  +         
Sbjct: 626 TILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPN 685

Query: 490 --LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             L  F  M+  G       Y S+L  LCQ   ++ A ++      HD M+++ 
Sbjct: 686 LTLEFFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQL------HDKMMSKG 733



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 146/358 (40%), Gaps = 28/358 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y +++  L ++ +++   +V  ++    I  D+++Y  ++  L +      A  +   
Sbjct: 413 IAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLL-- 470

Query: 145 VKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           V+   +++ P+  +  +L+      G +D A K+F     RG++ S +     I  +C+ 
Sbjct: 471 VEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKY 530

Query: 203 AKLGQVLSMLDEVRKRENSMING-----SVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
             +   L       KR   M NG           II G+ K   +  A ++   +  + C
Sbjct: 531 GMMNDALLCF----KR---MFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTC 583

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP+ + +  +   F   G +   E V ++ R  G  P    Y   I     E ++ +A  
Sbjct: 584 KPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACF 643

Query: 318 LGEVIVSGKFTIDDDVLNALIGSV------------SSIDPRSAIVFFNFMIEKGRVPTL 365
             E ++  K   +D   N L+  +            S+  P   + FF  MI  G    +
Sbjct: 644 FFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFFGMMISDGWDWRI 703

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
           +  +++   LC+       ++++  + +  +  D  S+  ++  LC  GRL++   VI
Sbjct: 704 AAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEGRLQDWNNVI 761


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 115/520 (22%), Positives = 220/520 (42%), Gaps = 61/520 (11%)

Query: 45  DSLSPSLVARVINPYLLTHHSL--------ALGFFNWASQQ---PNFTHSPLSYHSILKS 93
           D  SP +V+     Y +  H L        A   FN   Q+   PN     ++Y+SI+ +
Sbjct: 266 DGCSPDVVS-----YTMVIHGLFMEGEISKACNLFNEMVQKGVVPNV----VTYNSIVHA 316

Query: 94  LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153
           L  +R ++  + VL+Q+  N I  D   Y  +I         ++A  +F E+    E + 
Sbjct: 317 LCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR--EGLI 374

Query: 154 PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P+I   NSL+  L        A ++F  ++ +G +   I + + +  +    +   + ++
Sbjct: 375 PDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNL 434

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
              +   +N ++  S    ++I+   K   ++EA  +  E+R +   P+ + Y  V    
Sbjct: 435 FHSMT--DNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTID 330
             MG + +    L +   +G+ P T  Y   I G      + +AKEL  E++  G     
Sbjct: 493 CRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGI---- 548

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
                          PR  I FF+ +I                +LC   +     +V+ +
Sbjct: 549 ---------------PRPNITFFSSIIH---------------SLCNEGRVMNAQDVFNL 578

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +       D+ ++N ++   C  G++ +A+GV+  M   G +PDV  Y++L+    +   
Sbjct: 579 VIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGR 638

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +     L+ +M          TY++++      G    A ++FH M+E G A   +TYT 
Sbjct: 639 IDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTI 698

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           +L+GLC+      A  +F+K    ++    +IL+T + +L
Sbjct: 699 ILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 178/415 (42%), Gaps = 30/415 (7%)

Query: 151 DIGPEICNSLL-AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           D+GP     LL A L +DG + N                      F+   C   +  + L
Sbjct: 182 DLGPAFFARLLRAGLRTDGIVTN---------------------TFLKCLCYAKRTDEAL 220

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE---CKPDFIAYRI 266
           SML   R  E   +  +     +I   C G R +EA  +L  LR+ +   C PD ++Y +
Sbjct: 221 SMLLH-RMSELGCVPDAFSYNTVIKSLCGGSRSQEALDML--LRMTKGDGCSPDVVSYTM 277

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           V     + G + +   +  +  + GV P    Y   +  L   R + +A+ +   +    
Sbjct: 278 VIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNS 337

Query: 327 FTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D+    A+I   S +   + A   F  M  +G +P + T ++L  +LCK  +S E  
Sbjct: 338 IQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAA 397

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           E++  ++   +  D+ SY++++    T GR  +   +   M   G+  D   +N L+ A 
Sbjct: 398 EIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAH 457

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +  ++  A  ++ +M   G S N+ TY  +I+    +G +  A+     M+  G+ P+ 
Sbjct: 458 AKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNT 517

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR-SILSTFMISLCRRGHFLVA 559
             Y SL++G C   +L  A E+ ++ ++  +     +  S+ + SLC  G  + A
Sbjct: 518 VVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNA 572



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 176/422 (41%), Gaps = 32/422 (7%)

Query: 82  HSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           H P  +SY  +L   +   +   ++++   +  N I  DS  +  +I +  +     +A 
Sbjct: 408 HKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEAL 467

Query: 140 SVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
            +F E++   + + P +    +++A L   G + +A++   +M   G++ +T+ +   I 
Sbjct: 468 LIFTEMR--GQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQ 525

Query: 198 KFCENAKLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
            FC +  L +    V  M+D+   R N     S     IIH  C   RV  A  V + + 
Sbjct: 526 GFCTHGDLIKAKELVSEMMDQGIPRPNITFFSS-----IIHSLCNEGRVMNAQDVFNLVI 580

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
               +PD   +  + + + L+G + +   VL      G  P    Y   I G     RI 
Sbjct: 581 HIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRID 640

Query: 314 EA---------KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           +          K +    V+    +D        G   +    +A   F+ MIE G   +
Sbjct: 641 DGLILFREMLCKRVKPTTVTYSLVLD--------GLFRAGRTSAAKKMFHEMIESGTAMS 692

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
           +ST + + + LC+ N +DE + ++  L A +   ++   N M+  L    R  EA+ +  
Sbjct: 693 ISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFA 752

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
            +   GL P+ S Y  ++    +E  +  A  ++  M  +GC+ + +  N +I    + G
Sbjct: 753 SVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKG 812

Query: 485 EI 486
           EI
Sbjct: 813 EI 814


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 146/578 (25%), Positives = 238/578 (41%), Gaps = 81/578 (14%)

Query: 9   LATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLAL 68
           L T I+ ++I   N   P+ K   +  Q L Q  L   L  ++V +VI  Y  T+   AL
Sbjct: 20  LVTSIT-SVIQRLNPQNPSPK--NISSQPLDQFSL--CLGSNIVTKVI--YEQTNPYHAL 72

Query: 69  GFFNWASQ---QPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
            FFNWAS     PN + H+   Y +I   L     I+   S+LK    NK++       F
Sbjct: 73  FFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS--NKLS------DF 124

Query: 125 IIPSLIQG----KNTQKAFSVFNEVKFNCEDIGPEIC----NSLLAVLASDGYIDNALKM 176
            I  LI+      N + A   F++ K     I    C    NSLL VL       N++K+
Sbjct: 125 FISKLIKAYGDRGNVKAAIFWFHQAK----QIENGACLYSYNSLLGVLVRV----NSIKL 176

Query: 177 FDEMSHRGVEFSTI-----GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            +E  H+ V+ + +      +   I  +C+   +     + D +  + N +   +     
Sbjct: 177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNT----- 231

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +I+GFCK   +E A  V D +   E C P+ + Y  + + +   G + E +  + +    
Sbjct: 232 MINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNR 291

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   I GL +  R+ EAK L   +    F   D+V                 
Sbjct: 292 GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF--KDNV----------------- 332

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
                          ST  ++ K LC   K D+ V   + +   +   D++SY V+++  
Sbjct: 333 ---------------STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF 377

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G+  EA  +++EM+ +GL P V  +N++         L  A  L  QM    C  N 
Sbjct: 378 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF 437

Query: 471 KTYNILISKFSEV-GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            +YN +I       G ++    L   M+  G   D T Y+ LL+G C+E N++   ++ +
Sbjct: 438 VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 497

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           + V    ++     S  +  LC +G    A KL    S
Sbjct: 498 EMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFDTCS 535


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 170/389 (43%), Gaps = 40/389 (10%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L  +G ++ AL   D +   G   + + +G+ I   C   K+GQ  + L  +R+ E  ++
Sbjct: 133 LCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLC---KMGQTRAALQVLRQIEGKLV 189

Query: 224 NGSVIAV-LIIHGFCKGKRV-----------------------------------EEAFK 247
           N +V+    II G CK K V                                   ++AF+
Sbjct: 190 NTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFR 249

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           + +E+ ++   PD   + I+ +     G + E + V+    K GV P    Y   + G  
Sbjct: 250 LFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYC 309

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLS 366
           +   + +AK +  +I   +   +    N +I     I     A+  F+ M  +G  P   
Sbjct: 310 LVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKV 369

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L   LCK  +     E+   +  N    D+ +YN ++   C +  + +A  +++++
Sbjct: 370 TYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKI 429

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K  G+ P++  YN L++  C+   L+ A+ ++  +   G + N  TYNI+I+   + G  
Sbjct: 430 KEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLF 489

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           + A  L   M + G+ PDA TY ++++ L
Sbjct: 490 DEAEVLLSKMEDNGIIPDAVTYETIIQAL 518



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A   ++ MI K   PT+ T S+L    C   K  +   ++  +   +   D  ++N++V 
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVD 271

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G+++EA  VI  M ++G++P V  YN+LM+  C  + +  AK +   +     + 
Sbjct: 272 ALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAP 331

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N ++YNI+I+ F ++  ++ AL LFH M  +G+AP   TY SL++GLC+   +  A+E+ 
Sbjct: 332 NSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELV 391

Query: 529 ----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
               N  +  D++   S++  F    C+  H   A  L++
Sbjct: 392 DEMHNNCIPADIVTYNSLIDVF----CKNQHVDKAIALVK 427



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 25/192 (13%)

Query: 425 EMKRKGLDPDVSFYNSLMEAC----------------------CREDLLRPAKKLWDQMF 462
           +M+ KG+ PD+ F  S++  C                      C    +  A    D + 
Sbjct: 92  QMESKGVKPDL-FTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVL 150

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G   N  TY ILI+   ++G+   AL++   +  K V  +   Y+++++GLC++  + 
Sbjct: 151 ALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVT 210

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILL 580
            A+ ++++ +   +       S+ +   C  G F  A +L   +     + D++   IL+
Sbjct: 211 DAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILV 270

Query: 581 KSLADAREVEMA 592
            +L    +++ A
Sbjct: 271 DALCKEGKIKEA 282



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/188 (17%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ ++      + ++    +  ++    I      Y  +I  L +      A+ + +E+
Sbjct: 335 SYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEM 394

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             NC        NSL+ V   + ++D A+ +  ++   G++ +   + + I   C+  +L
Sbjct: 395 HNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQL 454

Query: 206 GQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
                +  ++      +I G  +      ++I+G CK    +EA  +L ++      PD 
Sbjct: 455 KNAQDVFQDL------LIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDA 508

Query: 262 IAYRIVAE 269
           + Y  + +
Sbjct: 509 VTYETIIQ 516


>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
 gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
          Length = 448

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 21/373 (5%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  M   M   G +   +  G+ + KFCE  ++G+V  +  E+        NG  + 
Sbjct: 26  VDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELES------NGVAVG 79

Query: 230 VLIIHG-----FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +L  +       C G   +  FK  D        P  +AY+ + +     G   E   V+
Sbjct: 80  MLAYNAILKALMCSGD-FDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVV 138

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---V 341
            +  K  V P    Y   I  L    R  +A ++ +++V  +   + DV  +L+ +    
Sbjct: 139 GEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRT 197

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +D   A   F  MI++G  P+ ST   L + LC   +S    +++  + +  +  D  
Sbjct: 198 RKLD--GAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDEN 255

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEM--KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           +Y  ++   C +GR+ EA  + +E+    K L  D   YN L+E  CR   +  A ++  
Sbjct: 256 TYASLIYGCCMAGRITEAKVLFKEVLEGEKAL-LDAGIYNVLIEGLCRASKVEEALEVTA 314

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M   GC   L+TYN LI  F +  E++ AL+LF  M EKG +P+   Y++ ++GLC+  
Sbjct: 315 GMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVG 374

Query: 520 NLQAAFEVFNKSV 532
            +  A E F +SV
Sbjct: 375 KINEAHEFFQQSV 387



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 48/351 (13%)

Query: 330 DDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           D D  N L+     +SS+D   A++  + M+ +G  P + T   L    C+  +  E+ E
Sbjct: 9   DRDSYNLLVRGLTKLSSVDQARAML--STMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCE 66

Query: 387 VYKVLSANDYFTDMESYN-----------------------------------VMVSFLC 411
           +++ L +N     M +YN                                    M+  L 
Sbjct: 67  LFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLI 126

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G+ REA  V+ EM +K + PD   Y +L+   C+ +    A K++D M       NL 
Sbjct: 127 KTGKTREASEVVGEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLD 185

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            Y  L++      +++GA RLF  M+++G  P A+TY  LL  LC       A+++ +  
Sbjct: 186 VYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSM 245

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRG-LSSDLGHSDSHV--ILLKSLADARE 588
            +   +   +  ++ +   C  G    A  L +  L  +    D+ +  +L++ L  A +
Sbjct: 246 RSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASK 305

Query: 589 VEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
           VE A+E    + +    PT LQ  +A L      ++  +  L L   ++EK
Sbjct: 306 VEEALEVTAGMVDKGCIPT-LQTYNA-LIMGFFKANEVDKALQLFRVMEEK 354



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 176/438 (40%), Gaps = 29/438 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ +++ L+    ++   ++L  +       D      ++    + K   +   +F E+
Sbjct: 12  SYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQEL 71

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + N   +G    N++L  L   G  D   K  D     G     + +   +    +  K 
Sbjct: 72  ESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKT 131

Query: 206 GQVLSMLDEVRKRE--NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            +   ++ E+ K+   + M   ++I+VL     CK  R ++A KV D +  +E  P+   
Sbjct: 132 REASEVVGEMIKKSVPDGMTYTALISVL-----CKHNRADDAMKVFDIMVEKEIVPNLDV 186

Query: 264 Y----------RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           Y          R +   ++L   + +R          G  P  + Y   +  L    R  
Sbjct: 187 YTSLLAAHCRTRKLDGAYRLFVEMIQR----------GYGPSASTYGLLLRCLCNGGRSY 236

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN-L 371
            A ++   + S     D++   +LI G   +     A V F  ++E  +    + + N L
Sbjct: 237 LAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVL 296

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
            + LC+ +K +E +EV   +        +++YN ++     +  + +A  + + M+ KG 
Sbjct: 297 IEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGF 356

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            P+   Y++ ++  C+   +  A + + Q    GC  +  TYN LI        ++ A R
Sbjct: 357 SPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHR 416

Query: 492 LFHNMLEKGVAPDATTYT 509
           L+  M E+G   D +  T
Sbjct: 417 LYREMGERGYIADRSLRT 434



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 45/108 (41%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M   G+ PD   YN L+    +   +  A+ +   M   G   ++ T  +L+ KF E+  
Sbjct: 1   MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           +     LF  +   GVA     Y ++L+ L    +    F+  + +V 
Sbjct: 61  VGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVG 108


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 165/411 (40%), Gaps = 46/411 (11%)

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L  +  +  A KM DEM+ +G     + +   +   C+       L  LDE  +   +M 
Sbjct: 146 LCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCK-------LDRLDEATEVLAAMP 198

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             +     I+   C+  R++E F V+ ++  R  +P+ I Y  + + F   G +     +
Sbjct: 199 PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAI 258

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L +    G  P    +   + GL  + R+ +A ++                         
Sbjct: 259 LARMVITGCTPNVVTFTALVRGLFDDGRVHDALDM------------------------- 293

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    + +M+ +G  P+  + + L + LC          +   +  +  F ++ +Y
Sbjct: 294 ---------WRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTY 344

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++     +G L  A  +  +M R G  P+V  Y ++++  C++ +   AK L D+M  
Sbjct: 345 STLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLL 404

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
             C  N  T+N LI    +   +  AL +FH M   G  P+  TY  L+ GL +E N   
Sbjct: 405 ENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGD 464

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSD 569
           A  +  +  +H + L+    +T +  LC     R     V   +++G+  +
Sbjct: 465 ALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPN 515



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 181/443 (40%), Gaps = 62/443 (13%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY++I+ +L    ++  + SV+  +          V R + P++I       AF    E+
Sbjct: 203 SYNAIVLALCREFRMQEVFSVVSDM----------VGRGLQPNVITYTTIVDAFCKAGEL 252

Query: 146 KFNCEDIG--------PEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           +  C  +         P +    +L+  L  DG + +AL M+  M   G   ST+ + + 
Sbjct: 253 RMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNIL 312

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           I   C    L    S+L+ + ++     N    + LI  GF K   +  A  + +++   
Sbjct: 313 IRGLCSVGDLKGASSILNSM-EQHGCFPNVRTYSTLI-DGFSKAGDLGGAISIWNDMSRS 370

Query: 256 ECKPDFIAYRIVAEEF--KLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRI 312
            CKP+ + Y  + + F  KLM   F +   L  K  L    P T  +   I      R +
Sbjct: 371 GCKPNVVVYTNMVDVFCKKLM---FNQAKSLIDKMLLENCPPNTVTFNTLI------RSL 421

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
           C+ + +G                             A+  F+ M   G VP   T + L 
Sbjct: 422 CDCRRVGR----------------------------ALGVFHEMRRHGCVPNGRTYNELI 453

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
             L +     + + +   + ++     + +YN +VS LC +   REA   + +M  +G+ 
Sbjct: 454 HGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 513

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+   +++++ A C+E  +R A  +   M    C  N+  Y IL+++     ++  A+  
Sbjct: 514 PNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTY 573

Query: 493 FHNMLEKGVAPDATTYTSLLEGL 515
              ML +G+ P+  T+  L+ G+
Sbjct: 574 LLKMLYEGIYPNTVTWNVLVRGV 596



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 92/237 (38%), Gaps = 3/237 (1%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  + W   +  +  S +SY+ +++ L     +    S+L  ++ +    +   Y  +I
Sbjct: 290 ALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLI 348

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
               +  +   A S++N++  +       +  +++ V       + A  + D+M      
Sbjct: 349 DGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCP 408

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +T+ F   I   C+  ++G+ L +  E+R R   + NG     L IHG  +     +A 
Sbjct: 409 PNTVTFNTLIRSLCDCRRVGRALGVFHEMR-RHGCVPNGRTYNEL-IHGLFREGNCGDAL 466

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            ++ E++    +   + Y  V           E  V + K    G+ P    +   I
Sbjct: 467 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAII 523


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 35/338 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G CK   +  A ++++E++I+ C+P+ I Y I+ + F   G + E   VL +    G
Sbjct: 20  LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 79

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           +A     Y   I  L  + ++                   D LN + G +SS        
Sbjct: 80  LALNAVGYNCLISALCKDEKV------------------QDALN-MFGDMSS-------- 112

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
                  KG  P + T ++L   LCK NK +E + +Y+ +       +  +YN ++    
Sbjct: 113 -------KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 165

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G ++EA  ++ +M  +G   D   YN L++A CR   +     L++ M + G + N  
Sbjct: 166 RRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNI 225

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           + NILI+     G I+ AL    +M+ +G+ PD  TY SL+ GLC+    Q A  +F+K 
Sbjct: 226 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 285

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLL-RGLSS 568
               +       +T +   C+ G F  A  LL RG+ S
Sbjct: 286 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDS 323



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 165/340 (48%), Gaps = 9/340 (2%)

Query: 153 GPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           GP+I   N+L+  L   GY+ +A ++ +EM  +G E + I + + I +FC+  +L +  +
Sbjct: 11  GPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 70

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           +LDE+  +  ++   +V    +I   CK ++V++A  +  ++  + CKPD   +  +   
Sbjct: 71  VLDEMSGKGLAL--NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI-- 126

Query: 271 FKLMG-SVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
           F L   + FE  + L +   L GV   T  Y   I   +    + EA +L   ++     
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 186

Query: 329 IDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
           +DD   N LI ++  + +    +  F  M+ KG  P   + + L   LC+       +E 
Sbjct: 187 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 246

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            + +       D+ +YN +++ LC +GR +EA  +  +++ +G+ PD   YN+L+   C+
Sbjct: 247 LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 306

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           E +   A  L  +   SG   N  T+ IL+S F + G+ E
Sbjct: 307 EGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 4/245 (1%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P + T + L   LCK+       E+   +       ++ +Y +++   C  GR
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  V+ EM  KGL  +   YN L+ A C+++ ++ A  ++  M + GC  ++ T+N 
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI    +V + E AL L+ +ML +GV  +  TY +L+    +   +Q A ++ N  +   
Sbjct: 125 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 184

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV---ILLKSLADAREVEMA 592
             L     +  + +LCR G+      L   + S  G + +++   IL+  L     ++ A
Sbjct: 185 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCRTGNIQHA 243

Query: 593 IEHIK 597
           +E ++
Sbjct: 244 LEFLR 248



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%)

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
           + M   G  PD+  YN+L+   C++  L  A++L ++M   GC  N+ TY ILI +F + 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G +E A  +   M  KG+A +A  Y  L+  LC++  +Q A  +F    +          
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 544 STFMISLCRRGHFLVATKLLRGL 566
           ++ +  LC+   F  A  L + +
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDM 145



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%)

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + + M + GC  ++ TYN LI    + G +  A  L + M  KG  P+  TYT L++  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           +E  L+ A  V ++     + L     +  + +LC+      A  +   +SS
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 112


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 222/521 (42%), Gaps = 83/521 (15%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPL---SYHSILKSLSLSRQINAIDSVL 107
           ++ R+ NP     H L   FF+WAS  P    SPL   +Y S+LK +   R  + I+ VL
Sbjct: 65  VIDRIHNP----QHGLY--FFHWASTLP--FSSPLNNVAYSSLLKLMVKYRLFSEIEIVL 116

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC----NSLLAV 163
           + +K             +I    +     KA  +F  V   CE      C    NSLL  
Sbjct: 117 EDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMV---CELYNCFPCVVANNSLLNC 173

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L  +G +D A +++D+M  RG +                         LD V      + 
Sbjct: 174 LVKNGKVDVACELYDKMLERGGDHG-----------------------LDLV------VD 204

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
           N S+  V+++ G C   +VEE  K++D+     C P+ + Y ++ + +   G +     V
Sbjct: 205 NYSI--VIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRV 262

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
            ++ +  G  P    Y   I G       C+A         GKF + D +LN +  +V  
Sbjct: 263 FEELKLKGFLPTLETYGALIDGF------CKA---------GKFQVVDQLLNEM--NVMG 305

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           ++    +  FN +I+                  K    D+  E+ ++++      D+ +Y
Sbjct: 306 LNVNVKV--FNSIIDAKY---------------KYGLVDKAAEMMRMMTEMGCEPDITTY 348

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N++++F C+ GR++EA   ++  K + L P+   Y  LM A C++     A  +  ++  
Sbjct: 349 NILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAE 408

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           +G   +L +Y   I      GEI+ AL +   M+EKGV PDA  Y  L+ GLC++    A
Sbjct: 409 TGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPA 468

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           A  + ++ ++ ++     + +T +    R      AT+L  
Sbjct: 469 AKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFE 509



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/495 (21%), Positives = 197/495 (39%), Gaps = 19/495 (3%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+ I+        +     V +++K+         Y  +I    +    Q    + NE+ 
Sbjct: 243 YNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMN 302

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
               ++  ++ NS++      G +D A +M   M+  G E     + + I   C   ++ 
Sbjct: 303 VMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIK 362

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +    L+  R +E +++        ++H +CK      A  +L ++     KPD ++Y  
Sbjct: 363 EAEEFLE--RAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGA 420

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
                   G +    +V +K  + GV P    Y   + GL  + R   AK L   ++   
Sbjct: 421 FIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLN 480

Query: 327 FTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
              D  +   L+ G + + +   A   F  ++ KG  P +   + + K LCK  K  + V
Sbjct: 481 LQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAV 540

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
                +   ++  D  +++ ++        L  A  +  +M ++   P+V  Y SL+   
Sbjct: 541 SYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGF 600

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+   +  A+K++  M +     N+ TY ILI  FS+ G+ E A   F  ML     P+ 
Sbjct: 601 CKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPND 660

Query: 506 TTYTSLLEGLCQETNLQAAFE------------VFNKSVNHDVMLARSILSTFMISLCRR 553
           TT+  L+ GL   TN     E             F   ++       +  ++ ++ LC+ 
Sbjct: 661 TTFHYLINGLTNITNTTLLIEKNEENDRSLILDFFATMISEGWSQVIATYNSIIVCLCKH 720

Query: 554 GHF----LVATKLLR 564
           G      L+ TK+LR
Sbjct: 721 GMVDTAQLLQTKMLR 735



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 92/485 (18%), Positives = 184/485 (37%), Gaps = 60/485 (12%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +++     + +   +D +L ++ V  + ++  V+  II +  +     KA  +   +
Sbjct: 277 TYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMM 336

Query: 146 -KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +  CE   P+I   N L+    S G I  A +  +    R +  +   +   +  +C+ 
Sbjct: 337 TEMGCE---PDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQ 393

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                   ML ++ +  +     S  A   IHG   G  ++ A  V +++  +   PD  
Sbjct: 394 GDYVMASDMLFKIAETGDKPDLVSYGA--FIHGSVAGGEIDVALMVREKMMEKGVFPDAQ 451

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y ++       G     +++L +   L + P    Y   + G I    + +A EL EV+
Sbjct: 452 IYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVV 511

Query: 323 VSGKFTIDDDVL--NALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           +S    ID  V+  N +I  +      + A+ + N M      P   T S +     K++
Sbjct: 512 MSK--GIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQH 569

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             D  ++++  +    Y  ++ +Y  +++  C    +  A  V + M+   L+P+V  Y 
Sbjct: 570 DLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYT 629

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---------------- 483
            L+    +      A   ++ M  + C  N  T++ LI+  + +                
Sbjct: 630 ILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEENDRS 689

Query: 484 -------------------------------GEIEGALRLFHNMLEKGVAPDATTYTSLL 512
                                          G ++ A  L   ML KG   D+  +++LL
Sbjct: 690 LILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALL 749

Query: 513 EGLCQ 517
            GLCQ
Sbjct: 750 HGLCQ 754



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 120/275 (43%), Gaps = 20/275 (7%)

Query: 167 DGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           DG+I     D A ++F+ +  +G++   +G+ V I   C+  K+   +S +++++   ++
Sbjct: 493 DGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHA 552

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
                     +I G+ K   ++ A K+  ++  ++ KP+ +AY  +   F  +  +   E
Sbjct: 553 --PDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAE 610

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            V +  +   + P    Y   I G     +  +A    E+++      +D   + LI  +
Sbjct: 611 KVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGL 670

Query: 342 SSI------------DPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           ++I            + RS I+ FF  MI +G    ++T +++   LCK    D    + 
Sbjct: 671 TNITNTTLLIEKNEENDRSLILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQ 730

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
             +    +  D   ++ ++  LC +G+ +E   +I
Sbjct: 731 TKMLRKGFLMDSVCFSALLHGLCQTGKSKEWRNII 765


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 198/458 (43%), Gaps = 46/458 (10%)

Query: 113 NKITLDS-----SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLA 165
           NKIT D        Y  +I       N +KA  ++ ++K N   I P +   NSLL    
Sbjct: 389 NKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLN--GIPPSVFNVNSLLRGYL 446

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
                + A K+FDE    GV  +   + + +   C+  K+ +  S+LD +  +   M+  
Sbjct: 447 KAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQ--GMVPN 503

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            V    +I G C+   ++ A  V  ++  R+ KP+ + Y I+ +     G   +   +  
Sbjct: 504 VVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFD 563

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +   L +AP    +   I GL      C+  ++ E                         
Sbjct: 564 QMLSLNIAPTDFTFNTIINGL------CKVGQMSEA------------------------ 593

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            R  +  F   +E+G +P+  T +++     K    D  + VY+ +       ++ +Y  
Sbjct: 594 -RDKLKNF---LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTS 649

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++  C S R+  A     EM+ KGL+ DV+ Y++L++  C+   +  A+ L+ ++   G
Sbjct: 650 LINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG 709

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            S N   YN +IS F ++  +E AL  +  M+   +  D  TYT+L++GL +E  L  A 
Sbjct: 710 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFAS 769

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +++ + ++  ++         +  LC +G    A K+L
Sbjct: 770 DLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKIL 807



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 196/482 (40%), Gaps = 36/482 (7%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  FN  ++   F +  ++Y  +++    S  I     +  Q+K+N I         ++
Sbjct: 384 ALNLFNKITEDGLFPNK-VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLL 442

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
              ++    ++A  +F+E   +C        N +++ L   G +D A  + D M ++G+ 
Sbjct: 443 RGYLKAPLWEEASKLFDEA-VDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMV 501

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMINGSV----------- 227
            + + +   I   C    +    S+  ++  R+        + +I+G+            
Sbjct: 502 PNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDL 561

Query: 228 --------IAVL------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
                   IA        II+G CK  ++ EA   L         P  + Y  + + F  
Sbjct: 562 FDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 621

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G++     V ++  + GV+P    Y   I G     RI  A +  + +      +D   
Sbjct: 622 EGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA 681

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            +ALI G     D  SA   F  ++E G  P     +++       N  +  +  YK + 
Sbjct: 682 YSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMI 741

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +    D+ +Y  ++  L   GRL  A  +  EM  KG+ PD+  ++ L+   C +  L 
Sbjct: 742 NDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLE 801

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+K+ ++M     + ++  YN LI+ +   G ++ A  L   ML++G+ PD  TY  L+
Sbjct: 802 NARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 861

Query: 513 EG 514
            G
Sbjct: 862 NG 863



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 129/623 (20%), Positives = 236/623 (37%), Gaps = 139/623 (22%)

Query: 5   PATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL--LT 62
           P  +   +IS       N + P  +++   + T+    +    +P     VI+  L  + 
Sbjct: 56  PKANFPEKISPESSFPGNSSSPYPRYS---QDTVPTSQIHQETTPLSQNHVIDALLCHVN 112

Query: 63  HHSLALGFFNWASQQPNFTHSPLSY----HSILKSLS--------LSRQINA-------- 102
               AL +F  A  Q  F     +Y    H +++S          L+R ++         
Sbjct: 113 DPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVV 172

Query: 103 -IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNS 159
            +D ++   K     LD  V+ +++ + I+    + A   FN +   C+D+ P +   N 
Sbjct: 173 FVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMI--CQDVIPWVPYMNI 230

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L     I     ++++M  RG                                   
Sbjct: 231 LLTALVRRNMIGELRDLYNKMVLRG----------------------------------- 255

Query: 220 NSMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              I G    V ++   C K  RVEEA +   E + R  K D  AY I+ +         
Sbjct: 256 ---IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQ--------- 303

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
               V KK       P +N      LGL     + E KE G V     FT      + ++
Sbjct: 304 ---AVCKK-------PNSN------LGL---ELLEEMKERGWVPSEATFT------SVIV 338

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
             V+  +   A+     MI  G+   L   ++L K  C +   D  + ++  ++ +  F 
Sbjct: 339 ACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFP 398

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           +  +Y+V++   C SG + +A  +  +MK  G+ P V   NSL+    +  L   A KL+
Sbjct: 399 NKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLF 458

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------------ 506
           D+    G + N+ TYNI++S   + G+++ A  L  NM+ +G+ P+              
Sbjct: 459 DEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRK 517

Query: 507 -----------------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
                                  TY+ L++G  ++ + + A ++F++ ++ ++       
Sbjct: 518 GNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTF 577

Query: 544 STFMISLCRRGHFLVATKLLRGL 566
           +T +  LC+ G    A   L+  
Sbjct: 578 NTIINGLCKVGQMSEARDKLKNF 600



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 38/299 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NS++     +G ID+AL ++ EM   GV  + + +   I  FC++ ++   L   DE+R+
Sbjct: 613 NSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMRE 672

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   +   +  A  +I GFCK + +E A  +  EL      P+ I Y  +   F+ + ++
Sbjct: 673 KGLELDVTAYSA--LIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNM 730

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
               V  KK     +      Y   I GL+ E R+  A +L                   
Sbjct: 731 EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDL------------------- 771

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                          +  M+ KG VP + T   L   LC + + +   ++ + +   +  
Sbjct: 772 ---------------YMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMT 816

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED--LLRPA 454
             +  YN +++     G L+EA+ +  EM  +GL PD   Y+ L+    + D  L RP+
Sbjct: 817 PSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPS 875



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 38/271 (14%)

Query: 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F +D  V N L+ + + +    +AI  FN MI +  +P +  ++ L   L +RN   EL 
Sbjct: 186 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 245

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++Y  +     + D  + +VMV      GR+ EA    +E K +G+  D   Y+ +++A 
Sbjct: 246 DLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 305

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+    +P   L                                L L   M E+G  P  
Sbjct: 306 CK----KPNSNL-------------------------------GLELLEEMKERGWVPSE 330

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            T+TS++     + N+  A  +  + +N    +   + ++ M   C +G+   A  L   
Sbjct: 331 ATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNK 390

Query: 566 LSSD--LGHSDSHVILLKSLADAREVEMAIE 594
           ++ D    +  ++ +L++   ++  +E A E
Sbjct: 391 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 421


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/494 (21%), Positives = 222/494 (44%), Gaps = 14/494 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A+ FF   ++   F  S +S+++I+        ++   S    +  + +  D+  Y  +I
Sbjct: 265 AVLFFQ-DTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILI 323

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD----GYIDNALKMFDEMSH 182
             L    +  +A  + N++    E+ G E       +LA      G I+ A  +  +M  
Sbjct: 324 HGLCIAGSMGEALDLKNDM----ENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLI 379

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG-FCKGKR 241
           +G   + + + V I   C + ++G V   L   ++  +     S+I+  ++ G  CK ++
Sbjct: 380 KGPNPNLVTYTVLI---CGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQ 436

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+ AFK+  E+     +PD I Y  +       G V +  ++ +K     + P +  +  
Sbjct: 437 VDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGA 496

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            ++GL  + +I +A+   + +++   ++D  + N +I G +   + R A+  +  + EKG
Sbjct: 497 ILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKG 556

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             PT+ T ++L    C   K  +   +   +  +    +  +Y  +++  C  G ++   
Sbjct: 557 ISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLL 616

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            ++ EMK K + P    Y  +++  C++  L+ + +L + M A G + +  +YN +I  F
Sbjct: 617 ELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAF 676

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            +  ++  A +L+  ML   + P + TY  L+ G C   +L+ A  +     N  V L +
Sbjct: 677 CKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNK 736

Query: 541 SILSTFMISLCRRG 554
              +T + + C +G
Sbjct: 737 YAYTTIIKAHCAKG 750



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 203/480 (42%), Gaps = 59/480 (12%)

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152
           + SR     D++   VK+  +    S+  Y  ++ +L   +++   + V+NE+K +    
Sbjct: 188 AYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNL---RHSNIMWDVYNEIKVSGTPQ 244

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
                + ++  L       +A+  F +   +  + S + F   + ++C   KLG V    
Sbjct: 245 SEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYC---KLGFV---- 297

Query: 213 DEVRKR------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
            +V K       ++ ++  +    ++IHG C    + EA  + +++     +PD + Y I
Sbjct: 298 -DVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNI 356

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +A+ F+L+G +     +++K    G  P    Y   I G      + EA +L + ++S  
Sbjct: 357 LAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHG 416

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE---KGRVPTLSTLSNLSKNLCKRNKSDE 383
           F +       L+GS+     R   V F    E    G  P L T S L   LCK+ +  +
Sbjct: 417 FQLSIISSTVLLGSLCK--SRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQ 474

Query: 384 LVEVYKVLSAN-----------------------------DYFT------DMESYNVMVS 408
            + +Y+ + +N                             DY        D+  YN+M+ 
Sbjct: 475 AILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMID 534

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                G  REA  + +++  KG+ P +  +NSLM   C    L  A++L D +   G   
Sbjct: 535 GYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEP 594

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  TY  L++ + E G ++  L L   M  K + P   TYT +++GLC++  LQ + ++ 
Sbjct: 595 NAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLL 654



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/473 (20%), Positives = 199/473 (42%), Gaps = 3/473 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ + K   L   IN   ++++++ +     +   Y  +I    Q  N ++A  ++ E
Sbjct: 352 VTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKE 411

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +  +   +       LL  L     +D A K+F EM   G+    I +   I   C+  +
Sbjct: 412 MISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGE 471

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + Q + + +++    N +I  S+I   I+ G C+  ++ +A    D L       D I Y
Sbjct: 472 VQQAILLYEKMC--SNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILY 529

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+ + +   G+  E   + K+  + G++P    +   + G  + R++ +A+ L + I  
Sbjct: 530 NIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKL 589

Query: 325 GKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                +      L+       + +S +   + M  K   PT  T + + K LCK+ K  E
Sbjct: 590 HGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQE 649

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             ++ + + A     D  SYN ++   C +  +R+A+ +  +M    L+P    YN L+ 
Sbjct: 650 SCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILIN 709

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C    L+ A  L   +     + N   Y  +I      G+++ A+  F  M+EKG   
Sbjct: 710 GFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEV 769

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
               Y++++  LC+   +  A   F   ++  V   + +    + +  + GH 
Sbjct: 770 SIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHL 822



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 123/262 (46%), Gaps = 2/262 (0%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A++FF     K   P++ + + +    CK    D     + ++  +    D  SYN++
Sbjct: 263 QDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNIL 322

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  LC +G + EA  +  +M+  GL+PD+  YN L +      L+  A  +  +M   G 
Sbjct: 323 IHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGP 382

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + NL TY +LI    ++G +E AL+L+  M+  G      + T LL  LC+   +  AF+
Sbjct: 383 NPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFK 442

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLA 584
           +F +   + +       ST +  LC++G    A  L   + S+  + +S  H  +L  L 
Sbjct: 443 LFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLC 502

Query: 585 DAREVEMAIEHIKWIQESSPTM 606
           +  ++  A  +  ++  S+ ++
Sbjct: 503 EKGKISQARMYFDYLITSNLSL 524



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/423 (18%), Positives = 180/423 (42%), Gaps = 5/423 (1%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S +S   +L SL  SRQ++    +  +++ N +  D   Y  +I  L +    Q+A 
Sbjct: 417 FQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAI 476

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            ++ ++  N       I  ++L  L   G I  A   FD +    +    I + + I  +
Sbjct: 477 LLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGY 536

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECK 258
            +     + + +  ++ ++    I+ +++    +++GFC  +++ +A ++LD +++   +
Sbjct: 537 IKRGNTREAVKLYKQLGEKG---ISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLE 593

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           P+ + Y  +   +   G++     +L + +   + P    Y   I GL  + ++ E+ +L
Sbjct: 594 PNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQL 653

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            E + +   T D    N +I +     D R A   ++ M+     PT  T + L    C 
Sbjct: 654 LEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCV 713

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
                +   +   L       +  +Y  ++   C  G + +A    ++M  KG +  +  
Sbjct: 714 YGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRD 773

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y++++   C+  L+  AK  +  M + G   +   + +L++ F + G +     L   M+
Sbjct: 774 YSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMI 833

Query: 498 EKG 500
           + G
Sbjct: 834 KSG 836


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 196/444 (44%), Gaps = 45/444 (10%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           + L    Y+ I+ + ++ +   K F V+ E++     +     N LL  LA  G +D A 
Sbjct: 124 LRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAF 183

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL--- 231
           ++F++M  +        + + I    +  +  + LS  DE+  +      G V+ ++   
Sbjct: 184 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK------GCVLNLIAFN 237

Query: 232 -IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL------ 284
            II    K K V++   VL ++   +C+P+   Y I  +     G +     VL      
Sbjct: 238 TIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRF 297

Query: 285 ----------KKKRKLGVAPRTN-------------DYREFILGLIV---ERRICEAKEL 318
                     K   K G A   +             D   F+  L V     +  EA +L
Sbjct: 298 MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDL 357

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCK 377
             ++       D  + N +  ++  +   S I   F+ M   G +P + T + +  +  +
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               D+  E+++V+ A+    D+ +YN +++ L   G L EA+ + +EM+ KG DPDV  
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFT 477

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+ L+E   + + +  A  L+D+M + GC+ N+ TYNIL+      G+ E A +L+  M 
Sbjct: 478 YSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK 537

Query: 498 EKGVAPDATTYTSL--LEGLCQET 519
           ++G+ PD+ TY+ L  LE   Q T
Sbjct: 538 QQGLIPDSITYSILERLESRSQRT 561



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 34/234 (14%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  +V     S  + + + V +EM+RKG   D+  YN L++A  +  ++  A ++++ M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  +  TY ILI    + G     L  F  M+ KG   +   + +++E L +   +
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 249

Query: 522 QAAFEVFNKSVNHDV--------------------------------MLARSILSTFMIS 549
                V +K V +D                                  + RSI S  + S
Sbjct: 250 DKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKS 309

Query: 550 LCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           LC+ GH   A  +   +  S + G  D+ V +L+ L +A +   AI+ +  + E
Sbjct: 310 LCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 363


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 158/336 (47%), Gaps = 10/336 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           ++++G C   R +EA ++L  +     +C PD ++Y  V   F        +E  L K  
Sbjct: 56  ILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF-------KEGDLDKML 108

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
              ++P    Y   I  L   + + +A E+   +V      D    N+++ G  SS  P+
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 168

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            AIVF   M   G  P + T ++L   LCK  +  E  +++  ++      D+ +Y  ++
Sbjct: 169 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
               T G L E +G++  M R G+ P+   ++ L+ A  +++ +  A  ++ +M   G +
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  +I    + G +E A+  F  M+++G+ PD+  Y SL+  LC     + A E+
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           F + ++  + L+    ++ + S C+ G  + + KL 
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLF 384



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 153/361 (42%), Gaps = 28/361 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRG-------VEFSTIGFGVFIWKFCENAKLGQVLS 210
           N LL  L  +     AL++   M+  G       V +ST+  G F        K G +  
Sbjct: 55  NILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF--------KEGDLDK 106

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           MLD+ R   N +   S+IA L     CK + V++A +VL  +      PD + Y  +   
Sbjct: 107 MLDQ-RISPNVVTYNSIIAAL-----CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           F   G   E  V LKK R  GV P    Y   +  L    R  EA+++ + +       D
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 DDVLNALIGSVSSIDPRSAIV----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                 L+   ++   + A+V      + M+  G  P     S L     K+ K +E + 
Sbjct: 221 ITTYGTLLQGYAT---KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V+  +       +  +Y  ++  LC SGR+ +A    ++M  +GL PD   YNSL+ + C
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             D    A++L+ +M   G   +   +N +I    + G +  + +LF  M+  GV PD  
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDII 397

Query: 507 T 507
           T
Sbjct: 398 T 398



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS--ANDYFTDMESYNVMVSFL 410
           F+ ++ +G +P + + + L   LC  N+S E +E+  +++    D   D+ SY+ +++  
Sbjct: 40  FDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN-- 96

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G  +E  G + +M  + + P+V  YNS++ A C+   +  A ++   M  SG   + 
Sbjct: 97  ---GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC 151

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  F   G+ + A+     M   GV PD  TY SL++ LC+      A ++F+ 
Sbjct: 152 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 211

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADARE 588
                +    +   T +     +G  +    LL  +  +  H + +V  IL+ + A   +
Sbjct: 212 MTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 271

Query: 589 VEMAI 593
           VE A+
Sbjct: 272 VEEAM 276



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/432 (19%), Positives = 178/432 (41%), Gaps = 39/432 (9%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y  ++  L     +Q+A  + + +  +  D  P++ +  +++     +G +D   KM D+
Sbjct: 54  YNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD---KMLDQ 110

Query: 180 -MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
            +S   V +++I     I   C+   + + + +L  + K  + ++   +    I+HGFC 
Sbjct: 111 RISPNVVTYNSI-----IAALCKAQTVDKAMEVLTTMVK--SGVMPDCMTYNSIVHGFCS 163

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
             + +EA   L ++R    +PD + Y  + +     G   E   +     K G+ P    
Sbjct: 164 SGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT 223

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMI 357
           Y   + G   +  + E   L +++V      +  V + L+ + +  +    A++ F+ M 
Sbjct: 224 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMR 283

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
           ++G  P   T   +   LCK  + ++ +  ++ +       D   YN ++  LC   +  
Sbjct: 284 QQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 343

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF--------------- 462
           +A  +  EM  +G+     F+NS++++ C+E  +  + KL+D M                
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRND 403

Query: 463 ----------ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
                     ++G   N  TY ++       G +E   +LF +M + G   D+     ++
Sbjct: 404 EAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 463

Query: 513 EGLCQETNLQAA 524
             L Q   +  A
Sbjct: 464 RELLQRGEITRA 475



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 163/390 (41%), Gaps = 23/390 (5%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH--SP--LSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           P ++++ ++  GFF             SP  ++Y+SI+ +L  ++ ++    VL  +  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
            +  D   Y  I+         ++A       K   + + P++   NSL+  L  +G   
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLK--KMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            A K+FD M+ RG++     +G  +  +     L ++  +LD +  R     N  V ++L
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSIL 262

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +   + K ++VEEA  V  ++R +   P+ + Y  V +     G V +  +  ++    G
Sbjct: 263 VC-AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR--SA 349
           + P +  Y   I  L +  +  +A+EL   ++     +     N++I S    + R   +
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK-EGRVIES 380

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
              F+ M+  G  P + TL           ++DE  +++   S+N    +  +Y +M   
Sbjct: 381 GKLFDLMVRIGVKPDIITLG----------RNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 430

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           +   G L E   +   M+  G   D    N
Sbjct: 431 IIGQGLLEELDQLFLSMEDNGCTVDSGMLN 460



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 164/399 (41%), Gaps = 43/399 (10%)

Query: 152 IGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           I P +   NS++A L     +D A+++   M   GV    + +   +  FC + +  + +
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
             L ++R   + +    V    ++   CK  R  EA K+ D +  R  KPD   Y  + +
Sbjct: 172 VFLKKMRS--DGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            +   G++ E   +L    + G+ P    +   +     + ++ EA     ++V  K   
Sbjct: 230 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA-----MLVFSKMRQ 284

Query: 330 DDDVLNALI-GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                NA+  G+V  +  +S     A+++F  MI++G  P     ++L  +LC  +K ++
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEK 344

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--------- 434
             E++  +           +N ++   C  GR+ E+  +   M R G+ PD         
Sbjct: 345 AEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDE 404

Query: 435 -----VSF-----------YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
                V+F           Y  + E    + LL    +L+  M  +GC+ +    N ++ 
Sbjct: 405 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 464

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATT---YTSLLEG 514
           +  + GEI  A      + EK  + +A+T   +  LL G
Sbjct: 465 ELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSG 503


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 182/408 (44%), Gaps = 20/408 (4%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++ +L Q     +A SVF  ++   E      CN++L  L     +    ++FDEM  RG
Sbjct: 112 LVIALSQMALPDEALSVFGRLR---ELPALPACNAILDGLVKAHMLARVWELFDEMLGRG 168

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVE 243
           +  S + +   I        + +   + D++  R    I+ +V+    +I+  C+   + 
Sbjct: 169 MVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR---IDPNVVTYTTMIYALCEEDCIG 225

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE------VVLKKKRKLGVAPRTN 297
           +A  +  E++    +P+   Y        LM S F+R+      V      K G+ P   
Sbjct: 226 DAEGLFLEMKEAGMRPNLYTYN------ALMSSHFKRDNIKHALVFYYDLLKCGLVPNDV 279

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
            +   I GL    RI EAK +   +   +      V N+LI G+  S   + A+ FF  +
Sbjct: 280 IFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEI 339

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           I K   P   T S + + LC   +        +V+  +    +  +YNV++   C SG L
Sbjct: 340 IRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNL 399

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            EA      M   G++P+V  Y+SL++   +   +  A  ++ +M A G   N+ TY  L
Sbjct: 400 DEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTAL 459

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           I   ++ G+++ A  L   M EKG+  +A T + L++GLC+E  +Q A
Sbjct: 460 IHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 133/306 (43%), Gaps = 1/306 (0%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           I+ G  K   +   +++ DE+  R   P  + Y  +    +  G V +   V  +     
Sbjct: 144 ILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR 203

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAI 350
           + P    Y   I  L  E  I +A+ L   +       +    NAL+ S    D  + A+
Sbjct: 204 IDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHAL 263

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           VF+  +++ G VP     + L   LCK N+  E   ++  +   +    +  YN ++   
Sbjct: 264 VFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SG  +EA    QE+ RK L PD    + ++   C    ++ A +  + M  SG + N 
Sbjct: 324 FRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNA 383

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN+LI ++ + G ++ AL     M E GV P+  TY+SL++G  +   ++ A  ++ +
Sbjct: 384 AAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTE 443

Query: 531 SVNHDV 536
            V   V
Sbjct: 444 MVAKGV 449



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 125/260 (48%), Gaps = 5/260 (1%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P  A+  F  + E   +P L   + +   L K +    + E++  +        + +YN 
Sbjct: 122 PDEALSVFGRLRE---LPALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNT 178

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++     G + +A+ V  +M  + +DP+V  Y +++ A C ED +  A+ L+ +M  +G
Sbjct: 179 LINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAG 238

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              NL TYN L+S   +   I+ AL  ++++L+ G+ P+   +T+L++GLC+   +  A 
Sbjct: 239 MRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAK 298

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSL 583
            +F     ++V     + ++ +    R G+   A    + +       D     I+++ L
Sbjct: 299 NIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGL 358

Query: 584 ADAREVEMAIEHIKWIQESS 603
            D  ++++A   ++ +Q+S 
Sbjct: 359 CDGGQMQVATRFLEVMQQSG 378



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/445 (20%), Positives = 178/445 (40%), Gaps = 66/445 (14%)

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSH 182
           I+  L++     + + +F+E+      + P +   N+L+      G +  A +++D+M  
Sbjct: 144 ILDGLVKAHMLARVWELFDEML--GRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVA 201

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR-------------------KREN--- 220
           R ++ + + +   I+  CE   +G    +  E++                   KR+N   
Sbjct: 202 RRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKH 261

Query: 221 -----------SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVA 268
                       ++   VI   +I G CK  R+ EA  +  ++   E  P    Y  ++ 
Sbjct: 262 ALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIH 321

Query: 269 EEFKLMGS----VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG----- 319
             F+   +     F +E++ K+ R            EF   ++V R +C+  ++      
Sbjct: 322 GAFRSGYAQEALAFFQEIIRKELRP----------DEFTCSIVV-RGLCDGGQMQVATRF 370

Query: 320 -EVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            EV+      ++    N LI     S +   A+V    M E G  P + T S+L     K
Sbjct: 371 LEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSK 430

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + +  + +Y  + A     ++ +Y  ++     +G +  A+ + +EM+ KG+  +   
Sbjct: 431 NGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAIT 490

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCS------GNLKTYNILISKFSEVGEIEGALR 491
            + L++  CRE+ ++ A +   +      S       N  TY  LI      G+   A  
Sbjct: 491 VSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACH 550

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLC 516
            F  M + G+ PD  TYT ++ GLC
Sbjct: 551 FFSCMRDSGMVPDRFTYTLVIRGLC 575



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG--K 133
           QQ     +  +Y+ ++     S  ++  ++++   +++++ ++ +V  +   SLI G  K
Sbjct: 375 QQSGIALNAAAYNVLIDEYCKSGNLD--EALVTCTRMSEVGVEPNVVTY--SSLIDGHSK 430

Query: 134 NTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           N +   ++    +   + + P +    +L+   A +G +D A  +  EM  +G+  + I 
Sbjct: 431 NGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAIT 490

Query: 192 FGVFIWKFCENAKLGQVLSMLDEV----RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
             V +   C   ++   +  + E     +  +N  I  SV  + +I+G     +  EA  
Sbjct: 491 VSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACH 550

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
               +R     PD   Y +V     ++G V    ++     K+GV P
Sbjct: 551 FFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 189/426 (44%), Gaps = 53/426 (12%)

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
            +K F    E+ F+   I   + N+L+        ID A  +++EM  +G+    I F +
Sbjct: 355 ARKLFDGLKEMGFSPNAI---MYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNI 411

Query: 195 FI---WKFC---ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
            +   +K+    +  +L + +S+L  +  R  S+ + SV       G C   R++EA + 
Sbjct: 412 LVSGHYKYGREEDGDRLLKDISVLGLLPDR--SLFDISV------SGLCWAGRLDEAMEF 463

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           L ++  +   P  IA+  V   +   G   +     K     G+ P  +     ++GL +
Sbjct: 464 LMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSI 523

Query: 309 ERRICEAKEL-GEVIVSG-------------KFTIDDDVLNA---------------LIG 339
             R+ EA EL G++I  G             KF    DV+ A               ++ 
Sbjct: 524 NGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVA 583

Query: 340 SVSSIDPRS-------AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             + ID  S       A   F  M+ KG +P     ++L    CK  K +E +++ KV+ 
Sbjct: 584 FSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMR 643

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ + N+++  LC  GR+R A  V  +M + GL PD+  YN+L+   C+   + 
Sbjct: 644 HRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMV 703

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  L ++M+ASG + +L TYNI I  F     +  A+ +   ++  G+ P+  TY S+L
Sbjct: 704 NADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSML 763

Query: 513 EGLCQE 518
            G+C +
Sbjct: 764 NGVCSD 769



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 176/439 (40%), Gaps = 43/439 (9%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           AL++   M   GV  S  G  +           G V  +  +V +R       +   +++
Sbjct: 215 ALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIIL 274

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
             GFC+   +     +L  +    C+P+  AY IV     + G   +         + G 
Sbjct: 275 --GFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGC 332

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIV 351
            P    +   I     E  + EA++L + +    F+ +  + N L+ G V   +   A +
Sbjct: 333 NPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANM 392

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            +  M +KG  P   T + L     K  + ++   + K +S      D   +++ VS LC
Sbjct: 393 LYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 452

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL--------------------- 450
            +GRL EA   + +M  KGL P +  +NS++ A  +  L                     
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 512

Query: 451 --------------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
                         L+ A +L  QM   G S N   + +L+ KF + G++ GA  L+  M
Sbjct: 513 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEM 572

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
             +G+ PD   +++ ++GL ++  ++ A+ VF + +   ++      ++ +   C+ G  
Sbjct: 573 ERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKL 632

Query: 557 LVATKL-----LRGLSSDL 570
             A KL      RGL  D+
Sbjct: 633 NEALKLEKVMRHRGLLPDI 651



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 172/411 (41%), Gaps = 14/411 (3%)

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           D +LK + V  +  D S++   +  L       +A     ++    + + P I   NS++
Sbjct: 426 DRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLE--KGLSPSIIAFNSVI 483

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           A  +  G  D A + +  M H G+  S       +     N +L +   ++ ++ ++  S
Sbjct: 484 AAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLS 543

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
            +N     VL+   F +G  V  A  +  E+  R   PD +A+    +     G V E  
Sbjct: 544 -VNNMAFTVLLDKFFKRGD-VVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAY 601

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            V  +  + G+ P    Y   I G     ++ EA +L +V+       D    N +IG +
Sbjct: 602 NVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGL 661

Query: 342 SSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK---RNKSDELVEVYKVLSANDYF 397
                 RSAI  F  M + G  P + T + L    CK      +D LV       +N   
Sbjct: 662 CKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSN--- 718

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D+ +YN+ +   C+S R+  A  ++ E+   G+ P+   YNS++   C  D+L  A  L
Sbjct: 719 PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC-SDILDRAMIL 777

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             ++       N+ T N+L+S+F + G  E  L   H + E   A D  TY
Sbjct: 778 TARLLKMAFVPNVVTANLLLSQFYKQGMPERTLMWGHKLSEIPYAFDEITY 828



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 160/385 (41%), Gaps = 14/385 (3%)

Query: 30  WTPLLEQTLHQLG--LRDSLSPSLVA--RVINPYLLTHHSLALGFFNWASQQPNF--THS 83
           W   L++ +  L   L   LSPS++A   VI  Y  +   L    F       +F  T S
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAY--SQAGLEDKAFEAYKLMVHFGLTPS 510

Query: 84  PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           P +  S+L  LS++ ++     ++ Q+    +++++  +  ++    +  +   A S++ 
Sbjct: 511 PSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWG 570

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           E++     I P++   ++ +  L+  G ++ A  +F EM  +G+  +   +   I  FC+
Sbjct: 571 EMER--RGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCK 628

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             KL + L +   +R R   ++       +II G CK  R+  A  V  ++      PD 
Sbjct: 629 CGKLNEALKLEKVMRHR--GLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDI 686

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y  +   +     +   + ++ +    G  P    Y   I G    RR+  A  + + 
Sbjct: 687 ITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDE 746

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +VS     +    N+++  V S     A++    +++   VP + T + L     K+   
Sbjct: 747 LVSAGIVPNTVTYNSMLNGVCSDILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMP 806

Query: 382 DELVEVYKVLSANDYFTDMESYNVM 406
           +  +     LS   Y  D  +Y +M
Sbjct: 807 ERTLMWGHKLSEIPYAFDEITYKIM 831


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 199/472 (42%), Gaps = 44/472 (9%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY---- 122
           AL  FN  S+Q  F H+  +Y +IL  L+     +A+D VL Q+          ++    
Sbjct: 109 ALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFVNLM 168

Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
           +    S +  K     FS+   V+   E   P+  ++ L +L     +D A K+      
Sbjct: 169 KHFSKSSLHEKLLHAYFSIQPIVR---EKPSPKALSTCLNLLLDSNRVDLARKLLLHAKR 225

Query: 183 RGVEFSTIG-FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
                  +  F + +   C+N  L     +++E+R  E S  N    + L+  G C+  R
Sbjct: 226 DLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLM-DGLCRNGR 284

Query: 242 VEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           V+EAF + +E+  R+   PD + Y ++   F   G       V++  +  G  P   +Y 
Sbjct: 285 VKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYS 344

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             + GL      C+          GK      VL  + GS                   G
Sbjct: 345 ALVDGL------CKV---------GKLEDAKGVLAEIKGS-------------------G 370

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P   T ++L   LC+  KSDE +E+ + +  N    D  ++NV++  LC  G+  EA 
Sbjct: 371 LKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEAL 430

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +++++ ++G+  +   Y  ++ +  ++  L+ AK+L   M   G   +  T N L+   
Sbjct: 431 DMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCL 490

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            + G ++ A     +++E G  P   T+  L+  +C+E  L   FE+ ++ V
Sbjct: 491 CKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDELV 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 4/238 (1%)

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSGRLREA 419
           R P +   + L K  CK    D   E+ + +  +++ + ++ +Y+ ++  LC +GR++EA
Sbjct: 229 RKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEA 288

Query: 420 YGVIQEM-KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           + + +EM  R  + PD   YN L+   CR      A+ +   M ++GC  N+  Y+ L+ 
Sbjct: 289 FDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVD 348

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
              +VG++E A  +   +   G+ PDA TYTSL+  LC+      A E+  +   +    
Sbjct: 349 GLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQA 408

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
                +  +  LCR G F  A  ++  L       +  S+ I+L SL    E++ A E
Sbjct: 409 DSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKE 466



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 6/224 (2%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYG 421
           P L T S L   LC+  +  E  ++++ + + D+   D  +YNV+++  C  G+   A  
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           VIQ MK  G  P+V  Y++L++  C+   L  AK +  ++  SG   +  TY  LI+   
Sbjct: 327 VIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLC 386

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G+ + A+ L   M E G   D+ T+  LL GLC+E   + A ++  K     V L + 
Sbjct: 387 RNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKG 446

Query: 542 ILSTFMISLC-----RRGHFLVATKLLRGLSSDLGHSDSHVILL 580
                + SL      +R   L+   L RG       S+  ++ L
Sbjct: 447 SYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCL 490



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 347 RSAIVFFNFMIEKGR-VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           + A   F  M+ +   VP   T + L    C+  K D    V + + +N  + ++ +Y+ 
Sbjct: 286 KEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSA 345

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +V  LC  G+L +A GV+ E+K  GL PD   Y SL+   CR      A +L ++M  +G
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG 405

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C  +  T+N+L+      G+ E AL +   + ++GV  +  +Y  +L  L Q+  L+ A 
Sbjct: 406 CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAK 465

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           E+    +        +  +  ++ LC+ G
Sbjct: 466 ELLGLMLRRGFQPHYATSNELLVCLCKAG 494


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 117/550 (21%), Positives = 236/550 (42%), Gaps = 57/550 (10%)

Query: 5   PATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHH 64
           P  DL  ++++ + S+S+   P     P L + L  L L  +++PS  + ++    L H 
Sbjct: 83  PRRDLICKVTKILHSSSD---PF----PDLSEYLQTLNL--TITPSEASEILK--CLNHP 131

Query: 65  SLALGFFNWASQQ-PNFTHSPLSYHSIL------KSLSLSRQINAIDSVLKQ-------- 109
            L+L FF + S   P F H+  +Y+ +L       +L  S +++ I ++L          
Sbjct: 132 HLSLEFFRFCSSNIPKFQHNSFTYNRLLVILSKPSALRDSERLDLIRAILDDMERCGVRG 191

Query: 110 ------------------------VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
                                   VK   + ++   Y+ ++ + ++  N+ KAF V+ E+
Sbjct: 192 SISTINILIGIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVEL 251

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +     +     N LL  LA D  +D    +F +M  +  E     + + I    +  K 
Sbjct: 252 RRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKA 311

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA-- 263
            + L++  E+   E       +    +I      + V++   +  ++ + E    F+   
Sbjct: 312 DESLTLFQEMT--EKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVV-EVSNKFMNKS 368

Query: 264 -YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +      +G   E   +             + Y   +  L    +  EA +L   I
Sbjct: 369 IYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKI 428

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
              + + D  + N ++ ++  +   S +   +  M + G  P + + + L  +  +  + 
Sbjct: 429 HEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRV 488

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +E V++++ L  +    D+ S+N +++ L  +G + EA+   +EM+ +GL PDV  Y++L
Sbjct: 489 EEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTL 548

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +E   + D +  A +L+D+M A GCS N+ TYNIL+      G    A+ L+  + ++G+
Sbjct: 549 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 608

Query: 502 APDATTYTSL 511
            PD+ TY  L
Sbjct: 609 TPDSITYAVL 618



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  ++     S    +A+ V  E++R+G   D+  YN L++A  +++ +     ++  M
Sbjct: 227 TYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDM 286

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  +  TY I+I    ++G+ + +L LF  M EKG  P+   Y ++++ L     +
Sbjct: 287 KRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMV 346

Query: 522 QAAFEVFNKSVNH--DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS--DLGHSDSHV 577
                +F+K V    +  + +SI +  + +L + GH   A +L   + S  D G  D+++
Sbjct: 347 DKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYM 406

Query: 578 ILLKSLADAREVEMAIEHIKWIQE---SSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634
            +L+SL DA +   A++ +  I E   S+ T++          L  +S        LH L
Sbjct: 407 SMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSD-------LHDL 459

Query: 635 QEK 637
            EK
Sbjct: 460 YEK 462



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 165/436 (37%), Gaps = 86/436 (19%)

Query: 158 NSLLAVLASDGYIDNALKM------FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           N LL +L+    + ++ ++       D+M   GV  S     + I  F   A + +    
Sbjct: 156 NRLLVILSKPSALRDSERLDLIRAILDDMERCGVRGSISTINILIGIFGGGADVERCF-- 213

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
            D V+K +  M   +   +L  H   +     +AF+V  ELR R  K D  AY ++ +  
Sbjct: 214 -DLVKKWDLQMNCYTYKCLLQAH--LRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDAL 270

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
                V +  +V K                      ++R+ CE  E    I         
Sbjct: 271 AKDNKVDQVYMVFKD---------------------MKRKHCEPDEYTYTI--------- 300

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK-- 389
             +  + G +   D   ++  F  M EKG  P L   + + + L      D+ + ++   
Sbjct: 301 --MIRMTGKIGKAD--ESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 356

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE- 448
           V+  ++ F +   Y  +V  L   G   EA+ +   M     + D   Y S++E+ C   
Sbjct: 357 VVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAG 416

Query: 449 ------DLLRPAKK----------------------------LWDQMFASGCSGNLKTYN 474
                 DLL    +                            L+++M   G S ++ +YN
Sbjct: 417 KTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYN 476

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNK 530
           ILIS F   G +E A+++F  +      PD  ++ SL+  L +  ++  A     E+  +
Sbjct: 477 ILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREE 536

Query: 531 SVNHDVMLARSILSTF 546
            ++ DV+   +++  F
Sbjct: 537 GLSPDVVTYSTLIECF 552


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 156/653 (23%), Positives = 283/653 (43%), Gaps = 51/653 (7%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           +++   ++A +IS+ ++S+  ++    + TP          L  SL+   V  +++ ++L
Sbjct: 23  SLKLNQEIAGKISKTLVSSGAKSL---QTTP---------SLLSSLNSQTVHLILSNHIL 70

Query: 62  THHSLALGFFNWASQQPNFTHSPL-SYHSILKSLSLSRQINAIDSVLKQVKV----NKIT 116
           T  S  L FF++   + N+    L +Y +++  L  SR+ + +    K  ++    N   
Sbjct: 71  TAES-CLDFFHFI--RKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAA 127

Query: 117 LDSS--VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           +D    V   +I SL+            NE K N      +  + L  V A +     AL
Sbjct: 128 VDDGLRVPVTVIASLVD--------DACNESKCNRAKFKEKFFDLLFRVYADNKMFGEAL 179

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII- 233
           + F+ M  +G         V++       + GQV S L   R+  N  +  +V ++ I+ 
Sbjct: 180 EAFEHMEKKGFHIDERSCLVYLLAL---RRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 236

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF--KL-MGSVFEREVVLKKKRKL 290
            G CK   VE   K++DE+  +  K + + Y    E +  +L +G V E   +L    K 
Sbjct: 237 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE---ILTLMEKE 293

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSA 349
           GVA     Y   I G     +I EA+ L E +       D  V  ++I  +  S + + A
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +V F+ M +KG +P+  T   L   +CK  + +    +   +       +   +N ++  
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C SG + EA  +   M++KGL+ DV  YNS+    C+ +    AK L   M   G S N
Sbjct: 414 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 473

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             ++  LI  + + G    A R+F  M EKG  P+  TY  L++G  +  N++ A ++ +
Sbjct: 474 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKD 533

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
           +  N  ++      ++ +   C  G   +A KL      RGL  ++    ++  ++  L+
Sbjct: 534 ELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV---TYTAMISGLS 590

Query: 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
                E A +    ++E+  T    + + L  SL S+   E I + +   Q K
Sbjct: 591 KDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAD--ESISMQIQGSQVK 641



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 431 LDPDVSFYN--SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           LD +V+ Y+   +++  C+   +   +KL D++ A G   N+ TYN  I  + +  ++ G
Sbjct: 223 LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGG 282

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILS 544
              +   M ++GVA +  TYT L+ G      ++ A  +F     K +  DV +  SI+S
Sbjct: 283 VAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 342

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602
                 CR G+   A  L   ++    +  + ++  L+  +  A ++E A   +  +Q  
Sbjct: 343 CN----CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 398

Query: 603 SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGA 645
              +   I   L      S   +  L L   +++K L+S++ A
Sbjct: 399 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFA 441


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 210/506 (41%), Gaps = 80/506 (15%)

Query: 63  HHSLALGFFNWASQ--QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
           HH+ A  F N  ++  +PN       + S++ + +++R +    S  +++K   I L   
Sbjct: 294 HHARAT-FENMRARGIEPN----AFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIV 348

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  +I    +  +TQ A ++F E K N  D+   I ++++      G +D A ++  EM
Sbjct: 349 TYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEM 408

Query: 181 SHRGVEF-----------------------------------STIGFGVFIWKFCENAKL 205
              G++                                    S I +G  I  + +  K+
Sbjct: 409 EEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKV 468

Query: 206 GQVLSMLDEVRKRENSMI-NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            + +++  E+   E+S I + +    ++I GF        AF++ +E+     +PD   Y
Sbjct: 469 AKAIAISKEM---ESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIY 525

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ E F  MG++     +L+K +K  + P    +R  I G  V                
Sbjct: 526 NLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV---------------- 569

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                             + D + A+   + M   G  PT+ T + L   L ++N+ +  
Sbjct: 570 ------------------AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERA 611

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V V   +S      +  +Y +++     +G + +A+    ++K  GL  DV  Y +L+ A
Sbjct: 612 VSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRA 671

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC+   ++ A  +  +M +   + N   YNILI  ++  G++  A  L   M E GV P+
Sbjct: 672 CCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPN 731

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNK 530
             TYTS +   C+  ++Q A  V ++
Sbjct: 732 IHTYTSYINACCKAGDMQRAQTVIDE 757



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 173/415 (41%), Gaps = 3/415 (0%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    +  AL   +EM   G+E + + + + I  F +        ++  E 
Sbjct: 314 VFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEA 373

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +     + NG +I   IIH  C+   ++ A +++ E+          AY  +   + ++ 
Sbjct: 374 KTNLGDL-NG-IIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQ 431

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
              +  +V ++ ++    P    Y   I   +   ++ +A  + + + S     ++   +
Sbjct: 432 DEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYS 491

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G +   D  +A   F  M++ G  P  +  + L +  CK    D  + + + +   
Sbjct: 492 MLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE 551

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                  ++  ++     +G ++ A  ++  M+R G  P V  YN+L+    R++ +  A
Sbjct: 552 RMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERA 611

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + ++M  +G + N  TY I++  ++  G+I  A   F  + E G+  D   Y +LL  
Sbjct: 612 VSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRA 671

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            C+   +Q+A  V  +  +  +     + +  +    RRG    A  L++ +  D
Sbjct: 672 CCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED 726



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           + +M+ +    G    A    + M+ +G++P+   + SL+ A      +R A    ++M 
Sbjct: 280 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMK 339

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A G    + TY+ILIS F ++ + + A  LF          +   Y++++   CQ  N+ 
Sbjct: 340 AEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMD 399

Query: 523 AAFEVFNK 530
            A E+ ++
Sbjct: 400 RAEELVHE 407



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 115/270 (42%), Gaps = 19/270 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y++++  L    Q+    SVL ++ +  IT +   Y  I+       +  KAF  F +
Sbjct: 593 MTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTK 652

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI--WKFCEN 202
           +K     +   I  +LL      G + +AL +  EMS + +  +T  + + I  W     
Sbjct: 653 IKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGW----- 707

Query: 203 AKLGQVLSMLDEVRK-RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           A+ G V    D +++ +E+ +          I+  CK   ++ A  V+DE+     KP+ 
Sbjct: 708 ARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNL 767

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYREFILGLIVERRICEAKELGE 320
             Y  + + +    S+ +R +   ++ KL G+ P    Y   +  L+    + E      
Sbjct: 768 KTYTTLIKGWA-RASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTG 826

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           ++   +   ++D+         ++D R+A+
Sbjct: 827 ILSVCREMFENDL---------TVDMRTAV 847


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 196/444 (44%), Gaps = 45/444 (10%)

Query: 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           + L    Y+ I+ + ++ +   K F V+ E++     +     N LL  LA  G +D A 
Sbjct: 124 LRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAF 183

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL--- 231
           ++F++M  +        + + I    +  +  + LS  DE+  +      G V+ ++   
Sbjct: 184 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK------GCVLNLIAFN 237

Query: 232 -IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL------ 284
            II    K K V++   VL ++   +C+P+   Y I  +     G +     VL      
Sbjct: 238 TIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRF 297

Query: 285 ----------KKKRKLGVAPRTN-------------DYREFILGLIV---ERRICEAKEL 318
                     K   K G A   +             D   F+  L V     +  EA +L
Sbjct: 298 MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDL 357

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCK 377
             ++       D  + N +  ++  +   S I   F+ M   G +P + T + +  +  +
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
               D+  E+++V+ A+    D+ +YN +++ L   G L EA+ + +EM+ KG DPDV  
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFT 477

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+ L+E   + + +  A  L+D+M + GC+ N+ TYNIL+      G+ E A +L+  M 
Sbjct: 478 YSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK 537

Query: 498 EKGVAPDATTYTSL--LEGLCQET 519
           ++G+ PD+ TY+ L  LE   Q T
Sbjct: 538 QQGLIPDSITYSILERLESRSQRT 561



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 34/234 (14%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y  +V     S  + + + V +EM+RKG   D+  YN L++A  +  ++  A ++++ M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  +  TY ILI    + G     L  F  M+ KG   +   + +++E L +   +
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 249

Query: 522 QAAFEVFNKSVNHDV--------------------------------MLARSILSTFMIS 549
                V +K V +D                                  + RSI S  + S
Sbjct: 250 DKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKS 309

Query: 550 LCRRGHFLVATKLLRGL--SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           LC+ GH   A  +   +  S + G  D+ V +L+ L +A +   AI+ +  + E
Sbjct: 310 LCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 363


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 130/599 (21%), Positives = 254/599 (42%), Gaps = 67/599 (11%)

Query: 47  LSPSLVARVI----NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
           +SP+LV +++    NP      + AL  F+ A Q P + H P  +H IL+ L   + +  
Sbjct: 8   ISPTLVLKLLKAEKNP------NAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVH 61

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK--FNCEDIGPEICNSL 160
           +  ++  ++  + T    V    I +  +     +A ++F  +   F C + G    NS+
Sbjct: 62  VGRIVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGC-NPGIRSFNSM 120

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           L           A   F      G+  +   + + I   C+  +  +   +L  +   EN
Sbjct: 121 LNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMF--EN 178

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            +    +    +I+   K   + +A ++ DE+ +R   PD + Y I+ + F   G   + 
Sbjct: 179 GLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKA 238

Query: 281 EVVLKKK-RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
             + K+   +  V P    Y   I GL    ++ E+ E+   +   + + D    +++I 
Sbjct: 239 NEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIH 298

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND--- 395
            +S   +  +A   F  MIE G  P + T + +   L +  K ++  E++ V+S N+   
Sbjct: 299 GLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCN 358

Query: 396 ----------------------YF---------TDMESYNVMVSFLCTSGRLREAYGVIQ 424
                                 Y+          D  +Y ++++ LC +G L +A  +++
Sbjct: 359 IVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILE 418

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           E + +G D D   Y+S++   C++ +L  A +L  QM  +    N   +N LI+ +    
Sbjct: 419 EAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAF 478

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHDVMLAR 540
           ++E A+ +   M  K  AP   +Y +++ GLC+      A+    E+  + +  D M+  
Sbjct: 479 KLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPD-MITY 537

Query: 541 SILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
           S+L   +  LCR     +A  L      + L  DL     H I++  L  A++V++A+E
Sbjct: 538 SLL---IDGLCRGEKVDMALNLWHQCINKRLKPDL---QMHNIIIHGLCTAQKVDVALE 590



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 199/453 (43%), Gaps = 44/453 (9%)

Query: 73  WASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           W   + N   SP   ++ S++  LS +   NA + V +++  + ++ D   Y  ++  L 
Sbjct: 278 WNRMKKN-EKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLF 336

Query: 131 QGKNTQKAFSVFNEV-KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           +     K F ++N + K NC +I     N L+  L  +  ++ A+  +  +  RG++  +
Sbjct: 337 RTGKLNKCFELWNVMSKNNCCNIVSY--NMLIQGLLDNKKVEQAICYWQLLHERGLKADS 394

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKV 248
             +G+ I   C+N  L + L +L+E    EN   +    A   ++HG CK   +E+A ++
Sbjct: 395 TTYGLLINGLCKNGYLNKALRILEEA---ENEGADLDTFAYSSMVHGLCKKGMLEQAVEL 451

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
           + +++    K +   +  +   +     + E   VL++ +    AP    Y   I GL  
Sbjct: 452 IHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGL-- 509

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
               C+A+   +  +S K                             M+E+G  P + T 
Sbjct: 510 ----CKAERFSDAYLSLKE----------------------------MLEEGLKPDMITY 537

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           S L   LC+  K D  + ++          D++ +N+++  LCT+ ++  A  +  +M++
Sbjct: 538 SLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQ 597

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
               PD+  +N++ME   +      A K+WD++  +G   ++ +YNI          +  
Sbjct: 598 VNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSD 657

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
           A+   ++ L++G+ P+A T+  L+  +  +  L
Sbjct: 658 AIEFLYDALDRGILPNAPTWNVLVRAVVDDKPL 690



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 189/449 (42%), Gaps = 17/449 (3%)

Query: 103 IDSVLKQ---VKVNKI----TLDSSVY------RFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           ID  L++   VK N+I      +SSVY        +I  L +     ++  ++N +K N 
Sbjct: 226 IDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNE 285

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
           +       +S++  L+  G  + A K+F EM   G+      +   +       KL +  
Sbjct: 286 KSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCF 345

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
            + + + K     I   V   ++I G    K+VE+A      L  R  K D   Y ++  
Sbjct: 346 ELWNVMSKNNCCNI---VSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLIN 402

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
                G + +   +L++    G    T  Y   + GL  +  + +A EL   +   +  +
Sbjct: 403 GLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKL 462

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           +  V N+LI G V +     AI     M  K   PT+ + + +   LCK  +  +     
Sbjct: 463 NSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSL 522

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           K +       DM +Y++++  LC   ++  A  +  +   K L PD+  +N ++   C  
Sbjct: 523 KEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTA 582

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A +++ QM    C  +L T+N ++    + G+   AL+++  +LE G+ PD  +Y
Sbjct: 583 QKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISY 642

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
               +GLC    +  A E    +++  ++
Sbjct: 643 NITFKGLCSCARVSDAIEFLYDALDRGIL 671



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 207/507 (40%), Gaps = 54/507 (10%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           L   +F  A   PN      +Y+ ++K     RQ      +L  +  N +  D   Y  +
Sbjct: 135 LFFTYFQTAGMSPNLQ----TYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTL 190

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI-C-NSLLAVLASDGYIDNALKMFDEM-SH 182
           I +L +  N   A  +F+E+      + P++ C N L+      G    A +++  + + 
Sbjct: 191 INALAKSGNLLDAVELFDEMSV--RGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTE 248

Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
             V  S   + + I   C+  KL + + M + ++K E S    +  +  +IHG  K    
Sbjct: 249 SSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSS--MIHGLSKAGNF 306

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV---FEREVVLKKKRKLGVAPRTNDY 299
             A KV  E+      PD   Y  +       G +   FE   V+ K     +      Y
Sbjct: 307 NAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIV----SY 362

Query: 300 REFILGLI----VERRICEAKELGEVIVSGKFTIDDDVLNALI----------------G 339
              I GL+    VE+ IC  + L E  +    T    ++N L                  
Sbjct: 363 NMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAEN 422

Query: 340 SVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRN---------------KSDE 383
             + +D  +     + + +KG +   +  +  + KN  K N               K +E
Sbjct: 423 EGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEE 482

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            + V + + + D    + SYN +++ LC + R  +AY  ++EM  +GL PD+  Y+ L++
Sbjct: 483 AISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLID 542

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             CR + +  A  LW Q        +L+ +NI+I       +++ AL +F  M +    P
Sbjct: 543 GLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVP 602

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK 530
           D  T+ +++EGL +  +   A +++++
Sbjct: 603 DLVTHNTIMEGLYKAGDCVEALKIWDR 629


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 180/418 (43%), Gaps = 41/418 (9%)

Query: 140 SVFNEVKFNCE-DIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           S+FN +   C   + P+ C    L+      G +++    F  +   G   + I     +
Sbjct: 77  SLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLL 136

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL---R 253
              C+  +L + + +L + R  E       V    ++ GFC  KR EEA ++L  +   +
Sbjct: 137 KGLCDAKRLCEAMDILVK-RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQ 195

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            R C P+ ++Y IV   F   G V +   +  +    G+ P    Y   I GL      C
Sbjct: 196 GRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGL------C 249

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A+                           +D    +  F  MI+KG  P   T + L  
Sbjct: 250 KAQ--------------------------VVDRAEGV--FQQMIDKGVKPDNDTYNCLIH 281

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
                 K  E+V + + +SA+    D  +Y  ++++LC +GR REA  +   M RKG+ P
Sbjct: 282 GYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKP 341

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V+ Y  L+     +  L     L + M  +G S +   +NI+ + +++   I+ A+ +F
Sbjct: 342 NVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIF 401

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           + M ++G++PD   Y +L++ LC+   +  A   FN+ +N  V     + ++ +  LC
Sbjct: 402 NKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/458 (21%), Positives = 202/458 (44%), Gaps = 17/458 (3%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y +++  L  ++ ++  + V +Q+    +  D+  Y  +I   +     +
Sbjct: 235 QPNV----VTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWK 290

Query: 137 KAFSVFNE-----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +   +  E     +K +C   G     SLL  L ++G    A  +FD M  +G++ +   
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYG-----SLLNYLCNNGRCREARFLFDSMIRKGIKPNVAI 345

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +G+ I  +     L ++  +L+ +   EN +     I  +I   + K   ++EA  + ++
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMV--ENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNK 403

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++ +   PD + Y  + +    +G V +  +   +    GVAP    +   + GL    +
Sbjct: 404 MKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
             +AKE    +++     D    N ++ ++ +      A    + M   G  P + + + 
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTT 523

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L    C   + DE  +   V+ +     D  +YN ++   C +GR+ +AYGV +EM R G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + P V  Y++++           AK+L+  M  SG   N+  YNI+++  S+   ++ A 
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +LF ++  K    + TT+  ++  L +    + A  +F
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLF 681



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 105/485 (21%), Positives = 198/485 (40%), Gaps = 50/485 (10%)

Query: 88  HSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV- 145
           + +LK L  ++++  A+D ++K++     T D   Y  ++      K  ++A  + + + 
Sbjct: 133 NQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMA 192

Query: 146 KFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
                   P + +  + +    ++G +D A  +F EM  RG++ + + +   I   C+  
Sbjct: 193 DSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 204 KL----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +    G    M+D+  K +N   N       +IHG+    + +E  ++L+E+     KP
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYN------CLIHGYLSIGKWKEVVRMLEEMSAHGLKP 306

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y  +       G   E   +     + G+ P    Y   I G   +  + E  +L 
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366

Query: 320 EVIVSGKFTIDDDVLN-----------------------------------ALIGSVSSI 344
            ++V    + D  + N                                   ALI ++  +
Sbjct: 367 NLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKL 426

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A++ FN M+ +G  P +   ++L   LC  +K ++  E Y  +       D+  +
Sbjct: 427 GRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFF 486

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++  LCT G++ +A  +I  M+R G  P V  Y +L+   C    +  A K  D M +
Sbjct: 487 NTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLS 546

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   +  TYN L+  +   G I+ A  +F  ML  G+ P   TY+++L GL        
Sbjct: 547 VGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSE 606

Query: 524 AFEVF 528
           A E++
Sbjct: 607 AKELY 611



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/506 (20%), Positives = 209/506 (41%), Gaps = 25/506 (4%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           SQ  +   + +SY  ++       Q++   ++  ++    I  +   Y  +I  L + + 
Sbjct: 194 SQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQV 253

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
             +A  VF ++         +  N L+    S G     ++M +EMS  G++     +G 
Sbjct: 254 VDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGS 313

Query: 195 FIWKFCENAKLGQVLSMLDE-VRK--RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
            +   C N +  +   + D  +RK  + N  I G     ++IHG+     + E   +L+ 
Sbjct: 314 LLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYG-----ILIHGYATKGALSEMHDLLNL 368

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +      PD   + I+   +     + E   +  K ++ G++P   +Y   I  L    R
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGR 428

Query: 312 ICEA-----KELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTL 365
           + +A     + + E +    F     V N+L+  + ++D    A  F+  M+ +G  P +
Sbjct: 429 VDDAVLKFNQMMNEGVAPNIF-----VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDV 483

Query: 366 STLSNLSKNLCKRN---KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
              + +  NLC +    K+  L+++ + +        + SY  ++   C  GR+ EA   
Sbjct: 484 VFFNTILCNLCTKGQVMKAQRLIDLMERVGTR---PGVISYTTLIGGHCLVGRIDEAAKS 540

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           +  M   GL PD   YN+L+   CR   +  A  ++ +M  +G +  + TY+ ++     
Sbjct: 541 LDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT 600

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
                 A  L+ NM+  G   +   Y  +L GL +   +  AF++F    + D  L  + 
Sbjct: 601 TRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITT 660

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSS 568
            +  + +L + G    A  L   +SS
Sbjct: 661 FNIMIGALFKSGRNEDAMHLFATISS 686



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 197/487 (40%), Gaps = 79/487 (16%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  ++   +    ++ +  +L  +  N ++ D  ++  I  +  +     +A  +FN++K
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC---- 200
              + + P++ N  +L+  L   G +D+A+  F++M + GV  +   F   ++  C    
Sbjct: 406 Q--QGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 201 -ENAK---------------------------LGQVLSMLDEVRKRENSMINGSVIA-VL 231
            E AK                            GQV+     +   E       VI+   
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTT 523

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C   R++EA K LD +     KPD   Y  +   +   G + +   V ++  + G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 292 VAPRTNDYREFILGLIVERRICEAKELG-EVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           + P    Y   + GL   RR  EAKEL   +I SGK                    +  I
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK--------------------QWNI 623

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             +N +           L+ LSKN C     DE  ++++ L + D+  ++ ++N+M+  L
Sbjct: 624 WIYNII-----------LNGLSKNNC----VDEAFKLFQSLCSKDFQLEITTFNIMIGAL 668

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SGR  +A  +   +   GL PDV  Y  + E    E  L     L+  M  SG + N 
Sbjct: 669 FKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNS 728

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE------TNLQAA 524
           +  N L+ +    G+I  A      + EK  + +A+T   L+  L ++      T+L   
Sbjct: 729 RMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEK 788

Query: 525 FEVFNKS 531
           + V N++
Sbjct: 789 YRVLNEA 795



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 51/248 (20%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP---TLSTLSNLSKNLCKRNKSDELVEV 387
           DD L    G ++   P S I F + +    RV    + +T S L  +L  R   +  ++V
Sbjct: 31  DDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKV 90

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG-------------------------- 421
                      D  +Y++++   C  GRL   +                           
Sbjct: 91  TP---------DPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCD 141

Query: 422 ----------VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSG 468
                     +++ M   G  PDV  YN+L++  C E     A +L   M  S    C  
Sbjct: 142 AKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPP 201

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ +Y I+I+ F   G+++ A  LF  M+++G+ P+  TYT++++GLC+   +  A  VF
Sbjct: 202 NVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 529 NKSVNHDV 536
            + ++  V
Sbjct: 262 QQMIDKGV 269



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-------EIEGALRLFHNMLEK---G 500
           L  A KL+D +       ++  +N L++  S V        E E  + LF+ M+ +    
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V PD  TY+ L+   C+   L+  F  F   +     +   +++  +  LC       A 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 561 KLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQES 602
            +L     +LG +    S+  LLK   + +  E A+E +  + +S
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADS 194


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 167/360 (46%), Gaps = 11/360 (3%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           ++++G C   R +EA ++L  +     +C PD ++Y  V   F        +E  L K  
Sbjct: 56  ILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF-------KEGDLDKML 108

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
              ++P    Y   I  L   + + +A E+   +V      D    N+++ G  SS  P+
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 168

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            AIVF   M   G  P + T ++L   LCK  +  E  +++  ++      D+ +Y  ++
Sbjct: 169 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
               T G L E +G++  M R G+ P+   ++ L+ A  +++ +  A  ++ +M   G +
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  +I    + G +E A+  F  M+++G+ PD+  Y SL+  LC     + A E+
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587
           F + ++  + L+    ++ + S C+ G  + + KL   L   +G     + L + L  AR
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFD-LMVRIGVKPDIITLGRFLGSAR 407



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 113/524 (21%), Positives = 208/524 (39%), Gaps = 72/524 (13%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH--SP--LSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           P ++++ ++  GFF             SP  ++Y+SI+ +L  ++ ++    VL  +  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
            +  D   Y  I+         ++A       K   + + P++   NSL+  L  +G   
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLK--KMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            A K+FD M+ RG++     +G  +  +     L ++  +LD +  R     N  V ++L
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSIL 262

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +   + K ++VEEA  V  ++R +   P+ + Y  V +     G V +  +  ++    G
Sbjct: 263 VC-AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 292 VAPRTNDYREFILGL---------------IVERRIC------------EAKELGEVIVS 324
           + P +  Y   I  L               +++R IC              KE G VI S
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKE-GRVIES 380

Query: 325 GKF-------TIDDDV--LNALIGSVSSIDPRSAIVFFNF--MIEKGRV----------- 362
           GK         +  D+  L   +GS          ++F F  M   G             
Sbjct: 381 GKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGG 440

Query: 363 ---------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413
                    P L T + +   LCK   +D+ + +++ L   D   +  ++N+M+  L   
Sbjct: 441 NTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKV 500

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473
           GR  EA  +       GL P+   Y  + E    + LL    +L+  M  +GC+ +    
Sbjct: 501 GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGML 560

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATT---YTSLLEG 514
           N ++ +  + GEI  A      + EK  + +A+T   +  LL G
Sbjct: 561 NFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSG 604



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 176/479 (36%), Gaps = 84/479 (17%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRG-------VEFSTIGFGVFIWKFCENAKLGQVLS 210
           N LL  L  +     AL++   M+  G       V +ST+  G F        K G +  
Sbjct: 55  NILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF--------KEGDLDK 106

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           MLD+ R   N +   S+IA L     CK + V++A +VL  +      PD + Y  +   
Sbjct: 107 MLDQ-RISPNVVTYNSIIAAL-----CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           F   G   E  V LKK R  GV P    Y   +  L    R  EA+++ + +       D
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 DDVLNALIGSVSSIDPRSAIV----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                 L+   ++   + A+V      + M+  G  P     S L     K+ K +E + 
Sbjct: 221 ITTYGTLLQGYAT---KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V+  +       +  +Y  ++  LC SGR+ +A    ++M  +GL PD   YNSL+ + C
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE------------------------ 482
             D    A++L+ +M   G   +   +N +I    +                        
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDII 397

Query: 483 -VGEIEGALR-----------LFHNMLEKG--------------------VAPDATTYTS 510
            +G   G+ R           +F NM   G                      P   TY  
Sbjct: 398 TLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNI 457

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           +L GLC+      A  +F      D+ L     +  + +L + G    A  L    SS+
Sbjct: 458 ILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 516



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS--ANDYFTDMESYNVMVSFL 410
           F+ ++ +G +P + + + L   LC  N+S E +E+  +++    D   D+ SY+ +++  
Sbjct: 40  FDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN-- 96

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G  +E  G + +M  + + P+V  YNS++ A C+   +  A ++   M  SG   + 
Sbjct: 97  ---GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC 151

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  F   G+ + A+     M   GV PD  TY SL++ LC+      A ++F+ 
Sbjct: 152 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 211

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADARE 588
                +    +   T +     +G  +    LL  +  +  H + +V  IL+ + A   +
Sbjct: 212 MTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 271

Query: 589 VEMAI 593
           VE A+
Sbjct: 272 VEEAM 276


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 173/392 (44%), Gaps = 5/392 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+      G ++ A   F  M   GV  + + F  F+  FC+   + + + +  ++R 
Sbjct: 262 NALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRV 321

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGS 276
           R   M         +I G CK  R+++A  +LDE+ +R+  P + + Y ++ +       
Sbjct: 322 R--GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERK 378

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V E E VL+   K GV      Y   I G  + +   +A  L   + +    +D  +  A
Sbjct: 379 VAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGA 438

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI  + ++     A      M E G  P     + +     K  K  E + + + +  + 
Sbjct: 439 LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +  ++ +Y  ++  LC +G + EA     +M+  GLDP+V  Y +L++  C+   L  A 
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+++M   G S +   Y  L+  + + G +  A  L   M++ G+  D   YT  + G 
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           C    +  A EVF++ + H +   R++ +  +
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 202/458 (44%), Gaps = 49/458 (10%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMF 177
           +  +I  L +     +A S+F+ +K    ++G  P++   NSL+      G +D   ++ 
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMK----EMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
           +EM   G +   + +   I  FC+  ++         + KRE  M N    +  +   FC
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM-KREGVMANVVTFSTFV-DAFC 304

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   V EA K+  ++R+R    +   Y  + +     G + +  V+L +  + GV     
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            Y   + GL  ER++ EA+++  ++       ++ +   LI               +FM 
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHG-------------HFM- 410

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            K     L  LS +      +NK  EL              D+  Y  ++  LC   +L 
Sbjct: 411 NKNSEKALGLLSEM------KNKGLEL--------------DISLYGALIQGLCNVHKLD 450

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  ++ +M   GL+P+   Y ++M+AC +   +  A  +  ++  SG   N+ TY  LI
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
               + G I+ A+  F+ M + G+ P+   YT+L++GLC+   L  A ++FN+ V+  + 
Sbjct: 511 DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMS 570

Query: 538 LARSILSTFMISLCRRGH----FLVATKLL-RGLSSDL 570
           L + + +  +    ++G+    F +  K++  GL  DL
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 180/419 (42%), Gaps = 12/419 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  LA D       ++F+++    V      F + I   C+  +L +  S+    R
Sbjct: 160 CNHILLRLARDRSGRLVRRLFEQLPAPNV----FTFNIVIDFLCKEGELAEARSLFS--R 213

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            +E   +   V    +I G+ K   ++E  ++++E+R   CK D + Y  +   F   G 
Sbjct: 214 MKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR 273

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +          ++ GV      +  F+     E  + EA +L   +      +++     
Sbjct: 274 METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTC 333

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G+  +     AIV  + M+ +G    + T + L   LCK  K  E  +V +++    
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +   Y  ++     +    +A G++ EMK KGL+ D+S Y +L++  C    L  AK
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L  +M  SG   N   Y  ++    + G++  A+ +   +L+ G  P+  TY +L++GL
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           C+  ++  A   FNK  +  +       +  +  LC+ G    A +L      +G+S D
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           R+L V P T      +L L  +R     + L E + +      + V++ L       + R
Sbjct: 149 RELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEAR 208

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           S    F+ M E G +P + T ++L     K  + DE+ ++ + +  +    D+ +YN ++
Sbjct: 209 S---LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI 265

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +  C  GR+  AYG    MKR+G+  +V  +++ ++A C+E L+R A KL+ QM   G +
Sbjct: 266 NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMA 325

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  LI    + G ++ A+ L   M+ +GV  +  TYT L++GLC+E  +  A +V
Sbjct: 326 LNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDV 385

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFL 557
                   V  A  +L T +I     GHF+
Sbjct: 386 LRMMEKAGVR-ANELLYTTLI----HGHFM 410



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 172/393 (43%), Gaps = 18/393 (4%)

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169
           V  N +T  + V  F    L++     +A  +F +++     +       L+      G 
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVR-----EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKRENSMINGS 226
           +D+A+ + DEM  +GV  + + + V +   C+  K+ +   VL M+++   R N ++  +
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                +IHG    K  E+A  +L E++ +  + D   Y  + +    +  + E + +L K
Sbjct: 404 -----LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SS 343
             + G+ P    Y   +       ++ EA  + + I+   F  +     ALI  +    S
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           ID   AI  FN M + G  P +   + L   LCK    +E V+++  +       D   Y
Sbjct: 519 ID--EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVY 576

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++      G L +A+ +  +M   GL  D+  Y   +   C  +++  A++++ +M  
Sbjct: 577 TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIG 636

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            G + +   YN LISK+ ++G +E A+ L   M
Sbjct: 637 HGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 131/345 (37%), Gaps = 38/345 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++  L   R++   + VL+ ++   +  +  +Y  +I      KN++KA      
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA------ 417

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                                        L +  EM ++G+E     +G  I   C   K
Sbjct: 418 -----------------------------LGLLSEMKNKGLELDISLYGALIQGLCNVHK 448

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +  S+L   +  E+ +    +I   ++    K  +V EA  +L ++     +P+ I Y
Sbjct: 449 LDEAKSLL--TKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITY 506

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +     GS+ E      K R LG+ P    Y   + GL     + EA +L   +V 
Sbjct: 507 CALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVH 566

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              ++D  V  AL+ G +   +   A      MI+ G    L   +      C  N   E
Sbjct: 567 KGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPE 626

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
             EV+  +  +    D   YN ++S     G L EA  +  EM+R
Sbjct: 627 AREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 133/557 (23%), Positives = 219/557 (39%), Gaps = 82/557 (14%)

Query: 11  TRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGF 70
           T+ SQA+    N T P   W+  L+ +L +L    SLS + V + +   L+   + AL F
Sbjct: 156 TKRSQAMARLIN-TEP---WSHELQSSLAELA--PSLSKTTVLQTLQ--LIRTPAKALHF 207

Query: 71  FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130
           F W   +  FTH+  SY  +++ L  SR +NA  +                + F I    
Sbjct: 208 FRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARN----------------FVFSIEKKS 250

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM-SHRGVEF 187
            G  + K F    E+      + P +   NSLL+++   G    A ++FDEM    GV  
Sbjct: 251 GGAESIKVFKTMKEI-----GVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTP 305

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
            T  F +                                     +I GFC    V+E F 
Sbjct: 306 DTYTFNI-------------------------------------LIRGFCMNSMVDEGFW 328

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK--KRKLGVAPRTNDYREFILG 305
              E+   +C PD + Y  + +     G V     V+K   K+   ++P    Y   I G
Sbjct: 329 FFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRG 388

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRVP 363
             +++ + EA  L   +VS     +    N LI  +        I  +    + + G +P
Sbjct: 389 YCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIP 448

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              TL+ L K  C   K +E   V++ +S      D  +Y+V+V  LC  G  R A    
Sbjct: 449 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 508

Query: 424 QEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            E+  K       G  P V+ YN + E  C     + A++++ Q+   G + +  +Y  L
Sbjct: 509 DELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTL 567

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I      G  E    L   ML +   PDA TY  +++GL ++ +   A +   K +    
Sbjct: 568 ILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSH 627

Query: 537 MLARSILSTFMISLCRR 553
           +   +I  + + +L  +
Sbjct: 628 LPTTAIFHSILAALVEK 644



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 4/220 (1%)

Query: 352 FFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
            F+ M++  G  P   T + L +  C  +  DE    +K +S      D+ +YN +V  L
Sbjct: 293 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 352

Query: 411 CTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           C +G+++ A+ V++ M +K   L P+V  Y +L+   C +  +  A  L  +M + G   
Sbjct: 353 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 412

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNML-EKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
           N  TYN LI    E  +++    +   M+ + G  PD  T  +L++  C    L+ AF V
Sbjct: 413 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 472

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           F K     V    +  S  + SLC+RG F  A +    L+
Sbjct: 473 FEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELA 512



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 353 FNFMIE-KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           +  MIE  GR   L+   N   ++ K++   E ++V+K +        + ++N ++S + 
Sbjct: 223 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVL 282

Query: 412 TSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             GR   A  +  EM    G+ PD   +N L+   C   ++      + +M    C  ++
Sbjct: 283 KRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDV 342

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            TYN L+      G+++ A  +   M++K   ++P+  TYT+L+ G C + ++  A  + 
Sbjct: 343 VTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLL 402

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
            + V+  +   +   +T +  LC         ++L G+  D G
Sbjct: 403 AEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGG 445



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 28/253 (11%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR---- 417
            P+LS  + L      R  +  L   ++ + A  +  + +SY +M+  L  S  L     
Sbjct: 183 APSLSKTTVLQTLQLIRTPAKAL-HFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARN 241

Query: 418 ------------EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS- 464
                       E+  V + MK  G+ P V  +NSL+    +      AK+L+D+M  + 
Sbjct: 242 FVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTY 301

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G + +  T+NILI  F     ++     F  M      PD  TY +L++GLC+   ++ A
Sbjct: 302 GVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIA 361

Query: 525 FEVFNKSVNHDVMLARSIL--STFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHV 577
             V    V     L+ +++  +T +   C +     A  LL     RGL  +     ++ 
Sbjct: 362 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN---KITYN 418

Query: 578 ILLKSLADAREVE 590
            L++ L +A++++
Sbjct: 419 TLIQGLCEAQKLD 431



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/419 (19%), Positives = 160/419 (38%), Gaps = 69/419 (16%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQV-----KVNKITLDSSVYRFIIPSLI 130
           + PN + + ++Y ++++   + + +    S+L ++     K NKIT     Y  +I  L 
Sbjct: 371 KSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKIT-----YNTLIQGLC 425

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           + +   K   +   +  +   I P+ C  N+L+    + G ++ A  +F++MS   V+  
Sbjct: 426 EAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 484

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
           +  + V +   C+     +     DE+ ++E           +++H              
Sbjct: 485 SATYSVLVRSLCQRGDFRRAEEFFDELAEKE-----------ILLHDV------------ 521

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
                   CKP   AY  + E     G   + E V ++  K G     + Y+  ILG   
Sbjct: 522 -------GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS-YKTLILGHCR 573

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
           E       +L  +++   F  D +    +I G +   DP  A      M++   +PT + 
Sbjct: 574 EGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAI 633

Query: 368 LSNLSKNLCKRNK---------------------SDELVEVYKVLSANDYFTDMESYNVM 406
             ++   L ++ +                      D+      +L  N Y   ME    +
Sbjct: 634 FHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEE---L 690

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           VSFLC S +L EA  ++     K    D+   ++++   C+   +  A  L+ ++   G
Sbjct: 691 VSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 749


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 152/637 (23%), Positives = 277/637 (43%), Gaps = 49/637 (7%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
           +++   ++A +IS+ ++S+  ++    + TP          L  SL+   V  +++ ++L
Sbjct: 19  SLKLNQEIAGKISKTLVSSGAKSL---QTTP---------SLLSSLNSQTVHLILSNHIL 66

Query: 62  THHSLALGFFNWASQQPNFTHSPL-SYHSILKSLSLSRQINAIDSVLKQVKV----NKIT 116
           T  S  L FF++   + N+    L +Y +++  L  SR+ + +    K  ++    N   
Sbjct: 67  TAES-CLDFFHFI--RKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAA 123

Query: 117 LDSS--VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNAL 174
           +D    V   +I SL+            NE K N      +  + L  V A +     AL
Sbjct: 124 VDDGLRVPVTVIASLVD--------DACNESKCNRAKFKEKFFDLLFRVYADNKMFGEAL 175

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII- 233
           + F+ M  +G         V++       + GQV S L   R+  N  +  +V ++ I+ 
Sbjct: 176 EAFEHMEKKGFHIDERSCLVYLLAL---RRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 232

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF--KL-MGSVFEREVVLKKKRKL 290
            G CK   VE   K++DE+  +  K + + Y    E +  +L +G V E   +L    K 
Sbjct: 233 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE---ILTLMEKE 289

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSA 349
           GVA     Y   I G     +I EA+ L E +       D  V  ++I  +  S + + A
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +V F+ M +KG +P+  T   L   +CK  + +    +   +       +   +N ++  
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C SG + EA  +   M++KGL+ DV  YNS+    C+ +    AK L   M   G S N
Sbjct: 410 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 469

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             ++  LI  + + G    A R+F  M EKG  P+  TY  L++G  +  N++ A ++ +
Sbjct: 470 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKD 529

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLA 584
           +  N  ++      ++ +   C  G   +A KL      RGL  ++    ++  ++  L+
Sbjct: 530 ELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV---TYTAMISGLS 586

Query: 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSS 621
                E A +    ++E+  T    + + L  SL S+
Sbjct: 587 KDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 431 LDPDVSFYN--SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           LD +V+ Y+   +++  C+   +   +KL D++ A G   N+ TYN  I  + +  ++ G
Sbjct: 219 LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGG 278

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILS 544
              +   M ++GVA +  TYT L+ G      ++ A  +F     K +  DV +  SI+S
Sbjct: 279 VAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 338

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602
                 CR G+   A  L   ++    +  + ++  L+  +  A ++E A   +  +Q  
Sbjct: 339 CN----CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 394

Query: 603 SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGA 645
              +   I   L      S   +  L L   +++K L+S++ A
Sbjct: 395 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFA 437



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 6/265 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF--S 140
           S  +Y +++  +  + Q+ A   ++ +++   I L+  ++  +I    +     +A    
Sbjct: 364 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 423

Query: 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           V  E K    D+     NS+ + L      D A  +   M  RGV  +T+ F   I  +C
Sbjct: 424 VVMEKKGLESDVFAY--NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYC 481

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +     +   +  E+ ++ N  +   +   ++I G+ K   ++EA K+ DEL  R   PD
Sbjct: 482 KEGNFVEAKRVFREMEEKGN--VPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                 +     + G V     +  +  + G+ P    Y   I GL  + R  EA +L +
Sbjct: 540 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYD 599

Query: 321 VIVSGKFTIDDDVLNALIGSVSSID 345
            +     T DD V ++L+GS+ S +
Sbjct: 600 EMKETGLTPDDTVYSSLVGSLHSAE 624


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 190/438 (43%), Gaps = 7/438 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
           D   Y  +I    +  +  K +S +NE+    + I P +   NS++A L     +D A++
Sbjct: 87  DVVSYSTVINGFFKEGDLDKTYSTYNEMLD--QRISPNVVTYNSIIAALCKAQTVDKAME 144

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
           +   M   GV    + +   +  FC + +  + +  L ++R   + +    V    ++  
Sbjct: 145 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS--DGVEPDVVTYNSLMDY 202

Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
            CK  R  EA K+ D +  R  KP+   Y  + + +   G++ E   +L    + G+ P 
Sbjct: 203 LCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 262

Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFN 354
              +   +     + ++ EA  +   +       +     A+IG +  S     A+++F 
Sbjct: 263 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 322

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            MI++G  P     ++L   LC  NK +   E+   +       +   +N ++   C  G
Sbjct: 323 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 382

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           R+ E+  +   M R G+ PD+  Y++L++  C    +  A KL   M + G   +  TY+
Sbjct: 383 RVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYS 442

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
            LI+ + ++  ++ AL LF  M   GV+PD  TY  +L+GL Q     AA E++      
Sbjct: 443 TLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKS 502

Query: 535 DVMLARSILSTFMISLCR 552
              L  S  +  +  LC+
Sbjct: 503 GRQLELSTYNIILHGLCK 520



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 198/429 (46%), Gaps = 9/429 (2%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y  ++  L     +Q+A  + + +  +  D  P++ +  +++     +G +D     ++E
Sbjct: 54  YNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNE 113

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  + +  + + +   I   C+   + + + +L  + K  + ++   +    I+HGFC  
Sbjct: 114 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK--SGVMPDCMTYNSIVHGFCSS 171

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            + +EA   L ++R    +PD + Y  + +     G   E   +     K G+ P    Y
Sbjct: 172 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY 231

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIE 358
              + G   +  + E   L +++V      +  V + L+ + +  +    A++ F+ M +
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P   T   +   LCK  + ++ +  ++ +           YN ++  LCT  +   
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 351

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  +I EM  +G+  +  F+NS++++ C+E  +  ++KL+D M   G   ++ TY+ LI 
Sbjct: 352 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 411

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNH 534
            +   G+++ A +L  +M+  G+ PD  TY++L+ G C+ + ++ A  +F +     V+ 
Sbjct: 412 GYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSP 471

Query: 535 DVMLARSIL 543
           D++    IL
Sbjct: 472 DIITYNIIL 480



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 156/336 (46%), Gaps = 3/336 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           ++++G C   R +EA ++L  +     +C PD ++Y  V   F   G + +      +  
Sbjct: 56  ILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEML 115

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
              ++P    Y   I  L   + + +A E+   +V      D    N+++ G  SS  P+
Sbjct: 116 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 175

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            AIVF   M   G  P + T ++L   LCK  +  E  +++  ++      ++ +Y  ++
Sbjct: 176 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLL 235

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
               T G L E +G++  M R G+ P+   ++ L+ A  +++ +  A  ++ +M   G +
Sbjct: 236 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 295

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  +I    + G +E A+  F  M+++G++P    Y SL+ GLC     + A E+
Sbjct: 296 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             + ++  + L     ++ + S C+ G  + + KL 
Sbjct: 356 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 391



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 219/525 (41%), Gaps = 51/525 (9%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH---------SP--LSYHSILKSLSLSRQINAIDSV 106
           P ++++ ++  GFF        ++          SP  ++Y+SI+ +L  ++ ++    V
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVL 164
           L  +  + +  D   Y  I+         ++A       K   + + P++   NSL+  L
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLK--KMRSDGVEPDVVTYNSLMDYL 203

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
             +G    A K+FD M+ RG++     +G  +  +     L ++  +LD +  R     N
Sbjct: 204 CKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPN 262

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
             V ++L+   + K ++VEEA  V  ++R +   P+ + Y  V       G V +  +  
Sbjct: 263 HYVFSILVC-AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 321

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           ++    G++P    Y   I GL    +   A+EL              +L  L   +   
Sbjct: 322 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL--------------ILEMLDRGICL- 366

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
                 +FFN +I+                 CK  +  E  +++ ++       D+ +Y+
Sbjct: 367 ----NTIFFNSIIDSH---------------CKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++   C +G++ EA  ++  M   G+ PD   Y++L+   C+   ++ A  L+ +M +S
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS 467

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G S ++ TYNI++    +      A  L+  + + G   + +TY  +L GLC+      A
Sbjct: 468 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDA 527

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             +F      D+ L     +  + +L + G    A  L    SS+
Sbjct: 528 LRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 572



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 187/433 (43%), Gaps = 6/433 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  ++ +  + +  ++A  VF+++
Sbjct: 230 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 289

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +    +       +++ +L   G +++A+  F++M   G+    I +   I   C   K 
Sbjct: 290 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 349

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   ++ E+  R   +   ++    II   CK  RV E+ K+ D +     KPD I Y 
Sbjct: 350 ERAEELILEMLDR--GICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L   + S 
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS 467

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
             + D    N ++ G   +    +A   +  + + GR   LST + +   LCK   +D+ 
Sbjct: 468 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDA 527

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + +++ L   D   +  ++N+M+  L   GR  EA  +       GL P+   Y  + E 
Sbjct: 528 LRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 587

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
              + LL    +L+  M  +GC+ +    N ++ +  + GEI  A      + EK  + +
Sbjct: 588 IIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLE 647

Query: 505 ATT---YTSLLEG 514
           A+T   +  LL G
Sbjct: 648 ASTASLFIDLLSG 660



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 5/245 (2%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS--ANDYFTDMESYNVMVSFL 410
           F+ ++ +G +P + + + L   LC  N+S E +E+  +++    D   D+ SY+ +++  
Sbjct: 40  FDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G L + Y    EM  + + P+V  YNS++ A C+   +  A ++   M  SG   + 
Sbjct: 99  FKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC 158

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  F   G+ + A+     M   GV PD  TY SL++ LC+      A ++F+ 
Sbjct: 159 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 218

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADARE 588
                +    +   T +     +G  +    LL  +  +  H + +V  IL+ + A   +
Sbjct: 219 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 278

Query: 589 VEMAI 593
           VE A+
Sbjct: 279 VEEAM 283


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 185/450 (41%), Gaps = 51/450 (11%)

Query: 167 DGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE-- 219
           DGY     +   + +  EM  +G+  + + +G  +        L ++ S+L E+R+R   
Sbjct: 302 DGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLP 361

Query: 220 -NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            N  I  SVI  L     CK +   +A  VL ++    C PD I +  +       G V 
Sbjct: 362 PNVQIYNSVIDAL-----CKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQ 416

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E E +L++  +  + P  + Y   I G  V          GEVIV+    ++        
Sbjct: 417 EAERLLRETTRWELNPNLSSYTSLIHGFCVR---------GEVIVASNLLVE-------- 459

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
                            M+E+G  P + T   L   L    +  E + V + ++A     
Sbjct: 460 -----------------MMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLP 502

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   YNV++S LC    L  A  +I+EM  + + PD   Y +L++   R + L  A+K++
Sbjct: 503 DANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIF 562

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           + M   G   ++  YN +I  + + G +  A+     M + G  PD  TYT+L+ G  ++
Sbjct: 563 EFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQ 622

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSH 576
            N+  A  +    +           S+ +   C+ G    A  L   + S     +  ++
Sbjct: 623 GNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITY 682

Query: 577 VILLKSLADAREVEMAIEHIKW--IQESSP 604
            IL+ SL    +V  A  + ++  + + SP
Sbjct: 683 TILIGSLFKKDKVVRAAMYFEYMLLNQCSP 712



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 183/448 (40%), Gaps = 20/448 (4%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
            Y  ++  L +  + +K  S+ +E++        +I NS++  L        AL +  +M
Sbjct: 331 TYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQM 390

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKG 239
              G +   I F   I   C+  ++ +   +L E  + E   +N ++ +   +IHGFC  
Sbjct: 391 FAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWE---LNPNLSSYTSLIHGFCVR 447

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             V  A  +L E+  R   PD + +  +     + G V E  +V +K     + P  N Y
Sbjct: 448 GEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIY 507

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIE 358
              I GL  ++ +  A+ L E ++      D  V   LI G + +     A   F FM +
Sbjct: 508 NVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQ 567

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           KG  P +   + + K  C+    +E VE    +       D  +Y  ++      G +  
Sbjct: 568 KGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISG 627

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A  ++ +M ++   P+V  Y+SL+   C+      A+ L+  M + G   N+ TY ILI 
Sbjct: 628 ALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIG 687

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE------------TNLQ---A 523
              +  ++  A   F  ML    +P+  T  SL+ GLC               NL    A
Sbjct: 688 SLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGA 747

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLC 551
             ++F   VN       S  +  + SLC
Sbjct: 748 LLDIFRALVNDRCDPRNSAYNAIIFSLC 775



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 147/347 (42%), Gaps = 16/347 (4%)

Query: 213 DEVRKRENSMINGSVIA-----VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
           D+ RK  + M+     A      +++ G C    VE+  K+++      C P+ + Y ++
Sbjct: 241 DDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVL 300

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL----IVERRICEAKELGEVIV 323
            + +   G V    ++L +    G+ P    Y   +  L     +E+      E+ E  +
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRL 360

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                I + V++AL    S+     A+V    M   G  P   T S L   LC+  +  E
Sbjct: 361 PPNVQIYNSVIDALCKCRSA---SQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQE 417

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              + +  +  +   ++ SY  ++   C  G +  A  ++ EM  +G  PDV  + +L+ 
Sbjct: 418 AERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIH 477

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
                  +  A  + ++M A     +   YN+LIS   +   +  A  L   MLE+ V P
Sbjct: 478 GLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHP 537

Query: 504 DATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTF 546
           D   YT+L++G  +  +L  A ++F     K ++ DV+   +++  +
Sbjct: 538 DKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGY 584



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YNV++   C  G +     ++ EM+ KGL P V  Y +LM    R+  L     L  +M 
Sbjct: 297 YNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMR 356

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
                 N++ YN +I    +      AL +   M   G  PDA T+++L+ GLCQE  +Q
Sbjct: 357 ERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQ 416

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
            A  +  ++   ++    S  ++ +   C RG  +VA+ LL     RG + D+
Sbjct: 417 EAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDV 469



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 19/196 (9%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G VP     + L    C+R      + +   + A      + +Y  ++S+L   G L + 
Sbjct: 289 GCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKI 348

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             ++ EM+ + L P+V  YNS+++A C+      A  +  QMFA GC  +  T++ LIS 
Sbjct: 349 ASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISG 408

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
             + G ++ A RL        + P+ ++YTSL+ G C               V  +V++A
Sbjct: 409 LCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFC---------------VRGEVIVA 453

Query: 540 RSILSTFMISLCRRGH 555
               S  ++ +  RGH
Sbjct: 454 ----SNLLVEMMERGH 465



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 172/448 (38%), Gaps = 22/448 (4%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+S++ +L   R  +    VLKQ+       D+  +  +I  L Q    Q+A  +  E  
Sbjct: 367 YNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETT 426

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               ++ P + +  SL+      G +  A  +  EM  RG     + FG  I       +
Sbjct: 427 R--WELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQ 484

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + L + +++  R+  ++  + I  ++I G CK K +  A  +++E+  +   PD   Y
Sbjct: 485 VSEALLVREKMAARQ--LLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVY 542

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + + F    S+ E   + +   + G+ P    Y   I G      + EA E    +  
Sbjct: 543 TTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRK 602

Query: 325 GKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D+     LIG  +     S A+     M+++   P +   S+L    CK   +D 
Sbjct: 603 VGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDA 662

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              ++  + +   F ++ +Y +++  L    ++  A    + M      P+    +SL+ 
Sbjct: 663 AECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVT 722

Query: 444 ACCREDL------------LRPAKKLWD---QMFASGCSGNLKTYNILISKFSEVGEIEG 488
             C                L     L D    +    C      YN +I        +  
Sbjct: 723 GLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGE 782

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           AL L + M  KG  PD+ T+ SLL G C
Sbjct: 783 ALDLKNKMANKGYKPDSATFLSLLYGFC 810



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 84/447 (18%), Positives = 174/447 (38%), Gaps = 79/447 (17%)

Query: 56  INPYLLTHHSLALGFF---------NWASQQPNFTHSP--LSYHSILKSLSLSRQINAID 104
           +NP L ++ SL  GF          N   +     H+P  +++ +++  L ++ Q++   
Sbjct: 430 LNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEAL 489

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLA 162
            V +++   ++  D+++Y  +I  L + K    A ++  E+    +++ P+  +  +L+ 
Sbjct: 490 LVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLE--QNVHPDKYVYTTLID 547

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
               +  +D A K+F+ M  +G+    +G+   I  +C+   + + +  +  +RK     
Sbjct: 548 GFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKV--GR 605

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           I        +I G+ K   +  A  +L ++  R C+P+ +AY  +   +  +G     E 
Sbjct: 606 IPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAEC 665

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           +       G+ P    Y                      I+ G     D V+ A +    
Sbjct: 666 LFGSMESQGLFPNVITY---------------------TILIGSLFKKDKVVRAAM---- 700

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                    +F +M+     P   TL +L   LC    S                     
Sbjct: 701 ---------YFEYMLLNQCSPNDYTLHSLVTGLCNSMAS--------------------- 730

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGL----DPDVSFYNSLMEACCREDLLRPAKKLW 458
              ++S  C+S       G + ++ R  +    DP  S YN+++ + C  ++L  A  L 
Sbjct: 731 ---IISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLK 787

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGE 485
           ++M   G   +  T+  L+  F  VG+
Sbjct: 788 NKMANKGYKPDSATFLSLLYGFCSVGK 814


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 229/536 (42%), Gaps = 75/536 (13%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQ-PNFTHSPLSYHSILKSLSLS---RQIN 101
           SL+P+  + ++    L    LAL FF+  S   P F H   +Y  IL  LS S   ++I+
Sbjct: 127 SLTPAEASEILKS--LNSPDLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRID 184

Query: 102 AIDSVLKQVKVNKIT--------------------------------LDSSVYRFIIPSL 129
            +  +L Q+  ++I                                 L++  YR ++ + 
Sbjct: 185 QVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWDLRLNAYTYRCLLQAH 244

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           I+ +++ +AF+V+ E+  N   +     N LL  LA D  +D + K+F +M  +      
Sbjct: 245 IRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDE 304

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKV 248
             + + I    +  +  + L++ +E+  +       ++IA   +I    K   V++A  +
Sbjct: 305 YTYTIMIRMTGKMGRAEESLALFEEMLTKG---CTPNLIAYNTMIQALSKSGMVDKAILL 361

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL----------------KKKRKLGV 292
              +    C+P+   Y I+       G +   + VL                +   KLG 
Sbjct: 362 FCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGH 421

Query: 293 APRT----------------NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +                   + Y   +  L    +  EA EL   +     + D  + N 
Sbjct: 422 SSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNT 481

Query: 337 LIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ ++  +   S +   +  M + G  P + T + L  +L +  K  E VEV++ L ++D
Sbjct: 482 VLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD 541

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ SYN +++ L  +G + EA+    EM+ KGL+PDV  Y++L+E   + D +  A+
Sbjct: 542 CKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMAR 601

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            L+D+M   GC  N+ TYNIL+      G     + L+  + E+G+ PD+ TY  L
Sbjct: 602 SLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 44/256 (17%)

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ V  EM   G   D+  YN L++A  +++ L  + K++  M    C+ +  TY I+I 
Sbjct: 253 AFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIR 312

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH---- 534
              ++G  E +L LF  ML KG  P+   Y ++++ L +   +  A  +F   + +    
Sbjct: 313 MTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRP 372

Query: 535 ---------DVMLA-------------------RSILSTFMISLCRRGHFLVATKLLRGL 566
                    +V++A                   +SI +  + +L + GH   A +L   +
Sbjct: 373 NEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM 432

Query: 567 SS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE---SSPTMLQEISAELFASLSSS 621
            S  D G  D+++ +L+SL    +   AIE +  + E   S+ TM+          L   
Sbjct: 433 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQV 492

Query: 622 SYPEPILLLLHALQEK 637
           S+       LH L EK
Sbjct: 493 SH-------LHDLYEK 501



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 37/300 (12%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++    K ++++ ++KV  +++++ C PD   Y I+      MG   E   + ++    
Sbjct: 274 MLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTK 333

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   I  L                 S    +D                  AI
Sbjct: 334 GCTPNLIAYNTMIQAL-----------------SKSGMVD-----------------KAI 359

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           + F  MI+    P   T S +   L    +   L EV +V   ++ F +   Y  +V  L
Sbjct: 360 LLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV---SNKFINKSIYAYLVRTL 416

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G   EA+ +   M       D   Y S++E+ CR      A +L  ++   G S + 
Sbjct: 417 SKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDT 476

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN ++S   ++ ++     L+  M + G  PD  TY  L+  L +   ++ A EVF +
Sbjct: 477 MMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEE 536


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 158/336 (47%), Gaps = 10/336 (2%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
           ++++G C   R +EA ++L  +     +C PD ++Y  V   F        +E  L K  
Sbjct: 56  ILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF-------KEGDLDKML 108

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
              ++P    Y   I  L   + + +A E+   +V      D    N+++ G  SS  P+
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 168

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            AIVF   M   G  P + T ++L   LCK  +  E  +++  ++      D+ +Y  ++
Sbjct: 169 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
               T G L E +G++  M R G+ P+   ++ L+ A  +++ +  A  ++ +M   G +
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  +I    + G +E A+  F  M+++G+ PD+  Y SL+  LC     + A E+
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           F + ++  + L+    ++ + S C+ G  + + KL 
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLF 384



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 153/361 (42%), Gaps = 28/361 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRG-------VEFSTIGFGVFIWKFCENAKLGQVLS 210
           N LL  L  +     AL++   M+  G       V +ST+  G F        K G +  
Sbjct: 55  NILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF--------KEGDLDK 106

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           MLD+ R   N +   S+IA L     CK + V++A +VL  +      PD + Y  +   
Sbjct: 107 MLDQ-RISPNVVTYNSIIAAL-----CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           F   G   E  V LKK R  GV P    Y   +  L    R  EA+++ + +       D
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 DDVLNALIGSVSSIDPRSAIV----FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                 L+   ++   + A+V      + M+  G  P     S L     K+ K +E + 
Sbjct: 221 ITTYGTLLQGYAT---KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           V+  +       +  +Y  ++  LC SGR+ +A    ++M  +GL PD   YNSL+ + C
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
             D    A++L+ +M   G   +   +N +I    + G +  + +LF  M+  GV PD  
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDII 397

Query: 507 T 507
           T
Sbjct: 398 T 398



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS--ANDYFTDMESYNVMVSFL 410
           F+ ++ +G +P + + + L   LC  N+S E +E+  +++    D   D+ SY+ +++  
Sbjct: 40  FDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN-- 96

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G  +E  G + +M  + + P+V  YNS++ A C+   +  A ++   M  SG   + 
Sbjct: 97  ---GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC 151

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            TYN ++  F   G+ + A+     M   GV PD  TY SL++ LC+      A ++F+ 
Sbjct: 152 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 211

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADARE 588
                +    +   T +     +G  +    LL  +  +  H + +V  IL+ + A   +
Sbjct: 212 MTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 271

Query: 589 VEMAI 593
           VE A+
Sbjct: 272 VEEAM 276



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 118/267 (44%), Gaps = 10/267 (3%)

Query: 58  PYLLTHHSLALGFFNWASQQPNFTH--SP--LSYHSILKSLSLSRQINAIDSVLKQVKVN 113
           P ++++ ++  GFF             SP  ++Y+SI+ +L  ++ ++    VL  +  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
            +  D   Y  I+         ++A       K   + + P++   NSL+  L  +G   
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLK--KMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            A K+FD M+ RG++     +G  +  +     L ++  +LD +  R     N  V ++L
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSIL 262

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +   + K ++VEEA  V  ++R +   P+ + Y  V +     G V +  +  ++    G
Sbjct: 263 VC-AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 292 VAPRTNDYREFILGLIVERRICEAKEL 318
           + P +  Y   I  L +  +  +A+EL
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEEL 348


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 203/472 (43%), Gaps = 8/472 (1%)

Query: 135 TQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
           + +  S F E+  +   + P +  CN +L VL      D+   ++ +M   GVE S   +
Sbjct: 175 STQCLSAFQEMARH--GVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTY 232

Query: 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
              +  FC+  ++ Q +++L ++  R    +   V   ++I+G  +   +E+A +++D +
Sbjct: 233 NTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIM 292

Query: 253 RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312
           R+ + K     Y  +         V +   +L +    G+ P    Y   I GL      
Sbjct: 293 RLSK-KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNA 351

Query: 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
             A+   + + +     D    N+LI G   + + + A+  F  +   G  PT+ T + L
Sbjct: 352 EAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
               C+    +    + + ++  D   D+ +Y ++++  C    L        EM  KGL
Sbjct: 412 IDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGL 471

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
           +PD   YN+ + A      +  A +L ++M   G S +  TYN+LI    + G ++ A  
Sbjct: 472 EPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYV 531

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L+  M+  G+  D  TYT L+   C+   L  A  +F+  V   +  +    + F+ + C
Sbjct: 532 LWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYC 591

Query: 552 RRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQE 601
           RRG+  +A    R +  +    +  ++ +L+ +L      E A +H   + E
Sbjct: 592 RRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLE 643



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 210/488 (43%), Gaps = 21/488 (4%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFD 178
            Y  ++ S  +     +A ++  +++       P     N ++  LA  G ++ A ++ D
Sbjct: 231 TYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVD 290

Query: 179 EM----SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LII 233
            M          ++ +  G+    F E A      ++L E+   EN  I  +V+    +I
Sbjct: 291 IMRLSKKASAFTYNPLITGLLARDFVEKAG-----ALLLEM---ENEGIVPTVVTYNTLI 342

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
            G  K    E A    DE+R +   PD I Y  +   +   G++ +   +    ++ G+ 
Sbjct: 343 DGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLG 402

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI-VF 352
           P    Y   I G      +  A+ L E +       D      L+     +   + + +F
Sbjct: 403 PTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIF 462

Query: 353 FNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           F+ M+ KG  P   +  + +S  L     ++   ++ + +      +D  +YNV++  LC
Sbjct: 463 FDEMLSKGLEPDCFAYNTRISAELTIGAITNAF-QLREEMMLRGISSDTVTYNVLIDGLC 521

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            +G L++AY +  +M   GL  D   Y  L+ A C    L  AK ++D M ASG S ++ 
Sbjct: 522 KTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVV 581

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY I I  +   G +  A   F  MLE+GV P+  TY  L+  LC+    ++A++ F++ 
Sbjct: 582 TYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEM 641

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREV 589
           +   ++  +   +  +   C+ G+++ A +L   +     H D  +H  L K   +    
Sbjct: 642 LERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGHMY 701

Query: 590 EMAIEHIK 597
           + A+++++
Sbjct: 702 D-AVQYLE 708



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 40/243 (16%)

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +S KF+ +     ++  S S+      +  F  M   G  P +   + + + L    + D
Sbjct: 156 MSTKFSAECQAQKSVPASCST----QCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWD 211

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG---LDPDVSF-- 437
           ++  VY  +        + +YN ++   C +GR+ +A  ++++M+ +    L  DV++  
Sbjct: 212 DMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNV 271

Query: 438 -------------------------------YNSLMEACCREDLLRPAKKLWDQMFASGC 466
                                          YN L+      D +  A  L  +M   G 
Sbjct: 272 VINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGI 331

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
              + TYN LI    + G  E A   F  M  KG+ PD  TY SL+ G C+  NL+ A  
Sbjct: 332 VPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALC 391

Query: 527 VFN 529
           +F 
Sbjct: 392 LFG 394


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 143/674 (21%), Positives = 278/674 (41%), Gaps = 121/674 (17%)

Query: 30  WTPLLEQTLHQLGLRDSLS-PSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYH 88
           W P +E+ L+     D +S P ++  V+    L   ++A  +F W  ++    H P  Y+
Sbjct: 83  WGPDVEEALNVF---DEMSQPEVIVGVMKR--LKDVNVAFQYFRWVERKTQQAHCPEVYN 137

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN---EV 145
           + L  ++ +R ++ ++ +L+++ V    L + V   ++ S ++    ++AF V     + 
Sbjct: 138 AFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKF 197

Query: 146 KF----------------------------NCEDIGPE----ICNSLLAVLASDGYIDNA 173
           KF                              ++IG E    +  +L+ V A +G ID A
Sbjct: 198 KFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAA 257

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           L + DEM         + + V I  F +  K+        E++ +   ++   V    +I
Sbjct: 258 LSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ--GLVPDDVTYTTLI 315

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSVFERE------ 281
              CK +R++EA ++ +EL +    P   AY  +      A +F    S+ ER+      
Sbjct: 316 GVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCI 375

Query: 282 ----------VVLKKKRKLGVAPRTNDYRE------FILGLIVERRICEAKELGEV---- 321
                       L +K K+  A R +D              I+   +C+A EL       
Sbjct: 376 PSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQ 435

Query: 322 -----------IVSGKFTID--------DDVLNALIG---SVSSIDPRS----------- 348
                      I++    ID        D+  +  +G    V S D R+           
Sbjct: 436 DTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRR 495

Query: 349 -----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A   +  M++  ++P +   ++L +N  K  + ++  ++YK +       D+   
Sbjct: 496 GRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLL 555

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N  +  +  +G + +   + +E+K +GL PDV  Y+ L+    +    R   KL+ +M  
Sbjct: 556 NSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKE 615

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   ++  YN +I  F + G+++ A +L   M  KG+ P   TY S+++GL +   L  
Sbjct: 616 QGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDE 675

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGH----FLVATKLL-RGLSSDLGHSDSHVI 578
           A+ +F ++ +  V L   I S+ +    + G     +L+  +L+ +GL+ +   S +   
Sbjct: 676 AYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN---SYTWNC 732

Query: 579 LLKSLADAREVEMA 592
           LL +L  A E++ A
Sbjct: 733 LLDALVKAEEIDEA 746



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 206/471 (43%), Gaps = 9/471 (1%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A  FF+    Q       ++Y +++  L  +R+++    + +++ +N+       Y  +
Sbjct: 291 MAWKFFHEMKAQ-GLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTM 349

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I          +A+S+    K   +   P +   N +L  L   G ++ AL++ DEM   
Sbjct: 350 IMGYGSAGKFDEAYSLLERQKR--KGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQD 407

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
                T  + + I   C+  +L   L + D ++  E  +    +   ++I   CK ++++
Sbjct: 408 AAPNLTT-YNILIDMLCKAGELEAALKVQDTMK--EAGLFPNIMTVNIMIDRLCKAQKLD 464

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA  +   L  + C PD   +  + +     G V +   + +K       P    Y   I
Sbjct: 465 EACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLI 524

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRV 362
                  R  +  ++ + +V    + D  +LN+ +  V  + +       F  +  +G V
Sbjct: 525 QNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLV 584

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + + S L   L K   S E  +++  +       D+ +YN ++   C SG++ +AY +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++EMK KGL P V  Y S+++   + D L  A  L+++  + G   N+  Y+ LI  F +
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK 704

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
           VG I+ A  +   +++KG+ P++ T+  LL+ L +   +  A   F    N
Sbjct: 705 VGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/481 (21%), Positives = 206/481 (42%), Gaps = 39/481 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++     + + +   S+L++ K          Y  I+  L +    ++A  + +E+
Sbjct: 345 AYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   +D  P +   N L+ +L   G ++ ALK+ D M   G+  + +   + I + C+  
Sbjct: 405 R---QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQ 461

Query: 204 KLGQVLS-------------------MLDEVRKR--------------ENSMINGSVIAV 230
           KL +  S                   ++D + +R              ++  I   V+  
Sbjct: 462 KLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYT 521

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I  F K  R E+  K+  E+  R C PD +      +     G V +   + ++ +  
Sbjct: 522 SLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQ 581

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   I GL+      E  +L   +      +D    N +I G   S     A
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M  KG  PT+ T  ++   L K ++ DE   +++   +     ++  Y+ ++  
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               GR+ EAY +++E+ +KGL P+   +N L++A  + + +  A+  +  M    CS N
Sbjct: 702 FGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPN 761

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+I+I+    + +   A   +  M ++G+ P+  TYT+++ GL +  N+  A  +F+
Sbjct: 762 AMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFD 821

Query: 530 K 530
           +
Sbjct: 822 R 822



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 182/410 (44%), Gaps = 7/410 (1%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           DS  +  +I  L +      A+S++ ++  + +     +  SL+      G  ++  K++
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIY 540

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
            EM HRG     +    ++    +  ++ +  ++ +E++ +   ++       ++IHG  
Sbjct: 541 KEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQ--GLVPDVRSYSILIHGLV 598

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K     E +K+  E++ +    D +AY  V + F   G V +   +L++ +  G+ P   
Sbjct: 599 KAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVV 658

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPRSAIVFFN 354
            Y   + GL    R+ EA  L E   S    ++  + ++LI   G V  ID   A +   
Sbjct: 659 TYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRID--EAYLILE 716

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            +++KG  P   T + L   L K  + DE    ++ +       +  +Y++M++ LC   
Sbjct: 717 ELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIR 776

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +  +A+   QEM+++GL P+   Y +++    +   +  A+ L+D+  ASG   +   YN
Sbjct: 777 KFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYN 836

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            +I   S   +   A  +F     KG   ++ T   LL+ L +   L+ A
Sbjct: 837 AMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 198/458 (43%), Gaps = 46/458 (10%)

Query: 113 NKITLDS-----SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLA 165
           NKIT D        Y  +I       N +KA  ++ ++K N   I P +   NSLL    
Sbjct: 349 NKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLN--GIPPSVFNVNSLLRGYL 406

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
                + A K+FDE    GV  +   + + +   C+  K+ +  S+LD +  +   M+  
Sbjct: 407 KAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQ--GMVPN 463

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            V    +I G C+   ++ A  V  ++  R+ KP+ + Y I+ +     G   +   +  
Sbjct: 464 VVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFD 523

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
           +   L +AP    +   I GL      C+  ++ E                         
Sbjct: 524 QMLSLNIAPTDFTFNTIINGL------CKVGQMSEA------------------------ 553

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            R  +  F   +E+G +P+  T +++     K    D  + VY+ +       ++ +Y  
Sbjct: 554 -RDKLKNF---LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTS 609

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++  C S R+  A     EM+ KGL+ DV+ Y++L++  C+   +  A+ L+ ++   G
Sbjct: 610 LINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG 669

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            S N   YN +IS F ++  +E AL  +  M+   +  D  TYT+L++GL +E  L  A 
Sbjct: 670 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFAS 729

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +++ + ++  ++         +  LC +G    A K+L
Sbjct: 730 DLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKIL 767



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/527 (20%), Positives = 211/527 (40%), Gaps = 65/527 (12%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            + H ++++     ++   +   ++ K   + LD+  Y  II ++ +  N+     +  E
Sbjct: 221 FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEE 280

Query: 145 VK----------------------------------FNC-EDIGPEICNSLLAVLASDGY 169
           +K                                   NC + +   +  SL+    + G 
Sbjct: 281 MKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGN 340

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D+AL +F++++  G+  + + + V I   C +  + +   +  +++      +NG   +
Sbjct: 341 LDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK------LNGIPPS 394

Query: 230 VL----IIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEFKLMGSVFEREVVL 284
           V     ++ G+ K    EEA K+ DE    +C   +   Y I+       G + E   +L
Sbjct: 395 VFNVNSLLRGYLKAPLWEEASKLFDE--AVDCGVANIFTYNIMMSWLCKGGKMDEACSLL 452

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRI---------CEAKELGEVIVSGKFTIDDDVLN 335
                 G+ P    Y + ILG   +  +           A++L   +V+    ID     
Sbjct: 453 DNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILID----- 507

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
              G+    D   A+  F+ M+     PT  T + +   LCK  +  E  +  K      
Sbjct: 508 ---GNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEG 564

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +     +YN +V      G +  A  V +EM   G+ P+V  Y SL+   C+ + +  A 
Sbjct: 565 FIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLAL 624

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           K  D+M   G   ++  Y+ LI  F +  ++E A  LF  +LE G++P+   Y S++ G 
Sbjct: 625 KTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF 684

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
               N++AA   + K +N  +       +T +  L + G  + A+ L
Sbjct: 685 RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDL 731



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 196/482 (40%), Gaps = 36/482 (7%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  FN  ++   F +  ++Y  +++    S  I     +  Q+K+N I         ++
Sbjct: 344 ALNLFNKITEDGLFPNK-VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLL 402

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
              ++    ++A  +F+E   +C        N +++ L   G +D A  + D M ++G+ 
Sbjct: 403 RGYLKAPLWEEASKLFDEA-VDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMV 461

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE--------NSMINGSV----------- 227
            + + +   I   C    +    S+  ++  R+        + +I+G+            
Sbjct: 462 PNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDL 521

Query: 228 --------IAVL------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
                   IA        II+G CK  ++ EA   L         P  + Y  + + F  
Sbjct: 522 FDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 581

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G++     V ++  + GV+P    Y   I G     RI  A +  + +      +D   
Sbjct: 582 EGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA 641

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            +ALI G     D  SA   F  ++E G  P     +++       N  +  +  YK + 
Sbjct: 642 YSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMI 701

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +    D+ +Y  ++  L   GRL  A  +  EM  KG+ PD+  ++ L+   C +  L 
Sbjct: 702 NDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLE 761

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+K+ ++M     + ++  YN LI+ +   G ++ A  L   ML++G+ PD  TY  L+
Sbjct: 762 NARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 821

Query: 513 EG 514
            G
Sbjct: 822 NG 823



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 113/502 (22%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSL 160
           +D ++   K     LD  V+ +++ + I+    + A   FN +   C+D+ P +   N L
Sbjct: 134 VDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMI--CQDVIPWVPYMNIL 191

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           L  L     I     ++++M  RG                                    
Sbjct: 192 LTALVRRNMIGELRDLYNKMVLRG------------------------------------ 215

Query: 221 SMINGSVIAVLIIHGFC-KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
             I G    V ++   C K  RVEEA +   E + R  K D  AY I+ +          
Sbjct: 216 --IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQ---------- 263

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339
              V KK       P +N      LGL     + E KE G V     FT      + ++ 
Sbjct: 264 --AVCKK-------PNSN------LGL---ELLEEMKERGWVPSEATFT------SVIVA 299

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            V+  +   A+     MI  G+   L   ++L K  C +   D  + ++  ++ +  F +
Sbjct: 300 CVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPN 359

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +Y+V++   C SG + +A  +  +MK  G+ P V   NSL+    +  L   A KL+D
Sbjct: 360 KVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFD 419

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------------- 506
           +    G + N+ TYNI++S   + G+++ A  L  NM+ +G+ P+               
Sbjct: 420 EAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKG 478

Query: 507 ----------------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
                                 TY+ L++G  ++ + + A ++F++ ++ ++       +
Sbjct: 479 NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFN 538

Query: 545 TFMISLCRRGHFLVATKLLRGL 566
           T +  LC+ G    A   L+  
Sbjct: 539 TIINGLCKVGQMSEARDKLKNF 560



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 38/299 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NS++     +G ID+AL ++ EM   GV  + + +   I  FC++ ++   L   DE+R+
Sbjct: 573 NSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMRE 632

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   +   +  A  +I GFCK + +E A  +  EL      P+ I Y  +   F+ + ++
Sbjct: 633 KGLELDVTAYSA--LIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNM 690

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
               V  KK     +      Y   I GL+ E R+  A +L                   
Sbjct: 691 EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDL------------------- 731

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                          +  M+ KG VP + T   L   LC + + +   ++ + +   +  
Sbjct: 732 ---------------YMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMT 776

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED--LLRPA 454
             +  YN +++     G L+EA+ +  EM  +GL PD   Y+ L+    + D  L RP+
Sbjct: 777 PSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPS 835



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 38/271 (14%)

Query: 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           F +D  V N L+ + + +    +AI  FN MI +  +P +  ++ L   L +RN   EL 
Sbjct: 146 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 205

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
           ++Y  +     + D  + +VMV      GR+ EA    +E K +G+  D   Y+ +++A 
Sbjct: 206 DLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 265

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C+    +P   L                                L L   M E+G  P  
Sbjct: 266 CK----KPNSNL-------------------------------GLELLEEMKERGWVPSE 290

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            T+TS++     + N+  A  +  + +N    +   + ++ M   C +G+   A  L   
Sbjct: 291 ATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNK 350

Query: 566 LSSD--LGHSDSHVILLKSLADAREVEMAIE 594
           ++ D    +  ++ +L++   ++  +E A E
Sbjct: 351 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 381


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 223/531 (41%), Gaps = 14/531 (2%)

Query: 30  WTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHS 89
           W+P LE  L  L LR  LSP  V  V+          A  FF WA +Q  + H+P  +  
Sbjct: 75  WSPKLEAQLRHL-LR-VLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDE 132

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  LS +R  +    V++ +    +   +  +  ++ S  +    + A  V + ++ + 
Sbjct: 133 MLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDG 192

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
                 ICN  + VL   G +D AL+  + M   GVE     +   I   C   ++   +
Sbjct: 193 CAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAM 252

Query: 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVA 268
            M+  +   +N      +    ++   CK KRVEE   +L  +R      PD + Y ++ 
Sbjct: 253 EMIGVML--QNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLI 310

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKF 327
                 G   E    L++            Y   +    +  R+ EAKE+ GE+I  G  
Sbjct: 311 HGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG-- 368

Query: 328 TIDDDVLN---ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               DV+     + G     +   A      M +    P   T + L   LCK  K+ E 
Sbjct: 369 -CQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEA 427

Query: 385 VEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
            E+    S  +++T  + +Y+V++      G+L+E+  V+ +M +KG  P     N L+ 
Sbjct: 428 WELLNK-SEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIH 486

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C++     AK   +Q  + GC+ N+  +  +I  FS  G++E AL L  +M      P
Sbjct: 487 ALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHP 546

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           D  TYT +++ L ++  L+ A  +  K +N  V+       T +   C +G
Sbjct: 547 DVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 197/468 (42%), Gaps = 53/468 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           +SY++++  L   +++  +  +L++++ +  +  D   Y  +I  L +  +  +A     
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLR 327

Query: 144 EV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           E    +F  +++G    ++++     +G +  A ++  EM  +G +   + +   +  FC
Sbjct: 328 ESEGKRFRVDEVG---YSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFC 384

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +L Q   M+  + K  N     +V    +++G CK  +  EA+++L++       P 
Sbjct: 385 RIGELDQARKMMKHMYK--NDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPS 442

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y +V   F+  G + E   V+ +  + G  P T +    I  L  +R+  EAK+  E
Sbjct: 443 DITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFME 502

Query: 321 VIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
              S   TI+      +I   S   D  SA+   + M    R P + T + +   L K+ 
Sbjct: 503 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKK- 561

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
                                             GRL+EA G++++M  +G+ P    Y 
Sbjct: 562 ----------------------------------GRLKEATGLVEKMLNRGVLPTPVTYR 587

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKT-YNILISKFSEVGEIEGALRLFHNMLE 498
           +++   C +  L     L ++M A      +K+ YN ++ K    G++  A  L + +L 
Sbjct: 588 TVIHRYCEKGNLEDLLNLLEKMLARQ---EMKSAYNQVVEKLCAFGKLNEAYSLLYKILR 644

Query: 499 KGVAPDATTYTSLLEG-LCQETNLQA---AFEVFNKSVNHDVMLARSI 542
                DA T   L+E  L +   LQA   A  +F +++  DV L + +
Sbjct: 645 TASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQKV 692



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           RSA+   + M + G  P +S + N++ N L    + D+ +E  + +       D+ +YN 
Sbjct: 179 RSAMRVLHLMQKDGCAPDIS-ICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNC 237

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-S 464
           ++  LC + R+ +A  +I  M + G  PD   Y ++M   C+E  +   + L  +M   +
Sbjct: 238 LIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA 297

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   +  TYN+LI   ++ G  + AL        K    D   Y++++   C    +  A
Sbjct: 298 GLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEA 357

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKS 582
            E+  + ++          ST +   CR G    A K+++ +  +    ++ +H  LL  
Sbjct: 358 KEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNG 417

Query: 583 LADAREVEMAIE 594
           L    +   A E
Sbjct: 418 LCKVGKTSEAWE 429



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 3/200 (1%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           E ++ M+S L  +     A  V++ M R+G+      +  LM +  R   LR A ++   
Sbjct: 128 EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHL 187

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   GC+ ++   N+ ++     G ++ AL     M   GV PD  TY  L++GLC    
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--- 577
           +  A E+    + +     +    T M  LC+         LL+ + +D G     V   
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 578 ILLKSLADAREVEMAIEHIK 597
           +L+  LA     + A+E ++
Sbjct: 308 VLIHGLAKHGHADEALEFLR 327


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 188/426 (44%), Gaps = 55/426 (12%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           LSP+L+  V+   L     LAL  F WA  Q  F H+  +Y+++++SL   +Q   I S+
Sbjct: 92  LSPALIEEVLKK-LSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSL 150

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +  +K  K+ L    +  I     + +  ++A   F++++     +     N +L  L+ 
Sbjct: 151 VDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSK 209

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFI--WKFCENAKLGQVLSML--DEV-RKRENS 221
              + +A K+FD+M  +  E     + + +  W        GQ L++L  DEV R+ ++ 
Sbjct: 210 SRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGW--------GQELNLLRVDEVNREMKDE 261

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
                V+A  +II+  CK K+ EEA +  +E+  R CKP                     
Sbjct: 262 GFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKP--------------------- 300

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
                       +P    +   I GL  E+++ +A E  E   S  F ++    NAL+G+
Sbjct: 301 ------------SPHI--FCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346

Query: 341 VS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              S     A    + M  KG  P   T   +  +L +  +S E  EVY+ +S       
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PT 403

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + +Y +MV   C   RL  A  +  EMK KG+ P +  ++SL+ A C E+ L  A + ++
Sbjct: 404 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 463

Query: 460 QMFASG 465
           +M   G
Sbjct: 464 EMLDVG 469



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 188/434 (43%), Gaps = 23/434 (5%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           SV  QV  N  + D+      I  ++      K  ++ NE       + P +   +L  L
Sbjct: 52  SVETQVSANDASQDAER----ICKILTKFTDSKVETLLNEASVK---LSPALIEEVLKKL 104

Query: 165 ASDGYIDNALKMFD-EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           ++ G +  AL +F    + +G + +T  +   I    +  +   + S++D+++ ++  ++
Sbjct: 105 SNAGVL--ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK--LL 160

Query: 224 NGSVIAVLIIHGFCKGKRVEEA---FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
           +    A LI   + + ++V+EA   F  ++E   +    DF     + +      +V + 
Sbjct: 161 SKETFA-LISRRYARARKVKEAIGAFHKMEEFGFKMESSDF---NRMLDTLSKSRNVGDA 216

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + V  K +K    P    Y   + G   E  +    E+   +    F  D      +I +
Sbjct: 217 QKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINA 276

Query: 341 -VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
              +     AI FFN M ++   P+     +L   L    K ++ +E ++   ++ +  +
Sbjct: 277 HCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLE 336

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
             +YN +V   C S R+ +AY  + EM+ KG+ P+   Y+ ++    R    + A +++ 
Sbjct: 337 APTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQ 396

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M    C   + TY I++  F     ++ A++++  M  KGV P    ++SL+  LC E 
Sbjct: 397 TM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHEN 453

Query: 520 NLQAAFEVFNKSVN 533
            L  A E FN+ ++
Sbjct: 454 KLDEACEYFNEMLD 467



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 116/266 (43%), Gaps = 16/266 (6%)

Query: 307 IVERRICEAKELGEVIVSGK------FTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEK 359
           ++ RR   A+++ E I +        F ++    N ++ ++S S +   A   F+ M +K
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
              P + + + L +   +      + EV + +    +  D+ +Y ++++  C + +  EA
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
                EM+++   P    + SL+     E  L  A + +++  +SG      TYN L+  
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           +     +E A +    M  KGV P+A TY  +L  L +    + A+EV+        M  
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQ------TMSC 400

Query: 540 RSILSTFMISL---CRRGHFLVATKL 562
              +ST+ I +   C +    +A K+
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKI 426


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 166/380 (43%), Gaps = 5/380 (1%)

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G++  TI    F+   C   +  + + +L   R  E S +  ++    +I   C   R +
Sbjct: 154 GLKTGTIQATTFLKCLCHAKRTDEAVDVLLH-RMSELSCVPDAISYNTVIKSLCGDSRSQ 212

Query: 244 EAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           EA  ++  +      C PD +++  V   F   G V +   +  +  + GV P    Y  
Sbjct: 213 EALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNS 272

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKG 360
            +  L   R + +A+ +   +V      D    NA+I G   S   + +   F  M  KG
Sbjct: 273 IVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKG 332

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
            +P   T S+   +LCK  +S +  E+++ ++   +  D+ SY++++    T GR  +  
Sbjct: 333 LIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMN 392

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +   M  KG+  +    N L+ A  +  ++  A  ++ +M   G   N+ TY+ LIS F
Sbjct: 393 NLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAF 452

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
             +G +  A+  F  M+  G+ P+   Y SL+ G C   +L  A E  ++ ++  +    
Sbjct: 453 CRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPN 512

Query: 541 SI-LSTFMISLCRRGHFLVA 559
            +  S+ + SLC  G  + A
Sbjct: 513 IVFFSSIIHSLCIEGRVMDA 532



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/469 (20%), Positives = 200/469 (42%), Gaps = 43/469 (9%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+SI+ +L  +R ++  + VL+Q+    +  D   Y  II       + +++  +F   
Sbjct: 269 TYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFR-- 326

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   + + P+    +S ++ L   G   +A ++F  M+ +G     + + + +  +    
Sbjct: 327 KMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEG 386

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +   + ++   +   +  +++      ++I    K   ++EA  V  E++ +  +P+ + 
Sbjct: 387 RFADMNNLFHSMA--DKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVT 444

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +   F  MG + +      +   +G+ P T  Y   I G  +   + +AKE      
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKE------ 498

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG-RVPTLSTLSNLSKNLCKRNKSD 382
                                       F + M+ KG   P +   S++  +LC   +  
Sbjct: 499 ----------------------------FISEMMSKGLHRPNIVFFSSIIHSLCIEGRVM 530

Query: 383 ELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +  +V+  V+   D  T + ++N ++   C  G++ +A+GV+  M   G++PDV   N+L
Sbjct: 531 DAQDVFNLVIHIGDRPT-IVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C+   +     L+ +M          TYNI++      G    A ++FH M++ G 
Sbjct: 590 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGT 649

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           A D  TY  LL+GLC+      A  +F+K    D     +IL+T + +L
Sbjct: 650 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINAL 698



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 373 KNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG- 430
           K LC   ++DE V+V    +S      D  SYN ++  LC   R +EA  ++Q M ++G 
Sbjct: 167 KCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGG 226

Query: 431 -LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
              PDV  +N+++    ++  +  A  L+++M   G   ++ TYN ++    +   ++ A
Sbjct: 227 RCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKA 286

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             +   M++KGV PD  TY +++ G     + + + ++F K  +  ++      S+FM S
Sbjct: 287 EFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSS 346

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSD---SHVILLKSLA 584
           LC+ G    A ++ + +++  GH     S+ ILL   A
Sbjct: 347 LCKHGRSKDAEEIFQYMTTK-GHMPDIVSYSILLHGYA 383


>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/488 (21%), Positives = 216/488 (44%), Gaps = 27/488 (5%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D S++  I+  L + +  ++   V + +    E+   +I NS+L VL  +  ID A + +
Sbjct: 10  DESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKED-IDLAREFY 68

Query: 178 -DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
             +M   GV      FG+ +   C   ++G    +L  ++ R  +    +VI   +IH  
Sbjct: 69  RKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKT--PNTVIYNTMIHAL 126

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK  +V  A  +++E+     +P  + + ++   +    ++ +  V+L+K   +G  P  
Sbjct: 127 CKNGKVGRARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDV 182

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNF 355
               + +  L    R+ E  E+ E + S    +D    N LI     +   +        
Sbjct: 183 VTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKD 242

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M  KG +P + T + L+   C     D  ++++  +  +    +  +Y+ ++  LC+ GR
Sbjct: 243 MEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGR 302

Query: 416 LREAYGVIQEMK--RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM---FASGCSGNL 470
           + + + +++ M+  R G    +S YNS++    +++    A +   +M   F      +L
Sbjct: 303 MEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSL 362

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +     I  F   G I  A R++  M+++G  P    Y  L+ G CQ+ N++ AFE+ N+
Sbjct: 363 R-----ILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINE 417

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLAD 585
            V+H         +  + + C +G    A KL+     RG   D+G   S+  ++ +L +
Sbjct: 418 MVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMG---SYSPMVDALCN 474

Query: 586 AREVEMAI 593
             + + A+
Sbjct: 475 KGDFQKAV 482



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 196/469 (41%), Gaps = 29/469 (6%)

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
           K++ +N ++ D   +  ++  L        AF +   +K   +     I N+++  L  +
Sbjct: 70  KKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKN 129

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +  A  + +EM    VE S + F V I  +C+   L Q L +L+  +      +   V
Sbjct: 130 GKVGRARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLE--KSFSMGFVPDVV 183

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
            A  ++   CK  RV E  +VL+ +       D +AY  + + F ++G       VLK  
Sbjct: 184 TATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDM 243

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVI----------VSGKFTIDDDVLNAL 337
              G  P  + Y       I+    C++  L   I          ++  F   D ++  L
Sbjct: 244 EIKGCLPNVDTYN------ILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGL 297

Query: 338 IGSVSSIDPRSAIVFFNFMIEK--GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
               S             M E   G    +S  +++   L K+N+ +E +E   +     
Sbjct: 298 ---CSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEF--LTKMEK 352

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
            F      ++ +   C  G + +A  V  +M ++G  P V  Y  L+   C++  +R A 
Sbjct: 353 LFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAF 412

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L ++M   G      T+N LIS F   G++  AL+L  +M+ +G  PD  +Y+ +++ L
Sbjct: 413 ELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDAL 472

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           C + + Q A  +F + V  D++   S  ++ ++ L +   +L    L  
Sbjct: 473 CNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQETVWLEGDNLFH 521


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/539 (21%), Positives = 232/539 (43%), Gaps = 79/539 (14%)

Query: 67  ALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           AL      S +P     P  +SY +++++L   R+      +L+ ++   +  D   Y  
Sbjct: 75  ALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYG- 133

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
              +LI+G                       +C+      A+D  +D A+++ +EM   G
Sbjct: 134 ---TLIRG-----------------------LCD------AAD--VDTAVELLNEMCESG 159

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           +E + + +   +  +C+  +   V  + +E+  R   +    V+   +I   C+  +V++
Sbjct: 160 IEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGR--GIEPDVVMYTALIDSLCRHGKVKK 217

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A +V+D +  R  +P+ + Y ++       GSV E   + K   + GV P    Y   I 
Sbjct: 218 AARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLIT 277

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSID-PRSAIVFFNFMIEKGR 361
           GL     + EA  L E ++ G+  +  D++  N++I  +  I   R A+     M E G 
Sbjct: 278 GLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGC 337

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
              L   + L   L + +K  + +E+   ++++    D  +Y+++++  C   ++  A  
Sbjct: 338 RCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAES 397

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM----------FASGCSGNLK 471
            + EM+ +G++P+   Y  L++A C + ++  A+ L+++M          +++   G  K
Sbjct: 398 YLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFK 457

Query: 472 ------------------------TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
                                   TY+I I+ F++ G++  A R+   M   G  PD   
Sbjct: 458 SGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAV 517

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + SL++G   + + +   E+  +    DV L   I+ST + SL   G  +   KLL+ L
Sbjct: 518 FDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSL---GASIEGQKLLQSL 573



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 5/315 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
           V+  + +L   P    Y   +  L  +RR  +A  L   +       D      LI G  
Sbjct: 81  VMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLC 140

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
            + D  +A+   N M E G  P +   S L    CK  + + + +V++ +S      D+ 
Sbjct: 141 DAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVV 200

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y  ++  LC  G++++A  V+  M  +GL+P+V  YN L+ + C+E  +R A  L   M
Sbjct: 201 MYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNM 260

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML--EKGVAPDATTYTSLLEGLCQET 519
              G   ++ TYN LI+  S V E++ A+ L   M+  E  V PD  T+ S++ GLC+  
Sbjct: 261 SEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG 320

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS--HV 577
            ++ A +V      +         +  +  L R      A +L+  ++S     DS  + 
Sbjct: 321 WMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYS 380

Query: 578 ILLKSLADAREVEMA 592
           IL+      R+VE A
Sbjct: 381 ILINGFCKMRQVERA 395



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 120/272 (44%), Gaps = 26/272 (9%)

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           S   PR A  +   ++ +GR    + L+   + L        L E   +LSA     D  
Sbjct: 5   SRTPPRRAAPYLAVLLRRGRGEAAARLNRHLRLL-------PLPESPALLSALPSVRDAV 57

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMK---RKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           SYN +++ LC  G L  A  +++ M    R    P+   Y +LM A C +     A  L 
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLL 117

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             M   G   ++ TY  LI    +  +++ A+ L + M E G+ P+   Y+ LL G C+ 
Sbjct: 118 RSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKT 177

Query: 519 TNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
              ++  +VF     + +  DV++  +++     SLCR G    A +++     RGL  +
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALID----SLCRHGKVKKAARVMDMMTERGLEPN 233

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
           +    ++ +L+ S+     V  A++  K + E
Sbjct: 234 V---VTYNVLINSMCKEGSVREALDLRKNMSE 262


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 11/371 (2%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232
           AL    +M   G E S + FG  +  FC   ++ + +S++D++           VI   I
Sbjct: 127 ALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYE--PNVVIYNTI 184

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I   C+ ++V+ A  VL+ +     +PD I Y  +       G       +L    ++G+
Sbjct: 185 IDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGI 244

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSV---SSIDPR 347
            P    +   I     E ++ EAK+  + ++  + ++D +++  N+LI  +     +D  
Sbjct: 245 HPDVITFSAMIDVFGKEGQLLEAKKQYDEMI--QRSVDPNIVTYNSLINGLCIHGLLDEA 302

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
             ++  NFM+ KG  P   T + L    CK  + D+ +++  V+S +    D  +YN + 
Sbjct: 303 KKVL--NFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLY 360

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C +G+   A  V+  M   G+ PD+  +N L++  C    +  A    + +  S   
Sbjct: 361 QGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETV 420

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             + TYNI+I    +  ++E A  LF ++  KGV+PD  TYT+++ GL ++     A E+
Sbjct: 421 VGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHEL 480

Query: 528 FNKSVNHDVML 538
           + K    D ++
Sbjct: 481 YRKMKKDDGLM 491



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 15/318 (4%)

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS- 342
           L K  KLG  P    +   + G     RI EA  L + IV   +  +  + N +I S+  
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 190

Query: 343 --SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              +D  +A+   N M + G  P + T ++L   L    K      +   +       D+
Sbjct: 191 NRQVD--TALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDV 248

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +++ M+      G+L EA     EM ++ +DP++  YNSL+   C   LL  AKK+ + 
Sbjct: 249 ITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNF 308

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M + G   N  TYN L++ + +   ++ A+++   M   GV  D  TY +L +G CQ   
Sbjct: 309 MVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQ 368

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--- 577
             AA +V  + V+  V+      +  +  LC  G    A   L     DL  S++ V   
Sbjct: 369 FNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLE----DLQKSETVVGII 424

Query: 578 ---ILLKSLADAREVEMA 592
              I++K +  A +VE A
Sbjct: 425 TYNIIIKGMCKANKVEDA 442



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 89/191 (46%)

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           G F+   D    L   + SI    A+  F  M E   +P++   S L   + K  K + +
Sbjct: 33  GAFSGGSDYRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAV 92

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           + +++ +       D+ S++ ++   C   RL  A   + +M + G +P +  + SL+  
Sbjct: 93  ISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNG 152

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C  + ++ A  L DQ+   G   N+  YN +I    E  +++ AL + ++M + G+ PD
Sbjct: 153 FCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPD 212

Query: 505 ATTYTSLLEGL 515
             TY SL+  L
Sbjct: 213 VITYNSLITRL 223



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+        +D+A+K+   MSH GV+  T  +      +C+  +      +L   R 
Sbjct: 322 NTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVL--ARM 379

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
               ++       +++ G C+  ++E+A   L++L+  E     I Y I+ +       V
Sbjct: 380 VSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKV 439

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
            +   +       GV+P    Y   ++GL  +R   EA EL
Sbjct: 440 EDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHEL 480


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 173/392 (44%), Gaps = 5/392 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+      G ++ A   F  M   GV  + + F  F+  FC+   + + + +  ++R 
Sbjct: 262 NALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRV 321

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGS 276
           R   M         +I G CK  R+++A  +LDE+ +R+  P + + Y ++ +       
Sbjct: 322 R--GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERK 378

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V E E VL+   K GV      Y   I G  + +   +A  L   + +    +D  +  A
Sbjct: 379 VAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGA 438

Query: 337 LIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI  + ++     A      M E G  P     + +     K  K  E + + + +  + 
Sbjct: 439 LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           +  ++ +Y  ++  LC +G + EA     +M+  GLDP+V  Y +L++  C+   L  A 
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+++M   G S +   Y  L+  + + G +  A  L   M++ G+  D   YT  + G 
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
           C    +  A EVF++ + H +   R++ +  +
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 202/458 (44%), Gaps = 49/458 (10%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMF 177
           +  +I  L +     +A S+F+ +K    ++G  P++   NSL+      G +D   ++ 
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMK----EMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
           +EM   G +   + +   I  FC+  ++         + KRE  M N    +  +   FC
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM-KREGVMANVVTFSTFV-DAFC 304

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   V EA K+  ++R+R    +   Y  + +     G + +  V+L +  + GV     
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
            Y   + GL  ER++ EA+++  ++       ++ +   LI               +FM 
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHG-------------HFM- 410

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            K     L  LS +      +NK  EL              D+  Y  ++  LC   +L 
Sbjct: 411 NKNSEKALGLLSEM------KNKGLEL--------------DISLYGALIQGLCNVHKLD 450

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA  ++ +M   GL+P+   Y ++M+AC +   +  A  +  ++  SG   N+ TY  LI
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
               + G I+ A+  F+ M + G+ P+   YT+L++GLC+   L  A ++FN+ V+  + 
Sbjct: 511 DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMS 570

Query: 538 LARSILSTFMISLCRRGH----FLVATKLL-RGLSSDL 570
           L + + +  +    ++G+    F +  K++  GL  DL
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 180/419 (42%), Gaps = 12/419 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN +L  LA D       ++F+++    V      F + I   C+  +L +  S+    R
Sbjct: 160 CNHILLRLARDRSGRLVRRLFEQLPAPNV----FTFNIVIDFLCKEGELAEARSLFS--R 213

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            +E   +   V    +I G+ K   ++E  ++++E+R   CK D + Y  +   F   G 
Sbjct: 214 MKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR 273

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +          ++ GV      +  F+     E  + EA +L   +      +++     
Sbjct: 274 METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTC 333

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G+  +     AIV  + M+ +G    + T + L   LCK  K  E  +V +++    
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +   Y  ++     +    +A G++ EMK KGL+ D+S Y +L++  C    L  AK
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L  +M  SG   N   Y  ++    + G++  A+ +   +L+ G  P+  TY +L++GL
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
           C+  ++  A   FNK  +  +       +  +  LC+ G    A +L      +G+S D
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 8/270 (2%)

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
           R+L V P T      +L L  +R     + L E + +      + V++ L       + R
Sbjct: 149 RELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEAR 208

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           S    F+ M E G +P + T ++L     K  + DE+ ++ + +  +    D+ +YN ++
Sbjct: 209 S---LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI 265

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +  C  GR+  AYG    MKR+G+  +V  +++ ++A C+E L+R A KL+ QM   G +
Sbjct: 266 NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMA 325

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  LI    + G ++ A+ L   M+ +GV  +  TYT L++GLC+E  +  A +V
Sbjct: 326 LNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDV 385

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFL 557
             + +    + A  +L T +I     GHF+
Sbjct: 386 L-RMMEKAGVRANELLYTTLI----HGHFM 410



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 179/411 (43%), Gaps = 20/411 (4%)

Query: 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169
           V  N +T  + V  F    L++     +A  +F +++     +       L+      G 
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVR-----EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ---VLSMLDEVRKRENSMINGS 226
           +D+A+ + DEM  +GV  + + + V +   C+  K+ +   VL M+++   R N ++  +
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                +IHG    K  E+A  +L E++ +  + D   Y  + +    +  + E + +L K
Sbjct: 404 -----LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SS 343
             + G+ P    Y   +       ++ EA  + + I+   F  +     ALI  +    S
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           ID   AI  FN M + G  P +   + L   LCK    +E V+++  +       D   Y
Sbjct: 519 ID--EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVY 576

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
             ++      G L +A+ +  +M   GL  D+  Y   +   C  +++  A++++ +M  
Sbjct: 577 TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIG 636

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            G + +   YN LISK+ ++G +E A+ L   M  + V P  T   +  +G
Sbjct: 637 HGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM--ERVLPSCTDSDTATDG 685



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 131/345 (37%), Gaps = 38/345 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++  L   R++   + VL+ ++   +  +  +Y  +I      KN++KA      
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA------ 417

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
                                        L +  EM ++G+E     +G  I   C   K
Sbjct: 418 -----------------------------LGLLSEMKNKGLELDISLYGALIQGLCNVHK 448

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L +  S+L   +  E+ +    +I   ++    K  +V EA  +L ++     +P+ I Y
Sbjct: 449 LDEAKSLL--TKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITY 506

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             + +     GS+ E      K R LG+ P    Y   + GL     + EA +L   +V 
Sbjct: 507 CALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVH 566

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
              ++D  V  AL+ G +   +   A      MI+ G    L   +      C  N   E
Sbjct: 567 KGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPE 626

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
             EV+  +  +    D   YN ++S     G L EA  +  EM+R
Sbjct: 627 AREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/537 (22%), Positives = 227/537 (42%), Gaps = 24/537 (4%)

Query: 75  SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134
           +Q  N T + ++Y  ++ +   +  I+  + VL Q++   +  +   +  II  L++   
Sbjct: 388 AQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGC 447

Query: 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFST 189
             KA     ++K +   I P +      +   DG+      + AL ++ +M H GVE + 
Sbjct: 448 LGKAADYMRKMKDS--GIAPNVVTYGTLI---DGFFKFQGQEAALDVYRDMLHEGVEANN 502

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
                 +    +N  +    ++  ++ +R   ++   V    ++ G  K   +  AFKV 
Sbjct: 503 FVVDSLVNGLRKNGNIEGAEALFKDMDER--GLLLDHVNYTTLMDGLFKTGNMPAAFKVG 560

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
            EL  +   PD + Y +       +G   E +  LK+ R  G+ P    Y   I     E
Sbjct: 561 QELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCRE 620

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368
            +  +A +L + +       +      L+ G + +   + A    N M   G  PT  T 
Sbjct: 621 GKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTH 680

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
             + +      + D ++E+++++       D+  YN +V  LC  G  R A  V+ EM  
Sbjct: 681 QRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLT 740

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           +G+ PD   +N+L+   C+   L  A  ++ QM   G S N+ T+N L+      G I  
Sbjct: 741 RGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGE 800

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
           A  +  +M + G+ P+  TY  L+ G  +++N   A  ++ + V+   +   S  ++ M 
Sbjct: 801 ADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMS 860

Query: 549 SLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAR---EVEMAIEHIK 597
              + G    A +L      RG+   L  S ++ ILL   +  R   EV + ++ +K
Sbjct: 861 DFAKAGMMNQAKELFSEMKRRGV---LHTSSTYDILLNGWSKLRNGIEVRILLKDMK 914



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 177/438 (40%), Gaps = 76/438 (17%)

Query: 167 DGY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           DGY     +  AL + + M+ +GV    +G+   +  F  +      L +++  R + + 
Sbjct: 195 DGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVE--RMKADG 252

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +    V    +I  +CKGK ++EAF + + +      PD +    + +     G   E  
Sbjct: 253 VEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAY 312

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            + ++  K+GVAP    Y   I  L   RR  E+  LG                 L+G  
Sbjct: 313 ALFREMDKIGVAPNHVTYCTLIDSLAKARRGSES--LG-----------------LLGE- 352

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                         M+ +G V  L   + L   L K  K +E  +V +   +++   +  
Sbjct: 353 --------------MVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFV 398

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y V+V   C +G +  A  V+ +M+ K + P+V  ++S++    +   L  A     +M
Sbjct: 399 TYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKM 458

Query: 462 FASGCSGNLKTYNILISKFSEV-----------------------------------GEI 486
             SG + N+ TY  LI  F +                                    G I
Sbjct: 459 KDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNI 518

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           EGA  LF +M E+G+  D   YT+L++GL +  N+ AAF+V  + +  ++     + + F
Sbjct: 519 EGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVF 578

Query: 547 MISLCRRGHFLVATKLLR 564
           +  LC  G F  A   L+
Sbjct: 579 INCLCTLGKFSEAKSFLK 596



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 150/374 (40%), Gaps = 36/374 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N  LA L+  G+   A  +  EM  RGV +  +     +   C    +G+  + L E+  
Sbjct: 119 NIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEA-AALAEMLV 177

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R   +    V+    +I G+CK + +  A  V++ +  +    D + Y  +   F   G 
Sbjct: 178 RGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGD 237

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                 V+++ +  GV P    Y   I         C+ K + E                
Sbjct: 238 ADAALEVVERMKADGVEPNVVTYTALI------GEYCKGKGMDE---------------- 275

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                       A   +  M+  G +P + TLS L   LC+  +  E   +++ +     
Sbjct: 276 ------------AFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGV 323

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             +  +Y  ++  L  + R  E+ G++ EM  +G+  D+  Y +LM+   +E  +  AK 
Sbjct: 324 APNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKD 383

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +     +   + N  TY +L+      G I+GA ++   M EK V P+  T++S++ GL 
Sbjct: 384 VLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLV 443

Query: 517 QETNLQAAFEVFNK 530
           +   L  A +   K
Sbjct: 444 KRGCLGKAADYMRK 457



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 32/310 (10%)

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D ++Y I        G       VL +  K GV+         ++GL     + EA  L 
Sbjct: 114 DTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALA 173

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           E++V G+              +  +D    +V +N +I+                 CK  
Sbjct: 174 EMLVRGR-------------GIDGLD----VVGWNALID---------------GYCKVQ 201

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
                + V + ++      D+  YN +V+    SG    A  V++ MK  G++P+V  Y 
Sbjct: 202 DMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYT 261

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L+   C+   +  A  L++ M  SG   ++ T + L+      G+   A  LF  M + 
Sbjct: 262 ALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKI 321

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
           GVAP+  TY +L++ L +      +  +  + V+  V++   + +  M  L + G    A
Sbjct: 322 GVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEA 381

Query: 560 TKLLRGLSSD 569
             +LR   SD
Sbjct: 382 KDVLRHAQSD 391


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 192/417 (46%), Gaps = 18/417 (4%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-- 217
           LL+ +A     D  + +F  M   G+      + + I   C  ++    LS++ ++ K  
Sbjct: 75  LLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFG 134

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++  S +    I+GFC+G RV  A  ++ ++    CK D + Y  + + F   G V
Sbjct: 135 YEPDVVTVSSL----INGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLV 190

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
               V+  +  + GV   T  Y   + GL    R  +A  L   +V      +     AL
Sbjct: 191 NNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTAL 250

Query: 338 IGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I + V       A  F+  MI +   P + T +++   LC   + DE  ++  ++     
Sbjct: 251 INAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGC 310

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           F D+ +YN +++  C + R+ E   +++EM ++GL  D   +N++++   +      A++
Sbjct: 311 FPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQE 370

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++ +M   G   N++TY+IL+        +E AL LF +M +  +  D TTY  ++ G+C
Sbjct: 371 IFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMC 427

Query: 517 QETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
              N++ A+++F     K +  DV+   +++S F    CR+  +  A  L R +  D
Sbjct: 428 MIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGF----CRKRLWDKADFLYRKMQED 480



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 173/392 (44%), Gaps = 20/392 (5%)

Query: 82  HSPLSYHSILKSLS-LSRQINAIDSVLKQVKV----NKITLDSSVYRFIIPSLIQGKNTQ 136
           H   +Y+ ++  L   SR + A+  V K +K     + +T+ S     +I    QG    
Sbjct: 102 HDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSS-----LINGFCQGNRVF 156

Query: 137 KAFSVFNEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            A  + ++++   C+ +   I N+++      G ++NAL +F  M   GV   T+ +   
Sbjct: 157 GAVDLVSKMEEMRCK-LDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSL 215

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255
           +   C + +      ++ ++  R+  ++   +    +I+ F +  +  EA K  +E+ IR
Sbjct: 216 VTGLCCSGRRSDAARLMRDMVMRD--IVPNVITFTALINAFVREGKFLEAKKFYEEM-IR 272

Query: 256 EC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
            C  PD   Y  +     + G V E + +L      G  P    Y   I G    +R+ E
Sbjct: 273 RCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDE 332

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
             +L   +      +D    N +I G   +  P +A   F+ M   G  P + T S L  
Sbjct: 333 GTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLY 389

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LC   + ++ + +++ +  ++   D+ +YN+++  +C  G + +A+ +   +  KGL+P
Sbjct: 390 GLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEP 449

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           DV  Y +++   CR+ L   A  L+ +M   G
Sbjct: 450 DVVTYTTMISGFCRKRLWDKADFLYRKMQEDG 481



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%)

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
           S++   AI  F  MI+   +P++   S L  N+ K    D ++ ++  +       D+ +
Sbjct: 47  SMNLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYT 106

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN++++ LC   R   A  V+ +M + G +PDV   +SL+   C+ + +  A  L  +M 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKME 166

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              C  ++  YN +I  F + G +  AL LF  M   GV  D  TY SL+ GLC      
Sbjct: 167 EMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRS 226

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
            A  +    V  D++      +  + +  R G FL A K 
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKF 266


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 208/478 (43%), Gaps = 10/478 (2%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           +L  L  +R+ + +  +++ ++ ++  LD+ ++  +I    +    +KA        F  
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTL--AAFTK 58

Query: 150 EDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
           E   P     +S++ V    G + N L M+ +M           F + I    +  ++ +
Sbjct: 59  EGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEE 118

Query: 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
             ++  ++ K   S         ++I       R++   K+ + +  + C+P+   Y  V
Sbjct: 119 ACNVFGDMFKLNVS--PDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSV 176

Query: 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327
              F   G V E   + ++  + G+ P    Y   I       ++  A +   V  S  F
Sbjct: 177 MHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDF--VGKSRSF 234

Query: 328 TIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
           T ++   N+L+ S+    D +  +  F  M  KG V    T + L + L    + +++ +
Sbjct: 235 T-NEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQ 293

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           +Y  +  ND   D+ + N ++  L  +GR+  A+ + Q+MK KGL+ D   YN L+    
Sbjct: 294 LYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLG 353

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           R   L  A  L  +M  +GC+ N+ TYN LIS + +   +  A RLF  M E+GVAP+  
Sbjct: 354 RAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVV 413

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           +Y+SL+EG  +     AA  +F +             +  +  L R G F  A + LR
Sbjct: 414 SYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLR 471



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           ++  KF  D    N LI S++  D    A   F  M +    P + T + L ++L    +
Sbjct: 91  MLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGR 150

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D ++++++ ++A     ++ +Y+ ++    ++GR+ EA  + Q+M +KGL PD   YN 
Sbjct: 151 IDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNI 210

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L++A  +   L  A   +D +  S    N  TYN L+S     G+I+G + LF  M  KG
Sbjct: 211 LIDAFGKTGQLERA---FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKG 267

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           +  +  TY  L+E L     ++  ++++ + V++D+      ++  +  L + G    A 
Sbjct: 268 LVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAF 327

Query: 561 KL-----LRGLSSDLGHSDSHVILLKSLADAREVEMA 592
           +L      +GL++D   + ++ IL+  L  A +++ A
Sbjct: 328 ELFQDMKFKGLNAD---TVTYNILINGLGRAGKLDAA 361



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 163/397 (41%), Gaps = 12/397 (3%)

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGPEICNS--LLAVL 164
           KQ+   K   D + +  +I SL +    ++A +VF ++ K N   + P++     L+  L
Sbjct: 89  KQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLN---VSPDVYTYTILIRSL 145

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
            + G ID  +K+F+ M+ +G + +   +   +  F    ++ +   +  ++ ++   +  
Sbjct: 146 GTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQK--GLQP 203

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
            +V   ++I  F K  ++E AF  + + R      + + Y  +       G +     + 
Sbjct: 204 DAVTYNILIDAFGKTGQLERAFDFVGKSR---SFTNEVTYNSLLSSLGRKGDIQGLMELF 260

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            + +  G+      Y   I  L    R+ +  +L   +V      D   +N ++  +S  
Sbjct: 261 GQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKA 320

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
               +A   F  M  KG      T + L   L +  K D    +   +  N    ++ +Y
Sbjct: 321 GRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITY 380

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++S       L  A  +  EMK +G+ P+V  Y+SL+E   +      A  L+ +M A
Sbjct: 381 NTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKA 440

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
            GC  N  TYN+LI      G    A+     M + G
Sbjct: 441 EGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 22/281 (7%)

Query: 51  LVARVINPYLLTHHSLALGF---------FNWASQQPNFTHSPLSYHSILKSLSLSRQIN 101
           +V + + P  +T++ L   F         F++  +  +FT+  ++Y+S+L SL     I 
Sbjct: 196 MVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNE-VTYNSLLSSLGRKGDIQ 254

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF-----NEVKFNCEDIGPEI 156
            +  +  Q+K   +  +   Y  +I  L      +  + ++     N++K++   I    
Sbjct: 255 GLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTI---- 310

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            N++L  L+  G ++ A ++F +M  +G+   T+ + + I       KL    ++L E+ 
Sbjct: 311 -NNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEM- 368

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
             EN      +    +I  + K   +  A ++  E++ R   P+ ++Y  + E F   G 
Sbjct: 369 -EENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGR 427

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
                 + ++ +  G  P    Y   I  LI   R   A E
Sbjct: 428 TDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAME 468


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/549 (22%), Positives = 228/549 (41%), Gaps = 23/549 (4%)

Query: 12  RISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL----- 66
           R+   ++ A +R   A     +L +    LG   S  PS+   +++  LL  H L     
Sbjct: 96  RLLSRLLGAGHRPHLAASLVDILHRAALALGPHRSALPSVFDTLLS--LLADHGLLDDAV 153

Query: 67  -ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
            AL         PN      + + IL  L+ +RQ   +  + + +    +      +  +
Sbjct: 154 RALARVRQLRVPPNTR----TCNHILLRLARNRQGGLVRRLFEHLPAPNVF----TFNIV 205

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHR 183
           I  L +     +A ++F  V+       P++   NSL+      G ++    +  EM   
Sbjct: 206 IDFLCKQGELVEARALF--VRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKS 263

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
           G     + +   I  F +   + +  S   E+ KR   M N   ++  +   FCK   V 
Sbjct: 264 GCAADVVTYNALINCFSKFGWIEKAYSYFGEM-KRLGVMANVVTLSTFV-DAFCKEGLVR 321

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           EA K+  ++R+R   P+   Y  + +     G + +  V+L +    G+ P    Y   +
Sbjct: 322 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 381

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRV 362
            GL  E ++  A ++  ++       ++ +   LI G   + +   A+   N M  KG  
Sbjct: 382 DGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGME 441

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
             +S    L   LCK  K DE   +   +       +   Y  ++     +G+  EA  +
Sbjct: 442 LDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVAL 501

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + ++   GL P+V  Y +L++  C+   +  A   +D+M   G   N++ Y  LI  F +
Sbjct: 502 LHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCK 561

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           +G +  A+ L + M++KG++ D   YTSL++G  ++ +LQ AF +  K +   + L    
Sbjct: 562 IGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYC 621

Query: 543 LSTFMISLC 551
            + F+   C
Sbjct: 622 YTCFISGFC 630



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 3/377 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+   +  G+I+ A   F EM   GV  + +    F+  FC+   + + + +  ++R 
Sbjct: 273 NALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRV 332

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   M+        ++ G CK  R+++A  +LDE+  +   P+ + Y ++ +     G V
Sbjct: 333 R--GMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 390

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
              + VL    + GV      Y   I G  + +    A +L   + +    +D  +   L
Sbjct: 391 AVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTL 450

Query: 338 IGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I  +  +     A    + M + G  P     + +     K  K  E V +   +  +  
Sbjct: 451 IWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGL 510

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +Y  ++  LC +G + EA     +M+  GLDP+V  Y +L++  C+   L  A  
Sbjct: 511 QPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVH 570

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L ++M   G S +   Y  LI    + G+++GA  L   M+E G+  D   YT  + G C
Sbjct: 571 LMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFC 630

Query: 517 QETNLQAAFEVFNKSVN 533
               +Q A  V ++ + 
Sbjct: 631 NMNMMQEARGVLSEMIG 647



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 42/240 (17%)

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           RVP  +   N       RN+   LV  +++ L A + FT    +N+++ FLC  G L EA
Sbjct: 163 RVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNVFT----FNIVIDFLCKQGELVEA 218

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +   MK  G  PDV  YNSL++   +   L   + L  +M  SGC+ ++ TYN LI+ 
Sbjct: 219 RALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINC 278

Query: 480 FSEVGEIEG-----------------------------------ALRLFHNMLEKGVAPD 504
           FS+ G IE                                    A++LF  M  +G+ P+
Sbjct: 279 FSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPN 338

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLL 563
             TYTSL++G C+   L  A  + ++ V H  ++   +  T M+  LC+ G   VA  +L
Sbjct: 339 EFTYTSLVDGTCKAGRLDDAIVLLDEMV-HQGLVPNVVTYTVMVDGLCKEGKVAVADDVL 397



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 8/274 (2%)

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L + R+L V P T      +L L   R+    + L E + +      + V++ L      
Sbjct: 156 LARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGEL 215

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           ++ R+  V    M   G  P + T ++L     K  + +E+  +   +  +    D+ +Y
Sbjct: 216 VEARALFVRMKAM---GCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTY 272

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N +++     G + +AY    EMKR G+  +V   ++ ++A C+E L+R A KL+ QM  
Sbjct: 273 NALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRV 332

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   N  TY  L+    + G ++ A+ L   M+ +G+ P+  TYT +++GLC+E  +  
Sbjct: 333 RGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAV 392

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557
           A +V +      V  A  +L T +I     GHF+
Sbjct: 393 ADDVLSLMERAGVK-ANELLYTTLI----HGHFM 421


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 189/478 (39%), Gaps = 81/478 (16%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+    SD   + AL++ ++M   G     + +   +   C+ ++L QV  +L  ++ 
Sbjct: 215 NILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLL--LQM 272

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           + + +        +++HG+CK K ++EA                      AE  +LM   
Sbjct: 273 KNSGLFPNRNTYNILVHGYCKLKWLKEA----------------------AEVIELMTGK 310

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                        G+ P    Y   + GL  E +I EA  L + + S K   D    N L
Sbjct: 311 -------------GMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTL 357

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I G        +A      M  +G      T + + K  C   K DE   V   +  + +
Sbjct: 358 IDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGF 417

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK- 455
             D  +YN M++  C +G++ EAY ++ EM RKGL  D    N+L+   C E  L  A  
Sbjct: 418 SPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYT 477

Query: 456 ----------------------------------KLWDQMFASGCSGNLKTYNILISKFS 481
                                             KLW++M  +G    + TYN +I    
Sbjct: 478 LTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLC 537

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G+ + A+   + +LEKG+ PD +T   ++ G C E  ++ AF+  NK V H +     
Sbjct: 538 LSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIF 597

Query: 542 ILSTFMISLCRRGHF-----LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIE 594
             +  +  LCR G       L  T + +G   D   + ++ I++ S    R +E A +
Sbjct: 598 TCNILLRGLCREGMLEKGLTLFNTWISKGKPMD---TVTYNIIISSFCKERRLEDAFD 652



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/494 (20%), Positives = 215/494 (43%), Gaps = 18/494 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+++L +L    Q+  +  +L Q+K + +  + + Y  ++    + K  ++A  V   
Sbjct: 247 VTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIEL 306

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    + + P++   N+++  L  +G ID A+++ D+M    +    + +   I    E+
Sbjct: 307 M--TGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEH 364

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
                   +++E++ R   +    V   ++I  FC   +++EA  V+ ++      PD  
Sbjct: 365 RGSDAAFKLVEEMKAR--GVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCF 422

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   +   G + E   ++ +  + G+   T      +  + +E+++ +A  L    
Sbjct: 423 TYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKA 482

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
               + +D+     LI G         A+  +  M E G V T+ T + + + LC   K+
Sbjct: 483 RKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKT 542

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D+ V+    L       D  + N+++   C  G + +A+    +M    L PD+   N L
Sbjct: 543 DQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNIL 602

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   CRE +L     L++   + G   +  TYNI+IS F +   +E A  L   M  K +
Sbjct: 603 LRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNL 662

Query: 502 APDATTYTSLLEGLCQETNLQAA-----------FEVFNKSVNHDVMLARSILSTFMISL 550
            PD  TY +++ GL +    + A            +V  +  + ++  +  + S  + SL
Sbjct: 663 EPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSL 722

Query: 551 CRRGHFLVATKLLR 564
           C +G +  A KL +
Sbjct: 723 CTQGKYKDAMKLFQ 736



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 8/279 (2%)

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDD 332
           VF REV  +   KLGV P  N +   I G   +    EA     ++GE          + 
Sbjct: 193 VFSREV-FQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNT 251

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           VL AL         R  ++    M   G  P  +T + L    CK     E  EV ++++
Sbjct: 252 VLTALCKRSQLTQVRDLLLQ---MKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMT 308

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +YN MV  LC  G++ EA  +  +M+   L PDV  YN+L++ C       
Sbjct: 309 GKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSD 368

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A KL ++M A G   N  T+NI+I  F   G+I+ A  +   M+E G +PD  TY +++
Sbjct: 369 AAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMI 428

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
            G C+   +  A+++ ++     + L    L+T + ++C
Sbjct: 429 NGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMC 467



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/448 (21%), Positives = 198/448 (44%), Gaps = 26/448 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+++++ L    +I+    +  +++  K+  D   Y  +I    + + +  AF +  E+
Sbjct: 318 TYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEM 377

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K           N ++    ++G ID A  +  +M   G       +   I  +C+  K+
Sbjct: 378 KARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKM 437

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +   M+DE+ ++   +   ++  +L  H  C  K++++A+ +  + R R    D + Y 
Sbjct: 438 AEAYKMMDEMGRKGLKLDTFTLNTLL--HTMCLEKQLDDAYTLTMKARKRGYILDEVTYG 495

Query: 266 IVAEEFKLMGSVFEREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEA-KELG 319
            +     +MG   + +      + ++ ++ G+      Y   I GL +  +  +A  +L 
Sbjct: 496 TL-----IMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLN 550

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E++  G    D+   N +I G         A  F N M+E    P + T + L + LC+ 
Sbjct: 551 ELLEKG-LVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCRE 609

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
              ++ + ++    +     D  +YN+++S  C   RL +A+ ++ EM+ K L+PD   Y
Sbjct: 610 GMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTY 669

Query: 439 NSLMEACCREDLLRPAKKL-------WDQMFASGCSGNLKTYNIL----ISKFSEVGEIE 487
           N+++    +      A+KL         Q+     S  L T +++    IS     G+ +
Sbjct: 670 NAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYK 729

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGL 515
            A++LF    +KGV+ +  TY  L++GL
Sbjct: 730 DAMKLFQQAEQKGVSLNKYTYIKLMDGL 757



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 328 TIDDDVLN-ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV- 385
           TI   +L+ +L   V S  P      FN M      P L T + L   L + N S  LV 
Sbjct: 135 TIPKPLLDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVF 194

Query: 386 --EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             EV++         ++ ++N+++   C+     EA  +I +M   G  PD   YN+++ 
Sbjct: 195 SREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLT 254

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C+   L   + L  QM  SG   N  TYNIL+  + ++  ++ A  +   M  KG+ P
Sbjct: 255 ALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLP 314

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNK 530
           D  TY +++ GLC E  +  A  + +K
Sbjct: 315 DVWTYNTMVRGLCDEGKIDEAVRLRDK 341



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNI 475
            + +  +MKR    P++   N+L+ A  R +    L  +++++      G   N+ T+NI
Sbjct: 157 GHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNI 216

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI  +      E ALRL + M E G  PD  TY ++L  LC+ + L    ++  +  N  
Sbjct: 217 LIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSG 276

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVE 590
           +   R+  +  +   C+      A +++     +G+  D+    ++  +++ L D  +++
Sbjct: 277 LFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVW---TYNTMVRGLCDEGKID 333

Query: 591 MAI 593
            A+
Sbjct: 334 EAV 336



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 64/141 (45%)

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V Q+  + G+ P+V+ +N L+   C ++    A +L +QM   GC  +  TYN +++   
Sbjct: 198 VFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALC 257

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +  ++     L   M   G+ P+  TY  L+ G C+   L+ A EV        ++    
Sbjct: 258 KRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVW 317

Query: 542 ILSTFMISLCRRGHFLVATKL 562
             +T +  LC  G    A +L
Sbjct: 318 TYNTMVRGLCDEGKIDEAVRL 338


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 23/407 (5%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A L   G   +A+K+FDEM  + V  + I +   I    +   L     +  ++ +
Sbjct: 192 NVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLR 251

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE------EF 271
             + +    +   +++ G C+  R+ E   VLDE+  R+  PD   Y I+ +      + 
Sbjct: 252 --HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDS 309

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSGKFTI 329
           + M S+FE  V  KK  K+G       Y   IL  GL  + +I +A+E+ + +V+     
Sbjct: 310 QTMLSLFEESV--KKGVKIGA------YTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 330 DDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
              + N LI     I D   A   F  M  +   P   T + L   L K  +  E  ++ 
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             +  N     +E++N ++     +G+L + + ++ +M+ KGL P+V  Y S++ A C+ 
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN 481

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +  A  + D MF        + YN +I  + E G  + A  L   M   GV P   TY
Sbjct: 482 GKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTY 541

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS--TFMISLCRR 553
             L++GLC+++ +  A E+ +   N+   LA  ++S  T + + C R
Sbjct: 542 NLLIKGLCKQSQISEAEELLDSLRNYG--LAPDVISYNTLISACCYR 586



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 188/453 (41%), Gaps = 22/453 (4%)

Query: 69  GFFNWASQ-----QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           GF  W+       +PN     ++Y+ +L  L  + ++    +VL ++   K+  D   Y 
Sbjct: 242 GFRLWSQMLRHGLKPNV----ITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYS 297

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +     +  ++Q   S+F E       IG   C+ LL  L  DG I  A ++   + + 
Sbjct: 298 ILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNS 357

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRV 242
           G+  +T+ +   I  +C+   L    S+  +++ R   +I    I    +I+G  K +R+
Sbjct: 358 GLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSR---LIRPDHITYNALINGLGKVERI 414

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
            EA  ++ E+      P    +  + + +   G + +  ++L   ++ G+ P    Y   
Sbjct: 415 TEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSI 474

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGR 361
           +       +I EA  + + +          V NA+I + +       A +    M   G 
Sbjct: 475 VNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGV 534

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P++ T + L K LCK+++  E  E+   L       D+ SYN ++S  C       A  
Sbjct: 535 PPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALE 594

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG---CSGNLKTYNILIS 478
           + +EM + G+ P    Y  L  +      +   + L+ QM       CSG    YNI++ 
Sbjct: 595 LEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSG---IYNIMVD 651

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            +++ GE      L   M +KG+A     YTS+
Sbjct: 652 AYAKCGEESKVEALRKEMSDKGIA--VGDYTSM 682



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 147/337 (43%), Gaps = 5/337 (1%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G  K     +A K+ DE+  +   P+ I Y  + +     G +     +  +  + 
Sbjct: 193 VVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH 252

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G+ P    Y   + GL    R+ E   + + + S K   D    + L  G   + D ++ 
Sbjct: 253 GLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTM 312

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F   ++KG      T S L   LCK  K  +  EV + L  +        YN +++ 
Sbjct: 313 LSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLING 372

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  G L  A+ + Q+MK + + PD   YN+L+    + + +  A  L  +M  +G + +
Sbjct: 373 YCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPS 432

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           ++T+N LI  +   G++E    +  +M EKG+ P+  +Y S++   C+   +  A  + +
Sbjct: 433 VETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILD 492

Query: 530 KSVNHDVMLARSILSTFMISLCRRGH----FLVATKL 562
                DV+    + +  + +    G     F++A K+
Sbjct: 493 DMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKM 529



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/470 (19%), Positives = 189/470 (40%), Gaps = 38/470 (8%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  +I  L +      A  +F+E+            N+++      G +++  +++ +M 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE---------------------N 220
             G++ + I + V +   C   ++G+  ++LDE+  R+                      
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQ 310

Query: 221 SMIN------------GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268
           +M++            G+    ++++G CK  ++ +A +VL  L         + Y  + 
Sbjct: 311 TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLI 370

Query: 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT 328
             +  +G +     + ++ +   + P    Y   I GL    RI EA +L  VI   K  
Sbjct: 371 NGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDL--VIEMEKNG 428

Query: 329 IDDDV--LNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           ++  V   N LI +           +  + M EKG  P + +  ++    CK  K  E V
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAV 488

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            +   +   D     + YN ++      G   +A+ + ++MK  G+ P +  YN L++  
Sbjct: 489 AILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGL 548

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C++  +  A++L D +   G + ++ +YN LIS        + AL L   M + G+ P  
Sbjct: 549 CKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSP 608

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
            TY  L   L     +     ++ + ++ DV+    I +  + +  + G 
Sbjct: 609 RTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGE 658



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 2/244 (0%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN M+      G L   + +  +M R GL P+V  YN L+   CR   +     + D+M
Sbjct: 225 TYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM 284

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            +     +  TY+IL    S  G+ +  L LF   ++KGV   A T + LL GLC++  +
Sbjct: 285 ASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKI 344

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
             A EV    VN  ++    I +T +   C+ G    A  + + + S L   D  ++  L
Sbjct: 345 SKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNAL 404

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
           +  L     +  A + +  ++++      E    L  +   +   E   ++L  +QEK L
Sbjct: 405 INGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGL 464

Query: 640 DSEI 643
              +
Sbjct: 465 KPNV 468



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SYNV+++ L  +G   +A  +  EM  K + P+   YN++++   ++  L    +LW QM
Sbjct: 190 SYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQM 249

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G   N+ TYN+L+S     G +     +   M  + + PD  TY+ L +G  +  + 
Sbjct: 250 LRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDS 309

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           Q    +F +SV   V +     S  +  LC+ G    A ++L+ L
Sbjct: 310 QTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTL 354



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEAC 445
            +++L A     D  ++N  V     +G L EA G+++ M   G   P+   YN ++   
Sbjct: 139 AFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGL 198

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
            +      A KL+D+M       N  TYN +I    + G++E   RL+  ML  G+ P+ 
Sbjct: 199 WKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNV 258

Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL-STFMISLCRRGH 555
            TY  LL GLC+   +     V       D M +R ++   F  S+   GH
Sbjct: 259 ITYNVLLSGLCRAGRMGETAAVL------DEMASRKMVPDGFTYSILFDGH 303



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG----N 469
           GR  +  G  + +      PD   +N  ++AC     L  A  +  +M   GC G    N
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRM---GCDGAPAPN 187

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             +YN++I+   + G    A++LF  M EK V P+  TY ++++G  ++ +L++ F +++
Sbjct: 188 AFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWS 247

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
           + + H +       +  +  LCR G       +L  ++S
Sbjct: 248 QMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS 286


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 200/469 (42%), Gaps = 42/469 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++   +      A D   K+ K    TL++ +Y  II +  Q  N  +A ++  E
Sbjct: 360 VTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVRE 419

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++    D   +I ++++      G  +  L +FD +   G   S I +G  I  + +  K
Sbjct: 420 MEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGK 479

Query: 205 LGQVL--SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           + + L  S + EV   +++M   S    ++I+GF + K    AF V +++     KPD +
Sbjct: 480 VSKALEVSKMMEVAGIKHNMKTYS----MLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 535

Query: 263 AYRIVAEEFKLMGSV----------------------------FEREVVLKKK------- 287
            Y  +   F  MG++                            F R   +++        
Sbjct: 536 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 595

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
           R  G  P  + +   ILGL+ + ++ +A E L E+ ++G    +      + G  S  D 
Sbjct: 596 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 655

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A  +F  +  +G    + T   L K  CK  +    + V + +S+     +   YN++
Sbjct: 656 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 715

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G + EA  ++Q+MK++G+ PD+  Y S + ACC+   ++ A K   +M   G 
Sbjct: 716 IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGV 775

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             N+KTY  LI  ++     E AL+ F  M   G+ PD   Y  L+  L
Sbjct: 776 KPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 824



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/490 (18%), Positives = 200/490 (40%), Gaps = 5/490 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    ++ AL    +M   G+E S + + + +  F + A          E 
Sbjct: 326 VYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEA 385

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++R  ++   ++I   II+  C+   + +A  ++ E+           Y  + + + ++G
Sbjct: 386 KERHTTL--NAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIG 443

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           +  +  +V  + ++ G  P    Y   I   I   ++ +A E+ +++       +    +
Sbjct: 444 NEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYS 503

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G V   D  +A   F  +++ G  P +   +N+ +  C     D  +   K +   
Sbjct: 504 MLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 563

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R A  +   M+  G  P V  +N+L+     +  +  A
Sbjct: 564 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKA 623

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ +G+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 624 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 683

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +  +  +     + +  +    RRG    A +L++ +  +    D
Sbjct: 684 CCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPD 743

Query: 575 SHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLH 632
            H     + +   A +++ A + I+ ++        +    L    + +S PE  L    
Sbjct: 744 IHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQ 803

Query: 633 ALQEKCLDSE 642
            ++   L  +
Sbjct: 804 EMKSAGLKPD 813



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/462 (20%), Positives = 183/462 (39%), Gaps = 50/462 (10%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
              + ++   I   S VY  +I +   G++ ++A S   ++K    ++     + L+   
Sbjct: 310 GTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGF 369

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           A     + A   F E   R    + I +G  I+  C+   + Q  ++   VR+ E   I+
Sbjct: 370 AKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEAL---VREMEEEGID 426

Query: 225 GSV-IAVLIIHGFCKGKRVEEAFKVLDELRIREC--KPDFIAYRIVAEEFKLMGSVFERE 281
             + I   ++ G+      E+   V D  R++EC   P  I+Y  +   +  +G V +  
Sbjct: 427 APIDIYHTMMDGYTIIGNEEKCLIVFD--RLKECGFTPSVISYGCLINLYIKIGKVSKAL 484

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNAL 337
            V K     G+      Y   I G +  +    A  + E +V      D    ++++ A 
Sbjct: 485 EVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAF 544

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G + ++D   AI     M ++   PT  T   +     +       +E++ ++  +   
Sbjct: 545 CG-MGNMD--RAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCI 601

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP------------------------ 433
             + ++N ++  L    ++ +A  ++ EM   G+ P                        
Sbjct: 602 PTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEY 661

Query: 434 -----------DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
                      DV  Y +L++ACC+   ++ A  +  +M +     N   YNILI  ++ 
Sbjct: 662 FTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWAR 721

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            G++  A  L   M ++GV PD  TYTS +   C+  ++Q A
Sbjct: 722 RGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRA 763



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/405 (19%), Positives = 161/405 (39%), Gaps = 48/405 (11%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +SY  ++       +++    V K ++V  I  +   Y  +I   ++ K+   AF
Sbjct: 460 FTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAF 519

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +VF +V  +   + P++   N+++      G +D A++   EM       +T  F   I 
Sbjct: 520 AVFEDVVKD--GLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 577

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELR 253
            F  +  + + L + D +R       +G +  V     +I G  +  ++E+A ++LDE+ 
Sbjct: 578 GFARSGDMRRALEIFDMMR------WSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 631

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           +    P+   Y  +   +  +G   +      K +  G+      Y   +       R+ 
Sbjct: 632 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 691

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            A  +   + S K                   PR+  V +N +I+               
Sbjct: 692 SALAVTREMSSQKI------------------PRNTFV-YNILID--------------- 717

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              +R    E  E+ + +       D+ +Y   ++  C +G ++ A   IQEM+  G+ P
Sbjct: 718 GWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKP 777

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           ++  Y +L+    R  L   A K + +M ++G   +   Y+ L++
Sbjct: 778 NIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMT 822



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           + + +MV++    G +  A G  + M+ +G++P    Y SL+ A      +  A     +
Sbjct: 290 KEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRK 349

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   +L TY+IL+  F+++ + E A   F    E+    +A  Y +++   CQ  N
Sbjct: 350 MKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACN 409

Query: 521 LQAA 524
           +  A
Sbjct: 410 MTQA 413



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+  I++  RK     V++Y        R   +  A+  ++ M A G       Y  LI
Sbjct: 279 QAFERIKKPSRKEFGLMVTYY-------ARRGDMHHARGTFESMRARGIEPTSHVYTSLI 331

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             ++   ++E AL     M E+G+     TY+ L+ G  +  + +AA   F ++      
Sbjct: 332 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTT 391

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           L   I    + + C+  +   A  L+R +  +
Sbjct: 392 LNAIIYGNIIYAHCQACNMTQAEALVREMEEE 423



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           ++K   + LD   Y  ++ +  +    Q A +V  E+          + N L+   A  G
Sbjct: 664 KLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRG 723

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV- 227
            +  A ++  +M   GV+     +  FI   C   K G +      +++ E   +  ++ 
Sbjct: 724 DVWEAAELMQQMKQEGVQPDIHTYTSFINACC---KAGDMQRATKTIQEMEVVGVKPNIK 780

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI----------VAEEFKLMGSV 277
               +IHG+ +    E+A K   E++    KPD   Y            VAEE+   G V
Sbjct: 781 TYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVV 840


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 212/446 (47%), Gaps = 21/446 (4%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+++L  L  +RQ    ++++ ++  N    +   +   I +  Q     +A  + + +
Sbjct: 214 TYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRM 273

Query: 146 -KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            ++ C    P++   ++L+   +  G +D+A+++ + M  +    +TI +   +   C  
Sbjct: 274 PQYGCT---PDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKP---NTICYNAALKGLCIA 327

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +   V  ++ E+  R++ + N +  ++L     C+   V+ A +VL+++    C+PD +
Sbjct: 328 QRWEDVGQLIVEM-VRKDCLPNEATFSMLT-SCLCQNGLVDCAMEVLEQMHKYGCRPDAV 385

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   F   G V +    LK    +  +P    +   + GL    R  +A+EL   +
Sbjct: 386 IYNTLIYSFSEQGRVDD---ALKLLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQM 442

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +     + +   N LI S+       +AI  F  M + G  P + T S+L   L ++   
Sbjct: 443 LREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLV 502

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           +  +E+++ +       D+  YN ++  LC + R  +A  +I  M RK   P+   +N L
Sbjct: 503 ESAIELFQSMPCK---PDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNIL 559

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           + + C++ L+  A ++++QM   G + ++ TYN LI+ FSE G ++ A RL   M  K  
Sbjct: 560 INSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK-- 617

Query: 502 APDATTYTSLLEGLCQETNLQAAFEV 527
            PDA +Y S L+GLC+    + A EV
Sbjct: 618 -PDAVSYNSALKGLCRAERWKEAEEV 642



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 22/442 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+A    DG + +A ++           + + +   I  +C + +L   L+++  +  
Sbjct: 150 NTLVAGYCRDGRLADAERLLAAAGLS-GAANVVTYTTLINGYCRSGRLADALALIASMPV 208

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             ++    +V+      G C  ++ E+A  ++ E+    C P+ + +      F   G +
Sbjct: 209 APDTYTYNTVL-----MGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNG-L 262

Query: 278 FEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID-DDVLN 335
            +R V +L +  + G  P    Y   + G   + R+ +A EL   ++    TI  +  L 
Sbjct: 263 LDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALK 322

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            L  +    D    IV    M+ K  +P  +T S L+  LC+    D  +EV + +    
Sbjct: 323 GLCIAQRWEDVGQLIVE---MVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYG 379

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D   YN ++      GR+ +A  ++  M      PDV  +N+ ++  CR +    A+
Sbjct: 380 CRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALKGLCRAERWDDAE 436

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L  QM    C     T+NILI    + G +  A+ +F  M + G  PD  TY+SL+ GL
Sbjct: 437 ELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGL 496

Query: 516 CQETNLQAAFEVFNK-SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGHS 573
            ++  +++A E+F       D+    ++L      LCR   +  A +L+  ++  D   +
Sbjct: 497 SEQGLVESAIELFQSMPCKPDIFGYNAVLK----GLCRAARWEDAGELISNMARKDCPPN 552

Query: 574 D-SHVILLKSLADAREVEMAIE 594
           + +  IL+ SL     V+ AIE
Sbjct: 553 EITFNILINSLCQKGLVDRAIE 574



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 168/393 (42%), Gaps = 50/393 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N++L  L      ++A  +  EM       + + F   I  FC+N  L + + +LD  R 
Sbjct: 216 NTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLD--RM 273

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +       VI   +++GF +  RV++A ++L+ +    CKP+ I Y             
Sbjct: 274 PQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGML---CKPNTICYNAAL--------- 321

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD--DVLN 335
                     + L +A R  D  + I+ ++  R+ C   E    +++     +   D   
Sbjct: 322 ----------KGLCIAQRWEDVGQLIVEMV--RKDCLPNEATFSMLTSCLCQNGLVDCAM 369

Query: 336 ALIGSVSSIDPRSAIVFFNFMI----EKGRV-------------PTLSTLSNLSKNLCKR 378
            ++  +     R   V +N +I    E+GRV             P + + +   K LC+ 
Sbjct: 370 EVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGLCRA 429

Query: 379 NKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            + D+  E + ++L  +    +M ++N+++  LC +GR+  A  V ++M + G  PD+  
Sbjct: 430 ERWDDAEELIVQMLREDCPLIEM-TFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVT 488

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           Y+SL+     + L+  A +L+  M    C  ++  YN ++         E A  L  NM 
Sbjct: 489 YSSLINGLSEQGLVESAIELFQSM---PCKPDIFGYNAVLKGLCRAARWEDAGELISNMA 545

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            K   P+  T+  L+  LCQ+  +  A EVF +
Sbjct: 546 RKDCPPNEITFNILINSLCQKGLVDRAIEVFEQ 578



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 138/319 (43%), Gaps = 20/319 (6%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L + L  +G +D A+++ ++M   G     + +   I+ F E  ++   L +L       
Sbjct: 355 LTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLL------- 407

Query: 220 NSM-INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           NSM  +  VI+    + G C+ +R ++A +++ ++   +C    + + I+ +     G V
Sbjct: 408 NSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRV 467

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--N 335
                V ++  K G  P    Y   I GL  +  +  A EL +           D+   N
Sbjct: 468 NNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQ-----SMPCKPDIFGYN 522

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           A++ G   +     A    + M  K   P   T + L  +LC++   D  +EV++ +   
Sbjct: 523 AVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKY 582

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +YN +++     GRL +A  ++  M  K   PD   YNS ++  CR +  + A
Sbjct: 583 GSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK---PDAVSYNSALKGLCRAERWKEA 639

Query: 455 KKLWDQMFASGCSGNLKTY 473
           +++  +M    C  N  T+
Sbjct: 640 EEVVAEMLRMKCPPNEVTF 658



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 149/360 (41%), Gaps = 23/360 (6%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           + Y++ LK L ++++   +  ++ ++       + + +  +   L Q      A  V  +
Sbjct: 315 ICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQ 374

Query: 145 V-KFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           + K+ C    P+  I N+L+   +  G +D+ALK+ + M         I F   +   C 
Sbjct: 375 MHKYGCR---PDAVIYNTLIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALKGLCR 428

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
             +      ++ ++ + +  +I   +   ++I   C+  RV  A +V +++    C PD 
Sbjct: 429 AERWDDAEELIVQMLREDCPLI--EMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDI 486

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y  +       G V   E  ++  + +   P    Y   + GL    R  +A EL   
Sbjct: 487 VTYSSLINGLSEQGLV---ESAIELFQSMPCKPDIFGYNAVLKGLCRAARWEDAGELISN 543

Query: 322 IVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +       ++   N LI S+     +D   AI  F  M + G  P + T + L     ++
Sbjct: 544 MARKDCPPNEITFNILINSLCQKGLVD--RAIEVFEQMPKYGSTPDIFTYNALINGFSEQ 601

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSF 437
            + D+     ++LS      D  SYN  +  LC + R +EA  V+ EM R    P +V+F
Sbjct: 602 GRLDD---ARRLLSTMSCKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+++  LC   RL +A  V+  +K  G    VS +N+L+   CR+  L  A++L      
Sbjct: 116 NILIKKLCAQRRLADAERVLDALKAAGAADPVS-HNTLVAGYCRDGRLADAERLLAAAGL 174

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
           SG + N+ TY  LI+ +   G +  AL L  +M    VAPD  TY ++L GLC     + 
Sbjct: 175 SG-AANVVTYTTLINGYCRSGRLADALALIASM---PVAPDTYTYNTVLMGLCGARQWED 230

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LL 580
           A  +  + V +         +T + + C+ G    A +LL  +    G +   VI   L+
Sbjct: 231 AEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQ-YGCTPDVVIYSTLV 289

Query: 581 KSLADAREVEMAIE 594
              ++   V+ AIE
Sbjct: 290 NGFSEQGRVDDAIE 303



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 128/336 (38%), Gaps = 74/336 (22%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA----------- 419
           L K LC + +  +   V   L A     D  S+N +V+  C  GRL +A           
Sbjct: 118 LIKKLCAQRRLADAERVLDALKAAGA-ADPVSHNTLVAGYCRDGRLADAERLLAAAGLSG 176

Query: 420 -------YGVIQEMKRKG-------------LDPDVSFYNS-LMEAC------------- 445
                    +I    R G             + PD   YN+ LM  C             
Sbjct: 177 AANVVTYTTLINGYCRSGRLADALALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALMA 236

Query: 446 ---------------------CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
                                C+  LL  A +L D+M   GC+ ++  Y+ L++ FSE G
Sbjct: 237 EMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQG 296

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            ++ A+ L + ML K   P+   Y + L+GLC     +   ++  + V  D +   +  S
Sbjct: 297 RVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFS 353

Query: 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQES 602
                LC+ G    A ++L  +       D+ +   L+ S ++   V+ A++ +  +   
Sbjct: 354 MLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM-PC 412

Query: 603 SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           SP ++   +A L     +  + +   L++  L+E C
Sbjct: 413 SPDVI-SFNAALKGLCRAERWDDAEELIVQMLREDC 447



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 76  QQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           Q P +  +P  ++Y S++  LS   +   ++S ++  +      D   Y  ++  L +  
Sbjct: 476 QMPKYGCTPDIVTYSSLINGLS---EQGLVESAIELFQSMPCKPDIFGYNAVLKGLCRAA 532

Query: 134 NTQKAFSVFNEVKFNCEDIGP-EIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
             + A  + + +    +D  P EI  N L+  L   G +D A+++F++M   G       
Sbjct: 533 RWEDAGELISNMAR--KDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFT 590

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +   I  F E  +L     +L  +  + +++   S +      G C+ +R +EA +V+ E
Sbjct: 591 YNALINGFSEQGRLDDARRLLSTMSCKPDAVSYNSAL-----KGLCRAERWKEAEEVVAE 645

Query: 252 LRIRECKPDFIAYRIVAEEF 271
           +   +C P+ + ++     F
Sbjct: 646 MLRMKCPPNEVTFKYANRLF 665


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 158/333 (47%), Gaps = 6/333 (1%)

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           G ++  L+     K K    A  +  ++ ++  +P+ +   I+   F  +G +     VL
Sbjct: 69  GKILGYLV-----KMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVL 123

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            K  KLG  P T      + GL ++  +  +    + +V+  F ++      L+  +  I
Sbjct: 124 GKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKI 183

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            + R A+     + ++   P +   S +   LCK    ++  + +  ++A   F ++ +Y
Sbjct: 184 GETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITY 243

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           + ++   C +G+L  A+ ++ EM  K ++P+V  YN L++A C+E  ++ AKKL  +M  
Sbjct: 244 STLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHH 303

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   ++ TYN ++    +   ++ A  LF  M + G+ P+  TYT+L++GLC+   L+ 
Sbjct: 304 KGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKN 363

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           A ++F   +     +     +  +  LC+ G F
Sbjct: 364 AQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMF 396



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 165/410 (40%), Gaps = 48/410 (11%)

Query: 93  SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152
           ++SLSRQ+      +K ++ N +TL+      +I           +FSV  ++       
Sbjct: 84  AISLSRQME-----VKGIEPNLVTLN-----ILINCFCHLGQMAFSFSVLGKILKLGYQP 133

Query: 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
                N+L+  L   G +  +L   D++  +G + + + +G  +   C   K+G+    +
Sbjct: 134 DTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLC---KIGETRCAV 190

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
             +R  E+      V+    II G CK K V +A+    E+  R   P+ I Y  +   F
Sbjct: 191 KLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGF 250

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
            L G +     +L +     + P    Y   I  L  E ++ EAK+L             
Sbjct: 251 CLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKL------------- 297

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                                   M  KG+   + T +++   LCK    D+   ++  +
Sbjct: 298 ---------------------LAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKM 336

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  +  +Y  ++  LC  GRL+ A  + Q +  KG   DV  YN ++   C+E + 
Sbjct: 337 KKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMF 396

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
             A  +  +M  +GC  N  T++I+I    E  E + A +L H M+ KG+
Sbjct: 397 DKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 84/165 (50%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ + N++++  C  G++  ++ V+ ++ + G  PD    N+LM+  C +  ++ +    
Sbjct: 99  NLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFH 158

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D++ A G   N  +Y  L++   ++GE   A++L   + ++   PD   Y+++++GLC++
Sbjct: 159 DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKD 218

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
             +  A++ F++     +       ST +   C  G  + A  LL
Sbjct: 219 KIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLL 263



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 25/190 (13%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T+S  ++ L  R+ +  ++E  K+L    Y   M+ Y   +S             + ++M
Sbjct: 49  TVSQFNRLLLVRH-TPPIIEFGKILG---YLVKMKHYPTAIS-------------LSRQM 91

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           + KG++P++   N L+   C    +  +  +  ++   G   +  T N L+      GE+
Sbjct: 92  EVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEV 151

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSI 542
           + +L     ++ +G   +  +Y +LL GLC+    + A ++     ++S   DV++  +I
Sbjct: 152 KRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTI 211

Query: 543 LSTFMISLCR 552
           +      LC+
Sbjct: 212 ID----GLCK 217


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/565 (21%), Positives = 228/565 (40%), Gaps = 86/565 (15%)

Query: 81  THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
           T    + H +L++      I   +    Q K   + LD   Y   +  L    N+  A S
Sbjct: 37  TGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALS 96

Query: 141 VFNEVKFNCEDIGPE-ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
           +  E++     I PE    S++     +G +  AL++ D+M + G   +       +  +
Sbjct: 97  LLREMRA-AGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGY 155

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C    L   L +++E+   E+ ++   V   ++I G CK   +E+AF+   E++ +  + 
Sbjct: 156 CMQGNLRSALVLVNEIS--ESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS 213

Query: 260 DFIAYRIVAEEF------------------KLMGSVFEREVVLK---KKRKL-------- 290
              +   + E +                    + +VF    +L    K+ K+        
Sbjct: 214 SVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWD 273

Query: 291 -----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
                G++P    Y   ILG   +  I  A ++ + ++   FT +      L+ G     
Sbjct: 274 EVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKG 333

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D  +A   F+ M +   +PT +TL  + K LCK  +S E  +++    +  +      YN
Sbjct: 334 DIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYN 393

Query: 405 VMVSFLCTSGRLREAYGVIQEM-----------------------------------KRK 429
            ++      G +  A  V +EM                                   KRK
Sbjct: 394 TIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRK 453

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL  D+  Y +L++  C+   ++ A +L +++  +G S N   YN +I+ F  +  +E A
Sbjct: 454 GLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEA 513

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL------ 543
           + L+  M+ +G+  D  TYTSL++GL +   L  A ++      H  ML++ IL      
Sbjct: 514 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDI------HTEMLSKGILPDDRAH 567

Query: 544 STFMISLCRRGHFLVATKLLRGLSS 568
           +  +  LC +G F  A K+L  ++ 
Sbjct: 568 TVLINGLCNKGQFENARKILEDMNG 592



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 204/475 (42%), Gaps = 21/475 (4%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           S++K   +   + +   ++ ++  + +  +   Y  +I    +  N +KAF  ++E+K  
Sbjct: 150 SLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 209

Query: 149 CEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
                    NS+L     +GY+      NA  MF++    G+  +   F   +   C+  
Sbjct: 210 GIRSSVYSLNSIL-----EGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEG 263

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           K+ +  ++ DEV  +    I+ +V++   II G C+   +  A KV  E+      P+ +
Sbjct: 264 KMNEACNLWDEVIAKG---ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAV 320

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            + I+ + +   G +     +  + +   + P        I GL    R  E ++L    
Sbjct: 321 TFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 380

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           VS  F       N +I G +   +   A   +  M E G  P+  T ++L    CK N  
Sbjct: 381 VSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNI 440

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  +++   +       D+++Y  ++   C    ++ A+ ++ E++  GL P+   YNS+
Sbjct: 441 DLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSM 500

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +      + +  A  L+ +M   G   +LKTY  LI    + G +  A  +   ML KG+
Sbjct: 501 ITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGI 560

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            PD   +T L+ GLC +   + A ++  + +N   M+   ++   +I+    GHF
Sbjct: 561 LPDDRAHTVLINGLCNKGQFENARKIL-EDMNGKNMIPSVLIYNTLIA----GHF 610



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 174/437 (39%), Gaps = 47/437 (10%)

Query: 119 SSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           SSVY    I+   ++ ++ Q AF++FN+             N+LL+ L  +G ++ A  +
Sbjct: 213 SSVYSLNSILEGYLKCQSWQNAFTMFNDA-LESGLANVFTFNTLLSWLCKEGKMNEACNL 271

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           +DE+  +G+  + + +   I   C    +     +  E+   +N     +V   +++ G+
Sbjct: 272 WDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML--DNGFTPNAVTFTILMDGY 329

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K   +E AF +   ++     P      I+ +     G  FE   +  K    G  P  
Sbjct: 330 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTC 389

Query: 297 NDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
             Y   I G I E  I  A    +E+ EV ++        +++      ++ID   A+  
Sbjct: 390 MPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKG-NNIDL--ALKL 446

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKR---------------------------------- 378
            N M  KG    +     L    CKR                                  
Sbjct: 447 LNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKN 506

Query: 379 -NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            N  +E +++YK +       D+++Y  ++  L  SGRL  A  +  EM  KG+ PD   
Sbjct: 507 MNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRA 566

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +  L+   C +     A+K+ + M       ++  YN LI+   + G ++ A RL   ML
Sbjct: 567 HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEML 626

Query: 498 EKGVAPDATTYTSLLEG 514
           ++G+ PD  TY  L+ G
Sbjct: 627 DRGLVPDNITYDILVNG 643



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 188/439 (42%), Gaps = 43/439 (9%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L     +G I  A + F +   RGVE     + +F+   C     G  LS+L E+R   
Sbjct: 46  MLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAG 105

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
                G+  +V  I    K   V EA ++ D++       +      + + + + G++  
Sbjct: 106 WIPPEGTFTSV--ITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRS 163

Query: 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI- 338
             V++ +  + G+ P    Y   I G      I +A E    + +         LN+++ 
Sbjct: 164 ALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILE 223

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G +     ++A   FN  +E G                       L  V+          
Sbjct: 224 GYLKCQSWQNAFTMFNDALESG-----------------------LANVF---------- 250

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
              ++N ++S+LC  G++ EA  +  E+  KG+ P+V  YN+++   CR+D +  A K++
Sbjct: 251 ---TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 307

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +M  +G + N  T+ IL+  + + G+IE A  +FH M +  + P  TT   +++GLC+ 
Sbjct: 308 KEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKA 367

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI 578
                  ++FNK V+   +      +T +    + G+  +A+ + R +  ++G + S V 
Sbjct: 368 GRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREM-CEVGITPSTVT 426

Query: 579 ---LLKSLADAREVEMAIE 594
              L+        +++A++
Sbjct: 427 YTSLIDGFCKGNNIDLALK 445



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 172/413 (41%), Gaps = 53/413 (12%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGF-----FNWASQ------QPNFTHSPLSYHSILKSL 94
           +L   ++A+ I+P +++++++ LG       N A +         FT + +++  ++   
Sbjct: 270 NLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGY 329

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
                I    S+  ++K   I    +    II  L +   + +   +FN  KF  +   P
Sbjct: 330 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFN--KFVSQGFVP 387

Query: 155 EIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
                N+++     +G I+ A  ++ EM   G+  ST+ +   I  FC+   +   L +L
Sbjct: 388 TCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLL 447

Query: 213 DEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           ++++++   M    + A   +I GFCK + ++ A ++L+ELR     P+   Y  +   F
Sbjct: 448 NDMKRKGLKM---DIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGF 504

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
           K M +V E   + KK    G+      Y   I GL+   R+  A ++   ++S     DD
Sbjct: 505 KNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDD 564

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                          R+  V  N                    LC + + +   ++ + +
Sbjct: 565 ---------------RAHTVLIN-------------------GLCNKGQFENARKILEDM 590

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +  +    +  YN +++     G L+EA+ +  EM  +GL PD   Y+ L+  
Sbjct: 591 NGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 643



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 88/194 (45%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P++  ++ L   + ++N + E  E++  +       D  + +VM+      G + EA  
Sbjct: 2   TPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQ 61

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
              + K +G++ D   Y+  +   C +     A  L  +M A+G      T+  +I+   
Sbjct: 62  HFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACV 121

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G +  ALRL  +M+  G + +    TSL++G C + NL++A  + N+     ++  + 
Sbjct: 122 KEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKV 181

Query: 542 ILSTFMISLCRRGH 555
             S  +   C+ G+
Sbjct: 182 TYSVLIDGCCKNGN 195


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/537 (21%), Positives = 219/537 (40%), Gaps = 86/537 (16%)

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLLAVLASD 167
           Q K   + LD   Y   +  L    N+  A S+  E++     I PE    S++     +
Sbjct: 183 QAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRA-AGWIPPEGTFTSVITACVKE 241

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +  AL++ D+M + G   +       +  +C    L   L +++E+   E+ ++   V
Sbjct: 242 GNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEIS--ESGLVPNKV 299

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF---------------- 271
              ++I G CK   +E+AF+   E++ +  +    +   + E +                
Sbjct: 300 TYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDA 359

Query: 272 --KLMGSVFEREVVLK---KKRKL-------------GVAPRTNDYREFILGLIVERRIC 313
               + +VF    +L    K+ K+             G++P    Y   ILG   +  I 
Sbjct: 360 LESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNIN 419

Query: 314 EAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372
            A ++ + ++   FT +      L+ G     D  +A   F+ M +   +PT +TL  + 
Sbjct: 420 AACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIII 479

Query: 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM------ 426
           K LCK  +S E  +++    +  +      YN ++      G +  A  V +EM      
Sbjct: 480 KGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGIT 539

Query: 427 -----------------------------KRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
                                        KRKGL  D+  Y +L++  C+   ++ A +L
Sbjct: 540 PSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHEL 599

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
            +++  +G S N   YN +I+ F  +  +E A+ L+  M+ +G+  D  TYTSL++GL +
Sbjct: 600 LNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLK 659

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSIL------STFMISLCRRGHFLVATKLLRGLSS 568
              L  A ++      H  ML++ IL      +  +  LC +G F  A K+L  ++ 
Sbjct: 660 SGRLLYASDI------HTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNG 710



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 204/475 (42%), Gaps = 21/475 (4%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           S++K   +   + +   ++ ++  + +  +   Y  +I    +  N +KAF  ++E+K  
Sbjct: 268 SLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 327

Query: 149 CEDIGPEICNSLLAVLASDGYI-----DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
                    NS+L     +GY+      NA  MF++    G+  +   F   +   C+  
Sbjct: 328 GIRSSVYSLNSIL-----EGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEG 381

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           K+ +  ++ DEV  +    I+ +V++   II G C+   +  A KV  E+      P+ +
Sbjct: 382 KMNEACNLWDEVIAKG---ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAV 438

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            + I+ + +   G +     +  + +   + P        I GL    R  E ++L    
Sbjct: 439 TFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 498

Query: 323 VSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           VS  F       N +I G +   +   A   +  M E G  P+  T ++L    CK N  
Sbjct: 499 VSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNI 558

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  +++   +       D+++Y  ++   C    ++ A+ ++ E++  GL P+   YNS+
Sbjct: 559 DLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSM 618

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +      + +  A  L+ +M   G   +LKTY  LI    + G +  A  +   ML KG+
Sbjct: 619 ITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGI 678

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            PD   +T L+ GLC +   + A ++  + +N   M+   ++   +I+    GHF
Sbjct: 679 LPDDRAHTVLINGLCNKGQFENARKIL-EDMNGKNMIPSVLIYNTLIA----GHF 728



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 174/437 (39%), Gaps = 47/437 (10%)

Query: 119 SSVYRF--IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           SSVY    I+   ++ ++ Q AF++FN+             N+LL+ L  +G ++ A  +
Sbjct: 331 SSVYSLNSILEGYLKCQSWQNAFTMFNDA-LESGLANVFTFNTLLSWLCKEGKMNEACNL 389

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           +DE+  +G+  + + +   I   C    +     +  E+   +N     +V   +++ G+
Sbjct: 390 WDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML--DNGFTPNAVTFTILMDGY 447

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K   +E AF +   ++     P      I+ +     G  FE   +  K    G  P  
Sbjct: 448 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTC 507

Query: 297 NDYREFILGLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF 352
             Y   I G I E  I  A    +E+ EV ++        +++      ++ID   A+  
Sbjct: 508 MPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKG-NNIDL--ALKL 564

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKR---------------------------------- 378
            N M  KG    +     L    CKR                                  
Sbjct: 565 LNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKN 624

Query: 379 -NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            N  +E +++YK +       D+++Y  ++  L  SGRL  A  +  EM  KG+ PD   
Sbjct: 625 MNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRA 684

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           +  L+   C +     A+K+ + M       ++  YN LI+   + G ++ A RL   ML
Sbjct: 685 HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEML 744

Query: 498 EKGVAPDATTYTSLLEG 514
           ++G+ PD  TY  L+ G
Sbjct: 745 DRGLVPDNITYDILVNG 761



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 186/432 (43%), Gaps = 43/432 (9%)

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           +G I  A + F +   RGVE     + +F+   C     G  LS+L E+R        G+
Sbjct: 171 EGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGT 230

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
             +V  I    K   V EA ++ D++       +      + + + + G++    V++ +
Sbjct: 231 FTSV--ITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 288

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
             + G+ P    Y   I G      I +A E    + +         LN+++ G +    
Sbjct: 289 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQS 348

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
            ++A   FN  +E G                       L  V+             ++N 
Sbjct: 349 WQNAFTMFNDALESG-----------------------LANVF-------------TFNT 372

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++S+LC  G++ EA  +  E+  KG+ P+V  YN+++   CR+D +  A K++ +M  +G
Sbjct: 373 LLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNG 432

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            + N  T+ IL+  + + G+IE A  +FH M +  + P  TT   +++GLC+        
Sbjct: 433 FTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGR 492

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LLKS 582
           ++FNK V+   +      +T +    + G+  +A+ + R +  ++G + S V    L+  
Sbjct: 493 DLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREM-CEVGITPSTVTYTSLIDG 551

Query: 583 LADAREVEMAIE 594
                 +++A++
Sbjct: 552 FCKGNNIDLALK 563



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 157/365 (43%), Gaps = 11/365 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +SY++I+        INA   V K++  N  T ++  +  ++    +  + + AFS+F+ 
Sbjct: 403 VSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHR 462

Query: 145 VKFNCEDIGPEICNSLLAV----LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +K    D      ++ L +    L   G       +F++   +G   + + +   I  F 
Sbjct: 463 MK----DANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFI 518

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +   +    ++  E+   E  +   +V    +I GFCKG  ++ A K+L++++ +  K D
Sbjct: 519 KEGNINLASNVYREMC--EVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMD 576

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
             AY  + + F     +     +L + R  G++P    Y   I G      + EA +L +
Sbjct: 577 IKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYK 636

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
            +V+     D     +LI G + S     A      M+ KG +P     + L   LC + 
Sbjct: 637 KMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKG 696

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + +   ++ + ++  +    +  YN +++     G L+EA+ +  EM  +GL PD   Y+
Sbjct: 697 QFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYD 756

Query: 440 SLMEA 444
            L+  
Sbjct: 757 ILVNG 761


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 187/417 (44%), Gaps = 48/417 (11%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVL 231
           A+ + D M  RG +     +G  +   C+   +   LS+L   +K E   I   V I   
Sbjct: 204 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL---KKMEKGKIEADVVIYTT 260

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   C  K V +A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           + P    +   I   + E ++ EA++L                                 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKL--------------------------------- 347

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            ++ MI++   P + T S+L    C  ++ DE   +++++ + D F ++ +YN ++   C
Sbjct: 348 -YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            + R+ E   + +EM ++GL  +   YN+L++   +      A+K++ +M + G   ++ 
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN-- 529
           TY+IL+    + G++E AL +F  + +  + PD  TY  ++EG+C+   ++  +++F   
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 530 --KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKS 582
             K V  +V++  +++S F    CR+G    A  L R +  D  L +S ++  L+++
Sbjct: 527 SLKGVKPNVIIYTTMISGF----CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 5/365 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG  P        + G    +RI EA  L + +   ++  +    N LI  + 
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLF 196

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+ +G  P L T   +   LCKR   D  + + K +       D+ 
Sbjct: 197 LHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 256

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y  ++  LC    + +A  +  EM  KG+ P+V  YNSL+   C       A +L   M
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T++ LI  F + G++  A +L+  M+++ + PD  TY+SL+ G C    L
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A  +F   ++ D        +T +   C+        +L R +S    +G++ ++  L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

Query: 580 LKSLADAREVEMAIEHI-KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           ++ L  A + +MA +   K + +  P  +   S  L   L      E  L++   LQ+  
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI-LLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 639 LDSEI 643
           ++ +I
Sbjct: 496 MEPDI 500



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 95/203 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M++   +P++   + L   + K NK D ++ + + +       D+ SYN++++
Sbjct: 64  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   +L  A  V+ +M + G +PD+   +SL+   C    +  A  L DQMF      
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  T+N LI       +   A+ L   M+ +G  PD  TY +++ GLC+  ++  A  + 
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 529 NKSVNHDVMLARSILSTFMISLC 551
            K     +     I +T + +LC
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALC 266



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 2/216 (0%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           LS+N+    K D+ V+++  +  +     +  +N ++S +    +      + + M+   
Sbjct: 51  LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 110

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  D+  YN L+   CR   L  A  +  +M   G   ++ T + L++ +     I  A+
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L   M      P+  T+ +L+ GL        A  + ++ V            T +  L
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           C+RG   +A  LL+ +    G  ++ V++  ++ DA
Sbjct: 231 CKRGDIDLALSLLKKMEK--GKIEADVVIYTTIIDA 264


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/507 (20%), Positives = 231/507 (45%), Gaps = 47/507 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKV--NKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           +SY+++L +L   RQ   +D+ L  ++V  ++    +  Y  ++ +L   + T +A  + 
Sbjct: 79  VSYNTVLAALC--RQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
            +++ +   + P++    +L+  L     +D A+++  EM   G+E + + +   +  +C
Sbjct: 137 RDMQAS--GVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYC 194

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           +  +   V  + +E+  R   +    V+   +I   C+  +V++A +V+D++  R  +P+
Sbjct: 195 KAGRWECVSKVFEEMSGR--GIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN 252

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            + Y ++       GSV E   +     + GVA     Y   I GL     + EA  L E
Sbjct: 253 VVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLE 312

Query: 321 VIVSGKFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            ++ G+  ++ +V+  N++I G   +   R A    + M E G    L T + L   L +
Sbjct: 313 EMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLR 372

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +K  + +E+   ++++    D  +Y+++++  C   ++  A  ++ +M+R G++P++  
Sbjct: 373 VHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVH 432

Query: 438 YNSLMEACCREDLLRPAKKLWDQM----------FASGCSGNLK---------------- 471
           Y  L+ A C + ++  A+  +D+M          +++   G  +                
Sbjct: 433 YIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLD 492

Query: 472 --------TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
                   TY++LI+ F+  G++  A R+   M   G  PD   + SL++G   + + + 
Sbjct: 493 EGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEK 552

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISL 550
             E+  +    D+ L   I+ST    L
Sbjct: 553 VLELIREMTAKDIALDSKIISTIYTCL 579



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 2/210 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+     M   G  P + T   L + LC     D+ VE+ + +  +    ++  Y+ ++ 
Sbjct: 132 AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C +GR      V +EM  +G++PDV  Y  L+++ CRE  ++ A ++ D+M   G   
Sbjct: 192 GYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEP 251

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TYN+LI+   + G ++ A+ L +NMLEKGVA DA TY +L+ GL     +  A  + 
Sbjct: 252 NVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLL 311

Query: 529 NKSVNHDVMLARSILS--TFMISLCRRGHF 556
            + ++ + M+  ++++  + +  LC+ G  
Sbjct: 312 EEMIHGETMVEPNVVTFNSVIHGLCKTGRM 341



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 210/497 (42%), Gaps = 53/497 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
            +L+  L ++     A+ +  +M   GV    + +G  I   C+ A + + + +L E+  
Sbjct: 117 TTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC- 175

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E+ +    V+   ++ G+CK  R E   KV +E+  R  +PD + Y  + +     G V
Sbjct: 176 -ESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   V+ K  + G+ P    Y   I  +  E  + EA  L   ++     +D    N L
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTL 294

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I  +S + +   A+     MI                        + +VE          
Sbjct: 295 ITGLSGVLEMDEAMGLLEEMIH----------------------GETMVE---------- 322

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ ++N ++  LC +GR+R+A+ V   M   G   ++  +N L+    R   ++ A +
Sbjct: 323 -PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAME 381

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L D+M +SG   +  TY+ILI+ F ++ +++ A  L   M   G+ P+   Y  LL  LC
Sbjct: 382 LMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALC 441

Query: 517 QETNLQAA---FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSS 568
           ++  ++ A   F+  +K+   DV+      ST +   CR      A + L+     GL  
Sbjct: 442 EQGMMEQARNFFDEMHKNCKLDVV----AYSTMIHGACRLRDRKSAEEFLKHMLDEGLIP 497

Query: 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628
           D   S ++ +L+   A++ ++  A   +K +  S       +   L     +    E +L
Sbjct: 498 D---SVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVL 554

Query: 629 LLLHALQEK--CLDSEI 643
            L+  +  K   LDS+I
Sbjct: 555 ELIREMTAKDIALDSKI 571



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 3/271 (1%)

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D ++Y  V       G   +  + L +       P    Y   +  L  ERR  +A  L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + +     D      LI G   + D   A+     M E G  P +   S L +  CK 
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            + + + +V++ +S      D+  Y  ++  LC  G++++A  V+ +M  +GL+P+V  Y
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTY 256

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML- 497
           N L+ + C+E  ++ A  L + M   G + +  TYN LI+  S V E++ A+ L   M+ 
Sbjct: 257 NVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIH 316

Query: 498 -EKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            E  V P+  T+ S++ GLC+   ++ AF+V
Sbjct: 317 GETMVEPNVVTFNSVIHGLCKTGRMRQAFQV 347



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           SY  ++  LC   R  +A G++++M+  G+ PDV  Y +L+   C    +  A +L  +M
Sbjct: 115 SYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREM 174

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             SG   N+  Y+ L+  + + G  E   ++F  M  +G+ PD   YT L++ LC+E  +
Sbjct: 175 CESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           + A +V +K +   +       +  + S+C+ G
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVLINSMCKEG 267



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 20/234 (8%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           PR A  F   ++ +GR    + L+ L + +        L E   +LS+     D  SYN 
Sbjct: 31  PRRAAPFLAVLLRRGRAEASARLNRLLRLV-------PLPESPALLSSLPSVRDAVSYNT 83

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           +++ LC  G   +A   +  +      P    Y +LM A C E     A  L   M ASG
Sbjct: 84  VLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASG 143

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              ++ TY  LI    +  +++ A+ L   M E G+ P+   Y+ LL+G C+    +   
Sbjct: 144 VRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVS 203

Query: 526 EVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDL 570
           +VF     + +  DV++   ++     SLCR G    AT+++     RGL  ++
Sbjct: 204 KVFEEMSGRGIEPDVVMYTGLID----SLCREGKVKKATQVMDKMMERGLEPNV 253


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 162/356 (45%), Gaps = 38/356 (10%)

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
           R  +PD   Y  +      +G       + KK  + G  P    Y   I  L  +RR+ E
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           A ++                                  F++M  KG  P + T ++L + 
Sbjct: 64  ALDI----------------------------------FSYMKAKGISPNIFTYNSLIQG 89

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
           LC  ++  E   +   + + +   ++ +++++++  C  G + EA GV++ M   G++P+
Sbjct: 90  LCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN 149

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y+SLM     +  +  A+KL+D M   GC  ++ +YNILI+ + +   I  A +LF+
Sbjct: 150 VVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFN 209

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M+ +G+ PD  +Y +L++GLCQ   L+ A ++F   + +  +      S  +   C++G
Sbjct: 210 EMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 269

Query: 555 HFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK--WIQESSPTM 606
           +   A +L R + S     +   + IL+ ++  +R ++ A +     ++Q   P M
Sbjct: 270 YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 155/322 (48%), Gaps = 10/322 (3%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-L 231
           A  +F +M   G +   + +   I   C++ ++ + L +   ++ +    I+ ++     
Sbjct: 29  AAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG---ISPNIFTYNS 85

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +I G C   R  EA  +L+E+      P+ + + ++   F   G+VFE   VLK   ++G
Sbjct: 86  LIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMG 145

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAI 350
           V P    Y   + G  ++  + EA++L +V+++     D    N LI G   +     A 
Sbjct: 146 VEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAK 205

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             FN MI +G  P + + + L   LC+  +  E  +++K +  N    D+ +Y++++   
Sbjct: 206 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF 265

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C  G L +A+ + + M+   L P++  YN L++A C+   L+ A+KL+ ++F  G   N+
Sbjct: 266 CKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325

Query: 471 KTYNILISKFSEVGEIEGALRL 492
           K +     K  E+ +   ALR+
Sbjct: 326 KHW-----KLFEIWKRMAALRM 342



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 9/304 (2%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II+G CK      A  +  ++    C+PD + Y  + +       V E   +    +  G
Sbjct: 16  IINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG 75

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           ++P    Y   I GL    R  EA  +   ++S     +    + LI    +I  +   V
Sbjct: 76  ISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI----NIFCKEGNV 131

Query: 352 F-----FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           F        M E G  P + T S+L      + +  E  +++ V+       D+ SYN++
Sbjct: 132 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNIL 191

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++  C + R+ EA  +  EM  +GL PD+  YN+L++  C+   LR A  L+  M  +G 
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 251

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             +L TY+IL+  F + G +  A RLF  M    + P+   Y  L++ +C+  NL+ A +
Sbjct: 252 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 311

Query: 527 VFNK 530
           +F++
Sbjct: 312 LFSE 315



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ +G  P + T + +   LCK  ++     ++K +       D+ +Y+ ++  LC   R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + EA  +   MK KG+ P++  YNSL++  C     R A  + ++M +     N+ T+++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI+ F + G +  A  +   M E GV P+  TY+SL+ G     +LQA  EVF      D
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY----SLQA--EVFEARKLFD 174

Query: 536 VMLARS 541
           VM+ + 
Sbjct: 175 VMITKG 180



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M  +G  PDV  Y +++   C+      A  L+ +M  +GC  ++ TY+ +I    +   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
           +  AL +F  M  KG++P+  TY SL++GLC  +  + A  + N+ ++ ++M      S 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
            +   C+ G+   A  +L+ + +++G  + +V+   SL +   ++  +
Sbjct: 121 LINIFCKEGNVFEARGVLKTM-TEMG-VEPNVVTYSSLMNGYSLQAEV 166



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 42/288 (14%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           A  QP+     ++Y +I+ SL   R++N    +   +K   I+ +   Y  +I  L    
Sbjct: 39  AGCQPDV----VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFS 94

Query: 134 NTQKAFSVFNE----------VKFN------CED-----------------IGPEIC--N 158
             ++A ++ NE          V F+      C++                 + P +   +
Sbjct: 95  RWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYS 154

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL+   +    +  A K+FD M  +G +     + + I  +C+  ++G+   + +E+  +
Sbjct: 155 SLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ 214

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
              +    V    +I G C+  R+ EA  +   +      PD   Y I+ + F   G + 
Sbjct: 215 --GLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLA 272

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSG 325
           +   + +  +   + P    Y   I  +   R + EA++L  E+ V G
Sbjct: 273 KAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQG 320


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 187/417 (44%), Gaps = 48/417 (11%)

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVL 231
           A+ + D M  RG +     +G  +   C+   +   LS+L   +K E   I   V I   
Sbjct: 188 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL---KKMEKGKIEADVVIYTT 244

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           II   C  K V +A  +  E+  +  +P+ + Y  +       G   +   +L    +  
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351
           + P    +   I   + E ++ EA++L                                 
Sbjct: 305 INPNVVTFSALIDAFVKEGKLVEAEKL--------------------------------- 331

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            ++ MI++   P + T S+L    C  ++ DE   +++++ + D F ++ +YN ++   C
Sbjct: 332 -YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 390

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
            + R+ E   + +EM ++GL  +   YN+L++   +      A+K++ +M + G   ++ 
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN-- 529
           TY+IL+    + G++E AL +F  + +  + PD  TY  ++EG+C+   ++  +++F   
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 530 --KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKS 582
             K V  +V++  +++S F    CR+G    A  L R +  D  L +S ++  L+++
Sbjct: 511 SLKGVKPNVIIYTTMISGF----CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 563



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 5/365 (1%)

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
           VL K  KLG  P        + G    +RI EA  L + +   ++  +    N LI  + 
Sbjct: 121 VLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLF 180

Query: 343 SIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +  S A+   + M+ +G  P L T   +   LCKR   D  + + K +       D+ 
Sbjct: 181 LHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 240

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            Y  ++  LC    + +A  +  EM  KG+ P+V  YNSL+   C       A +L   M
Sbjct: 241 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 300

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
                + N+ T++ LI  F + G++  A +L+  M+++ + PD  TY+SL+ G C    L
Sbjct: 301 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 360

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
             A  +F   ++ D        +T +   C+        +L R +S    +G++ ++  L
Sbjct: 361 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 420

Query: 580 LKSLADAREVEMAIEHI-KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638
           ++ L  A + +MA +   K + +  P  +   S  L   L      E  L++   LQ+  
Sbjct: 421 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI-LLDGLCKYGKLEKALVVFEYLQKSK 479

Query: 639 LDSEI 643
           ++ +I
Sbjct: 480 MEPDI 484



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 95/203 (46%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M++   +P++   + L   + K NK D ++ + + +       D+ SYN++++
Sbjct: 48  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 107

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   +L  A  V+ +M + G +PD+   +SL+   C    +  A  L DQMF      
Sbjct: 108 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 167

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N  T+N LI       +   A+ L   M+ +G  PD  TY +++ GLC+  ++  A  + 
Sbjct: 168 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 227

Query: 529 NKSVNHDVMLARSILSTFMISLC 551
            K     +     I +T + +LC
Sbjct: 228 KKMEKGKIEADVVIYTTIIDALC 250



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 2/216 (0%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           LS+N+    K D+ V+++  +  +     +  +N ++S +    +      + + M+   
Sbjct: 35  LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 94

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           +  D+  YN L+   CR   L  A  +  +M   G   ++ T + L++ +     I  A+
Sbjct: 95  ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 154

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            L   M      P+  T+ +L+ GL        A  + ++ V            T +  L
Sbjct: 155 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 214

Query: 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA 586
           C+RG   +A  LL+ +    G  ++ V++  ++ DA
Sbjct: 215 CKRGDIDLALSLLKKMEK--GKIEADVVIYTTIIDA 248


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 194/449 (43%), Gaps = 36/449 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++   +      + D++ K+ K    +L+  +Y  II +  Q  N ++A  +  E
Sbjct: 335 VTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVRE 394

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++ +  D   ++ +S++         +  L +F+ +   G + S I +G  +  + +  K
Sbjct: 395 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 454

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + LS+  E+      + + +    ++I+GF        AF + +E+     +PD   Y
Sbjct: 455 VAKALSISKEMES--CGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 512

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ E F  MG++     +L+K +K  + P    +R  I G  V                
Sbjct: 513 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV---------------- 556

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                             + D +SA+   + M   G VPT+ T + L   L +++K    
Sbjct: 557 ------------------AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 598

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V V   +S      +  +Y +++     SG + +A+    ++K  GL  DV  Y +L+ A
Sbjct: 599 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 658

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC+   ++ A  +  +M       N   YNILI  ++  G++  A  L   M E GV P+
Sbjct: 659 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPN 718

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             TYTS +   C+  ++Q A +V  + V+
Sbjct: 719 IHTYTSYINACCKAGDMQRAEKVIEEMVD 747



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 177/416 (42%), Gaps = 5/416 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    +  AL   +EM   G+E + + + + I  F +        ++  E 
Sbjct: 301 VFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA 360

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + + +S+ NG +I   IIH  C+   +E A +++ E+           Y  +   + ++ 
Sbjct: 361 KTKLSSL-NG-IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQ 418

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVL 334
           +  +  VV ++ ++ G  P    Y   +L L V+  ++ +A  + + + S     ++   
Sbjct: 419 NENKCLVVFERLKECGFKPSIISY-GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTY 477

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           + LI G +   D  +A   F  M+  G  P  +  + L +  CK    D  + + + +  
Sbjct: 478 SMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQK 537

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                   ++  ++     +G ++ A   +  M+R G  P V  YN+L+    R+  ++ 
Sbjct: 538 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 597

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + D+M  +G + N  TY I++  ++  G+I  A   F  + E G+  D   Y +LL 
Sbjct: 598 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 657

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             C+   +Q+A  V  +     +     I +  +    RRG    A  L++ +  D
Sbjct: 658 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 713



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/444 (19%), Positives = 178/444 (40%), Gaps = 61/444 (13%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F  S +SY  +L       ++    S+ K+++   I  ++  Y  +I   I   +   A
Sbjct: 434 GFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANA 493

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           F++F E+  +       I N L+      G +D A+ + ++M    ++ S   F   I  
Sbjct: 494 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 553

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRI 254
           +     +   L  LD +R+      +G V  V+    +IHG  +  +V+ A  VLD++ I
Sbjct: 554 YAVAGDMKSALDTLDLMRR------SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 607

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+   Y I+   +   G + +      K ++ G+      Y   +      R  C+
Sbjct: 608 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLL------RACCK 661

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +  +   +   +             S   I PR+  + +N +I+                
Sbjct: 662 SGRMQSALAVTREM-----------SFQKI-PRNTFI-YNILID---------------G 693

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             +R    E  ++ K +  +    ++ +Y   ++  C +G ++ A  VI+EM   GL P+
Sbjct: 694 WARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 753

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L++   R  L   A K +++M  +G   +  +Y+ L++                
Sbjct: 754 VKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT---------------- 797

Query: 495 NMLEKGVAPDATTYTSLLEGLCQE 518
           ++L +    + +TYT ++  +C+E
Sbjct: 798 SLLSRATVMEGSTYTGII-SVCRE 820



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           + +M+ +    G    A    + M+ +G++P+   + SL+ A      +R A    ++M 
Sbjct: 267 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 326

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + G    + TY+ILIS F+++ + + A  LF     K  + +   Y++++   CQ  N++
Sbjct: 327 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 386

Query: 523 AAFEV 527
            A E+
Sbjct: 387 RAEEL 391



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 53/116 (45%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+  ++ M A G   N   +  L+  ++   ++ GAL     M  +G+     TY+ L+ 
Sbjct: 283 ARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILIS 342

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           G  +  + Q+A  +F ++      L   I S  + + C+ G+   A +L+R +  D
Sbjct: 343 GFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEED 398


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 191/424 (45%), Gaps = 35/424 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A L   G   +ALK+FDEM   GV  + I +   I    +   L          R 
Sbjct: 198 NVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGF------RL 251

Query: 218 RENSMINGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE---- 269
           R+  + +G     V   +++ G C+  R++E   ++DE+      PD   Y I+ +    
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 270 --EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSG 325
             E + M S+F     LKK   LG       Y   IL  GL  + ++ +A+++ E++V  
Sbjct: 312 TGESRTMLSLFAES--LKKGVMLGA------YTCSILLNGLCKDGKVAKAEQVLEMLVHT 363

Query: 326 KFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                  + N LI     + D R A   F  M  +   P   T + L   LCK     + 
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++   +  +     +E++N ++    T+G+L + + V+ +M++KG+  DV  + S+++A
Sbjct: 424 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  A  + D M     + N + YN +I  + E G+ E A  L   M   GV+  
Sbjct: 484 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSAS 543

Query: 505 ATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
             TY  LL+GLC+ + +  A E+     N+ +  DV+   +I+S    + C +G    A 
Sbjct: 544 IVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS----ACCNKGDTDKAL 599

Query: 561 KLLR 564
           +LL+
Sbjct: 600 ELLQ 603



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 194/447 (43%), Gaps = 11/447 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL  L   G   +    F  +   G    T  +   +        L   L+M+  + 
Sbjct: 125 CNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMG 184

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           + E +    +    ++I G  +  +  +A KV DE+      P++I Y  + +   + G 
Sbjct: 185 RSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG-HVKGG 243

Query: 277 VFEREVVLKKKR-KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
             E    L+ +    G  P    Y   + GL    R+ E + L + + S     D    +
Sbjct: 244 DLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYS 303

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L  G   + + R+ +  F   ++KG +    T S L   LCK  K  +  +V ++L   
Sbjct: 304 ILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 363

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                   YN +++  C    LR A+ + ++MK + + PD   YN+L+   C+ +++  A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           + L  +M  SG   +++T+N LI  +   G++E    +  +M +KG+  D  ++ S+++ 
Sbjct: 424 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483

Query: 515 LCQETNLQAAFEVFNKSVNHDV----MLARSILSTFMISLCRRGHFLVATKLLR-GLSSD 569
            C+   +  A  + +  +  DV     +  SI+  ++ S      FL+  K+   G+S+ 
Sbjct: 484 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSAS 543

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHI 596
           +    ++ +LLK L  + +++ A E I
Sbjct: 544 IV---TYNLLLKGLCRSSQIDEAEELI 567



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/431 (20%), Positives = 183/431 (42%), Gaps = 7/431 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++Y+ +L  L  + +++    ++ ++  + +  D   Y  +   L +   ++
Sbjct: 261 KPNI----VTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESR 316

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
              S+F E       +G   C+ LL  L  DG +  A ++ + + H G+  +T+ +   I
Sbjct: 317 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 376

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             +C+   L     + ++++ R   +    +    +I+G CK + V +A  ++ E+    
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRH--IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 434

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P    +  + + +   G + +   VL   ++ G+      +   +       +I EA 
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 317 ELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            + + ++      +  V N++I + + S D   A +    M   G   ++ T + L K L
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+ ++ DE  E+   L       D+ SYN ++S  C  G   +A  ++QEM + G+ P +
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y++L+ A      +   + L+ QM       +   Y I++  +           L   
Sbjct: 615 RTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKE 674

Query: 496 MLEKGVAPDAT 506
           M EKG+A D T
Sbjct: 675 MSEKGIAFDDT 685



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 160/357 (44%), Gaps = 21/357 (5%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMINGSVIAV 230
           L +F E   +GV        + +   C++ K+    QVL ML         ++  +VI  
Sbjct: 319 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML-----VHTGLVPTTVIYN 373

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G+C+ + +  AF + ++++ R  +PD I Y  +      +  V + E ++ +  K 
Sbjct: 374 TLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKS 433

Query: 291 GVAPRTNDYREFI--LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
           GV P    +   I   G   +   C    L ++   G   I  DV++   GSV     ++
Sbjct: 434 GVDPSVETFNTLIDAYGTAGQLEKC-FTVLSDMQQKG---IKSDVIS--FGSVVKAFCKN 487

Query: 349 -----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+   + MI K   P     +++     +   +++   + + +  +     + +Y
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 547

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+++  LC S ++ EA  +I  ++ +GL PDV  YN+++ ACC +     A +L  +M  
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            G    L+TY+ L+S  +  G +     L+  ML K V P ++ Y  +++   +  N
Sbjct: 608 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 664



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P+LS+ + L ++L    +  ++   + +L A     D  ++N +V     +G L  A  
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 422 VIQEMKR-KGLDPDVSF-YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           +++ M R +G  P  +F YN ++    R      A K++D+M   G   N  TYN +I  
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ---------AAFEVFNK 530
             + G++E   RL   ML  G  P+  TY  LL GLC+   +          A+  +F  
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 531 SVNHDVML--------ARSILSTFMISLCRRGHFLVA---TKLLRGLSSD 569
              + ++         +R++LS F  SL ++G  L A   + LL GL  D
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESL-KKGVMLGAYTCSILLNGLCKD 347



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 63/142 (44%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QQ       +S+ S++K+   + +I    ++L  +    +  ++ VY  II + I+  +T
Sbjct: 466 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 525

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++AF +  ++K +         N LL  L     ID A ++   + ++G+    + +   
Sbjct: 526 EQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTI 585

Query: 196 IWKFCENAKLGQVLSMLDEVRK 217
           I   C      + L +L E+ K
Sbjct: 586 ISACCNKGDTDKALELLQEMNK 607


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/523 (20%), Positives = 210/523 (40%), Gaps = 50/523 (9%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +AL F  WA   P F H    Y     +L  ++ +   + V++ + +N            
Sbjct: 116 VALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMN------------ 163

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
                +    ++A ++  E++        +  N +L V    G ++ A  MF EM  RGV
Sbjct: 164 ---FAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGV 220

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-------------- 231
               + F + +   C   ++ +    L+ + +R   + N +   ++              
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280

Query: 232 -------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                              +I+G CK   +++AF++L+E+  R  KP+   +  + +   
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340

Query: 273 LMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             G   +   + LK  R  G  P  + Y   I G   E ++  A+ L   +       + 
Sbjct: 341 KKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNT 400

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
           +    LI G     +   A    + M ++G  P + T + +   LCK+   DE   +   
Sbjct: 401 NTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK 460

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           +S +    D  +Y +++S  C       +     +M + G  PD+  Y +L+   CR+  
Sbjct: 461 VSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQ 520

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           ++ +++L+++  + G     KTY  +I  +   G    A++LF  M   G APD+ TY +
Sbjct: 521 MKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGA 580

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           L+ GLC+E+ L  A  +++  ++  +        T     C++
Sbjct: 581 LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKK 623



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 163/378 (43%), Gaps = 8/378 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  ++      GY++  +  F +M   G+  + I F   I   C+   + Q   +L+E+ 
Sbjct: 262 CTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMV 321

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMG 275
           +R             +I G CK    E+AF++  +L R    KP+   Y  +   +    
Sbjct: 322 RR--GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E++L + ++ G+ P TN Y   I G         A EL +++    F+ +    N
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYN 439

Query: 336 ALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
           A+I  +    S+D   A    N +   G      T + L    C++  ++  +  +  + 
Sbjct: 440 AIIDGLCKKGSLD--EAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
              +  D+ SY  ++S  C   +++E+  + +E    GL P    Y S++   CR     
Sbjct: 498 KVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTS 557

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A KL+ +M   GC+ +  TY  LIS   +  +++ A  L+  M++KG++P   T  +L 
Sbjct: 558 LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLA 617

Query: 513 EGLCQETNLQAAFEVFNK 530
              C++ +   A  V ++
Sbjct: 618 YEYCKKDDSSTAINVLDR 635


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 36/361 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G + +A  +FDEM  RGV  + + F   I   C    L    ++    R 
Sbjct: 244 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL--HRRM 301

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +         +I G C+  R+E+A  V +++  R  KP+ + + I+ +     G  
Sbjct: 302 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 361

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                + ++ R+ GV P    Y   + GL      C A++L                   
Sbjct: 362 ETMLELHREMRERGVRPDAVTYNAIVNGL------CRARDL------------------- 396

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                    +SA      M   G  P   T + L    CK  + D  +E+ + + A    
Sbjct: 397 ---------KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVG 447

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  +Y  ++S L  +GR  +A  V+ EM   GL+PD + Y  +++A CR+  ++   +L
Sbjct: 448 LDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRL 507

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             +M   G    + TYN++++ F ++G+++ A  L + M+  GV+PD  TY  LL+G C+
Sbjct: 508 LKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK 567

Query: 518 E 518
            
Sbjct: 568 H 568



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  V DE++ R  +   +++  +       G +   E + ++  + GV P    Y   I 
Sbjct: 259 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ 318

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           GL    RI +A+ +                                  F  M  +G  P 
Sbjct: 319 GLCRVGRIEDARGV----------------------------------FEKMCGRGMKPN 344

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
               + L    CK+  ++ ++E+++ +       D  +YN +V+ LC +  L+ A G++ 
Sbjct: 345 AVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV 404

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM+  GL PD   Y +L++  C+E+ L  A ++   M A G   +  TY  LIS  S+ G
Sbjct: 405 EMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 464

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
               A R+   M+E G+ PD TTYT +++  C++ +++    +  +  N          +
Sbjct: 465 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 524

Query: 545 TFMISLCRRGHFLVATKLLRGL 566
             M   C+ G    A  LL  +
Sbjct: 525 VIMNGFCKLGQMKNADMLLNAM 546



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A  F+  +++ G  P     + L ++L +  +      V+  + +      + S+N M+S
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            +C +G L  A  + + M   G+ PDV  Y +L++  CR   +  A+ ++++M   G   
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 343

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           N   + ILI    + G+ E  L L   M E+GV PDA TY +++ GLC+  +L++A
Sbjct: 344 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 399



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA     ++   GL P+   +N LM    R   L  A+ ++D+M + G    + ++N +I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
           S     G+++GA  L   M E GV PD  TY +L++GLC+   ++ A  VF K     + 
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 538 LARSILSTFMISLCRRG 554
               + +  + + C++G
Sbjct: 343 PNAVVFTILIDAHCKKG 359



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 102/240 (42%), Gaps = 17/240 (7%)

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
           ++++   +  D+  Y  I+  L + ++ + A  +  E++     + P+       +   D
Sbjct: 369 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR--SAGLRPDTVTYTTLI---D 423

Query: 168 GY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           GY     +D A+++   M   GV    + +   I    +  +      +L E+   E  +
Sbjct: 424 GYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM--EAGL 481

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +    ++I  FC+   V+   ++L E++ +  KP  + Y ++   F  +G +   ++
Sbjct: 482 EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADM 541

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD-DVLNALIGSV 341
           +L     +GV+P    Y   + G     ++ + +EL     S K T+ D  V  +++G +
Sbjct: 542 LLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELK----SAKGTVPDLGVYTSIVGEI 597


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 197/460 (42%), Gaps = 17/460 (3%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
           K  +    Y F++ SL +     +A  VF  +K   E   P +   N L+    + G   
Sbjct: 5   KCAIGGDAYDFVVQSLAKAGMLAQALEVFETMK--SESCVPSLVTYNVLINSRCNAGEFG 62

Query: 172 NALKMFDEMS-HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE---NSMINGSV 227
            AL +F  M   + VE     +   I   C +        +L E+R +    N     S+
Sbjct: 63  KALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSI 122

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           I  L+     K  + EE++KVL+E+    C PD  A+  V + F    ++ +   V +  
Sbjct: 123 IKSLV-----KEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 177

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEA-KELGEVIVSGKFTIDDDV-LNALI-GSVSSI 344
            + G  P    Y   I GL    ++ E+ K L E+ +     + + +  + LI G   + 
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           +   A+  F  M+E G  P   T + L   LC+  K  +  E+++ ++      D  +YN
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYN 297

Query: 405 VMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            +++  C  G + EA  + +EM    GL P +  +N+L++  C+   L  A +L  +M  
Sbjct: 298 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT 357

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G + +  TY ILI+  S   +++ AL ++  M EK    D  +  S + GLC+  N+  
Sbjct: 358 KGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQ 417

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           A+ VF  +     +           SL + G    A KL+
Sbjct: 418 AYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 147/364 (40%), Gaps = 48/364 (13%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSVFEREVVL 284
            ++    K   + +A +V + ++   C P  + Y ++      A EF     +F+     
Sbjct: 15  FVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQ----- 69

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
             KR+  V P    Y   I GL                                   SS 
Sbjct: 70  SMKREKRVEPDRWTYNTLISGL----------------------------------CSSG 95

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           +   A    + M +K     + T S++ K+L K  K +E  +V + + A     D+ ++N
Sbjct: 96  NTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFN 155

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-- 462
            ++     S  + +A  V Q M   G  PD   Y+ L+    +   L  + K+  +M   
Sbjct: 156 GVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMR 215

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           A+G   N+ T++ LI      GE+E AL +F +MLE G  P+  TYT+L+ GLC+   + 
Sbjct: 216 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVI 275

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKS 582
            A E+F K     +       ++ +   C+RG    A KL R +S   G   + ++   +
Sbjct: 276 QARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT-IVTFNT 334

Query: 583 LADA 586
           L D 
Sbjct: 335 LIDG 338



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 159/398 (39%), Gaps = 8/398 (2%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  F    ++        +Y++++  L  S        +L +++   I  +   Y  II
Sbjct: 64  ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII 123

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
            SL++    ++++ V  E+        P++   N ++   A    ++ A +++  M   G
Sbjct: 124 KSLVKEAKPEESYKVLEEMM--AAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
            +   + + + I    +  KL + L +L E+  R    +   +    +IHG C+   +E+
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEK 241

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A +V   +    CKP+   Y  +         V +   + +K  +  + P    Y   I 
Sbjct: 242 ALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 301

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDPRS-AIVFFNFMIEKGR 361
           G      + EA++L   + SG   +   ++  N LI     +     A      M  KG 
Sbjct: 302 GYCKRGSMDEAEKLYREM-SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
                T   L   L +  K DE +EVYK +    +  D  S    V  LC +G + +AY 
Sbjct: 361 AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYA 420

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           V +  ++ G  P+   +  L E+  +   +  A+KL +
Sbjct: 421 VFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 212/496 (42%), Gaps = 55/496 (11%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLL 161
           SVL +V       D++ +  +I  L ++GK ++    V   V+  C+   P++   NS++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQ---PDMVTYNSIV 200

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
             +   G    A  M  +M  R V+     +   I   C +  +   +S+  E+   E  
Sbjct: 201 NGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETK 257

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I  SV+    ++ G CK  +  +   +L ++  RE  P+ I + ++ + F   G + E 
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             + K+    G++P    Y   + G  ++ R+ EA  + +++V  K +            
Sbjct: 318 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------ 365

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                                 P + T ++L K  C   + D+ ++V++ +S      + 
Sbjct: 366 ----------------------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y+++V   C SG+++ A  + QEM   G+ PDV  Y  L++  C    L  A ++++ 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           +  S     +  Y  +I    + G++E A  LF ++  KGV P+  TYT ++ GLC++ +
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580
           L  A  +  K             +T + +  R G    + KL+  + S  G S       
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS-CGFS------- 575

Query: 581 KSLADAREVEMAIEHI 596
              ADA  ++M I+ +
Sbjct: 576 ---ADASSIKMVIDML 588



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 192/408 (47%), Gaps = 12/408 (2%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D+A+ +F EM         + F  F   F   A+  Q   +LD  ++ E + I  ++  +
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRF---FSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 231 -LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
            ++I+ FC+  +   A+ VL ++     +PD   +  +     L G V +  V++ +  +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVE 186

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV---SSIDP 346
            G  P    Y   + G+        A ++   +       D    + +I S+     ID 
Sbjct: 187 NGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID- 245

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
            +AI  F  M  KG   ++ T ++L + LCK  K ++   + K + + +   ++ ++NV+
Sbjct: 246 -AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G+L+EA  + +EM  +G+ P++  YN+LM+  C ++ L  A  + D M  + C
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S ++ T+  LI  +  V  ++  +++F N+ ++G+  +A TY+ L++G CQ   ++ A E
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS---DLG 571
           +F + V+H V+         +  LC  G    A ++   L     DLG
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 191/431 (44%), Gaps = 3/431 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           ++++++  L L  +++    ++ ++  N    D   Y  I+  + +  +T  AF +  ++
Sbjct: 160 TFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKM 219

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           +           ++++  L  DG ID A+ +F EM  +G++ S + +   +   C+  K 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                +L ++  RE  ++   +   +++  F K  +++EA ++  E+  R   P+ I Y 
Sbjct: 280 NDGALLLKDMVSRE--IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYN 337

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            + + + +   + E   +L    +   +P    +   I G  + +R+ +  ++   I   
Sbjct: 338 TLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 397

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               +    + L+ G   S   + A   F  M+  G +P + T   L   LC   K ++ 
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           +E+++ L  +     +  Y  ++  +C  G++ +A+ +   +  KG+ P+V  Y  ++  
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 517

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C++  L  A  L  +M   G + N  TYN LI      G++  + +L   M   G + D
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577

Query: 505 ATTYTSLLEGL 515
           A++   +++ L
Sbjct: 578 ASSIKMVIDML 588



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 108/229 (47%)

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
            +  I    AI  F  MI    +P L   S     + +  + + +++  K L  N    +
Sbjct: 63  GIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHN 122

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + + N+M++  C   +   AY V+ ++ + G +PD + +N+L+   C E  +  A  L D
Sbjct: 123 IYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVD 182

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
           +M  +GC  ++ TYN +++     G+   A  +   M E+ V  D  TY+++++ LC++ 
Sbjct: 183 RMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
            + AA  +F +     +  +    ++ +  LC+ G +     LL+ + S
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 13/295 (4%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWAS-QQPNFTH--------SP--LSYHSILKSLS 95
           L   +V+R I P ++T + L   F      Q+ N  +        SP  ++Y++++    
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155
           +  +++  +++L  +  NK + D   +  +I      K       VF  +          
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
             + L+      G I  A ++F EM   GV    + +G+ +   C+N KL + L + +++
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           +K +  +  G V+   II G CKG +VE+A+ +   L  +  KP+ + Y ++       G
Sbjct: 465 QKSKMDL--GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330
           S+ E  ++L+K  + G AP    Y   I   + +  +  + +L E + S  F+ D
Sbjct: 523 SLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 230/506 (45%), Gaps = 39/506 (7%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA--KLGQVLSMLDEV 215
           ++L+  +  +G + +AL++FD+M+  G +   + +G  I     NA  K  Q    ++  
Sbjct: 13  STLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLI-----NALRKTRQARRAVELH 67

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           R+  + + +G+     L+I   CK     +  K+  E+      P+ I Y  +      +
Sbjct: 68  RRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRV 127

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFI-----LGLIVERRICEAKELGEVIVSGKFTI 329
           G + E   +  +    G+      Y   I      GL  E     ++ +GE I+      
Sbjct: 128 GKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP----- 182

Query: 330 DDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D      LI  +S     + A   F  MI++G  P + T ++L   LC  ++ D  V ++
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
           +V+       D+ SYN +++  CTSG+  EA  + ++M+ + L P ++ Y  L++A  + 
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             +R AK+L++ M   G S +L TY +L+    + G IE A+ +F ++      P    Y
Sbjct: 303 GRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIY 362

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS-TFMIS-LCRRGHFLVATKLLRGL 566
           + L+ G+ Q    ++A E+F++     V L  +I++   MI+ LC+ G  L A +L   +
Sbjct: 363 SILIGGMFQARRWESAMEIFDEI--PTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQM 420

Query: 567 SSDLGHSD--SHVILLKSLADAREVEMAIEHIKWIQES--SPT-----MLQEISAELFAS 617
                  D  S   +++      +V+ A+E +K ++E   SP      ML  + A   A 
Sbjct: 421 EESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYA---AD 477

Query: 618 LSSSSYPEPILLLLHAL-QEKCLDSE 642
             SS  P      LH L Q+K L ++
Sbjct: 478 AQSSELPNN---FLHELVQKKTLKTQ 500



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%)

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
           Y  ++ + + +V  +C  G++ +A  +  +M R G   D+  Y  L+ A  +    R A 
Sbjct: 5   YQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAV 64

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L  +M +  CSGN  TY ++I    + G     L++F  M+  G+ P+   Y+SL+ GL
Sbjct: 65  ELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGL 124

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           C+   L+ A  +F++ V+  +       ++ + + CR G +  AT+
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATR 170



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 99/207 (47%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           ++ G  P L T+S L K +C   K  + +E++  ++ + +  D+  Y  +++ L  + + 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           R A  + + M  +    +   Y  ++++ C++ L     K++ +M   G   N+  Y+ L
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I+    VG++  A+ LF  M+ +G+  +  TY SL+   C+    + A   F++ V   +
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGI 180

Query: 537 MLARSILSTFMISLCRRGHFLVATKLL 563
           +      +T +  L ++G    A K+ 
Sbjct: 181 LPDVVTFTTLIDHLSKKGKVQEAYKIF 207


>gi|255583659|ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527693|gb|EEF29801.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 895

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 220/509 (43%), Gaps = 35/509 (6%)

Query: 35  EQTLHQLGLRDSLSPSLVARVINPYLLTHHSLA-LGFFNWASQQPNFTHSPLSYHSILKS 93
           E  L QLGLR  L+ SLV  V++        L+ L FF+WA +Q  F H+  ++H+I K 
Sbjct: 106 ELALSQLGLR--LTESLVLDVLHYGNSKKDVLSCLKFFDWAGRQSGFYHTRATFHAIFKI 163

Query: 94  LSLSR----QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           LS ++     ++ +D+ +K    N   L    Y  +I         Q A  +F +++F  
Sbjct: 164 LSKAKLMQLMLDFLDNYMKHRFANH-KLGYGFYSTLIMGYSVAGKPQVALQLFGKMRFLG 222

Query: 150 EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209
            D+     + LL  L  +   D    +  ++S RG E S I   + +  FC+        
Sbjct: 223 RDLDAFAYHILLNSLVEECCFDAVDDIAKQISIRGFE-SHITHSIVVKSFCKQ------- 274

Query: 210 SMLDEVRKRENSMI------NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            MLDE       MI      NG+ + +L +  FC+  + E+A ++++E R     P + A
Sbjct: 275 RMLDEAEAYLRRMILQGESGNGAAVGIL-VGAFCQKGQFEKAGQLIEEFRELRVVPLYPA 333

Query: 264 Y----RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           Y    R + ++ KL G++   +   +KK      P    Y   +  L+ E R+ EA +L 
Sbjct: 334 YGVWLRNLVQKGKLDGAL---DFFQQKKTLESYVPEIFHYNALLCRLLKENRLTEACDLL 390

Query: 320 EVIVSGKFTIDDDVLNALIG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             ++   F+ D   +NA +        +D   A+  +N   E G  P+  T + L  +LC
Sbjct: 391 MEMMEDGFSPDKVTMNAALSFFCKAGMVD--VALDLYNCKSEFGLSPSTMTCNYLINSLC 448

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           +    D+   V K  S + YF    +++++   L   G++     +      +   P  S
Sbjct: 449 REGNVDDAYHVLKSSSEHGYFPGKRAFSMLTDALHREGKVEMMNELFFWALERNFIPSDS 508

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y+  + A C+   L     +  ++          TY+ LI  F++    + A RL   M
Sbjct: 509 MYDKFISALCKARRLEDGYLIHGELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARLLIEM 568

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAF 525
            +KG  P  T + +++  LC+  + +  F
Sbjct: 569 QDKGHLPARTLFRAVIRSLCEMDDPETRF 597



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 165/426 (38%), Gaps = 48/426 (11%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV-LSMLDEVRKRE--NSMINGSVIAV 230
           LK FD    +   + T      I+K    AKL Q+ L  LD   K    N  +     + 
Sbjct: 138 LKFFDWAGRQSGFYHTRATFHAIFKILSKAKLMQLMLDFLDNYMKHRFANHKLGYGFYST 197

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           LI+ G+    + + A ++  ++R      D  AY I      L+ S+ E E        +
Sbjct: 198 LIM-GYSVAGKPQVALQLFGKMRFLGRDLDAFAYHI------LLNSLVE-ECCFDAVDDI 249

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
                   +   I   IV +  C+ + L E                            A 
Sbjct: 250 AKQISIRGFESHITHSIVVKSFCKQRMLDE----------------------------AE 281

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRN---KSDELVEVYKVLSANDYFTDMESYNVMV 407
            +   MI +G     + +  L    C++    K+ +L+E ++ L     +    +Y V +
Sbjct: 282 AYLRRMILQGESGNGAAVGILVGAFCQKGQFEKAGQLIEEFRELRVVPLYP---AYGVWL 338

Query: 408 SFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
             L   G+L  A    Q+ K  +   P++  YN+L+    +E+ L  A  L  +M   G 
Sbjct: 339 RNLVQKGKLDGALDFFQQKKTLESYVPEIFHYNALLCRLLKENRLTEACDLLMEMMEDGF 398

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S +  T N  +S F + G ++ AL L++   E G++P   T   L+  LC+E N+  A+ 
Sbjct: 399 SPDKVTMNAALSFFCKAGMVDVALDLYNCKSEFGLSPSTMTCNYLINSLCREGNVDDAYH 458

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-LRGLSSDLGHSDS-HVILLKSLA 584
           V   S  H     +   S    +L R G   +  +L    L  +   SDS +   + +L 
Sbjct: 459 VLKSSSEHGYFPGKRAFSMLTDALHREGKVEMMNELFFWALERNFIPSDSMYDKFISALC 518

Query: 585 DAREVE 590
            AR +E
Sbjct: 519 KARRLE 524



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 92/525 (17%), Positives = 188/525 (35%), Gaps = 53/525 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +YH +L SL      +A+D + KQ+ +         +  ++ S  + +   +A +    
Sbjct: 228 FAYHILLNSLVEECCFDAVDDIAKQISIRGFE-SHITHSIVVKSFCKQRMLDEAEAYLRR 286

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +    E         L+      G  + A ++ +E     V      +GV++    +  K
Sbjct: 287 MILQGESGNGAAVGILVGAFCQKGQFEKAGQLIEEFRELRVVPLYPAYGVWLRNLVQKGK 346

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           L   L    + +  E+ +        L+     K  R+ EA  +L E+      PD +  
Sbjct: 347 LDGALDFFQQKKTLESYVPEIFHYNALLCR-LLKENRLTEACDLLMEMMEDGFSPDKVTM 405

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA-------KE 317
                 F   G V     +   K + G++P T      I  L  E  + +A        E
Sbjct: 406 NAALSFFCKAGMVDVALDLYNCKSEFGLSPSTMTCNYLINSLCREGNVDDAYHVLKSSSE 465

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            G       F++  D L+   G V  ++       F + +E+  +P+ S        LCK
Sbjct: 466 HGYFPGKRAFSMLTDALHRE-GKVEMMNE-----LFFWALERNFIPSDSMYDKFISALCK 519

Query: 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
             + ++   ++  L+  +      +Y+ ++       R   A  ++ EM+ KG  P  + 
Sbjct: 520 ARRLEDGYLIHGELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARLLIEMQDKGHLPARTL 579

Query: 438 YNSLMEACCREDLLRPAKKLWD--QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           + +++ + C  D   P  + ++   M  S    N + YN  I       + + A ++F  
Sbjct: 580 FRAVIRSLCEMD--DPETRFFNYLDMQLSRRDPNCQIYNFFIDGAGHAKKPDIARKVFEM 637

Query: 496 MLEKGVAPDATT----------------------------------YTSLLEGLCQETNL 521
           M   G+ P+ +T                                  Y +++ GLC+   +
Sbjct: 638 MQRSGIEPNQSTNILMLQSYLKSERISDALNFFDAVGQRRKIGRKLYNTMVVGLCKVNKV 697

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            +A   F +  ++ ++ +       ++ LC    +  A  L+  L
Sbjct: 698 DSALSFFLEMQSNGMVPSVECYEVLIMLLCSNKRYSTAITLITDL 742



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 172/442 (38%), Gaps = 51/442 (11%)

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
           ++I SL +  N   A+ V      +    G    + L   L  +G ++   ++F     R
Sbjct: 442 YLINSLCREGNVDDAYHVLKSSSEHGYFPGKRAFSMLTDALHREGKVEMMNELFFWALER 501

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
               S   +  FI   C+  +L     +  E+  R N +   S  + LI HGF K  R +
Sbjct: 502 NFIPSDSMYDKFISALCKARRLEDGYLIHGEL-NRFNRVAKKSTYSNLI-HGFNKFNRGD 559

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMG---SVFEREVVLKKKRKLGVAPRTNDYR 300
            A ++L E++ +   P    +R V      M    + F   + ++  R+    P    Y 
Sbjct: 560 IAARLLIEMQDKGHLPARTLFRAVIRSLCEMDDPETRFFNYLDMQLSRR---DPNCQIYN 616

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEK 359
            FI G    ++   A+++ E++       +      ++ S + S     A+ FF+ + ++
Sbjct: 617 FFIDGAGHAKKPDIARKVFEMMQRSGIEPNQSTNILMLQSYLKSERISDALNFFDAVGQR 676

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
            ++      + +   LCK NK D  +  +  + +N     +E Y V++  LC++ R   A
Sbjct: 677 RKIGR-KLYNTMVVGLCKVNKVDSALSFFLEMQSNGMVPSVECYEVLIMLLCSNKRYSTA 735

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM----------------FA 463
             +I ++++ G        N L+    + D L  A   W Q+                  
Sbjct: 736 ITLITDLEKFGRRVTSFIGNILLLHSLKSDELYDA---WLQVREVQNETSLNLLILGQII 792

Query: 464 SGCSGNLK---------------------TYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              +G LK                     TYN+L+ + S +  I+ A  LF  + +KG  
Sbjct: 793 GAFAGRLKLSQQIDNLEEVIEQCFPLDLYTYNMLMRRLS-MSNIDHARELFDRICQKGYE 851

Query: 503 PDATTYTSLLEGLCQETNLQAA 524
           P+  TY  L+ GL +   +  A
Sbjct: 852 PNHWTYDILVHGLFKNGRIGEA 873



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 11/241 (4%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN + + L   S LKS  +S  +N  D+V ++ K+ +      +Y  ++  L +     
Sbjct: 644 EPNQSTNILMLQSYLKSERISDALNFFDAVGQRRKIGR-----KLYNTMVVGLCKVNKVD 698

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A S F E++ N      E    L+ +L S+     A+ +  ++   G   ++    + +
Sbjct: 699 SALSFFLEMQSNGMVPSVECYEVLIMLLCSNKRYSTAITLITDLEKFGRRVTSFIGNILL 758

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
                + K  ++     +VR+ +N      +I   II  F    ++ +    L+E+ I +
Sbjct: 759 ---LHSLKSDELYDAWLQVREVQNETSLNLLILGQIIGAFAGRLKLSQQIDNLEEV-IEQ 814

Query: 257 CKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315
           C P D   Y ++     +      RE+  +  +K G  P    Y   + GL    RI EA
Sbjct: 815 CFPLDLYTYNMLMRRLSMSNIDHARELFDRICQK-GYEPNHWTYDILVHGLFKNGRIGEA 873

Query: 316 K 316
           +
Sbjct: 874 R 874


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/529 (21%), Positives = 221/529 (41%), Gaps = 46/529 (8%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYR 123
           L LGF    +  +  F    +++  +LK L   ++  +A+D VL+++       +   Y 
Sbjct: 107 LDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN 166

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMS 181
            ++  L     +Q+A  +   +  +  D  P++ +  +++     +G +D A   + EM 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            RG+  + + +   I   C+   + + + +L  + K  N ++        I+HG+C   +
Sbjct: 227 DRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCRTYNSIVHGYCSSGQ 284

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
            +EA   L ++     +PD + Y  + +     G   E   +     K G+ P    Y  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIE 358
            + G   +  + E   L +++V      +  V + LI + +    +D   A++ F+ M +
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD--QAMLVFSKMRQ 402

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P   T   +   LCK  + ++ +  ++ +           YN ++  LC   +  +
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDK 462

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-------- 470
           A  +I EM  +G+  D  F+NS++++ C+E  +  ++KL+D M   G   N+        
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLID 522

Query: 471 ---------------------------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
                                       TYN LI+ + ++  +E AL LF  M   GV+P
Sbjct: 523 GYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSP 582

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           D  TY  +L+GL Q     AA E++         L  S  +  +  LC+
Sbjct: 583 DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 198/475 (41%), Gaps = 48/475 (10%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+SI+ +L  ++ ++    VL  +  N +  +   Y  I+         ++A      
Sbjct: 235 VTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK- 293

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            K + + + P++   NSL+  L  +G    A KMFD M+ RG++     +G  +  +   
Sbjct: 294 -KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L ++  +LD +  R     N  V ++LI   + K  +V++A  V  ++R +   PD +
Sbjct: 353 GALVEMHGLLD-LMVRNGIHPNHYVFSILIC-AYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  V       G V +     ++     ++P    Y   I  L +  +  +AKEL   +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 323 VSGKFTIDDDVLNALIGSVSS----IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           +     +D    N++I S       I+       F+ M+  G  P + T S L    C  
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEK---LFDLMVRIGVKPNIITYSTLIDGYCLA 527

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
            K DE  ++   + +     D  +YN +++  C   R+ +A  + +EM+  G+ PD+  Y
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASG---------------CSGNL------------- 470
           N +++   +      AK+L+  +  SG               C  NL             
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 471 -------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
                  +T+NI+I    +VG  + A  LF  +   G+ PD  TY+ + E L ++
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 186/436 (42%), Gaps = 15/436 (3%)

Query: 138 AFSVFNEV-KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194
           A S +N + +   +++ P +C    L+      G +D        +  +G     I F  
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLD 250
            +   C + +    +   D V +R   +  G +  V    +++ G C   R +EA ++L 
Sbjct: 132 LLKGLCADKRTSDAM---DIVLRRMTQL--GCIPNVFSYNILLKGLCDENRSQEALELLQ 186

Query: 251 ELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            +     +C PD ++Y  V   F   G + +      +    G+ P    Y   I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCK 246

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLST 367
            + + +A E+   +V      +    N+++ G  SS  P+ AI F   M   G  P + T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427
            ++L   LCK  +  E  +++  ++      ++ +Y  ++    T G L E +G++  M 
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487
           R G+ P+   ++ L+ A  ++  +  A  ++ +M   G + +  TY  +I    + G +E
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426

Query: 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
            A+R F  M+++ ++P    Y SL+  LC       A E+  + ++  + L     ++ +
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 548 ISLCRRGHFLVATKLL 563
            S C+ G  + + KL 
Sbjct: 487 DSHCKEGRVIESEKLF 502



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI---VFFNFMIEKGRVPTLSTLSNLSKN 374
           LG VI  G F +D      L+  + + D R++    +    M + G +P + + + L K 
Sbjct: 114 LGNVIKKG-FRVDAIAFTPLLKGLCA-DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 375 LCKRNKSDELVEVYKVL--SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432
           LC  N+S E +E+ +++     D   D+ SY  +++     G L +AYG   EM  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           P+V  YNS++ A C+   +  A ++   M  +G   N +TYN ++  +   G+ + A+  
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M   GV PD  TY SL++ LC+      A ++F+      +    +   T +     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
           +G  +    LL  +  +  H + +V  IL+ + A   +V+ A+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 189/435 (43%), Gaps = 15/435 (3%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y ++L+  +    +  +  +L  +  N I  +  V+  +I +  +     +A  VF+++
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +   + + P+     +++ +L   G +++A++ F++M    +    I +   I   C   
Sbjct: 401 RQ--QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 204 KLGQ----VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           K  +    +L MLD     +    N       II   CK  RV E+ K+ D +     KP
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNS------IIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           + I Y  + + + L G + E   +L     +G+ P    Y   I G     R+ +A  L 
Sbjct: 513 NIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
             + S   + D    N ++ G   +    +A   +  + E G    LST + +   LCK 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438
           N +DE + +++ L   D   +  ++N+M+  L   GR  EA  +   +   GL PDV  Y
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
           + + E    + LL     L+  M  +GC+ N +  N ++ K  + G+I  A      + E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 499 KGVAPDATTYTSLLE 513
           K  + +A+T +  L+
Sbjct: 753 KHFSLEASTASLFLD 767


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 149/322 (46%), Gaps = 7/322 (2%)

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            ++   VI  ++I GFC+   + +A +V DE+    C PD + Y  +         + + 
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-G 339
           E +L + R+ GV P    +   I G  +E ++ +A +L + +++ +   D    N LI G
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399
                D   A   ++ M  +   P   T S L  + C++ + ++       +       +
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 190

Query: 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459
           + +YN ++   C SG + +    +Q+M    + PD+  YN+L+    +ED +  A KL +
Sbjct: 191 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN 250

Query: 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519
            M       ++ TYN+LI+ FS  G ++ A  +F  M  KG+ PD  TY S++ G     
Sbjct: 251 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 310

Query: 520 NLQAAFEVFNKSVNHDVMLARS 541
           N + AF++      HD ML R 
Sbjct: 311 NSKEAFQL------HDEMLQRG 326



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 2/246 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G +P + T + L   LCK  +  +   +   +       D+ ++  ++   C  G+
Sbjct: 42  MVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK 101

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L +A  +   M  + L PD+  YN+L++  CR+  L  A  LWD M +     N  TY+I
Sbjct: 102 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI    E G++E A      M+ KG+ P+  TY S+++G C+  N+    +   K + + 
Sbjct: 162 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595
           V       +T +    +      A KLL  +  +    D  V+    L +   V   ++ 
Sbjct: 222 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD--VVTYNMLINGFSVHGNVQE 279

Query: 596 IKWIQE 601
             WI E
Sbjct: 280 AGWIFE 285



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 8/209 (3%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G VP     + +    C+     + + V   +       D+ +YN +++ LC   RL +A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
            G++ EM+ +G+ PD+  + +L+   C E  L  A +L+D M       ++ TYN LI  
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF----EVFNKSVNHD 535
               G+++ A  L+ +M  + + P+  TY+ L++  C++  ++ AF    E+ NK +  +
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 190

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLR 564
           +M   SI+  +    CR G+     K L+
Sbjct: 191 IMTYNSIIKGY----CRSGNVSKGQKFLQ 215



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           ++EM+  GL PD   Y  ++   CR  L+  A ++ D+M   GC  ++ TYN L++   +
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
              +  A  L + M E+GV PD  T+T+L+ G C E  L  A ++F+  +N  +      
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 543 LSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
            +T +  +CR+G    A  L   + S     +  ++ IL+ S  +  +VE A
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 175



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 140/337 (41%), Gaps = 9/337 (2%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLA 162
           + L++++   +  D  +Y  +I    +      A  V +E+   C  + P++   N+LL 
Sbjct: 2   AYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM-VGCGCL-PDVVTYNTLLN 59

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L  +  + +A  + +EM  RGV      F   I  +C   KL + L + D +    N  
Sbjct: 60  GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML---NQR 116

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           +   ++    +I G C+   +++A  + D++  RE  P+ + Y I+ +     G V +  
Sbjct: 117 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 176

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
             L +    G+ P    Y   I G      + + ++  + ++  K + D    N LI G 
Sbjct: 177 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 236

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           +       A    N M ++   P + T + L           E   +++ + A     D 
Sbjct: 237 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 296

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437
            +Y  M++   T+G  +EA+ +  EM ++G  PD  F
Sbjct: 297 YTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 39/283 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFN 143
           ++Y+++L  L   R++   + +L +++   +  D   +  +I    I+GK   KA  +F+
Sbjct: 52  VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFD 110

Query: 144 EVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +  N + + P+I   N+L+  +   G +D A  ++D+M  R +  + + + + I   CE
Sbjct: 111 TM-LN-QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 202 NAKLGQVLSMLDEVRKRE--------NSMINGS-------------------------VI 228
             ++      LDE+  +         NS+I G                          + 
Sbjct: 169 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 228

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +IHG+ K  ++ +AFK+L+ +   + +PD + Y ++   F + G+V E   + +K  
Sbjct: 229 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 288

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             G+ P    Y   I G +      EA +L + ++   F  DD
Sbjct: 289 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 331


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/515 (22%), Positives = 228/515 (44%), Gaps = 27/515 (5%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +++S++ + +      +++ VL +++  K  +    +  I  +  +    +KA  +F+ +
Sbjct: 62  TFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRM 121

Query: 146 --KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFS--TIGFGVFIWKFC 200
             +F C+       NS+L V+  +G    AL+ ++  +  +GV  S   + F + I   C
Sbjct: 122 AYEFECKRTVKSF-NSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMC 180

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              K+G V   +   R    S     V     ++ G CK  R++EA  +LDE++I  C P
Sbjct: 181 ---KVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFP 237

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
             + + ++       G +     ++      G AP    Y   I GL ++ ++ +A  L 
Sbjct: 238 SPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLL 297

Query: 320 EVIVSGKFTID----DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           + +VS K   +      ++N L+    ++D    +     M E+G        S L   L
Sbjct: 298 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLAL---MEERGYHVNEYVYSALISGL 354

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K  KS E ++++K ++  +   +   Y+ ++  LC  G+  EA  V+ EM      P+ 
Sbjct: 355 FKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNA 414

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y+SLM+          A ++W  M     + N   Y++LI    + G+++ A+ ++  
Sbjct: 415 YTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQ 474

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS--TFMISLCRR 553
           ML KG  PD   Y S++ GL     ++ A +++N+ +  +      +++    + +LC++
Sbjct: 475 MLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQ 534

Query: 554 GHFLVATKLL-----RGLSSDLGHSDSHVILLKSL 583
                A  LL     RG   DL    + +I L++L
Sbjct: 535 SSISRAIDLLNSMLDRGCDPDLV---TCIIFLRTL 566



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 114/535 (21%), Positives = 224/535 (41%), Gaps = 58/535 (10%)

Query: 67  ALGFFNW--ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           AL F+N    ++  N + + L+++ ++K++     ++    + + + V+K   D   Y  
Sbjct: 150 ALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCT 209

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
           ++  L +     +A S+ +E++ +     P   N L+  L   G +    K+ D M  +G
Sbjct: 210 LMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKG 269

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
              + + +   I   C   KL + +S+LD  R   +  +   V    II+G  K  R  +
Sbjct: 270 CAPNEVTYNTLIHGLCLKGKLEKAISLLD--RMVSSKCVPNVVTYGTIINGLVKQGRALD 327

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
             +VL  +  R        Y +              E V               Y   I 
Sbjct: 328 GARVLALMEER-------GYHV-------------NEYV---------------YSALIS 352

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL  E +  EA +L + +   +  ++  V +A+I G      P  A+   + M      P
Sbjct: 353 GLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKP 412

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
              T S+L K   +     + +E++K ++ +++  +   Y+V++  LC  G+++EA  V 
Sbjct: 413 NAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVW 472

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS--GCSGNLKTYNILISKFS 481
            +M  KG  PDV  Y S++       L+  A +L+++M         ++ TYNIL++   
Sbjct: 473 AQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALC 532

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +   I  A+ L ++ML++G  PD  T    L  L ++ +                   R 
Sbjct: 533 KQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQD--------------GRE 578

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDL--GHSDSHVILLKSLADAREVEMAIE 594
            L   ++ L +R   L A+K++  +   L      +   +++ L + ++V+ AI+
Sbjct: 579 FLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLCNPKKVQAAIQ 633



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 2/251 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M      P + T   L   LCK ++ DE V +   +  +  F    ++NV+++
Sbjct: 188 AVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLIN 247

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
            LC  G L     ++  M  KG  P+   YN+L+   C +  L  A  L D+M +S C  
Sbjct: 248 GLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVP 307

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ TY  +I+   + G      R+   M E+G   +   Y++L+ GL +E   Q A ++F
Sbjct: 308 NVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLF 367

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI--LLKSLADA 586
            +    +  L   + S  +  LCR G    A ++L  ++++    +++    L+K   +A
Sbjct: 368 KEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEA 427

Query: 587 REVEMAIEHIK 597
                AIE  K
Sbjct: 428 GNGHKAIEMWK 438


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 176/405 (43%), Gaps = 10/405 (2%)

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN--SMIN 224
           +G  + A  +   M   G    +    V +  FC   +   V  +   + +  N  +++N
Sbjct: 194 EGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVN 253

Query: 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER--EV 282
            +      + G CK   V++AF VL+E+  +  KP+   +  + +    +G   ER   +
Sbjct: 254 YTAW----VDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWT-ERAFRL 308

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSV 341
            LK  +     P  + Y   I G   E ++  A+ L   +V      + +    LI G  
Sbjct: 309 FLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHC 368

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
                  A    N M  +G +P + T + +    CK+ K  +  +V ++ ++     D  
Sbjct: 369 RGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKV 428

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +Y ++++  C  G +  A  +  +M      PD+  Y +++   C++  +  +++L+D+ 
Sbjct: 429 TYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKC 488

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
            + G     +TY  +I+ +  VG+   AL++F  M++ G  PD  TY +L+ GLC+E+ L
Sbjct: 489 LSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRL 548

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           + A  +F   ++  ++       T     CRR    +A   L GL
Sbjct: 549 EEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGL 593



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 120/287 (41%), Gaps = 2/287 (0%)

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RS 348
           +GV P    +R  +LG   E R  EA  L   +    F++D      ++ +       R 
Sbjct: 175 MGVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRD 234

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
               F  M+E G  P +   +     LCKR    +   V + +       ++ ++  ++ 
Sbjct: 235 VPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLID 294

Query: 409 FLCTSGRLREAYGV-IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
            LC  G    A+ + ++ +K     P+V  Y  ++   C+E  L  A+ L  +M   G +
Sbjct: 295 GLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA 354

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY  LI      G  + A  L + M  +G  P+  TY +++ G C++  +Q A++V
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV 414

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
              + +  +   +   +  +   C++GH   A  L   ++ +  H D
Sbjct: 415 LRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPD 461



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 166/409 (40%), Gaps = 18/409 (4%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDE 179
           Y   +  L +    ++AF V  E+    + + P +    SL+  L   G+ + A ++F +
Sbjct: 254 YTAWVDGLCKRGYVKQAFHVLEEMVG--KGLKPNVYTHTSLIDGLCKIGWTERAFRLFLK 311

Query: 180 MSHRGVEFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           +         +  + V I  +C+  KL +   +L   R  E  +   +     +I G C+
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLG--RMVEQGLAPNTNTYTTLIDGHCR 369

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
           G   + AF++++++++    P+   Y  +   F   G + +   VL+     G+ P    
Sbjct: 370 GGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVT 429

Query: 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMI 357
           Y   I     +  I  A +L   +       D D    +I           +   F+  +
Sbjct: 430 YTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCL 489

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G VPT  T +++    C+  KS   ++V++ +  +    D  +Y  ++S LC   RL 
Sbjct: 490 SIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLE 549

Query: 418 EAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY--N 474
           EA  + + M  K + P DV+      E C R+      K      F  G     + +  +
Sbjct: 550 EARALFETMLDKHMVPCDVTCVTLAYEYCRRD------KTTIAVSFLDGLDKRQQAHAAD 603

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            L+ K S V  ++ A     N+L+K  A D  TYTS +   C E+N  A
Sbjct: 604 ALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINS-CYESNRYA 651


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 219/548 (39%), Gaps = 96/548 (17%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---ITLDSSV 121
           S AL FFNWA Q+  +TH+  SY S+L+ L  +R +N   + L  ++      + L++  
Sbjct: 93  SKALQFFNWA-QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           +  ++ +  +    Q++  VF  +K     + P +   NSLL +L   G  + A K++DE
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMK--SHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDE 209

Query: 180 M-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           M S  GV   T  F + I  FC N                                    
Sbjct: 210 MLSTYGVTPDTFTFNILIRGFCMNG----------------------------------- 234

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK--KKRKLGVAPRT 296
              V++ F++ ++L    C+PD + Y  + +     G V     V+K   K+ + + P  
Sbjct: 235 --MVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNV 292

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y   I G   +R I                                    A+  F  M
Sbjct: 293 VTYTTLIRGYCAKREI----------------------------------EKALAVFEEM 318

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGR 415
           + +G      T + L K LC+  K +++ ++ +  + +  F+ D  ++N ++   C +G 
Sbjct: 319 VNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGN 378

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-------ASGCSG 468
           L +A  V + M    + PD + Y++L+ + C+      A+ L D++          GC  
Sbjct: 379 LDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKP 438

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            +  YN +     E G+ + A + F  ++ +G   D  +Y +L+ G C+E   ++ +E+ 
Sbjct: 439 LVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELL 497

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVA----TKLLRGLSSDLGHSDSHVILLKSLA 584
              +  D +       + +  L      L+A     K+LR  S     S  H IL K L 
Sbjct: 498 VLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRS-SHRPNSSTFHSILAKLLE 556

Query: 585 DAREVEMA 592
             R  E A
Sbjct: 557 QGRTSESA 564



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 27/297 (9%)

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM- 426
            ++L +N  +     E ++V+ ++ ++     + ++N +++ L   GR   A  V  EM 
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              G+ PD   +N L+   C   ++    ++++ +   GC  ++ TYN L+      G++
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 487 EGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             A  +   M +K V   P+  TYT+L+ G C +  ++ A  VF + VN  +       +
Sbjct: 272 TVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYN 331

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD------------LGHSDSHVILLKSLADAREVEMA 592
           T +  LC    F     +L G + D            L H   H     +L DA +V   
Sbjct: 332 TLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA---GNLDDALKVFER 388

Query: 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGKGC 649
           +  +K IQ  S T      + L  SL    + E    LL  L E+ +   + +G GC
Sbjct: 389 MSELK-IQPDSATY-----SALVRSLCQGGHYEKAEDLLDKLLERKI---LLSGDGC 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 8/201 (3%)

Query: 401 ESYNVMVSFLCTSGRLREAYGV---IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           +SY  M+  L  +  L  A      I++  R  +  +  F+NSLM    R  L + + K+
Sbjct: 112 QSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKV 171

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
           +  M + G S ++ T+N L++   + G    A +++  ML   GV PD  T+  L+ G C
Sbjct: 172 FTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFC 231

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL---SSDLG-H 572
               +   F +FN              +T +  LCR G   VA  +++G+   S DL  +
Sbjct: 232 MNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPN 291

Query: 573 SDSHVILLKSLADAREVEMAI 593
             ++  L++     RE+E A+
Sbjct: 292 VVTYTTLIRGYCAKREIEKAL 312



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 66/403 (16%), Positives = 151/403 (37%), Gaps = 54/403 (13%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y ++++     R+I    +V +++    +  ++  Y  +I  L + +  +K   +   
Sbjct: 293 VTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEG 352

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
              +     P+ C  N+L+      G +D+ALK+F+ MS   ++  +  +   +   C+ 
Sbjct: 353 TAGD-GTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQG 411

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLI------------------------------ 232
               +   +LD++ +R+  +++G     L+                              
Sbjct: 412 GHYEKAEDLLDKLLERK-ILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG 470

Query: 233 ----------IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
                     I G CK    E  +++L  +  ++  PDF  Y  +      M        
Sbjct: 471 TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQ 530

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI----VSGKFTIDDDVLNALI 338
            L+K  +    P ++ +   +  L+ + R  E+  L +++    +    +     +  L 
Sbjct: 531 SLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLF 590

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G+  +     A    + +  KG       +  L + LC   K  +  ++      +  F 
Sbjct: 591 GAGMN---DKAFQLVHLLYGKGYS---VKMEELIRYLCHCRKVIQGSKLLLFSLESHQFV 644

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           DM+  N ++  LC   +L EA+ +  ++   G+   +S  N L
Sbjct: 645 DMDLCNTVIFQLCEINKLSEAFSLYYKLVEMGVHQQLSCQNQL 687


>gi|15222950|ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13800
 gi|8778410|gb|AAF79418.1|AC068197_28 F16A14.3 [Arabidopsis thaliana]
 gi|332190949|gb|AEE29070.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 883

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 126/580 (21%), Positives = 227/580 (39%), Gaps = 116/580 (20%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  +++ L    +I   +SV+  ++ + I  D  VY  II    +  N  KA  VFN+
Sbjct: 292 IAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNK 351

Query: 145 V-----KFNC-------------------EDIGPE----------IC-NSLLAVLASDGY 169
           +     + NC                    D+  E          +C N     L   G 
Sbjct: 352 MLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGK 411

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           ++ A+++F EM+ +G+    I +   I   C   K      ++ E+     +     VI 
Sbjct: 412 VEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKT--PDIVIY 469

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY------------------------- 264
            ++  G       +EAF+ L  +  R  KP ++ +                         
Sbjct: 470 NVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEH 529

Query: 265 ------------------------RIVAEEFKLMGSVF---------EREVV------LK 285
                                   R +  EF L  SV+         E++ +      L 
Sbjct: 530 KSRENDASMVKGFCAAGCLDHAFERFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQDLLD 589

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI- 344
           +  KLGV P  + Y + I        + +A+E  E++V+ K   D      +I +   + 
Sbjct: 590 RMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLN 649

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           +P+ A   F  M  +   P + T S L         SD  +++ + + A D   D+  Y 
Sbjct: 650 EPKQAYALFEDMKRRDVKPDVVTYSVLLN-------SDPELDMKREMEAFDVIPDVVYYT 702

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
           +M++  C    L++ Y + ++MKR+ + PDV  Y  L++        +P + L  +M A 
Sbjct: 703 IMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKN-------KPERNLSREMKAF 755

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
               ++  Y +LI    ++G++  A R+F  M+E GV PDA  YT+L+   C+   L+ A
Sbjct: 756 DVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEA 815

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
             +F++ +   V       +  +   CR G  L A KL++
Sbjct: 816 KMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVK 855



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 153/351 (43%), Gaps = 52/351 (14%)

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           ++ A   YI  A  + D M   GVE     +G  I  +C    + +     + +  ++  
Sbjct: 573 SLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKK-- 630

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           ++       ++I+ +C+    ++A+ + ++++ R+ KPD + Y +      L+ S  + E
Sbjct: 631 IVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSV------LLNS--DPE 682

Query: 282 VVLKKKRK-LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + +K++ +   V P      + +   I+  R C   +L +V                   
Sbjct: 683 LDMKREMEAFDVIP------DVVYYTIMINRYCHLNDLKKVYA----------------- 719

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                       F  M  +  VP + T + L KN  +RN S E+        A D   D+
Sbjct: 720 -----------LFKDMKRREIVPDVVTYTVLLKNKPERNLSREM-------KAFDVKPDV 761

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             Y V++ + C  G L EA  +  +M   G+DPD + Y +L+  CC+   L+ AK ++D+
Sbjct: 762 FYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDR 821

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           M  SG   ++  Y  LI+     G +  A++L   MLEKG+ P   + +++
Sbjct: 822 MIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAV 872



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 169/392 (43%), Gaps = 51/392 (13%)

Query: 153 GPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI---WKFCENAKLGQ 207
            P+I   N L++ + + G  D  +  F E+   G++     + + +   W+  +  +L +
Sbjct: 179 APDIKALNFLISRMIASGRSDMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEK 238

Query: 208 VLS--MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           +LS  ++ E R       N  V  +  I G C  +  + A+ +L  LR            
Sbjct: 239 LLSRLLISETR-------NPCVFYLNFIEGLCLNQMTDIAYFLLQPLRDAN--------- 282

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
                            +L  K  LG+A     YR+ + GL  E RI +A+ +  V+   
Sbjct: 283 -----------------ILVDKSDLGIA-----YRKVVRGLCYEMRIEDAESV--VLDME 318

Query: 326 KFTIDDDVL--NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           K  ID DV   +A+I G   +++   A+  FN M++K +      +S++ +  C+     
Sbjct: 319 KHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFS 378

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E  +++K     +   D   YNV    L   G++ EA  + +EM  KG+ PDV  Y +L+
Sbjct: 379 EAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLI 438

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
             CC +     A  L  +M  +G + ++  YN+L    +  G  + A      M  +GV 
Sbjct: 439 GGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVK 498

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           P   T+  ++EGL     L  A E F +S+ H
Sbjct: 499 PTYVTHNMVIEGLIDAGELDKA-EAFYESLEH 529



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/580 (20%), Positives = 236/580 (40%), Gaps = 64/580 (11%)

Query: 9   LATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSP--SLVARVINPYLLTHHSL 66
           L  R+S A++ A        +   +  +  + LG    +     L++R+I         +
Sbjct: 144 LLIRVSTALVKAYANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIAS---GRSDM 200

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
            +GFF W  ++        +Y  ++++L  +     ++ +L ++ +++       Y   I
Sbjct: 201 VVGFF-WEIERLGLDADAHTYVLVVQALWRNDDKEELEKLLSRLLISETRNPCVFYLNFI 259

Query: 127 PSLIQGKNTQKAFSVFNEVK-----FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
             L   + T  A+ +   ++      +  D+G      ++  L  +  I++A  +  +M 
Sbjct: 260 EGLCLNQMTDIAYFLLQPLRDANILVDKSDLGIAY-RKVVRGLCYEMRIEDAESVVLDME 318

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV---RKRENSMINGSVIAVLIIHGFCK 238
             G++     +   I    +N  + + + + +++   RKR N +I  S     I+  +C+
Sbjct: 319 KHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSS-----ILQCYCQ 373

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND 298
                EA+ +  E R      D + Y +  +    +G V E   + ++    G+AP   +
Sbjct: 374 MGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVIN 433

Query: 299 YREFILGLIVERRICEAKELG-EVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFM 356
           Y   I G  ++ +  +A +L  E+  +GK T D  + N L G +++    + A      M
Sbjct: 434 YTTLIGGCCLQGKCSDAFDLMIEMDGTGK-TPDIVIYNVLAGGLATNGLAQEAFETLKMM 492

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
             +G  PT  T + + + L    + D+    Y+ L       D      MV   C +G L
Sbjct: 493 ENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKSRENDAS----MVKGFCAAGCL 548

Query: 417 REAY---------------------------------GVIQEMKRKGLDPDVSFYNSLME 443
             A+                                  ++  M + G++P+ S Y  L+ 
Sbjct: 549 DHAFERFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIG 608

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A CR + +R A++ ++ +       +L TY I+I+ +  + E + A  LF +M  + V P
Sbjct: 609 AWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKP 668

Query: 504 DATTYTSLLEGLCQETNLQ---AAFEVFNKSVNHDVMLAR 540
           D  TY+ LL     E +++    AF+V    V + +M+ R
Sbjct: 669 DVVTYSVLLNS-DPELDMKREMEAFDVIPDVVYYTIMINR 707



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 41/206 (19%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+++ N ++S +  SGR     G   E++R GLD D   Y  +++A  R D     +KL 
Sbjct: 181 DIKALNFLISRMIASGRSDMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEKLL 240

Query: 459 DQM--------------FASGCSGN------------LKTYNILISKFSEVG-------- 484
            ++              F  G   N            L+  NIL+ K S++G        
Sbjct: 241 SRLLISETRNPCVFYLNFIEGLCLNQMTDIAYFLLQPLRDANILVDK-SDLGIAYRKVVR 299

Query: 485 ------EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
                  IE A  +  +M + G+ PD   Y++++EG  +  N+  A +VFNK +     +
Sbjct: 300 GLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRI 359

Query: 539 ARSILSTFMISLCRRGHFLVATKLLR 564
              I+S+ +   C+ G+F  A  L +
Sbjct: 360 NCVIVSSILQCYCQMGNFSEAYDLFK 385


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 47/395 (11%)

Query: 167 DGYID-----NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           DGY+      NA  +F++MS  G+E   + + + +  FC++ ++ + + +L  ++ R  S
Sbjct: 344 DGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCS 403

Query: 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
               + I   II GF K   V  A+K + E+++  C+P+   Y ++      +G +    
Sbjct: 404 PTIQTYIT--IIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAA 461

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            V+ +    GV P    Y   + G            +GE+ ++ K           +  V
Sbjct: 462 SVIDEMELAGVQPNFRSYTTLMQGF---------ASIGEIGLAFK----------CLKRV 502

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
           + I  +               P + + ++L K  CK  +    + V + ++      +  
Sbjct: 503 NEITQK---------------PPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNY 547

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            +N ++      G + EAYG++Q+M+++G  PD+  Y S + ACC+   ++ A +  ++M
Sbjct: 548 IFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEM 607

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY----TSLLE--GL 515
                  NL+TY ILI  ++ V   E AL  +  M   G+ PD   Y    TSLL    +
Sbjct: 608 KQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDKPLYYCIVTSLLSKAAI 667

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
            +ET      +V ++ V+  + +  +    +  SL
Sbjct: 668 ARETVRNGVLQVTSEMVDQGMCIDLATAKQWQRSL 702



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 176/427 (41%), Gaps = 26/427 (6%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG------SVFEREVVLK 285
           IIH +CK   +E A  ++ ++  +  +     Y I+ + +          +VF +   LK
Sbjct: 234 IIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHK---LK 290

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSI 344
            +   G++P    Y   I       ++ +A E  + + +   T++ +  + L+ G V   
Sbjct: 291 ARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLG 350

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D  +A   F  M E G  P   T + L K  CK  +    +++   +        +++Y 
Sbjct: 351 DFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYI 410

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++     +G +R AY  + EMK  G  P+ + YN +M    +   +  A  + D+M  +
Sbjct: 411 TIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELA 470

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G   N ++Y  L+  F+ +GEI  A +    + E    P   +Y SLL+  C+   +Q A
Sbjct: 471 GVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNA 530

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVIL 579
             V  +     V +   I +T +    +RG    A  +++     G + D+    S V  
Sbjct: 531 IAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNA 590

Query: 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639
                D ++    IE +K  Q+  P +  +    L    +S S+PE  L+        C 
Sbjct: 591 CCKAGDMQKATETIEEMKQ-QDLQPNL--QTYTILIHGWTSVSHPEKALI--------CY 639

Query: 640 DSEIGAG 646
           D    AG
Sbjct: 640 DEMKAAG 646



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 7/274 (2%)

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
           D R A V F  M   G   ++   +NL +           V   + +     F +  +++
Sbjct: 138 DKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFS 197

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            ++S   +SG +  A    Q    +  + +V+ Y+S++ A C+   +  A+ L   M   
Sbjct: 198 AIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQ 257

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNM---LEKGVAPDATTYTSLLEGLCQETNL 521
           G    L  YNIL+  ++        L +FH +   ++ G++P A TY  L+    +   +
Sbjct: 258 GLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKM 317

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVIL 579
             A E   +     + L R+  S  +    + G F  A  +   +S      D  ++ IL
Sbjct: 318 MKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNIL 377

Query: 580 LKSLADAREVEMAIEHIKWIQE--SSPTMLQEIS 611
           LK+   +R++  AI+ +  ++    SPT+   I+
Sbjct: 378 LKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYIT 411



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y +++ +    G  R A    ++M+  G+D  V  YN+L+ A      L+ A    ++M 
Sbjct: 126 YALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEME 185

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
             G   N  T++ +IS +   G +E A + F   + +    +   Y+S++   C+  N++
Sbjct: 186 IEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNME 245

Query: 523 AA 524
            A
Sbjct: 246 RA 247


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 163/417 (39%), Gaps = 47/417 (11%)

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
           V   +++   CK     EA  VLDE+R + C P+ + Y ++       G V + + +L +
Sbjct: 188 VTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNR 247

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
               G  P    Y   + GL   RR                   DDV             
Sbjct: 248 LSSYGFQPDIVSYTTVLKGLCAARRW------------------DDVK------------ 277

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
               V F  M++K  VP   T   L +  C+    +  ++V + +S +    +    N++
Sbjct: 278 ----VLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIV 333

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ +C  GR+ +AY  +  M   G +PD   Y +++   CR      AK+L  +M    C
Sbjct: 334 INAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC 393

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             N  T+N  I    + G IE A++L   M E G +    TY +L+ G C +  + +A E
Sbjct: 394 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 453

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV------ILL 580
           +FN   N          +T +  LC       A +LL    +++   D  +      +L+
Sbjct: 454 LFN---NLPCEPNTITYTTLLTGLCHAERLDAAAELL----AEMIQKDCPLNAVTFNVLV 506

Query: 581 KSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
                   VE A+E +  + E   T        L   ++     E  L LLH L  K
Sbjct: 507 SFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSK 563



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 198/459 (43%), Gaps = 45/459 (9%)

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M  RG + S + + V +   C+++  G+ +++LDE+R +        V   +II+G C+ 
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK--GCTPNIVTYNVIINGMCRE 235

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            RV++A ++L+ L     +PD ++Y  V +         + +V+  +       P    +
Sbjct: 236 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 295

Query: 300 ----REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355
               R F  G +VER I   +++ +   +   T+ + V+NA+       D   A  F N 
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDD---AYDFLNN 352

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M   G  P   + + + + LC+  + +   E+   +   +   +  ++N  +  LC  G 
Sbjct: 353 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGL 412

Query: 416 LREAYGVIQEMKRKGL--------------------------------DPDVSFYNSLME 443
           + +A  +I+ M   G                                 +P+   Y +L+ 
Sbjct: 413 IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLT 472

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
             C  + L  A +L  +M    C  N  T+N+L+S F + G +E A+ L + M+E G  P
Sbjct: 473 GLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTP 532

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  T+ +LL+G+ ++ N + A E+ +  V+  V L     S+ +  L R      A ++L
Sbjct: 533 NLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML 592

Query: 564 RGLSSDLGHSDS---HVILLKSLADAREVEMAIEHIKWI 599
             +  D+G       +  +L +L    E + AI+   ++
Sbjct: 593 HAV-QDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYM 630



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 203/475 (42%), Gaps = 10/475 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S ++Y  +L+++  S       +VL +++    T +   Y  II  + +      A  + 
Sbjct: 186 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEIL 245

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           N  + +     P+I +  ++L  L +    D+   +F EM  +    + + F + +  FC
Sbjct: 246 N--RLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 303

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
               + + + +L ++   ++     + +  ++I+  CK  RV++A+  L+ + +  C PD
Sbjct: 304 RGGMVERAIQVLQQMS--QHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I+Y  V       G     + +L +  +    P    +  FI  L  +  I +A +L E
Sbjct: 362 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE 421

Query: 321 VIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           ++     ++     NAL+ G        SA+  FN +  +   P   T + L   LC   
Sbjct: 422 LMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAE 478

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           + D   E+   +   D   +  ++NV+VSF C  G + EA  ++ +M   G  P++  +N
Sbjct: 479 RLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 538

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
           +L++   ++     A +L   + + G S +  TY+ ++   S     E A+++ H + + 
Sbjct: 539 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 598

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           G+ P    Y  +L  LC+      A + F   V++  M   S     +  L   G
Sbjct: 599 GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 653



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 174/426 (40%), Gaps = 12/426 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F    +SY ++LK L  +R+ + +  +  ++   K   +   +  ++    +G   ++A 
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAI 312

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            V  ++  +       +CN ++  +   G +D+A    + M   G    TI +   +   
Sbjct: 313 QVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGL 372

Query: 200 CENAKLGQVLSMLDE-VRKR--ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           C   +      +L E VRK    N +   + I +L     C+   +E+A K+++ +    
Sbjct: 373 CRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICIL-----CQKGLIEQAIKLIELMPEYG 427

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
           C    + Y  +   F + G V   +  L+    L   P T  Y   + GL    R+  A 
Sbjct: 428 CSVGIVTYNALVHGFCVQGRV---DSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAA 484

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
           EL   ++     ++    N L+           A+   N M+E G  P L T + L   +
Sbjct: 485 ELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGI 544

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            K   S+E +E+   L +     D  +Y+ +V  L    R  EA  ++  ++  G+ P V
Sbjct: 545 TKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKV 604

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             YN ++ A C+      A   +  M ++GC  N  TY ILI   +  G ++ A  +   
Sbjct: 605 GMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSE 664

Query: 496 MLEKGV 501
           +  KGV
Sbjct: 665 LYAKGV 670


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 171/415 (41%), Gaps = 68/415 (16%)

Query: 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           AFSV  ++      + P    +L+  L   G    AL ++D    +G  F  + +G  I 
Sbjct: 110 AFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLIN 169

Query: 198 KFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVL----------------------- 231
             C+  K    + +L ++ K   R N ++   V+  L                       
Sbjct: 170 GLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICI 229

Query: 232 -------IIHGFCKGKRVEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVV 283
                  +IHGFC   + + A ++L+E+ ++E  +PD   + I+ +    +G V E   V
Sbjct: 230 DVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNV 289

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
                K G+ P        + G  +   + EAKE+                         
Sbjct: 290 FGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV------------------------- 324

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                    F+ M+E+G++P + + S L    CK    DE + +   +   +   D  +Y
Sbjct: 325 ---------FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTY 375

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++  L  SGR+   + +++ M+  G  PD+  YN L++   + + L  A  L+  +  
Sbjct: 376 NCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVD 435

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           +G S N++TYNILI    + G ++ A  +F  +  KG  P+  TY  ++ GL +E
Sbjct: 436 TGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRRE 490



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 167/413 (40%), Gaps = 5/413 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N LL+ +    +    + +   +  +G  + S +   +FI       ++G   S++ ++ 
Sbjct: 59  NKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSLTHLGQMGLAFSVMAKIV 118

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           KR   +         ++ G C   R  EA  + D    +    D + Y  +      MG 
Sbjct: 119 KRGFGV--DPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGK 176

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
             +   +L+K  K GV P    Y   + GL  E  + EA  L   +V     ID    N+
Sbjct: 177 TRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNS 236

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           LI G   +   + A+   N M+ K  V P + T + L   LCK     E   V+ ++   
Sbjct: 237 LIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKR 296

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ S N +++  C  G + EA  V   M  +G  P+V  Y++L+   C+  ++  A
Sbjct: 297 GLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEA 356

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L  +M       +  TYN L+   S+ G +     L   M   G APD  TY  LL+ 
Sbjct: 357 LRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDD 416

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
             +   L  A  +F   V+  +       +  +  LC+ G    A ++ + LS
Sbjct: 417 YLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLS 469


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 194/449 (43%), Gaps = 36/449 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++   +      + D++ K+ K    +L+  +Y  II +  Q  N ++A  +  E
Sbjct: 313 VTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVRE 372

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++ +  D   ++ +S++         +  L +F+ +   G + S I +G  +  + +  K
Sbjct: 373 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 432

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + LS+  E+      + + +    ++I+GF        AF + +E+     +PD   Y
Sbjct: 433 VAKALSISKEMES--CGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 490

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ E F  MG++     +L+K +K  + P    +R  I G  V                
Sbjct: 491 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV---------------- 534

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                             + D +SA+   + M   G VPT+ T + L   L +++K    
Sbjct: 535 ------------------AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 576

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V V   +S      +  +Y +++     SG + +A+    ++K  GL  DV  Y +L+ A
Sbjct: 577 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 636

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC+   ++ A  +  +M       N   YNILI  ++  G++  A  L   M E GV P+
Sbjct: 637 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPN 696

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             TYTS +   C+  ++Q A +V  + V+
Sbjct: 697 IHTYTSYINACCKAGDMQRAEKVIEEMVD 725



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 177/416 (42%), Gaps = 5/416 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    +  AL   +EM   G+E + + + + I  F +        ++  E 
Sbjct: 279 VFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA 338

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + + +S+ NG +I   IIH  C+   +E A +++ E+           Y  +   + ++ 
Sbjct: 339 KTKLSSL-NG-IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQ 396

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVL 334
           +  +  VV ++ ++ G  P    Y   +L L V+  ++ +A  + + + S     ++   
Sbjct: 397 NENKCLVVFERLKECGFKPSIISY-GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTY 455

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           + LI G +   D  +A   F  M+  G  P  +  + L +  CK    D  + + + +  
Sbjct: 456 SMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQK 515

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                   ++  ++     +G ++ A   +  M+R G  P V  YN+L+    R+  ++ 
Sbjct: 516 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 575

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + D+M  +G + N  TY I++  ++  G+I  A   F  + E G+  D   Y +LL 
Sbjct: 576 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 635

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             C+   +Q+A  V  +     +     I +  +    RRG    A  L++ +  D
Sbjct: 636 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 691



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/444 (19%), Positives = 178/444 (40%), Gaps = 61/444 (13%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F  S +SY  +L       ++    S+ K+++   I  ++  Y  +I   I   +   A
Sbjct: 412 GFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANA 471

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           F++F E+  +       I N L+      G +D A+ + ++M    ++ S   F   I  
Sbjct: 472 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 531

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRI 254
           +     +   L  LD +R+      +G V  V+    +IHG  +  +V+ A  VLD++ I
Sbjct: 532 YAVAGDMKSALDTLDLMRR------SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 585

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+   Y I+   +   G + +      K ++ G+      Y   +      R  C+
Sbjct: 586 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLL------RACCK 639

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +  +   +   +             S   I PR+  + +N +I+                
Sbjct: 640 SGRMQSALAVTREM-----------SFQKI-PRNTFI-YNILID---------------G 671

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             +R    E  ++ K +  +    ++ +Y   ++  C +G ++ A  VI+EM   GL P+
Sbjct: 672 WARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 731

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L++   R  L   A K +++M  +G   +  +Y+ L++                
Sbjct: 732 VKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT---------------- 775

Query: 495 NMLEKGVAPDATTYTSLLEGLCQE 518
           ++L +    + +TYT ++  +C+E
Sbjct: 776 SLLSRATVMEGSTYTGII-SVCRE 798



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           + +M+ +    G    A    + M+ +G++P+   + SL+ A      +R A    ++M 
Sbjct: 245 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 304

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + G    + TY+ILIS F+++ + + A  LF     K  + +   Y++++   CQ  N++
Sbjct: 305 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 364

Query: 523 AAFEV 527
            A E+
Sbjct: 365 RAEEL 369



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 53/116 (45%)

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+  ++ M A G   N   +  L+  ++   ++ GAL     M  +G+     TY+ L+ 
Sbjct: 261 ARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILIS 320

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           G  +  + Q+A  +F ++      L   I S  + + C+ G+   A +L+R +  D
Sbjct: 321 GFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEED 376


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/519 (21%), Positives = 216/519 (41%), Gaps = 24/519 (4%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           +  +++A  + + I     R++P  +W   L          D   PS  + ++    L +
Sbjct: 91  KDVSEIAAEVGKVI-----RSKP--RWEQSLLSDYPSFNFHD---PSFFSELLKQ--LNN 138

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
             L+L FF W S QP F   P+S + +  +L  ++      S L   + +        Y 
Sbjct: 139 VFLSLRFFLWLSSQPEFLPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENY- 197

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
             I  + +G   ++A   F+ +K        E  N         G  D   K+++ M   
Sbjct: 198 --IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMET 255

Query: 184 GVE----FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           GV+      T+G+   I  FC + K+ +   +L +    E+ +   +     +I GFCK 
Sbjct: 256 GVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQ--SLEDGLTPCNDAFNKLISGFCKE 311

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K      +++  + ++   PD   Y+ +   F       +   V    +  G AP    Y
Sbjct: 312 KNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMY 371

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIE 358
              I G     ++ +A +L   ++   F  ++   N LI     I +   A+  +  M++
Sbjct: 372 TTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLD 431

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G   T  + + L   LC   ++DE  + ++ +   +   D+ +YN ++   C  G++ +
Sbjct: 432 SGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQ 491

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           +  +++E++ KGL P  S Y  L++  C+   ++ AK++W+ M   G    + T + +IS
Sbjct: 492 STDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIIS 551

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              E G +   +     ML+  + P   T+  L++ L Q
Sbjct: 552 GLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQ 590



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 8/241 (3%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +E G  P     + L    CK      ++E+   +   +   D+ +Y  +++  C +   
Sbjct: 290 LEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMT 349

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A+ V   +K +G  PD+  Y +L+   C+   L  A KLW +M   G   N  +YN L
Sbjct: 350 LQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTL 409

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F ++G ++ A++L+  ML+ G      +  +L+ GLC       A++ F +    ++
Sbjct: 410 IYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 469

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGL--------SSDLGHSDSHVILLKSLADARE 588
           +      +T +   CR G  L +T LL+ L        +S   H    +  L S+ +A+E
Sbjct: 470 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKE 529

Query: 589 V 589
           +
Sbjct: 530 M 530



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 18/377 (4%)

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE---EFKLMGSVFE-REVVLKKKR 288
           I   C+G  VEEA    D L+    +P    +    +   +F     +++  E +++   
Sbjct: 198 IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGV 257

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
           +  V   T  Y   I     + ++  A E+    +    T  +D  N LI G     +  
Sbjct: 258 QKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHH 315

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
             +   + MI K R P + T   +    CK   + +  EV+  L    Y  DM  Y  ++
Sbjct: 316 RVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLI 375

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G+L +A  +  EM  KG  P+   YN+L+   C+   L  A KL+ +M  SG  
Sbjct: 376 HGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYK 435

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
               + N LI      G  + A   F  M  K +  D  TY +L++G C+E  +  + ++
Sbjct: 436 ETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDL 495

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKS 582
             +     +  + S  +  +  LC+ G    A ++      RGL   +   D H+I    
Sbjct: 496 LKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRD-HII---- 550

Query: 583 LADAREVEMAIEHIKWI 599
            +   E    +E ++W+
Sbjct: 551 -SGLCEQGYVVEGMEWL 566


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 200/490 (40%), Gaps = 82/490 (16%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINA---IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            +  S L+Y+++L +LS +   +A    DS+L     + +  +   Y  +I +L    + 
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLS----DGVAPNVYTYNILIRALCGRGHR 166

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A S+  +++      GP +   N+L+A     G +D A ++   M   G++ + + F 
Sbjct: 167 KEALSILRDMRG--AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTF- 223

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
                                     NSM+NG           CK  ++E+A KV DE+ 
Sbjct: 224 --------------------------NSMVNG----------MCKAGKMEDARKVFDEMM 247

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                PD ++Y  +   +   G   E   V  +  + G+ P    +   I        +C
Sbjct: 248 REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI------HVMC 301

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A  L                              A+     M E+G      T + L  
Sbjct: 302 KAGNL----------------------------EWAVTLVRQMRERGLQMNEVTFTALID 333

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK+   D+ +   + +        +  YN +++  C  GR+ EA  ++ EM+ KGL P
Sbjct: 334 GFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  Y++++ A C+      A +L  QM   G   +  TY+ LI    E   +  A  LF
Sbjct: 394 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLF 453

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
            NM++ G+ PD  TYTSL++G C+E N++ A  + +K V   V+      S  +  L + 
Sbjct: 454 KNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKS 513

Query: 554 GHFLVATKLL 563
              + A +LL
Sbjct: 514 ARAMEAQQLL 523



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/550 (21%), Positives = 225/550 (40%), Gaps = 84/550 (15%)

Query: 57  NPYLLTHHSLALGFFNWA---------------SQQPNFTHSPLSYHSILKSLSLSRQIN 101
            P ++T+++L   FF                    +PN     ++++S++  +  + ++ 
Sbjct: 182 GPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNL----VTFNSMVNGMCKAGKME 237

Query: 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--S 159
               V  ++    +  D   Y  ++    +   + +A SVF E+    + I P++    S
Sbjct: 238 DARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ--KGIMPDVVTFTS 295

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           L+ V+   G ++ A+ +  +M  RG++ + + F   I  FC+   L   L     VR   
Sbjct: 296 LIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL---AVRGMR 352

Query: 220 NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL---MG 275
              I  SV+    +I+G+C   R++EA ++L E+  +  KPD + Y  +   +       
Sbjct: 353 QCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTH 412

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           S FE    + +K   GV P    Y   I      R +CE K L +               
Sbjct: 413 SAFELNQQMLEK---GVLPDAITYSSLI------RVLCEEKRLSD--------------- 448

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                        A V F  MI+ G  P   T ++L    CK    +  + ++  +    
Sbjct: 449 -------------AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAG 495

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC---------- 445
              D+ +Y+V+++ L  S R  EA  ++ ++  +   P  + Y++LM  C          
Sbjct: 496 VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLA 555

Query: 446 -----CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
                C + L+  A K++  M     + +   Y++LI      G +  AL     ML++G
Sbjct: 556 LLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRG 615

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL-CRRGHFLVA 559
            AP++T+  SL+ GL +   +  A +V  + +N    LA +  S  +I L    G+    
Sbjct: 616 FAPNSTSTISLIRGLFENGMVVEADQVIQQLLNC-CSLADAEASKALIDLNLNEGNVDAV 674

Query: 560 TKLLRGLSSD 569
             +L G++ D
Sbjct: 675 LDVLHGMAKD 684



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 115/232 (49%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           NA++ ++S     SA  FF+ M+  G  P + T + L + LC R    E + + + +   
Sbjct: 120 NAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGA 179

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN +V+    +G +  A  ++  M   GL P++  +NS++   C+   +  A
Sbjct: 180 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDA 239

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +K++D+M   G + +  +YN L+  + + G    AL +F  M +KG+ PD  T+TSL+  
Sbjct: 240 RKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 299

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +C+  NL+ A  +  +     + +     +  +   C++G    A   +RG+
Sbjct: 300 MCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 351



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 140/344 (40%), Gaps = 39/344 (11%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I   C     +EA  +L ++R   C P+ + Y  +   F   G V   E ++      
Sbjct: 155 ILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDG 214

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    +   + G+    ++ +A+++                                
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKV-------------------------------- 242

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F+ M+ +G  P   + + L    CK   S E + V+  ++      D+ ++  ++  +
Sbjct: 243 --FDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVM 300

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C +G L  A  ++++M+ +GL  +   + +L++  C++  L  A      M       ++
Sbjct: 301 CKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSV 360

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             YN LI+ +  VG ++ A  L H M  KG+ PD  TY++++   C+  +  +AFE+  +
Sbjct: 361 VCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ 420

Query: 531 SVNHDVMLARSILSTFMISLCRR-----GHFLVATKLLRGLSSD 569
            +   V+      S+ +  LC        H L    +  GL  D
Sbjct: 421 MLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 37/398 (9%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           C  ++      GY++  +  F +M   G+  + I F   I   C+   + Q   +L+E+ 
Sbjct: 262 CTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMV 321

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIAYRIVAEEFKLMG 275
           +R             +I G CK    E+AF++  +L R    KP+   Y  +   +    
Sbjct: 322 RR--GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +   E++L + ++ G+ P TN Y   I G         A EL                 
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYEL----------------- 422

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                             + M ++G  P + T + +   LCK+   DE   +   +S + 
Sbjct: 423 -----------------MDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +Y +++S  C       +     +M + G  PD+  Y +L+   CR+  ++ ++
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESE 525

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L+++  + G     KTY  +I  +   G    A++LF  M   G APD+ TY +L+ GL
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGL 585

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           C+E+ L  A  +++  ++  +        T     C++
Sbjct: 586 CKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKK 623



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 107/517 (20%), Positives = 212/517 (41%), Gaps = 64/517 (12%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +AL F  WA   P F H    Y     +L  ++ +   + V++ + +N            
Sbjct: 116 VALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMN------------ 163

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV 185
                +    ++A ++  E++        +  N +L V    G ++ A  MF EM  RGV
Sbjct: 164 ---FAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGV 220

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-----AVLIIHGFCKGK 240
               + F + +   C    +G+VL    E  +  N+M+    I       LII  FC+  
Sbjct: 221 SPDCVSFKLMVVACCN---MGRVL----EAERWLNAMVERGFIVDNATCTLIIDAFCQKG 273

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            V                      R+V   +K++              ++G+AP   ++ 
Sbjct: 274 YVN---------------------RVVGYFWKMV--------------EMGLAPNVINFT 298

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV--SSIDPRSAIVFFNFMIE 358
             I GL  +  I +A EL E +V   +  +      LI  +       ++  +F   +  
Sbjct: 299 ALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRS 358

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G  P + T + +    CK +K +    +   +       +  +Y  ++   C  G    
Sbjct: 359 DGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVR 418

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           AY ++  M ++G  P++  YN++++  C++  L  A +L +++   G   +  TY IL+S
Sbjct: 419 AYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMS 478

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
                 +   +L  F+ ML+ G  PD  +YT+L+   C++  ++ +  +F ++V+  ++ 
Sbjct: 479 VHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIP 538

Query: 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
            +   ++ +   CR G+  +A KL + +S+     DS
Sbjct: 539 TKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDS 575


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/559 (21%), Positives = 217/559 (38%), Gaps = 56/559 (10%)

Query: 62  THHSLALGFFNWASQQP-----NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT 116
            H  LAL F NW  QQP     + TH       IL    L     +I   L Q+ V   +
Sbjct: 23  VHGRLALKFLNWVIQQPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVGSKS 82

Query: 117 L-------------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163
           +             + SV+  +I   ++      A   F  +     +     CN LL  
Sbjct: 83  VFGALMNTYPLCKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGK 142

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L  +  +      F EM  R V      F + I   C   KL +   +L ++   E+  +
Sbjct: 143 LVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKME--ESGYV 200

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
              V    +++ +CK  R + A +++D++  +  + D   Y ++ ++        +  ++
Sbjct: 201 PSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLL 260

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVS 342
           LKK RK  ++P    Y   I G + E +I  A  + + +       +    NALI G   
Sbjct: 261 LKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCH 320

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             +   A+     M   G  P   + S L   LC+  K +    + + +  N       +
Sbjct: 321 DGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIA 380

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y  M+  LC +G L E+  ++ +M + G+ PDV  ++ L+   CR   ++  K++  +M+
Sbjct: 381 YTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMY 440

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRL------------------------------ 492
            +G + N   Y  LI  + + G++  A ++                              
Sbjct: 441 KAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVG 500

Query: 493 -----FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547
                FH+M + G  P++ T+  ++ G     N   AF +F++ +      +       +
Sbjct: 501 VAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLL 560

Query: 548 ISLCRRGHFLVATKLLRGL 566
            +LCR G F  A +LL  L
Sbjct: 561 KALCRAGKFKEAKRLLDKL 579



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 191/458 (41%), Gaps = 51/458 (11%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF-----NCEDIGPEICNSL 160
           +LK+++   I+ +   Y  II   ++      A  +F E+       NC        N+L
Sbjct: 260 LLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTY-----NAL 314

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     DG  + AL + + M   G + + + +   +   C +AK     S+L+  R R N
Sbjct: 315 IDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILE--RMRMN 372

Query: 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            MI G +    +I G C+   + E+ K+LD++      PD + + ++   F  +G +   
Sbjct: 373 GMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNV 432

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
           + ++ K  K G+AP +  Y   I        + EA ++   +    +  +  + N L+ S
Sbjct: 433 KEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSS 492

Query: 341 VSSIDPRSAIV--FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           +   D +  +   FF+ M + G VP   T                               
Sbjct: 493 LCK-DGKVGVAEYFFHHMSKIGNVPNSIT------------------------------- 520

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
               ++ +++    SG   +A+ +  EM + G  P    Y  L++A CR    + AK+L 
Sbjct: 521 ----FDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLL 576

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D++     + +  TYN ++ +  + G +  A+ LF  M+++ V PD+ TY  +  GL + 
Sbjct: 577 DKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRR 636

Query: 519 TNLQAAFEVFNKSVNHDVMLARSIL-STFMISLCRRGH 555
             + AA   +   +    +    ++ +TF+  L R G 
Sbjct: 637 GKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQ 674



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 104/521 (19%), Positives = 205/521 (39%), Gaps = 48/521 (9%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  S  + + +L  L   R++ A+    K++   ++  D S +  +I  L      +KA 
Sbjct: 129 FNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAG 188

Query: 140 SVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
            +  ++    E+ G  P +   N++L      G    AL++ D+M  +G+E     + + 
Sbjct: 189 YLLKKM----EESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNML 244

Query: 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRI 254
           +   C+N +  +   +L ++RKR   MI+ + I    II+GF K  ++  A ++  E+ +
Sbjct: 245 VDDLCKNNRSAKGYLLLKKMRKR---MISPNEITYNSIINGFVKEGKIGAATRIFQEMSM 301

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+ + Y  + +     G+  +   +L+     G  P    Y   + GL    +   
Sbjct: 302 LNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFEL 361

Query: 315 AKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +K + E +      +      A+I G   +     ++   + M++ G VP + T S L  
Sbjct: 362 SKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLIN 421

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             C+  K   + E+   +       +   Y  ++   C +G + EA+ V   M R G D 
Sbjct: 422 GFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDA 481

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +    N L+ + C++  +  A+  +  M   G   N  T++ +I+ +   G    A  +F
Sbjct: 482 NCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMF 541

Query: 494 HNMLEKGVAP-----------------------------------DATTYTSLLEGLCQE 518
             M++ G  P                                   D  TY ++L    + 
Sbjct: 542 DEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKS 601

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559
             L  A  +F++ V  +V+      +     L RRG  + A
Sbjct: 602 GMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAA 642



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 2/215 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E G VP++ T + +    CK+ +    +E+   + +     D  +YN++V  LC + R
Sbjct: 194 MEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNR 253

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             + Y ++++M+++ + P+   YNS++    +E  +  A +++ +M       N  TYN 
Sbjct: 254 SAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNA 313

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI      G  E AL +   M   G  P+  +Y++LL GLC+    + +  +  + +  +
Sbjct: 314 LIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILER-MRMN 372

Query: 536 VMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSD 569
            M+   I  T MI  LCR G    + KLL  +  D
Sbjct: 373 GMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKD 407



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/445 (18%), Positives = 185/445 (41%), Gaps = 3/445 (0%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
           Y  ++ +L +    ++A  + +++ +    +     N++L      G + +A+ +FDEM 
Sbjct: 556 YGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMV 615

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
            R V   +  + +         K+   L     +  +  ++    V+    + G  +  +
Sbjct: 616 QRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGK-GAVSPEKVMYTTFVDGLFRAGQ 674

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYR 300
            + A    +++       D IA  ++   +  MG + +  ++       + ++P    Y 
Sbjct: 675 SKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYN 734

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             + G   ++ + +   L  +++      D    ++LI G   S      +     M+  
Sbjct: 735 ILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLD 794

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G      T + L    C+ ++  +  ++  +++  D F DM +++ ++S L     ++E+
Sbjct: 795 GVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQES 854

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
           + ++ EM  +G  PD   Y +L+   CR   +  A KL D+M A G S      + L+  
Sbjct: 855 HLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRG 914

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
            ++ G++E A  +   ML K + P   T+T+L+   C+  +L  A ++ +     DV L 
Sbjct: 915 LAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLD 974

Query: 540 RSILSTFMISLCRRGHFLVATKLLR 564
               +  +  LC  G    A KL +
Sbjct: 975 VIAYNVLISGLCADGDVASALKLYK 999



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 311  RICEAKELGE----VIVSGKFTIDDDVL--NALIGSVSSIDP-RSAIVFFNFMIEKGRVP 363
            + CE  E+G+    V +   F I  D+   +++I  +S +   + + +  + M+E+G +P
Sbjct: 809  KYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIP 868

Query: 364  TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
                   L   +C+        ++   + A    +   + + +V  L   G++ EA  V+
Sbjct: 869  DRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVL 928

Query: 424  QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
              M RK L P ++ + +LM   CR + L  A KL D M       ++  YN+LIS     
Sbjct: 929  DFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCAD 988

Query: 484  GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
            G++  AL+L+  + ++G+ P+ TTY  L++ +       A  EV  K +       R ++
Sbjct: 989  GDVASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDISLAKGEVLLKDLQE-----RGVI 1043

Query: 544  STFMISLCRRGHFLVATKLLRGLSSD 569
            S       R+G  ++A   L+ + ++
Sbjct: 1044 SGHWCGGIRQG-LIIAMDRLKSMKAN 1068



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 65/140 (46%)

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
           S ++ L+    RE ++  A + +  M   G + ++ T N+L+ K  +  ++      F  
Sbjct: 99  SVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKE 158

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555
           ML + V PD +T+  L+  LC E  L+ A  +  K      + +    +T +   C++G 
Sbjct: 159 MLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGR 218

Query: 556 FLVATKLLRGLSSDLGHSDS 575
           +  A +L+  + S    +D+
Sbjct: 219 YKAALELIDQMGSKGIEADA 238


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 129/562 (22%), Positives = 236/562 (41%), Gaps = 71/562 (12%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++Y+ ++K  S + Q++    +L  +  N+   D  V   +I +L +     +A+ +F  
Sbjct: 510  VTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCR 569

Query: 145  VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +K     + P +   N+L+A L  +G +  A+++F  M+  G   +TI F   +   C+N
Sbjct: 570  LKD--MKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKN 627

Query: 203  AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA---FKVLDELRIRECK- 258
             ++   L ML ++    N M +       IIHG    KRV +A   F  + ++   +C  
Sbjct: 628  DEVDLALKMLYKMTTM-NCMPDVLTFNT-IIHGLVIEKRVSDAIWLFHQMKKMLTPDCVT 685

Query: 259  -----PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                 P  +   ++ + FK+      R         LGV      + + + G++ +    
Sbjct: 686  LCTLLPGVVKNGLMEDAFKIAEDFVHR---------LGVYVDRRFWEDLMGGILTQAGTE 736

Query: 314  EAKELGEVIVSGKFTIDDDVLNALIGSV-----------------SSIDPRSAIVFFNFM 356
            +    G+ +V G+   D  VL  +I  +                   +  +  +  +NF+
Sbjct: 737  KTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFL 796

Query: 357  IE--------------------KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
            IE                     G  P + T + L     K  K +EL E+Y+ +  +  
Sbjct: 797  IEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSC 856

Query: 397  FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              +  ++N++++ L  S  L +A  +  ++      P    Y  L++   +   L  AK+
Sbjct: 857  KPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKE 916

Query: 457  LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            L+++M   GC  N   YNILI+ F + G++  A  LF  M+ +G+ PD  +YTSL+  LC
Sbjct: 917  LFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLC 976

Query: 517  QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL------RGLSSDL 570
            +   +  A   F K +    +   SI    MI    R H +     L      RG++ DL
Sbjct: 977  EAGRVDDALHYFEK-LKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDL 1035

Query: 571  GHSDSHVILLKSLADAREVEMA 592
               +S   L+ +L  A  VE A
Sbjct: 1036 FTYNS---LILNLGVAGMVEQA 1054



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 128/601 (21%), Positives = 241/601 (40%), Gaps = 44/601 (7%)

Query: 44  RDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI 103
           +++LS   V  V+N  L    + A  +FN  ++ P   H+  + + +L+ L + R++  +
Sbjct: 86  KNALSSKEVMAVLNSIL--DPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDM 143

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSL-IQG--KNTQKAFSVFNEVKFNCEDIGPEICNSL 160
             V   ++   I  D + Y  I   L I+G  + T  AF    E  F+   +     N L
Sbjct: 144 VVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFH---LNAYSYNGL 200

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV----- 215
           + +L   G    AL+M+  M   G++ S   F   +    +      V S+L+E+     
Sbjct: 201 IHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGL 260

Query: 216 ----------------------------RKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247
                                       R  ++      V   ++I   C   ++++A +
Sbjct: 261 KPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAME 320

Query: 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
           +  +++    KPD + Y  + ++F   G +   +    +    G AP    +   +  L 
Sbjct: 321 LFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALC 380

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLS 366
               I EA  L +V+       +    N LI  +  ++    A+  FN M   G VPT  
Sbjct: 381 KAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAY 440

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T         K  +SD+ +E ++ +       ++ + N  +  L   GRLREA  +   +
Sbjct: 441 TYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRL 500

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           K  GL PD   YN +M+   +   +  A +L   M  + C  ++   N LI+   + G +
Sbjct: 501 KSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRV 560

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546
           + A ++F  + +  +AP   TY +L+ GL +E  +Q A E+F     +         +T 
Sbjct: 561 DEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTI 620

Query: 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606
           +  LC+     +A K+L  +++     D  V+   ++     +E  +    W+      M
Sbjct: 621 LDCLCKNDEVDLALKMLYKMTTMNCMPD--VLTFNTIIHGLVIEKRVSDAIWLFHQMKKM 678

Query: 607 L 607
           L
Sbjct: 679 L 679



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 137/282 (48%), Gaps = 1/282 (0%)

Query: 231  LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            L++    K  ++ E F++ +++    CKP+ I + I+        S+ +   +       
Sbjct: 830  LLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSG 889

Query: 291  GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
              +P    Y   + GL+   R+ EAKEL E +V      ++ + N LI G   + D  +A
Sbjct: 890  DFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTA 949

Query: 350  IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
               F  M+ +G  P L + ++L   LC+  + D+ +  ++ L     + D  +YN+M+  
Sbjct: 950  CELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDG 1009

Query: 410  LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            L  S R+ EA  +  EM+ +G++PD+  YNSL+       ++  A KL++++   G   N
Sbjct: 1010 LGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069

Query: 470  LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            + TYN LI  +S  G  + A  ++  M+  G +P+  T+  L
Sbjct: 1070 VFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 104/485 (21%), Positives = 206/485 (42%), Gaps = 43/485 (8%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +++++IL  L  + +++    +L ++       D   +  II  L+  K    A  +F++
Sbjct: 615  ITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQ 674

Query: 145  VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR--------------------- 183
            +K         +C +LL  +  +G +++A K+ ++  HR                     
Sbjct: 675  MKKMLTPDCVTLC-TLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQA 733

Query: 184  GVEFSTIGFG--VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL---------- 231
            G E  TI FG  +   + C++  +  ++ ++  + K + +++  SV              
Sbjct: 734  GTE-KTILFGDRLVCGRVCKDGSV--LMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTL 790

Query: 232  -----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
                 +I GF      E A+ +  E++   C PD   Y ++ +     G + E   + ++
Sbjct: 791  ESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQ 850

Query: 287  KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSID 345
                   P T  +   I  L+    + +A +L   +VSG F+        L+ G + S  
Sbjct: 851  MICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGR 910

Query: 346  PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
               A   F  M++ G  P  +  + L     K    +   E++K +       D++SY  
Sbjct: 911  LEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTS 970

Query: 406  MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            +V  LC +GR+ +A    +++K+ GL  D   YN +++   R   +  A  L+D+M + G
Sbjct: 971  LVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG 1030

Query: 466  CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             + +L TYN LI      G +E A +L+  +   G+ P+  TY +L+ G     N  +A+
Sbjct: 1031 INPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAY 1090

Query: 526  EVFNK 530
             V+ +
Sbjct: 1091 AVYKR 1095



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 8/233 (3%)

Query: 74   ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
            +S +PN     +   +++KS SL + ++    ++        +     Y  ++  L++  
Sbjct: 854  SSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVS----GDFSPTPCTYGPLLDGLLKSG 909

Query: 134  NTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192
              ++A  +F E V + C      I N L+      G ++ A ++F  M   G+      +
Sbjct: 910  RLEEAKELFEEMVDYGCRP-NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSY 968

Query: 193  GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252
               +   CE  ++   L   ++++  +  +   S+   L+I G  +  R+EEA  + DE+
Sbjct: 969  TSLVGCLCEAGRVDDALHYFEKLK--QTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 253  RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
            + R   PD   Y  +     + G V +   + ++ + +G+ P    Y   I G
Sbjct: 1027 QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRG 1079


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 157/360 (43%), Gaps = 36/360 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G + +A  +FDEM  RGV  + + F   I   C    L    ++    R 
Sbjct: 120 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL--HRRM 177

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +         +I G C+  R+E+A  V +++  R  KP+ + + I+ +     G  
Sbjct: 178 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 237

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                + ++ R+ GV P    Y   + GL      C A++L                   
Sbjct: 238 ETMLELHREMRERGVRPDAVTYNAIVNGL------CRARDL------------------- 272

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                    +SA      M   G  P   T + L    CK  + D  +E+ + + A    
Sbjct: 273 ---------KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVG 323

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            D  +Y  ++S L  +GR  +A  V+ EM   GL+PD + Y  +++A CR+  ++   +L
Sbjct: 324 LDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRL 383

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             +M   G    + TYN++++ F ++G+++ A  L + M+  GV+PD  TY  LL+G C+
Sbjct: 384 LKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK 443



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 159/386 (41%), Gaps = 45/386 (11%)

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A  V DE++ R  +   +++  +       G +   E + ++  + GV P    Y   I 
Sbjct: 135 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ 194

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364
           GL    RI +A+ +                                  F  M  +G  P 
Sbjct: 195 GLCRVGRIEDARGV----------------------------------FEKMCGRGMKPN 220

Query: 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424
               + L    CK+  ++ ++E+++ +       D  +YN +V+ LC +  L+ A G++ 
Sbjct: 221 AVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV 280

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           EM+  GL PD   Y +L++  C+E+ L  A ++   M A G   +  TY  LIS  S+ G
Sbjct: 281 EMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 340

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
               A R+   M+E G+ PD TTYT +++  C++ +++    +  +  N          +
Sbjct: 341 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 400

Query: 545 TFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWI 599
             M   C+ G    A  LL      G+S D     ++ ILL       +V   IE +K  
Sbjct: 401 VIMNGFCKLGQMKNADMLLNAMINIGVSPD---DITYNILLDGHCKHGKV-TDIEELKSA 456

Query: 600 QESSPTM--LQEISAELFASLSSSSY 623
           + + P +     I  E+    ++ +Y
Sbjct: 457 KGTVPDLGVYTSIVGEIVKKKTTKTY 482



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 9/151 (5%)

Query: 383 ELVEVYKVLSANDYFTDMES---------YNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
           +LV + ++ SA + F +M+S         +N M+S +C +G L  A  + + M   G+ P
Sbjct: 125 DLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTP 184

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  Y +L++  CR   +  A+ ++++M   G   N   + ILI    + G+ E  L L 
Sbjct: 185 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 244

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             M E+GV PDA TY +++ GLC+  +L++A
Sbjct: 245 REMRERGVRPDAVTYNAIVNGLCRARDLKSA 275



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%)

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL P+   +N LM    R   L  A+ ++D+M + G    + ++N +IS     G+++GA
Sbjct: 111 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 170

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
             L   M E GV PD  TY +L++GLC+   ++ A  VF K     +     + +  + +
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 230

Query: 550 LCRRG 554
            C++G
Sbjct: 231 HCKKG 235



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 101/240 (42%), Gaps = 17/240 (7%)

Query: 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167
           ++++   +  D+  Y  I+  L + ++ + A  +   V+     + P+       +   D
Sbjct: 245 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV--VEMRSAGLRPDTVTYTTLI---D 299

Query: 168 GY-----IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
           GY     +D A+++   M   GV    + +   I    +  +      +L E+   E  +
Sbjct: 300 GYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM--EAGL 357

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
              +    ++I  FC+   V+   ++L E++ +  KP  + Y ++   F  +G +   ++
Sbjct: 358 EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADM 417

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD-DVLNALIGSV 341
           +L     +GV+P    Y   + G     ++ + +EL     S K T+ D  V  +++G +
Sbjct: 418 LLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL----KSAKGTVPDLGVYTSIVGEI 473


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 181/429 (42%), Gaps = 39/429 (9%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +++K L L  ++    S+L +        D   Y  II  L +   T+ A  +F ++K  
Sbjct: 145 TLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMK-- 202

Query: 149 CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
              + P +   N+++  L   G +D A  +  EM   G+E     +   I  FC   +  
Sbjct: 203 KIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQ 262

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
             + +LDE+  R     +     +LI  G CK  RV EA+ V+  +  R  KPD ++Y  
Sbjct: 263 AAVKLLDEMVVRGKVYPDVYTFNILI-DGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNA 321

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326
           +   + L GSV E + V  K  +    P    Y   I G       C+ + + E      
Sbjct: 322 LMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGY------CKVRMVDE------ 369

Query: 327 FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386
                                 A+V    M  K  VP   T + L   L K  +S    +
Sbjct: 370 ----------------------AMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWD 407

Query: 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
           + + + A+    D+ +YNV++       +  +A  + Q +   G+ P++  YN L++  C
Sbjct: 408 LVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLC 467

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   L+ AK+++  + A GC  N++TYNI+I    + G ++ A  L + M+     P+  
Sbjct: 468 KSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYI 527

Query: 507 TYTSLLEGL 515
           T+ +++  +
Sbjct: 528 TFDTIVRAI 536



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 198/487 (40%), Gaps = 71/487 (14%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF--IIPSLIQGKNTQKAFSVFNE 144
           ++ +L +L   ++ NA+ S L  +  +K T+  S+  F  +I +  Q      AFS+   
Sbjct: 72  FNKLLSTLIKLKRYNAVVS-LYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGN 130

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      I   I  +L+  L   G +  A+ +  E   RG  F  + +G  I   C+  K
Sbjct: 131 ILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGK 190

Query: 205 LGQVLSMLDEVRK--------RENSMINGSVIAVLI------------------------ 232
               + M  +++K          N++I+G     L+                        
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNS 250

Query: 233 -IHGFCKGKRVEEAFKVLDELRIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            IHGFC   R + A K+LDE+ +R +  PD   + I+ +    +G V E   V+    K 
Sbjct: 251 MIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR 310

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   + G  +   + EAK++                                
Sbjct: 311 GWKPDIVSYNALMNGYCLSGSVGEAKQV-------------------------------- 338

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F+ M+E+  +P + +   L    CK    DE + +   +   +   D  +YN ++  L
Sbjct: 339 --FDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGL 396

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SGR    + +++ M+  G   D+  YN L++   + +    A  L+  +   G S N+
Sbjct: 397 SKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNI 456

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           +TYNIL+    + G ++ A  +F  +  KG  P+  TY  ++ GLC+E  L  A  +  K
Sbjct: 457 RTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYK 516

Query: 531 SVNHDVM 537
            VN++ +
Sbjct: 517 MVNNNYL 523


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/543 (21%), Positives = 219/543 (40%), Gaps = 77/543 (14%)

Query: 43  LRDSLSPSLVARVINPYLL------THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL 96
           L+  +S SL ++ I+  LL      +  SL+  FF W    P++ HS  S  +++  L+ 
Sbjct: 21  LKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVELIPDYKHSLQSSWAMIFILTE 80

Query: 97  SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI 156
            +       +L+++          V   ++ S                  ++  D+   I
Sbjct: 81  HKHFKTAQGLLEKIAHKDFISSPLVLNALVTS------------------YDNPDVNAHI 122

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
            + L+ +  +     +A+++ + M   G + +     V +    ++        + D V 
Sbjct: 123 LSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKD-------RLTDTVW 175

Query: 217 KRENSMINGSV-----IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
           K    MI   V     I  ++IH  CK   VE+A +++ E+ ++   PD   Y  +   +
Sbjct: 176 KSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLY 235

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
                 +E   V  +  + GV+P    Y   I G   E ++ EA +L   I         
Sbjct: 236 SRKSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREI--------- 286

Query: 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                                      K   P   T + L    C+ N  +E + + KV+
Sbjct: 287 ---------------------------KDVSPNHVTYTTLIDGYCRVNDFEEALRLCKVM 319

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            A      + +YN ++  LC  GR+R+A  ++ EM  + ++PD    N+L+ A C+   +
Sbjct: 320 EAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLINAYCKIGDM 379

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + A K+  +M  +G   +  TY  LI  F  V ++E A  L   ML+ G++P   TY+ L
Sbjct: 380 KSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGYCTYSWL 439

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGL 566
           ++G C+  N  A   + ++ +     +  S+    +  LC +     A K+     LRG+
Sbjct: 440 VDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQERVGFAEKIYSTMHLRGV 499

Query: 567 SSD 569
           S D
Sbjct: 500 SGD 502


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 173/405 (42%), Gaps = 45/405 (11%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G  + AL++F E   + +  S++ + V I  FC  + L    S+L E+   E    N   
Sbjct: 5   GSHNQALQLFRENPCQ-LPASSVTYNVLIRGFCNASDLDAAFSLLREM-DVEGMQCNDRT 62

Query: 228 IAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
            ++ I+ G C+  RV +A +  D  L +   +PD ++Y  +      +G V   +     
Sbjct: 63  TSI-ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRV---DAAFDL 118

Query: 287 KRKL----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342
            RK+    G  P    Y   + GL  + R+  A+    VI   +                
Sbjct: 119 FRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA---VITEAR---------------- 159

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
                          ++   P + T + L   L +  + DE +  +  ++   Y   + S
Sbjct: 160 ---------------KRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 204

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           +N +++ LC + RL +A  V  EM  +   P++  Y+ +++  C+ D L  A++L D+M 
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 264

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + GC  +L  Y  L+  FS  G ++ AL L   M+ +G  PD  TYT +++ LC+   + 
Sbjct: 265 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVD 324

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            A E+F + V +         S  +   CR        K++R ++
Sbjct: 325 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA 369



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 169/413 (40%), Gaps = 24/413 (5%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
           ++   S  Y  +I       +   AFS+  E+            + +L  L   G +  A
Sbjct: 20  QLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQA 79

Query: 174 LKMFD---EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK-------RENSMI 223
           L+ FD   E++H   +   + +   I   C   KLG+V +  D  RK       R N+  
Sbjct: 80  LEHFDASLELAH--AQPDVVSYTTLINGLC---KLGRVDAAFDLFRKMVAAGGCRPNAFT 134

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             +     ++ G CK  R++ A  V+ E R R+  PD + Y  +      +G V E    
Sbjct: 135 YNA-----LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALAT 189

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
             +  + G  P    +   I GL   RR+ +A E+   ++   F  +    + +I  +  
Sbjct: 190 FTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCK 249

Query: 344 IDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
            D    A    + M+ +G  P L   + L        + D  + + + + +     D+ +
Sbjct: 250 SDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVT 309

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           Y V++  LC  GR+ +A+ + +E+      P+V  Y++L+   CR   +    K+  +M 
Sbjct: 310 YTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM- 368

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
              C  N+ TYN +I   S V   E A  +F  M E G  PDA TY  L   L
Sbjct: 369 --ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 3/243 (1%)

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV-LS 392
           N LI G  ++ D  +A      M  +G      T S + + LC+  +  + +E +   L 
Sbjct: 29  NVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLE 88

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM-KRKGLDPDVSFYNSLMEACCREDLL 451
                 D+ SY  +++ LC  GR+  A+ + ++M    G  P+   YN+L++  C++D L
Sbjct: 89  LAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRL 148

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+ +  +      + ++ TYN L++   ++G ++ AL  F  M E+G  P   ++ ++
Sbjct: 149 DAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAI 208

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           + GLC+   L  A EVFN+ ++ D        S  +  LC+      A +LL  + S+  
Sbjct: 209 ITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGC 268

Query: 572 HSD 574
             D
Sbjct: 269 RPD 271



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 116/250 (46%), Gaps = 5/250 (2%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           P + + + L   LCK  + D   +++ K+++A     +  +YN +V  LC   RL  A  
Sbjct: 94  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           VI E +++   PDV  YN+LM A  +   +  A   + QM   G    L ++N +I+   
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
               +  AL +F+ M+++   P+  TY+ +++GLC+   L  A ++ ++ V+        
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIKWI 599
             +  ++     G    A  LLR + S     D  ++ +++  L     V+ A E  + +
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 600 --QESSPTML 607
              + SP ++
Sbjct: 334 VANKCSPNVV 343


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 172/379 (45%), Gaps = 15/379 (3%)

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
           F    + V +   C   +L   + +L E+ +++  M     +    +H  CK  +V EA 
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREM-EQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           +V+  ++   CKPD + +  +       G + E + VL +  + G A     Y   I GL
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK-GRVPT 364
               R  EA  + + + +   T D    NA+I G   S +   A  F   M ++ G  P 
Sbjct: 135 SSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 365 LSTLSNLSKNLCKRN---KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
             T S L   LCK +   K+DEL++  +++   D    + ++N +V   C +  L  A  
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQ--EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++  M   G  PDV  Y+++++  CR   +     L ++M + GC  ++ TY +L++   
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLC 309

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVM 537
           + G++  A RL   MLE G  P+A TY+ + +GLC+   L  A ++     +K    DV+
Sbjct: 310 KAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVV 369

Query: 538 LARSILSTFMISLCRRGHF 556
              ++L +    L  R  F
Sbjct: 370 AFETLLLSVKKRLLDRAAF 388



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 12/322 (3%)

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS--- 343
           +++ G+AP  + Y  F+  L    ++ EA E+ + +  G    D    N LI  +     
Sbjct: 45  EQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGR 104

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +D    ++  + M   G    L T + L   L    +S E V V + ++      D ++Y
Sbjct: 105 LDEAQQVL--DEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTY 159

Query: 404 NVMVSFLCTSGRLREAYGVIQEMK-RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           N ++   C SG +  AYG ++EMK R G  PD   Y+ L+   C+   LR A +L  +M 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 463 A-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  ++  +N L+  + +  +++ A  L  +MLE G APD  TY+++++GLC+  ++
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
              F +  K V+          +  +  LC+ G  + A +L++ +  D    ++ ++ ++
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
              L    +++MA + +  I++
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRD 361



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 186/446 (41%), Gaps = 81/446 (18%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +Y  ++++  L+ ++ A   +L++++    +    S+Y F + +L +     +A  V   
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 145 VKFN-CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +K   C+   P++   N+L+A L   G +D A ++ DEM   G   + + +   I     
Sbjct: 80  MKDGACK---PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 202 NAKLGQ-VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             + G+ VL M       +    N       IIHGFCK   ++ A+  L+E+        
Sbjct: 137 AGRSGEAVLVMQGMTTTPDTQTYNA------IIHGFCKSGEIDRAYGFLEEM-------- 182

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                                     K++ G +P T  Y   I GL      C++  L +
Sbjct: 183 --------------------------KQRAGCSPDTFTYSILINGL------CKSSNLRK 210

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                     D++L  +IG     D  +++V FN +++                 CK   
Sbjct: 211 A---------DELLQEMIGRK---DCCASVVAFNTLVD---------------GYCKAQD 243

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D   E+   +  +    D+ +Y+ ++  LC  G + + + ++++M  +G  PDV  Y  
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTV 303

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   C+   +  A +L  +M   GC+ N  TY+++     ++ +++ A  L  ++ +KG
Sbjct: 304 LVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFE 526
              D   + +LL  + +    +AAF+
Sbjct: 364 RVTDVVAFETLLLSVKKRLLDRAAFQ 389


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 139/582 (23%), Positives = 243/582 (41%), Gaps = 13/582 (2%)

Query: 8   DLATRISQAIISASNRTRPAR-KWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           DLA  +   ++  + R    R  W+  LE  L    LR +L+PS V  V+          
Sbjct: 53  DLAQELRSHLVRDTCRLLELRDSWSAKLEAQLRHF-LR-ALTPSQVRAVLRAQAQRDARA 110

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A  FF WA +Q  + H+P  +  +L  LS +R  +    V++ +    I   +  +  ++
Sbjct: 111 AFEFFRWADRQWKYRHAPEVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLM 170

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
            S  +    + A  V   ++ +     P+IC  N  + VL   G +D AL+  + M   G
Sbjct: 171 LSYSRAGKLRSAMRVLQLMQKD--GCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVG 228

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           V+   + +   I   C   ++ + L M+  +   +N      +    ++   CK KRV E
Sbjct: 229 VDPDVVTYNCLIKGLCGARRIVEALEMIGSML--QNGCPPDKISYFTVMSFLCKEKRVAE 286

Query: 245 AFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            + +L+ +R      PD I Y ++       G   E    L++            Y   +
Sbjct: 287 VWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIV 346

Query: 304 LGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGR 361
               +  R+ EAKE+ GE+I  G    D    +A++     I +   A      M + G 
Sbjct: 347 HSFCLNGRMSEAKEIIGEMISKG-CRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGC 405

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P   T + L   LCK  KS E  E+        +     +Y+V++      G+L E+  
Sbjct: 406 KPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCD 465

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V+ +M +KG  P     N L+ A C+E     AK   +Q  + GC  N+  +  +I  FS
Sbjct: 466 VVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFS 525

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
             G++E AL L  +M      PD  TYT +++ L ++  ++ A  +  K +N  ++    
Sbjct: 526 RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPV 585

Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583
              T +   C +G       LL  + +  G S ++  +++ L
Sbjct: 586 TYRTVIHRYCEKGAVEDLLNLLDKMLTKQGFSSAYNQVIEKL 627



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/451 (19%), Positives = 186/451 (41%), Gaps = 53/451 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143
           +SY +++  L   +++  + ++L++++ +  I  D   Y  +I  L +  +  +A +   
Sbjct: 269 ISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLR 328

Query: 144 EV---KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           E    +F  + +G    ++++     +G +  A ++  EM  +G     + +   +  FC
Sbjct: 329 ESEGKRFRVDQVGY---SAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFC 385

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
              +L Q   M+  + K  N     +V    +++G CK  +  EA+++L++       P 
Sbjct: 386 RIGELDQARKMMKHMYK--NGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPS 443

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
            I Y ++   F+  G + E   V+ +  + G  P   +    I  L  E++   AK+  E
Sbjct: 444 GITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFME 503

Query: 321 ---------------VIVSGKFTIDDDVLNAL------------------------IGSV 341
                           ++ G F+   D+ +AL                        +G  
Sbjct: 504 QCQSKGCFINVVNFTTVIHG-FSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRK 562

Query: 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401
             +   +A+V    M+ +G +PT  T   +    C++   ++L+ +   +     F+   
Sbjct: 563 GKMKEATALV--EKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTKQGFSS-- 618

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           +YN ++  LC  G+L EAY ++ ++ R     D    + LM++     L   +  +  +M
Sbjct: 619 AYNQVIEKLCAFGKLSEAYNLLSKVLRSASKRDAQTCHILMDSFLNRGLPLQSYNVACRM 678

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           F      +LK    + S+ + VGE   A +L
Sbjct: 679 FQRNLIPDLKLCQKVDSQLALVGERHAAGKL 709


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 184/439 (41%), Gaps = 58/439 (13%)

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV--LIIHGFCKGKRVEEA 245
           S   +G  +   C   +  +   ++ E +  +  M  GS++ +  L++ GF + + V+EA
Sbjct: 13  SEFTYGTLVHGHCLAGEFDEAKRLVAEFK--DTGMSPGSLVVLHNLMLKGFSEARLVDEA 70

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              L  +   +CKP+ ++Y  + +     G + E    L+   K GVAP    Y     G
Sbjct: 71  KSHLHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATG 127

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALI--------------------------- 338
           L     + EA EL  V+ S  F +     N ++                           
Sbjct: 128 LGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPN 187

Query: 339 ---------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                        +  P  A+   + M+E G  PT+ T + L +  C  ++ D   E+ +
Sbjct: 188 ILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLE 247

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            ++ +    +  +Y++MV      GR+ EA   ++++   G  P++   N+ +   C+  
Sbjct: 248 TMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTG 307

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +    M   GC  N  TYN L+  F ++G ++ A R+   M+ +G  PD+TTY+
Sbjct: 308 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYS 367

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            L++GLC    +  AF V  + V   V  AR   +TF+             KL+  L  +
Sbjct: 368 VLIQGLCSAGQIVHAFMVMLQ-VTRAVESARPDPATFV-------------KLIEKL-CE 412

Query: 570 LGHSDSHVILLKSLADARE 588
           LG  D   ++L+ + D  E
Sbjct: 413 LGEMDRAALVLERMGDEHE 431



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/442 (18%), Positives = 167/442 (37%), Gaps = 115/442 (26%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQK 137
           F HS  +Y +++    L+ + +    ++ + K   ++  S V  +  ++    + +   +
Sbjct: 10  FVHSEFTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEARLVDE 69

Query: 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV------------ 185
           A S  +  + +C+       N+L+  L S G I  A +    M+ RGV            
Sbjct: 70  AKSHLH--RMDCKPNSVSY-NTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMAT 126

Query: 186 -----------------------EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
                                    + + F   +   C++ K  +   +++ +  R    
Sbjct: 127 GLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRN--- 183

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAF----------------------------------- 246
           I  +++ + LI+H FCK  R EEA                                    
Sbjct: 184 IEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAA 243

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           ++L+ +   +CKP+F+ Y I+ ++F  MG + E    L++    G AP       ++ GL
Sbjct: 244 ELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGL 303

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                     + GE+ ++ +                         F   M E+G     +
Sbjct: 304 C---------KTGEMDLASR-------------------------FLTVMAEEGCRANTA 329

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T ++L +  CK  + DE   V + + A     D  +Y+V++  LC++G++  A+ V+ ++
Sbjct: 330 TYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVHAFMVMLQV 389

Query: 427 KR--KGLDPDVSFYNSLMEACC 446
            R  +   PD + +  L+E  C
Sbjct: 390 TRAVESARPDPATFVKLIEKLC 411



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 44/250 (17%), Positives = 110/250 (44%), Gaps = 15/250 (6%)

Query: 50  SLVARVINPYLLTHHSLALGFFNWASQQP-----------NFTHSPLSYHSILKSLSLSR 98
           +++ R I P +LT + +   F   A  +             F  + ++++++L+    + 
Sbjct: 178 TMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTD 237

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158
           Q+++   +L+ +  +K   +   Y  ++    +     +A +   ++          +CN
Sbjct: 238 QMDSAAELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCN 297

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           + +A L   G +D A +    M+  G   +T  +   +  FC+  ++ +   +L+E+   
Sbjct: 298 AYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIA- 356

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR--IRECKPDFIAYRIVAEEFKLMGS 276
           E S+ + +  +VL I G C   ++  AF V+ ++   +   +PD   +  + E+   +G 
Sbjct: 357 EGSLPDSTTYSVL-IQGLCSAGQIVHAFMVMLQVTRAVESARPDPATFVKLIEKLCELGE 415

Query: 277 VFEREVVLKK 286
           +    +VL++
Sbjct: 416 MDRAALVLER 425


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 200/469 (42%), Gaps = 42/469 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++   +      A D   K+ K    TL++ +Y  II +  Q  N  +A ++  E
Sbjct: 339 VTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVRE 398

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++    D   +I ++++      G  +  L +FD +   G   S I +G  I  + +  K
Sbjct: 399 MEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGK 458

Query: 205 LGQVL--SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           + + L  S + EV   +++M   S    ++I+GF + K    AF V +++     KPD +
Sbjct: 459 VSKALEVSKMMEVAGIKHNMKTYS----MLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 514

Query: 263 AYRIVAEEFKLMGSV----------------------------FEREVVLKKK------- 287
            Y  +   F  MG++                            F R   +++        
Sbjct: 515 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 574

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLNALIGSVSSIDP 346
           R  G  P  + +   ILGL+ + ++ +A E L E+ ++G    +      + G  S  D 
Sbjct: 575 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 634

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A  +F  +  +G    + T   L K  CK  +    + V + +S+     +   YN++
Sbjct: 635 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 694

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +      G + EA  ++Q+MK++G+ PD+  Y S + ACC+   ++ A K   +M   G 
Sbjct: 695 IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGV 754

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
             N+KTY  LI  ++     E AL+ F  M   G+ PD   Y  L+  L
Sbjct: 755 KPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 803



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/490 (18%), Positives = 200/490 (40%), Gaps = 5/490 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    ++ AL    +M   G+E S + + + +  F + A          E 
Sbjct: 305 VYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEA 364

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           ++R  ++   ++I   II+  C+   + +A  ++ E+           Y  + + + ++G
Sbjct: 365 KERHTTL--NAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIG 422

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
           +  +  +V  + ++ G  P    Y   I   I   ++ +A E+ +++       +    +
Sbjct: 423 NEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYS 482

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI G V   D  +A   F  +++ G  P +   +N+ +  C     D  +   K +   
Sbjct: 483 MLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 542

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
            +     ++  ++     SG +R A  +   M+  G  P V  +N+L+     +  +  A
Sbjct: 543 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKA 602

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            ++ D+M  +G S N  TY  ++  ++ +G+   A   F  +  +G+  D  TY +LL+ 
Sbjct: 603 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 662

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            C+   +Q+A  V  +  +  +     + +  +    RRG    A +L++ +  +    D
Sbjct: 663 CCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPD 722

Query: 575 SHVI--LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLH 632
            H     + +   A +++ A + I+ ++        +    L    + +S PE  L    
Sbjct: 723 IHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQ 782

Query: 633 ALQEKCLDSE 642
            ++   L  +
Sbjct: 783 EMKSAGLKPD 792



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 94/462 (20%), Positives = 183/462 (39%), Gaps = 50/462 (10%)

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
              + ++   I   S VY  +I +   G++ ++A S   ++K    ++     + L+   
Sbjct: 289 GTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGF 348

Query: 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224
           A     + A   F E   R    + I +G  I+  C+   + Q  ++   VR+ E   I+
Sbjct: 349 AKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEAL---VREMEEEGID 405

Query: 225 GSV-IAVLIIHGFCKGKRVEEAFKVLDELRIREC--KPDFIAYRIVAEEFKLMGSVFERE 281
             + I   ++ G+      E+   V D  R++EC   P  I+Y  +   +  +G V +  
Sbjct: 406 APIDIYHTMMDGYTIIGNEEKCLIVFD--RLKECGFTPSVISYGCLINLYIKIGKVSKAL 463

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID----DDVLNAL 337
            V K     G+      Y   I G +  +    A  + E +V      D    ++++ A 
Sbjct: 464 EVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAF 523

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            G + ++D   AI     M ++   PT  T   +     +       +E++ ++  +   
Sbjct: 524 CG-MGNMD--RAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCI 580

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP------------------------ 433
             + ++N ++  L    ++ +A  ++ EM   G+ P                        
Sbjct: 581 PTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEY 640

Query: 434 -----------DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
                      DV  Y +L++ACC+   ++ A  +  +M +     N   YNILI  ++ 
Sbjct: 641 FTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWAR 700

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
            G++  A  L   M ++GV PD  TYTS +   C+  ++Q A
Sbjct: 701 RGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRA 742



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/405 (19%), Positives = 161/405 (39%), Gaps = 48/405 (11%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           FT S +SY  ++       +++    V K ++V  I  +   Y  +I   ++ K+   AF
Sbjct: 439 FTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAF 498

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           +VF +V    + + P++   N+++      G +D A++   EM       +T  F   I 
Sbjct: 499 AVFEDVVK--DGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 556

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELR 253
            F  +  + + L + D +R       +G +  V     +I G  +  ++E+A ++LDE+ 
Sbjct: 557 GFARSGDMRRALEIFDMMR------WSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 610

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
           +    P+   Y  +   +  +G   +      K +  G+      Y   +       R+ 
Sbjct: 611 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 670

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
            A  +   + S K                   PR+  V +N +I+               
Sbjct: 671 SALAVTREMSSQKI------------------PRNTFV-YNILID--------------- 696

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
              +R    E  E+ + +       D+ +Y   ++  C +G ++ A   IQEM+  G+ P
Sbjct: 697 GWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKP 756

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           ++  Y +L+    R  L   A K + +M ++G   +   Y+ L++
Sbjct: 757 NIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMT 801



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%)

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           + + +MV++    G +  A G  + M+ +G++P    Y SL+ A      +  A     +
Sbjct: 269 KEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRK 328

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   +L TY+IL+  F+++ + E A   F    E+    +A  Y +++   CQ  N
Sbjct: 329 MKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACN 388

Query: 521 LQAA 524
           +  A
Sbjct: 389 MTQA 392



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A+  I++  RK     V++Y        R   +  A+  ++ M A G       Y  LI
Sbjct: 258 QAFERIKKPSRKEFGLMVTYY-------ARRGDMHHARGTFESMRARGIEPTSHVYTSLI 310

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             ++   ++E AL     M E+G+     TY+ L+ G  +  + +AA   F ++      
Sbjct: 311 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTT 370

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           L   I    + + C+  +   A  L+R +  +
Sbjct: 371 LNAIIYGNIIYAHCQACNMTQAEALVREMEEE 402



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           ++K   + LD   Y  ++ +  +    Q A +V  E+          + N L+   A  G
Sbjct: 643 KLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRG 702

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV- 227
            +  A ++  +M   GV+     +  FI   C   K G +      +++ E   +  ++ 
Sbjct: 703 DVWEAAELMQQMKQEGVQPDIHTYTSFINACC---KAGDMQRATKTIQEMEVVGVKPNIK 759

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI----------VAEEFKLMGSV 277
               +IHG+ +    E+A K   E++    KPD   Y            VAEE+   G V
Sbjct: 760 TYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVV 819


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 11/348 (3%)

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
           F    + V +   C   +L   + +L E+ +++  M     +    +H  CK  +V EA 
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREM-EQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           +V+  ++   CKPD + +  +       G + E + VL +  + G A     Y   I GL
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK-GRVPT 364
               R  EA  + + + +   T D    NA+I G   S +   A  F   M ++ G  P 
Sbjct: 135 SSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 365 LSTLSNLSKNLCKRN---KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
             T S L   LCK +   K+DEL++  +++   D    + ++N +V   C +  L  A  
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQ--EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++  M   G  PDV  Y+++++  CR   +     L ++M + GC  ++ TY +L++   
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLC 309

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + G++  A RL   MLE G  P+A TY+ + +GLC+   L  A ++  
Sbjct: 310 KAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLT 357



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 12/322 (3%)

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS--- 343
           +++ G+AP  + Y  F+  L    ++ EA E+ + +  G    D    N LI  +     
Sbjct: 45  EQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGR 104

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
           +D    ++  + M   G    L T + L   L    +S E V V + ++      D ++Y
Sbjct: 105 LDEAQQVL--DEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTY 159

Query: 404 NVMVSFLCTSGRLREAYGVIQEMK-RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           N ++   C SG +  AYG ++EMK R G  PD   Y+ L+   C+   LR A +L  +M 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 463 A-SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
               C  ++  +N L+  + +  +++ A  L  +MLE G APD  TY+++++GLC+  ++
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVIL 579
              F +  K V+          +  +  LC+ G  + A +L++ +  D    ++ ++ ++
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 580 LKSLADAREVEMAIEHIKWIQE 601
              L    +++MA + +  I++
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRD 361



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 186/446 (41%), Gaps = 81/446 (18%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +Y  ++++  L+ ++ A   +L++++    +    S+Y F + +L +     +A  V   
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 145 VKFN-CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
           +K   C+   P++   N+L+A L   G +D A ++ DEM   G   + + +   I     
Sbjct: 80  MKDGACK---PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 202 NAKLGQ-VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
             + G+ VL M       +    N       IIHGFCK   ++ A+  L+E+        
Sbjct: 137 AGRSGEAVLVMQGMTTTPDTQTYNA------IIHGFCKSGEIDRAYGFLEEM-------- 182

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320
                                     K++ G +P T  Y   I GL      C++  L +
Sbjct: 183 --------------------------KQRAGCSPDTFTYSILINGL------CKSSNLRK 210

Query: 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
                     D++L  +IG     D  +++V FN +++                 CK   
Sbjct: 211 A---------DELLQEMIGRK---DCCASVVAFNTLVD---------------GYCKAQD 243

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D   E+   +  +    D+ +Y+ ++  LC  G + + + ++++M  +G  PDV  Y  
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTV 303

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   C+   +  A +L  +M   GC+ N  TY+++     ++ +++ A  L  ++ +KG
Sbjct: 304 LVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFE 526
              D   + +LL  + +    +AAF+
Sbjct: 364 RITDVVAFEALLLSVKKRLLDRAAFQ 389


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/496 (21%), Positives = 216/496 (43%), Gaps = 16/496 (3%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI- 100
           LR  +   +++ V+N   L H +  LGF   A   +     + + ++++L+ L    ++ 
Sbjct: 101 LRIPVHEFILSIVVNSCCLMHRT-DLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVK 159

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           +A+    K V+ N    +  +Y  ++  L +  +TQKAF +   ++         I + +
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIV 219

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     DG +D A  + +EM  + +      +   I   C+       LS  + VR    
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCK-------LSQWENVRTLFL 272

Query: 221 SMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            MI+ ++   +     +I G CK  +VE+A +++  +  +   PD I Y ++ + + L G
Sbjct: 273 EMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRG 332

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V     +        + P    Y   I G   +++I EA ++   I            N
Sbjct: 333 QVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCN 392

Query: 336 ALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+  +  +   +SA  FF+ M+  G +P L T   L     K    +E +  +  L   
Sbjct: 393 VLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERR 452

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
              T+++ Y  ++  LC +G+L +A+   +++   GL PDV  Y +++   C+E LL  A
Sbjct: 453 REDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K +  +M  +GC  + +TYN+++  F    ++         +  K  + +A T   L++ 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 515 LCQETNLQAAFEVFNK 530
           + ++ +L      F++
Sbjct: 573 IAEDPSLLNMIPEFHR 588



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 300 REFILGLIVERR-ICEAKELGEVIVSGKFT----IDDDVLNALI-GSVSSIDPRSAIVFF 353
            EFIL ++V    +    +LG  +++  F      +  + N L+ G  +    + A+  F
Sbjct: 106 HEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLF 165

Query: 354 NFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
             ++ +    P       +   LCK+  + +  ++ +++       +   Y++++   C 
Sbjct: 166 KKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCK 225

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G L  A  ++ EMK+K + PD+  Y++L++A C+       + L+ +M       N+ T
Sbjct: 226 DGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCT 285

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           +N +I    + G++E A  +   M+EKGV PD  TY  +++G      +  A E+F+  +
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMI 345

Query: 533 NHDV 536
           N  +
Sbjct: 346 NKSI 349



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 100/210 (47%), Gaps = 2/210 (0%)

Query: 357 IEKGRVPTLS-TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           I K R+P     LS +  + C  +++D    V  +        +   +N ++  L    +
Sbjct: 98  IHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENK 157

Query: 416 LREAYGVIQEMKRKGL-DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           +++A  + +++ R+ + +P+   Y ++M   C++   + A  L   M       N   Y+
Sbjct: 158 VKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYS 217

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           I+I  F + G ++GA  L + M +K + PD  TY++L++ LC+ +  +    +F + ++ 
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL 277

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR 564
           ++       ++ +  LC+ G    A +++R
Sbjct: 278 NIYPNVCTFNSVIDGLCKEGKVEDAEEIMR 307


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/519 (21%), Positives = 216/519 (41%), Gaps = 24/519 (4%)

Query: 4   RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
           +  +++A  + + I     R++P  +W   L          D   PS  + ++    L +
Sbjct: 55  KDVSEIAAEVGKVI-----RSKP--RWEQSLLSDYPSFNFHD---PSFFSELLKQ--LNN 102

Query: 64  HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
             L+L FF W S QP F   P+S + +  +L  ++      S L   + +        Y 
Sbjct: 103 VFLSLRFFLWLSSQPEFLPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENY- 161

Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
             I  + +G   ++A   F+ +K        E  N         G  D   K+++ M   
Sbjct: 162 --IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMET 219

Query: 184 GVE----FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           GV+      T+G+   I  FC + K+ +   +L +    E+ +   +     +I GFCK 
Sbjct: 220 GVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQ--SLEDGLTPCNDAFNKLISGFCKE 275

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
           K      +++  + ++   PD   Y+ +   F       +   V    +  G AP    Y
Sbjct: 276 KNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMY 335

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIE 358
              I G     ++ +A +L   ++   F  ++   N LI     I +   A+  +  M++
Sbjct: 336 TTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLD 395

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G   T  + + L   LC   ++DE  + ++ +   +   D+ +YN ++   C  G++ +
Sbjct: 396 SGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQ 455

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           +  +++E++ KGL P  S Y  L++  C+   ++ AK++W+ M   G    + T + +IS
Sbjct: 456 STDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIIS 515

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              E G +   +     ML+  + P   T+  L++ L Q
Sbjct: 516 GLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQ 554



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 8/241 (3%)

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           +E G  P     + L    CK      ++E+   +   +   D+ +Y  +++  C +   
Sbjct: 254 LEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMT 313

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            +A+ V   +K +G  PD+  Y +L+   C+   L  A KLW +M   G   N  +YN L
Sbjct: 314 LQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTL 373

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  F ++G ++ A++L+  ML+ G      +  +L+ GLC       A++ F +    ++
Sbjct: 374 IYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 433

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGL--------SSDLGHSDSHVILLKSLADARE 588
           +      +T +   CR G  L +T LL+ L        +S   H    +  L S+ +A+E
Sbjct: 434 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKE 493

Query: 589 V 589
           +
Sbjct: 494 M 494



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 18/377 (4%)

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE---EFKLMGSVFE-REVVLKKKR 288
           I   C+G  VEEA    D L+    +P    +    +   +F     +++  E +++   
Sbjct: 162 IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGV 221

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
           +  V   T  Y   I     + ++  A E+    +    T  +D  N LI G     +  
Sbjct: 222 QKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHH 279

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
             +   + MI K R P + T   +    CK   + +  EV+  L    Y  DM  Y  ++
Sbjct: 280 RVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLI 339

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C  G+L +A  +  EM  KG  P+   YN+L+   C+   L  A KL+ +M  SG  
Sbjct: 340 HGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYK 399

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
               + N LI      G  + A   F  M  K +  D  TY +L++G C+E  +  + ++
Sbjct: 400 ETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDL 459

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKS 582
             +     +  + S  +  +  LC+ G    A ++      RGL   +   D H+I    
Sbjct: 460 LKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRD-HII---- 514

Query: 583 LADAREVEMAIEHIKWI 599
            +   E    +E ++W+
Sbjct: 515 -SGLCEQGYVVEGMEWL 530


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 194/449 (43%), Gaps = 36/449 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y  ++   +      + D++ K+ K    +L+  +Y  II +  Q  N ++A  +  E
Sbjct: 334 VTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCE 393

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           ++ +  D   ++ +S++         +  L +F+ +   G + S I +G  +  + +  K
Sbjct: 394 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 453

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           + + LS+  E+      + + +    ++I+GF        AF + +E+     +PD   Y
Sbjct: 454 VAKALSISKEMES--CGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 511

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            ++ E F  MG++     +L+K +K  + P    +R  I G  V                
Sbjct: 512 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV---------------- 555

Query: 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                             + D +SA+   + M   G VPT+ T + L   L +++K    
Sbjct: 556 ------------------AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 597

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
           V V   +S      +  +Y +++     SG + +A+    ++K  GL  DV  Y +L+ A
Sbjct: 598 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 657

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
           CC+   ++ A  +  +M       N   YNILI  ++  G++  A  L   M E GV P+
Sbjct: 658 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPN 717

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533
             TYTS +   C+  ++Q A +V  + V+
Sbjct: 718 IHTYTSYINACCKAGDMQRAEKVIEEMVD 746



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 177/416 (42%), Gaps = 5/416 (1%)

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           +  SL+   A    +  AL   +EM   G+E + + + + I  F +        ++  E 
Sbjct: 300 VFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA 359

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           + + +S+ NG +I   IIH  C+   +E A +++ E+           Y  +   + ++ 
Sbjct: 360 KTKLSSL-NG-IIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQ 417

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVL 334
           +  +  VV ++ ++ G  P    Y   +L L V+  ++ +A  + + + S     ++   
Sbjct: 418 NENKCLVVFERLKECGFKPSIISY-GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTY 476

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           + LI G +   D  +A   F  M+  G  P  +  + L +  CK    D  + + + +  
Sbjct: 477 SMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQK 536

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                   ++  ++     +G ++ A   +  M+R G  P V  YN+L+    R+  ++ 
Sbjct: 537 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 596

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A  + D+M  +G + N  TY I++  ++  G+I  A   F  + E G+  D   Y +LL 
Sbjct: 597 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 656

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
             C+   +Q+A  V  +     +     I +  +    RRG    A  L++ +  D
Sbjct: 657 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 712



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/444 (19%), Positives = 178/444 (40%), Gaps = 61/444 (13%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138
            F  S +SY  +L       ++    S+ K+++   I  ++  Y  +I   I   +   A
Sbjct: 433 GFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANA 492

Query: 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
           F++F E+  +       I N L+      G +D A+ + ++M    ++ S   F   I  
Sbjct: 493 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 552

Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVL----IIHGFCKGKRVEEAFKVLDELRI 254
           +     +   L  LD +R+      +G V  V+    +IHG  +  +V+ A  VLD++ I
Sbjct: 553 YAVAGDMKSALDTLDLMRR------SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 606

Query: 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314
               P+   Y I+   +   G + +      K ++ G+      Y   +      R  C+
Sbjct: 607 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLL------RACCK 660

Query: 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
           +  +   +   +             S   I PR+  + +N +I+                
Sbjct: 661 SGRMQSALAVTREM-----------SFQKI-PRNTFI-YNILID---------------G 692

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             +R    E  ++ K +  +    ++ +Y   ++  C +G ++ A  VI+EM   GL P+
Sbjct: 693 WARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 752

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           V  Y +L++   R  L   A K +++M  +G   +  +Y+ L++                
Sbjct: 753 VKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT---------------- 796

Query: 495 NMLEKGVAPDATTYTSLLEGLCQE 518
           ++L +    + +TYT ++  +C+E
Sbjct: 797 SLLSRATVMEGSTYTGII-SVCRE 819



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%)

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           + +M+ +    G    A    + M+ +G++P+   + SL+ A      +R A    ++M 
Sbjct: 266 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 325

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
           + G    + TY+ILIS F+++ + + A  LF     K  + +   Y++++   CQ  N++
Sbjct: 326 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 385

Query: 523 AAFEV 527
            A E+
Sbjct: 386 RAEEL 390


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 179/401 (44%), Gaps = 6/401 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N +L  L     ++ AL++F+EM    V  +   + + I   C   KL   L + D++  
Sbjct: 129 NCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDM-- 185

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E + +  +V+ V ++I   CK +++EEA  + + +  + C P+ + +  + +     G 
Sbjct: 186 -ERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGR 244

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V +   + +K    G  P    Y   I       R  +  ++ + +V    + D  ++N 
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT 304

Query: 337 LIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
            +  V  + +       F  +   G +P   + S L   L K   ++E  E++  +    
Sbjct: 305 YMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQG 364

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +YN ++   C SG++ +AY +++EMK KG  P V  Y S+++   + D L  A 
Sbjct: 365 CVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAY 424

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+++  ++G   N+  Y+ LI  F +VG I+ A  +   +++KG+ P+  T+  LL+ L
Sbjct: 425 MLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 484

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            +   +  A   F    +      +   S  +  LCR   F
Sbjct: 485 VKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF 525



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 117/566 (20%), Positives = 236/566 (41%), Gaps = 50/566 (8%)

Query: 10  ATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPS--LVARV----INPYLLTH 63
           ++ IS  +++   ++R  R+   ++ QT+ +   R + S    L+ +V    + P++L  
Sbjct: 9   SSNISIELVANCVKSRKLREAFDII-QTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCK 67

Query: 64  HSL---ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
            +    A+  F    Q         +Y++++     + + +    +L++ K         
Sbjct: 68  ANRLDEAVELFEQLEQNRK-VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVI 126

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFD 178
            Y  I+  L + +  ++A  +F E+K    D  P +   N L+ +L  +G ++ AL++ D
Sbjct: 127 AYNCILTCLGKKRRVEEALRIFEEMK---RDAVPNVPTYNILIDMLCREGKLNAALEIRD 183

Query: 179 EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-------------------- 218
           +M   G+  + +   + I + C+  KL +  S+ + +  +                    
Sbjct: 184 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 243

Query: 219 -------------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
                        +   + G+++   +I  F K  R E+  K+  E+    C PD     
Sbjct: 244 RVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLIN 303

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
              +     G   +   + ++    G  P    Y   I GL+      E  EL   +   
Sbjct: 304 TYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQ 363

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
              +D    NA+I G   S     A      M  KG  PT+ T  ++   L K ++ DE 
Sbjct: 364 GCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEA 423

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
             +++   +N    ++  Y+ ++      GR+ EAY +++E+ +KGL P+V  +N L++A
Sbjct: 424 YMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 483

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             + + +  A   +  M    C  N  TY+ILI+    V +   A   +  M + G+ P+
Sbjct: 484 LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPN 543

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNK 530
             TYT+++ GL +  N+  A  +F++
Sbjct: 544 TITYTTMISGLAKAGNILEASGLFSR 569



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 160/366 (43%), Gaps = 33/366 (9%)

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
           S I++ ++    K +++ EAF ++  +R  + +P F AY I+  +  LM           
Sbjct: 10  SNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLM----------- 58

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVS 342
                           F   L    R+ EA EL E +   +        N +I   GS  
Sbjct: 59  --------------LLFPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAG 104

Query: 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES 402
             D   A         KG +P++   + +   L K+ + +E + +++ +   D   ++ +
Sbjct: 105 KFD--EAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK-RDAVPNVPT 161

Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462
           YN+++  LC  G+L  A  +  +M+R GL P+V   N +++  C+   L  A  +++ M 
Sbjct: 162 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 221

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522
              C+ N  T++ LI    + G ++ A  L+  ML+ G  P A  YTSL+    +    +
Sbjct: 222 DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 281

Query: 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILL 580
              +++ + V+       ++++T+M  + + G       L R +++   +  + S+ IL+
Sbjct: 282 DGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILI 341

Query: 581 KSLADA 586
             L  A
Sbjct: 342 HGLVKA 347



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 194/447 (43%), Gaps = 59/447 (13%)

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
           +F W  C+  +L + + + +++   +N  +  +     +I G+    + +EA+ +L+  +
Sbjct: 60  LFPWVLCKANRLDEAVELFEQLE--QNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQK 117

Query: 254 IRECKPDFIAY----------RIVAEEFKLMGSVFEREVV------------LKKKRKLG 291
            +   P  IAY          R V E  ++   + +R+ V            L ++ KL 
Sbjct: 118 AKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLN 176

Query: 292 VAPRTNDYRE--------FILGLIVERRICEAKELGEV--IVSGKFTIDDDVL--NAL-- 337
            A    D  E          + ++++ R+C+A++L E   I  G   +DD V   NA+  
Sbjct: 177 AALEIRDDMERAGLFPNVLTVNIMID-RLCKAQKLEEACSIFEG---MDDKVCTPNAVTF 232

Query: 338 ------IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
                 +G    +D   A   +  M++ G VP     ++L ++  K  + ++  ++YK +
Sbjct: 233 SSLIDGLGKCGRVD--DAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 290

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
                  D+   N  +  +  +G   +   + +E+   G  PD   Y+ L+    +  L 
Sbjct: 291 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 350

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
               +L+  M   GC  +   YN +I  F + G++  A +L   M  KG  P   TY S+
Sbjct: 351 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----FLVATKLL-RGL 566
           ++GL +   L  A+ +F ++ ++ + L   + S+ +    + G     +L+  +L+ +GL
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 470

Query: 567 SSDLGHSDSHVILLKSLADAREVEMAI 593
           + ++   +    LL +L  A E+  A+
Sbjct: 471 TPNVYTWNC---LLDALVKAEEINEAL 494



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 190/444 (42%), Gaps = 9/444 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           L+ + ++  L  ++++    S+ + +     T ++  +  +I  L +      A+S++ +
Sbjct: 195 LTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 254

Query: 145 VKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           +  +C  + G  +  SL+      G  ++  K++ EM H G          ++    +  
Sbjct: 255 M-LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAG 313

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           +  +  ++  E+    +  I  +    ++IHG  K     E +++   ++ + C  D  A
Sbjct: 314 ETEKGRALFREINA--HGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHA 371

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  V + F   G V +   +L++ +  G  P    Y   I GL    R+ EA  L E   
Sbjct: 372 YNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 431

Query: 324 SGKFTIDDDVLNALI---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           S    ++  V ++LI   G V  ID   A +    +++KG  P + T + L   L K  +
Sbjct: 432 SNGIKLNVVVYSSLIDGFGKVGRID--EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 489

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            +E +  ++ +       +  +Y+++++ LC   +  +A+   QEM++ GL P+   Y +
Sbjct: 490 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 549

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++    +   +  A  L+ +  A+G   +  +YN +I   S   +   A  LF     KG
Sbjct: 550 MISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 609

Query: 501 VAPDATTYTSLLEGLCQETNLQAA 524
                 T   LL+ L +   L+ A
Sbjct: 610 CNIHTKTCVVLLDALHKAECLEQA 633


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 210/475 (44%), Gaps = 12/475 (2%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           +S S++  V N Y L H             +     + ++++++L  L    ++     +
Sbjct: 95  ISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVL 154

Query: 107 LKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
            K++   KI   + V Y  ++  L +  +T+K  S+   ++           + ++  L 
Sbjct: 155 FKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALC 214

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
            D  +D A+ + +EM  + +  +   +   I   C+  +  +V ++L E+    N  IN 
Sbjct: 215 KDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEM---VNLNINP 271

Query: 226 SVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           +V    ++I G CK  +VE+A +V+  +  +  +PD I Y  + + + L G V     V 
Sbjct: 272 NVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVF 331

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSG---KFTIDDDVLNALIGS 340
              R  G+ P    Y   I G   ++ + +A +L GE+   G          +L+ LI  
Sbjct: 332 NVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLI-E 390

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V  I     I  F+ M+  G  P +   S L     K    +E + ++  L  N   T++
Sbjct: 391 VGRIGDAKKI--FDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNI 448

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             Y V+++ LC + R+REA+ + +++   GL PDV  YN ++   CRE L    K +  +
Sbjct: 449 SFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRK 508

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           M  +GC  N  TYN+++  F    +I   +     M  +G + DATT   L+  L
Sbjct: 509 MEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVL 563



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/498 (19%), Positives = 211/498 (42%), Gaps = 57/498 (11%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV- 141
           S + +  + K++   +  +A+ S+ +++++  I +  S+   +  S         AFSV 
Sbjct: 61  SVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVL 120

Query: 142 ---------FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIG 191
                    FN V FN          +LL  L ++  + +A+ +F ++    + E + + 
Sbjct: 121 PIYLKTGIPFNVVTFN----------TLLGGLFAENKVTDAVVLFKKLVREKICEPNEVM 170

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +G  +    +     + LS+L  + ++ N+  +    ++ +I   CK   ++ A  +L+E
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLL-RIMEQGNTKPDVRTYSI-VIDALCKDINLDAAINLLNE 228

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++ +   P+   Y  + +    +G   + + +L +   L + P  + +   I GL  E +
Sbjct: 229 MKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGK 288

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
           + +A E+                                     MIEKG  P + T S +
Sbjct: 289 VEDADEV----------------------------------MRHMIEKGVEPDIITYSAI 314

Query: 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
               C R + D    V+ VL       ++ SY+++++  C    L +A  +  E+ +KGL
Sbjct: 315 MDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374

Query: 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491
            PD   Y++++        +  AKK++D+M   G + ++  ++ L+  + + G +E A+ 
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAML 434

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           LF  +       + + YT ++ GLC+   ++ A  +F K  +  ++      +  +   C
Sbjct: 435 LFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFC 494

Query: 552 RRGHFLVATKLLRGLSSD 569
           R G F     +LR +  +
Sbjct: 495 REGLFDEVKGILRKMEDN 512



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 177/373 (47%), Gaps = 24/373 (6%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR----KRENSMING 225
           +D+A+ +F  M       S I F               V+S+  E+R       +S++N 
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILN- 101

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE---- 281
                ++ + +C   R++ AF VL  + ++   P    + +V     L+G +F       
Sbjct: 102 -----IVTNSYCLRHRIDCAFSVL-PIYLKTGIP----FNVVTFN-TLLGGLFAENKVTD 150

Query: 282 -VVLKKK--RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
            VVL KK  R+    P    Y   + GL       +   L  ++  G    D    + +I
Sbjct: 151 AVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVI 210

Query: 339 GSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            ++   I+  +AI   N M +K   P + T ++L   LCK  + +++  +   +   +  
Sbjct: 211 DALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNIN 270

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ ++++++  LC  G++ +A  V++ M  KG++PD+  Y+++M+  C    +  A+++
Sbjct: 271 PNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRV 330

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           ++ +   G   N+ +Y+ILI+ + +   +  A++LF  + +KG+ PD  TY+++L GL +
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 518 ETNLQAAFEVFNK 530
              +  A ++F++
Sbjct: 391 VGRIGDAKKIFDE 403


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 191/424 (45%), Gaps = 35/424 (8%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A L   G   +ALK+FDEM   GV  + I +   I    +   L          R 
Sbjct: 20  NVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGF------RL 73

Query: 218 RENSMINGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE---- 269
           R+  + +G     V   +++ G C+  R++E   ++DE+      PD   Y I+ +    
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 270 --EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL--GLIVERRICEAKELGEVIVSG 325
             E + M S+F     LKK   LG       Y   IL  GL  + ++ +A+++ E++V  
Sbjct: 134 TGESRTMLSLFAES--LKKGVMLGA------YTCSILLNGLCKDGKVAKAEQVLEMLVHT 185

Query: 326 KFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
                  + N LI     + D R A   F  M  +   P   T + L   LCK     + 
Sbjct: 186 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 245

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            ++   +  +     +E++N ++    T+G+L + + V+ +M++KG+  DV  + S+++A
Sbjct: 246 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 305

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
            C+   +  A  + D M     + N + YN +I  + E G+ E A  L   M   GV+  
Sbjct: 306 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSAS 365

Query: 505 ATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
             TY  LL+GLC+ + +  A E+     N+ +  DV+   +I+S    + C +G    A 
Sbjct: 366 IVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS----ACCNKGDTDKAL 421

Query: 561 KLLR 564
           +LL+
Sbjct: 422 ELLQ 425



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/431 (20%), Positives = 183/431 (42%), Gaps = 7/431 (1%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           +PN     ++Y+ +L  L  + +++    ++ ++  + +  D   Y  +   L +   ++
Sbjct: 83  KPNI----VTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESR 138

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
              S+F E       +G   C+ LL  L  DG +  A ++ + + H G+  +T+ +   I
Sbjct: 139 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 198

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             +C+   L     + ++++ R   +    +    +I+G CK + V +A  ++ E+    
Sbjct: 199 NGYCQVRDLRGAFCIFEQMKSRH--IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 256

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
             P    +  + + +   G + +   VL   ++ G+      +   +       +I EA 
Sbjct: 257 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 316

Query: 317 ELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            + + ++      +  V N++I + + S D   A +    M   G   ++ T + L K L
Sbjct: 317 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 376

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C+ ++ DE  E+   L       D+ SYN ++S  C  G   +A  ++QEM + G+ P +
Sbjct: 377 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 436

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y++L+ A      +   + L+ QM       +   Y I++  +           L   
Sbjct: 437 RTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKE 496

Query: 496 MLEKGVAPDAT 506
           M EKG+A D T
Sbjct: 497 MSEKGIAFDDT 507



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 160/357 (44%), Gaps = 21/357 (5%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMINGSVIAV 230
           L +F E   +GV        + +   C++ K+    QVL ML         ++  +VI  
Sbjct: 141 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML-----VHTGLVPTTVIYN 195

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I+G+C+ + +  AF + ++++ R  +PD I Y  +      +  V + E ++ +  K 
Sbjct: 196 TLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKS 255

Query: 291 GVAPRTNDYREFI--LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
           GV P    +   I   G   +   C    L ++   G   I  DV++   GSV     ++
Sbjct: 256 GVDPSVETFNTLIDAYGTAGQLEKC-FTVLSDMQQKG---IKSDVIS--FGSVVKAFCKN 309

Query: 349 -----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+   + MI K   P     +++     +   +++   + + +  +     + +Y
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N+++  LC S ++ EA  +I  ++ +GL PDV  YN+++ ACC +     A +L  +M  
Sbjct: 370 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 429

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
            G    L+TY+ L+S  +  G +     L+  ML K V P ++ Y  +++   +  N
Sbjct: 430 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 486



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%)

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  SYNV+++ L  SG+  +A  V  EM   G+ P+   YN++++   +   L    +L 
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           DQM   G   N+ TYN+L+S     G ++    L   M    + PD  TY+ L +GL + 
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
              +    +F +S+   VML     S  +  LC+ G    A ++L  L
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 182



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 21/157 (13%)

Query: 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
           PD   YN ++    R      A K++D+M   G   N  TYN +I    + G++E   RL
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQ---------AAFEVFNKSVNHDVML----- 538
              ML  G  P+  TY  LL GLC+   +          A+  +F     + ++      
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 539 ---ARSILSTFMISLCRRGHFLVA---TKLLRGLSSD 569
              +R++LS F  SL ++G  L A   + LL GL  D
Sbjct: 134 TGESRTMLSLFAESL-KKGVMLGAYTCSILLNGLCKD 169



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 63/142 (44%)

Query: 76  QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
           QQ       +S+ S++K+   + +I    ++L  +    +  ++ VY  II + I+  +T
Sbjct: 288 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 347

Query: 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195
           ++AF +  ++K +         N LL  L     ID A ++   + ++G+    + +   
Sbjct: 348 EQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTI 407

Query: 196 IWKFCENAKLGQVLSMLDEVRK 217
           I   C      + L +L E+ K
Sbjct: 408 ISACCNKGDTDKALELLQEMNK 429


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 196/442 (44%), Gaps = 40/442 (9%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+ +L   G +D+A ++FD+M  +G E +   FG+ +  +C      + L +L E+R+
Sbjct: 60  NVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRR 119

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
              S     V+   +I  FCK  + ++A K++DE+R     PD + +          G V
Sbjct: 120 LGFS--PNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKV 177

Query: 278 FEREVVLKKKR---KLGVA-PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            E   + +  +    LG+  P    Y   + G   E  + EA+ L E     K  + +++
Sbjct: 178 LEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFE-----KMKVSENL 232

Query: 334 LNA------LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
           +N       L+G V       A +    M++ G  P + + + +   LCK     +   +
Sbjct: 233 MNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARML 292

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
            ++++++    D  +Y  ++   C +G++ EA  V++EM R G  P+    N L+ +  +
Sbjct: 293 MRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWK 352

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA----- 502
           E  +  A++L  +M   G   +  T NI+I      G+++ A+ + + M   G A     
Sbjct: 353 EGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNL 412

Query: 503 ------------------PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
                             PD  +Y++++ GLC+   +  A + F + +  ++    +I  
Sbjct: 413 GNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYD 472

Query: 545 TFMISLCRRGHFLVATKLLRGL 566
            F+ S C+ G    A ++L+ +
Sbjct: 473 VFIHSFCKEGKISSAFRVLKDM 494



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 195/435 (44%), Gaps = 26/435 (5%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           ID VL   + N IT     Y  ++    +    ++A ++F ++K +   +  E  N  L 
Sbjct: 189 IDEVLGLPQPNIIT-----YNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLL 243

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G +  A  +  EM   G+E +   + + +   C+N  L     ++  +    + +
Sbjct: 244 GLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTS--SGV 301

Query: 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
           +  +V    ++HG+C   +V EA  VL E+    C P+     I+       G + E E 
Sbjct: 302 LPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEE 361

Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL----NALI 338
           +L+K  + G    T      I GL    ++ +A E    IV+G +T     L    N+ I
Sbjct: 362 LLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIE----IVNGMWTHGSAALGNLGNSYI 417

Query: 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
           G V   D R           K  +P L + S +   LCK  +  E  + +  +   +   
Sbjct: 418 GLVDDSDSR-----------KKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQP 466

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D   Y+V +   C  G++  A+ V+++M++KG +  +  YNSL+     ++ +     L 
Sbjct: 467 DSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLI 526

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D+M   G S ++  YN ++S   E G ++ A  +   ML+KG++P+ ++++ L++  C+ 
Sbjct: 527 DEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKA 586

Query: 519 TNLQAAFEVFNKSVN 533
            +  A  E+F  ++N
Sbjct: 587 CDFSAVDEIFEIALN 601



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 211/485 (43%), Gaps = 34/485 (7%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFD 178
           VY  +I S  +   T  A  + +E++   + + P++   N+ ++ L S G +  A ++F 
Sbjct: 128 VYNTLISSFCKEGKTDDAEKLVDEMRK--DGLSPDVVTFNARISALCSSGKVLEASRIFR 185

Query: 179 EMSHRGV----EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           +M    V    + + I + + +  FC+   L +  ++ ++++  EN M   S    L+  
Sbjct: 186 DMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLL-- 243

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294
           G  +  ++ EA  VL E+     +P+  +Y IV +     G +F+  ++++     GV P
Sbjct: 244 GLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLP 303

Query: 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFF 353
            T  Y   + G     ++ EA  +   ++    + ++   N L+ S+      S A    
Sbjct: 304 DTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELL 363

Query: 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS----------ANDY------- 396
             M EKG V    T + +   LC   K D+ +E+   +            N Y       
Sbjct: 364 QKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDS 423

Query: 397 ------FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
                   D+ SY+ ++S LC +GR+ EA     EM  K L PD + Y+  + + C+E  
Sbjct: 424 DSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGK 483

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A ++   M   GC+  L+TYN LI       +I     L   M E+GV+PD + Y +
Sbjct: 484 ISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNN 543

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
           +L  LC+   ++ A  V ++ +   +    S  S  + + C+   F    ++     +  
Sbjct: 544 VLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVC 603

Query: 571 GHSDS 575
           GH ++
Sbjct: 604 GHKEA 608



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 4/213 (1%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+  G  P   T + L   LC     D+  E++  +       +  S+ ++V   C +G 
Sbjct: 47  MVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGF 106

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
             +   ++ EM+R G  P+   YN+L+ + C+E     A+KL D+M   G S ++ T+N 
Sbjct: 107 TSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNA 166

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGV----APDATTYTSLLEGLCQETNLQAAFEVFNKS 531
            IS     G++  A R+F +M    V     P+  TY  +L G C+E  L+ A  +F K 
Sbjct: 167 RISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM 226

Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
              + ++ R   + +++ L R G  L A  +L+
Sbjct: 227 KVSENLMNRESYNIWLLGLVRIGKLLEAQLVLK 259



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/446 (21%), Positives = 177/446 (39%), Gaps = 62/446 (13%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           SY+ ++  L  +  +     +++ +  + +  D+  Y  ++          +A +V  E+
Sbjct: 272 SYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREM 331

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +        CN LL  L  +G I  A ++  +M+ +G    T+   + I   C N KL
Sbjct: 332 MRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKL 391

Query: 206 GQVLSMLDEVRKRENSMING---SVIAVL------------------IIHGFCKGKRVEE 244
            + + +++ +    ++ +     S I ++                  II G CK  RV E
Sbjct: 392 DKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGE 451

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A K   E+  +  +PD   Y +    F   G +     VLK   K G       Y   I+
Sbjct: 452 AKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIM 511

Query: 305 GLIVERRICEA----KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
           GL  + +I E      E+ E  VS   +I ++VL++L       D  S +   + M++KG
Sbjct: 512 GLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVL---DEMLQKG 568

Query: 361 RVPTLSTLSNLSKNLCKR---NKSDELVEVY----------------------KVLSAND 395
             P +S+ S L K  CK    +  DE+ E+                       +V+ A +
Sbjct: 569 ISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKE 628

Query: 396 YF-TDMES--------YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446
            F T ++         Y  ++  LC   +L +A G++ ++  KG   D + +  +++   
Sbjct: 629 LFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLG 688

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKT 472
           +      A +L ++M      G +K 
Sbjct: 689 KRGNKHEADELAEKMMEMASEGKVKN 714



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 41/291 (14%)

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
            F+ M EKG  P   +   L +  C+   + + +E+   +    +  +   YN ++S  C
Sbjct: 78  LFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFC 137

Query: 412 TSGRLREAYGVIQEMKRKGLDPD-VSF--------------------------------- 437
             G+  +A  ++ EM++ GL PD V+F                                 
Sbjct: 138 KEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQ 197

Query: 438 -----YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492
                YN ++   C+E +L  A+ L+++M  S    N ++YNI +     +G++  A  +
Sbjct: 198 PNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLV 257

Query: 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
              M++ G+ P+  +Y  +++GLC+   L  A  +     +  V+      +T +   C 
Sbjct: 258 LKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCH 317

Query: 553 RGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAIEHIKWIQE 601
            G    A  +LR +  D    +++   ILL SL     +  A E ++ + E
Sbjct: 318 TGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNE 368



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 32/312 (10%)

Query: 60  LLTHHSLALG--------FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVK 111
           + TH S ALG          + +  +       +SY +I+  L  + ++        ++ 
Sbjct: 401 MWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMM 460

Query: 112 VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171
              +  DS++Y   I S  +      AF V  +++    +   +  NSL+  L S   I 
Sbjct: 461 GKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIF 520

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
               + DEM  RGV      +   +   CE  ++    S+LDE+ ++  S  N S  ++L
Sbjct: 521 EIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGIS-PNISSFSIL 579

Query: 232 IIHGFCKG---KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
            I  FCK      V+E F    E+ +  C      Y +   E  + G     EVV  K+ 
Sbjct: 580 -IKAFCKACDFSAVDEIF----EIALNVCGHKEALYSLTFNELLVGG-----EVVKAKEL 629

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
                 R+ D   F+   +++  +C+ ++L +   SG       +L+ LI      DP S
Sbjct: 630 FETALDRSFDVGNFLYKDLID-HLCKDEKLDD--ASG-------ILHKLIDKGYWFDPAS 679

Query: 349 AIVFFNFMIEKG 360
            +   + + ++G
Sbjct: 680 FMPVIDGLGKRG 691


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 121/547 (22%), Positives = 233/547 (42%), Gaps = 48/547 (8%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           L L FF+W S+ Q +   +  +Y S+LK L+ SR  + ++ VL+ ++V +++        
Sbjct: 75  LGLKFFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSI 134

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEM-- 180
           +I +       +KA  ++  V        P++  CNSLL +L   G I+ A K++DEM  
Sbjct: 135 VIQAYSDSGLVEKALELYYFV-LKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLE 193

Query: 181 ----SHRGVE-FSTIGFGVFIWKFCENAKLGQVLSMLDE--------------------V 215
                 R V+ +ST    + +   C+  KL +   ++++                     
Sbjct: 194 IDGAGDRCVDNYSTC---IMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYC 250

Query: 216 RKRENSMINGSVIAV-------------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
           +K +  M NG  I +              II+GFCK    +   ++L E+  R    +  
Sbjct: 251 KKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQ 310

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + +     G + +    ++   + G  P    Y   I G   + ++ EA +L E  
Sbjct: 311 VYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQA 370

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +      +      LI +         A  +   M E+G  P L T   L   L    + 
Sbjct: 371 LGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEV 430

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  + + + +     F D   YN+++S LC   +L  A  ++ EM  + + PD   Y +L
Sbjct: 431 DVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATL 490

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++   R   L  A+KL++     G +  +  YN +I  + + G ++ A+   + M ++ +
Sbjct: 491 VDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHL 550

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           APD  TY+++++G  ++ +L  A ++F + V           ++ +   CR+G    + K
Sbjct: 551 APDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLK 610

Query: 562 LLRGLSS 568
           + R + +
Sbjct: 611 IFREMQA 617



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 160/388 (41%), Gaps = 43/388 (11%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           ++ N+++      G+I  A++  + M   G +   + +   I   C + K+ +   +L++
Sbjct: 310 QVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQ 369

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
              +   ++        +IH +CK    + A   L E+  R  KPD + Y  +     + 
Sbjct: 370 ALGK--GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVA 427

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G V     + +K  + GV P    Y   + GL  + ++  AK L   ++      D  V 
Sbjct: 428 GEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVY 487

Query: 335 NALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
             L+ G + + +   A   F   IEKG  P +                            
Sbjct: 488 ATLVDGFIRNGNLDEARKLFELTIEKGMNPGIV--------------------------- 520

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                    YN M+   C  G +++A   I  MK++ L PD   Y+++++   ++  L  
Sbjct: 521 --------GYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDG 572

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A+K++ +M    C  N+ TY  LI+ F   G++  +L++F  M   G+ P+  TY+ L+ 
Sbjct: 573 AQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIG 632

Query: 514 GLCQETNLQAAFEVF-----NKSVNHDV 536
             C+E  L  A   F     NK V +DV
Sbjct: 633 SFCKEAKLIDAASFFEEMLMNKCVPNDV 660



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 8/228 (3%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           + K LCK  K +E  ++ +         ++  YN ++   C  G +  A G+  E+K KG
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
             P V  Y +++   C++   +   +L  +M + G + N++ YN +I    + G I  A+
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 329

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
                M+E G  PD  TY +L+ G C++  +  A ++  +++   +M  +   +  + + 
Sbjct: 330 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 389

Query: 551 CRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAI 593
           C++G +  A+  L     RG   DL    ++  L+  L  A EV++A+
Sbjct: 390 CKQGGYDRASNWLIEMTERGHKPDL---VTYGALVHGLVVAGEVDVAL 434


>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Brachypodium distachyon]
          Length = 841

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 204/472 (43%), Gaps = 42/472 (8%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEIC--NSLLAVLASDGYIDNAL 174
           D+  Y  +I           AF + +E++   C+   P +   N L+ VL  DG + +A 
Sbjct: 244 DACSYNILIKGYSVFGQAGDAFQLLDEMRESGCQ---PTVVTYNILVNVLCHDGNMVDAR 300

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++FDEM   G+E +TI F V +  + +  ++ +  +   E++ R   + +     +L   
Sbjct: 301 RLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKAR-GLVPDCCTFNILSAG 359

Query: 235 GFCKGKRVEEAF--KVLDEL---RIRECKPDFIAYRI-----VAEEFKLMGSVFEREV-- 282
            +  GK V+ A   + L E+   RI     D +  R+     + + +KL+ S  E+ V  
Sbjct: 360 AYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDDAWKLVCSAIEQGVPV 419

Query: 283 -----------------------VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
                                  V     K+G+ P +  +   I+GL  + R+ +A+ L 
Sbjct: 420 SVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLL 479

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379
           E ++   + +       +     S +   A+  ++ M++ G  P     S     LC+ +
Sbjct: 480 EHMICKGYCVGTSFTIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLD 539

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             +E  + +  ++   +  +  +YN ++S  C  G + EA  + ++M++ GL PDV   N
Sbjct: 540 HVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSN 599

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            L++  C+E  L    K +  M+ SG + ++ TYN +I+ +    ++  A+   + ML  
Sbjct: 600 ILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLAD 659

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           G  PD  TY   +  LC    L  A ++ ++ V    M      +T M  +C
Sbjct: 660 GCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDGIC 711



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 169/407 (41%), Gaps = 7/407 (1%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +LL +L   G +  A K+F EM+ RG   S   F   I  FC    +   L +L  V  R
Sbjct: 180 ALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIGLGLLG-VMWR 238

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            N + +     +LI  G+    +  +AF++LDE+R   C+P  + Y I+       G++ 
Sbjct: 239 FNVIPDACSYNILI-KGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMV 297

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +   +  +  K+G+   T  +   + G     R+ EA      + +     D    N L 
Sbjct: 298 DARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILS 357

Query: 339 GSVSSIDPRSAIVFFNFMIEK--GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                      +      + +  G   +  ++  +   LC   + D+  ++         
Sbjct: 358 AGAYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDDAWKLVCSAIEQGV 417

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              +  +N +V+     G   +A  V   M + GL P    +N L+   C +  L  A+ 
Sbjct: 418 PVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQL 477

Query: 457 LWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           L + M   G C G   ++ I +  +   G +EGAL+ + +M++ GV PD   +++ + GL
Sbjct: 478 LLEHMICKGYCVGT--SFTIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGL 535

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           C+  ++  A++ F +      +      ++ + + CR G+   A KL
Sbjct: 536 CRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKL 582



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 12/240 (5%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G  P+LS ++ L + L +  +     +V+  ++A      +  +N M+   C  G +   
Sbjct: 170 GNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIG 229

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
            G++  M R  + PD   YN L++          A +L D+M  SGC   + TYNIL++ 
Sbjct: 230 LGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNV 289

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G +  A RLF  M++ G+  +  T+  L++G  +   +  A+    +      M A
Sbjct: 290 LCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACRE------MKA 343

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI-LLKSLADAREVEMAIEHIKW 598
           R ++       C   + L A     G +  L H    +  +  S   A  V+M +  + W
Sbjct: 344 RGLVPD-----CCTFNILSAGAYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCW 398



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 137/346 (39%), Gaps = 24/346 (6%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           L +H F       EA  VL  +R     P   A   +       G V     V  +    
Sbjct: 145 LALHAFLAAGMASEALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTAR 204

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV--LNALIGSVSSI-DPR 347
           G  P    +   ILG     R      LG + V  +F +  D    N LI   S      
Sbjct: 205 GPRPSLAIFNAMILGFC--HRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAG 262

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCK-------RNKSDELVEVYKVLSANDYFTDM 400
            A    + M E G  PT+ T + L   LC        R   DE+V+V   + AN      
Sbjct: 263 DAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKV--GIEANTI---- 316

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR---EDLLRPAKKL 457
            ++NV+V     +GR+ EAY   +EMK +GL PD   +N L     +      L   ++ 
Sbjct: 317 -TFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILSAGAYKFGKAVQLAHGQQE 375

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
             +MF S  S +  + ++++ +    G ++ A +L  + +E+GV      + +L+    +
Sbjct: 376 LHEMFGSRISAD--SVDMVVCRLCWDGRLDDAWKLVCSAIEQGVPVSVAGFNALVAAYSK 433

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           E   + A EV++      ++ +    +  ++ LC +G    A  LL
Sbjct: 434 EGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLL 479


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 3/372 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+      G +D+A++MF EM  +G E     +G  +    +  ++ +  S  D + +
Sbjct: 104 NVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLE 163

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R   +        L++  F K  +++ A  +  E++ R  +P  + Y I+ +     G V
Sbjct: 164 R--GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +  K    G +P +  Y   + GL    R+ EA ++   +V     +D    N+L
Sbjct: 222 GAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSL 281

Query: 338 IGSVSSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + +++       +      M  KG  P   + + +   L K NK D   EV+  +  +  
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+ SYN+++      G   +A  +++EM   G  P+   YNSL+     +  +  A  
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFA 401

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           + ++M  +GC  ++ TYN L+    + GE + A RLF  M +KGV PD  +Y   ++GL 
Sbjct: 402 VLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461

Query: 517 QETNLQAAFEVF 528
            +  L  A  +F
Sbjct: 462 FDDRLDEALVLF 473



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/485 (22%), Positives = 202/485 (41%), Gaps = 15/485 (3%)

Query: 47  LSPSLVARVINPYLLTHHSL-ALGFFNWASQQPNFTHSPLSYHSILKSLSL---SRQINA 102
           L P+ + ++I  Y   + S  A   FN   Q  +F  SP + H+  K + +   S +   
Sbjct: 28  LRPNTLVKLITAYGRGNKSGDAFDLFN---QAESFACSP-TVHAFTKLIDILVNSGEFER 83

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
            + V K++      LD   Y  +I    +      A  +F E+K    +        L+ 
Sbjct: 84  AELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVN 143

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L   G +  A   FD M  RG+  +   + + +  F +  +L   L +  E+++R    
Sbjct: 144 ALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRG--- 200

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
              SV+   +++   C   RV  A K+  ++    C PD   Y  +       G V E  
Sbjct: 201 FQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAH 260

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV 341
            V ++    GVA    +Y   +  L     +    +L + +    F  D    N ++ ++
Sbjct: 261 KVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDAL 320

Query: 342 SSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
              + P +A   F  M+E G  P L + + L  +  +   + +  ++ + +    +  + 
Sbjct: 321 GKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPET 380

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
           ++YN ++ +L T G++ EA+ V++EM+  G  PDV  YN LM+   +    + A +L+ Q
Sbjct: 381 KTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQ 440

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL--CQE 518
           M   G   +  +Y + I   +    ++ AL LF +M   G   D   Y  L+       +
Sbjct: 441 MKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGD 500

Query: 519 TNLQA 523
           T L+A
Sbjct: 501 TELEA 505



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 171/411 (41%), Gaps = 3/411 (0%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +Y+ +++    S Q+++   + +++K+     D   Y F++ +L +    Q+A S F+ 
Sbjct: 101 FAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDA 160

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +            N L+      G +D AL +F EM  RG + S + + + +   C   +
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G    +  ++    +     S     +++G  K  RVEEA KV  E+  R    D + Y
Sbjct: 221 VGAARKLFHKMTG--DGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
             +       G++     ++K+  + G  P    +   +  L    +   A+E+   +V 
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338

Query: 325 GKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                D    N LI S +   D   A      M+E G +P   T ++L   L    + DE
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDE 398

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              V + +       D+ +YN ++  L   G  + A  + Q+MK KG++PD   Y   ++
Sbjct: 399 AFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRID 458

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
               +D L  A  L+  M A GC  +   Y ILI      G+ E   +L H
Sbjct: 459 GLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKH 509



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/450 (21%), Positives = 191/450 (42%), Gaps = 21/450 (4%)

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK-FNCEDIGPEI-- 156
           ++ ++++LK++      L  +    +I +  +G  +  AF +FN+ + F C    P +  
Sbjct: 11  LDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACS---PTVHA 67

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
              L+ +L + G  + A  ++ ++  +G +     + V I  F  + +L   + M  E++
Sbjct: 68  FTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMK 127

Query: 217 KRENSMINGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                 I GS         +++   K  RV+EA    D +  R   P+   Y ++ + F+
Sbjct: 128 ------IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
            +G +     +  + ++ G  P    Y   +  L    R+  A++L   +     + D  
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 333 VLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             + L+  +  S     A   F  M+++G    L   ++L   L K    D + ++ K +
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           S   +  D  S+N ++  L  + +   A  V   M   G  PD+  YN L+++  R    
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A+++ ++M  +G     KTYN LI   +  G+++ A  +   M   G  PD  TY  L
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRL 421

Query: 512 LEGLCQETNLQAAFEVF----NKSVNHDVM 537
           ++ L +    Q A  +F    +K V  D +
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTL 451



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 8/229 (3%)

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           PT+   + L   L    + +    VYK L       D  +YNV++ +   SG+L  A  +
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
            +EMK KG +PD   Y  L+ A  +   ++ A+  +D M   G + N+ TYN+L+  F +
Sbjct: 123 FREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
           VG+++ AL LF  M  +G  P   TY  LL+ LC    + AA ++F+K            
Sbjct: 183 VGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT 242

Query: 543 LSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADA 586
            ST +  L + G    A K+      RG++ DL + +S   LL +LA A
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNS---LLATLAKA 288



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 181/470 (38%), Gaps = 54/470 (11%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           +L VLAS G +D    +  EM   G           I  +    K G    + ++     
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAE--- 57

Query: 220 NSMINGSVIAVLIIHGFCK-------GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
                 S      +H F K           E A  V  +L  + C+ D  AY ++   F 
Sbjct: 58  ------SFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFG 111

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G +     + ++ +  G  P    Y   +  L    R+ EA+   + ++    T +  
Sbjct: 112 RSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIP 171

Query: 333 VLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
             N L+ +   +     A+  F  M  +G  P++ T + L   LC   +     +++  +
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGV----------------------------- 422
           + +    D  +Y+ +V+ L  SGR+ EA+ V                             
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNM 291

Query: 423 ------IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
                 ++EM RKG  PD   +N++M+A  + +    A++++ +M  SGC  +L +YNIL
Sbjct: 292 DRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNIL 351

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
           I  ++  G+   A ++   M+E G  P+  TY SL+  L  +  +  AF V  +      
Sbjct: 352 IDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC 411

Query: 537 MLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLA 584
                  +  M  L +RG    A +L + +       D  S+ + +  LA
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
           V+S +   A + +  +++KG        + L +   +  + D  +E+++ +       D 
Sbjct: 76  VNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDE 135

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +Y  +V+ L  +GR++EA      M  +GL P++  YN LM+A  +   L  A  L+ +
Sbjct: 136 YTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAE 195

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   ++ TYNIL+      G +  A +LFH M   G +PD+ TY++L+ GL +   
Sbjct: 196 MKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGR 255

Query: 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVI 578
           ++ A +VF + V+  V +     ++ + +L + G+     KL++ +S    H D  S   
Sbjct: 256 VEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315

Query: 579 LLKSLADAREVEMAIEHIKWIQESS 603
           ++ +L  A + + A E    + ES 
Sbjct: 316 IMDALGKANKPDAAREVFARMVESG 340


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 164/365 (44%), Gaps = 3/365 (0%)

Query: 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233
           +++ D    +      I + + I   C  + +GQ + +LDE+  R        V   +++
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSR--GCKPDVVTYNVLV 58

Query: 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA 293
           +G CK  R++EA K L+ +     +P+ I + I+       G   + E +L +  + G +
Sbjct: 59  NGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 294 PRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVF 352
           P    +   I  L  +  +  A ++ E + +   T +    N L+ G         AI +
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412
              M+ +G  P + T + +   LCK  K D  VE+   LS+      + +YN ++  L  
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472
            G+  +A  ++ EM+ KGL PDV  Y+SL+    RE  +  A K +  +   G   N  T
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFT 298

Query: 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
           YN ++    +  + + A+     M+ KG  P   +YT L+EG+  E   + A E+ N+  
Sbjct: 299 YNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELC 358

Query: 533 NHDVM 537
           +  V+
Sbjct: 359 SRGVV 363



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 34/337 (10%)

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
           R+ E       +   ++I   C    V +A K+LDE+  R CKPD + Y ++       G
Sbjct: 6   RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEG 65

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            + E    L      G  P    +       I+ R +C          +G++   + +L 
Sbjct: 66  RLDEAIKFLNSMPSYGSQPNVITHN------IILRSMCS---------TGRWMDAEKLLT 110

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                               M+ KG  P++ T + L   LC++      +++ + +  + 
Sbjct: 111 E-------------------MVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHG 151

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  SYN ++   C   ++  A   ++ M  +G  PD+  YN+++ A C++  +  A 
Sbjct: 152 CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAV 211

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           +L +Q+ + GCS  L TYN +I   S+VG+ + A+ L H M  KG+ PD  TY+SL+ GL
Sbjct: 212 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGL 271

Query: 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
            +E  ++ A + F+      V       ++ M  LC+
Sbjct: 272 SREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCK 308



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 11/255 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L   G +  A+ + ++M   G   +++ +   +  FC+  K+ + +  L+ +  
Sbjct: 125 NILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVS 184

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R        V    ++   CK  +V+ A ++L++L  + C P  I Y  V +    +G  
Sbjct: 185 R--GCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 242

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-----GEVIVSGKFTIDDD 332
            +   +L + R  G+ P    Y   I GL  E ++ EA +      G  +    FT +  
Sbjct: 243 DQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYN-- 300

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             + + G   +     AI F  +MI KG  PT  + + L + +     + E +E+   L 
Sbjct: 301 --SIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELC 358

Query: 393 ANDYFTDMESYNVMV 407
           +        +  V+V
Sbjct: 359 SRGVVKKSSAEQVVV 373



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 14/234 (5%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP--LSYHSILKSLSLSRQI 100
           +R   SPS+V   I    L    L     +   + P    +P  LSY+ +L      +++
Sbjct: 113 VRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKM 172

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--N 158
           +     L+ +       D   Y  ++ +L +      A  + N+   + +   P +   N
Sbjct: 173 DRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQ--LSSKGCSPVLITYN 230

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK- 217
           +++  L+  G  D A+++  EM  +G++   I +   I       K+ + +    +V   
Sbjct: 231 TVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGF 290

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
             + N+    S     I+ G CK ++ + A   L  +  + CKP  ++Y I+ E
Sbjct: 291 GVKPNAFTYNS-----IMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIE 339


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 185/439 (42%), Gaps = 58/439 (13%)

Query: 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV--LIIHGFCKGKRVEEA 245
           S   +G  +   C   +  +   +++E +  +  M  GS++ +  L++ GF +   V+EA
Sbjct: 13  SEFTYGTLVHGHCLAGEFDEAKRLVEEFK--DTGMSPGSLVVLHNLMLKGFSEAGFVDEA 70

Query: 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305
              L  +   +CKP+ ++Y  + +     G + E    L+   K GVAP    Y     G
Sbjct: 71  KSHLHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATG 127

Query: 306 LIVERRICEAKELGEVIVSGKFTIDDDVLNALI--------------------------- 338
           L     + EA EL  V+ S  F +     N ++                           
Sbjct: 128 LGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPN 187

Query: 339 ---------GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                        +  P  A+   + M+E G  PT+ T + L +  C  ++ D   ++ +
Sbjct: 188 ILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLE 247

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
            ++ +    +  +Y++MV      GR+ EA   ++++   G  P++   N+ +   C+  
Sbjct: 248 TMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTG 307

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
            +  A +    M   GC  N  TYN L+  F ++G ++ A R+   M+ +G  PD+TTY+
Sbjct: 308 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYS 367

Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
            L++GLC    ++ AF V  + V   V  AR   +TF+             KL+  L  +
Sbjct: 368 VLIQGLCSAGQIEHAFMVMLQ-VTRAVESARPDPATFV-------------KLIEKL-CE 412

Query: 570 LGHSDSHVILLKSLADARE 588
           LG  D   ++L+ + D  E
Sbjct: 413 LGEMDRAALVLERMGDEHE 431



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/454 (19%), Positives = 172/454 (37%), Gaps = 109/454 (24%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F HS  +Y +++    L+ + +    ++++ K   ++  S V   ++ +L+    ++  F
Sbjct: 10  FVHSEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLV---VLHNLMLKGFSEAGF 66

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
               +   +  D  P     N+L+  L S G I  A +    M+ RGV  + + +     
Sbjct: 67  VDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMAT 126

Query: 198 KFCENAKLGQVLSML----------------------------DEVRKRENSM----ING 225
              +   L +   ++                            DE  K   +M    I  
Sbjct: 127 GLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEP 186

Query: 226 SVIAV-LIIHGFCKGKRVEEAF-----------------------------------KVL 249
           +++ + LI+H FCK  R EEA                                    K+L
Sbjct: 187 NILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLL 246

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           + +   +CKP+F+ Y I+ ++F  MG + E    L++    G AP       ++ GL   
Sbjct: 247 ETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLC-- 304

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
                  + GE+ ++ +                         F   M E+G     +T +
Sbjct: 305 -------KTGEMDLASR-------------------------FLTVMAEEGCRANTATYN 332

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR- 428
           +L +  CK  + DE   V + + A     D  +Y+V++  LC++G++  A+ V+ ++ R 
Sbjct: 333 SLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRA 392

Query: 429 -KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
            +   PD + +  L+E  C    +  A  + ++M
Sbjct: 393 VESARPDPATFVKLIEKLCELGEMDRAALVLERM 426


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 221/490 (45%), Gaps = 43/490 (8%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
           + L   L++  +NP       L L ++ W  +  + + S      +L SL+ +++ + I 
Sbjct: 68  NELFRQLISSELNP------DLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIR 121

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164
           S L                      ++  +  +  S+F+ +   C+++     NS++A +
Sbjct: 122 SFLD-------------------GFVRNGSDHQVHSIFHAISM-CDNV---CVNSIIADM 158

Query: 165 ASDGYIDNA-----LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
               Y +N+      + F    + G + S +     +    +  +   V  +  E+ +R+
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRK 218

Query: 220 NSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF-KLMGS- 276
              I  +V    ++I+  CK  ++ +A  V++++++    P+ ++Y  + + + KL G+ 
Sbjct: 219 ---IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNG 275

Query: 277 -VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +++ + VLK+  +  V+P    +   I G   +  +  + ++ + ++      +    N
Sbjct: 276 KMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYN 335

Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI G  +      AI   + M+  G  P L T  +L    CK     E ++++  +   
Sbjct: 336 SLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQ 395

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                   YN+++   C  G++ + + + +EM+R+G+ PDV  YN L+   CR   +  A
Sbjct: 396 GTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           KKL+DQ+   G   +L T++IL+  +   GE   A  L   M + G+ P   TY  +++G
Sbjct: 456 KKLFDQLTNKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKG 514

Query: 515 LCQETNLQAA 524
            C+E NL+AA
Sbjct: 515 YCKEGNLKAA 524



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 174/387 (44%), Gaps = 26/387 (6%)

Query: 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD---- 250
           F+  F  N    QV S+   +   +N  +N S+IA +++  +    R E  F+       
Sbjct: 123 FLDGFVRNGSDHQVHSIFHAISMCDNVCVN-SIIADMLVLAYANNSRFELGFEAFKRSGY 181

Query: 251 ---ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI 307
              +L    CKP  +A  ++ +          +E++ +K     + P    +   I  L 
Sbjct: 182 YGYKLSAMSCKPLMVA--LLKQNRSADVEYLYKEMIRRK-----IQPNVFTFNVVINALC 234

Query: 308 VERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS----AIVFFNFMIEKGRVP 363
              ++ +A+++ E +    ++ +    N LI     +        A      M+E    P
Sbjct: 235 KTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSP 294

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            L+T + L     K +     ++V+K +   D   ++ +YN +++ LC  G++ EA G+ 
Sbjct: 295 NLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMR 354

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
            +M   G+ P++  Y+SL+   C+  +++ A  ++D +   G     + YN+LI  + ++
Sbjct: 355 DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKL 414

Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
           G+I+    L   M  +G+ PD  TY  L+ GLC+  N++AA ++F++  N  +      L
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL----PDL 470

Query: 544 STFMI---SLCRRGHFLVATKLLRGLS 567
            TF I     C RG    A  LL+ +S
Sbjct: 471 VTFHILMEGYCSRGESRKAAMLLKEMS 497



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 165/358 (46%), Gaps = 12/358 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE---NAKLGQVLSMLDE 214
           N ++  L   G ++ A  + ++M   G   + + +   I  +C+   N K+ +  ++L E
Sbjct: 227 NVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKE 286

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           + + E S  N +   +LI  GF K   +  + KV  E+  ++  P+ I Y  +       
Sbjct: 287 MVENEVS-PNLTTFNILI-DGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNG 344

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
           G + E   +  K    GV P    Y   I G      + EA ++ + +          + 
Sbjct: 345 GKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMY 404

Query: 335 NALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           N LI +   +  ID   A+     M  +G VP + T + L   LC+    +   +++  L
Sbjct: 405 NMLIDAYCKLGKIDDGFALK--EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
           + N    D+ ++++++   C+ G  R+A  +++EM + GL P    YN +M+  C+E  L
Sbjct: 463 T-NKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNL 521

Query: 452 RPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
           + A  +  QM        N+ +YN+L+  +S+ G++E A  L + MLEKG+ P+  TY
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 181/428 (42%), Gaps = 62/428 (14%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNT 135
           QPN      +++ ++ +L  + ++N    V++ +KV   + +   Y  +I    + G N 
Sbjct: 220 QPNV----FTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNG 275

Query: 136 Q--KAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +  KA +V  E+  N  ++ P +   N L+     D  +  +LK+F EM  + V  + I 
Sbjct: 276 KMYKADAVLKEMVEN--EVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVIT 333

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAF 246
           +   I   C   K+ + + M D+       M++  V   LI     I+GFCK   ++EA 
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDK-------MVSAGVQPNLITYHSLINGFCKNGMMKEAL 386

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
            + D ++ +  +P    Y ++ + +  +G + +   + ++  + G+ P    Y   I GL
Sbjct: 387 DMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL 446

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366
                I  AK+L                                  F+ +  KG +P L 
Sbjct: 447 CRNGNIEAAKKL----------------------------------FDQLTNKG-LPDLV 471

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T   L +  C R +S +   + K +S         +YN+M+   C  G L+ A  +  +M
Sbjct: 472 TFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQM 531

Query: 427 -KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG- 484
            K + L  +V+ YN L++   ++  L  A  L ++M   G   N  TY I+  +  + G 
Sbjct: 532 EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGF 591

Query: 485 --EIEGAL 490
             +IEG L
Sbjct: 592 VPDIEGHL 599


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 160/375 (42%), Gaps = 44/375 (11%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG---QVLSMLDEV 215
           +L+  L   G +   L   D++  +  + + + +G  +   C+  +     ++L M+++ 
Sbjct: 85  TLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDR 144

Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R N ++  +     II G CK K V EA+ +  E+  RE  P+ I Y  +   F L G
Sbjct: 145 STRPNVVMYSA-----IIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAG 199

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     +L +     + P    +   I  L  E +   AK++                 
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQI----------------- 240

Query: 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
                            F+ M++ G  P + + + +   LCK  + DE + + + +   +
Sbjct: 241 -----------------FHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN 283

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  +YN ++  LC SGR+  A  ++ EM  +G   DV  Y SL++A C+   L  A 
Sbjct: 284 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKAT 343

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+ +M   G    + TY  LI    + G ++ A  LF ++L KG   D  TYT ++ GL
Sbjct: 344 ALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 403

Query: 516 CQETNLQAAFEVFNK 530
           C+E     A  + +K
Sbjct: 404 CKEGMFDEALAIKSK 418



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 153/352 (43%), Gaps = 38/352 (10%)

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           ++ ++  + + +   I+   F  +G +     +L K  KLG  P T  +   + GL ++ 
Sbjct: 35  QMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKG 94

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            + +     + +V+  F  +      L+ G   + + R AI     + ++   P +   S
Sbjct: 95  EVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYS 154

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            +   LCK    +E  ++Y  + A + F ++ +YN ++   C +G+L  A+ ++ EM  K
Sbjct: 155 AIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILK 214

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
            ++PDV  ++ L++A C+E   + AK+++  M   G + N+ +YNI+I+   +   ++ A
Sbjct: 215 NINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 272

Query: 490 LRLFHNMLEKGVAPDATTY-----------------------------------TSLLEG 514
           + L   ML K + PD  TY                                   TSLL+ 
Sbjct: 273 MNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 332

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           LC+  NL  A  +F K     +       +  +  LC+ G    A +L + L
Sbjct: 333 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 384



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 169/395 (42%), Gaps = 15/395 (3%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           +  + +++ +++K L L  ++  +     +V       +   Y  ++  L +   T+ A 
Sbjct: 76  YXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAI 135

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            +   ++         + ++++  L  D  ++ A  ++ EM  R +  + I +   I  F
Sbjct: 136 KLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAF 195

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCK-GKRVEEAFKVLDELRIREC 257
           C   +L    S+L E+  +    IN  V    ++I   CK GK  ++ F  + ++ +   
Sbjct: 196 CLAGQLMGAFSLLHEMILKN---INPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVN-- 250

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
            P+  +Y I+         V E   +L++     + P T  Y   I GL    RI  A  
Sbjct: 251 -PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 309

Query: 318 L-GEVIVSGK---FTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           L  E+   G+         +L+AL  +  ++D  +A+  F  M E+G  PT+ T + L  
Sbjct: 310 LMNEMHHRGQPADVVTYTSLLDALCKN-QNLDKATAL--FMKMKERGIQPTMYTYTALID 366

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            LCK  +     E+++ L       D+ +Y VM+S LC  G   EA  +  +M+  G  P
Sbjct: 367 GLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIP 426

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
           +   +  ++ +   +D    A+KL  +M A G  G
Sbjct: 427 NAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLG 461


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 186/432 (43%), Gaps = 44/432 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L   G ++ AL+  ++M + GVE   + + +    F       ++L ++    K
Sbjct: 309 NILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF-------RILGLISGAWK 361

Query: 218 RENSMI-NGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               M+ NG     V   ++I G C+   +EE+FK+ +++  +  K   + Y ++     
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-------RRICEAKELGEVIVSG 325
             G + E  ++L +   +G+ P    Y    +   +E       +RI     +   I+SG
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISG 481

Query: 326 KF---TIDDDVLNALIGSVSSIDPRSAIVFFNFMI--------------------EKGRV 362
            F    I +  +     SV+  D    I+ +N MI                    EKG  
Sbjct: 482 LFEKGAISEAQM--YFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 539

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           PT+ T ++L    CK+ K  E V++   +  +       +Y  +++  C  G +   + +
Sbjct: 540 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDM 599

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
           + EM+ K + P    Y  +++  C+E  L  + +L   M+A G   +  TYN +I  F +
Sbjct: 600 LHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 659

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
             +++ A +L + ML+  + P   TY  L+ GLC   NL+ A  +     +  + L +  
Sbjct: 660 AHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVA 719

Query: 543 LSTFMISLCRRG 554
            +T + + C +G
Sbjct: 720 YTTIIKAHCAKG 731



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 100/474 (21%), Positives = 196/474 (41%), Gaps = 17/474 (3%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ +     +   I+    V++++ +N +  D   Y  +I    Q  N +++F +  +
Sbjct: 341 VTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEK 400

Query: 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
           +      +       LL+ L   G ID A+ +  EM   G++   + +            
Sbjct: 401 MLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTY--------SRGA 452

Query: 205 LGQVLSMLDEV---RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           + + + + +E+   R   NS +  ++I+ L    F KG  + EA    D +   +   + 
Sbjct: 453 VEEAIELYEEMCSKRIYPNSFVCSAIISGL----FEKGA-ISEAQMYFDSVTKSDVAEEI 507

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y I+ + +  +G++ E     K+  + G++P    +   I G   + ++ EA +L + 
Sbjct: 508 ILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDT 567

Query: 322 I-VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           I V G           + G     D  S     + M  K   PT  T + + K LCK  +
Sbjct: 568 IKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGR 627

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
             E V++ K + A   F D  +YN ++   C +  L++A+ +  +M +  L P    YN 
Sbjct: 628 LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNV 687

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+   C    L+ A +L   +           Y  +I      G+++ AL  FH M+E+G
Sbjct: 688 LINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERG 747

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
                  Y++++  LC+   +  A   F   + H +   + I    + +  R G
Sbjct: 748 FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSG 801



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 28/352 (7%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           ++I G C+  R+++A   L E    E  P  +++  +   F  MGSV   +       K 
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-A 349
           G+ P    Y   + GL V   + EA E    + +     D    N L      +   S A
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M+  G  P L T + L    C+    +E  ++ + + +      + +Y V++S 
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYN--------SLMEACCREDL----------- 450
           LC SGR+ EA  ++ EM+  GL PD+  Y+         L E  C + +           
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAII 479

Query: 451 --------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
                   +  A+  +D +  S  +  +  YNI+I  ++++G I  A+R +  ++EKG++
Sbjct: 480 SGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 539

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           P   T+ SL+ G C++  L  A ++ +    H ++      +T M   C  G
Sbjct: 540 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 591



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   LC++++  + V   +     ++   + S+N ++S  C  G +  A      M + G
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYG 300

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L PDV  YN L+   C    +  A +  + M   G   ++ TYNIL + F  +G I GA 
Sbjct: 301 LLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAW 360

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
           ++   ML  G+ PD  TYT L+ G CQ  N++ +F++  K ++  + L+    +  + SL
Sbjct: 361 KVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSL 420

Query: 551 CRRGHFLVATKLLR-----GLSSDL 570
           C+ G    A  LL      GL  DL
Sbjct: 421 CKSGRIDEAVILLHEMEVIGLKPDL 445



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/488 (19%), Positives = 204/488 (41%), Gaps = 63/488 (12%)

Query: 56  INPYLLTHHSLALGFFNWASQQPNFTH-----------SPLSYHSILKSLSLSRQINAID 104
           +NP L+T+  L  G     + + +F             S ++Y  +L SL  S +I+   
Sbjct: 371 LNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAV 430

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPE--ICNSLL 161
            +L +++V  +  D   Y        +G   ++A  ++ E+   C + I P   +C++++
Sbjct: 431 ILLHEMEVIGLKPDLLTYS-------RGA-VEEAIELYEEM---CSKRIYPNSFVCSAII 479

Query: 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221
           + L   G I  A   FD ++   V    I + + I  +   AKLG +   +   ++    
Sbjct: 480 SGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY---AKLGNIGEAVRSYKQIIEK 536

Query: 222 MINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            I+ +++    +I+GFCK  ++ EA K+LD +++    P  + Y  +   +   G +   
Sbjct: 537 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 596

Query: 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
             +L +     + P    Y   + GL  E R+ E+ +L                      
Sbjct: 597 FDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQL---------------------- 634

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
                         +M  +G  P   T + + ++ CK +   +  +++  +  +      
Sbjct: 635 ------------LKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP 682

Query: 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
            +YNV+++ LC  G L++A  ++  ++ + +      Y ++++A C +  ++ A   + Q
Sbjct: 683 VTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQ 742

Query: 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520
           M   G   +++ Y+ +I++  +   I  A   F  ML  G+ PD      +L    +  +
Sbjct: 743 MVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGD 802

Query: 521 LQAAFEVF 528
             + FE+F
Sbjct: 803 PNSVFEIF 810



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 151/364 (41%), Gaps = 54/364 (14%)

Query: 114 KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID 171
           +I  +S V   II  L +     +A   F+ V  +  D+  EI   N ++   A  G I 
Sbjct: 467 RIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKS--DVAEEIILYNIMIDGYAKLGNIG 524

Query: 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231
            A++ + ++  +G+  + + F   I+ FC+  KL + + +LD ++   + ++  SV    
Sbjct: 525 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV--HGLVPTSVTYTT 582

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291
           +++G+C+   +   F +L E+  +  KP  I Y +V +     G + E   +LK     G
Sbjct: 583 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARG 642

Query: 292 VAPRTNDYREFILGLIVERRICEAKELGE---------------------VIVSGK---- 326
           + P    Y   I      +  C+A +L +                     V+++G     
Sbjct: 643 LFPDQITYNTVI------QSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYG 696

Query: 327 ---------FTIDDDVLNALIGSVSSI--------DPRSAIVFFNFMIEKGRVPTLSTLS 369
                     T+ D  +     + ++I        D ++A+VFF+ M+E+G   ++   S
Sbjct: 697 NLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYS 756

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            +   LCKRN   +    + ++  +    D +   VM++    SG     + +   M + 
Sbjct: 757 AVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKC 816

Query: 430 GLDP 433
           GL P
Sbjct: 817 GLLP 820



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 41/215 (19%)

Query: 397 FTDMESYNVMVSFL-CTSGR---LREAYGVIQEMKRKGLDPDVSFYNSLM---------- 442
           F D +  NV+   L C   R   + +A  V+ +MK   L   ++ YNSL+          
Sbjct: 161 FRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMW 220

Query: 443 ----------------------EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
                                 +  CR+  L+ A     +        ++ ++N L+S F
Sbjct: 221 DVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGF 280

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV---M 537
            ++G ++ A   F  M++ G+ PD  +Y  LL GLC   +++ A E  N   NH V   +
Sbjct: 281 CKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDI 340

Query: 538 LARSILSTF--MISLCRRGHFLVATKLLRGLSSDL 570
           +  +IL+    ++ L      +V   LL GL+ DL
Sbjct: 341 VTYNILANGFRILGLISGAWKVVQRMLLNGLNPDL 375


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/487 (21%), Positives = 212/487 (43%), Gaps = 16/487 (3%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI- 100
           LR  +   +++ V+N   L H +  LGF   A   +    ++ +++ ++++ L    ++ 
Sbjct: 101 LRIPVHEFILSIVVNSCCLMHRT-DLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVK 159

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           +A+    K V+ N    +  +Y  ++  L +  +TQKAF +   ++             +
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIV 219

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     DG +D A  + +EM  + +      +   I   C+       LS  + VR    
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCK-------LSQWENVRTLFL 272

Query: 221 SMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            MI+ ++   +     +I G CK  +VE+A +++  +  +   PD I Y ++ + + L G
Sbjct: 273 EMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRG 332

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            V     +        + P    Y   I G   +++I EA ++   I            N
Sbjct: 333 QVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCN 392

Query: 336 ALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+  +  +   +SA  FF+ M+  G +P L T   L     K    +E +  +  L   
Sbjct: 393 VLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERR 452

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
              T+++ Y  ++  LC +G+L +A+   +++   GL PDV  Y +++   C+E LL  A
Sbjct: 453 REDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           K +  +M  +GC  + +TYN+++  F    ++         +  K  + +A T   L++ 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 515 LCQETNL 521
           + ++ ++
Sbjct: 573 IAEDPSI 579



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/503 (19%), Positives = 207/503 (41%), Gaps = 67/503 (13%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV- 141
           S  S+  +LK++   +  +++ S+ +++   +I +   +   ++ S      T   FSV 
Sbjct: 71  SVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVL 130

Query: 142 ---------FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIG 191
                    +NEV F           +L+  L ++  + +A+ +F ++    + E + + 
Sbjct: 131 AIHFKKGIPYNEVTFT----------TLIRGLFAENKVKDAVHLFKKLVRENICEPNEVM 180

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKREN-SMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250
           +G  +   C   K G      D +R  E  S    +    ++I  FCK   ++ A  +L+
Sbjct: 181 YGTVMNGLC---KKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLN 237

Query: 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           E++ +   PD   Y  + +    +        +  +   L + P    +   I GL  E 
Sbjct: 238 EMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEG 297

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           ++ +A+E+                                    +MIEKG  P + T + 
Sbjct: 298 KVEDAEEI----------------------------------MRYMIEKGVDPDVITYNM 323

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           +      R + D   E++  +       D+ SYN++++      ++ EA  V +E+ +KG
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           L P +   N L+         + A+  +D+M ++G   +L T+  L+  + + G +E A+
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAM 443

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK----SVNHDVMLARSILSTF 546
             FH +  +    +   YT++++GLC+   L  A   F K     ++ DV+   +++S +
Sbjct: 444 SHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGY 503

Query: 547 MISLCRRGHFLVATKLLRGLSSD 569
               C+ G    A  +LR +  +
Sbjct: 504 ----CQEGLLDEAKDMLRKMEDN 522


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 219/482 (45%), Gaps = 46/482 (9%)

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA-SDGY-----IDNALK 175
           Y  +I + ++  N ++A  V +E+      +G  I  S++A  +  +GY     +  AL 
Sbjct: 313 YTSVIVAFVKEGNMEEAVRVMDEM------VGFGIPMSVIAATSLVNGYCKGNELGKALD 366

Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM---LDEVRKRENS-----MINGSV 227
           +F+ M   G+    + F V +  FC+N ++ + +     +  VR   +S     MI G +
Sbjct: 367 LFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCL 426

Query: 228 IA---------------VLIIHGF---------CKGKRVEEAFKVLDELRIRECKPDFIA 263
            A                 I HGF         CK  +V+ A   L  +  +  +P+ + 
Sbjct: 427 KAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVF 486

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y  +      M ++     +  +  + G+ P    Y   I G    +    A ++   + 
Sbjct: 487 YNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMN 546

Query: 324 SGKFTIDDDVLNALIGSVSSIDPRSAI--VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +  F  ++ + N +I  +  +   S    +  N + EK    + ++ +++     K   +
Sbjct: 547 ASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDT 606

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D  VE Y+ +S N    ++ ++  +++  C S R+  A  +  EMK   L  D+  Y +L
Sbjct: 607 DSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGAL 666

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           ++  C+++ ++ A  L+ ++   G   N+  YN LIS F  +G+++ A+ L+  M+  G+
Sbjct: 667 IDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGI 726

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
           + D  TYT++++GL ++ N+  A +++++ ++  ++    +    +  L ++G FL A+K
Sbjct: 727 SCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASK 786

Query: 562 LL 563
           +L
Sbjct: 787 ML 788



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 198/476 (41%), Gaps = 39/476 (8%)

Query: 109 QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168
           ++K  +I   S +   +I   ++ ++ + A  +FN+  F        +CN +  +    G
Sbjct: 405 RMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFND-SFESWIAHGFMCNKIFLLFCKQG 463

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            +D A      M  +G+E + + +   +   C    +    S+  E+   E  +   +  
Sbjct: 464 KVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEML--EKGLEPNNFT 521

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             ++I GF K K  + A+ V++++     + + + Y  +      +G             
Sbjct: 522 YSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVG------------- 568

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPR 347
                 +T+  +E +  LI E+R               +++     N++I G V   D  
Sbjct: 569 ------QTSKAKEMLQNLIKEKR---------------YSMSCTSYNSIIDGFVKVGDTD 607

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
           SA+  +  M E G+ P + T ++L    CK N+ D  +E+   + + +   D+ +Y  ++
Sbjct: 608 SAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALI 667

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              C    ++ AY +  E+   GL P+VS YNSL+        +  A  L+ +M   G S
Sbjct: 668 DGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGIS 727

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            +L TY  +I    + G I  A  L+  +L+ G+ PD   +  L+ GL ++     A ++
Sbjct: 728 CDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKM 787

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-RGLSSDLGHSDSHVILLKS 582
             +    DV     + ST +    R G+   A +L    L   + H D+   LL S
Sbjct: 788 LEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS 843



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 6/348 (1%)

Query: 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA 229
           +D A  +F EM  +G+E +   + + I  F +N        +++++    ++     VI 
Sbjct: 500 MDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNA--SNFEANEVIY 557

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKK 287
             II+G CK  +  +A ++L  L I+E +      +Y  + + F  +G         ++ 
Sbjct: 558 NTIINGLCKVGQTSKAKEMLQNL-IKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREM 616

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
            + G +P    +   I G     R+  A E+   + S +  +D     ALI G     D 
Sbjct: 617 SENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDM 676

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           ++A   F+ + E G +P +S  ++L        K D  +++YK +  +    D+ +Y  M
Sbjct: 677 KTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTM 736

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +  L   G +  A  +  E+   G+ PD   +  L+    ++     A K+ ++M     
Sbjct: 737 IDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDV 796

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           + N+  Y+ +I+     G +  A RL   MLEKG+  D T +  L+ G
Sbjct: 797 TPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/449 (20%), Positives = 181/449 (40%), Gaps = 71/449 (15%)

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK------------- 217
           + A+K+F  +  RG E   + F + +   C+   L   L +L E+R              
Sbjct: 256 EEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTS 315

Query: 218 ------RENSM--------------INGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRE 256
                 +E +M              I  SVIA   +++G+CKG  + +A  + + +    
Sbjct: 316 VIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEG 375

Query: 257 CKPDFIAYRIVAEEF---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
             PD + + ++ E F     M    E  + +K  R   +AP +      I G +      
Sbjct: 376 LAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVR---IAPSSVLVHTMIQGCLKAESPE 432

Query: 314 EAKEL----GEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
            A E+     E  ++  F  +   L  L      +D  +A  F   M +KG  P +   +
Sbjct: 433 AALEIFNDSFESWIAHGFMCNKIFL--LFCKQGKVD--AATSFLKMMEQKGIEPNVVFYN 488

Query: 370 NLSKNLCKRNKSD-------ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           N+    C+    D       E++E  K L  N++     +Y++++     +   + A+ V
Sbjct: 489 NMMLAHCRMKNMDLARSIFSEMLE--KGLEPNNF-----TYSILIDGFFKNKDEQNAWDV 541

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM-----FASGCSGNLKTYNILI 477
           I +M     + +   YN+++   C+      AK++   +     ++  C+    +YN +I
Sbjct: 542 INQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCT----SYNSII 597

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             F +VG+ + A+  +  M E G +P+  T+TSL+ G C+   +  A E+ ++  + ++ 
Sbjct: 598 DGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELK 657

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGL 566
           L        +   C++     A  L   L
Sbjct: 658 LDLPAYGALIDGFCKKNDMKTAYTLFSEL 686



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 1/205 (0%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F  M+++  VP +  ++N+  +L + N  DE  E+Y  +       D  +  +++ 
Sbjct: 188 AVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMR 247

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCS 467
                 +  EA  + + +  +G +PD   ++  ++A C+   L  A  L  +M    G  
Sbjct: 248 ASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVP 307

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            + +TY  +I  F + G +E A+R+   M+  G+       TSL+ G C+   L  A ++
Sbjct: 308 ASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDL 367

Query: 528 FNKSVNHDVMLARSILSTFMISLCR 552
           FN+     +   + + S  +   C+
Sbjct: 368 FNRMEEEGLAPDKVMFSVMVEWFCK 392



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 20/260 (7%)

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357
           DY     GL+V+R++                  ++VL++L+ S + ID    I  +N M+
Sbjct: 186 DYAVDCFGLMVDRKVVPF-----------VPYVNNVLSSLVRS-NLIDEAKEI--YNKMV 231

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G      T   L +   +  K +E V++++ + +     D   +++ V   C +  L 
Sbjct: 232 LIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLV 291

Query: 418 EAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
            A  +++EM+ K G+      Y S++ A  +E  +  A ++ D+M   G   ++     L
Sbjct: 292 MALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSL 351

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF--NKSVNH 534
           ++ + +  E+  AL LF+ M E+G+APD   ++ ++E  C+   ++ A E +   KSV  
Sbjct: 352 VNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVR- 410

Query: 535 DVMLARSILSTFMISLCRRG 554
             +   S+L   MI  C + 
Sbjct: 411 --IAPSSVLVHTMIQGCLKA 428


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 159/355 (44%), Gaps = 3/355 (0%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +      +  + +F EM  RG++++     + I  FC    +    S+  +  K
Sbjct: 44  NRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLK 103

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R        VI   +I G C+  + E A  +L E+ +  C PD +    +   +   G +
Sbjct: 104 R--GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKI 161

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   +       G+ P    Y  FI G     +I EA EL + +       +    N L
Sbjct: 162 DKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTL 221

Query: 338 IGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I ++  ++ PR A V F  M   G  P +   S L    CK+   DE++ +++ +     
Sbjct: 222 IKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLV 281

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D+  Y ++++ +C S ++++A  V+  +  +GL PDV  Y +L++  CRE  +  A +
Sbjct: 282 KPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALR 341

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           L+ +M   GC     +YN+L+    +  +    ++L H M ++G   DA T T L
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFL 396



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 167/381 (43%), Gaps = 4/381 (1%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G +D+AL  F+ M  R  +   I F   +       K   V+S+  E+  R     N   
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFR-GIKYNVCT 77

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
           +++LI + FC    V+  F V  +   R  KPD + +  + +    +G       +LK+ 
Sbjct: 78  LSILI-NCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM 136

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP- 346
             +G  P        + G   + +I + +++  ++VS     D    +  I     ++  
Sbjct: 137 GLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKI 196

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A+  F+ M  +G VP   T + L K LC+  +  +   +++ + A     D+ +Y+ +
Sbjct: 197 DEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTL 256

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C  G L E   + QEM+R+ + PD+  Y  ++   CR   ++ AK++  ++   G 
Sbjct: 257 LDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGL 316

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             ++ TY  L+      G I  ALRLF  M E G  P + +Y  LL+G  Q  +     +
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376

Query: 527 VFNKSVNHDVMLARSILSTFM 547
           + ++  +     A ++  TF+
Sbjct: 377 LIHEMADRG-FYADAVTRTFL 396



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 124/244 (50%), Gaps = 2/244 (0%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G VP + T ++L +  C + K D++ +++ ++ +     D+ SY++ ++  C   ++ EA
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +  EM  +G+ P+   YN+L++A C+    R A+ L+ +M A G S ++  Y+ L+  
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDG 259

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           F + G ++  L LF  M  + V PD   YT ++ G+C+   ++ A EV ++ +   +   
Sbjct: 260 FCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPD 319

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIEHIK 597
               +  +  LCR G  + A +L R +  D  +  S S+ +LL+      +    ++ I 
Sbjct: 320 VHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIH 379

Query: 598 WIQE 601
            + +
Sbjct: 380 EMAD 383



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 107/228 (46%), Gaps = 5/228 (2%)

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
            A+  FN M+++   P +   + L  ++ +  K + +V ++K +       ++ + ++++
Sbjct: 23  DALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILI 82

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
           +  C    +   + V  +  ++G  PDV  + +L++  CR      A  L  +M   GC 
Sbjct: 83  NCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCV 142

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            ++ T N L+  +   G+I+   ++FH M+ KG+ PD  +Y+  + G C+   +  A E+
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 528 FNKSVNHDVMLARSILSTFMISLC-----RRGHFLVATKLLRGLSSDL 570
           F++  +  V+      +T + +LC     R    L       GLS D+
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDI 250



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 7/261 (2%)

Query: 154 PEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           P++  CNSL+    S G ID   K+F  M  +G++     + +FI  +C+  K+ + + +
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
            DE+  R   ++  +V    +I   C+  R  +A  +  ++      PD +AY  + + F
Sbjct: 203 FDEMSHR--GVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGF 260

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGKFTID 330
              G++ E  V+ ++ ++  V P    Y   I G+   R++ +AKE L  +IV G    D
Sbjct: 261 CKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG-LKPD 319

Query: 331 DDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
                AL+ G         A+  F  M E G +P   + + L +   + N +  +V++  
Sbjct: 320 VHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIH 379

Query: 390 VLSANDYFTDMESYNVMVSFL 410
            ++   ++ D  +   +  FL
Sbjct: 380 EMADRGFYADAVTRTFLKDFL 400


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 196/433 (45%), Gaps = 17/433 (3%)

Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEICNSLLAV--LASDGYIDNALKM 176
            Y  ++ +L +  +T+K  ++  E+K     IG  P I    + +  L     ID+A  +
Sbjct: 237 TYSALMVALGRRGDTRKIMNLLEEMK----SIGLRPNIYTYTICIRALGRARRIDDAWGI 292

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           F EM   G     I + V I   C   KL +   +   V+ R +S     V  + ++  F
Sbjct: 293 FKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY--VKMRASSHSPDRVTYITLMDKF 350

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K   +E   +  +E+ +    PD + Y I+ E     G V     +L      G+ P  
Sbjct: 351 GKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNL 410

Query: 297 NDYREFILGLIVERRICEAKELGEVIVS--GKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354
           + Y   I GL+  RR+ EA EL E + S   K T    VL       S  DP  AI  F 
Sbjct: 411 HTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSG-DPAKAIDTFE 469

Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
            M ++G +P+++  +     L +  +  E  +++  L       D  +YN+++     +G
Sbjct: 470 TMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAG 529

Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
           ++ +A  ++ EM  KG +PDV   NSL+    +   +  A K++ ++     +  + TYN
Sbjct: 530 QIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYN 589

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK---- 530
           IL++   + G+I  AL LF +M E G  P+  T+ SLL+ L +   +  A ++F +    
Sbjct: 590 ILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMM 649

Query: 531 SVNHDVMLARSIL 543
           + N DV+   +I+
Sbjct: 650 NCNPDVLTYNTII 662



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 119/527 (22%), Positives = 237/527 (44%), Gaps = 34/527 (6%)

Query: 85   LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++Y+ ++K  S + QI+    +L ++       D  +   +I +L +      A+ +F  
Sbjct: 516  VTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGR 575

Query: 145  VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
            +K N + + P +   N LL  L  +G I  AL++F  M+  G   +TI F   +    +N
Sbjct: 576  LK-NLK-LAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKN 633

Query: 203  AKLGQVLSMLDEVRKRENSMINGS---VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
              +   L M   +     +M+N +   +    II+G  +  R++ AF    +++ +   P
Sbjct: 634  DAVDLALKMFCRM-----TMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK-KFLSP 687

Query: 260  DFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
            D++    +       G V +  +VV++   +  +   +  + E +  ++ E  I EA   
Sbjct: 688  DYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISF 747

Query: 319  GEVIVSGKFTIDDDVLNALIGSV----SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN 374
             E++V      DD V+  LI  +     ++D ++  VF  F    G  PTL + + L   
Sbjct: 748  AEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQN--VFDKFTKNLGIHPTLESYNCLMDG 805

Query: 375  LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            L   N +++ +E+++ + +     +  +YN+++     S R+ + Y +  EM+ +G +P+
Sbjct: 806  LLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPN 865

Query: 435  VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
               +N ++ A  + + L  A  L+ ++ +   S    TY  LI    + G  E A+++F 
Sbjct: 866  AITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFE 925

Query: 495  NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI---SLC 551
             ML+ G  P++  Y  L+ G  +   +  A E+F K V   +   R  L ++ I    LC
Sbjct: 926  EMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI---RPDLKSYTILVECLC 982

Query: 552  RRGHFLVATKL-----LRGLSSDLGHSDSHVILLKSLADAREVEMAI 593
              G    A +      L GL  D   + S+  ++  L  +R ++ A+
Sbjct: 983  ITGRIDEAVQYFEELKLTGLDPD---TVSYNFIINGLGKSRRLDEAL 1026



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 110/510 (21%), Positives = 222/510 (43%), Gaps = 20/510 (3%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           A  +F   SQ  NF H+  + + +L+ L   R+I  +  V   ++   I  + + Y  I 
Sbjct: 114 AFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIF 173

Query: 127 PSL-IQGKNTQKAFSV--FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
            +L I+G   +  F++    EV F    +     N L+ +L   G+ + ALK++  M   
Sbjct: 174 KALSIKGGIGRAPFALRKMTEVGF---ILNAYSYNGLIHLLLP-GFCNEALKVYKRMISE 229

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGK 240
           G++ S   +   +          +++++L+E++    R N          + I    + +
Sbjct: 230 GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNI-----YTYTICIRALGRAR 284

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           R+++A+ +  E+    C PD I Y ++ +     G + + + +  K R    +P    Y 
Sbjct: 285 RIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYI 344

Query: 301 EFI--LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMI 357
             +   G + +    + +   E+ V G +  D      LI ++  S D   A    + M 
Sbjct: 345 TLMDKFGKVGDLETVK-RFWNEMEVDG-YAPDVVTYTILIEALCKSGDVDRAFDMLDVMT 402

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
            KG  P L T + +   L K  + DE +E+ + + +        SY + + +   SG   
Sbjct: 403 TKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPA 462

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           +A    + MK++G+ P ++  N+ +        +  A+ +++ +   G S +  TYN+L+
Sbjct: 463 KAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLM 522

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
             +S+ G+I+ A +L   M+ KG  PD     SL+  L +   + AA+++F +  N  + 
Sbjct: 523 KCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA 582

Query: 538 LARSILSTFMISLCRRGHFLVATKLLRGLS 567
                 +  +  L + G  L A +L   ++
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALELFGSMT 612



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 168/421 (39%), Gaps = 76/421 (18%)

Query: 113  NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EICNSLLAVLASDGYI 170
            N +  D  V   +I  L + K    A +VF++   N   I P  E  N L+  L    + 
Sbjct: 754  NSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNL-GIHPTLESYNCLMDGLLGSNFT 812

Query: 171  DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
            + AL++F++M   G   +   + +                +LD                 
Sbjct: 813  EKALELFEDMKSAGTHPNNFTYNL----------------LLDA---------------- 840

Query: 231  LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
               HG  K KR+ + + +  E+R R C+P+ I + I+                       
Sbjct: 841  ---HG--KSKRINKLYDLYSEMRSRGCEPNAITHNII----------------------- 872

Query: 291  GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
                        I  L+    + +A +L   ++SG F+        LI G + +     A
Sbjct: 873  ------------ISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQA 920

Query: 350  IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
            +  F  M++ G  P     + L     K  + D   E++K +       D++SY ++V  
Sbjct: 921  MKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVEC 980

Query: 410  LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            LC +GR+ EA    +E+K  GLDPD   YN ++    +   L  A  L+ +M   G S +
Sbjct: 981  LCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPD 1040

Query: 470  LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
            L TYN LI      G+++ A++++  +   G+ P   TY +L+ G     N   AF VF 
Sbjct: 1041 LYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100

Query: 530  K 530
            K
Sbjct: 1101 K 1101



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/519 (20%), Positives = 206/519 (39%), Gaps = 45/519 (8%)

Query: 88   HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
            +S++ +L  + +++A   +  ++K  K+      Y  ++  L +     KA  +F  +  
Sbjct: 554  NSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTE 613

Query: 148  NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
            +         NSLL  L+ +  +D ALKMF  M+        + +   I+      ++  
Sbjct: 614  SGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDY 673

Query: 208  VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV------------------- 248
                  +++K    +    V    +I G  +  RVE+A KV                   
Sbjct: 674  AFWFFHQMKK---FLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGE 730

Query: 249  -----LDELRIRE-------------CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
                 L E  I E             C+ D +   ++    K   ++  + V  K  + L
Sbjct: 731  LMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNL 790

Query: 291  GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI---GSVSSIDPR 347
            G+ P    Y   + GL+      +A EL E + S     ++   N L+   G    I+  
Sbjct: 791  GIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKL 850

Query: 348  SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
              +  ++ M  +G  P   T + +   L K N  ++ +++Y  L + D+     +Y  ++
Sbjct: 851  YDL--YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLI 908

Query: 408  SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
              L  +GR  +A  + +EM   G  P+   YN L+    +   +  A +L+ +M   G  
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 468  GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             +LK+Y IL+      G I+ A++ F  +   G+ PD  +Y  ++ GL +   L  A  +
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 528  FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
            F++  N  +       +  ++ L   G   VA K+   L
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 158/384 (41%), Gaps = 39/384 (10%)

Query: 101  NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
            N  D   K + ++  TL+S  Y  ++  L+    T+KA  +F ++K           N L
Sbjct: 781  NVFDKFTKNLGIHP-TLES--YNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 161  LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
            L        I+    ++ EM  RG E + I   + I    ++  L + L +  E+   + 
Sbjct: 838  LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897

Query: 221  SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280
            S    +     +I G  K  R E+A K+ +E+    C P+ + Y I+   F   G +   
Sbjct: 898  SPTPCTYGP--LIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFA 955

Query: 281  EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340
              + KK  K G+ P    Y   +  L +  RI EA +  E +                  
Sbjct: 956  CELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL-----------------K 998

Query: 341  VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400
            ++ +DP +  V +NF+I                 L K  + DE + ++  +       D+
Sbjct: 999  LTGLDPDT--VSYNFIIN---------------GLGKSRRLDEALSLFSEMKNRGISPDL 1041

Query: 401  ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460
             +YN ++  L  +G++  A  + +E++  GL+P V  YN+L+           A  ++ +
Sbjct: 1042 YTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKK 1101

Query: 461  MFASGCSGNLKTYNILISKFSEVG 484
            M   GCS N +T+  L +K+   G
Sbjct: 1102 MMVVGCSPNTETFAQLPNKYPRAG 1125


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 200/490 (40%), Gaps = 82/490 (16%)

Query: 79  NFTHSPLSYHSILKSLSLSRQINA---IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135
            +  S L+Y+++L +LS +   +A    DS+L     + +  +   Y  ++ +L    + 
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLS----DGVAPNVYTYNILVRALCGRGHR 206

Query: 136 QKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG 193
           ++A S+  +++      GP +   N+L+A     G +D A ++   M   G++ + + F 
Sbjct: 207 KEALSILRDMRG--AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTF- 263

Query: 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253
                                     NSM+NG           CK  ++E+A KV DE+ 
Sbjct: 264 --------------------------NSMVNG----------MCKAGKMEDARKVFDEMV 287

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
                PD ++Y  +   +   G   E   V  +  + G+ P    +   I        +C
Sbjct: 288 REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI------HVMC 341

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A  L                              A+     M E+G      T + L  
Sbjct: 342 KAGNL----------------------------ERAVTLVRQMRERGLQMNEVTFTALID 373

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
             CK+   D+ +   + +        +  YN +++  C  GR+ EA  ++ EM+ KGL P
Sbjct: 374 GFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           DV  Y++++ A C+      A +L  QM   G   +  TY+ LI        +  A  LF
Sbjct: 434 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLF 493

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
            NM++ G+ PD  TYTSL++G C+E N+++A  + +K V   V+      S  +  L + 
Sbjct: 494 KNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKS 553

Query: 554 GHFLVATKLL 563
              + A +LL
Sbjct: 554 ARAMEAQQLL 563



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/524 (21%), Positives = 217/524 (41%), Gaps = 69/524 (13%)

Query: 68  LGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
           +G       +PN     ++++S++  +  + ++     V  ++    +  D   Y  ++ 
Sbjct: 248 VGMMREGGLKPNL----VTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVG 303

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGV 185
              +   + +A SVF E+    + I P++    SL+ V+   G ++ A+ +  +M  RG+
Sbjct: 304 GYCKAGCSHEALSVFAEMTQ--KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361

Query: 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEE 244
           + + + F   I  FC+   L   L     VR  +   I  SV+    +I+G+C   R++E
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALL---AVRGMKQCRIKPSVVCYNALINGYCMVGRMDE 418

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKL---MGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           A ++L E+  +  KPD + Y  +   +       S FE    + +K   GV P    Y  
Sbjct: 419 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK---GVLPDAITYSS 475

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
            I  L  E+R+ +A                                   V F  MI+ G 
Sbjct: 476 LIRVLCGEKRLSDAH----------------------------------VLFKNMIKLGL 501

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
            P   T ++L    CK    +  + ++  +       D+ +Y+V+++ L  S R  EA  
Sbjct: 502 QPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQ 561

Query: 422 VIQEMKRKGLDPDVSFYNSLMEAC---------------CREDLLRPAKKLWDQMFASGC 466
           ++ ++  +   P  + Y++LM  C               C + L+  A K++  M     
Sbjct: 562 LLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNW 621

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + +   Y++LI      G +  AL     ML+ G AP++T+  SL+ GL +   +  A +
Sbjct: 622 NLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQ 681

Query: 527 VFNKSVNHDVMLARSILSTFMISL-CRRGHFLVATKLLRGLSSD 569
           V  + +N+   LA +  S  +I L    G+      +L G++ D
Sbjct: 682 VIQQLLNY-CSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKD 724



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 116/232 (50%)

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           NA++ ++S     SA  FF+ M+  G  P + T + L + LC R    E + + + +   
Sbjct: 160 NAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGA 219

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +YN +V+    +G +  A  ++  M+  GL P++  +NS++   C+   +  A
Sbjct: 220 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDA 279

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +K++D+M   G + +  +YN L+  + + G    AL +F  M +KG+ PD  T+TSL+  
Sbjct: 280 RKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 339

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           +C+  NL+ A  +  +     + +     +  +   C++G    A   +RG+
Sbjct: 340 MCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 123/535 (22%), Positives = 219/535 (40%), Gaps = 98/535 (18%)

Query: 47  LSPSLVARVINPYLLTHH-SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           LSP+ V+ V+    L     LAL FF WA +Q  +TH+   Y S +  L+++  ++ + S
Sbjct: 59  LSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKS 118

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           V  + +     ++ S                                     NSL+    
Sbjct: 119 VFCKFRGMGFLMNVSA-----------------------------------ANSLIKSFG 143

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR-----EN 220
           S G ++  L ++  M   GVE S     +F + F  N   G V S+  E  +R     EN
Sbjct: 144 SLGMVEELLWVWRGMKENGVEPS-----LFTYNFLLN---GLVNSVFIESAERVLEVMEN 195

Query: 221 SMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE------EFKL 273
             I   V+    +I G+C+  + ++AF+   ++ +R   PD I Y  + +      +F L
Sbjct: 196 GKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDL 255

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
             S++        +  L + P    Y   I GL  E +  E   + E ++     ++  +
Sbjct: 256 CLSLYHE----MDENGLEIPPHA--YSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAI 309

Query: 334 LNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
             ALI S +   +   A++ F  M ++G  P                             
Sbjct: 310 YTALIDSNAKCGNMGEAMLLFERMKKEGLEP----------------------------- 340

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
                 D+ +Y V+V+ +C SGRL EA   ++  +  G+  +   Y+SL++   +   + 
Sbjct: 341 ------DVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVH 394

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A+KL+++M   GC  +   YN LI   ++ G+ + AL  F  M ++G      TYT ++
Sbjct: 395 EAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMI 454

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            GL +E   + A ++++  ++  +    +      I LC  G    A KLL  L+
Sbjct: 455 NGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELA 509



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 193/432 (44%), Gaps = 9/432 (2%)

Query: 73  WASQQPNFTHSPL-SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131
           W   + N     L +Y+ +L  L  S  I + + VL+ ++  KI  D   Y  +I    Q
Sbjct: 155 WRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQ 214

Query: 132 GKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
              TQKAF  F +++    ++ P+     +L+    ++G  D  L ++ EM   G+E   
Sbjct: 215 VGKTQKAFEKFRDMEL--RNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPP 272

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
             + + I   C+  K  +  ++ +++ ++    +N ++   LI     K   + EA  + 
Sbjct: 273 HAYSLVIGGLCKEGKCVEGYAVFEKMIQK-GCKVNVAIYTALIDSN-AKCGNMGEAMLLF 330

Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
           + ++    +PD + Y +V       G + E    L+  R  GVA     Y   I GL   
Sbjct: 331 ERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKA 390

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTL 368
            R+ EA++L E +V      D    NALI +++       A+ FF  M ++G   T+ T 
Sbjct: 391 GRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTY 450

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + +   L + +K++E ++++ ++          ++  +   LC SG++  A  ++ E+  
Sbjct: 451 TIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAP 510

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
            G+ P+ +F   ++   C+   ++ A KL D     G     +   +LI+   + G  + 
Sbjct: 511 MGVIPETAF-EDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLINALRKAGNADL 569

Query: 489 ALRLFHNMLEKG 500
           AL+L H+ +  G
Sbjct: 570 ALKLMHSKIGIG 581



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 122/261 (46%), Gaps = 6/261 (2%)

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
           G +  +S  ++L K+       +EL+ V++ +  N     + +YN +++ L  S  +  A
Sbjct: 127 GFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESA 186

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             V++ M+   + PDV  YN++++  C+    + A + +  M     + +  TY  LI  
Sbjct: 187 ERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQA 246

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
               G+ +  L L+H M E G+      Y+ ++ GLC+E      + VF K +     + 
Sbjct: 247 CYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVN 306

Query: 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMAIEHIK 597
            +I +  + S  + G+   A  L   +  +    D  ++ +++  +  +  ++ A+E+++
Sbjct: 307 VAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLE 366

Query: 598 WIQESSPTMLQEISAELFASL 618
           + + +       ++A L++SL
Sbjct: 367 FCRVNGVA----VNAMLYSSL 383


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 214/488 (43%), Gaps = 43/488 (8%)

Query: 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179
             Y  +I + ++  N  +A  + +E+  +   +   +  SL+      G +++AL++FDE
Sbjct: 293 GTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDE 352

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL--IIHGFC 237
           +   GV  +   F V I ++C  +K+G V    +E+  R   M     + +L  ++ GF 
Sbjct: 353 VVEVGVTPNVAIFSVLI-EWC--SKIGNV-EKANELYTRMKCMGLQPTVFILNFLLKGFR 408

Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
           K   +E A+ +LD   +       + Y IV      +G V E   +  K    G+ P   
Sbjct: 409 KQNLLENAYLLLDG-AVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLV 467

Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFM 356
            Y   ILG   +  + +A E+   I+      +      L+ GS    D   A   F+ M
Sbjct: 468 SYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQM 527

Query: 357 IEKGRVPTLSTLSNLSKNLCK-------RNKSDELVE----------------------- 386
           +  G VPT  T +++   LCK       R+K +  ++                       
Sbjct: 528 VAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAI 587

Query: 387 -----VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
                VY+ +  ++   ++ +Y  +++  C S ++  A  +  +MKRKGL+ D++ Y +L
Sbjct: 588 DSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATL 647

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +   C+   +  A K + ++   G + N   YNI+IS +  +  +E AL L   M+   +
Sbjct: 648 IAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKI 707

Query: 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561
             D   YTSL++GL +E  L  A +++++ +   ++    + +  +  LC  G    A K
Sbjct: 708 PCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGK 767

Query: 562 LLRGLSSD 569
           +L+ +  +
Sbjct: 768 ILKEMDGN 775



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 199/482 (41%), Gaps = 18/482 (3%)

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           S++K   +   +N+   +  +V    +T + +++  +I    +  N +KA  ++  +K  
Sbjct: 332 SLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMK-- 389

Query: 149 CEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           C  + P   I N LL        ++NA  + D     G+  S + + + +   CE  K+ 
Sbjct: 390 CMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIA-SVVTYNIVLLWLCELGKVN 448

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLI-----IHGFCKGKRVEEAFKVLDELRIRECKPDF 261
           +  ++ D+       MI   +   L+     I G CK   +++A +V++ +     KP+ 
Sbjct: 449 EACNLWDK-------MIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNA 501

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           I Y I+ E     G       +  +    G+ P    +   I GL    R+ EA++    
Sbjct: 502 ITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNT 561

Query: 322 IVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
            +   F       N +I G V      SA   +  M      P + T ++L    CK NK
Sbjct: 562 FIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNK 621

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            D  ++++  +       D+  Y  +++  C    +  A     ++   GL P+   YN 
Sbjct: 622 MDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNI 681

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           ++ A    + +  A  L  +M  +    +LK Y  LI    + G++  AL L+  ML +G
Sbjct: 682 MISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRG 741

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           + PD   Y  L+ GLC    L+ A ++  +   +++     + +T +    + G+   A 
Sbjct: 742 IVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAF 801

Query: 561 KL 562
           +L
Sbjct: 802 RL 803



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 167/403 (41%), Gaps = 38/403 (9%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177
           D  + + I PSL+   +      +    K  C D   E+ N         G I++ LK  
Sbjct: 455 DKMIGKGITPSLVSYNHM-----ILGHCKKGCMDDAHEVMN---------GIIESGLK-- 498

Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-----LI 232
                  + ++ +  G F    CE+A      +M D+       M+   ++        I
Sbjct: 499 ----PNAITYTILMEGSFKKGDCEHA-----FNMFDQ-------MVAAGIVPTDYTFNSI 542

Query: 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292
           I+G CK  RV EA   L+    +   P  + Y  + + +   G++   E V ++  +  +
Sbjct: 543 INGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEI 602

Query: 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIV 351
           +P    Y   I G     ++  A ++ + +      +D  V   LI     + D  +A  
Sbjct: 603 SPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACK 662

Query: 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411
           FF+ ++E G  P     + +       N  +  + ++K +  N    D++ Y  ++  L 
Sbjct: 663 FFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLL 722

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
             G+L  A  +  EM  +G+ PD+  YN L+   C    L  A K+  +M  +  +  + 
Sbjct: 723 KEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVL 782

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            YN LI+   + G ++ A RL   ML+KG+ PD TTY  L+ G
Sbjct: 783 LYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 189/444 (42%), Gaps = 28/444 (6%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IGPEI--CNSLLAVLASDGYIDNAL 174
           DS V+ +++ S ++     +A   F  +    ED + P +   N LL  +     +++A 
Sbjct: 151 DSRVFNYLLISYVRANKITEAVECFRAM---LEDGVVPWVPFVNVLLTAMIRRNMVEDAH 207

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234
           ++FDEM+ R +        V +    +  K  +      +   R   +   S    ++I 
Sbjct: 208 RLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASY--SIVIQ 265

Query: 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE----REVVLKKKRKL 290
             C+G  ++ A K+++        P    Y  V      +G+  E    ++ ++  +  +
Sbjct: 266 AVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPV 325

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSA 349
            VA  T+     I G  V   +  A  L + +V    T +  + + LI   S I +   A
Sbjct: 326 NVAVATS----LIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKA 381

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL--SANDYFTDMESYNVMV 407
              +  M   G  PT+  L+ L K   K+N    L   Y +L  +  +    + +YN+++
Sbjct: 382 NELYTRMKCMGLQPTVFILNFLLKGFRKQNL---LENAYLLLDGAVENGIASVVTYNIVL 438

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
            +LC  G++ EA  +  +M  KG+ P +  YN ++   C++  +  A ++ + +  SG  
Sbjct: 439 LWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLK 498

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
            N  TY IL+    + G+ E A  +F  M+  G+ P   T+ S++ GLC+   +  A + 
Sbjct: 499 PNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDK 558

Query: 528 FNKSVNHDVMLARSILSTFMISLC 551
            N        + +S + T M   C
Sbjct: 559 LN------TFIKQSFIPTSMTYNC 576



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 2/225 (0%)

Query: 330 DDDVLNAL-IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D  V N L I  V +     A+  F  M+E G VP +  ++ L   + +RN  ++   ++
Sbjct: 151 DSRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLF 210

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448
             ++    + D  +  V++      G+  EA     +   +GL  D + Y+ +++A CR 
Sbjct: 211 DEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRG 270

Query: 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
             L  A KL +     G   +  TY  +I     +G    ALRL   M++  V  +    
Sbjct: 271 SDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVA 330

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
           TSL++G C   ++ +A  +F++ V   V    +I S  +I  C +
Sbjct: 331 TSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSV-LIEWCSK 374



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 80/187 (42%)

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           + NK  E VE ++ +  +     +   NV+++ +     + +A+ +  EM  + +  D  
Sbjct: 164 RANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCY 223

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
               LM AC +      A++ + Q    G   +  +Y+I+I       +++ A +L    
Sbjct: 224 TLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGD 283

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            E G  P   TY +++    +  N   A  + ++ V+  V +  ++ ++ +   C RG  
Sbjct: 284 EELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDV 343

Query: 557 LVATKLL 563
             A +L 
Sbjct: 344 NSALRLF 350



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 108/267 (40%), Gaps = 12/267 (4%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           + +F  + ++Y+ I+        I++ +SV +++  ++I+ +   Y  +I    +     
Sbjct: 564 KQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMD 623

Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
            A  + +++K    ++   +  +L+A       ++NA K F ++   G+  +TI + + I
Sbjct: 624 LALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMI 683

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSV-----IAVLIIHGFCKGKRVEEAFKVLDE 251
             +       + L+ ++        MIN  +     I   +I G  K  ++  A  +  E
Sbjct: 684 SAY-------RNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSE 736

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           +  R   PD   Y ++       G +     +LK+     + P    Y   I G   E  
Sbjct: 737 MLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGN 796

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI 338
           + EA  L + ++      DD   + L+
Sbjct: 797 LQEAFRLHDEMLDKGLVPDDTTYDILV 823


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 218/548 (39%), Gaps = 96/548 (17%)

Query: 65  SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---ITLDSSV 121
           S AL FFNWA Q+  +TH+  SY S+L+ L  +R +N   + L  ++      + L++  
Sbjct: 93  SKALQFFNWA-QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151

Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDE 179
           +  ++ +  +    Q++  VF  +K     + P +   NSLL +L   G  + A K++DE
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMK--SHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDE 209

Query: 180 M-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238
           M S  GV   T  F + I  FC N                                    
Sbjct: 210 MLSTYGVTPDTFTFNILIRGFCMNG----------------------------------- 234

Query: 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK--KKRKLGVAPRT 296
              V++ F++ ++L    C+PD + Y  + +     G V     V+K   K+ + + P  
Sbjct: 235 --MVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNV 292

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356
             Y   I G   +R I                                    A+  F  M
Sbjct: 293 VTYTTLIRGYCAKREI----------------------------------EKALAVFEEM 318

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGR 415
           + +G      T + L K LC+  K +++ ++ +  + +  F+ D  ++N ++   C +G 
Sbjct: 319 VNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGN 378

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF-------ASGCSG 468
           L +A  V + M    + PD + Y++L+ + C+      A+ L D++          GC  
Sbjct: 379 LDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKP 438

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            +  YN +     E G+ + A + F  ++ +G   D  +Y +L+ G C+E   ++ +E+ 
Sbjct: 439 LVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELL 497

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVA----TKLLRGLSSDLGHSDSHVILLKSLA 584
              +  D         + +  L      L+A     K+LR  S     S  H IL K L 
Sbjct: 498 VLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRS-SHRPNSSTFHSILAKLLE 556

Query: 585 DAREVEMA 592
             R  E A
Sbjct: 557 QGRASESA 564



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 27/297 (9%)

Query: 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM- 426
            ++L +N  +     E ++V+ ++ ++     + ++N +++ L   GR   A  V  EM 
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              G+ PD   +N L+   C   ++    ++++ +   GC  ++ TYN L+      G++
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 487 EGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
             A  +   M +K V   P+  TYT+L+ G C +  ++ A  VF + VN  +       +
Sbjct: 272 TVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYN 331

Query: 545 TFMISLCRRGHFLVATKLLRGLSSD------------LGHSDSHVILLKSLADAREVEMA 592
           T +  LC    F     +L G + D            L H   H     +L DA +V   
Sbjct: 332 TLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA---GNLDDALKVFER 388

Query: 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGKGC 649
           +  +K IQ  S T      + L  SL    + E    LL  L E+ +   + +G GC
Sbjct: 389 MSELK-IQPDSATY-----SALVRSLCQGGHYEKAEDLLDKLLERKI---LLSGDGC 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 8/201 (3%)

Query: 401 ESYNVMVSFLCTSGRLREAYGV---IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
           +SY  M+  L  +  L  A      I++  R  +  +  F+NSLM    R  L + + K+
Sbjct: 112 QSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKV 171

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
           +  M + G S ++ T+N L++   + G    A +++  ML   GV PD  T+  L+ G C
Sbjct: 172 FTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFC 231

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL---SSDLG-H 572
               +   F +FN              +T +  LCR G   VA  +++G+   S DL  +
Sbjct: 232 MNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPN 291

Query: 573 SDSHVILLKSLADAREVEMAI 593
             ++  L++     RE+E A+
Sbjct: 292 VVTYTTLIRGYCAKREIEKAL 312


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 223/540 (41%), Gaps = 67/540 (12%)

Query: 45  DSLSPSLVARVINPYLLTHHSLALGFFN-------------WASQQPNFTHSPLSYHSIL 91
           D L+PSLV+  +   L+   +LA  F N              A    +   SP     +L
Sbjct: 67  DKLTPSLVSTTLLS-LVKTPNLAFNFVNHIDLYRLDFQTQCLAIAVISKLSSPKPVTQLL 125

Query: 92  KSLSLSRQINAIDSVLKQVKVNKITLDSS---VYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           K +  SR+ N+I ++  ++ +    L++    ++  ++    Q +   +A   F  +K  
Sbjct: 126 KEVVTSRK-NSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEK 184

Query: 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208
                 E CN +L +L+    I+NA   + +M    ++ +   F + I   C+  KL + 
Sbjct: 185 GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKA 244

Query: 209 LSMLD--EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
              L   EV   + +++  + +    + GF    R+E A  ++ E++ +  +PD   Y  
Sbjct: 245 KGFLGIMEVFGIKPTIVTYNTL----VQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNP 300

Query: 267 -------------VAEEFKLMGSV------------------------FEREVVLKKKRK 289
                        V  E K +G V                        +  E+V     K
Sbjct: 301 ILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMV-----K 355

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRS 348
            G+ P    Y   I GL +E +I  A+ L   I      +D    N LI G     D + 
Sbjct: 356 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKK 415

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    + M+  G  PT  T ++L   LC++NK+ E  E+++ +       D+   N ++ 
Sbjct: 416 AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD 475

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G +  A+ +++EM    ++PD   YN LM   C E     A++L  +M   G   
Sbjct: 476 GHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKP 535

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  +YN LIS +S+ G+ + A  +   ML  G  P   TY +LL+GL +    + A E+ 
Sbjct: 536 DHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELL 595



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 121/310 (39%), Gaps = 79/310 (25%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           AI  F  M EKG  P   T +++   L + N+ +     Y  +   +  +++ ++N+M++
Sbjct: 174 AIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMIN 233

Query: 409 FLCTSGRLREAYG-----------------------------------VIQEMKRKGLDP 433
            LC  G+L++A G                                   +I EMK KG  P
Sbjct: 234 VLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQP 293

Query: 434 DVSFYNSLMEACCRE----DLLRPAKKLW----------------------------DQM 461
           D+  YN ++   C E    ++LR  K++                             D+M
Sbjct: 294 DMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEM 353

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              G      TYN LI       +IE A  L   + EKG+  D+ TY  L+ G CQ  + 
Sbjct: 354 VKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDA 413

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSDLGHSDSH 576
           + AF + ++ +   +   +   ++ +  LCR+     A +L      +G+  DL      
Sbjct: 414 KKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDL------ 467

Query: 577 VILLKSLADA 586
            +++ +L D 
Sbjct: 468 -VMMNTLMDG 476



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 120/264 (45%), Gaps = 2/264 (0%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++  L +  +I A + ++++++   I LDS  Y  +I    Q  + +KAF++ +E+
Sbjct: 364 TYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEM 423

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
             +          SL+ VL        A ++F+++  +G++   +     +   C    +
Sbjct: 424 MTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNM 483

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
            +  S+L E+     S+    V    ++ G C   + EEA +++ E++ R  KPD I+Y 
Sbjct: 484 DRAFSLLKEMDMM--SINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYN 541

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +   +   G      +V  +   LG  P    Y   + GL   +    A+EL   + S 
Sbjct: 542 TLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSE 601

Query: 326 KFTIDDDVLNALIGSVSSIDPRSA 349
               +D    ++I ++S++D + +
Sbjct: 602 GIVPNDSSFCSVIEAMSNLDAKKS 625


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 199/450 (44%), Gaps = 11/450 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--NTQKAFSVFN 143
           +Y +++ +L   R    +  +LK+++   + L  +VY F I   + G+     +A+ +F 
Sbjct: 229 TYSALMVALGKKRDSEMVMVLLKEME--DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286

Query: 144 EVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             + + E  GP++     L+  L + G ++NA ++F +M   G +   + +   + KF +
Sbjct: 287 --RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              L        ++    +  +   V   +++   CK +  +EAF   D +R +   P+ 
Sbjct: 345 FGDLDTFKEFWSQMEA--DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +       G + +   +L     +GV P    Y  FI          +A E  E 
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEK 462

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + +     +    NA + S++ +   R A   FN + E G  P   T + + K   K  +
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE V +   +  N    D+   N ++  L  +GR+ EA+ +   MK   L P V  YN+
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+    +E  ++ A +L++ M    CS N  ++N L+  F +  E+E AL++F  M    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             PD  TY +++ GL +E  +  AF  F++
Sbjct: 643 CKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 211/492 (42%), Gaps = 57/492 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ ++K  S   Q++   ++L ++  N    D  V   +I SL +     +A+ +F+ 
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K     + P +   N+LL+ L  +G +  A+++F+ M  +    +TI F   +  FC+N
Sbjct: 568 MKD--MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKN 625

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            ++   L M  ++   +       V+    +I+G  K  +V  AF    +L+ +   PD 
Sbjct: 626 DEVELALKMFSKMTVMD---CKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDH 681

Query: 262 IAYRI----------------VAEEF--------------KLMGSVF-----EREVVLKK 286
           +                    +A +F               LMG        ++ ++  +
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDV------LNALIG 339
           +  L    R +    F++ L+  R +C+ K EL    +  KFT    +       N LIG
Sbjct: 742 ELVLNGICRED---SFLIPLV--RVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIG 796

Query: 340 SVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +  +     A   F  M   G  P   T + L     K  K  EL E+YK + +     
Sbjct: 797 ELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKP 856

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +YN+++S L  S  L +A     ++      P    Y  L++   +   L  A +L+
Sbjct: 857 DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLF 916

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   GC  N   +NILI+ + ++G+ E A +LF  M+ +G+ PD  +YT L++ LC  
Sbjct: 917 EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 519 TNLQAAFEVFNK 530
             +  A   FN+
Sbjct: 977 GRVDEALYYFNE 988



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 230  VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-----FEREVVL 284
            +L +HG  K  ++ E F++  E+  R CKPD I Y IV        ++     F  ++V 
Sbjct: 829  LLAVHG--KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVS 886

Query: 285  KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
               R     PRT  Y   I GL    R+ EA  L E +       +  + N LI     I
Sbjct: 887  SDFRP---TPRT--YGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 345  -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
             D  +A   F  M+ +G  P L + + L   LC   + DE +  +  L +     D  +Y
Sbjct: 942  GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY 1001

Query: 404  NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            N +++ L  S R+ EA  +  EM+ +G+ PD+  YNSLM       ++  AK++++++  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 464  SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            +G   ++ TYN LI  +S     E A  ++ NM+  G  P+  TY  L
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 34/328 (10%)

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +VE+   V + ++ +  + D   Y  + +   + G + +   VL K RK G       Y 
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             I  L+++   C     GE                            A+  +  M+ +G
Sbjct: 197 GLI-HLLIQSGFC-----GE----------------------------ALEVYRRMVSEG 222

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P+L T S L   L K+  S+ ++ + K +       ++ ++ + +  L  +G++ EAY
Sbjct: 223 LKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAY 282

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + + M  +G  PD+  Y  L++A C    L  AK+L+ +M A+G   +   Y  L+ KF
Sbjct: 283 EIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKF 342

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           ++ G+++     +  M   G  PD  T+T L++ LC+  +   AF  F+      ++   
Sbjct: 343 NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSS 568
              +T +  L R G    A KLL  + S
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLDTMES 430



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/527 (20%), Positives = 217/527 (41%), Gaps = 48/527 (9%)

Query: 88   HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
            +S++ SL  + +++    +  ++K  K++     Y  ++  L +    QKA  +F  +  
Sbjct: 546  NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIX 605

Query: 148  NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
                      N+LL     +  ++ ALKMF +M+    +   + +   I+   +  K+  
Sbjct: 606  KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 208  VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV----LDELRIRECKP---D 260
                  +++K   SM    V    ++ G  K  ++ +A  +    + ++R R  +    D
Sbjct: 666  AFWFFHQLKK---SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWED 722

Query: 261  FIAYRIV----------AEEFKLMG--------------------SVFEREVVLKKKRKL 290
             +   +V          AEE  L G                     ++  ++  K  +KL
Sbjct: 723  LMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKL 782

Query: 291  GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
            G++P    Y   I  L+      +A +L + + +     D    N L+ +V     +   
Sbjct: 783  GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL-AVHGKSGKITE 841

Query: 351  VF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            +F  +  MI +   P   T + +  +L K N  D+ ++ +  L ++D+     +Y  ++ 
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901

Query: 409  FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             L   GRL EA  + +EM   G  P+ + +N L+    +      A +L+ +M   G   
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961

Query: 469  NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
            +LK+Y IL+      G ++ AL  F+ +   G+ PD   Y  ++ GL +   ++ A  ++
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 529  NKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
            N+  N  ++      ++ M++L   G    A ++     L GL  D+
Sbjct: 1022 NEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 321 VIVSGKFTI---DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLC 376
           ++V GK  I   +D+VL  L    S  DP  A+ +F  + E   V  T  T + + + L 
Sbjct: 77  MVVKGKTEIRVSEDEVLGVL---KSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLR 133

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
             +K +++  V++ +       D+++Y  +   L   G LR+   V+ +M++ G   +  
Sbjct: 134 VHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAY 193

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN L+    +      A +++ +M + G   +LKTY+ L+    +  + E  + L   M
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            + G+ P+  T+T  +  L +   +  A+E+F +  +          +  + +LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 557 LVATKLLRGLSSDLGHSDSHVILLKSL 583
             A +L   + ++ GH    VI +  L
Sbjct: 314 ENAKELFVKMKAN-GHKPDQVIYITLL 339


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 177/398 (44%), Gaps = 7/398 (1%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL+ +A     D  +   ++M   GV  +   + + I   C  ++L   L++L ++ K  
Sbjct: 71  LLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMK-- 128

Query: 220 NSMINGSVIAVL--IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             +  G  I  L  +++GFC G R+ EA  ++D++     +PD + +  +          
Sbjct: 129 --LGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKA 186

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   ++++    G  P    Y   I GL        A  L   +  GK   D  + + +
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246

Query: 338 IGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           I S+        A+  F  M  KG  P + T S+L   LC   +  +   +   +     
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ ++N ++      G+L EA  +  EM ++ +DP++  YNSL+   C  D L  A++
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           ++  M +  C  ++ TYN LI+ F +  ++   + LF +M  +G+  +  TYT+L+ G  
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           Q ++   A  VF + V+  V       +T +  LC+ G
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/483 (20%), Positives = 219/483 (45%), Gaps = 23/483 (4%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S + +  +L +++  ++ + + S  +++++  ++ +   Y  +I  L   + +Q +F++ 
Sbjct: 64  SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLC--RRSQLSFALA 121

Query: 143 NEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
              K      GP I   NSLL        I  A+ + D+M   G +  T+ F   +    
Sbjct: 122 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGS----VIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
           ++ K  + ++++      E  ++ G     V    +I+G CK    + A  +L+++   +
Sbjct: 182 QHNKASEAVALV------ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK 235

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            + D + Y  V +       V +   +  +    G+ P    Y   I  L    R  +A 
Sbjct: 236 IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 295

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRVPTLSTLSNLSKNL 375
            L   ++  K   +    N+LI + +       A   F+ MI++   P + T ++L    
Sbjct: 296 RLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355

Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
           C  ++ DE  +++ ++ + D   D+ +YN +++  C + ++ +   + ++M R+GL  + 
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415

Query: 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y +L+    +      A+ ++ QM + G   N+ TYN L+    + G++E A+ +F  
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475

Query: 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLC 551
           + +  + PD  TY  + EG+C+   ++  +++F     K V  DV+   +++S F    C
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGF----C 531

Query: 552 RRG 554
           ++G
Sbjct: 532 KKG 534



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 175/419 (41%), Gaps = 13/419 (3%)

Query: 183 RGVEFSTIGFGVFIWKFCENA----KLGQVLSMLDEVRKREN--SMINGSVIAVLIIHGF 236
           RG+ FS + +  +  K   NA    KL + + +  E+ K     S++  S +    +   
Sbjct: 20  RGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKL----LSAI 75

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
            K K+ +      +++ I     +   Y I+         +     +L K  KLG  P  
Sbjct: 76  AKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSI 135

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNF 355
                 + G     RI EA  L + +V   +  D      L+  +   +  S A+     
Sbjct: 136 VTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 195

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M+ KG  P L T   +   LCKR + D  + +   +       D+  Y+ ++  LC    
Sbjct: 196 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRH 255

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           + +A  +  EM  KG+ PDV  Y+SL+   C       A +L   M     + N+ T+N 
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           LI  F++ G++  A +LF  M+++ + P+  TY SL+ G C    L  A ++F   V+ D
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375

Query: 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMA 592
            +      +T +   C+    +   +L R +S    +G++ ++  L+     A + + A
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 181/433 (41%), Gaps = 11/433 (2%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +++S++     ++Q+     +  ++     + D+  Y  +I    +     +A  +F E
Sbjct: 165 FTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFRE 224

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +        P++    +L+  L   G  +  L M  +M   G   +T  +   +  +C  
Sbjct: 225 MT------QPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCRE 278

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K  +   +L+E+   ++ ++   V   ++++ +C+  R+  A +V + +R + C+P+  
Sbjct: 279 QKAEEAEKILNEMF--DSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVW 336

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F   G V++   +L + R+ GV P    Y   I G  ++  I  A  L  ++
Sbjct: 337 TYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLM 396

Query: 323 VSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
                  D    N LI ++        A   F+ +  +G  P   T + +   LCK  K 
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKF 456

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441
           D      + + +  Y  D  +Y+  +  LC +   +E    I EM +K + P    Y  +
Sbjct: 457 DVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIV 516

Query: 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
           +     E     A ++W QM + GCS ++ TY   +  +   G ++ A  +   M +   
Sbjct: 517 INRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRT 576

Query: 502 APDATTYTSLLEG 514
             DA  Y +L++G
Sbjct: 577 IVDAMAYNTLIDG 589



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 165/395 (41%), Gaps = 40/395 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L     + +A +    M   G       F   I  +C   +L     +  ++  
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPF 192

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  S    +V    +I GFC+  R++EA ++  E+     +PD   +  + +     G  
Sbjct: 193 RGFS--QDAVSYAALIEGFCEAGRIDEALELFREMT----QPDMYTHAALVKGLCDAGRG 246

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L+K ++LG  P T  Y   +     E++  EA+++                   
Sbjct: 247 EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKI------------------- 287

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                           N M + G +P + T + +    C+  +    V V++ +      
Sbjct: 288 ---------------LNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCE 332

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +YN +V   C +G++ +A  ++ +M+  G++PDV  YN L+   C +  +  A +L
Sbjct: 333 PNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRL 392

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              M  +G + +  TYN+LI    + G+++ A  LF  +  +G+ P++ T+ +++ GLC+
Sbjct: 393 LRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCK 452

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
                 A       ++          S F+ +LC+
Sbjct: 453 AGKFDVACTFLENMISAGYAPDTYTYSPFIENLCK 487



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 127/315 (40%), Gaps = 40/315 (12%)

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
           R    AP    Y   I  L     +  A+    ++V   +  D    N+LI G   +   
Sbjct: 121 RHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQL 180

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
             A   F  M  +G      + + L +  C+  + DE +E+++ ++  D +T    +  +
Sbjct: 181 EVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYT----HAAL 236

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG- 465
           V  LC +GR  E   ++Q+MK  G  P    Y +L++  CRE     A+K+ ++MF SG 
Sbjct: 237 VKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGL 296

Query: 466 ----------------------------------CSGNLKTYNILISKFSEVGEIEGALR 491
                                             C  N+ TYN ++  F   G++  A+ 
Sbjct: 297 MPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMA 356

Query: 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           L   M E GV PD  TY  L+ G C + ++ +AF +      + +   +   +  + +LC
Sbjct: 357 LLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALC 416

Query: 552 RRGHFLVATKLLRGL 566
           + G    A  L  GL
Sbjct: 417 KTGKVDEACSLFDGL 431



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 159/398 (39%), Gaps = 7/398 (1%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+        ++ A  +F +M  RG     + +   I  FCE  ++ + L +  E+ +
Sbjct: 168 NSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ 227

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            +            ++ G C   R EE   +L +++    +P   AY  + + +      
Sbjct: 228 PD------MYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKA 281

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E E +L +    G+ P        +     E R+  A  + E +       +    NA+
Sbjct: 282 EEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAI 341

Query: 338 I-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G  ++     A+   + M E G  P + T + L +  C          + +++  N  
Sbjct: 342 VQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL 401

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             D  +YNV++  LC +G++ EA  +   ++ +G+ P+   +N+++   C+      A  
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACT 461

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
             + M ++G + +  TY+  I    +    +  L     ML+K V P    YT ++  L 
Sbjct: 462 FLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLF 521

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            E N   A  ++ + V+          +T + + C  G
Sbjct: 522 NERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEG 559



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 161/408 (39%), Gaps = 47/408 (11%)

Query: 174 LKMFDEM-SHRGVEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIA 229
           L++F  M  H     +   +   I   C  A L    + LS++     R ++    S+I 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
                G+C+ +++E A  +  ++  R    D ++Y  + E F   G + E   + ++  +
Sbjct: 173 -----GYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ 227

Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
               P    +   + GL      C+A   GE                             
Sbjct: 228 ----PDMYTHAALVKGL------CDAGR-GE---------------------------EG 249

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +     M E G  PT    + L    C+  K++E  ++   +  +     + +  ++V+ 
Sbjct: 250 LCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNA 309

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C  GR+  A  V + M+ KG +P+V  YN++++  C    +  A  L DQM   G   +
Sbjct: 310 YCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPD 369

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TYN+LI      G I  A RL   M   G+A D  TY  L++ LC+   +  A  +F+
Sbjct: 370 VVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577
                 +       +T +  LC+ G F VA   L  + S     D++ 
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/486 (17%), Positives = 171/486 (35%), Gaps = 62/486 (12%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++I++    + ++    ++L Q++   +  D   Y  +I       +   AF +   +
Sbjct: 337 TYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLM 396

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           + N         N L+  L   G +D A  +FD + +RG+  +++ F   I   C+  K 
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKF 456

Query: 206 GQVLSMLDEVRKRENSMING----SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
               + L      EN +  G    +      I   CK K  +E    +DE+  ++ KP  
Sbjct: 457 DVACTFL------ENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPST 510

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
           + Y IV        +      +  +    G +P    Y   +     E R+ EA+ +   
Sbjct: 511 VNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTE 570

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIV--------------FFNFMI---------- 357
           +   +  +D    N LI   +SI      V               F F I          
Sbjct: 571 MKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRL 630

Query: 358 ---------------------------EKGRVPTLS-TLSNLSKNLCKRNKSDELVEVYK 389
                                      +K  VP+ + T  ++ +   +  + DE+  +  
Sbjct: 631 AEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVS 690

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           ++   +   + + YN +V+  C      +A+ ++  M   G  P++ FY  L+     E 
Sbjct: 691 LMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEG 750

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
               AK+++        + +   + ++I  F   G  +    +   + +    P   TY 
Sbjct: 751 QADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYA 810

Query: 510 SLLEGL 515
            L E L
Sbjct: 811 MLTEEL 816


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 174/380 (45%), Gaps = 12/380 (3%)

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-ECKP 259
           +N +   V+ MLD +++ + +++   ++ + I+  +C+ + +    K     RIR + +P
Sbjct: 73  KNKQFRIVIDMLDYMKRNKKTVVPADIL-LEILRKYCE-RYLTHVQKFAKRKRIRVKTQP 130

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           +  A+ ++ +     G V E E +L++ R   V P    +     G    R   +A +L 
Sbjct: 131 EINAFNMLLDALCKCGLVKEGEALLRRMRH-RVKPDATTFNVLFFGWCRVRDPKKAMKLL 189

Query: 320 EVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRV---PTLSTLSNLSK 373
           E ++      ++    A I +      +D   A   F FMI KG V   PT  T + +  
Sbjct: 190 EEMIQAGHKPENFTYCAAIDTFCQAGMVD--EAADLFEFMITKGSVVSAPTAKTFALMIV 247

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
            L K +K++E  E+   + +     D+ +Y  ++  +C +G++ EAY  + EM  KG  P
Sbjct: 248 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPP 307

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           D+  YN  +   C       A KL+ +M  S C+ +++TYN+LIS F E+ + +GA   +
Sbjct: 308 DIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTW 367

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553
             M E+    D  TY  ++ GL      + A  +  + VN  + L      +F++ L   
Sbjct: 368 KEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTV 427

Query: 554 GHFLVATKLLRGLSSDLGHS 573
           G+     KL   +     HS
Sbjct: 428 GNLKAIHKLSEHMKKFYNHS 447



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 199/523 (38%), Gaps = 87/523 (16%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLS----RQIN 101
            L+  +V +++   L      A  FF WA  Q +++H P++Y+ ++  LS +    +Q  
Sbjct: 20  DLTTPVVCKILQR-LQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFR 78

Query: 102 AIDSVLKQVKVNKIT-LDSSVYRFIIPSLIQGKNTQ-KAFSVFNEVKFNCEDIGPEI--C 157
            +  +L  +K NK T + + +   I+    +   T  + F+    ++   +   PEI   
Sbjct: 79  IVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFAKRKRIRVKTQ---PEINAF 135

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL  L   G +     +   M HR V+     F V  + +C      + + +L+E+ +
Sbjct: 136 NMLLDALCKCGLVKEGEALLRRMRHR-VKPDATTFNVLFFGWCRVRDPKKAMKLLEEMIQ 194

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             +   N +  A   I  FC+   V+EA              D   + I        GSV
Sbjct: 195 AGHKPENFTYCAA--IDTFCQAGMVDEA-------------ADLFEFMITK------GSV 233

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNA 336
                          AP    +   I+ L    +  E  EL G +I +G         + 
Sbjct: 234 VS-------------APTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDV 280

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
           + G   +     A  F + M  KG  P + T +   + LC+  KSDE +++Y  +  +  
Sbjct: 281 IEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRC 340

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
              +++YN+++S             +  EM     DPD +F                   
Sbjct: 341 APSVQTYNMLIS-------------MFFEMD----DPDGAF------------------N 365

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
            W +M    C  +++TY ++I+   +    + A  L   ++ KG+      + S L  L 
Sbjct: 366 TWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLS 425

Query: 517 QETNLQAAF---EVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
              NL+A     E   K  NH  M  R  LS    S   RG F
Sbjct: 426 TVGNLKAIHKLSEHMKKFYNHS-MARRFALSEKRKSTKLRGKF 467


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 132/554 (23%), Positives = 233/554 (42%), Gaps = 48/554 (8%)

Query: 8   DLATRISQAIIS-ASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSL 66
           D+   IS++I +  +N   P     P L++ L       SL+   +  +IN   L+   L
Sbjct: 27  DILYTISESINTIHNNNPNPDYSLNPTLKRIL------PSLTSHHITNLINLNPLSLPPL 80

Query: 67  AL-GFFNWASQQPNFTHSPLSYHSI---LKSLSLSRQINAI------------------- 103
           +L  FFN+ + +P F H+  +Y ++   L S +L  Q +++                   
Sbjct: 81  SLFSFFNYLASRPPFRHTLHNYSTMAHFLSSHNLLSQTHSLFLFIISKMGHHSSTSLISS 140

Query: 104 --DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161
              +V    + N   L   V+  +I +    +  + A      VK N   I    C+ LL
Sbjct: 141 LIQTVPTHHRHNHSVL---VFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLL 197

Query: 162 A-VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS---MLDEVRK 217
             V+  +    +  + + E+   G   +   F + +  FC   K+G V++   + DE+ +
Sbjct: 198 RRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFC---KIGDVMNARMVFDEISR 254

Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           R    +  SV++   +I G+C+ K VEE F +   +      PD   Y  +         
Sbjct: 255 RG---LRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESR 311

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V E   +  +  ++G+ P    +   I G     +I  A    E++       D    NA
Sbjct: 312 VEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNA 371

Query: 337 LI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           LI G     D + A    N MI  G  P   T + L    CK    D  +E+   +    
Sbjct: 372 LINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEG 431

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D  ++  ++S LC  GR+R+A  ++++M   G  PD   Y  +++  C++  ++   
Sbjct: 432 IELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGA 491

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           KL  +M   G    + TYN L++ F + G+++ A  L H ML   V P+  T+  LL+G 
Sbjct: 492 KLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGH 551

Query: 516 CQETNLQAAFEVFN 529
           C+  +    F++FN
Sbjct: 552 CKHGS-SVDFKIFN 564



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 136/272 (50%), Gaps = 5/272 (1%)

Query: 333 VLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           + N L+     I D  +A + F+ +  +G  P++ + + L    C+    +E   +  V+
Sbjct: 228 LFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVM 287

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            +     D+ +Y+ +++ LC   R+ EA G+  EM   GL P+   + +L++  C+   +
Sbjct: 288 ESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKI 347

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A + ++ M   G   +L TYN LI+     G+++ A +L + M+  G  PD  T+T+L
Sbjct: 348 DLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTL 407

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571
           ++G C++ ++ +A E+ ++ V   + L     +  +  LCR G    A ++L+ + S  G
Sbjct: 408 MDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLS-AG 466

Query: 572 H---SDSHVILLKSLADAREVEMAIEHIKWIQ 600
           H     ++ +++       +V+M  + +K +Q
Sbjct: 467 HKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQ 498



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 101/209 (48%)

Query: 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
           P     F+  +++ G  P +   + L    CK         V+  +S       + S+N 
Sbjct: 207 PGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNT 266

Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
           ++S  C S  + E + +   M+ + + PDV  Y++L+   C+E  +  A  L+D+M   G
Sbjct: 267 LISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
              N  T+  LI    + G+I+ ALR F  M ++G+ PD  TY +L+ GLC++ +L+ A 
Sbjct: 327 LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEAR 386

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRG 554
           ++ N+ + +     +   +T M   C+ G
Sbjct: 387 KLLNEMIGNGFKPDKITFTTLMDGCCKDG 415



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484
           E+   G  P+V  +N LM   C+   +  A+ ++D++   G   ++ ++N LIS +    
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSK 275

Query: 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544
            +E    L   M  + ++PD  TY++L+ GLC+E+ ++ A  +F++     ++      +
Sbjct: 276 NVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFT 335

Query: 545 TFMISLCRRGHFLVATKLL-----RGLSSDL 570
           T +   C+ G   +A +       RG+  DL
Sbjct: 336 TLIDGQCKHGKIDLALRNFEIMKDRGIRPDL 366


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 201/486 (41%), Gaps = 54/486 (11%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N LL+ +      D  + +  +M   G+      F + I  FC   ++   LS+L ++ K
Sbjct: 89  NRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLK 148

Query: 218 ---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
                + +  GS     +++GFC+  RV +A  ++D++     +PD +AY  + +     
Sbjct: 149 LGYEPDRVTIGS-----LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDS---- 199

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334
                    L K R      R ND  +F             KE+G   +         ++
Sbjct: 200 ---------LCKTR------RVNDALDFF------------KEIGRKGIRPNVVTYTALV 232

Query: 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           N L  S    D   A      MI++   P + T S L     K  K  E  E+++ +   
Sbjct: 233 NGLCNSGRWND---AARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRM 289

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               D+ +Y+ +++ LC   R+ EA  +   M  KG  PDV  YN+L+   C+   +   
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDG 349

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            KL+ +M   G   N  TYN LI  F +VG+++ A   F  M   GV+PD  TY  LL G
Sbjct: 350 MKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGG 409

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF-----LVATKLLRGLSSD 569
           LC    L+ A  +F      ++ L     +T +  +C+ G       L  +  L+GL  D
Sbjct: 410 LCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPD 469

Query: 570 LGHSDSHVILLKSLADAREVEMAIEHIK---WIQESSPTMLQE----ISAELFASLSSSS 622
           +    + +  L +     EVE     +K    ++  S   L +    ISAEL   + S  
Sbjct: 470 IVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLCLGDGDITISAELIKKMLSCG 529

Query: 623 YPEPIL 628
           Y   +L
Sbjct: 530 YAPSLL 535



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 84/371 (22%)

Query: 67  ALGFFNWASQQ---PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
           AL FF    ++   PN     ++Y +++  L  S + N    +L+ +   KIT +   Y 
Sbjct: 209 ALDFFKEIGRKGIRPNV----VTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYS 264

Query: 124 FIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEM 180
            ++ + ++     +A  +F E V+ +   I P+I   +SL+  L     ID A +MFD M
Sbjct: 265 ALLDAFVKNGKVLEAKEIFEEMVRMS---IDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
             +G     + +                           N++IN          GFCK K
Sbjct: 322 VSKGCFPDVVSY---------------------------NTLIN----------GFCKAK 344

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           RVE+  K+  ++  R    + + Y  + + F  +G V + +    +    GV+P    Y 
Sbjct: 345 RVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYN 404

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             + GL      C+                    N L+          A+V F  M +  
Sbjct: 405 ILLGGL------CD--------------------NGLL--------EKALVIFEDMQKSE 430

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
               + T + + + +CK  K ++   ++  LS      D+ +Y  M+S LCT G   E  
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490

Query: 421 GVIQEMKRKGL 431
            +  +MK++GL
Sbjct: 491 ALYTKMKQEGL 501


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 228/536 (42%), Gaps = 75/536 (13%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQ-PNFTHSPLSYHSILKSLSLS---RQIN 101
           SL+P+  + ++    L    LAL FF+  S   P F H   +Y  IL  LS S   ++I+
Sbjct: 132 SLTPAEASEILKS--LNSPDLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRID 189

Query: 102 AIDSVLKQVKVNKIT--------------------------------LDSSVYRFIIPSL 129
            +  +L Q+  ++I                                 L++  YR ++ + 
Sbjct: 190 QVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWDLRLNAYTYRCLLQAH 249

Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
           I+ +++ +AF+V+ E+      +     N LL  LA D  +D + K+F +M  +      
Sbjct: 250 IRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDE 309

Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKV 248
             + + I    +  +  + L++ +E+  +       ++IA   +I    K   V++A  +
Sbjct: 310 YTYTIMIRMTGKMGRAEESLALFEEMLTKG---CTPNLIAYNTMIQALSKSGMVDKAILL 366

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL----------------KKKRKLGV 292
              +    C+P+   Y I+       G +   + VL                +   KLG 
Sbjct: 367 FCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGH 426

Query: 293 APRT----------------NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           +                   + Y   +  L    +  EA EL   +     + D  + N 
Sbjct: 427 SSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNT 486

Query: 337 LIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           ++ ++  +   S +   +  M + G  P + T + L  +L +  K  E VEV++ L ++D
Sbjct: 487 VLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD 546

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              D+ SYN +++ L  +G + EA+    EM+ KGL+PDV  Y++L+E   + D +  A+
Sbjct: 547 CKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMAR 606

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            L+D+M   GC  N+ TYNIL+      G     + L+  + E+G+ PD+ TY  L
Sbjct: 607 SLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 44/256 (17%)

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ V  EM  KG   D+  YN L++A  +++ L  + K++  M    C+ +  TY I+I 
Sbjct: 258 AFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIR 317

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH---- 534
              ++G  E +L LF  ML KG  P+   Y ++++ L +   +  A  +F   + +    
Sbjct: 318 MTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRP 377

Query: 535 ---------DVMLA-------------------RSILSTFMISLCRRGHFLVATKLLRGL 566
                    +V++A                   +SI +  + +L + GH   A +L   +
Sbjct: 378 NEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM 437

Query: 567 SS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE---SSPTMLQEISAELFASLSSS 621
            S  D G  D+++ +L+SL    +   AIE +  + E   S+ TM+          L   
Sbjct: 438 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQV 497

Query: 622 SYPEPILLLLHALQEK 637
           S+       LH L EK
Sbjct: 498 SH-------LHDLYEK 506



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 113/298 (37%), Gaps = 37/298 (12%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++    K ++++ ++KV  +++++ C PD   Y I+      MG   E   + ++    
Sbjct: 279 MLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTK 338

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   I  L                 S    +D                  AI
Sbjct: 339 GCTPNLIAYNTMIQAL-----------------SKSGMVD-----------------KAI 364

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
           + F  MI+    P   T S +   L    +   L EV   L  ++ F +   Y  +V  L
Sbjct: 365 LLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEV---LEVSNKFINKSIYAYLVRTL 421

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
              G   EA+ +   M       D   Y S++E+ CR      A +L  ++   G S + 
Sbjct: 422 SKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDT 481

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             YN ++S   ++ ++     L+  M + G  PD  TY  L+  L +   ++ A EVF
Sbjct: 482 MMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVF 539


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 207/472 (43%), Gaps = 50/472 (10%)

Query: 103 IDSVLK---QVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--C 157
           +DS L+   ++  N I  ++  Y  II    +  N  KA+ ++N++K   +DI P +   
Sbjct: 345 LDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN--KDISPTVFNV 402

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NSL+         + A K+FDE    G+        +  W  C+  K+ +  S+ +++ +
Sbjct: 403 NSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSW-LCKEGKMSEACSIWEKMVR 461

Query: 218 RENSMINGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           +    +  SV++   +I G C+   ++ A  V  E+  +  KP+ I Y ++ + +   G 
Sbjct: 462 KG---VRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGD 518

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
                                   E+  GL    R       GE I    FT +  ++N 
Sbjct: 519 T-----------------------EYAFGLYDRMR-------GENIAPSDFTCNI-IING 547

Query: 337 LI--GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           L   G  S    R        ++++G +PT  T + +     K    +  + VY  +   
Sbjct: 548 LCKAGRTSESQDR-----LKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
               ++ +Y  +++  C S  +  A  V+ EMK KG++ DV+ Y +L++  CR+  +  A
Sbjct: 603 GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNA 662

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
            +L  ++   G S N   Y+ +IS F ++  +E AL L   M+ +G+  D   YT+L+ G
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISG 722

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           L +E  L  A E++ + +   +M      S  +  LC +G    A K+L  +
Sbjct: 723 LLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/579 (20%), Positives = 241/579 (41%), Gaps = 52/579 (8%)

Query: 74  ASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133
           +S++ +F      ++ +L S   +++IN        +    I    +V    +  L++  
Sbjct: 144 SSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNN 203

Query: 134 NTQKAFSVFNE-----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
             ++A  V+N+     VK +C  I   I  S+      +G ++ A   F E  ++GVE  
Sbjct: 204 MIREARDVYNKMASKGVKGDCATISVMIRASM-----REGKLEEAEGWFREAKNKGVELD 258

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKR-----------------------ENSMING 225
              + + I   C+       L +L E+R +                       E   + G
Sbjct: 259 ARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKG 318

Query: 226 S----------VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
                      V+A  ++ G+CK   ++ A ++ D++      P+ + Y ++ E     G
Sbjct: 319 EMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNG 378

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVL 334
           ++ +   +  + +   ++P   +    I G +  R   EA +L  E +  G   +     
Sbjct: 379 NMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANV--FTY 436

Query: 335 NALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N+L+  +      S A   +  M+ KG  P++ + +N+    C++   D    V+  +  
Sbjct: 437 NSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLE 496

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                ++ +Y+V++      G    A+G+   M+ + + P     N ++   C+      
Sbjct: 497 KGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSE 556

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           ++    ++   G      TYN +I  F + G +  AL ++  M + GV+P+  TYT+L+ 
Sbjct: 557 SQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLIN 616

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
           G C+  N+  A +V ++  N  + L  ++    +   CR+G  + A++LL  L  ++G S
Sbjct: 617 GFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSEL-QEVGLS 675

Query: 574 DSHVI---LLKSLADAREVEMAIE-HIKWIQESSPTMLQ 608
            + V+   ++      + +E A+  H + I E  P  LQ
Sbjct: 676 PNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQ 714



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 103/267 (38%), Gaps = 42/267 (15%)

Query: 345 DPRSAIVFFNFMIEK-GRVPTLSTLSNL-------------SKNLCKRNKSDELVEVYKV 390
           DP+SA+ +F +  +K G + ++  L  L             ++NL  R  SD+   V  V
Sbjct: 77  DPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNLLNRFASDDWGPVPSV 136

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           + A                            +I+  +R   + D   +N L+ +  +   
Sbjct: 137 VVAR---------------------------LIESSRRLDFESDSRVFNYLLNSYVKTKR 169

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A   ++ +        L   NI +S+  +   I  A  +++ M  KGV  D  T + 
Sbjct: 170 INDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISV 229

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570
           ++    +E  L+ A   F ++ N  V L     S  + ++C++   + A  LLR +  D 
Sbjct: 230 MIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREM-RDK 288

Query: 571 GHSDSHVILLKSLADAREVEMAIEHIK 597
           G     VI  + +    +    +E +K
Sbjct: 289 GWVPHEVIFTRVIGVCMKQGKMLEAVK 315



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
           +I  +L++ L  +G +  A +++ EM  +G+    I + V I   C   +L     +L++
Sbjct: 714 QIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILED 773

Query: 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
           + ++   M     I   +I G  K   ++EAF++ +E+  +   PD   Y I+       
Sbjct: 774 MDRK--CMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKD 831

Query: 275 GSVF 278
           G++F
Sbjct: 832 GNLF 835


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 179/418 (42%), Gaps = 41/418 (9%)

Query: 140 SVFNEVKFNCE-DIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
           S+FN +   C   + P++C    L+      G +++    F  +   G   + I     +
Sbjct: 77  SLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLL 136

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL---R 253
              C+  +L + + +L + R  E       V    ++ GFC  KR EEA ++L  +   +
Sbjct: 137 KGLCDAKRLREAMDILIK-RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQ 195

Query: 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313
            R C P+ ++Y  V   F   G V +   +  +    G+ P    Y   I GL      C
Sbjct: 196 GRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGL------C 249

Query: 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSK 373
           +A+                           +D    +  F  MI+KG  P   T + L  
Sbjct: 250 KAQ--------------------------VVDRAEGV--FQQMIDKGVKPDNDTYNCLIH 281

Query: 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433
                 K  E+V + + +SA+    D  +Y  ++++LC +GR REA      M RKG+ P
Sbjct: 282 GYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKP 341

Query: 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493
           +V+ Y  L+     +  L     L + M  +G S +   +NI+ + +++   I+ A+ +F
Sbjct: 342 NVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIF 401

Query: 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551
           + M ++G++PD   + +L++ LC+   +  A   FN+ +N  V     + ++ +  LC
Sbjct: 402 NKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 198/485 (40%), Gaps = 50/485 (10%)

Query: 88  HSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           + +LK L  ++++  A+D ++K++     T D   Y  ++      K  ++A  + + + 
Sbjct: 133 NQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMA 192

Query: 147 FNCEDIGPEICNSLLAVLA---SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
            +     P    S   V+    ++G +D A  +F EM  RG++ + + +   I   C+  
Sbjct: 193 DSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 204 KL----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
            +    G    M+D+  K +N   N       +IHG+    + +E  ++L+E+     KP
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYN------CLIHGYLSIGKWKEVVRMLEEMSAHGLKP 306

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319
           D   Y  +       G   E         + G+ P    Y   I G   +  + E  +L 
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366

Query: 320 EVIVSGKFTIDDDVLN-----------------------------------ALIGSVSSI 344
            ++V    + D  + N                                   ALI ++  +
Sbjct: 367 NLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKL 426

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A++ FN M+ +G  P +   ++L   LC  +K ++  E Y  +       D+  +
Sbjct: 427 GRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFF 486

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++  LCT G++ +A  +I  M+R G  PDV  Y +L+   C    +  A K  D M +
Sbjct: 487 NTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLS 546

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   +  TYN L+  +   G I+ A  +F  ML  G+ P   TY+++L GL        
Sbjct: 547 VGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSE 606

Query: 524 AFEVF 528
           A E++
Sbjct: 607 AKELY 611



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 201/458 (43%), Gaps = 17/458 (3%)

Query: 77  QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136
           QPN     ++Y +++  L  ++ ++  + V +Q+    +  D+  Y  +I   +     +
Sbjct: 235 QPNV----VTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWK 290

Query: 137 KAFSVFNE-----VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191
           +   +  E     +K +C   G     SLL  L ++G    A   FD M  +G++ +   
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYG-----SLLNYLCNNGRCREARFFFDSMIRKGIKPNVAI 345

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           +G+ I  +     L ++  +L+ +   EN +     I  +I   + K   ++EA  + ++
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMV--ENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNK 403

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           ++ +   PD + +  + +    +G V +  +   +    GVAP    +   + GL    +
Sbjct: 404 MKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSN 370
             +AKE    +++     D    N ++ ++ +      A    + M   G  P + + + 
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTT 523

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L    C   + DE  +   V+ +     D  +YN ++   C +GR+ +AYGV +EM R G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
           + P V  Y++++           AK+L+  M  SG   N+  YNI+++  S+   ++ A 
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +LF ++  K    + TT+  ++  L +    + A  +F
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLF 681



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 193/472 (40%), Gaps = 64/472 (13%)

Query: 117 LDSSVYRFIIPS------LIQGKNTQKAFSVFNEV-KFNCED-IGPE--ICNSLLAVLAS 166
            DS + + I P+      LI G  T+ A S  +++     E+ + P+  I N +    A 
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              ID A+ +F++M  +G+    + FG  I   C   KLG+V    D+   + N M+N  
Sbjct: 391 KAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC---KLGRV----DDAVLKFNQMMNEG 443

Query: 227 VIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
           V   +     +++G C   + E+A +   E+  +  +PD + +  +       G V + +
Sbjct: 444 VAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQ 503

Query: 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GS 340
            ++    ++G  P    Y   I G  +  RI EA +  +V++S     D+   N L+ G 
Sbjct: 504 RLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGY 563

Query: 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSN------------------------------ 370
             +     A   F  M+  G  P + T S                               
Sbjct: 564 CRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623

Query: 371 -----LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
                +   L K N  DE  ++++ L + D+  ++ ++N+M+  L  SGR  +A  +   
Sbjct: 624 WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFAT 683

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           +   GL PDV  Y  + E    E  L     L+  M  SG + N +  N L+ +    G+
Sbjct: 684 ISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGD 743

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE------TNLQAAFEVFNKS 531
           I  A      + EK  + +A+T   L+  L ++      T+L   + V N++
Sbjct: 744 ITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRVLNEA 795



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 51/248 (20%)

Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP---TLSTLSNLSKNLCKRNKSDELVEV 387
           DD L    G ++   P S I F + +    RV    + +T S L  +L  R   +  ++V
Sbjct: 31  DDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKV 90

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG-------------------------- 421
                      D+ +Y++++   C  GRL   +                           
Sbjct: 91  TP---------DLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCD 141

Query: 422 ----------VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSG 468
                     +I+ M   G  PDV  YN+L++  C E     A +L   M  S    C  
Sbjct: 142 AKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPP 201

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N+ +Y  +I+ F   G+++ A  LF  M+++G+ P+  TYT++++GLC+   +  A  VF
Sbjct: 202 NVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 529 NKSVNHDV 536
            + ++  V
Sbjct: 262 QQMIDKGV 269



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-------EIEGALRLFHNMLEK---G 500
           L  A KL+D +       ++  +N L++  S V        E E  + LF+ M+ +    
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560
           V PD  TY+ L+   C+   L+  F  F   +     +   +++  +  LC       A 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 561 KLLRGLSSDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQES 602
            +L     +LG +    S+  LLK   + +  E A+E +  + +S
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADS 194


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 196/442 (44%), Gaps = 46/442 (10%)

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           L+ VK   + ++S  Y+ ++ + ++ ++  KAF V+ E++     +     N LL  LA 
Sbjct: 191 LRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAK 250

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
           D   + A ++F++M  R        + + I       K  + + + +E+      +  G 
Sbjct: 251 D---EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEM------ITEGL 301

Query: 227 VIAVL----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
            + V+    ++    KGK V++A +V   +    C+P+   Y ++       G +   + 
Sbjct: 302 TLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDG 361

Query: 283 VLK-KKR---------------KLG----------------VAPRTNDYREFILGLIVER 310
           V++  KR               KLG                V    + Y   +  L    
Sbjct: 362 VVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAG 421

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTLS 369
           +  EA E+   I       D  + N +  ++  +   S I   F  M + G  P + T +
Sbjct: 422 KTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYN 481

Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
            L  +  +  + DE + +++ L  +D   D+ SYN +++ L  +G + EA+   +EM+ K
Sbjct: 482 ILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEK 541

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           GL+PDV  Y++LME   + + +  A  L+++M   GC  N+ TYNIL+    + G    A
Sbjct: 542 GLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEA 601

Query: 490 LRLFHNMLEKGVAPDATTYTSL 511
           + L+  M ++G+ PD+ TYT L
Sbjct: 602 VDLYSKMKQQGLTPDSITYTVL 623



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 34/257 (13%)

Query: 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
           K ++  +V++ +       D  +Y +M+  +   G+  EA G+  EM  +GL  +V  YN
Sbjct: 250 KDEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYN 309

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL------------------ISK-- 479
           +LM+   +  ++  A +++ +M  +GC  N  TY++L                  ISK  
Sbjct: 310 TLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRY 369

Query: 480 ------------FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
                        S++G +  A RLF +M    V  +  +Y S+LE LC       A E+
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLAD 585
            +K     V+    + +T   +L +         L   +  D    D  ++ IL+ S   
Sbjct: 430 LSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGR 489

Query: 586 AREVEMAIEHIKWIQES 602
             EV+ AI   + ++ S
Sbjct: 490 VGEVDEAINIFEELERS 506



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 151/386 (39%), Gaps = 29/386 (7%)

Query: 154 PEICNSLLAVLASDGY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
           P + N ++ +L+        D    + D M    V  +     + I  F     L   L 
Sbjct: 133 PFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLR 192

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           ++ +   + NS          ++  + + +   +AF V  E+R    K D  AY ++ + 
Sbjct: 193 LVKKWDLKMNSFTYKC-----LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDA 247

Query: 271 F---KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER--RICEAKELGEVIVSG 325
               +    VFE      KKR      R ++Y   I+   + R  +  EA  L   +++ 
Sbjct: 248 LAKDEKACQVFED----MKKRHC----RRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE 299

Query: 326 KFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
             T++    N L+  ++    +D   AI  F+ M+E G  P   T S L   L       
Sbjct: 300 GLTLNVVGYNTLMQVLAKGKMVD--KAIQVFSRMVETGCRPNEYTYSLLLNLLVAEG--- 354

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           +LV +  V+  +  +     Y+ +V  L   G + EA+ +  +M    +  +   Y S++
Sbjct: 355 QLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSML 414

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           E+ C       A ++  ++   G   +   YN + S   ++ +I     LF  M + G +
Sbjct: 415 ESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPS 474

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVF 528
           PD  TY  L+    +   +  A  +F
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIF 500


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 213/504 (42%), Gaps = 33/504 (6%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           +L FF  AS+QP F     SY  I+  LS +R    +   L ++ V  +  ++ +   + 
Sbjct: 115 SLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVV--LCKNNYIASAVW 172

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
             L+         SV+ E  F+     P + + +L V A  G    AL +FD M   G  
Sbjct: 173 DELV---------SVYREFSFS-----PTVFDMILKVFAEKGMTKFALCVFDNMGKCGRV 218

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA-----VLIIHGFCKGKR 241
            S       +    +N +  + L + ++       MI   ++       ++++ +CK  R
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQ-------MIALGILPDIFSYTIMVNAYCKEGR 271

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
           V+EAF  + E+    C+P+ + Y  + + +  +G V   + VL    + G+   +  Y  
Sbjct: 272 VDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTL 331

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS---IDPRSAIVFFNFMIE 358
            I G     ++ +A++L   ++     +D+ V   LI +  +   +D   A+   + M++
Sbjct: 332 LIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVD--DALRIRDAMLK 389

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
            G        ++L    CK    ++  EV   +   +   D   YN ++   C      +
Sbjct: 390 VGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIK 449

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           A+ +  EM  KG++  V  YN+L++       +  A  +W+ M   G + N  TY  L+ 
Sbjct: 450 AFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLD 509

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538
            F +VG  + A+ ++ + L KG     T Y +++ G C+   L  A E+F K        
Sbjct: 510 AFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPP 569

Query: 539 ARSILSTFMISLCRRGHFLVATKL 562
                 T +   C+ G+ + A KL
Sbjct: 570 DEITYRTLIDGYCKVGNLVEALKL 593



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 209/487 (42%), Gaps = 5/487 (1%)

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165
           V +Q+    I  D   Y  ++ +  +     +AF+   E++ +C +      NSL+    
Sbjct: 243 VYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYV 302

Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
           S G +  A K+   MS +G+  ++  + + I  +C+  ++ Q   ++  + ++ N  ++ 
Sbjct: 303 SLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEK-NLFVDE 361

Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
            V  VLI H +C   RV++A ++ D +     K + +    +   +  +G V +   VL 
Sbjct: 362 HVYGVLI-HAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLV 420

Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345
             +   + P +  Y   + G   +    +A +L + + +          N L+ ++  + 
Sbjct: 421 SMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVG 480

Query: 346 P-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
               A+  +N M ++G  P   T   L     K    D  + ++K   +  +   +  YN
Sbjct: 481 HVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYN 540

Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
            M+   C   +L +A  +  +MK  G  PD   Y +L++  C+   L  A KL D     
Sbjct: 541 TMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERD 600

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           G S + + YN LI+      E++    L   M  + ++P+  TY SL+ G C +  +  A
Sbjct: 601 GISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKA 660

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583
           +  + K ++  +     I S  + SL R G    A  +L  ++  D   + +H + L   
Sbjct: 661 YNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPK- 719

Query: 584 ADAREVE 590
           +D R +E
Sbjct: 720 SDLRHLE 726



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/493 (20%), Positives = 206/493 (41%), Gaps = 40/493 (8%)

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158
            +N    VL  +K   +  DS  Y  ++    + ++  KAF + +E+     +      N
Sbjct: 411 HVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYN 470

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           +LL  L   G++++AL +++ M  RGV  + + +   +  F +     + + +  +   +
Sbjct: 471 TLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSK 530

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
                    +   +I GFCK +++ +A ++  +++     PD I YR + + +  +G++ 
Sbjct: 531 --GFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLV 588

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           E   +     + G++  T  Y   I G+     + +   L   + + + + +     +LI
Sbjct: 589 EALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLI 648

Query: 339 GSV--SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE------------- 383
                  +  ++   +F  MI+KG  P +   S +  +L +  K DE             
Sbjct: 649 AGWCDKGMMDKAYNAYFK-MIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDP 707

Query: 384 ----------------------LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
                                 +V+ +   + +   ++   YN+ ++ LC S  + +   
Sbjct: 708 IAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRR 767

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           ++ ++  KG  PD   Y SL+ AC     +  A  L D M  +G   N+  YN LI+   
Sbjct: 768 ILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLC 827

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           + G ++ A RLF+ +  KG++P   TY +L++G C+      A E+ +K     +  +  
Sbjct: 828 KSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSI 887

Query: 542 ILSTFMISLCRRG 554
             ST +  L   G
Sbjct: 888 TYSTLIHGLYMEG 900



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 111/215 (51%)

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A+  F+ M + GRVP+L + ++L  NL +  ++ + + VY+ + A     D+ SY +MV+
Sbjct: 205 ALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVN 264

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  GR+ EA+  ++EM+R   +P+V  YNSL++       +  AKK+   M   G   
Sbjct: 265 AYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPE 324

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           N +TY +LI  + + G++E A +L   M+EK +  D   Y  L+   C    +  A  + 
Sbjct: 325 NSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIR 384

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           +  +   + +   I ++ +   C+ GH   A ++L
Sbjct: 385 DAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVL 419



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 95/559 (16%), Positives = 210/559 (37%), Gaps = 53/559 (9%)

Query: 58  PYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           P ++T++SL  G+ +               +     +  +Y  ++K      Q+   + +
Sbjct: 289 PNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKL 348

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
           +  +    + +D  VY  +I +         A  + + +      +   ICNSL+     
Sbjct: 349 IGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCK 408

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
            G+++ A ++   M    ++  + G+   +  FC+     +   + DE+    N  +N +
Sbjct: 409 LGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEM---HNKGVNFT 465

Query: 227 VIA--VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284
           V+    L+ + F  G  VE A  + + +  R   P+ + Y  + + F  +G+     ++ 
Sbjct: 466 VVTYNTLLKNLFHVG-HVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIW 524

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
           K     G       Y   I G     ++ +A+E+   +    F  D+     LI     +
Sbjct: 525 KDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKV 584

Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSN-LSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                 +    M E+  + + + + N L   + +  +  +L  +   +   +   ++ +Y
Sbjct: 585 GNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTY 644

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA--------- 454
             +++  C  G + +AY    +M  KG+ P++   + ++ +  R   +  A         
Sbjct: 645 GSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIAD 704

Query: 455 -----------------------KKLWDQMFASGCS---GNLKTYNILISKFSEVGEIEG 488
                                  +K+ D       S    N   YNI I+   +   I+ 
Sbjct: 705 IDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDD 764

Query: 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548
             R+  ++L KG  PD  TY SL+        +  AF + +  +N  ++    + +  + 
Sbjct: 765 VRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALIN 824

Query: 549 SLCRRGHFLVATKLLRGLS 567
            LC+ G+   A +L   L+
Sbjct: 825 GLCKSGNLDRARRLFNKLA 843



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/466 (20%), Positives = 183/466 (39%), Gaps = 63/466 (13%)

Query: 54  RVINPYLLTHHSLALGFFN----------WASQ-QPNFTHSPLSYHSILKSLSLSRQINA 102
           R + P  +T+ +L   FF           W       FT S   Y++++       ++  
Sbjct: 495 RGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQ 554

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
              +  ++K      D   YR +I    +  N  +A  + +  + +      E+ NSL+ 
Sbjct: 555 AQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLIT 614

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV----LSMLDEVRKR 218
            +     +     +  EM +R +  + + +G  I  +C+   + +       M+D+    
Sbjct: 615 GVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDK-GIA 673

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
            N +I   +++ L  HG     +++EA  +L +  I +  P       V      +  + 
Sbjct: 674 PNIIIGSKIVSSLYRHG-----KIDEANLILHQ--IADIDPIAAHAHSVELPKSDLRHLE 726

Query: 279 EREVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKE-LGEVIVSGKFTIDDDVLN 335
            +++V    +K    P +N+  Y   I GL   + I + +  L ++++ G F  D+    
Sbjct: 727 TQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKG-FCPDNYTYC 785

Query: 336 ALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
           +LI + S++     A    + MI  G VP +                             
Sbjct: 786 SLIHACSAVGKVNEAFCLRDDMINAGLVPNIVV--------------------------- 818

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                   YN +++ LC SG L  A  +  ++ RKGL P V  YN+L++  C+      A
Sbjct: 819 --------YNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEA 870

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
            +L D+M   G   +  TY+ LI      G+ E ++ L + M++ G
Sbjct: 871 LELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 375 LCKRNK-----SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
           LCK N       DELV VY+  S +    DM     ++      G  + A  V   M + 
Sbjct: 161 LCKNNYIASAVWDELVSVYREFSFSPTVFDM-----ILKVFAEKGMTKFALCVFDNMGKC 215

Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
           G  P +   NSL+    +      A  +++QM A G   ++ +Y I+++ + + G ++ A
Sbjct: 216 GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEA 275

Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
                 M      P+  TY SL++G     ++  A +V        +       +  +  
Sbjct: 276 FNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKG 335

Query: 550 LCRRGHFLVATKLLRGLSSDLGHSDSHV--ILLKSLADAREVEMAI 593
            C+RG    A KL+  +       D HV  +L+ +   A  V+ A+
Sbjct: 336 YCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDAL 381


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 192/428 (44%), Gaps = 7/428 (1%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y++++     + +++    +L+ ++ + I+  +  Y  +I  L +    +KA  +  E+ 
Sbjct: 326 YNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMV 385

Query: 147 FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
               ++ P +   +SL   L   G  + +L MF  +   G +   I +   I  F     
Sbjct: 386 --QSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRD 443

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
           +G    ++ E+R   N  +  S     +IHGFCK +R+++A +V   +     + +    
Sbjct: 444 MGSACKLVHEMRM--NGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTC 501

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
            I+A+EF   G  +E   ++ + + LG+ P +  Y   I  L  E++  +A E+  V++ 
Sbjct: 502 NIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLK 561

Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
                     N LI G     +P  A++ +  M++ G  P++ T + L      R+K  E
Sbjct: 562 NNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQE 621

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
              ++K +       D   +  +++  C  G ++ A+ + +EM + G  P+V  Y  L++
Sbjct: 622 AYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLID 681

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
              +   +  A  L+++M     + +  TY  LI  +  +G  +    +F+ M E GV P
Sbjct: 682 GYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFP 741

Query: 504 DATTYTSL 511
           + T Y +L
Sbjct: 742 NYTAYATL 749



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 167/384 (43%), Gaps = 39/384 (10%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL   A     +    +F+E+   G   +   + + +  +C+ +  G+ + ++    
Sbjct: 216 CNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGS-FGKNIDIVKATE 274

Query: 217 KRENSMINGSVIAVLI----IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
             E   +NG    V+     IHG C+   VE A +++ +LRIR    +   Y  V  EF 
Sbjct: 275 VLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFC 334

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
             G + E   +L+  R  G++P    Y   I GL  + ++ +A +L E            
Sbjct: 335 RNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEE----------- 383

Query: 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
                                  M++    P+L T S+L   LCK   ++  + ++  L 
Sbjct: 384 -----------------------MVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLG 420

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
           A  Y  D+ SYN +++       +  A  ++ EM+  G  P+   +N L+   C+   L 
Sbjct: 421 AEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLD 480

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A +++  M   G   N+ T NI+  +F+  G    AL+L + + + G+ P++ TY  ++
Sbjct: 481 KALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVI 540

Query: 513 EGLCQETNLQAAFEVFNKSVNHDV 536
           + LC+E   + A+EV    + ++V
Sbjct: 541 KWLCKEQKTEKAWEVLPVMLKNNV 564



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 103/487 (21%), Positives = 208/487 (42%), Gaps = 43/487 (8%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG---KNTQ--KAF 139
           LS + +L   + + Q   I S+ +++K +  + +   Y  ++    +G   KN    KA 
Sbjct: 214 LSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKAT 273

Query: 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            V  E++ N E        + +  L   G ++ AL++  ++  R    ++  +   I +F
Sbjct: 274 EVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEF 333

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C N +L +   +L+++R    S    S    ++I G CK  +VE+A  +++E+     KP
Sbjct: 334 CRNGELHEAFELLEDMRSHGISPTAYSY--SILIDGLCKKGQVEKALDLIEEMVQSNVKP 391

Query: 260 DFIAY---------------------RIVAEEFK---------LMGSVFEREV-----VL 284
             + Y                      + AE +K         + G V +R++     ++
Sbjct: 392 SLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLV 451

Query: 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
            + R  G  P +  +   I G    +R+ +A E+  +++     ++    N +    +  
Sbjct: 452 HEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNRE 511

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                A+   N + + G VP   T + + K LCK  K+++  EV  V+  N+ F     Y
Sbjct: 512 GHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHY 571

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           N ++          +A  +  +M + G+ P +  Y  L+        ++ A  L+ +M  
Sbjct: 572 NTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIK 631

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
            G   +   +  +I+ F +VG+++ A  L+  M + G +P+  TYT L++G  +   +  
Sbjct: 632 KGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDK 691

Query: 524 AFEVFNK 530
           A  +FNK
Sbjct: 692 ADFLFNK 698



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 11/237 (4%)

Query: 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
            C+  +  E  E+ + + ++       SY++++  LC  G++ +A  +I+EM +  + P 
Sbjct: 333 FCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPS 392

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494
           +  Y+SL +  C+  L   +  ++  + A G   ++ +YN LI+ F    ++  A +L H
Sbjct: 393 LVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVH 452

Query: 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
            M   G  P++ T+  L+ G C+   L  A EVF   +   V L     +       R G
Sbjct: 453 EMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREG 512

Query: 555 HFLVATKLLRGLSSDLG---HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608
           HF  A KL+  +  DLG   +S ++ I++K L   ++ E A     W  E  P ML+
Sbjct: 513 HFWEALKLINEV-QDLGIVPNSYTYNIVIKWLCKEQKTEKA-----W--EVLPVMLK 561



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 5/173 (2%)

Query: 402 SYNVMVSFLCTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           +Y +M+++ C         + +A  V++EM+  G  P V  Y + +   CR   +  A +
Sbjct: 250 TYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALR 309

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           L   +       N   YN +I +F   GE+  A  L  +M   G++P A +Y+ L++GLC
Sbjct: 310 LIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLC 369

Query: 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
           ++  ++ A ++  + V  +V  +    S+    LC+ G   ++  +   L ++
Sbjct: 370 KKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAE 422



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 6/227 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++K L   ++      VL  +  N +   +  Y  +I    +  N  KA  ++   
Sbjct: 535 TYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLY--A 592

Query: 146 KFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K     I P I     L+ + ++   +  A  +F EM  +G+    I F   I  FC+  
Sbjct: 593 KMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVG 652

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
            +    ++ +E+ +   S     V    +I G+ K KR+++A  + ++++     PD + 
Sbjct: 653 DMKSAWALYEEMSQWGKS--PNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLT 710

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310
           Y  +   ++ +G       +  + ++ GV P    Y    L L V R
Sbjct: 711 YTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATLGLHLGVVR 757


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 208/506 (41%), Gaps = 39/506 (7%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y+  +     + +++       ++K + +  D   Y  +I  L +G    +A  +F +++
Sbjct: 271 YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQME 330

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
            N         N+++    S G  D A  + +    RG   S I +   +    +  +LG
Sbjct: 331 QNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLG 390

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           + L   +E++K  ++  N S   VLI    CK   VE AFKV D ++     P+ +   I
Sbjct: 391 EALRTFEEMKK--DAAPNLSTYNVLI-DMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNI 447

Query: 267 V------AEEFKLMGSVFE---------REVVLKKK-RKLGVAPRTND-YREF------- 302
           +      A++     S+FE          EV        LG   R +D YR +       
Sbjct: 448 MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSD 507

Query: 303 -------ILGLIVERRICEAKELGEVI----VSGKFTIDDDVLNALIGSV-SSIDPRSAI 350
                     LI     C  KE G  I    +    + D  +LNA +  V  + +     
Sbjct: 508 KIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGR 567

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F  +  +G +P + + S L   L K   + E  E++  +       D  +YN  +   
Sbjct: 568 ALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGF 627

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C SG++ +AY +++EMK KG  P V  Y S+++   + D L  A  L+++  ++G   N+
Sbjct: 628 CKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV 687

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y+ LI  F +VG I+ A  +   +++KG+ P+  T+  LL+ L +   +  A   F  
Sbjct: 688 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQN 747

Query: 531 SVNHDVMLARSILSTFMISLCRRGHF 556
             N          S  +  LCR   F
Sbjct: 748 MKNLKGTPNHITYSILINGLCRVRKF 773



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/481 (21%), Positives = 198/481 (41%), Gaps = 39/481 (8%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y++++     + + +   S+L++ K          Y  I+  L +     +A   F E+
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399

Query: 146 KFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203
           K   +D  P +   N L+ +L   G ++ A K+ D M   G+  + +   + I + C+  
Sbjct: 400 K---KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 204 KLGQVLSMLDEVRKR---------------------------------ENSMINGSVIAV 230
           KL +  S+ + +  +                                 ++  I  +V+  
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            +I  F K  R E+  K+  E+  R C PD        +     G   +   + ++ +  
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSR 576

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G  P    Y   I GL+      E  EL   +      +D    N  I G   S     A
Sbjct: 577 GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKA 636

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
                 M  KGR PT+ T  ++   L K ++ DE   +++   +N    ++  Y+ ++  
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               GR+ EAY +++E+ +KGL P+V  +N L++A  + + +  A   +  M     + N
Sbjct: 697 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPN 756

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
             TY+ILI+    V +   A   +  M ++G+ P+  TYT+++ GL +  N+  A  +F 
Sbjct: 757 HITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFE 816

Query: 530 K 530
           +
Sbjct: 817 R 817



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/541 (20%), Positives = 226/541 (41%), Gaps = 45/541 (8%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQ----------------- 109
           A+ +F W  ++ +    P +Y S+L  ++ + + +  + +L +                 
Sbjct: 111 AISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELI 170

Query: 110 ---VKVNKI--TLD-------------SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151
              +K NK+    D              S Y  +I +L   + +    ++F++++    +
Sbjct: 171 LSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYE 230

Query: 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211
           +   +  +++ V A +G +D AL + DEM    +    + + V I  F +  K+      
Sbjct: 231 VSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271
             E++   + ++   V    +I   CKG R++EA ++ +++      P   AY  +   +
Sbjct: 291 FHEIK--SHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGY 348

Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
              G   E   +L++++  G  P    Y   +  L  + R+ EA    E +       + 
Sbjct: 349 GSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNL 407

Query: 332 DVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              N LI  +    +  +A    + M E G  P + T++ +   LCK  K DE   +++ 
Sbjct: 408 STYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEG 467

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA---CCR 447
           ++      D  ++  ++  L   GR+ +AY + ++M      P+   Y SL+++   C R
Sbjct: 468 MNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGR 527

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
           ++      K++ +M   GCS +L+  N  +    + GE      LF  +  +G  PD  +
Sbjct: 528 KE---DGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMS 584

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           Y+ L+ GL +    +  +E+F        +L     +TF+   C+ G    A +LL  + 
Sbjct: 585 YSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMK 644

Query: 568 S 568
           +
Sbjct: 645 T 645



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 163/369 (44%), Gaps = 7/369 (1%)

Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
           SL+      G  ++  K+F EM HRG          ++    +  + G+  ++ +E++ R
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSR 576

Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
               I   +   ++IHG  K     E +++   ++ + C  D  AY    + F   G V 
Sbjct: 577 --GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVN 634

Query: 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           +   +L++ +  G  P    Y   I GL    R+ EA  L E   S    ++  + ++LI
Sbjct: 635 KAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLI 694

Query: 339 ---GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
              G V  ID   A +    +++KG  P + T + L   L K  + +E +  ++ +    
Sbjct: 695 DGFGKVGRID--EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLK 752

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455
              +  +Y+++++ LC   +  +A+   QEM+++GL P+   Y +++    +   +  A 
Sbjct: 753 GTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEAS 812

Query: 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
            L+++  A+G   +  +YN +I   S       A ++F     KG      T  +LL+ L
Sbjct: 813 SLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDAL 872

Query: 516 CQETNLQAA 524
            ++  L+ A
Sbjct: 873 QKDECLEQA 881



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 69  GFFNWAS-QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127
            F  W   Q+     + ++Y +++  L+ +  I    S+ ++ K N    DS+ Y  II 
Sbjct: 776 AFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIE 835

Query: 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173
            L   +   +A+ +F E +    +I  + C +LL  L  D  ++ A
Sbjct: 836 GLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQA 881


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 139/588 (23%), Positives = 244/588 (41%), Gaps = 71/588 (12%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +L P  V +V+    L    LAL FFN+     N  HS  SY  ++ +L  SR     +S
Sbjct: 66  TLRPHHVEQVLMN-TLDDAKLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANS 124

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGK------------NTQKAFSVFNEVK----FNC 149
           +L  + + + +    V+   + S  + K            N   +  +F+ V        
Sbjct: 125 LLHTLLLRE-SHPKCVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFA 183

Query: 150 EDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207
            ++ PE+   ++LL  L          ++FDE  + GV          +   CE   L  
Sbjct: 184 NNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCE---LKD 240

Query: 208 VLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
            L   +++R  E +  + S++   ++IHG CKG RV EA +V   L  +    D + Y  
Sbjct: 241 FLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCT 300

Query: 267 VAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
           +   F  +   FE  + ++ +  +LG +P        + GL  + +I +A EL  V+  G
Sbjct: 301 LVLGFCRLQQ-FEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYEL--VVKVG 357

Query: 326 KFTIDDD--VLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           +F    +  V NALI S+    D   A + ++ M      P   T S L  + C+  + D
Sbjct: 358 RFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLD 417

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
             +  +  +  +     + +YN +++  C  G L  A  +  EM  KG++P  + + SL+
Sbjct: 418 VAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLI 477

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKT------------------------------ 472
              C++  ++ A KL+++M  +G + N+ T                              
Sbjct: 478 SGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIK 537

Query: 473 -----YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
                YN+LI  +   G+I+ A  L  +M +KG+ PD  TY  L+ GLC    +  A + 
Sbjct: 538 PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDF 597

Query: 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDL 570
            +     +V L     S  +   C+ G  + A       + RG++ DL
Sbjct: 598 IDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDL 645



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/499 (21%), Positives = 212/499 (42%), Gaps = 13/499 (2%)

Query: 80  FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139
           F  +   Y++++ SL     ++  + +   + +  +  +   Y  +I S  +      A 
Sbjct: 361 FVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAI 420

Query: 140 SVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197
           S F+  +   + IG  +   NSL+      G +  A  +F EM+++GVE +   F   I 
Sbjct: 421 SYFD--RMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLIS 478

Query: 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257
            +C++ ++ +   + +++   +N +         +I G C   ++ EA ++ DEL  R+ 
Sbjct: 479 GYCKDLQVQKAFKLYNKMI--DNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKI 536

Query: 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
           KP  + Y ++ E +   G + +   +L+   + G+ P T  YR  I GL    R+ +AK+
Sbjct: 537 KPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKD 596

Query: 318 LGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376
             + +      +++   +AL+ G         A+     MI++G    L   + L     
Sbjct: 597 FIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGAL 656

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
           K+       ++ K +       D   Y  M+      G  ++A+     M  +   P+V 
Sbjct: 657 KQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVV 716

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            Y +LM   C+   +  A  L+ +M A+    N  TY   +   ++ G ++ A+ L H M
Sbjct: 717 TYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM 776

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           L KG+  +  T+  ++ G C+      A +V ++   + +       ST +   CR G+ 
Sbjct: 777 L-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNV 835

Query: 557 LVATKLL-----RGLSSDL 570
             + KL      RGL  DL
Sbjct: 836 GASVKLWDTMLNRGLEPDL 854



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/481 (20%), Positives = 214/481 (44%), Gaps = 15/481 (3%)

Query: 66  LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125
           +A+ +F+   Q      +  +Y+S++        ++A +S+  ++    +   ++ +  +
Sbjct: 418 VAISYFDRMIQD-GIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSL 476

Query: 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHR 183
           I    +    QKAF ++N++  N   I P +    +L++ L S   +  A ++FDE+  R
Sbjct: 477 ISGYCKDLQVQKAFKLYNKMIDN--GITPNVYTFTALISGLCSTNKMAEASELFDELVER 534

Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
            ++ + + + V I  +C + K+ +   +L+++ ++   ++  +     +I G C   RV 
Sbjct: 535 KIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK--GLVPDTYTYRPLISGLCSTGRVS 592

Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
           +A   +D+L  +  K + + Y  +   +   G + E      +  + G+      +   I
Sbjct: 593 KAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLI 652

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRV 362
            G + +       +L + +       D+ +  ++I + S     + A   ++ M+ +   
Sbjct: 653 DGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECF 712

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P + T + L   LCK  + D    ++K + A +   +  +Y   +  L   G ++EA G+
Sbjct: 713 PNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGL 772

Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
              M  KGL  +   +N ++   C+      A K+  +M  +G   +  TY+ LI ++  
Sbjct: 773 HHAM-LKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCR 831

Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSI 542
            G +  +++L+  ML +G+ PD   Y  L+ G C    L  AFE+       D ML R I
Sbjct: 832 SGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFEL------RDDMLRRGI 885

Query: 543 L 543
           +
Sbjct: 886 I 886


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 199/450 (44%), Gaps = 11/450 (2%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--NTQKAFSVFN 143
           +Y +++ +L   R    +  +LK+++   + L  +VY F I   + G+     +A+ +F 
Sbjct: 229 TYSALMVALGKKRDSEMVMVLLKEME--DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286

Query: 144 EVKFNCEDIGPEICNS--LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
             + + E  GP++     L+  L + G ++NA ++F +M   G +   + +   + KF +
Sbjct: 287 --RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
              L        ++    +  +   V   +++   CK +  +EAF   D +R +   P+ 
Sbjct: 345 FGDLDTFKEFWSQMEA--DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  +       G + +   +L     +GV P    Y  FI          +A E  E 
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEK 462

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
           + +     +    NA + S++ +   R A   FN + E G  P   T + + K   K  +
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440
            DE V +   +  N    D+   N ++  L  +GR+ EA+ +   MK   L P V  YN+
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500
           L+    +E  ++ A +L++ M    CS N  ++N L+  F +  E+E AL++F  M    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             PD  TY +++ GL +E  +  AF  F++
Sbjct: 643 CKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 200/486 (41%), Gaps = 38/486 (7%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y +I K+LS+   +  + +VL +++     L++  Y  +I  LIQ     +A  V+  +
Sbjct: 159 TYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM 218

Query: 146 KFN-------------------------------CEDIG--PEICNSLLA--VLASDGYI 170
                                              ED+G  P +    +   VL   G I
Sbjct: 219 VSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKI 278

Query: 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230
           D A ++F  M   G     + + V I   C   +L     +   V+ + N      VI +
Sbjct: 279 DEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF--VKMKANGHKPDQVIYI 336

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
            ++  F     ++   +   ++      PD + + I+ +         E        RK 
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSA 349
           G+ P  + Y   I GL+   RI +A +L   + S          N  I     S +   A
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKA 456

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  M  KG VP +   +    +L +  +  E   ++  L  N    D  +YN+M+  
Sbjct: 457 VETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKC 516

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
               G++ EA  ++ EM R G +PDV   NSL+++  +   +  A +++D+M     S  
Sbjct: 517 YSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPT 576

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TYN L+S   + G ++ A+ LF +M+EK  +P+  ++ +LL+  C+   ++ A ++F+
Sbjct: 577 VVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFS 636

Query: 530 KSVNHD 535
           K    D
Sbjct: 637 KMTVMD 642



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 211/492 (42%), Gaps = 57/492 (11%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           ++Y+ ++K  S   Q++   ++L ++  N    D  V   +I SL +     +A+ +F+ 
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 145 VKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +K     + P +   N+LL+ L  +G +  A+++F+ M  +    +TI F   +  FC+N
Sbjct: 568 MKD--MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKN 625

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            ++   L M  ++   +       V+    +I+G  K  +V  AF    +L+ +   PD 
Sbjct: 626 DEVELALKMFSKMTVMD---CKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDH 681

Query: 262 IAYRI----------------VAEEF--------------KLMGSVF-----EREVVLKK 286
           +                    +A +F               LMG        ++ ++  +
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741

Query: 287 KRKLGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDV------LNALIG 339
           +  L    R +    F++ L+  R +C+ K EL    +  KFT    +       N LIG
Sbjct: 742 ELVLNGICRED---SFLIPLV--RVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIG 796

Query: 340 SVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
            +  +     A   F  M   G  P   T + L     K  K  EL E+YK + +     
Sbjct: 797 ELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKP 856

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D  +YN+++S L  S  L +A     ++      P    Y  L++   +   L  A +L+
Sbjct: 857 DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLF 916

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           ++M   GC  N   +NILI+ + ++G+ E A +LF  M+ +G+ PD  +YT L++ LC  
Sbjct: 917 EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 519 TNLQAAFEVFNK 530
             +  A   FN+
Sbjct: 977 GRVDEALYYFNE 988



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 230  VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV-----FEREVVL 284
            +L +HG  K  ++ E F++  E+  R CKPD I Y IV        ++     F  ++V 
Sbjct: 829  LLAVHG--KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVS 886

Query: 285  KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
               R     PRT  Y   I GL    R+ EA  L E +       +  + N LI     I
Sbjct: 887  SDFRP---TPRT--YGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 345  -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
             D  +A   F  M+ +G  P L + + L   LC   + DE +  +  L +     D  +Y
Sbjct: 942  GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY 1001

Query: 404  NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
            N +++ L  S R+ EA  +  EM+ +G+ PD+  YNSLM       ++  AK++++++  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 464  SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
            +G   ++ TYN LI  +S     E A  ++ NM+  G  P+  TY  L
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 34/328 (10%)

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
           +VE+   V + ++ +  + D   Y  + +   + G + +   VL K RK G       Y 
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
             I  L+++   C     GE                            A+  +  M+ +G
Sbjct: 197 GLI-HLLIQSGFC-----GE----------------------------ALEVYRRMVSEG 222

Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P+L T S L   L K+  S+ ++ + K +       ++ ++ + +  L  +G++ EAY
Sbjct: 223 LKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAY 282

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + + M  +G  PD+  Y  L++A C    L  AK+L+ +M A+G   +   Y  L+ KF
Sbjct: 283 EIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKF 342

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
           ++ G+++     +  M   G  PD  T+T L++ LC+  +   AF  F+      ++   
Sbjct: 343 NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSS 568
              +T +  L R G    A KLL  + S
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLGTMES 430



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 108/530 (20%), Positives = 220/530 (41%), Gaps = 54/530 (10%)

Query: 88   HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE-VK 146
            +S++ SL  + +++    +  ++K  K++     Y  ++  L +    QKA  +F   ++
Sbjct: 546  NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIE 605

Query: 147  FNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              C    P     N+LL     +  ++ ALKMF +M+    +   + +   I+   +  K
Sbjct: 606  KKCS---PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 205  LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV----LDELRIRECKP- 259
            +        +++K   SM    V    ++ G  K  ++ +A  +    + ++R R  +  
Sbjct: 663  VNHAFWFFHQLKK---SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSF 719

Query: 260  --DFIAYRIV----------AEEFKLMG--------------------SVFEREVVLKKK 287
              D +   +V          AEE  L G                     ++  ++  K  
Sbjct: 720  WEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFT 779

Query: 288  RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            +KLG++P    Y   I  L+      +A +L + + +     D    N L+ +V     +
Sbjct: 780  KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL-AVHGKSGK 838

Query: 348  SAIVF--FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
               +F  +  MI +   P   T + +  +L K N  D+ ++ +  L ++D+     +Y  
Sbjct: 839  ITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGP 898

Query: 406  MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
            ++  L   GRL EA  + +EM   G  P+ + +N L+    +      A +L+ +M   G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 466  CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
               +LK+Y IL+      G ++ AL  F+ +   G+ PD   Y  ++ GL +   ++ A 
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 526  EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-----LRGLSSDL 570
             ++N+  N  ++      ++ M++L   G    A ++     L GL  D+
Sbjct: 1019 ALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 321 VIVSGKFTI---DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLC 376
           ++V GK  I   +D+VL  L    S  DP  A+ +F  + E   V  T  T + + + L 
Sbjct: 77  MVVKGKTEIRVSEDEVLGVL---KSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLR 133

Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
             +K +++  V++ +       D+++Y  +   L   G LR+   V+ +M++ G   +  
Sbjct: 134 VHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAY 193

Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
            YN L+    +      A +++ +M + G   +LKTY+ L+    +  + E  + L   M
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
            + G+ P+  T+T  +  L +   +  A+E+F +  +          +  + +LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 557 LVATKLLRGLSSDLGHSDSHVILLKSL 583
             A +L   + ++ GH    VI +  L
Sbjct: 314 ENAKELFVKMKAN-GHKPDQVIYITLL 339


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 227/499 (45%), Gaps = 22/499 (4%)

Query: 43  LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQI- 100
           LR  +    ++ V+N   L H +  LGF   A   +    ++ +++ ++++ L    ++ 
Sbjct: 101 LRIPVDAFALSTVVNSCCLMHRT-DLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVK 159

Query: 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160
           +A+    K V+ N    D  +Y  ++  L +  +TQKAF +   ++         I N +
Sbjct: 160 DAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIV 219

Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
           +     DG +D A  + +EM  + +    I +   I        LG+ LS  ++VR    
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLI------DGLGK-LSQWEKVRTLFL 272

Query: 221 SMINGSVIAVL-----IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            MI+ ++   +     +I G CK  +VE+A +++  +  +  +P+ I Y +V + + L G
Sbjct: 273 EMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRG 332

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
            +     +       G+ P    Y   I G + ++++ +A +L   I            +
Sbjct: 333 QMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCS 392

Query: 336 ALIGSVSSID-PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            L+  +  +     A +FF+ M   G +P L T   L     K    +E +  +  L   
Sbjct: 393 VLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERR 452

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
              T+++ Y  +++ LC +G+L +A+   +++   GL PDV  Y +++   C+E LL  A
Sbjct: 453 REDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 455 KKLWDQMFASGCSGNLKTYNILISKF---SEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           K +  +M  +GC  + +TYN+++  F   S+V E++  L+    +  K  + +A T   L
Sbjct: 513 KDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLK---EIAGKSFSFEAATVELL 569

Query: 512 LEGLCQETNLQAAFEVFNK 530
           ++ + ++ +L      F++
Sbjct: 570 MDIIAEDPSLLNMIPEFHR 588



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYK-VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
           T + L + L   NK  + V ++K ++  N    D   Y  ++  LC  G  ++A+ +++ 
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL 203

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485
           M++    PD   YN +++A C++ +L  A  L ++M       ++ TY  LI    ++ +
Sbjct: 204 MEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQ 263

Query: 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545
            E    LF  M+   + PD  T+ S+++GLC+E  ++ A E+    +   V       + 
Sbjct: 264 WEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNV 323

Query: 546 FMISLCRRGHFLVATKLL-----RGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600
            M   C RG    A ++      +G+  D+    S+  L+    + ++++ A++  + I 
Sbjct: 324 VMDGYCLRGQMGRARRIFDSMIDKGIEPDI---ISYTALINGYVEKKKMDKAMQLFREIS 380

Query: 601 ESS 603
           ++ 
Sbjct: 381 QNG 383



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL-STFMISLCRRGH 555
            +KG+  +  T+T+L+ GL  E  ++ A  +F K V  ++     ++  T M  LC++GH
Sbjct: 134 FKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGH 193

Query: 556 FLVATKLLRGLSSDLGHSDS 575
              A  LLR +   +   D+
Sbjct: 194 TQKAFDLLRLMEQGITKPDT 213


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 193/426 (45%), Gaps = 29/426 (6%)

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR- 218
           LL  +A     +  + +F  +   G+      F   I  FC  A+L   LS L ++ K  
Sbjct: 85  LLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLG 144

Query: 219 -ENSMIN-GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
            E S++  GS     +++GFC   R  EA  ++D++     +P+ + Y  + +     G 
Sbjct: 145 FEPSIVTFGS-----LVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQ 199

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI-CEAKELGEVIVSGKFTIDDDVL- 334
           V     VLK  +K+G+ P    Y   I  L         A+ L +++  G   I  DV+ 
Sbjct: 200 VNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMG---ISPDVIT 256

Query: 335 -NALIGSVSS----IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
            +ALI         ++ +     +N MI++   P + T ++L   LC     DE  +V  
Sbjct: 257 FSALIDVYGKEGQLLEAKKQ---YNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLN 313

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           VL +  +F +  +YN +++  C + R+ +   ++  M R G+D D   YN+L +  C+  
Sbjct: 314 VLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAG 373

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
               A+K+  +M + G   ++ T+NIL+    + G+I  AL    ++ +        TY 
Sbjct: 374 KFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYN 433

Query: 510 SLLEGLCQETNLQAAFEVFN----KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565
            +++GLC+   ++ A+ +F     K V+ DV+       T MI L R+  +  A +L R 
Sbjct: 434 IIIKGLCKADKVEDAWYLFCSLALKGVSPDVI----TYITMMIGLRRKRLWREAHELYRK 489

Query: 566 LSSDLG 571
           +  + G
Sbjct: 490 MQKEDG 495



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 311 RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
           RIC ++          F+   D    L   + SI    A+  F  M E   +P++   S 
Sbjct: 34  RICNSRA---------FSGRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSR 84

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L   + K NK + ++ +++ L       D+ S+  ++   C   RL  A   + +M + G
Sbjct: 85  LLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLG 144

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
            +P +  + SL+   C  +    A  L DQ+   G   N+  YN +I    E G++  AL
Sbjct: 145 FEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGL 515
            +  +M + G+ PD  TY SL+  L
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRL 229



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 171/413 (41%), Gaps = 66/413 (15%)

Query: 44  RDSLSPSLVARVIN----PYLLTHHSLALGF---------FNWASQQPNFTHSP--LSYH 88
           R SL+ S + +++     P ++T  SL  GF          +   Q     + P  + Y+
Sbjct: 129 RLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYN 188

Query: 89  SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           +I+ SL    Q+N    VLK +K   I  D   Y  +I  L        +  + +++   
Sbjct: 189 TIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMR- 247

Query: 149 CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
              I P++   ++L+ V   +G +  A K ++EM  R V  + + +   I   C      
Sbjct: 248 -MGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC------ 300

Query: 207 QVLSMLDEVRKRENSMIN-----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF 261
            +  +LDE +K  N +++      +V    +I+G+CK KRV++  K+L  +       D 
Sbjct: 301 -IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDT 359

Query: 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321
             Y  + + +   G     E VL +    GV P    +   + GL      C+  ++G+ 
Sbjct: 360 FTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGL------CDHGKIGKA 413

Query: 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381
           +V          L  L  S + +     I+ +N +I               K LCK +K 
Sbjct: 414 LVR---------LEDLQKSKTVV----GIITYNIII---------------KGLCKADKV 445

Query: 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDP 433
           ++   ++  L+      D+ +Y  M+  L      REA+ + ++M+++ GL P
Sbjct: 446 EDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 124/547 (22%), Positives = 228/547 (41%), Gaps = 89/547 (16%)

Query: 31  TPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSI 90
            P LE  L++ G+   L P L+ RV++       +L   FF WA++QP + HS     S+
Sbjct: 81  VPKLELALNESGI--DLRPGLIIRVLS-RCGDAGNLGYRFFLWATKQPGYFHSYEVCKSM 137

Query: 91  LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150
           +  LS  RQ  A+  ++++++                                  K N E
Sbjct: 138 VMILSKMRQFGAVWGLIEEMR----------------------------------KTNPE 163

Query: 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210
            I PE+   L+   AS   +  A+++ DEM   G+E     FG  +   C+N  + +   
Sbjct: 164 LIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASK 223

Query: 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270
           + +++R++    +        +++G+C+  ++ EA +VL +++    +PD + +  +   
Sbjct: 224 VFEDMREKFPPNLR---YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSG 280

Query: 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLI-VERRICEAKELGEVIVSGKFTI 329
           +   G + +   ++   RK G  P  N Y   I  L   E+R+ EA  +   +   ++  
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRV--FVEMERYGC 338

Query: 330 DDDVL--NALIGSVSS---IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
           + D++   ALI        ID   +++  + M +KG +P+  T   +     K+ + +E 
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVL--DDMRKKGVMPSQVTYMQIMVAHEKKEQFEEC 396

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY------ 438
           +E+ + +       D+  YNV++   C  G ++EA  +  EM+  GL P V  +      
Sbjct: 397 LELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMING 456

Query: 439 ----NSLMEAC---------------------------CREDLLRPAKKLWDQMF--ASG 465
                 L+EAC                            R+D L  AK +W  +    S 
Sbjct: 457 FTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSS 516

Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
           C  N+  + I I      G ++ A     +M+E  + P   TY  L++GL +  N   A 
Sbjct: 517 CELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAA 576

Query: 526 EVFNKSV 532
           E+  K V
Sbjct: 577 EITEKVV 583



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 161/340 (47%), Gaps = 8/340 (2%)

Query: 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263
           + G V  +++E+RK    +I   +  VL+   F     V++A +VLDE+     +PD   
Sbjct: 146 QFGAVWGLIEEMRKTNPELIEPELFVVLM-RRFASANMVKKAVEVLDEMPKYGLEPDEYV 204

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           +  + +     GSV E   V +  R+    P    +   + G   E ++ EAKE+  ++ 
Sbjct: 205 FGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLRYFTSLLYGWCREGKLMEAKEV--LVQ 261

Query: 324 SGKFTIDDDVL---NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380
             +  ++ D++   N L G   +     A    N M ++G  P ++  + L + LC+  K
Sbjct: 262 MKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK 321

Query: 381 S-DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439
             DE + V+  +       D+ +Y  ++S  C  G + + Y V+ +M++KG+ P    Y 
Sbjct: 322 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYM 381

Query: 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499
            +M A  +++      +L ++M   GC  +L  YN++I    ++GE++ A+RL++ M   
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441

Query: 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539
           G++P   T+  ++ G   +  L  A   F + V+  +  A
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 2/229 (0%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           + A+   + M + G  P       L   LCK     E  +V++ +    +  ++  +  +
Sbjct: 184 KKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR-EKFPPNLRYFTSL 242

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           +   C  G+L EA  V+ +MK  GL+PD+  + +L+        +  A  L + M   G 
Sbjct: 243 LYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGF 302

Query: 467 SGNLKTYNILISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
             N+  Y +LI       + ++ A+R+F  M   G   D  TYT+L+ G C+   +   +
Sbjct: 303 EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGY 362

Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574
            V +      VM ++      M++  ++  F    +L+  +     H D
Sbjct: 363 SVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG---LDPDVSFYNSLMEACCREDLLR 452
           YF   E    MV  L    +    +G+I+EM++     ++P++  +  LM      ++++
Sbjct: 127 YFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPEL--FVVLMRRFASANMVK 184

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A ++ D+M   G   +   +  L+    + G ++ A ++F +M EK   P+   +TSLL
Sbjct: 185 KAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK-FPPNLRYFTSLL 243

Query: 513 EGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTF 546
            G C+E  L  A EV        +  D+++  ++LS +
Sbjct: 244 YGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGY 281


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 190/456 (41%), Gaps = 47/456 (10%)

Query: 66  LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
           LAL  F++A +  P FTH+  +YH+I+  LS +R    ++S+L +++      DS +   
Sbjct: 67  LALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQ------DSGI--- 117

Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDN---ALKMFDEM 180
                                  NC ED+        + V+ S G       ALK F  +
Sbjct: 118 -----------------------NCSEDL-------FITVIRSYGLASRPKMALKTFLRI 147

Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
              GV  S       +    +N +   V  +L +  K +  ++       ++I   CK  
Sbjct: 148 QTFGVRRSVRSLNTLLNALVQNNRFSSV-HLLFKYSKSKFGVVPNVFTCNILIKALCKKN 206

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
            VE A KV DE+      P+ + Y  +   +   G +   + V  +    G  P    Y 
Sbjct: 207 DVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYT 266

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
             + G + + R  +A ++ + +       +D     +I G         A+   N M+EK
Sbjct: 267 ILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEK 326

Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
             +P  +    +   LC   +  E  ++++ L   +   D    + ++ +LC  G + EA
Sbjct: 327 KYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEA 386

Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
             +  E +R G    +  YN+L+   C    L  A +LWD M   GC  N  TYN+LI  
Sbjct: 387 RKLFNEFER-GTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKG 445

Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515
           F +VG+ +  +++   ML+KG   + +TY  L+EGL
Sbjct: 446 FLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGL 481



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 334 LNALIGSVSSIDPRSAI-VFFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391
           LN L+ ++   +  S++ + F +   K G VP + T + L K LCK+N  +   +V+  +
Sbjct: 159 LNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEM 218

Query: 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451
            +     ++ +Y  ++    + G +  A  V  E+   G  PD + Y  LM+   ++   
Sbjct: 219 PSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRF 278

Query: 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
             A K+ D+M  +G   N  TY ++I  + +  +   AL L ++MLEK   P++     +
Sbjct: 279 TDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKV 338

Query: 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL----RGLS 567
           ++ LC E  ++ A +++ K +  +     +I ST +  LC+ G+   A KL     RG  
Sbjct: 339 IDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTI 398

Query: 568 SDL 570
           S L
Sbjct: 399 SSL 401


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/443 (20%), Positives = 201/443 (45%), Gaps = 21/443 (4%)

Query: 81  THSPLS---YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137
           ++ PL+   Y+++++      + +    +L+++K   I+ D   Y  ++ +     + + 
Sbjct: 254 SNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIES 313

Query: 138 AFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
             ++  E++ +C    P +C  S+L  L + G +++ L  F E+S +G +   I +   I
Sbjct: 314 GMNLIQEME-HCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLI 372

Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
             F +   +    +++ E+RK  N ++   +I + +I  +C+   ++EA K    +    
Sbjct: 373 HGFLKGHNVKSANNLVHEMRK--NGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDG 430

Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
            +PD I    + +++   G   E  + + + +   + P +  Y   I  L   + + +A 
Sbjct: 431 LQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAW 490

Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSID--------PRSAIVFFNFMIEKGRVPTLSTL 368
           E+  V+        D++  ++I   + +D        P  A   +  M + G  P   TL
Sbjct: 491 EVLPVMFK------DNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTL 544

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L     KR K  + + ++K ++      D  ++  ++   C  G ++ A+ + ++MKR
Sbjct: 545 TVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKR 604

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
             + P+V  Y  L++  C+   L  A  L D M  +  + ++KTY  LI+ +  +  I+ 
Sbjct: 605 NNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDR 664

Query: 489 ALRLFHNMLEKGVAPDATTYTSL 511
           A  +F  M +KG  PD   Y +L
Sbjct: 665 AYEVFDEMKKKGTLPDHIAYLTL 687



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/522 (20%), Positives = 220/522 (42%), Gaps = 56/522 (10%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC 149
           ++K  + ++ +     V  Q K   + L+ S   F++  L +G   +   S+F+++K   
Sbjct: 121 LIKVFASNKMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLK--- 177

Query: 150 EDIGPEICNSLLAVLASDGY----------IDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199
            + GP   N     +  + Y          ++ A  + +EM  +G   + + +GV+I   
Sbjct: 178 -NSGPSP-NVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGL 235

Query: 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259
           C    +    + + ++R   N  +N      LI  GFC+  R +EA K+L+E++     P
Sbjct: 236 CRVGSIEDAWNKIQDLRS-SNQPLNIYCYNALI-QGFCQKGRPDEALKLLEEMKDEGISP 293

Query: 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP------------RT----ND----- 298
           D  +Y I+   F   G +     ++++       P            RT    ND     
Sbjct: 294 DIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFF 353

Query: 299 --------------YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI 344
                         Y   I G +    +  A  L   +       D  +  +LI      
Sbjct: 354 HELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRK 413

Query: 345 DP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
              + A+  F  M++ G  P + T +++    C R + +E +     +   +   +  +Y
Sbjct: 414 GCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTY 473

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK--KLWDQM 461
           +V++++LC    + +A+ V+  M +  + P V  Y ++M+   ++    P K  KL+ +M
Sbjct: 474 SVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQ-FKNPMKAWKLYRKM 532

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
              GC  +  T  +L+  FS+ G++  AL LF  M E+G++ D   +T++++G C+  N+
Sbjct: 533 PKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNV 592

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
           + A+ ++ K   ++V       +  +   C+     +AT L+
Sbjct: 593 KRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLI 634



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 177/420 (42%), Gaps = 51/420 (12%)

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI----CNSLLAVLASDGYIDNAL 174
           ++V   +I      K    A  VF + K     IG E+    CN LL  LA    ++   
Sbjct: 115 ATVLSLLIKVFASNKMLADAKDVFMQAK----KIGVELNISSCNFLLKCLAEGDKLEAVR 170

Query: 175 KMFDEMSHRGVEFSTIGFGVFIWKFC-----ENAKLGQVLSMLDEVRKR-ENSMINGSVI 228
            +FD++ + G   +   + + I  +C     +N  + Q   +L+E+ ++ EN  +   V 
Sbjct: 171 SLFDDLKNSGPSPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTV---VT 227

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
             + IHG C+   +E+A+  + +LR      +   Y  + + F   G   E   +L++ +
Sbjct: 228 YGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMK 287

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348
             G++P    Y                      I+   F  + D+              S
Sbjct: 288 DEGISPDIYSYS---------------------ILVNAFCTEGDI-------------ES 313

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
            +     M    + P L   +++   L  +   ++ +  +  LSA  Y  D+ SY+ ++ 
Sbjct: 314 GMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIH 373

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
                  ++ A  ++ EM++ GL PD   Y SL+   CR+  L+ A K +  M   G   
Sbjct: 374 GFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQP 433

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ T N ++ ++   G+ E AL   + M ++ + P++ TY+ ++  LC+   ++ A+EV 
Sbjct: 434 DIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVL 493



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430
           L +  C++ + DE +++ + +       D+ SY+++V+  CT G +     +IQEM+   
Sbjct: 266 LIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCN 325

Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
             P +    S++     + L+      + ++ A G   +L +Y+ LI  F +   ++ A 
Sbjct: 326 KKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSAN 385

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF----NKSVNHDVMLARSILSTF 546
            L H M + G+ PD   Y SL+   C++  L+ A + F       +  D++    I+  +
Sbjct: 386 NLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQY 445

Query: 547 MISLCRRGHFLVATKLLRGLSSD--LGHSDSHVILLKSLADAREVEMAIE 594
               C RG F  A   +  +     L +S ++ +++  L   + VE A E
Sbjct: 446 ----CSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWE 491



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 9/268 (3%)

Query: 43  LRDSLSPSLVA--RVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ 99
           L+D L P ++    +++ Y        AL + N    Q N   +  +Y  I+  L   + 
Sbjct: 427 LQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQ-NILPNSYTYSVIINWLCKYQA 485

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLI-QGKNTQKAFSVFNEV-KFNCEDIGPEIC 157
           +     VL  +  + I      Y  I+     Q KN  KA+ ++ ++ K  C+     + 
Sbjct: 486 VEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTL- 544

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
             L+ + +  G +  AL +F EM+  G+      F   I  +C    + +  SM  ++ K
Sbjct: 545 TVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKM-K 603

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R N   N      L+  GFCK KR++ A  ++D+++     PD   Y  +   ++ + ++
Sbjct: 604 RNNVTPNVKTYTCLV-DGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENI 662

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILG 305
                V  + +K G  P    Y    LG
Sbjct: 663 DRAYEVFDEMKKKGTLPDHIAYLTLGLG 690


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 199/443 (44%), Gaps = 37/443 (8%)

Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162
           +D  +  VK   +  ++  Y+ ++   ++ ++  KAF V+ ++      +     N LL 
Sbjct: 172 LDRCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLD 231

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            LA D  +D A K+F++M  R  E  T  + + I    +  K  + L++   + ++  ++
Sbjct: 232 ALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTL 291

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI-----VAE-EFKLMG 275
              ++IA   +I    KG+  ++A  +  ++    C+P+   Y +     VAE +   + 
Sbjct: 292 ---NLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLD 348

Query: 276 SVFEREVVLKKKRKLGVAPRT--------------------------NDYREFILGLIVE 309
           ++ E       K+      RT                          + Y   +  L   
Sbjct: 349 NIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSS 408

Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV-FFNFMIEKGRVPTLSTL 368
            +I EA +L         T D  + N +  ++  +   S I   +  M + G  P + T 
Sbjct: 409 GKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTY 468

Query: 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428
           + L  +  +  + D  V++++ L  ++   D+ SYN +++ L  +G + EA+   +EM+ 
Sbjct: 469 NILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQE 528

Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488
           KGL+PDV  Y++L+E   + D +  A  L+D+M A GCS NL TYNIL+      G    
Sbjct: 529 KGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAE 588

Query: 489 ALRLFHNMLEKGVAPDATTYTSL 511
           A+ L+  + ++G+ PD+ TY  L
Sbjct: 589 AVDLYAKLKQQGLTPDSITYAVL 611



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 149/352 (42%), Gaps = 67/352 (19%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++    K ++V++A+KV ++++ R C+PD   Y I+       G   E   + +   + 
Sbjct: 228 MLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEK 287

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL--NALIGSVSSIDPRS 348
           G          F L LI    + EA   G +        D  VL  + ++ +    +  +
Sbjct: 288 G----------FTLNLIAYNTMIEALAKGRMA-------DKAVLLFSKMVENGCQPNEFT 330

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS----ANDYFTDM---- 400
             V  N ++ +G++  L  +  +SK    +      V     L     A+  F +M    
Sbjct: 331 YSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVH 390

Query: 401 -----ESYNVMVSFLCTSGRLREA-----------------------------------Y 420
                ++Y  M+  LC+SG++ EA                                   +
Sbjct: 391 DKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIH 450

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            + ++MK+ G  PD+  YN L+ +  R   +  A K+++++  S C  ++ +YN LI+  
Sbjct: 451 DLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCL 510

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
            + G+++ A   F  M EKG+ PD  TY++L+E   +   ++ A  +F++ +
Sbjct: 511 GKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMI 562



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 37/241 (15%)

Query: 415 RLRE---AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471
           RLR+   A+GV  +M R G   D+  +N L++A  ++  +  A K+++ M    C  +  
Sbjct: 200 RLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTF 259

Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
           TY I+I    + G+ + +L LF  MLEKG   +   Y +++E L +      A  +F+K 
Sbjct: 260 TYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKM 319

Query: 532 VNH-------------DVMLA-------------------RSILSTFMISLCRRGHFLVA 559
           V +             +V++A                   + I + F+ +L + GH   A
Sbjct: 320 VENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEA 379

Query: 560 TKLLRGLSS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617
            +L   + +  D G  D+++ +L+SL  + ++  AI+ +    E   T    +   +F +
Sbjct: 380 HRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTA 439

Query: 618 L 618
           L
Sbjct: 440 L 440



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 97/215 (45%), Gaps = 4/215 (1%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y S+L+SL  S +I     +L +     IT D+ +Y  +  +L + K       ++ ++
Sbjct: 397 AYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKM 456

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
           K +         N L++     G +D+A+K+F+E+ +   +   I +   I    +N  +
Sbjct: 457 KQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDV 516

Query: 206 GQVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY 264
            +      E++++    +N  V+    +I  F K  +VE A  + DE+    C P+ + Y
Sbjct: 517 DEAHMRFKEMQEKG---LNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTY 573

Query: 265 RIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
            I+ +  +  G   E   +  K ++ G+ P +  Y
Sbjct: 574 NILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 608


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 203/468 (43%), Gaps = 43/468 (9%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSV 106
           L+PSLV  V+N   L   +L   F  +   + + +HS L+Y  +L+SL  S   +    V
Sbjct: 36  LTPSLVYEVVNR--LHIPNLGFKFVEFCRHKLHMSHSYLTYSLLLRSLCRSNLHHTAKVV 93

Query: 107 LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166
              ++ +    D+ +  F++ S         +  +  +V+ N   +   + N L  VL  
Sbjct: 94  YDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIR 153

Query: 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226
              + +A+ +F E+                                  +R R   +   +
Sbjct: 154 QNKVVDAVVLFREL----------------------------------IRLRYKPV---T 176

Query: 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286
               +++ G C+   ++EAF++L++LR   C PD I Y  +      +  V     +LK+
Sbjct: 177 YTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKE 236

Query: 287 KRKLG-VAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLNALIGSVSSI 344
               G  AP    Y   I G     ++ E   L GE+I SG    +    NALIG    +
Sbjct: 237 VCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGT-APNTFTFNALIGGFGKL 295

Query: 345 -DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
            D  SA+  +  M+ +G VP ++T ++L     +  +  + ++++  ++  +    + ++
Sbjct: 296 GDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTF 355

Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
           +V+VS LC + RL +A  +++ +    + P    YN +++  C+   +  A K+  +M  
Sbjct: 356 SVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEV 415

Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511
           + C  +  T+ ILI      G +  A+ +FH ML  G APD  T  +L
Sbjct: 416 NRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNL 463



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 4/241 (1%)

Query: 328 TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387
            + +D+ N LI     +D   A+V F  +I     P   T++ L + LC+  + DE   +
Sbjct: 142 VVYNDLFNVLIRQNKVVD---AVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFRL 198

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACC 446
              L +     D+ +YN ++  LC    +  A  +++E+   G   PDV  Y +++   C
Sbjct: 199 LNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYC 258

Query: 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
           +   +     L+ +M  SG + N  T+N LI  F ++G++  AL L+  ML +G  PD  
Sbjct: 259 KFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVA 318

Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           T+TSL+ G  +   +  A ++++K  + ++       S  +  LC       A  +LR L
Sbjct: 319 TFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLL 378

Query: 567 S 567
           +
Sbjct: 379 N 379



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 144/335 (42%), Gaps = 2/335 (0%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           L++   C+      A  V D +R     PD      +   + ++G +     +L   +  
Sbjct: 76  LLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADVQCN 135

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
            V      Y +    LI + ++ +A  L   ++  ++      +N L+ G   + +   A
Sbjct: 136 NVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEA 195

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVS 408
               N +   G +P + T + L   LC+ N+ D    + K +  N  F  D+ SY  ++S
Sbjct: 196 FRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIIS 255

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C   ++ E   +  EM R G  P+   +N+L+    +   +  A  L+++M   GC  
Sbjct: 256 GYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVP 315

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           ++ T+  LI+ +  +G++  A+ ++H M +K +     T++ L+ GLC    L  A ++ 
Sbjct: 316 DVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDIL 375

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
                 D++    I +  +   C+ G+   A K++
Sbjct: 376 RLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIV 410



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%)

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
           T S L ++LC+ N       VY  +  +    D      +V      GRL  +  ++ ++
Sbjct: 73  TYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADV 132

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
           +   +  +   YN L     R++ +  A  L+ ++          T NIL+      GEI
Sbjct: 133 QCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEI 192

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + A RL +++   G  PD  TY +L+ GLC+
Sbjct: 193 DEAFRLLNDLRSFGCLPDVITYNTLIHGLCR 223


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 141/589 (23%), Positives = 247/589 (41%), Gaps = 49/589 (8%)

Query: 10  ATRIS---QAIISASNRTRPARKWTPLLEQTLHQLGLRD-SLSPSLVARVINPYLLTHHS 65
           A RI    Q + S     R  R W   L   L    L+   +   L+  + +P       
Sbjct: 32  ACRIGEDKQFVDSVRRIVRGKRSWEIALSSELVSRRLKTIHVEEILIGTIDDP------K 85

Query: 66  LALGFFNWASQQPNFTHSPLSY----HSILKS-----------------LSLSRQINAID 104
           L L FFN+      F HS  S+    H+++++                 L  S   +A+ 
Sbjct: 86  LGLRFFNFLGLHRGFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKPSEVFDALF 145

Query: 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLA 162
           S  ++ K++     SS +  +I   ++ +       VF ++      + PE+   ++LL 
Sbjct: 146 SCYEKCKLSS----SSSFDLLIQHYVRSRRVLDGVLVF-KMMMTKVSLLPEVRTLSALLH 200

Query: 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222
            L    +   A+++FD+M + G+      +   I   CE   L +   M+ ++   E + 
Sbjct: 201 GLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQM---EATG 257

Query: 223 INGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281
            + +++   ++I G CK ++V EA  +  +L  +E KPD + Y  +      +  V E E
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCG---LCKVQEFE 314

Query: 282 VVLK---KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338
           V L+   +  +L  +P        + GL    ++ EA  L + +     + +  V NALI
Sbjct: 315 VGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALI 374

Query: 339 GSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
            S+    +   A + F+ M + G  P   T S L    C+R K D  +     +      
Sbjct: 375 DSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLK 434

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
             +  YN +++  C  G +  A  ++ EM  K L+P V  Y SLM   C +  +  A +L
Sbjct: 435 PSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
           + +M   G   ++ T+  L+S     G I  A++LF  M E  V P+  TY  ++EG C+
Sbjct: 495 YHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
           E N+  AFE  N+ +   ++         +  LC  G    A   + GL
Sbjct: 555 EGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 198/453 (43%), Gaps = 11/453 (2%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S   Y+S++        I+A +S++ ++   K+      Y  ++          KA  ++
Sbjct: 436 SVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495

Query: 143 NEVKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
           +E+    + I P I    +LL+ L   G I +A+K+F EM+   V+ + + + V I  +C
Sbjct: 496 HEM--TGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYC 553

Query: 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260
           E   + +    L+E+   E  ++  +     +IHG C   +  EA   +D L    C+ +
Sbjct: 554 EEGNMSKAFEFLNEMI--EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611

Query: 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER-RICEAKELG 319
            I Y  +   F   G + E   V +     GV      Y   I G +  + R      L 
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLK 671

Query: 320 EVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378
           E+   G    DD +  ++I + S   D + A   ++ MI +G VP   T + +   LCK 
Sbjct: 672 EMHDRG-LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSF 437
              +E   +   +   +   +  +Y   +  L    G +++A   +     KGL  + + 
Sbjct: 731 GFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVE-LHNAILKGLLANTAT 789

Query: 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497
           YN L+   CR+  +  A +L  +M   G S +  TY  +IS+     +++ A+ L+++M 
Sbjct: 790 YNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMT 849

Query: 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
           EKG+ PD   Y +L+ G C    +  A E+ N+
Sbjct: 850 EKGIRPDRVAYNTLIHGCCVAGEMGKATELRNE 882



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 109/534 (20%), Positives = 207/534 (38%), Gaps = 48/534 (8%)

Query: 71  FNWASQQPNFTHSP--LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128
            N   +   F  SP    Y++++ SL   R  +  + +  ++    +  +   Y  +I  
Sbjct: 352 LNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDM 411

Query: 129 LIQGKNTQKAFSVFNEVKFNCEDIG--PEIC--NSLLAVLASDGYIDNALKMFDEMSHRG 184
             +      A S   E+     D+G  P +   NSL+      G I  A  +  EM ++ 
Sbjct: 412 FCRRGKLDTALSFLGEMI----DMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKK 467

Query: 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244
           +E + + +   +  +C   K+ + L +  E+  +   ++        ++ G  +   + +
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK--GIVPSIYTFTTLLSGLFRAGLIRD 525

Query: 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304
           A K+  E+     KP+ + Y ++ E +   G++ +    L +  + G+ P T  YR  I 
Sbjct: 526 AVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIH 585

Query: 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP 363
           GL +  +  EAK   + +  G   +++     L+ G         A+     M  +G   
Sbjct: 586 GLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDL 645

Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
            L     L     K       + + K +       D   Y  M+     +G  +EA+G+ 
Sbjct: 646 DLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIW 705

Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM---------FASGC-------- 466
             M  +G  P+   Y +++   C+   +  A+ L  +M            GC        
Sbjct: 706 DLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKG 765

Query: 467 SGNLK------------------TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508
            G++K                  TYN+LI  F   G +E A  L   M+  GV+PD  TY
Sbjct: 766 VGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITY 825

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
           T+++  LC+  +++ A E++N      +   R   +T +   C  G    AT+L
Sbjct: 826 TTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATEL 879



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 196/523 (37%), Gaps = 89/523 (17%)

Query: 126 IPSLIQG-KNTQKAFSVFNEVKFNCE-DIGPEI--CNSLLAVLASDGYIDNALKMFDEMS 181
           + SL++G +   K     N VK   E  + P I   N+L+  L      D A  +FD M 
Sbjct: 335 VSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMG 394

Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL-----IIHGF 236
             G+  + + + + I  FC   KL   LS L E       MI+  +   +     +I+G 
Sbjct: 395 KIGLCPNDVTYSILIDMFCRRGKLDTALSFLGE-------MIDMGLKPSVYPYNSLINGH 447

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   +  A  ++ E+  ++ +P  + Y  +   +   G + +   +  +    G+ P  
Sbjct: 448 CKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSI 507

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNF 355
             +   + GL     I +A +L   +       +    N +I G     +   A  F N 
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNE 567

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           MIEKG VP   +   L   LC   ++ E       L   +   +   Y  ++   C  G+
Sbjct: 568 MIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627

Query: 416 LREA------------------YGVI-----------------QEMKRKGLDPDVSFYNS 440
           L EA                  YGV+                 +EM  +GL PD   Y S
Sbjct: 628 LEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTS 687

Query: 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE------------------ 482
           +++A  +    + A  +WD M   GC  N  TY  +I+   +                  
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGN 747

Query: 483 ------------------VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
                             VG+++ A+ L HN + KG+  +  TY  L+ G C++  ++ A
Sbjct: 748 SVPNQVTYGCFLDILTKGVGDMKKAVEL-HNAILKGLLANTATYNMLIRGFCRQGRMEEA 806

Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
            E+  + +   V       +T +  LCRR     A +L   ++
Sbjct: 807 SELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMT 849



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 182/432 (42%), Gaps = 9/432 (2%)

Query: 87  YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           Y  +++SL   + ++    ++ Q++     ++   Y  +I  L + +   +A  +  ++ 
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 147 FNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204
              +++ P++    +L+  L      +  L+M DEM       S       +    +  K
Sbjct: 290 G--KELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGK 347

Query: 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL-RIRECKPDFIA 263
           + + L+++  V   E  +     +   +I   CKG+  +EA  + D + +I  C P+ + 
Sbjct: 348 VEEALNLVKRVA--EFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLC-PNDVT 404

Query: 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323
           Y I+ + F   G +      L +   +G+ P    Y   I G      I  A+ L   ++
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMI 464

Query: 324 SGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
           + K         +L+G   S      A+  ++ M  KG VP++ T + L   L +     
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIR 524

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           + V+++  ++  +   +  +YNVM+   C  G + +A+  + EM  KG+ PD   Y  L+
Sbjct: 525 DAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLI 584

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
              C       AK   D +    C  N   Y  L+  F   G++E AL +  +M  +GV 
Sbjct: 585 HGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVD 644

Query: 503 PDATTYTSLLEG 514
            D   Y  L++G
Sbjct: 645 LDLVCYGVLIDG 656



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 177/448 (39%), Gaps = 51/448 (11%)

Query: 47  LSPSLVARVINPYLLTHHSLALGFFNWA---------SQQPNFTHSP--LSYHSILKSLS 95
           L   +  + I P + T  +L  G F            ++   +   P  ++Y+ +++   
Sbjct: 494 LYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYC 553

Query: 96  LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL-IQGKNTQKAFSVFNEVKFNCEDIGP 154
               ++     L ++    I  D+  YR +I  L + G+ ++    V    K NCE    
Sbjct: 554 EEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL--N 611

Query: 155 EIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           EIC   LL     +G ++ AL +  +M  RGV+   + +GV I    ++      L +L 
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLK 671

Query: 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273
           E+  R   +    VI   +I    K    +EAF + D +    C P+ + Y  V      
Sbjct: 672 EMHDR--GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729

Query: 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
            G V E E++  K R     P    Y  F+                            D+
Sbjct: 730 AGFVNEAEILCSKMRPGNSVPNQVTYGCFL----------------------------DI 761

Query: 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           L   +G     D + A+   N ++ KG +   +T + L +  C++ + +E  E+   +  
Sbjct: 762 LTKGVG-----DMKKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRMEEASELITRMIG 815

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
           +    D  +Y  M+S LC    +++A  +   M  KG+ PD   YN+L+  CC    +  
Sbjct: 816 DGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFS 481
           A +L ++M   G   N +T    IS  S
Sbjct: 876 ATELRNEMLRQGLKPNTETSETTISNDS 903


>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 823

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 127/657 (19%), Positives = 270/657 (41%), Gaps = 29/657 (4%)

Query: 2   TMRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLR-DSLSPSLVARVINPYL 60
           + R    +  RI + +    +  +  + W+ +L+       +R   +SP +  R+ +   
Sbjct: 20  SFRSHFPITPRIKKLVSDTVSILKTQQNWSQILDDCFADEEVRFVDISPFVFDRIQDV-- 77

Query: 61  LTHHSLALGFFNWAS--QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118
                + +  F+W S  ++  F  +  +  S LK L+  R  N I+ VL  ++   + L 
Sbjct: 78  ----EIGVKLFDWLSSEKKDEFFSNGFACSSFLKLLARHRIFNEIEDVLGNLRNENVKLT 133

Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKM 176
                 ++ +  +     KA  +++ V     D  P++  CN+LL+++     +++A K+
Sbjct: 134 HEALSHVLHAYAESGFLSKAVEIYDYV-VELYDSVPDVIACNALLSLVVKSRRLEDARKV 192

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
           +DEM  RG         + +   C   K+ +   ++++  +     +   V    II G+
Sbjct: 193 YDEMCERGGCVDNYSTCIMVKGMCSEGKVEEGRKLIED--RWGKGCVPNIVFYNTIIGGY 250

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   +E A  V  EL+++   P    +  +   F   G     + +L++ ++ G+    
Sbjct: 251 CKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVCV 310

Query: 297 NDYREFILGLIVERRI-----CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AI 350
                + L  I++ +       +  E    IV+     D    N LI  +     +  A 
Sbjct: 311 -----WFLNNIIDAKYRHGFKVDPAESIRWIVANDCKPDIATYNILINRLCKEGKKEVAA 365

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              +   +KG + T  + + L +  CK  + D   ++   L+      D+ +Y +++  L
Sbjct: 366 GLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGL 425

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
             SG + +A  +  ++  +G+ PD + YN LM   C+     PAK L+ +M       + 
Sbjct: 426 VVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDA 485

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
             Y  LI  F   G+ + A ++F   +EKGV  D   + ++++G C+   L  A    N+
Sbjct: 486 YVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNR 545

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADARE 588
                ++  +   ST +    ++     A K+ R +  +    +  ++  L+       +
Sbjct: 546 MNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGD 605

Query: 589 VEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643
             +A E  K +Q     P ++   +     +  SS+  + +      +  KC+ +E+
Sbjct: 606 FSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEV 662



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 151/415 (36%), Gaps = 88/415 (21%)

Query: 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251
           + + I + C+  K      +LDE  K+   + N S     +I  +CK K  + A K+L +
Sbjct: 348 YNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAP--LIQAYCKSKEYDIASKLLLQ 405

Query: 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311
           L  R CKPD + Y I+     + G + +   +  K    GV+P    Y   + GL    R
Sbjct: 406 LAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGR 465

Query: 312 ICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370
              AK L   ++      D  V   LI G + S D   A   F   +EKG    +   + 
Sbjct: 466 FLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNA 525

Query: 371 LSKNLCKRNKSDE--------------------------LVEVYKVLSANDYFTDME--- 401
           + K  C+    DE                           V+   + +A   F DME   
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNK 585

Query: 402 ------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPA 454
                 +Y  +++  C  G    A    +EM+ + L P+V  Y +L+ +  +E   L  A
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKA 645

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSE------VGEIEGA--------LRLFHNM---- 496
              W+ M  + C  N  T+N L+  F +      +GE +G            FH M    
Sbjct: 646 VYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGRFLGEPDGFNHGQSFLFFEFFHRMKSDG 705

Query: 497 -------------------------------LEKGVAPDATTYTSLLEGLCQETN 520
                                          ++KG +PD  ++ ++L G C   N
Sbjct: 706 WSDHGAAYNSVLVCLCVHGMVKTACMLQDRMVKKGFSPDPVSFAAILHGFCVVGN 760



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/432 (19%), Positives = 163/432 (37%), Gaps = 62/432 (14%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKV--NKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           ++Y  ++  L +S  ++  D+V  +VK+    ++ D+++Y  ++  L +      A  +F
Sbjct: 416 VTYGILIHGLVVSGHMD--DAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLF 473

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +E+          +  +L+      G  D A K+F     +GV+   +     I  FC +
Sbjct: 474 SEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCRS 533

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
             L + L+ ++  R  E  ++        II G+ K + +  A K+  ++   +CKP+ +
Sbjct: 534 GMLDEALACMN--RMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVV 591

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  +   F   G     E   K+ +   + P    Y   I     E    E        
Sbjct: 592 TYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLE-------- 643

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                                     A+ ++  M+    VP   T + L +   K+    
Sbjct: 644 -------------------------KAVYYWELMMTNKCVPNEVTFNCLLQGFVKK---- 674

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
                    ++  +  + + +N   SFL         +     MK  G     + YNS++
Sbjct: 675 ---------TSGRFLGEPDGFNHGQSFL--------FFEFFHRMKSDGWSDHGAAYNSVL 717

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL-FHNMLEKGV 501
              C   +++ A  L D+M   G S +  ++  ++  F  VG  +    + F N+ EKG+
Sbjct: 718 VCLCVHGMVKTACMLQDRMVKKGFSPDPVSFAAILHGFCVVGNSKQWRNMDFRNLDEKGL 777

Query: 502 APDATTYTSLLE 513
              A  Y+ +LE
Sbjct: 778 EV-AVRYSRVLE 788


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 121/530 (22%), Positives = 208/530 (39%), Gaps = 55/530 (10%)

Query: 88  HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147
           HS L+S      I+  D ++++   +K+  D   Y  +I    +    +  F+VF  +  
Sbjct: 168 HSTLES---QLGISLFDRMVRECS-DKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILK 223

Query: 148 NCEDIGPEICNSLLAVLASDGYIDNALK-MFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
               +   + N LL  L     +D A   +   M   G   + + +   +  FC   +  
Sbjct: 224 TGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAE 283

Query: 207 QVLSMLDEVRKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           + L +L  +   +       V++   +I+GF +  +V++A+ +  ++  R   PD + Y 
Sbjct: 284 EALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYN 343

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE----- 320
            V +       V   + V ++    GV P    Y   I G +   +  E   L E     
Sbjct: 344 TVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTH 403

Query: 321 ---------------VIVSGKFT----IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
                          +  +G+ T    I D V+   I   + ID   A+  F+ M ++G 
Sbjct: 404 DLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMID--EAVCIFDKMRQQGL 461

Query: 362 VPTLSTLSNLSKNLCKRNKSDELV--------EVYKVLSANDYFT--------------- 398
            P +     L   LCK  + D+ +        EVY + +   +                 
Sbjct: 462 SPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRL 521

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           D+  +N ++  LC  GR+ EA  +I+ M R G+ PDV  YN+L++  C       A KL 
Sbjct: 522 DVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLL 581

Query: 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
           D M + G   N  TYN L+  + +   I+ A  L   ML  G  PD  TY ++L GL Q 
Sbjct: 582 DVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQT 641

Query: 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
                A E++   +N          +  +  LC+      A K+ + L S
Sbjct: 642 GRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCS 691



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 204/462 (44%), Gaps = 40/462 (8%)

Query: 76  QQPNFTHSP--LSYHSILKSL-SLSRQINAID--SVLKQVKVNKITLDSSVYRFIIPSLI 130
           + P F  +P  +SY++++K   + +R   A++   V+   +      D   Y  +I    
Sbjct: 256 RMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFF 315

Query: 131 QGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188
           +     KA+++F  ++     I P++   N+++  L     +D A  +F +M  +GV+ S
Sbjct: 316 REGQVDKAYNLF--LQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPS 373

Query: 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248
              +   I  +    K  +V+ +L+E+   +  +     I  L++   CK  R  EA  +
Sbjct: 374 NGTYNCLIHGYLSTGKWKEVVRLLEEMSTHD--LEPDCFIYALLLDYLCKNGRCTEARNI 431

Query: 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308
            D +  +  KPD +              + E   +  K R+ G++P   +Y   I  L  
Sbjct: 432 FDSVIRKGIKPDAM--------------IDEAVCIFDKMRQQGLSPNVVNYGALIDAL-- 475

Query: 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIG--SVSSIDPRSAIVFFNFMIEKGRVPTLS 366
               C+   + + I+  KF   + ++N + G  +V   +    +VF   M+++G    + 
Sbjct: 476 ----CKLGRVDDAIL--KF---NQMINEVYGLCTVEKWEKAEELVFE--MLDQGIRLDVV 524

Query: 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
             + L  +LC+  +  E   + +++       D+ SYN +V   C +GR  EA  ++  M
Sbjct: 525 VFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVM 584

Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
              GL P+   YN+L+   C+   +  A  L  +M  +G + ++ TYN ++    + G  
Sbjct: 585 VSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRF 644

Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
             A  L+ NM+      D  TY  +L GLC+   +  AF++F
Sbjct: 645 SEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMF 686



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 209/472 (44%), Gaps = 30/472 (6%)

Query: 86  SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
           +Y+ ++     + +   +  +L+++  + +  D  +Y  ++  L +     +A ++F+ V
Sbjct: 376 TYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSV 435

Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
                         +   +  D  ID A+ +FD+M  +G+  + + +G  I   C   KL
Sbjct: 436 --------------IRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALC---KL 478

Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
           G+V    D+   + N MIN        ++G C  ++ E+A +++ E+  +  + D + + 
Sbjct: 479 GRV----DDAILKFNQMINE-------VYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFN 527

Query: 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325
            +  +    G V E + +++   ++GV P    Y   + G  +  R  EA +L +V+VS 
Sbjct: 528 TLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSI 587

Query: 326 KFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDEL 384
               ++   N L+ G   +     A      M+  G  P + T + +   L +  +  E 
Sbjct: 588 GLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEA 647

Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
            E+Y  +  +    DM +YN++++ LC +  + EA+ + Q +  KGL   +  +N ++ A
Sbjct: 648 KELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGA 707

Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
             +      A  L+  + A G   +++TY ++     + G +E    LF  M E G AP+
Sbjct: 708 LLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPN 767

Query: 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
           +    +L+       ++  A    +K    +  L  S  ++ +ISL  RG +
Sbjct: 768 SRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEAST-ASMLISLYSRGEY 818


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 200/451 (44%), Gaps = 19/451 (4%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN LL  L S G   +    F  +   G    T  +   +        L + L+ML  + 
Sbjct: 126 CNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMG 185

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           + E +    +    ++I G  +  +  +A KV DE+  R   P+ I Y  + +   + G 
Sbjct: 186 RSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDG-HVKGG 244

Query: 277 VFE-----REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331
             E     R+ +L+  RK    P    Y   + GL    R+ E + L + + S     D 
Sbjct: 245 DLEAGFRLRDQMLQDGRK----PNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDG 300

Query: 332 DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390
              + L  G   + D R+ +  F   ++KG +    T S L   LCK  K  +  +V ++
Sbjct: 301 FTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEM 360

Query: 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450
           L           YN +++  C    L+ A+ + ++MK + + PD   YN+L+   C+ ++
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM 420

Query: 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510
           +  A+ L  +M  SG   +++T+N LI  +   G++E    +  +M +KG+  +  ++ S
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGS 480

Query: 511 LLEGLCQETNLQAAFEVFNKSVNHDVM----LARSILSTFMISLCRRGHFLVATKLL-RG 565
           +++  C+   +  A  + +  ++ DV+    +  SI+  ++ S      FL+  K+   G
Sbjct: 481 VVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSG 540

Query: 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
           +S+ +    ++ +LLK L    +++ A E I
Sbjct: 541 VSASIF---TYNLLLKGLCKNSQIDEAEELI 568



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 185/414 (44%), Gaps = 15/414 (3%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N ++A L   G   +ALK+FDEM  RGV  + I +   I    +   L     + D++ +
Sbjct: 199 NVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQ 258

Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
             R+ +++  +V+    + G C+  R++E   ++DE+      PD   Y I+ +     G
Sbjct: 259 DGRKPNVVTYNVL----LSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG 314

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
                  +  +  K GV          + GL  + ++ +A+++ E++V         + N
Sbjct: 315 DSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYN 374

Query: 336 ALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394
            LI     + D + A   F  M  +   P   T + L   LCK     E  ++   +  +
Sbjct: 375 TLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKS 434

Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
                +E++N ++     +G+L + + V+ +M+ KG+  +V  + S+++A C+   +  A
Sbjct: 435 GVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEA 494

Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
             + D M       N + YN +I  + E G  E A  L   M   GV+    TY  LL+G
Sbjct: 495 VAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKG 554

Query: 515 LCQETNLQAAFEVF----NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564
           LC+ + +  A E+     N+ +  DV+   +I+S    + C +G    A +LL+
Sbjct: 555 LCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIIS----ACCNKGDTDRALELLQ 604



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/488 (19%), Positives = 199/488 (40%), Gaps = 75/488 (15%)

Query: 51  LVARVINPYLLTHHSLALGFFNWASQQPNF---------THSP--LSYHSILKSLSLSRQ 99
           +V R + P  +T++++  G       +  F            P  ++Y+ +L  L  + +
Sbjct: 221 MVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGR 280

Query: 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159
           ++   +++ ++    +  D   Y  +   L +  +++   S+F E       IG   C+ 
Sbjct: 281 MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSI 340

Query: 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219
           LL  L  DG +  A ++ + + H G+  +T  +                           
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIY--------------------------- 373

Query: 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279
           N++ING          +C+ + ++ AF + ++++ R  +PD I Y  +      M  + E
Sbjct: 374 NTLING----------YCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITE 423

Query: 280 REVVLKKKRKLGVAPRTNDYREFI--LGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E ++ +  K GV P    +   I   G   +   C             FT+  D+ +  
Sbjct: 424 AEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKC-------------FTVLSDMQDKG 470

Query: 338 I-------GSVSSIDPRS-----AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
           I       GSV     ++     A+   + MI K  VP     +++     +   +++  
Sbjct: 471 IKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAF 530

Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
            + + + ++     + +YN+++  LC + ++ EA  +I  +  +GL PDV  YN+++ AC
Sbjct: 531 LLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISAC 590

Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
           C +     A +L  +M        L+TY+ L+S     G +     L+ +M+ K V P +
Sbjct: 591 CNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSS 650

Query: 506 TTYTSLLE 513
           + Y +  E
Sbjct: 651 SIYGTRCE 658



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 400 MESYNVMVSFLCTSGR---LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
           + S N+++  L + GR   +R A+G++      G  PD   +N  ++AC     L  A  
Sbjct: 123 LSSCNLLLESLLSVGRHADVRAAFGLLVA---AGARPDTFAWNKAVQACVAAGDLDEALA 179

Query: 457 LWDQMFAS--GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
           +  +M  S      +  +YN++I+     G+   AL++F  M+++GVAP+  TY ++++G
Sbjct: 180 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDG 239

Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568
             +  +L+A F + ++ +           +  +  LCR G       L+  ++S
Sbjct: 240 HVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTS 293


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 181/437 (41%), Gaps = 39/437 (8%)

Query: 157 CNSLLAVLA---SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213
           CN+LL  L    S   I +A ++FD+M   GV  +   F V +  +C   KL   L ML+
Sbjct: 169 CNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLE 228

Query: 214 E----------------------------------VRKRENSMINGSVIAVLIIHGFCKG 239
                                              +  ++N ++   V    +++G+CK 
Sbjct: 229 RMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKL 288

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             ++EAF++++ ++     PD   Y I+       GS+ E   ++   + L + P    Y
Sbjct: 289 GSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTY 348

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV--FFNFMI 357
              I G        EA++L E + +     +    N  +  +   + R A+       + 
Sbjct: 349 NTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVD 408

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G  P + T   L K   K       +E+ + +       +  + N ++  LC   +L 
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLD 468

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477
           EA+ ++    ++G   D   Y +L+    RE+ +  A ++WD+M     +  + T+N LI
Sbjct: 469 EAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI 528

Query: 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
                 G+ E A+  F  + E G+ PD +T+ S++ G C+E  ++ AFE +N+S+ H   
Sbjct: 529 GGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFK 588

Query: 538 LARSILSTFMISLCRRG 554
                 +  +  LC+ G
Sbjct: 589 PDNYTCNILLNGLCKEG 605



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 148/375 (39%), Gaps = 64/375 (17%)

Query: 57  NPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
           +P ++T+H+L   +                 Q     + ++ ++IL +L   R+++   +
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHN 472

Query: 106 VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAV 163
           +L         +D   Y  +I    + +  +KA  +++E+K     I P +   NSL+  
Sbjct: 473 LLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMK--KVKITPTVSTFNSLIGG 530

Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
           L   G  + A++ FDE++  G+      F   I  +C+  ++ +     +E  K  +S  
Sbjct: 531 LCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIK--HSFK 588

Query: 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283
             +    ++++G CK    E+A    + L I E + D + Y  +   F     + E   +
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTL-IEEREVDTVTYNTMISAFCKDKKLKEAYDL 647

Query: 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343
           L +  + G+ P    Y  FI  L+ + ++ E  EL +   SGKF           GS+  
Sbjct: 648 LSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKF-SGKF-----------GSMKR 695

Query: 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
                     +  +E  + P  S                         S  +  T+  +Y
Sbjct: 696 ----------DLQVETEKNPATSE------------------------SKEELNTEAIAY 721

Query: 404 NVMVSFLCTSGRLRE 418
           + ++  LC+ GRL+E
Sbjct: 722 SDVIDELCSRGRLKE 736


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 183/417 (43%), Gaps = 19/417 (4%)

Query: 190 IGFGV-------FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           +GFG+        +   C    LG+   + +++ K EN   N SV   ++IHG C+  R+
Sbjct: 223 LGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPN-SVTYSILIHGLCEAGRL 281

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           EEAF++  E+  + C+P    Y ++ +    +G   +   +L +       P  + Y   
Sbjct: 282 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 341

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           I  L  E +I EA  +   ++           NALI G        SA    + M EKG 
Sbjct: 342 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM-EKGN 400

Query: 362 V-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + L + LC+ +KS +   + + +  N    D  +YN++V   C  G+L  A+
Sbjct: 401 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 460

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +   M   GL+PD   + +L++  C+   L  A  +   M   G S +  T+  LI   
Sbjct: 461 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 520

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            ++G+ +    LF NM+E      A T+   L+ L ++  L  A  +  K + + ++ + 
Sbjct: 521 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 580

Query: 541 SILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMA 592
              +  +   CR G   ++ K+L      G S ++    ++ I++  L +   VE A
Sbjct: 581 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNV---YTYTIIINGLCNNGRVEEA 634



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 193/438 (44%), Gaps = 9/438 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           +S  Y  +I  L +    ++AF +  E V+  C+         L+      G  D A+KM
Sbjct: 264 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP-STRTYTVLIKAKCDIGMTDKAMKM 322

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
            DEM+ +    +   + + I + C   K+ +   +  ++ K  + +  G +    +I+G+
Sbjct: 323 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK--HGLCPGIITFNALINGY 380

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   V  AF++L  +    CKP+   Y  + E    +   ++  ++L++    G+ P  
Sbjct: 381 CKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDR 440

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNF 355
             Y   + G   E ++  A  +   + S     D     ALI  +  +     A      
Sbjct: 441 VTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGS 500

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M++KG      T + L    CK  K+ ++  +++ +  N   T   ++N  +  L    +
Sbjct: 501 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 560

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  ++ +M + GL P V  +  L+E  CR      + K+ ++M  +GCS N+ TY I
Sbjct: 561 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 620

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I+     G +E A  +  +M   GV+P+  TY  L++   +   L  AF++ +  V + 
Sbjct: 621 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 680

Query: 536 VM----LARSILSTFMIS 549
                 +  ++LS F++S
Sbjct: 681 CQPNSHIYSALLSGFVLS 698



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 1/210 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E G   +    S L   L K N       VY+ +    +      Y  +V+ LC +G 
Sbjct: 150 MTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 209

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSGNLKTYN 474
           ++ A     ++ R G   D     SL+ A CR D L  A +++++M     C  N  TY+
Sbjct: 210 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 269

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ILI    E G +E A +L   M+EKG  P   TYT L++  C       A ++ ++    
Sbjct: 270 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR 564
             +      +  +  LCR G    A  + R
Sbjct: 330 ACVPNVHTYTILIDRLCREGKIEEANGVFR 359



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/525 (19%), Positives = 200/525 (38%), Gaps = 78/525 (14%)

Query: 43  LRDSLSPSLVA--RVINPYLLTHHSLALGFFNWAS--QQPNFTHSPLSYHSILKSLSLSR 98
           L+  L P ++    +IN Y        +  F   S  ++ N   +  +Y+ +++ L    
Sbjct: 362 LKHGLCPGIITFNALINGY--CKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 419

Query: 99  QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--I 156
           +      +L++V  N +  D   Y  ++    +      AF++FN +  N   + P+   
Sbjct: 420 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM--NSAGLEPDGFT 477

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE--------------- 201
             +L+  L   G ++ A  +   M  +G+    + F   I   C+               
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537

Query: 202 --------------------NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
                               + KL +  +ML ++ K    ++   V   ++I G C+   
Sbjct: 538 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY--GLVPSVVTHTILIEGHCRAGE 595

Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
              + K+L+ ++   C P+   Y I+       G V E E +L      GV+P    Y  
Sbjct: 596 TALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAV 655

Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG----SVSSIDPRSAIVFFNFMI 357
            +   +   R+  A ++   +V      +  + +AL+     S ++I  R+       + 
Sbjct: 656 LVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARA-------LS 708

Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417
             G +   S  S  + N C  N      E+ K     +     + YN +V  LC  GR+ 
Sbjct: 709 STGDLDARSLSSEENDNNCLSN------EIKKCGVPTE-----DLYNFLVVGLCKEGRII 757

Query: 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTY 473
           EA  + Q+M + GL PD +  +S++E  C+    ++ L   K + D  F      +  +Y
Sbjct: 758 EADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVP----SFASY 812

Query: 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
             +I      G ++ A +L  +++      +    T  +E L +E
Sbjct: 813 CWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKE 857


>gi|226493958|ref|NP_001147934.1| fertility restorer [Zea mays]
 gi|195614680|gb|ACG29170.1| fertility restorer [Zea mays]
          Length = 563

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 181/404 (44%), Gaps = 20/404 (4%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI----WKFCE-NAKLGQVLSML 212
           N+LL  L   G    A  +FD M   GV  +   F + +    W+  + +    Q+ +M 
Sbjct: 99  NTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHLAYDQIHAM- 157

Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
               +R   + +    + L+  G C+  +++EA+ VLD +    C+P    Y  + + + 
Sbjct: 158 ----RRHGLLPDVGTFSTLVT-GLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYC 212

Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIVSGK--FTI 329
             G + E   ++    + G  P    Y   I  L  + R  E ++ L E+   G    T+
Sbjct: 213 RQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHELSTV 272

Query: 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
             ++    +G       + A+  F  +  KG  PT  TLS +   LC  ++  + + + +
Sbjct: 273 TYNIYMDALGKKGMA--KEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILE 330

Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
             +  ++   + +YN ++S LC  GR      ++ +M +K + P+    N  + + C  D
Sbjct: 331 RSTDLNFCAAVVAYNTVMSRLCDMGRWPAVLELLADMIKKCIVPNTRTLNIFIHSLCIAD 390

Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-KGVAPDATTY 508
            L  AKKL   ++  G   N  TYN LI  F   GE   A  +F  M E   +APD  TY
Sbjct: 391 KLSVAKKL---VYNQGFPANAVTYNTLIHSFYLRGEAYEADNMFAYMTEVANIAPDEVTY 447

Query: 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
           T +++GLC++     A + F +S+ + + L++ +L+  +  L R
Sbjct: 448 TIMVDGLCRQGKFDKATDFFKESLRNRLRLSKDLLTALLNGLAR 491



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 2/275 (0%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG--SVSSIDPRS 348
           GV P    Y   +  L+   R  EA+ + + +++     +    N L+   +  + D   
Sbjct: 90  GVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHL 149

Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408
           A    + M   G +P + T S L   LC+  K DE   V   +        + +Y  +V 
Sbjct: 150 AYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQ 209

Query: 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468
             C  G++ EA  +I  M+  G  P+   YN L+ A C +      +++  ++   G   
Sbjct: 210 GYCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHEL 269

Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528
           +  TYNI +    + G  + AL+ F  +  KG+ P A T + +L  LC  +    A  + 
Sbjct: 270 STVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISIL 329

Query: 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            +S + +   A    +T M  LC  G +    +LL
Sbjct: 330 ERSTDLNFCAAVVAYNTVMSRLCDMGRWPAVLELL 364



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/333 (17%), Positives = 125/333 (37%), Gaps = 35/333 (10%)

Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV-VLKKKRKL 290
           +++   +  R  EA  V D +      P+  ++ I+ + +    + F      +   R+ 
Sbjct: 101 LLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHLAYDQIHAMRRH 160

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G+ P    +   + GL      C A +L E                            A 
Sbjct: 161 GLLPDVGTFSTLVTGL------CRAGKLDE----------------------------AW 186

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
              ++M+++G  P + T + + +  C++ + +E   +   +       +  +YNV++  L
Sbjct: 187 GVLDWMLQEGCRPMVHTYTPIVQGYCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRAL 246

Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
           C   R  E   V+ E++ KG +     YN  M+A  ++ + + A K ++ +   G     
Sbjct: 247 CDDARFAEVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTA 306

Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
            T +I+++          A+ +     +         Y +++  LC      A  E+   
Sbjct: 307 FTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVMSRLCDMGRWPAVLELLAD 366

Query: 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563
            +   ++     L+ F+ SLC      VA KL+
Sbjct: 367 MIKKCIVPNTRTLNIFIHSLCIADKLSVAKKLV 399



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 7/276 (2%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N L+  L  D       ++  E+  +G E ST+ + +++    +     + L   + ++ 
Sbjct: 240 NVLIRALCDDARFAEVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEALQC 299

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           +   +   +    +I++  C   R  +A  +L+           +AY  V      MG  
Sbjct: 300 K--GLHPTAFTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVMSRLCDMGRW 357

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
                +L    K  + P T     FI  L +  ++  AK+L   + +  F  +    N L
Sbjct: 358 PAVLELLADMIKKCIVPNTRTLNIFIHSLCIADKLSVAKKL---VYNQGFPANAVTYNTL 414

Query: 338 IGSVS-SIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395
           I S     +   A   F +M E   + P   T + +   LC++ K D+  + +K    N 
Sbjct: 415 IHSFYLRGEAYEADNMFAYMTEVANIAPDEVTYTIMVDGLCRQGKFDKATDFFKESLRNR 474

Query: 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
                +    +++ L  S R      V QE++R+G 
Sbjct: 475 LRLSKDLLTALLNGLARSDRNTNILVVFQEIERQGF 510



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NL 521
           ++G   ++  YN L++   E G    A  +F  ML  GVAP+A+++  L++     T + 
Sbjct: 88  SAGVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADF 147

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
             A++  +    H ++      ST +  LCR G
Sbjct: 148 HLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAG 180



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 53/283 (18%), Positives = 102/283 (36%), Gaps = 5/283 (1%)

Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
           G I+ A  +   M   G   + + + V I   C++A+  +V  +L E+  + + +   +V
Sbjct: 215 GQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHEL--STV 272

Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
              + +    K    +EA K  + L+ +   P      I+           +   +L++ 
Sbjct: 273 TYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILERS 332

Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
             L        Y   +  L    R     EL   ++      +   LN  I S+   D  
Sbjct: 333 TDLNFCAAVVAYNTVMSRLCDMGRWPAVLELLADMIKKCIVPNTRTLNIFIHSLCIADKL 392

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS-ANDYFTDMESYNVM 406
           S  V    +  +G      T + L  +   R ++ E   ++  ++   +   D  +Y +M
Sbjct: 393 S--VAKKLVYNQGFPANAVTYNTLIHSFYLRGEAYEADNMFAYMTEVANIAPDEVTYTIM 450

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
           V  LC  G+  +A    +E  R  L        +L+    R D
Sbjct: 451 VDGLCRQGKFDKATDFFKESLRNRLRLSKDLLTALLNGLARSD 493


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 139/562 (24%), Positives = 238/562 (42%), Gaps = 75/562 (13%)

Query: 33  LLEQTLHQLGLRDSLSPSLVARVI-----NPYLLTHHSLALGFFNWASQQPNFTHSPLSY 87
           +L+  L       SL  +  +RV+     +P L T   L   FF++  Q P+     L  
Sbjct: 10  ILKSGLQPFKTTPSLLSNFDSRVMQLVLSDPNLPTRSCLR--FFDFLRQNPS-RKPDLPA 66

Query: 88  HSILKS-LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
           H IL S L  +R+   + +VLK + VN   L S+V R +  S I G+             
Sbjct: 67  HLILFSRLYRARKFAEMKNVLKFI-VNDGNLWSNVERIV--SSIGGE------------- 110

Query: 147 FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
           FN   I  + C+ L  V   +   D++L++FD    +G E        F+     +  + 
Sbjct: 111 FNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNME 170

Query: 207 QVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
             +  L   R+  +S I   V +   ++ G CK   V  A  ++DEL  +  KP  I Y 
Sbjct: 171 LCVEFL---RQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYN 227

Query: 266 IVAE---EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            +     E K +G V E   +L    K  V      Y   I       +I EA++L + +
Sbjct: 228 TLLNGYIEIKDVGGVNE---ILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEM 284

Query: 323 VSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGRVPTLST-------------- 367
           +      D  +  ++I  +    + + A V F+ M E+  VP   T              
Sbjct: 285 LKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEM 344

Query: 368 ---------------------LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
                                 + L    CK+   DE + +  ++    +  D  + N++
Sbjct: 345 KAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNII 404

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
            S  C S R  EA  ++  M+ +G+ P+V  ++ L++  C+E     A++L+  M   G 
Sbjct: 405 ASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 464

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           + ++ TYN  I ++ + G++E A +L + M E+G+ PD  TYTSL++G     N+  A E
Sbjct: 465 APSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALE 524

Query: 527 VFNK----SVNHDVMLARSILS 544
           +FN+     +N +V+    I+S
Sbjct: 525 LFNEMPQLGLNRNVVTYTVIIS 546



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/468 (22%), Positives = 203/468 (43%), Gaps = 18/468 (3%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           +L  F++A ++  F     S    L +L  S  +      L+Q+  + I +    +  ++
Sbjct: 137 SLEVFDYARKK-GFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVV 195

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYID-----NALKMFDE 179
             L +     +A ++ +E+   C+   P +   N+LL     +GYI+        ++   
Sbjct: 196 DGLCKKGEVVRAKALMDELV--CKGFKPSVITYNTLL-----NGYIEIKDVGGVNEILSL 248

Query: 180 MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
           M    V+++   + + I  +  ++K+ +   + DE+ K+   +     I   II+  CK 
Sbjct: 249 MEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKK--GIEPDVYIYTSIINWNCKF 306

Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
             ++ AF + DE+  R   P+   Y  +       G +   E+++   +  GV      +
Sbjct: 307 GNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIF 366

Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIE 358
              + G   +  I EA  L  ++    F ID    N +       + R  A      M E
Sbjct: 367 NTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEE 426

Query: 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418
           +G  P + + S L    CK     E   ++KV+        + +YN  +   C  G++ E
Sbjct: 427 RGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEE 486

Query: 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478
           AY +I EM+ +GL PD   Y SL++       +  A +L+++M   G + N+ TY ++IS
Sbjct: 487 AYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIIS 546

Query: 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
             S+ G  + A +L+  M ++G+ PD   Y+SL+  L +   L +  E
Sbjct: 547 GLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLE 594



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 2/185 (1%)

Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
           S+  +V  LC  G +  A  ++ E+  KG  P V  YN+L+        +    ++   M
Sbjct: 190 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 249

Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
             +    N+ TY +LI  +S   +IE A +LF  ML+KG+ PD   YTS++   C+  N+
Sbjct: 250 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 309

Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLK 581
           + AF +F++     ++         +   C+ G    A  ++  + S     D + ++  
Sbjct: 310 KRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK--GVDVNRVIFN 367

Query: 582 SLADA 586
           +L D 
Sbjct: 368 TLMDG 372



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 100/213 (46%)

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           + F   M++ G    + + + +   LCK+ +      +   L    +   + +YN +++ 
Sbjct: 173 VEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNG 232

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
                 +     ++  M++  +D +V+ Y  L+E   R   +  A+KL+D+M   G   +
Sbjct: 233 YIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD 292

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           +  Y  +I+   + G ++ A  LF  M E+ + P+A TY +L+ G C+   ++AA  + N
Sbjct: 293 VYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVN 352

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
              +  V + R I +T M   C++G    A +L
Sbjct: 353 DMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRL 385



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 161/388 (41%), Gaps = 24/388 (6%)

Query: 46  SLSPSLVARVINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSL 94
           +L   LV +   P ++T+++L  G+                ++    ++  +Y  +++  
Sbjct: 209 ALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWY 268

Query: 95  SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154
           S S +I   + +  ++    I  D  +Y  II    +  N ++AF +F+E+         
Sbjct: 269 SRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNA 328

Query: 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214
               +L+      G +  A  M ++M  +GV+ + + F   +  +C+         M+DE
Sbjct: 329 YTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG-------MIDE 381

Query: 215 VRKRENSMIN-----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269
             + +N M        +    +I  GFC+  R EEA ++L  +  R   P+ +++ I+ +
Sbjct: 382 ALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILID 441

Query: 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329
            +    +  E   + K   K G AP    Y  FI     + ++ EA +L   +       
Sbjct: 442 IYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMP 501

Query: 330 DDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388
           D     +LI G  +S +   A+  FN M + G    + T + +   L K  ++DE  ++Y
Sbjct: 502 DTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLY 561

Query: 389 KVLSANDYFTDMESYNVMVSFLCTSGRL 416
             ++      D   Y+ +++ L   G L
Sbjct: 562 DEMNKEGIVPDDGIYSSLIASLHKVGPL 589


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 183/417 (43%), Gaps = 19/417 (4%)

Query: 190 IGFGV-------FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
           +GFG+        +   C    LG+   + +++ K EN   N SV   ++IHG C+  R+
Sbjct: 200 LGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPN-SVTYSILIHGLCEAGRL 258

Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
           EEAF++  E+  + C+P    Y ++ +    +G   +   +L +       P  + Y   
Sbjct: 259 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 318

Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGR 361
           I  L  E +I EA  +   ++           NALI G        SA    + M EKG 
Sbjct: 319 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM-EKGN 377

Query: 362 V-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
             P + T + L + LC+ +KS +   + + +  N    D  +YN++V   C  G+L  A+
Sbjct: 378 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 437

Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
            +   M   GL+PD   + +L++  C+   L  A  +   M   G S +  T+  LI   
Sbjct: 438 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 497

Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
            ++G+ +    LF NM+E      A T+   L+ L ++  L  A  +  K + + ++ + 
Sbjct: 498 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 557

Query: 541 SILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMA 592
              +  +   CR G   ++ K+L      G S ++    ++ I++  L +   VE A
Sbjct: 558 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNV---YTYTIIINGLCNNGRVEEA 611



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 193/438 (44%), Gaps = 9/438 (2%)

Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNE-VKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176
           +S  Y  +I  L +    ++AF +  E V+  C+         L+      G  D A+KM
Sbjct: 241 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP-STRTYTVLIKAKCDIGMTDKAMKM 299

Query: 177 FDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
            DEM+ +    +   + + I + C   K+ +   +  ++ K  + +  G +    +I+G+
Sbjct: 300 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK--HGLCPGIITFNALINGY 357

Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296
           CK   V  AF++L  +    CKP+   Y  + E    +   ++  ++L++    G+ P  
Sbjct: 358 CKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDR 417

Query: 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP-RSAIVFFNF 355
             Y   + G   E ++  A  +   + S     D     ALI  +  +     A      
Sbjct: 418 VTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGS 477

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M++KG      T + L    CK  K+ ++  +++ +  N   T   ++N  +  L    +
Sbjct: 478 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 537

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
           L EA  ++ +M + GL P V  +  L+E  CR      + K+ ++M  +GCS N+ TY I
Sbjct: 538 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 597

Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
           +I+     G +E A  +  +M   GV+P+  TY  L++   +   L  AF++ +  V + 
Sbjct: 598 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 657

Query: 536 VM----LARSILSTFMIS 549
                 +  ++LS F++S
Sbjct: 658 CQPNSHIYSALLSGFVLS 675



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 1/210 (0%)

Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
           M E G   +    S L   L K N       VY+ +    +      Y  +V+ LC +G 
Sbjct: 127 MTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 186

Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSGNLKTYN 474
           ++ A     ++ R G   D     SL+ A CR D L  A +++++M     C  N  TY+
Sbjct: 187 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 246

Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
           ILI    E G +E A +L   M+EKG  P   TYT L++  C       A ++ ++    
Sbjct: 247 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306

Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLR 564
             +      +  +  LCR G    A  + R
Sbjct: 307 ACVPNVHTYTILIDRLCREGKIEEANGVFR 336



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 105/531 (19%), Positives = 205/531 (38%), Gaps = 74/531 (13%)

Query: 43  LRDSLSPSLVA--RVINPYLLTHHSLALGFFNWAS--QQPNFTHSPLSYHSILKSLS-LS 97
           L+  L P ++    +IN Y        +  F   S  ++ N   +  +Y+ +++ L  +S
Sbjct: 339 LKHGLCPGIITFNALINGY--CKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 396

Query: 98  RQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-- 155
           +   A   +L++V  N +  D   Y  ++    +      AF++FN +  N   + P+  
Sbjct: 397 KSYKAF-LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM--NSAGLEPDGF 453

Query: 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE-------------- 201
              +L+  L   G ++ A  +   M  +G+    + F   I   C+              
Sbjct: 454 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 513

Query: 202 ---------------------NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
                                + KL +  +ML ++ K    ++   V   ++I G C+  
Sbjct: 514 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY--GLVPSVVTHTILIEGHCRAG 571

Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
               + K+L+ ++   C P+   Y I+       G V E E +L      GV+P    Y 
Sbjct: 572 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 631

Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG----SVSSIDPRSAIVFFNFM 356
             +   +   R+  A ++   +V      +  + +AL+     S ++I  R+       +
Sbjct: 632 VLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARA-------L 684

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM-----ESYNVMVSFLC 411
              G +   S  S  + N C  +    L++V   L   D          + YN +V  LC
Sbjct: 685 SSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLC 744

Query: 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCS 467
             GR+ EA  + Q+M + GL PD +  +S++E  C+    ++ L   K + D  F     
Sbjct: 745 KEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVP--- 800

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518
            +  +Y  +I      G ++ A +L  +++      +    T  +E L +E
Sbjct: 801 -SFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKE 850


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
           R A + F+ + + G  P++ + + L     K    DE   +   + A+    D+ +Y+V+
Sbjct: 153 RLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVL 212

Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
           ++ LC   ++ EA+ +  EM  KGL P+   + +L++  C+   L  A +++ Q+ + G 
Sbjct: 213 INGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGL 272

Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
           S +L TYN LI  F + G+++    L   M  KG+ PD  TYT+L++G C+E +L+ AFE
Sbjct: 273 SPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLK 581
              K +  ++ L   + +  +  LC+ G  + A K+LR     GL  D G   ++ I++ 
Sbjct: 333 YRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSG---TYTIVMN 389

Query: 582 SLADAREVEMAIEHIKWIQ 600
                 +V    + +K +Q
Sbjct: 390 EFCKNGDVNTGSKLLKEMQ 408



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 113/236 (47%), Gaps = 8/236 (3%)

Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
           YK +    Y   +  +N+++   C  G +R A  V   + + GL P V  +N+LM    +
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIK 183

Query: 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507
             +L    +L + M ASG   ++ TY++LI+   +  +++ A  LF  MLEKG+ P+  T
Sbjct: 184 MGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVT 243

Query: 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF-----LVATKL 562
           +T+L++G C+   L  A E++ + ++  +       +T +   C++G       L+    
Sbjct: 244 FTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMS 303

Query: 563 LRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618
           ++GL  D     ++  L+       ++E A E+ K + E +  +   +   L + L
Sbjct: 304 MKGLKPD---KITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGL 356



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 118/312 (37%), Gaps = 69/312 (22%)

Query: 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290
           +++H FCK   +  A  V D +     KP  +++  +   +  MG + E   +       
Sbjct: 141 ILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHAS 200

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350
           G  P    Y   I GL  E ++ EA EL                                
Sbjct: 201 GAQPDVYTYSVLINGLCKESKMDEAHEL-------------------------------- 228

Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
             F+ M+EKG VP   T + L    CK  K D  +E+YK + +     D+ +YN ++   
Sbjct: 229 --FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGF 286

Query: 411 CTSGRLREAYGVIQEMKRKGLDPD-VSF-------------------------------- 437
           C  G L++   +I EM  KGL PD +++                                
Sbjct: 287 CKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDD 346

Query: 438 --YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495
             Y +L+   C+E     A+K+  +M + G   +  TY I++++F + G++    +L   
Sbjct: 347 VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKE 406

Query: 496 MLEKGVAPDATT 507
           M   G  P   T
Sbjct: 407 MQRDGHVPSVVT 418



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/278 (19%), Positives = 108/278 (38%), Gaps = 36/278 (12%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+      G +D   ++ + M   G +     + V I   C+ +K+ +   + DE+  
Sbjct: 175 NTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEML- 233

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  ++   V    +I G CK  +++ A ++  ++  +   PD I Y  +   F   G +
Sbjct: 234 -EKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDL 292

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +   ++ +    G+ P    Y   I G   E  +  A E  + ++     +DD V  AL
Sbjct: 293 KQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTAL 352

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
           I                                    LCK  +S +  ++ + + +    
Sbjct: 353 I----------------------------------SGLCKEGRSVDAEKMLREMLSVGLK 378

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
            D  +Y ++++  C +G +     +++EM+R G  P V
Sbjct: 379 PDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSV 416


>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
 gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
          Length = 735

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 230/514 (44%), Gaps = 31/514 (6%)

Query: 25  RPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSP 84
           R  ++W P +   L +L     + PSLVA V+         LAL FF WA +Q  F H  
Sbjct: 111 RRHQRWGPPVVADLSKL---RRVPPSLVAEVLTARPPPPPPLALPFFLWAGRQKGFRHCF 167

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            ++H++   LS +    A D +   ++ +   +  S    ++      +   +A      
Sbjct: 168 PAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLTLLVRLHTAARRPLRALHALR- 226

Query: 145 VKFNCE-DIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201
            +F  E D+ P++  CN +L  LA+ G++++ALK+FDEMS  GV+   + F + +     
Sbjct: 227 -RFRHEFDVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVQPIPVTFAIVVRALAH 285

Query: 202 NAKLGQVLSMLDEVRK---RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
                ++L M+  +R    R +  +  +++  ++  G+  G       +V +E+     +
Sbjct: 286 AGMTDRLLEMIGRMRNEVCRPDVFVYTALVKTMVRRGYMDG-----CIRVWEEMEKDGVE 340

Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
           PD +AY  +   F   G V E   + K+ R  G+    + Y   I G +   R+ +   L
Sbjct: 341 PDTMAYATMVGGFCNTGMVEEAAELFKEMRSKGLLVARSVYASLIDGYVAAGRVGDGCRL 400

Query: 319 GEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377
            + +V      D  + N LI  +  I     A   F  ++++  +P+  T+S L   L +
Sbjct: 401 LKELVDAGSRADLGIYNTLISGLCGIGREDKAHNLFRIVLQEELMPSSDTVSPL---LAR 457

Query: 378 RNKSDELVEVYKVLS--ANDYFTDMES-YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434
             +  E+V  + +++  A      +E   + M  F    GR  +A  V   +K K     
Sbjct: 458 YAEKGEMVTFFGLVNKLAELGLPVIEMLVDFMKLFAGKDGRELKAMEVFDALKEKQY-CS 516

Query: 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK----TYNILISKFSEVGEIEGAL 490
           V  YN L+E   +    + +  L+++M +   S N K    TY+ +I  F + G +E A 
Sbjct: 517 VGIYNILIENLLKIKDRKKSLLLFEEMQS---SVNFKPDSCTYSHMIPCFMDEGNVEEAC 573

Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
             ++ ++++   P  + Y +L++GLC+   + AA
Sbjct: 574 SCYNTVMKENWIPSMSAYCALVKGLCKMGEINAA 607



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 1/234 (0%)

Query: 335 NALIGSVSSIDP-RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           N ++G++++      A+  F+ M E G  P   T + + + L     +D L+E+   +  
Sbjct: 242 NRVLGALAAAGHVEDALKLFDEMSEGGVQPIPVTFAIVVRALAHAGMTDRLLEMIGRMRN 301

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
                D+  Y  +V  +   G +     V +EM++ G++PD   Y +++   C   ++  
Sbjct: 302 EVCRPDVFVYTALVKTMVRRGYMDGCIRVWEEMEKDGVEPDTMAYATMVGGFCNTGMVEE 361

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
           A +L+ +M + G       Y  LI  +   G +    RL   +++ G   D   Y +L+ 
Sbjct: 362 AAELFKEMRSKGLLVARSVYASLIDGYVAAGRVGDGCRLLKELVDAGSRADLGIYNTLIS 421

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567
           GLC       A  +F   +  ++M +   +S  +     +G  +    L+  L+
Sbjct: 422 GLCGIGREDKAHNLFRIVLQEELMPSSDTVSPLLARYAEKGEMVTFFGLVNKLA 475


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 187/424 (44%), Gaps = 10/424 (2%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           CN++L  L        A ++FDEM  RG+  S + +   I        + +   + D++ 
Sbjct: 154 CNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMV 213

Query: 217 KRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
            ++   I+ +V+    +I   C+   + +A ++ D ++    +P+   Y ++        
Sbjct: 214 AQQ---IDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRD 270

Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD--DV 333
            V    V+ ++  K G+ P    +   I G    +R  EAK  G  +   +F +     V
Sbjct: 271 DVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAK--GMFLEMPRFGVAPTVPV 328

Query: 334 LNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392
            N+L+ G+  S + + A+  +  M   G  P   T S + + LC   +        + + 
Sbjct: 329 YNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQ 388

Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
            +    +  +YN ++   C  G L EA      M   G++P+V  Y+SL++   +   ++
Sbjct: 389 EDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQ 448

Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
            A  ++ +M A G   N+ TY  LI   ++ G I+ A RL   M+E G++P+A T + L+
Sbjct: 449 IAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLV 508

Query: 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI-SLCRRGHFLVATKLLRGLSSDLG 571
           +GLC+E  +Q A     +          S+ S F I   C   + ++   L+ GL  D  
Sbjct: 509 DGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQ 568

Query: 572 HSDS 575
           H ++
Sbjct: 569 HCEA 572



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 112/495 (22%), Positives = 201/495 (40%), Gaps = 51/495 (10%)

Query: 62  THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAI-DSVLKQVKVNKI--TLD 118
           T  + ALG    A  Q       L     L++L      NA+ D ++K  +        D
Sbjct: 116 TTPAPALGVLVIALSQMGLLDEALYVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFD 175

Query: 119 SSVYRFIIPS------LIQGKNTQKAFSVFNEV--KFNCEDIGPEICN--SLLAVLASDG 168
             + R ++PS      LI     Q   +   EV  +   + I P +    +++  L  +G
Sbjct: 176 EMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEG 235

Query: 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228
            I +A ++FD M   G++ +   + V +   C+   +   + +  E+ K  + +   +VI
Sbjct: 236 CIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLK--SGLNPNAVI 293

Query: 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +I GFCK KR  EA  +  E+      P    Y  + +     G+  E   + ++  
Sbjct: 294 FTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT 353

Query: 289 KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF---------TIDDDVLNALIG 339
           +LG+ P      EF   ++V R +C+    G++ V+ +F          ++    NALI 
Sbjct: 354 RLGLCPD-----EFTCSIVV-RGLCDG---GQMHVADRFLQGVQEDGVNLNAAAYNALID 404

Query: 340 SVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398
               I +   A+     M E G  P + + S+L     KR K    + +Y  + A     
Sbjct: 405 EYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEP 464

Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
           ++ +Y  ++     +G +  A+ + +EM   G+ P+    + L++  CRE+ ++ A +  
Sbjct: 465 NVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFV 524

Query: 459 DQMFASGCSG-----------------NLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501
            +     CS                  N   Y  LI      G+   A +LF  M + G+
Sbjct: 525 MEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGM 584

Query: 502 APDATTYTSLLEGLC 516
            PD+ TYT L+ G C
Sbjct: 585 IPDSFTYTLLIRGQC 599



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
           +P L   + +   L K  +     E++  +        + +YN +++     G + +A  
Sbjct: 148 LPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQE 207

Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
           V  +M  + +DP+V  Y +++ A C E  +  A++L+D M  +G   N  TYN+L+S   
Sbjct: 208 VWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHC 267

Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
           +  ++  A+ L+  +L+ G+ P+A  +T+L++G C+      A  +F +     V     
Sbjct: 268 QRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVP 327

Query: 542 ILSTFMISLCRRGHFLVATKLLR-----GLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596
           + ++ M    R G+   A  L +     GL  D     +  I+++ L D  ++ +A   +
Sbjct: 328 VYNSLMDGAFRSGNAQEALALYQEMTRLGLCPD---EFTCSIVVRGLCDGGQMHVADRFL 384

Query: 597 KWIQE 601
           + +QE
Sbjct: 385 QGVQE 389



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 54/257 (21%)

Query: 90  ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII----------------------- 126
           +++ L    Q++  D  L+ V+ + + L+++ Y  +I                       
Sbjct: 367 VVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVG 426

Query: 127 --------PSLIQGKN----TQKAFSVFNEVKFNCEDIGPEICN--SLLAVLASDGYIDN 172
                    SLI G +     Q A +++ E+    + I P +    +L+   A +G ID 
Sbjct: 427 IEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMV--AKGIEPNVVTYTALIHGHAKNGGIDA 484

Query: 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENA--------------KLGQVLSMLDEVRK 217
           A ++  EM   G+  + I   V +   C EN               K   + S+      
Sbjct: 485 AFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTI 544

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
            E  +I  SVI + +I+G     +  EA K+   +R     PD   Y ++     ++G V
Sbjct: 545 EEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYV 604

Query: 278 FEREVVLKKKRKLGVAP 294
               ++     K+GV P
Sbjct: 605 LNAMMLYADMMKIGVKP 621


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 176/408 (43%), Gaps = 44/408 (10%)

Query: 157 CNSLLAVLASDGYIDNALKMFDEM-SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215
           CN L+  L   G +D A K+F EM     V      + V I   C   ++     ML E+
Sbjct: 183 CNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAEL 242

Query: 216 RKRENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274
              E S I  +V+   +++   C+  RVEEAF++   +     +P  + + I+       
Sbjct: 243 ---ERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARG 299

Query: 275 GSVFEREVVLKKKRKLGVAPRTNDYREFI---------------------LGL------- 306
               E + VL++    G+ P    Y + I                      G+       
Sbjct: 300 QRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTY 359

Query: 307 -IVERRICEAKE-------LGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVF--FNFM 356
            ++ + +C+  E       L E++++G  T+   + N+++        R  +V      M
Sbjct: 360 NLIAKALCKEGEMEHAEQILDEMLLAG-MTVHCSLFNSVVAWHLRGTGRLDVVLRLIREM 418

Query: 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
           + +   P  + ++   + LCKR K +E  E++ ++       ++ + N ++  LC    +
Sbjct: 419 VARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNM 478

Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
           +EA  V++ M   G++ D   YN +++ CC+   +  A +L D M   G   +L T+N  
Sbjct: 479 KEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTF 538

Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
           +  +  +G++E  L L   M  +G+ PD  TY ++++G C+  ++  A
Sbjct: 539 LRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKA 586



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 205/471 (43%), Gaps = 11/471 (2%)

Query: 90  ILKSLSLSRQINAIDSVLKQVK-VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148
           ++++L    Q++    V  +++  N +  D   Y  +I +L +      AF +  E++ +
Sbjct: 186 LVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERS 245

Query: 149 CEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206
              I P +   N L+  L   G ++ A ++   M    +  S + FG+ I       + G
Sbjct: 246 --GIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFG 303

Query: 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI 266
           +V ++L E+      +    VI   +I   C+     EA ++ DE+  +  K   + Y +
Sbjct: 304 EVDAVLQEMEGF--GITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNL 361

Query: 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL-GLIVERRICEAKELGEVIVSG 325
           +A+     G +   E +L +    G+    + +   +   L    R+     L   +V+ 
Sbjct: 362 IAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVAR 421

Query: 326 KFTIDDDVLNALIGSVS--SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
               +D V+ A I  +        +A ++F  ++ KG    ++T + L   LC+ N   E
Sbjct: 422 FLKPNDAVMTACIQELCKRGKHEEAAEIWF-LVLGKGLGVNIATSNALIHGLCQGNNMKE 480

Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
             +V K +  +    D  +YN+M+ F C + ++ EA  +  +M ++G  PD+  +N+ + 
Sbjct: 481 ATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLR 540

Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
           A C    +     L DQM + G   ++ TY  +I  + +  ++  A +    +++ G+ P
Sbjct: 541 AYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRP 600

Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           +A  Y +L+ G  +  ++  A  V +   ++ +       ++ M  +C  G
Sbjct: 601 NAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAG 651



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 111/504 (22%), Positives = 205/504 (40%), Gaps = 70/504 (13%)

Query: 83  SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142
           S +++  ++  L+  ++   +D+VL++++   IT +  +Y  +I    +  +  +A  +F
Sbjct: 285 SIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLF 344

Query: 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG-VFIWKFCE 201
           +E+            N +   L  +G +++A ++ DEM   G+      F  V  W    
Sbjct: 345 DEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRG 404

Query: 202 NAKLGQVLSMLDEVRKR---ENSMINGSVIAVL--------------------------- 231
             +L  VL ++ E+  R    N  +  + I  L                           
Sbjct: 405 TGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIAT 464

Query: 232 ---IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288
              +IHG C+G  ++EA KVL  +     + D I Y I+  +F    S  E  + L+   
Sbjct: 465 SNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMI-QFCCKASKMEEAIQLRDDM 523

Query: 289 -KLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR 347
            K G  P    +  F+      R  C    LG+V         +D+L+ L          
Sbjct: 524 IKRGFKPDLFTFNTFL------RAYC---NLGKV---------EDILHLL---------- 555

Query: 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407
                 + M  +G  P + T   +    CK     +  +    L  N    +   YN ++
Sbjct: 556 ------DQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALI 609

Query: 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467
                +G + +A GV+  MK  G+ P    YNSLM   C   L+  AK+++ Q       
Sbjct: 610 GGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIE 669

Query: 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
             +  Y I+I  F ++G+I+ A+  F  M  + + P+  TYT+L+   C+  N + AF++
Sbjct: 670 LGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKL 729

Query: 528 FNKSVNHDVMLARSILSTFMISLC 551
           F++ V+  ++      +T +   C
Sbjct: 730 FDEMVSSGIVPDTVSYNTLISGCC 753



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQA 523
           G S ++KT NIL+      G+++ A ++F  M +   VAPD  TYT +++ LC+   + A
Sbjct: 175 GASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDA 234

Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRG 554
           AF +  +     +       +  M +LCR G
Sbjct: 235 AFVMLAELERSGIQPTVVTYNVLMDALCRSG 265


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 117/572 (20%), Positives = 238/572 (41%), Gaps = 68/572 (11%)

Query: 55  VINPYLLTHHSLALGFFNWAS-----------QQPNFTHSPLSYHSILKSLSLSRQINAI 103
           V +P ++T++++  GFF                Q  F    ++++SI+ +L  +R ++  
Sbjct: 111 VCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNA 170

Query: 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT----QKAFSVFNEVKFNCEDIGPEIC-- 157
           + +L+Q+  N +  +   Y     S+I G +T    ++A  +F E+      + P+I   
Sbjct: 171 ELLLRQMVDNGVPPNKVTY----TSMIHGYSTLGRWEEATKMFREM--TGRGLIPDIVSW 224

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           NS +  L   G    A ++F  M+ +G   + + +G+ +  +        ++S  + ++ 
Sbjct: 225 NSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKG 284

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
             + ++   ++  ++I  + K   ++EA  +L E++ +   PD   Y  +      MG +
Sbjct: 285 --DGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRL 342

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            +      +    GV P T  Y   I G      + +AKEL             +++N  
Sbjct: 343 ADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVY-----------EMMNNG 391

Query: 338 IGSVSSIDPRSAIVFFNFMI----EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393
           I       PR  I FFN ++    ++GRV     + +L K++ +R               
Sbjct: 392 I-------PRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGER--------------- 429

Query: 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453
               +D+  +N ++   C  G + +A+ V+  M   G+ PD   YN+L+    +   +  
Sbjct: 430 ----SDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDD 485

Query: 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513
              L+ +M          TYNI++      G    A ++ H M+  G      TY  +L+
Sbjct: 486 GLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILK 545

Query: 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD--LG 571
           GLC+      A  +F K    +V    + L+T + S+        A  L   +S    + 
Sbjct: 546 GLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVP 605

Query: 572 HSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
           ++ ++ I++++L     VE A      +++S 
Sbjct: 606 NASTYGIMIRNLLKEGSVEEADNMFSSMEKSG 637



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 182/431 (42%), Gaps = 38/431 (8%)

Query: 158 NSLLAVLASDGYIDNALK-MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216
           N++L  L      D+A+K +   M+  G       + + + + C++ +  Q L +L  + 
Sbjct: 47  NTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMA 106

Query: 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
           K E       V    +IHGF K  ++ +A  +  E+  +   PD + +  +        +
Sbjct: 107 KEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARA 166

Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336
           V   E++L++    GV P    Y   I G     R  EA ++                  
Sbjct: 167 VDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKM------------------ 208

Query: 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396
                           F  M  +G +P + + ++   +LCK  +S E  E++  ++A  +
Sbjct: 209 ----------------FREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGH 252

Query: 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456
             ++ +Y +++    T G   +       MK  G+  +   +  L++A  +  ++  A  
Sbjct: 253 RPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAML 312

Query: 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
           +  +M   G S ++ TY+ LIS    +G +  A+  F+ M+  GV P+   Y SL++G C
Sbjct: 313 ILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFC 372

Query: 517 QETNLQAAFEVFNKSVNHDVMLAR-SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575
              +L  A E+  + +N+ +     +  ++ + S+C+ G  + A  +   L  D+G   S
Sbjct: 373 THGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFD-LVKDIGER-S 430

Query: 576 HVILLKSLADA 586
            +I+  +L D 
Sbjct: 431 DIIMFNTLIDG 441


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 164/395 (41%), Gaps = 40/395 (10%)

Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
           N+L+  L     + +A +    M   G       F   I  +C   +L     + D++  
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPL 192

Query: 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277
           R  S    +V    +I GFC+  RV+EA ++  EL     +PD   +  + +        
Sbjct: 193 RGFS--QDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLCDARRG 246

Query: 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL 337
            E   +L+K ++LG  P T  Y   +     E++  EA+++                   
Sbjct: 247 EEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKM------------------- 287

Query: 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397
                           N M + G VP   T + +    C+  +    V V++ +      
Sbjct: 288 ---------------LNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCE 332

Query: 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457
            ++ +YN MV   C  G++ +A  ++ +M+  G++PDV  YN L+   C +  +  A +L
Sbjct: 333 PNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRL 392

Query: 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
              M  +G + +  TYN+LI    + G+++ A  LF  +  +G+ P++ T+ +++ GLC+
Sbjct: 393 LRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCK 452

Query: 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
                 A     K V+          S F+ +LC+
Sbjct: 453 GGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCK 487



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/493 (19%), Positives = 197/493 (39%), Gaps = 47/493 (9%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
            +++S++     ++Q++    +  ++ +   + D+  Y  +I    +     +A  +F E
Sbjct: 165 FTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRE 224

Query: 145 VKFNCEDIGPEICN--SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           ++       P++    +L+  L      +  L M  +M   G   +T  +   +  +C  
Sbjct: 225 LE------QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCRE 278

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            K  +   ML+E+   +N ++  +V    +++ +C+  R+  A +V + ++++ C+P+  
Sbjct: 279 QKAEEAEKMLNEMF--DNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVW 336

Query: 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322
            Y  + + F  +G V++   +L + R+ GV P    Y   I G  ++  I  A  L  ++
Sbjct: 337 TYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLM 396

Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382
                  D    N LI +                                  LCK  K D
Sbjct: 397 EGNGLAADQYTYNVLIDA----------------------------------LCKTGKVD 422

Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
           E   ++  L       +  ++N +++ LC  G+   A   +++M   G  PD   Y+  +
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFI 482

Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
           E  C+    R      D+M       +   Y I+I +  +      A R++  M+  G +
Sbjct: 483 ENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCS 542

Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSILSTFMISLCRRGHFLVA 559
           PD  TYT+ +   C E  L  A  V  +     ++   +A + L     S+ +  H +  
Sbjct: 543 PDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTI 602

Query: 560 TKLLRGLSSDLGH 572
            K + G++S   H
Sbjct: 603 LKHMTGVASMPNH 615



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 5/277 (1%)

Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSA 349
           G  P    +   ILG    +++  A++L + +    F+ D     ALI G   +     A
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEA 218

Query: 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409
           +  F  + +    P + T + L K LC   + +E + + + +    +     +Y  +V  
Sbjct: 219 LELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDL 274

Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469
            C   +  EA  ++ EM   GL P      +++ A CRE  +  A ++++ M   GC  N
Sbjct: 275 WCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPN 334

Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
           + TYN ++  F  VG++  A+ L   M E GV PD  TY  L+ G C + ++++AF +  
Sbjct: 335 VWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLR 394

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566
               + +   +   +  + +LC+ G    A  L  GL
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 108/524 (20%), Positives = 203/524 (38%), Gaps = 27/524 (5%)

Query: 67  ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126
           AL  F    Q   +TH+     +++K L  +R+      +L+++K       +  Y  ++
Sbjct: 218 ALELFRELEQPDMYTHA-----ALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALV 272

Query: 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186
               + +  ++A  + NE+  N        C +++     +G +  A+++F+ M  +G E
Sbjct: 273 DLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCE 332

Query: 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246
            +   +   +  FC   K+ + +++LD++  RE  +    V   L+I G C    +E AF
Sbjct: 333 PNVWTYNAMVQGFCNVGKVYKAMALLDQM--RECGVEPDVVTYNLLIRGQCIDGHIESAF 390

Query: 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306
           ++L  +       D   Y ++ +     G V E   +       G+ P +  +   I GL
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450

Query: 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKGRVPTL 365
               +   A    E +VS     D    +  I ++      R  + F + M++K   P+ 
Sbjct: 451 CKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPST 510

Query: 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425
              + +   L K         ++  + +     D+ +Y   V   C  GRL EA  V+ E
Sbjct: 511 VNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVME 570

Query: 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL--------- 476
           MK+ G+  D   YN+L++          A  +   M       N  T+ IL         
Sbjct: 571 MKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRL 630

Query: 477 -------ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529
                   +   +  E+     LF  M +  V   A  Y ++LEG  +E  L     + +
Sbjct: 631 AEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVS 690

Query: 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573
                D+ L   I ++ +   C+   +  A  L   L S +GH 
Sbjct: 691 HMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWAL---LCSMIGHG 731



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/381 (17%), Positives = 148/381 (38%), Gaps = 29/381 (7%)

Query: 85  LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144
           +++++++  L    + +   + L+++       D+  Y   I +L + K +++  S  +E
Sbjct: 441 VTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDE 500

Query: 145 VKFNCEDIGPEICNSLLAV--LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
           +    +D+ P   N  + +  L  +     A +++ +M   G     + +   +  +C  
Sbjct: 501 MLQ--KDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNE 558

Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
            +L +  +++ E++K    +I  ++    +I G     + + A  +L  +      P+  
Sbjct: 559 GRLHEAENVVMEMKK--GGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHF 616

Query: 263 AYRIV---------AEEFKL----------MGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
            + I+         AE+  L          +  VFE   ++KK     V      Y   +
Sbjct: 617 TFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKN---SVPSSARAYLAIL 673

Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPR-SAIVFFNFMIEKGRV 362
            G   ERR+ E   L   +      +++D+  +L+     +     A      MI  G +
Sbjct: 674 EGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFL 733

Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
           P L +   L        ++D   E+++ L   +Y TD   + +++  L   G     + +
Sbjct: 734 PNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDM 793

Query: 423 IQEMKRKGLDPDVSFYNSLME 443
           I  +++    P    Y  L E
Sbjct: 794 ISILEQMKCKPSDETYAMLTE 814


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,242,005,095
Number of Sequences: 23463169
Number of extensions: 363982193
Number of successful extensions: 1059820
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6967
Number of HSP's successfully gapped in prelim test: 3794
Number of HSP's that attempted gapping in prelim test: 913262
Number of HSP's gapped (non-prelim): 68859
length of query: 652
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 503
effective length of database: 8,863,183,186
effective search space: 4458181142558
effective search space used: 4458181142558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)