Query 006281
Match_columns 652
No_of_seqs 685 out of 3734
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 21:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.6E-74 1.4E-78 624.9 61.8 571 54-647 157-730 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-71 2.5E-76 607.3 57.9 573 47-642 49-624 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.2E-68 1.6E-72 564.2 66.2 516 81-604 367-911 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.9E-67 4E-72 561.1 66.5 512 51-570 372-910 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8E-64 1.7E-68 532.7 51.3 480 118-647 86-567 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.5E-62 1.6E-66 517.6 51.9 471 82-603 85-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-34 8.1E-39 321.5 72.5 556 61-635 308-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-33 2.2E-38 318.0 73.2 566 55-639 268-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.5E-26 3.2E-31 259.2 69.0 588 34-636 47-739 (1157)
10 PRK11447 cellulose synthase su 100.0 2.8E-25 6.2E-30 248.9 68.4 571 52-639 32-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2E-23 4.4E-28 222.9 63.6 557 52-637 48-706 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.1E-20 2.4E-25 202.0 64.4 571 48-647 77-750 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.9E-23 6.4E-28 196.2 38.8 456 87-627 51-509 (966)
14 KOG2002 TPR-containing nuclear 99.9 4.6E-20 9.9E-25 184.2 53.6 557 64-637 146-745 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.1E-21 4.6E-26 183.8 37.3 370 223-637 113-485 (966)
16 KOG2002 TPR-containing nuclear 99.9 1.1E-19 2.4E-24 181.5 51.3 578 48-640 164-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-19 6.7E-24 188.2 51.2 434 157-606 130-575 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 3.5E-19 7.6E-24 187.7 48.2 429 191-637 129-571 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.7E-25 188.0 36.4 308 334-646 39-356 (389)
20 PRK15174 Vi polysaccharide exp 99.9 2.5E-19 5.4E-24 187.9 41.8 369 236-611 15-390 (656)
21 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.6E-23 182.7 44.1 354 195-606 48-407 (656)
22 PRK10049 pgaA outer membrane p 99.9 8E-18 1.7E-22 180.6 48.4 423 82-609 13-463 (765)
23 PRK11788 tetratricopeptide rep 99.9 4.4E-19 9.6E-24 177.8 35.3 301 163-536 44-349 (389)
24 PRK10049 pgaA outer membrane p 99.9 5E-18 1.1E-22 182.2 45.2 219 417-637 213-456 (765)
25 PRK14574 hmsH outer membrane p 99.9 4.7E-16 1E-20 163.4 53.7 461 92-607 42-518 (822)
26 PRK14574 hmsH outer membrane p 99.8 7.6E-16 1.7E-20 161.8 51.3 443 126-637 41-513 (822)
27 KOG2076 RNA polymerase III tra 99.8 1.1E-13 2.5E-18 138.3 53.9 585 46-637 134-849 (895)
28 KOG4422 Uncharacterized conser 99.8 1.4E-14 2.9E-19 132.2 42.7 381 225-629 206-617 (625)
29 KOG4422 Uncharacterized conser 99.8 7.5E-15 1.6E-19 133.8 37.5 244 81-328 204-465 (625)
30 KOG0495 HAT repeat protein [RN 99.8 3.4E-12 7.4E-17 123.0 57.0 453 168-637 390-880 (913)
31 KOG2076 RNA polymerase III tra 99.8 1E-13 2.2E-18 138.6 47.7 190 94-289 149-344 (895)
32 KOG2003 TPR repeat-containing 99.8 1.1E-14 2.4E-19 133.7 37.7 479 121-623 203-709 (840)
33 KOG0495 HAT repeat protein [RN 99.8 6.7E-13 1.4E-17 127.7 48.6 498 92-612 384-889 (913)
34 KOG2003 TPR repeat-containing 99.8 3.9E-15 8.5E-20 136.6 31.7 462 85-555 202-709 (840)
35 KOG1915 Cell cycle control pro 99.8 3.3E-12 7.2E-17 118.4 48.9 480 83-601 72-584 (677)
36 KOG0547 Translocase of outer m 99.7 4.1E-14 8.9E-19 131.4 33.4 220 411-635 337-564 (606)
37 PF13429 TPR_15: Tetratricopep 99.7 4.6E-17 1E-21 154.1 13.3 261 370-636 13-276 (280)
38 KOG1915 Cell cycle control pro 99.7 2.5E-11 5.3E-16 112.8 47.4 444 117-607 71-541 (677)
39 PRK10747 putative protoheme IX 99.7 2.1E-13 4.5E-18 135.1 33.9 289 339-636 93-389 (398)
40 KOG4318 Bicoid mRNA stability 99.7 4.1E-13 8.9E-18 133.6 34.5 511 76-641 17-598 (1088)
41 COG2956 Predicted N-acetylgluc 99.7 5.8E-13 1.3E-17 117.5 31.5 308 333-645 38-355 (389)
42 PRK10747 putative protoheme IX 99.7 3.5E-13 7.5E-18 133.5 34.2 255 341-602 129-390 (398)
43 TIGR00540 hemY_coli hemY prote 99.7 7.1E-13 1.5E-17 132.1 34.0 293 339-637 93-399 (409)
44 TIGR00540 hemY_coli hemY prote 99.7 9.5E-13 2.1E-17 131.2 34.4 256 341-601 129-398 (409)
45 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.4E-18 134.1 25.6 285 345-640 334-623 (638)
46 KOG1155 Anaphase-promoting com 99.6 2E-11 4.3E-16 113.2 38.8 323 226-568 164-494 (559)
47 KOG0547 Translocase of outer m 99.6 2E-12 4.3E-17 120.4 32.0 222 376-602 337-566 (606)
48 PF13429 TPR_15: Tetratricopep 99.6 2.1E-15 4.7E-20 142.7 12.2 254 342-601 20-276 (280)
49 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.4E-18 134.1 23.7 291 276-608 334-626 (638)
50 KOG1155 Anaphase-promoting com 99.6 4.6E-11 9.9E-16 110.8 37.3 312 268-602 234-553 (559)
51 COG3071 HemY Uncharacterized e 99.6 2.8E-11 6E-16 110.6 33.6 291 338-637 92-390 (400)
52 KOG3785 Uncharacterized conser 99.6 5.5E-10 1.2E-14 100.1 38.5 184 91-289 29-213 (557)
53 COG2956 Predicted N-acetylgluc 99.6 2.3E-12 4.9E-17 113.8 22.8 248 377-632 47-306 (389)
54 COG3071 HemY Uncharacterized e 99.6 6.7E-11 1.5E-15 108.1 32.6 251 344-601 132-389 (400)
55 KOG1173 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 110.1 35.0 260 341-606 255-522 (611)
56 KOG4162 Predicted calmodulin-b 99.5 2.3E-09 4.9E-14 106.3 43.1 404 224-637 321-783 (799)
57 KOG1129 TPR repeat-containing 99.5 2.4E-12 5.3E-17 113.6 19.7 229 403-637 226-458 (478)
58 KOG1173 Anaphase-promoting com 99.5 1E-09 2.2E-14 104.8 38.1 491 47-568 14-517 (611)
59 KOG4318 Bicoid mRNA stability 99.5 1.5E-10 3.2E-15 115.9 33.1 483 105-636 11-556 (1088)
60 KOG4162 Predicted calmodulin-b 99.5 1.4E-08 3.1E-13 100.8 45.1 467 131-609 239-790 (799)
61 PRK12370 invasion protein regu 99.5 1.8E-11 3.9E-16 126.9 27.0 251 380-638 276-536 (553)
62 KOG2047 mRNA splicing factor [ 99.5 5.6E-08 1.2E-12 94.4 47.6 437 120-568 103-614 (835)
63 KOG1129 TPR repeat-containing 99.5 4.7E-12 1E-16 111.8 18.5 242 365-612 223-468 (478)
64 KOG2047 mRNA splicing factor [ 99.5 1.1E-07 2.4E-12 92.5 50.9 537 84-632 102-718 (835)
65 TIGR02521 type_IV_pilW type IV 99.4 8.9E-11 1.9E-15 108.7 26.5 197 400-599 31-229 (234)
66 TIGR02521 type_IV_pilW type IV 99.4 5.8E-11 1.3E-15 110.0 24.9 201 434-637 30-232 (234)
67 KOG1156 N-terminal acetyltrans 99.4 7.5E-08 1.6E-12 93.9 44.7 131 467-600 366-509 (700)
68 KOG1156 N-terminal acetyltrans 99.4 1.6E-08 3.4E-13 98.4 39.7 425 166-639 19-470 (700)
69 PRK12370 invasion protein regu 99.4 5.3E-11 1.2E-15 123.4 25.0 216 414-637 275-502 (553)
70 KOG3785 Uncharacterized conser 99.4 7.9E-08 1.7E-12 86.6 40.9 455 61-577 35-498 (557)
71 KOG1174 Anaphase-promoting com 99.4 2.4E-08 5.3E-13 91.7 38.2 192 411-606 311-504 (564)
72 KOG2376 Signal recognition par 99.4 1.4E-08 3.1E-13 97.7 37.6 143 485-631 356-514 (652)
73 KOG1174 Anaphase-promoting com 99.4 1.9E-07 4.1E-12 86.1 42.5 268 295-572 231-504 (564)
74 COG3063 PilF Tfp pilus assembl 99.4 1.5E-10 3.3E-15 97.8 18.8 195 438-635 38-234 (250)
75 KOG0548 Molecular co-chaperone 99.3 3E-09 6.4E-14 101.3 29.0 238 368-620 227-472 (539)
76 PF12569 NARP1: NMDA receptor- 99.3 2.1E-07 4.5E-12 93.3 41.1 117 344-463 208-333 (517)
77 KOG0985 Vesicle coat protein c 99.3 1.4E-06 3E-11 89.3 45.1 127 84-214 606-749 (1666)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 80.5 6.6 49 468-516 1-49 (50)
79 PRK11189 lipoprotein NlpI; Pro 99.3 7.5E-09 1.6E-13 98.2 26.7 219 379-606 40-269 (296)
80 PF13041 PPR_2: PPR repeat fam 99.3 2.1E-11 4.6E-16 80.1 6.6 49 398-446 1-49 (50)
81 KOG2376 Signal recognition par 99.2 8.6E-07 1.9E-11 85.8 39.8 456 90-600 18-518 (652)
82 PF12569 NARP1: NMDA receptor- 99.2 2.7E-08 6E-13 99.5 31.4 289 197-531 12-331 (517)
83 KOG1127 TPR repeat-containing 99.2 6.7E-07 1.5E-11 91.6 40.0 563 59-637 469-1104(1238)
84 KOG4340 Uncharacterized conser 99.2 2.8E-08 6.1E-13 87.2 25.9 317 157-496 13-336 (459)
85 COG3063 PilF Tfp pilus assembl 99.2 1.7E-08 3.6E-13 85.7 23.6 203 402-607 37-241 (250)
86 KOG3617 WD40 and TPR repeat-co 99.2 3.6E-06 7.8E-11 84.5 43.1 121 83-215 756-884 (1416)
87 KOG1840 Kinesin light chain [C 99.2 1E-08 2.2E-13 101.2 24.8 234 402-635 201-477 (508)
88 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.6E-13 95.8 24.8 219 413-639 39-267 (296)
89 KOG1840 Kinesin light chain [C 99.2 1E-08 2.2E-13 101.2 23.8 236 365-600 199-477 (508)
90 KOG1127 TPR repeat-containing 99.1 1.4E-06 3.1E-11 89.3 36.8 506 100-630 474-1029(1238)
91 KOG0624 dsRNA-activated protei 99.1 4.8E-07 1E-11 81.3 29.3 298 304-607 46-375 (504)
92 KOG4340 Uncharacterized conser 99.1 8.6E-07 1.9E-11 78.2 28.6 396 188-636 9-442 (459)
93 KOG3616 Selective LIM binding 99.1 1.5E-06 3.3E-11 86.0 33.4 168 408-598 740-907 (1636)
94 KOG1125 TPR repeat-containing 99.1 1.2E-08 2.6E-13 98.1 17.8 218 411-636 296-526 (579)
95 PRK04841 transcriptional regul 99.1 5E-05 1.1E-09 85.5 50.1 416 170-605 291-763 (903)
96 PLN02789 farnesyltranstransfer 99.0 2.7E-07 5.8E-12 87.2 26.0 222 409-635 46-300 (320)
97 KOG0548 Molecular co-chaperone 99.0 3.2E-06 6.9E-11 81.2 32.5 228 340-583 234-470 (539)
98 KOG1125 TPR repeat-containing 99.0 8.5E-08 1.9E-12 92.4 21.5 252 375-630 295-564 (579)
99 cd05804 StaR_like StaR_like; a 99.0 2.3E-06 5.1E-11 84.6 33.1 93 404-497 118-213 (355)
100 cd05804 StaR_like StaR_like; a 99.0 2.5E-06 5.4E-11 84.5 32.8 260 374-638 52-337 (355)
101 KOG1914 mRNA cleavage and poly 99.0 3.4E-05 7.4E-10 74.2 37.6 64 153-218 19-82 (656)
102 PRK04841 transcriptional regul 99.0 1.4E-05 3.1E-10 89.8 42.5 166 370-535 578-761 (903)
103 KOG0985 Vesicle coat protein c 99.0 7.6E-05 1.7E-09 77.1 44.5 323 82-497 982-1306(1666)
104 KOG3617 WD40 and TPR repeat-co 99.0 3.3E-06 7.2E-11 84.8 31.5 149 117-286 724-883 (1416)
105 PLN02789 farnesyltranstransfer 99.0 9.5E-07 2.1E-11 83.6 26.8 225 375-604 47-304 (320)
106 PF04733 Coatomer_E: Coatomer 99.0 2.5E-08 5.4E-13 93.0 15.9 228 366-607 36-270 (290)
107 KOG2053 Mitochondrial inherita 98.9 9.5E-05 2.1E-09 75.7 45.6 538 55-635 16-606 (932)
108 KOG3616 Selective LIM binding 98.9 8.8E-05 1.9E-09 74.0 40.9 78 91-179 739-816 (1636)
109 PF04733 Coatomer_E: Coatomer 98.9 5.6E-08 1.2E-12 90.6 16.3 248 375-637 11-265 (290)
110 KOG0624 dsRNA-activated protei 98.9 5.1E-05 1.1E-09 68.7 34.8 305 231-568 43-369 (504)
111 KOG1128 Uncharacterized conser 98.9 5.3E-07 1.2E-11 89.4 22.0 219 402-640 400-619 (777)
112 PRK10370 formate-dependent nit 98.8 3.2E-07 6.8E-12 80.8 17.7 152 442-607 23-178 (198)
113 TIGR03302 OM_YfiO outer membra 98.8 4E-07 8.7E-12 83.9 19.1 187 434-638 32-233 (235)
114 KOG2053 Mitochondrial inherita 98.8 0.00025 5.4E-09 72.8 42.7 493 96-632 21-565 (932)
115 KOG1914 mRNA cleavage and poly 98.8 0.00017 3.7E-09 69.6 42.4 79 81-163 17-95 (656)
116 PRK15359 type III secretion sy 98.8 3.7E-07 8E-12 75.9 15.9 116 490-610 13-129 (144)
117 PRK10370 formate-dependent nit 98.8 9.6E-07 2.1E-11 77.7 19.0 152 407-573 23-178 (198)
118 TIGR03302 OM_YfiO outer membra 98.8 1.4E-06 3.1E-11 80.3 20.5 185 399-604 32-234 (235)
119 KOG1070 rRNA processing protei 98.8 6.1E-06 1.3E-10 87.8 26.4 235 399-636 1457-1699(1710)
120 KOG1128 Uncharacterized conser 98.8 7.1E-07 1.5E-11 88.6 18.6 219 363-601 396-615 (777)
121 PRK15179 Vi polysaccharide bio 98.7 1.7E-06 3.7E-11 90.4 22.0 216 399-637 27-245 (694)
122 COG5010 TadD Flp pilus assembl 98.7 3E-06 6.4E-11 74.1 19.4 160 439-601 70-230 (257)
123 COG5010 TadD Flp pilus assembl 98.7 1.3E-05 2.8E-10 70.2 21.1 165 399-568 66-230 (257)
124 PRK15359 type III secretion sy 98.7 1.8E-06 3.9E-11 71.8 15.6 124 455-584 13-137 (144)
125 KOG1070 rRNA processing protei 98.6 6.9E-06 1.5E-10 87.4 21.9 204 434-641 1457-1667(1710)
126 PF12854 PPR_1: PPR repeat 98.6 6.1E-08 1.3E-12 56.8 4.1 34 255-288 1-34 (34)
127 PRK14720 transcript cleavage f 98.6 2.1E-05 4.5E-10 83.2 24.8 44 575-619 225-268 (906)
128 KOG3060 Uncharacterized conser 98.6 4.7E-05 1E-09 66.1 22.4 185 379-568 26-219 (289)
129 PF12854 PPR_1: PPR repeat 98.6 7.4E-08 1.6E-12 56.4 3.9 29 467-495 4-32 (34)
130 PRK15179 Vi polysaccharide bio 98.6 2.1E-05 4.6E-10 82.4 24.4 186 367-568 30-216 (694)
131 TIGR02552 LcrH_SycD type III s 98.5 1.7E-06 3.8E-11 71.7 12.5 114 492-607 5-119 (135)
132 COG4783 Putative Zn-dependent 98.5 3.9E-05 8.4E-10 73.3 21.3 184 398-604 272-456 (484)
133 TIGR02552 LcrH_SycD type III s 98.5 3.1E-06 6.8E-11 70.2 12.8 94 542-636 19-113 (135)
134 PF09976 TPR_21: Tetratricopep 98.5 1.2E-05 2.6E-10 67.2 15.4 115 483-598 24-143 (145)
135 KOG3081 Vesicle coat complex C 98.4 0.00022 4.8E-09 62.6 22.6 254 338-607 16-276 (299)
136 COG4783 Putative Zn-dependent 98.4 9.9E-05 2.2E-09 70.6 21.7 111 482-595 318-430 (484)
137 KOG3081 Vesicle coat complex C 98.4 0.00064 1.4E-08 59.8 24.8 68 486-555 189-256 (299)
138 PRK14720 transcript cleavage f 98.3 0.00039 8.5E-09 73.9 26.5 151 227-411 117-268 (906)
139 PRK15363 pathogenicity island 98.3 8.7E-06 1.9E-10 66.2 11.2 89 513-602 43-132 (157)
140 KOG3060 Uncharacterized conser 98.3 0.0017 3.6E-08 56.8 26.0 192 341-537 23-223 (289)
141 PF09976 TPR_21: Tetratricopep 98.3 3.6E-05 7.8E-10 64.4 15.1 125 507-634 14-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.6E-05 5.7E-10 75.4 14.9 128 437-570 171-298 (395)
143 KOG0553 TPR repeat-containing 98.2 1.6E-05 3.5E-10 71.0 10.7 87 480-568 91-177 (304)
144 PF12895 Apc3: Anaphase-promot 98.2 3.7E-06 8E-11 62.6 5.6 81 518-598 2-83 (84)
145 COG4700 Uncharacterized protei 98.2 0.00034 7.3E-09 57.8 16.9 131 502-634 86-219 (251)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00014 3E-09 70.4 17.2 126 402-534 171-297 (395)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 6E-05 1.3E-09 60.8 11.6 100 507-606 4-109 (119)
148 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.9E-05 1.9E-09 59.8 12.3 96 542-637 4-105 (119)
149 PLN03088 SGT1, suppressor of 98.0 9.6E-05 2.1E-09 72.0 14.0 96 512-608 9-105 (356)
150 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.6E-09 66.1 13.3 120 486-607 138-261 (287)
151 cd00189 TPR Tetratricopeptide 98.0 7.6E-05 1.6E-09 57.3 11.1 56 545-600 39-95 (100)
152 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 48.1 4.5 33 472-504 2-34 (35)
153 PRK15363 pathogenicity island 98.0 0.00017 3.7E-09 58.9 12.2 95 542-637 37-132 (157)
154 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 47.8 4.4 33 156-188 2-34 (35)
155 cd00189 TPR Tetratricopeptide 98.0 7.2E-05 1.6E-09 57.4 9.6 95 542-637 2-97 (100)
156 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3.1E-10 47.3 4.2 32 472-503 3-34 (34)
157 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.2 4.1 33 155-187 2-34 (34)
158 PF12895 Apc3: Anaphase-promot 97.9 9.9E-06 2.1E-10 60.3 4.0 80 553-634 2-84 (84)
159 KOG0550 Molecular chaperone (D 97.9 0.0017 3.7E-08 60.9 18.9 170 433-605 166-353 (486)
160 PF13432 TPR_16: Tetratricopep 97.9 3E-05 6.5E-10 54.3 6.2 60 547-606 4-64 (65)
161 PRK02603 photosystem I assembl 97.9 0.00028 6.2E-09 61.0 13.5 117 470-606 35-153 (172)
162 PF13414 TPR_11: TPR repeat; P 97.9 5.6E-05 1.2E-09 53.7 6.9 62 542-603 5-68 (69)
163 CHL00033 ycf3 photosystem I as 97.9 0.00044 9.4E-09 59.6 13.6 101 507-607 37-154 (168)
164 PF10037 MRP-S27: Mitochondria 97.8 0.00048 1E-08 67.1 14.2 126 184-309 61-186 (429)
165 PF10037 MRP-S27: Mitochondria 97.8 0.0004 8.6E-09 67.6 13.4 118 330-447 65-185 (429)
166 PLN03088 SGT1, suppressor of 97.8 0.00021 4.5E-09 69.7 11.4 92 545-637 7-99 (356)
167 KOG0553 TPR repeat-containing 97.8 0.00033 7.2E-09 62.9 11.4 97 444-544 90-186 (304)
168 PRK10153 DNA-binding transcrip 97.8 0.0017 3.7E-08 66.2 17.9 140 467-608 334-488 (517)
169 PF05843 Suf: Suppressor of fo 97.8 0.001 2.2E-08 62.5 15.0 129 437-568 3-135 (280)
170 COG4700 Uncharacterized protei 97.7 0.0075 1.6E-07 50.1 17.5 132 467-598 86-218 (251)
171 PF08579 RPM2: Mitochondrial r 97.7 0.00049 1.1E-08 51.9 9.8 42 406-447 31-73 (120)
172 COG4235 Cytochrome c biogenesi 97.7 0.0015 3.3E-08 59.1 14.5 100 467-568 153-255 (287)
173 PF08579 RPM2: Mitochondrial r 97.7 0.00066 1.4E-08 51.2 10.1 76 371-446 31-115 (120)
174 COG3898 Uncharacterized membra 97.7 0.048 1.1E-06 51.1 29.6 249 376-637 131-392 (531)
175 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.4E-09 50.6 6.0 59 578-637 2-60 (65)
176 KOG1130 Predicted G-alpha GTPa 97.6 0.00061 1.3E-08 63.6 10.8 131 507-637 197-344 (639)
177 PF01535 PPR: PPR repeat; Int 97.6 7.4E-05 1.6E-09 43.0 3.4 29 472-500 2-30 (31)
178 PF14938 SNAP: Soluble NSF att 97.6 0.0038 8.1E-08 59.0 16.7 95 510-604 119-227 (282)
179 PF13414 TPR_11: TPR repeat; P 97.6 0.00016 3.4E-09 51.4 5.7 65 572-637 2-67 (69)
180 PRK10803 tol-pal system protei 97.6 0.0012 2.6E-08 60.8 12.6 101 507-607 145-251 (263)
181 PRK02603 photosystem I assembl 97.6 0.0028 6.1E-08 54.8 14.4 94 435-529 35-130 (172)
182 KOG0550 Molecular chaperone (D 97.6 0.0034 7.4E-08 58.9 15.2 259 374-639 58-352 (486)
183 PRK15331 chaperone protein Sic 97.6 0.0016 3.4E-08 53.6 11.6 117 485-602 8-134 (165)
184 PF01535 PPR: PPR repeat; Int 97.6 9.7E-05 2.1E-09 42.5 3.5 29 156-184 2-30 (31)
185 PF14559 TPR_19: Tetratricopep 97.6 0.0002 4.2E-09 50.7 5.9 55 552-606 3-58 (68)
186 PF05843 Suf: Suppressor of fo 97.6 0.0019 4.2E-08 60.6 14.1 134 471-606 2-140 (280)
187 PRK10153 DNA-binding transcrip 97.6 0.0028 6.2E-08 64.6 16.2 135 500-637 332-482 (517)
188 PF14938 SNAP: Soluble NSF att 97.5 0.01 2.2E-07 56.1 18.5 91 234-325 122-225 (282)
189 PF14559 TPR_19: Tetratricopep 97.5 0.00027 5.8E-09 50.0 6.1 53 516-569 2-54 (68)
190 KOG2041 WD40 repeat protein [G 97.5 0.14 3.1E-06 51.9 27.2 174 116-318 689-874 (1189)
191 PRK10866 outer membrane biogen 97.5 0.027 5.8E-07 51.5 19.9 58 578-635 180-239 (243)
192 CHL00033 ycf3 photosystem I as 97.5 0.0035 7.7E-08 54.0 13.1 95 470-565 35-138 (168)
193 PRK15331 chaperone protein Sic 97.4 0.016 3.4E-07 47.9 15.7 88 480-569 47-134 (165)
194 PRK10866 outer membrane biogen 97.4 0.094 2E-06 48.0 23.0 177 89-287 37-238 (243)
195 PRK10803 tol-pal system protei 97.4 0.0022 4.7E-08 59.0 11.7 96 541-637 144-246 (263)
196 PF12688 TPR_5: Tetratrico pep 97.4 0.0068 1.5E-07 47.9 12.4 84 515-598 11-100 (120)
197 PF13371 TPR_9: Tetratricopept 97.4 0.00096 2.1E-08 48.0 7.2 60 548-607 3-63 (73)
198 COG3118 Thioredoxin domain-con 97.3 0.031 6.7E-07 50.7 17.4 154 478-632 142-296 (304)
199 PF06239 ECSIT: Evolutionarily 97.3 0.0037 8E-08 53.8 11.2 107 79-204 42-153 (228)
200 PF06239 ECSIT: Evolutionarily 97.3 0.005 1.1E-07 53.0 11.8 103 399-520 46-153 (228)
201 KOG2041 WD40 repeat protein [G 97.2 0.3 6.4E-06 49.7 24.7 204 82-321 690-903 (1189)
202 PF13525 YfiO: Outer membrane 97.2 0.077 1.7E-06 47.2 19.3 50 578-627 146-197 (203)
203 PF12688 TPR_5: Tetratrico pep 97.2 0.0053 1.1E-07 48.5 10.4 93 543-635 4-102 (120)
204 PF07079 DUF1347: Protein of u 97.2 0.24 5.2E-06 47.8 40.3 193 436-633 299-520 (549)
205 KOG0543 FKBP-type peptidyl-pro 97.1 0.0076 1.7E-07 56.9 11.8 96 541-637 258-355 (397)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.02 4.3E-07 53.9 13.8 131 471-601 196-343 (639)
207 KOG1538 Uncharacterized conser 97.0 0.076 1.7E-06 53.2 18.1 232 260-531 555-799 (1081)
208 PRK11906 transcriptional regul 97.0 0.044 9.5E-07 53.4 15.8 110 520-631 319-430 (458)
209 PF13281 DUF4071: Domain of un 96.9 0.3 6.5E-06 47.0 21.0 166 440-607 146-339 (374)
210 PF13525 YfiO: Outer membrane 96.9 0.26 5.7E-06 43.8 19.7 55 375-429 15-71 (203)
211 KOG2796 Uncharacterized conser 96.9 0.27 5.9E-06 43.7 23.9 150 451-607 165-320 (366)
212 PF07079 DUF1347: Protein of u 96.9 0.45 9.8E-06 46.0 43.7 84 94-182 16-107 (549)
213 PF13371 TPR_9: Tetratricopept 96.9 0.0026 5.7E-08 45.6 5.6 59 580-639 2-60 (73)
214 PF04840 Vps16_C: Vps16, C-ter 96.9 0.44 9.6E-06 45.4 26.8 109 367-495 179-287 (319)
215 KOG1538 Uncharacterized conser 96.9 0.54 1.2E-05 47.5 22.2 87 434-531 746-843 (1081)
216 KOG2796 Uncharacterized conser 96.8 0.33 7.2E-06 43.2 21.4 131 438-569 180-315 (366)
217 COG1729 Uncharacterized protei 96.8 0.02 4.4E-07 51.4 11.2 103 507-610 144-252 (262)
218 KOG2280 Vacuolar assembly/sort 96.8 0.84 1.8E-05 47.2 33.1 114 362-494 681-794 (829)
219 PF03704 BTAD: Bacterial trans 96.8 0.037 8E-07 46.3 12.4 68 439-507 66-138 (146)
220 COG0457 NrfG FOG: TPR repeat [ 96.8 0.43 9.3E-06 43.7 28.4 226 379-605 37-268 (291)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0048 1E-07 59.7 7.6 102 539-644 74-181 (453)
222 PF03704 BTAD: Bacterial trans 96.7 0.03 6.4E-07 46.9 11.4 57 578-635 67-123 (146)
223 PF13512 TPR_18: Tetratricopep 96.7 0.022 4.7E-07 46.0 9.6 72 541-612 11-86 (142)
224 PF13281 DUF4071: Domain of un 96.6 0.25 5.4E-06 47.6 18.0 166 472-638 143-335 (374)
225 PRK11906 transcriptional regul 96.6 0.034 7.3E-07 54.2 12.2 116 520-637 273-401 (458)
226 COG3898 Uncharacterized membra 96.6 0.68 1.5E-05 43.9 30.7 308 64-394 69-392 (531)
227 COG0457 NrfG FOG: TPR repeat [ 96.6 0.58 1.3E-05 42.8 29.0 219 415-635 38-263 (291)
228 PF04184 ST7: ST7 protein; In 96.6 0.29 6.4E-06 48.0 17.9 104 507-610 261-383 (539)
229 COG4105 ComL DNA uptake lipopr 96.5 0.58 1.3E-05 42.0 18.9 84 47-130 33-117 (254)
230 PF13424 TPR_12: Tetratricopep 96.5 0.0041 8.8E-08 45.3 4.2 25 542-566 7-31 (78)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.03 6.5E-07 54.4 10.9 66 504-569 74-141 (453)
232 PF13424 TPR_12: Tetratricopep 96.4 0.0074 1.6E-07 43.9 5.3 60 507-566 7-72 (78)
233 KOG1941 Acetylcholine receptor 96.4 0.17 3.8E-06 47.1 14.3 232 336-567 12-273 (518)
234 PF10300 DUF3808: Protein of u 96.3 0.3 6.5E-06 49.7 17.8 116 519-635 247-374 (468)
235 COG1729 Uncharacterized protei 96.3 0.056 1.2E-06 48.7 10.9 94 542-637 144-244 (262)
236 KOG2610 Uncharacterized conser 96.3 0.15 3.3E-06 46.9 13.4 149 447-598 115-272 (491)
237 KOG4555 TPR repeat-containing 96.2 0.061 1.3E-06 41.9 9.2 92 514-606 52-148 (175)
238 KOG0543 FKBP-type peptidyl-pro 96.2 0.093 2E-06 49.9 12.3 98 506-604 258-357 (397)
239 PF13428 TPR_14: Tetratricopep 96.2 0.013 2.9E-07 36.7 4.8 34 574-607 2-35 (44)
240 KOG1585 Protein required for f 96.2 0.81 1.8E-05 40.4 16.6 17 582-598 199-215 (308)
241 KOG1941 Acetylcholine receptor 96.1 0.27 5.7E-06 45.9 14.1 229 375-603 16-276 (518)
242 KOG1550 Extracellular protein 96.1 2.3 5E-05 44.6 24.1 249 377-637 261-538 (552)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.6 3.4E-05 42.4 39.3 82 82-166 40-121 (660)
244 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.6 3.5E-05 42.3 32.4 76 54-133 47-123 (660)
245 PF12921 ATP13: Mitochondrial 96.0 0.11 2.4E-06 41.6 10.2 81 83-163 1-97 (126)
246 PF04840 Vps16_C: Vps16, C-ter 96.0 1.5 3.3E-05 41.9 31.4 83 362-460 205-287 (319)
247 KOG4555 TPR repeat-containing 96.0 0.12 2.5E-06 40.4 9.6 90 478-568 51-143 (175)
248 PF08631 SPO22: Meiosis protei 96.0 1.5 3.2E-05 41.4 25.0 101 402-505 86-192 (278)
249 PF13428 TPR_14: Tetratricopep 95.9 0.019 4.2E-07 36.0 4.5 39 542-580 3-42 (44)
250 PF10300 DUF3808: Protein of u 95.9 0.68 1.5E-05 47.2 17.7 115 484-600 247-374 (468)
251 PF08631 SPO22: Meiosis protei 95.8 1.7 3.7E-05 40.9 22.8 102 191-296 86-192 (278)
252 KOG1585 Protein required for f 95.8 0.72 1.6E-05 40.7 14.6 55 299-353 193-250 (308)
253 PF12921 ATP13: Mitochondrial 95.8 0.16 3.4E-06 40.7 10.2 47 432-478 49-96 (126)
254 PF13512 TPR_18: Tetratricopep 95.7 0.63 1.4E-05 37.7 13.2 19 589-607 115-133 (142)
255 PRK11619 lytic murein transgly 95.6 3.8 8.2E-05 43.6 30.0 232 364-601 128-374 (644)
256 KOG1258 mRNA processing protei 95.6 2.9 6.4E-05 42.3 34.1 185 364-554 296-489 (577)
257 KOG2280 Vacuolar assembly/sort 95.6 3.5 7.5E-05 42.9 33.7 126 194-323 442-573 (829)
258 COG2976 Uncharacterized protei 95.6 0.51 1.1E-05 40.2 12.7 57 547-603 133-189 (207)
259 PF06552 TOM20_plant: Plant sp 95.4 0.35 7.7E-06 40.6 11.2 116 521-645 7-144 (186)
260 COG3118 Thioredoxin domain-con 95.4 2.1 4.6E-05 39.3 18.0 142 374-519 143-286 (304)
261 KOG2114 Vacuolar assembly/sort 95.4 4.4 9.6E-05 42.8 26.5 180 83-287 333-516 (933)
262 PF04053 Coatomer_WDAD: Coatom 95.3 0.68 1.5E-05 46.5 15.0 79 226-319 347-425 (443)
263 smart00299 CLH Clathrin heavy 95.2 1.5 3.1E-05 36.3 14.9 83 125-215 13-95 (140)
264 KOG1258 mRNA processing protei 95.2 4.2 9E-05 41.3 36.1 132 153-289 44-179 (577)
265 COG2976 Uncharacterized protei 95.2 1.5 3.2E-05 37.5 14.0 91 546-638 95-189 (207)
266 smart00299 CLH Clathrin heavy 95.1 1.4 3.1E-05 36.4 14.5 82 303-391 14-95 (140)
267 PF07719 TPR_2: Tetratricopept 95.1 0.045 9.8E-07 31.8 4.0 32 574-605 2-33 (34)
268 KOG4234 TPR repeat-containing 95.0 0.25 5.5E-06 41.9 9.1 92 515-606 105-201 (271)
269 PF13431 TPR_17: Tetratricopep 94.9 0.019 4.2E-07 33.4 1.9 32 596-628 2-33 (34)
270 KOG1920 IkappaB kinase complex 94.9 7.6 0.00016 43.0 23.0 154 379-567 894-1053(1265)
271 COG4105 ComL DNA uptake lipopr 94.9 2.8 6.1E-05 37.8 21.8 60 512-571 174-235 (254)
272 KOG3941 Intermediate in Toll s 94.9 0.26 5.7E-06 44.3 9.4 105 398-521 65-174 (406)
273 COG4649 Uncharacterized protei 94.8 2 4.4E-05 35.8 15.2 122 481-602 69-196 (221)
274 PF09613 HrpB1_HrpK: Bacterial 94.7 1.5 3.3E-05 36.3 12.9 109 516-629 21-130 (160)
275 KOG2610 Uncharacterized conser 94.7 3.7 7.9E-05 38.3 16.7 150 378-530 116-272 (491)
276 PF00515 TPR_1: Tetratricopept 94.6 0.059 1.3E-06 31.4 3.5 32 574-605 2-33 (34)
277 KOG3941 Intermediate in Toll s 94.6 0.63 1.4E-05 42.0 11.0 120 79-217 62-187 (406)
278 PF07035 Mic1: Colon cancer-as 94.5 2.5 5.5E-05 35.6 14.4 130 142-287 17-146 (167)
279 TIGR02561 HrpB1_HrpK type III 94.5 1.1 2.4E-05 36.5 11.2 68 506-574 8-78 (153)
280 PF04097 Nic96: Nup93/Nic96; 94.4 4.5 9.7E-05 43.1 19.2 88 372-464 265-356 (613)
281 COG4785 NlpI Lipoprotein NlpI, 94.4 1.5 3.2E-05 38.1 12.4 60 506-566 100-159 (297)
282 KOG1586 Protein required for f 94.3 2.6 5.7E-05 37.1 13.9 121 517-637 85-224 (288)
283 PF04053 Coatomer_WDAD: Coatom 94.1 2 4.3E-05 43.3 14.9 155 376-566 272-428 (443)
284 COG4649 Uncharacterized protei 94.1 3 6.6E-05 34.8 16.0 130 446-575 69-202 (221)
285 PF13431 TPR_17: Tetratricopep 94.0 0.063 1.4E-06 31.3 2.6 24 569-592 9-32 (34)
286 PF09613 HrpB1_HrpK: Bacterial 93.6 1.1 2.3E-05 37.3 9.9 99 539-637 6-122 (160)
287 PF04184 ST7: ST7 protein; In 93.5 2.8 6E-05 41.6 14.0 150 89-254 173-323 (539)
288 PF02259 FAT: FAT domain; Int 93.5 8.3 0.00018 37.9 19.7 113 505-618 146-302 (352)
289 COG3629 DnrI DNA-binding trans 93.1 1.3 2.8E-05 40.9 10.7 77 367-444 155-236 (280)
290 PF10602 RPN7: 26S proteasome 93.1 2.6 5.7E-05 36.3 12.2 65 226-290 36-102 (177)
291 PF09205 DUF1955: Domain of un 93.1 3.6 7.9E-05 32.6 13.9 137 130-293 13-152 (161)
292 PF13170 DUF4003: Protein of u 93.1 8.1 0.00017 36.6 21.3 132 171-304 79-225 (297)
293 COG1747 Uncharacterized N-term 93.0 11 0.00023 37.7 23.4 166 434-606 65-238 (711)
294 PF10602 RPN7: 26S proteasome 92.9 1.3 2.9E-05 38.1 10.1 95 507-601 38-141 (177)
295 COG3629 DnrI DNA-binding trans 92.9 1.3 2.7E-05 41.0 10.3 76 438-514 156-236 (280)
296 PF13176 TPR_7: Tetratricopept 92.8 0.17 3.8E-06 29.9 3.3 24 576-599 2-25 (36)
297 PF13174 TPR_6: Tetratricopept 92.8 0.23 4.9E-06 28.5 3.8 30 576-605 3-32 (33)
298 KOG4234 TPR repeat-containing 92.6 1 2.2E-05 38.4 8.5 92 546-638 101-198 (271)
299 PF09205 DUF1955: Domain of un 92.4 4.6 0.0001 32.1 14.6 63 473-536 89-151 (161)
300 KOG2066 Vacuolar assembly/sort 92.3 17 0.00037 38.4 24.8 104 89-201 361-467 (846)
301 COG1747 Uncharacterized N-term 92.2 14 0.0003 37.0 21.6 163 467-636 63-233 (711)
302 PF13170 DUF4003: Protein of u 92.2 11 0.00023 35.8 18.3 132 135-269 78-225 (297)
303 PF13181 TPR_8: Tetratricopept 92.1 0.26 5.6E-06 28.5 3.4 30 575-604 3-32 (34)
304 KOG4648 Uncharacterized conser 91.9 0.76 1.7E-05 42.6 7.6 53 479-533 106-159 (536)
305 KOG1920 IkappaB kinase complex 91.8 25 0.00054 39.3 19.8 103 515-634 949-1052(1265)
306 PF10345 Cohesin_load: Cohesin 91.8 21 0.00045 38.3 38.9 189 447-636 373-605 (608)
307 KOG1550 Extracellular protein 91.7 20 0.00043 37.8 25.4 246 345-606 264-542 (552)
308 PRK11619 lytic murein transgly 91.4 23 0.00049 38.0 39.3 247 378-642 254-510 (644)
309 PF02259 FAT: FAT domain; Int 91.1 16 0.00035 35.8 25.9 65 434-498 145-212 (352)
310 KOG4570 Uncharacterized conser 91.1 2.9 6.2E-05 38.6 10.2 48 450-497 115-162 (418)
311 PF13929 mRNA_stabil: mRNA sta 91.0 7.9 0.00017 35.7 13.0 146 65-214 113-263 (292)
312 PF07035 Mic1: Colon cancer-as 91.0 8.8 0.00019 32.4 16.0 31 456-486 15-45 (167)
313 PF13176 TPR_7: Tetratricopept 90.9 0.51 1.1E-05 27.8 3.8 22 509-530 3-24 (36)
314 COG4455 ImpE Protein of avirul 90.5 9.4 0.0002 33.5 12.1 76 473-549 4-81 (273)
315 PF08424 NRDE-2: NRDE-2, neces 90.2 18 0.00038 35.0 15.7 164 467-641 16-213 (321)
316 TIGR02561 HrpB1_HrpK type III 90.1 9.3 0.0002 31.3 11.9 51 482-536 22-75 (153)
317 PF04910 Tcf25: Transcriptiona 90.1 20 0.00044 35.1 16.5 94 511-604 109-224 (360)
318 KOG2114 Vacuolar assembly/sort 90.0 30 0.00065 37.0 31.4 212 84-321 283-515 (933)
319 PF08424 NRDE-2: NRDE-2, neces 89.7 20 0.00044 34.6 16.9 133 434-568 18-182 (321)
320 PF00637 Clathrin: Region in C 89.6 0.048 1E-06 45.4 -2.0 54 90-143 13-66 (143)
321 PF14561 TPR_20: Tetratricopep 89.5 3.3 7.1E-05 30.9 7.9 74 561-634 10-85 (90)
322 COG4785 NlpI Lipoprotein NlpI, 89.2 15 0.00032 32.3 16.6 85 378-464 78-162 (297)
323 KOG2063 Vacuolar assembly/sort 89.2 39 0.00084 37.2 24.0 39 374-412 600-638 (877)
324 KOG4507 Uncharacterized conser 89.0 1.7 3.8E-05 43.6 7.7 100 517-617 619-719 (886)
325 PF06552 TOM20_plant: Plant sp 89.0 1.6 3.5E-05 36.8 6.5 80 556-636 7-101 (186)
326 PF13929 mRNA_stabil: mRNA sta 88.7 20 0.00043 33.2 16.1 136 415-550 143-288 (292)
327 KOG0276 Vesicle coat complex C 88.6 3.6 7.8E-05 41.7 9.5 130 156-320 616-745 (794)
328 PF07719 TPR_2: Tetratricopept 88.3 1.6 3.5E-05 25.0 4.6 27 542-568 3-29 (34)
329 COG3947 Response regulator con 88.1 21 0.00047 32.9 15.6 42 416-459 149-190 (361)
330 COG2909 MalT ATP-dependent tra 87.9 44 0.00096 36.2 27.7 224 410-633 425-684 (894)
331 KOG1464 COP9 signalosome, subu 87.3 22 0.00049 32.2 14.8 49 414-462 41-92 (440)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 87.2 3.2 6.8E-05 30.8 6.2 29 501-529 38-66 (103)
333 PF00515 TPR_1: Tetratricopept 87.1 1.4 3E-05 25.4 3.8 19 477-495 8-26 (34)
334 KOG0890 Protein kinase of the 87.0 83 0.0018 38.5 30.2 63 540-603 1670-1732(2382)
335 KOG4642 Chaperone-dependent E3 86.7 9.4 0.0002 34.0 9.9 84 480-566 20-104 (284)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 5.9 0.00013 29.5 7.3 62 345-407 22-83 (103)
337 KOG1464 COP9 signalosome, subu 86.5 25 0.00054 31.9 18.1 26 472-497 193-218 (440)
338 PF02284 COX5A: Cytochrome c o 86.4 6.3 0.00014 29.7 7.4 29 501-529 41-69 (108)
339 KOG4648 Uncharacterized conser 86.3 3.7 8E-05 38.4 7.7 93 443-537 105-197 (536)
340 KOG0545 Aryl-hydrocarbon recep 85.5 17 0.00037 32.5 10.9 73 542-614 232-305 (329)
341 KOG4570 Uncharacterized conser 85.5 13 0.00028 34.6 10.5 59 336-394 106-164 (418)
342 KOG1586 Protein required for f 85.3 27 0.00058 31.2 21.2 18 308-325 166-183 (288)
343 smart00028 TPR Tetratricopepti 85.2 1.9 4.2E-05 23.7 3.9 30 575-604 3-32 (34)
344 PF14853 Fis1_TPR_C: Fis1 C-te 85.1 2.5 5.4E-05 27.6 4.4 32 576-607 4-35 (53)
345 KOG0890 Protein kinase of the 84.9 1.1E+02 0.0023 37.7 36.6 61 505-568 1670-1730(2382)
346 PF04190 DUF410: Protein of un 84.9 24 0.00051 32.8 12.5 143 478-637 18-170 (260)
347 PF11207 DUF2989: Protein of u 84.6 10 0.00022 33.0 9.0 41 519-559 154-197 (203)
348 PF07575 Nucleopor_Nup85: Nup8 84.2 61 0.0013 34.4 18.4 45 333-382 300-344 (566)
349 COG4455 ImpE Protein of avirul 83.9 9.2 0.0002 33.5 8.4 74 194-270 6-81 (273)
350 PHA02875 ankyrin repeat protei 83.8 32 0.0007 34.7 14.4 209 237-470 10-230 (413)
351 PF13374 TPR_10: Tetratricopep 83.8 2.9 6.4E-05 25.3 4.4 27 471-497 3-29 (42)
352 KOG0403 Neoplastic transformat 83.5 48 0.001 32.7 23.1 75 403-482 512-586 (645)
353 COG0790 FOG: TPR repeat, SEL1 83.5 41 0.0009 31.9 21.3 85 412-502 53-145 (292)
354 PF11207 DUF2989: Protein of u 83.2 12 0.00025 32.6 8.9 72 452-524 123-197 (203)
355 PF07721 TPR_4: Tetratricopept 82.4 2 4.3E-05 23.0 2.7 15 580-594 8-22 (26)
356 PF04097 Nic96: Nup93/Nic96; 82.1 77 0.0017 34.0 23.7 26 550-575 515-540 (613)
357 PF02284 COX5A: Cytochrome c o 81.7 21 0.00045 27.1 9.2 62 508-569 11-74 (108)
358 KOG1308 Hsp70-interacting prot 81.5 2.2 4.8E-05 39.9 4.3 88 517-605 126-214 (377)
359 PF04910 Tcf25: Transcriptiona 80.0 64 0.0014 31.7 16.6 90 546-636 109-221 (360)
360 KOG2063 Vacuolar assembly/sort 79.9 1E+02 0.0022 34.1 16.7 89 480-568 601-712 (877)
361 PRK10941 hypothetical protein; 79.8 14 0.0003 34.4 8.9 66 542-607 183-249 (269)
362 PF13174 TPR_6: Tetratricopept 79.7 3 6.6E-05 23.5 3.2 25 544-568 4-28 (33)
363 PF13374 TPR_10: Tetratricopep 79.7 5.2 0.00011 24.1 4.5 26 402-427 4-29 (42)
364 PF00637 Clathrin: Region in C 79.6 1.1 2.5E-05 37.0 1.8 84 126-216 14-97 (143)
365 KOG4642 Chaperone-dependent E3 79.5 11 0.00024 33.6 7.5 102 514-616 19-125 (284)
366 PRK15180 Vi polysaccharide bio 79.5 71 0.0015 31.9 27.1 133 196-333 296-428 (831)
367 KOG2471 TPR repeat-containing 79.0 75 0.0016 31.9 21.5 59 576-635 622-682 (696)
368 KOG3364 Membrane protein invol 78.9 29 0.00064 27.9 8.9 29 578-606 76-104 (149)
369 KOG3364 Membrane protein invol 78.8 14 0.0003 29.7 7.2 67 570-637 29-100 (149)
370 PF10345 Cohesin_load: Cohesin 78.6 1E+02 0.0022 33.2 41.1 186 66-252 39-251 (608)
371 TIGR03504 FimV_Cterm FimV C-te 77.9 5.6 0.00012 24.7 3.9 24 578-601 4-27 (44)
372 PF07575 Nucleopor_Nup85: Nup8 77.6 80 0.0017 33.5 15.0 25 84-109 149-173 (566)
373 PF07163 Pex26: Pex26 protein; 77.2 30 0.00065 31.9 9.7 87 477-563 90-181 (309)
374 PRK09687 putative lyase; Provi 76.8 68 0.0015 30.2 30.8 223 363-606 35-267 (280)
375 PF09670 Cas_Cas02710: CRISPR- 76.0 41 0.00089 33.4 11.5 56 443-499 139-198 (379)
376 KOG0376 Serine-threonine phosp 75.8 4.8 0.0001 39.7 4.9 91 515-606 14-105 (476)
377 PRK09687 putative lyase; Provi 75.7 72 0.0016 30.1 27.4 215 347-583 53-277 (280)
378 KOG4521 Nuclear pore complex, 75.7 62 0.0013 36.3 13.0 124 508-631 986-1125(1480)
379 KOG0276 Vesicle coat complex C 75.2 55 0.0012 33.8 11.8 151 376-566 597-747 (794)
380 PF13181 TPR_8: Tetratricopept 75.1 9.1 0.0002 21.8 4.3 26 472-497 3-28 (34)
381 PF13762 MNE1: Mitochondrial s 75.1 46 0.00099 27.4 9.9 24 87-110 42-65 (145)
382 KOG2066 Vacuolar assembly/sort 73.1 1.4E+02 0.003 32.1 28.7 103 196-308 363-467 (846)
383 PF10579 Rapsyn_N: Rapsyn N-te 72.4 13 0.00028 26.6 5.0 46 517-562 18-65 (80)
384 COG0790 FOG: TPR repeat, SEL1 72.1 91 0.002 29.6 22.4 151 377-536 53-222 (292)
385 KOG4077 Cytochrome c oxidase, 71.5 24 0.00052 27.9 6.7 32 498-529 77-108 (149)
386 PRK12798 chemotaxis protein; R 70.6 1.2E+02 0.0025 30.1 17.3 220 407-636 88-323 (421)
387 TIGR03504 FimV_Cterm FimV C-te 69.9 13 0.00029 23.1 4.2 20 513-532 7-26 (44)
388 PF13762 MNE1: Mitochondrial s 69.8 62 0.0013 26.7 10.1 93 110-202 28-128 (145)
389 PRK10941 hypothetical protein; 68.2 32 0.00069 32.1 8.2 59 578-637 186-244 (269)
390 TIGR02508 type_III_yscG type I 67.5 52 0.0011 24.9 8.2 59 408-473 47-105 (115)
391 KOG3824 Huntingtin interacting 67.2 12 0.00027 34.5 5.1 60 515-575 126-186 (472)
392 COG3947 Response regulator con 66.7 1.1E+02 0.0024 28.5 17.4 58 230-288 283-340 (361)
393 KOG4507 Uncharacterized conser 66.7 22 0.00048 36.3 7.1 100 481-581 618-718 (886)
394 KOG2396 HAT (Half-A-TPR) repea 65.9 1.6E+02 0.0034 29.9 39.0 241 386-636 303-558 (568)
395 PF09986 DUF2225: Uncharacteri 65.7 11 0.00025 33.6 4.7 26 578-603 170-195 (214)
396 PF10366 Vps39_1: Vacuolar sor 64.3 53 0.0011 25.5 7.5 27 542-568 41-67 (108)
397 PF14689 SPOB_a: Sensor_kinase 64.0 11 0.00023 25.7 3.3 22 578-599 28-49 (62)
398 KOG2471 TPR repeat-containing 62.7 1.8E+02 0.0039 29.5 15.5 41 238-278 29-69 (696)
399 KOG0545 Aryl-hydrocarbon recep 62.7 97 0.0021 28.1 9.5 59 578-637 235-293 (329)
400 KOG1308 Hsp70-interacting prot 62.5 3.1 6.7E-05 39.0 0.6 91 550-641 124-215 (377)
401 KOG2062 26S proteasome regulat 62.3 2.3E+02 0.0049 30.5 35.7 118 481-601 512-634 (929)
402 cd00280 TRFH Telomeric Repeat 61.8 76 0.0016 27.3 8.3 53 521-573 85-144 (200)
403 PF11848 DUF3368: Domain of un 61.4 32 0.0007 21.9 4.9 33 95-127 13-45 (48)
404 PF10579 Rapsyn_N: Rapsyn N-te 60.9 22 0.00047 25.5 4.3 56 51-106 9-65 (80)
405 PF14853 Fis1_TPR_C: Fis1 C-te 60.5 27 0.00058 22.9 4.5 30 544-573 5-35 (53)
406 PF09670 Cas_Cas02710: CRISPR- 60.4 1.5E+02 0.0032 29.5 11.8 56 478-534 139-198 (379)
407 PF11846 DUF3366: Domain of un 60.2 31 0.00067 30.3 6.5 33 116-148 141-173 (193)
408 cd08819 CARD_MDA5_2 Caspase ac 60.1 67 0.0014 23.7 7.0 16 552-567 48-63 (88)
409 COG4976 Predicted methyltransf 59.6 18 0.00039 32.1 4.5 53 515-568 5-57 (287)
410 PHA02875 ankyrin repeat protei 59.5 2E+02 0.0044 29.0 15.0 11 200-210 76-86 (413)
411 KOG2062 26S proteasome regulat 59.5 2.5E+02 0.0055 30.1 36.4 255 375-636 367-634 (929)
412 PF09986 DUF2225: Uncharacteri 58.3 1.4E+02 0.003 26.8 11.5 65 510-574 123-199 (214)
413 cd08819 CARD_MDA5_2 Caspase ac 57.7 74 0.0016 23.4 7.7 66 489-560 21-86 (88)
414 PF07720 TPR_3: Tetratricopept 56.0 31 0.00068 20.3 3.9 19 577-595 5-23 (36)
415 KOG3824 Huntingtin interacting 55.9 24 0.00052 32.8 4.9 63 550-612 126-189 (472)
416 TIGR02508 type_III_yscG type I 55.5 90 0.0019 23.7 7.3 8 448-455 52-59 (115)
417 cd00280 TRFH Telomeric Repeat 55.0 1.2E+02 0.0025 26.2 8.3 49 485-533 84-139 (200)
418 PF07163 Pex26: Pex26 protein; 55.0 1.8E+02 0.0039 27.1 12.6 12 63-74 50-61 (309)
419 PHA02537 M terminase endonucle 53.4 98 0.0021 28.0 8.3 22 585-606 190-211 (230)
420 KOG2659 LisH motif-containing 53.3 1E+02 0.0022 27.6 8.2 113 500-614 21-144 (228)
421 PF14689 SPOB_a: Sensor_kinase 52.9 44 0.00095 22.7 4.8 20 477-496 30-49 (62)
422 KOG1811 Predicted Zn2+-binding 52.6 1.1E+02 0.0023 31.6 9.1 55 550-606 566-620 (1141)
423 PF13934 ELYS: Nuclear pore co 52.5 1.8E+02 0.0039 26.3 15.2 103 473-584 79-183 (226)
424 PF11817 Foie-gras_1: Foie gra 52.2 49 0.0011 30.5 6.6 23 578-600 183-205 (247)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 51.5 1.3E+02 0.0027 24.2 8.5 44 207-251 81-124 (126)
426 KOG4077 Cytochrome c oxidase, 51.0 1.3E+02 0.0027 24.1 9.6 49 346-394 65-113 (149)
427 PF14561 TPR_20: Tetratricopep 50.7 1E+02 0.0022 22.9 8.6 39 529-568 12-50 (90)
428 PF11846 DUF3366: Domain of un 50.6 75 0.0016 27.9 7.4 31 467-497 141-171 (193)
429 PRK12798 chemotaxis protein; R 50.0 2.8E+02 0.006 27.7 19.6 187 95-290 92-286 (421)
430 COG5159 RPN6 26S proteasome re 49.8 2.2E+02 0.0048 26.5 22.2 19 441-459 131-149 (421)
431 PF12862 Apc5: Anaphase-promot 49.2 95 0.0021 23.2 6.7 21 513-533 49-69 (94)
432 PF04762 IKI3: IKI3 family; I 49.0 4.6E+02 0.01 30.0 14.9 133 484-633 792-926 (928)
433 KOG0551 Hsp90 co-chaperone CNS 48.7 1.4E+02 0.003 28.6 8.5 96 472-568 83-181 (390)
434 PF04190 DUF410: Protein of un 48.5 2.3E+02 0.005 26.4 18.8 26 333-358 144-169 (260)
435 smart00386 HAT HAT (Half-A-TPR 48.2 46 0.00099 18.2 4.0 13 521-533 3-15 (33)
436 KOG0530 Protein farnesyltransf 48.0 2.3E+02 0.0049 26.2 12.6 124 480-606 53-180 (318)
437 COG5187 RPN7 26S proteasome re 47.9 2.4E+02 0.0052 26.4 12.7 68 225-292 114-186 (412)
438 PF11848 DUF3368: Domain of un 47.9 71 0.0015 20.3 5.1 26 484-509 16-41 (48)
439 KOG0991 Replication factor C, 47.8 2.2E+02 0.0047 25.8 12.8 73 359-434 188-272 (333)
440 COG0735 Fur Fe2+/Zn2+ uptake r 47.3 94 0.002 25.8 6.9 62 492-554 8-69 (145)
441 PF12862 Apc5: Anaphase-promot 46.9 94 0.002 23.3 6.4 25 578-602 46-70 (94)
442 KOG2659 LisH motif-containing 46.9 2.1E+02 0.0045 25.8 9.0 96 433-530 24-128 (228)
443 KOG4814 Uncharacterized conser 46.4 1.7E+02 0.0037 30.7 9.5 86 516-602 365-457 (872)
444 KOG2034 Vacuolar sorting prote 45.6 4.6E+02 0.01 29.0 26.6 47 231-286 509-555 (911)
445 KOG0530 Protein farnesyltransf 45.5 2.5E+02 0.0054 25.9 19.4 203 412-618 55-269 (318)
446 KOG4567 GTPase-activating prot 45.4 2.7E+02 0.0059 26.3 10.3 42 456-497 264-305 (370)
447 PF10155 DUF2363: Uncharacteri 44.7 1.6E+02 0.0036 23.6 11.9 53 62-121 3-55 (126)
448 KOG0687 26S proteasome regulat 44.5 2.9E+02 0.0063 26.4 15.1 97 436-534 105-210 (393)
449 PF00244 14-3-3: 14-3-3 protei 44.5 1.4E+02 0.0031 27.2 8.2 57 406-462 7-64 (236)
450 COG2909 MalT ATP-dependent tra 43.8 4.9E+02 0.011 28.8 43.0 224 307-530 426-684 (894)
451 KOG4814 Uncharacterized conser 43.6 1.4E+02 0.0031 31.3 8.5 93 473-568 358-456 (872)
452 KOG0292 Vesicle coat complex C 43.5 1.1E+02 0.0025 33.3 8.0 132 481-640 654-785 (1202)
453 KOG0376 Serine-threonine phosp 43.2 26 0.00057 34.9 3.4 89 546-635 10-99 (476)
454 KOG2297 Predicted translation 43.0 3E+02 0.0064 26.1 16.3 141 65-246 184-341 (412)
455 PF04762 IKI3: IKI3 family; I 41.9 5.9E+02 0.013 29.2 16.1 51 62-112 708-761 (928)
456 KOG4279 Serine/threonine prote 41.8 4.6E+02 0.01 28.4 11.8 19 620-638 378-396 (1226)
457 COG5108 RPO41 Mitochondrial DN 41.3 2.3E+02 0.0049 30.0 9.5 90 405-497 33-130 (1117)
458 COG5108 RPO41 Mitochondrial DN 40.7 2.2E+02 0.0047 30.1 9.3 48 159-206 33-82 (1117)
459 KOG2908 26S proteasome regulat 40.3 3.5E+02 0.0075 26.1 15.7 76 203-278 89-174 (380)
460 PF15297 CKAP2_C: Cytoskeleton 40.1 1.7E+02 0.0036 28.3 7.9 64 556-619 119-186 (353)
461 PF12926 MOZART2: Mitotic-spin 40.1 1.5E+02 0.0032 21.8 7.8 43 105-147 29-71 (88)
462 KOG0991 Replication factor C, 39.9 2.9E+02 0.0063 25.1 12.5 40 175-216 180-219 (333)
463 COG4259 Uncharacterized protei 39.7 1.7E+02 0.0036 22.2 6.6 39 527-565 59-97 (121)
464 COG0735 Fur Fe2+/Zn2+ uptake r 39.6 1.4E+02 0.0031 24.7 6.8 26 160-185 26-51 (145)
465 PF10366 Vps39_1: Vacuolar sor 39.3 1.8E+02 0.004 22.6 8.4 26 122-147 42-67 (108)
466 PRK10564 maltose regulon perip 39.2 72 0.0016 30.0 5.4 30 473-502 260-289 (303)
467 KOG2297 Predicted translation 39.1 3.4E+02 0.0074 25.7 17.1 21 400-420 321-341 (412)
468 KOG0686 COP9 signalosome, subu 38.6 4.1E+02 0.0089 26.4 16.4 65 226-290 150-216 (466)
469 KOG3636 Uncharacterized conser 38.5 4.2E+02 0.0091 26.5 14.4 85 499-584 177-271 (669)
470 PF06855 DUF1250: Protein of u 38.2 43 0.00094 21.1 2.7 41 71-111 2-42 (46)
471 KOG2422 Uncharacterized conser 38.2 4.9E+02 0.011 27.2 17.0 155 413-568 251-447 (665)
472 KOG2582 COP9 signalosome, subu 38.2 3.9E+02 0.0085 26.1 20.1 85 49-141 39-124 (422)
473 PF11817 Foie-gras_1: Foie gra 38.2 1.6E+02 0.0034 27.2 7.6 53 476-528 184-241 (247)
474 KOG1839 Uncharacterized protei 38.1 3.8E+02 0.0081 31.1 11.3 154 479-632 941-1123(1236)
475 PRK07003 DNA polymerase III su 38.0 5.1E+02 0.011 28.6 11.9 118 45-166 160-291 (830)
476 PF04781 DUF627: Protein of un 37.8 2E+02 0.0043 22.5 7.5 38 591-629 62-99 (111)
477 KOG0551 Hsp90 co-chaperone CNS 37.5 2.4E+02 0.0053 27.0 8.4 90 440-531 86-179 (390)
478 PF12926 MOZART2: Mitotic-spin 37.1 1.7E+02 0.0037 21.5 7.7 43 526-568 29-71 (88)
479 PF11663 Toxin_YhaV: Toxin wit 36.7 46 0.001 26.8 3.2 21 449-469 109-129 (140)
480 PRK10564 maltose regulon perip 36.4 81 0.0018 29.6 5.3 32 226-257 257-288 (303)
481 KOG0686 COP9 signalosome, subu 36.4 4.4E+02 0.0096 26.2 13.9 25 156-180 152-176 (466)
482 KOG4567 GTPase-activating prot 36.2 2.1E+02 0.0045 27.1 7.6 73 174-253 263-345 (370)
483 TIGR02710 CRISPR-associated pr 35.9 4.5E+02 0.0097 26.1 11.7 52 444-495 139-196 (380)
484 COG2912 Uncharacterized conser 35.9 1.7E+02 0.0037 27.1 7.2 64 544-607 185-249 (269)
485 PRK13341 recombination factor 35.5 6.5E+02 0.014 27.8 18.0 110 257-379 193-307 (725)
486 PF09477 Type_III_YscG: Bacter 34.5 2.2E+02 0.0048 22.1 8.5 81 413-500 19-99 (116)
487 COG4941 Predicted RNA polymera 34.4 4.3E+02 0.0094 25.5 11.7 121 485-608 271-400 (415)
488 PF15297 CKAP2_C: Cytoskeleton 34.2 3E+02 0.0066 26.6 8.6 63 452-516 120-186 (353)
489 COG4976 Predicted methyltransf 33.8 58 0.0013 29.1 3.7 60 549-608 4-64 (287)
490 PF02607 B12-binding_2: B12 bi 33.7 1.2E+02 0.0027 21.5 5.1 42 334-375 5-46 (79)
491 KOG2581 26S proteasome regulat 33.0 5E+02 0.011 25.8 12.5 134 435-568 124-275 (493)
492 PF00244 14-3-3: 14-3-3 protei 32.7 3.9E+02 0.0085 24.4 10.4 40 125-164 7-46 (236)
493 PF09454 Vps23_core: Vps23 cor 32.6 1E+02 0.0023 21.2 4.1 30 401-430 9-38 (65)
494 KOG4121 Nuclear pore complex, 32.6 3.1E+02 0.0066 30.8 9.3 22 476-497 778-799 (1128)
495 COG5191 Uncharacterized conser 32.3 1.3E+02 0.0029 28.3 5.8 74 504-578 106-181 (435)
496 PRK11639 zinc uptake transcrip 32.0 2.9E+02 0.0062 23.7 7.7 45 159-203 30-74 (169)
497 KOG2582 COP9 signalosome, subu 31.8 5E+02 0.011 25.4 16.1 128 363-498 73-211 (422)
498 PF10516 SHNi-TPR: SHNi-TPR; 31.6 1.1E+02 0.0024 18.4 3.6 28 575-602 3-30 (38)
499 PRK11639 zinc uptake transcrip 31.5 2E+02 0.0044 24.6 6.7 58 77-135 19-76 (169)
500 PRK08691 DNA polymerase III su 31.5 7.2E+02 0.016 27.2 13.3 32 156-188 248-279 (709)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-74 Score=624.88 Aligned_cols=571 Identities=16% Similarity=0.128 Sum_probs=476.3
Q ss_pred Hhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 54 RVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 54 ~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
.++..+.+ +.++.|+++|+.+. ..|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.||.+|++.
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 34444433 34566666666663 33666666666666666666666666666666666666667777777777777888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHH
Q 006281 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (652)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 212 (652)
|+++.|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++
T Consensus 236 g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 88888888888775 35777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006281 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (652)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 292 (652)
..+.+. |.. ++..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|++++|+++|++|.+.|+
T Consensus 312 ~~~~~~-g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 312 GYVVKT-GFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHh-CCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 888776 544 4477888888888888888888888888763 5778888888888888888888888888888888
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (652)
Q Consensus 293 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (652)
.||..||+.++.+|++.|+++.+.++++.+.+.|..++..++|+++..|.+ |++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 888888888888888888888888888888888888888888888887765 688888888888754 466788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
+.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+.+|++.|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 8888888888888888888875 477888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
++|.++|+.+ .||..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 8888888876 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 532 V-NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 532 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
. ..++.|+..+|+.++.+|++.|++++|.+++++|+-. +++..|.+|+.+|..+|+.+.+....+++.+..|++. ..
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~ 693 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV-GY 693 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-ch
Confidence 9 6899999999999999999999999999999999753 5678899999999999999999999999999999875 44
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
|..|...|...|+|++|.++.+.|+++|++++||.++
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 5558899999999999999999999999999999876
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-71 Score=607.34 Aligned_cols=573 Identities=17% Similarity=0.156 Sum_probs=430.9
Q ss_pred CCHHHHHHhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
.++...+.++..+.+ +.+..|+.+|+.+ ...|+.|+..+|..++++|.+.+....+.+++..+.+.+..++...++.+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 445555666666555 5688999999988 45678889999999988888888888888888888888888888888888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 205 (652)
+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 888888888888888888885 4578888888888888888888888888888888888888888888888877888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285 (652)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 285 (652)
+.+.+++..+.+. |.. ++..+++.|+.+|++.|++++|.++|++|.. ||..+||+++.+|++.|++++|+++|+
T Consensus 204 ~~~~~~~~~~~~~-g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 204 ARGREVHAHVVRF-GFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred hhHHHHHHHHHHc-CCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888777776 544 3467777788888888888888888877763 577778888888888888888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCC
Q 006281 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 286 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~ 364 (652)
+|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|..+|..+||.++..|.+ |++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 8877788888888888888888888888888888877777777777778877777665 67777777777774 356
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+
T Consensus 434 y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 777777777777777775 45667777777777777777777777777765 4777777777777777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+++..+++.++.++..+++.++.+|++.|++++|.++|+.+ .++..+|+.++.+|.+.|+.++|++++++|.+.+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777776666666666666666666666666666666665 33455666666666666666666666666666555
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHH-HcccccC
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQ-EKCLDSE 642 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~~~ 642 (652)
.++...|+.++.+|.+.|++++|.+++++|. +.|+.|+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 5555556666666666666666666666665 3455443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-68 Score=564.23 Aligned_cols=516 Identities=17% Similarity=0.195 Sum_probs=472.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (652)
.++...|..++..|.+.|+++.|.++|++|.+.|+ +++..+++.++.+|.+.|.+++|.++|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677889999999999999999999999999985 57788888999999999999999999999964 89999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHcc
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (652)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |..| +..+|+.+|.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999987 6544 589999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHccCCHHHHHH
Q 006281 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK--LGVAPRTNDYREFILGLIVERRICEAKE 317 (652)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 317 (652)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006281 318 LGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396 (652)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 396 (652)
+|+.|.+.++.++..+|+.++..|++ |++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998775 79999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----C-------------------CCHHHHHHHHHHhhh
Q 006281 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----E-------------------TNLQAAFEVFNKSVN 533 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 533 (652)
+.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876532 1 123568888888888
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL--GHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.|+.||..+|..++.++++.+..+.+..+++.+...+ ++...|..++.++.+. .++|..++++|...+.
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 8888888888888877777888888888888776533 3445677788776322 3578888888887654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-67 Score=561.09 Aligned_cols=512 Identities=17% Similarity=0.173 Sum_probs=478.5
Q ss_pred HHHHhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 006281 51 LVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (652)
Q Consensus 51 ~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (652)
....++..+.+ ++...|+++|+++.+..-+.++..+++.++.+|.+.|..+.|..+++.|.. |+..+|+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 33444444443 568999999999976655678889999999999999999999999999975 9999999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHH
Q 006281 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (652)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 209 (652)
++.|+++.|.++|+.|.+.|+.||..+||.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhh--CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
++|+.|... |..|+ ..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 528 ~lf~~M~~~-Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 528 GAYGIMRSK-NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999987 76554 89999999999999999999999999976 679999999999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHH
Q 006281 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLS 366 (652)
Q Consensus 288 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~ 366 (652)
.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+.|..||..+|+.++..|.+ |+.++|.+++++|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999776 79999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCC
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V-------------------GEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p 503 (652)
+.|++++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|++.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999876432 1 22467999999999999999
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (652)
|..||+.++.++++.+..+.+..+++++...+..|+..+|+.+++++.+. .++|..++++|....
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999999998889999999999999988888888999999999998432 468999999998743
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8e-64 Score=532.67 Aligned_cols=480 Identities=16% Similarity=0.171 Sum_probs=392.5
Q ss_pred CHHhHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH
Q 006281 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 118 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 196 (652)
+...|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666666666666666665432 45566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 276 (652)
.+|++.|+++.|.++|++|.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 666666666666666666542 24566777777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (652)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m 356 (652)
.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------------------------------- 286 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--------------------------------- 286 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------
Confidence 88888888888888888888888888888888888877777766542
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 347788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
+|++|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 57889999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhh-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVN-HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
+.|++++|.++|++|.+ .++.|+..+|+.++++|++.|++++|.+++++++.. ++...|..++.+|...|+++.|...
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999976 588899999999999999999999999999988654 4566788999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
++++.+..|+.. ..|..++.+|++.|++++|.+++++|+++|+++.||..+
T Consensus 517 ~~~l~~~~p~~~-~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 517 AEKLYGMGPEKL-NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHhCCCCCCC-cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 999998888753 456669999999999999999999999999999999765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.5e-62 Score=517.56 Aligned_cols=471 Identities=15% Similarity=0.178 Sum_probs=283.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
.+..+|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666667777777776666543 4566666777777776666666666777666666666666677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC
Q 006281 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (652)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 240 (652)
+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |..| +..+|+.++.++++.|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCC
Confidence 7777777777777777766643 56666777777777777777777777766655 4333 3566666666666666
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (652)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (652)
+.+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666666666666677777777777777777777766664 2456666666666666666555544433
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 315 ----------------------------------~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 315 ----------------------------------EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ----------------------------------HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 3333444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.+|+.|+.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 555555555555555555555555553 2455555555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 481 SEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|+.++.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 555555555555555543 355555555555555555555555555555443 3445555555555555555555555
Q ss_pred HHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 560 TKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 560 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.++++++.. .|.+...|..++.+|.+.|++++|.+++++|.+.+
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 555555544 33344455555555555555555555555555543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-34 Score=321.49 Aligned_cols=556 Identities=11% Similarity=0.011 Sum_probs=301.5
Q ss_pred ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHH
Q 006281 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 140 (652)
.++...|...|+.+....+ .+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+.+.|++++|.+
T Consensus 308 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666544322 234444555555556666666666666655543 3445555555666666666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---------------------------------cc
Q 006281 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV---------------------------------EF 187 (652)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------------------------------~~ 187 (652)
+|+++...... +...+..+...+...|++++|...|+.+.+.+. +.
T Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 463 (899)
T TIGR02917 385 YLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 66655544221 334445555555555555555555555544321 22
Q ss_pred CcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 006281 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (652)
Q Consensus 188 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (652)
+..++..+...+...|++++|.+.|+++.+. .|.+...+..+...+...|++++|.+.|+.+.... +.+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3344444444555555555555555555443 33334444444555555555555555555554432 1234445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCCh
Q 006281 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDP 346 (652)
Q Consensus 268 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 346 (652)
...+.+.|+.++|...++++.+.+. .+...+..+...+...|++++|..+++.+.+.. +.+...|..+...+ ..|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544321 122334445555555555555555555554432 22333344433332 23555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
++|+..|+.+.+.. +.+...+..+...+...|++++|..+++.+.+.... +..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665555432 123444555555555566666666666655554322 4455555556666666666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006281 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (652)
Q Consensus 427 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 506 (652)
.+.+. .+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++.+.+... .+..
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~ 771 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAV 771 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 55432 244555555556666666666666666665542 3335555566666666666666666666665432 2455
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...|...|++++|.+.|+++++..+. ++.++..++..+...|+ .+|+.+++++.. .|.++..+..++.++..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5666666666666666666666666665543 55566666666666666 556666666655 44455555566666666
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.|++++|++.++++.+.+|.. ..++..++.++.+.|++++|.+++++|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666777777777766666664 3334346666666777777766666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-33 Score=318.00 Aligned_cols=566 Identities=10% Similarity=-0.002 Sum_probs=372.7
Q ss_pred hhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 55 VINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 55 ~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
....+..++++.|+..|+.+.+...- +...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 344 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPE--YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR 344 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 33334567899999999988654321 23344455667789999999999999998875 5567788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
+++|...++.+..... .+...++.+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|.+.++.
T Consensus 345 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 345 VDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 9999999999987653 3677899999999999999999999999987642 2445566666677777888888888877
Q ss_pred HHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006281 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (652)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (652)
+... .|........++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|...|+++.+... .
T Consensus 423 a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 497 (899)
T TIGR02917 423 AAQL---DPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-D 497 (899)
T ss_pred HHhh---CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C
Confidence 7765 3333444445555566666666666666665543 223445555556666666666666666655544321 1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCC---------------------------------CCHHHHHHHHHH-
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFT---------------------------------IDDDVLNALIGS- 340 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~- 340 (652)
+...+..+...+...|++++|.+.++.+....+. .+...+..+...
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 2223334444444555555555555554443221 112222222222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+.... +...+..+..++...|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 22355555665555555432 234555666666666666666666666666554332 4455666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
.+|+++.+... .+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|+.+.+.+
T Consensus 656 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 66666665432 245566666666666666777776666666654 4556666667777777777777777777777543
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
|+..++..+..++.+.|++++|.+.++++++..+. +...+..++..|...|++++|.+.++++.+ .|.++..+..+
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456666777777777777777777777766654 666777777777778888888888877766 55566667777
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
++.+...|+ .+|++.++++.+..|+++.. +..++.++...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAI-LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777 77888888887777776443 44478888888888888888888887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-26 Score=259.16 Aligned_cols=588 Identities=11% Similarity=0.059 Sum_probs=421.4
Q ss_pred HHHHHhhcCCCCCCCHHHHHHhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHH--------------HHHHHHHHHhcC
Q 006281 34 LEQTLHQLGLRDSLSPSLVARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLS--------------YHSILKSLSLSR 98 (652)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~--------------~~~ll~~~~~~~ 98 (652)
..+.|.++-.-.+-.|+.+........ .++.+.|...++.+.+...-.+.... .....+.+...|
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 344555554333445666655444433 46788999998888654432222111 123344678899
Q ss_pred ChhHHHHHHHHHHhCCCccCHHh-HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 006281 99 QINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177 (652)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 177 (652)
++++|.+.|+.+.+.+ +++... ...........|+.++|++.++++....+. +...+..+...+...|+.++|+..+
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 444322 111222233468999999999999887433 5667888999999999999999999
Q ss_pred HHHHhCCC------------------c--------------cCcccHH---------------------HHHHHHHhcCc
Q 006281 178 DEMSHRGV------------------E--------------FSTIGFG---------------------VFIWKFCENAK 204 (652)
Q Consensus 178 ~~m~~~~~------------------~--------------~~~~~~~---------------------~ll~~~~~~g~ 204 (652)
+++.+... . |+..... .....+...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 98754321 0 1110000 11223456688
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc-CHHHHH------------HHHHHH
Q 006281 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYR------------IVAEEF 271 (652)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ll~~~ 271 (652)
+++|+..|++..+. .|.+..++..+..++.+.|++++|...|++..+..... +...|. .....+
T Consensus 285 ~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 285 GGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999988877 67777888888888899999999999998887653221 111121 223456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHH
Q 006281 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351 (652)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 351 (652)
.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+.+.+.... +...+..+...+..++.++|+.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHH
Confidence 778899999999988887532 23445566777888889999999999888876533 3344555555566667888888
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 352 FFNFMIEKGRV--------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (652)
Q Consensus 352 ~~~~m~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 423 (652)
+++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...|.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87765332110 01123445566788899999999999999887654 6677888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHH
Q 006281 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK---------TYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 424 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
+++.+.... +...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++|.++++
T Consensus 519 ~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 998876322 44445555556678899999999988765432222221 22345667888999999999987
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
. ..++...+..+...+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++.+.. .|.++
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 2 2345667788889999999999999999999998876 788899999999999999999999999887 45666
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ-----EISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
..+..++.++...|++++|++.++++.+..|..+. .++..++..+...|++++|++.+++...
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788999999999999999999999987665433 4556678889999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.8e-25 Score=248.86 Aligned_cols=571 Identities=9% Similarity=0.019 Sum_probs=363.8
Q ss_pred HHHhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH---------
Q 006281 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY--------- 122 (652)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 122 (652)
+.++---...++.+.|.+.+..+..... -++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 3333333345678899999998865433 357778888999999999999999999999876 3333322
Q ss_pred -------HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHH
Q 006281 123 -------RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (652)
Q Consensus 123 -------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (652)
..+.+.+...|++++|++.|+.+...... +.. ............|+.++|+..|+++.+... -+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 33445788999999999999999866322 322 111122222345899999999999998742 24566777
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCC-----------------CCCchhhHH---------------------------
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENS-----------------MINGSVIAV--------------------------- 230 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~~--------------------------- 230 (652)
+...+...|+.++|+..++++...... .+.....+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 888888899999999999998654100 000000010
Q ss_pred -------HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhH---
Q 006281 231 -------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT-NDY--- 299 (652)
Q Consensus 231 -------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~--- 299 (652)
.....+...|++++|+..|++..+... .+...+..+..++.+.|++++|+..|++..+....... ..+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 112334455666666666666655421 14555566666666666666666666665553321110 111
Q ss_pred ---------HHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006281 300 ---------REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369 (652)
Q Consensus 300 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (652)
......+.+.|++++|...++.+....+. +...+..+- .....|++++|++.|++..+... .+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 01122344556666666666666655332 222222222 22334566666666666655432 1233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSANDYF--------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4444442 34556666555443221100 00112344555666777777888877777766432 45566667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---------hHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---------TYTSLL 512 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~ 512 (652)
...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 777777788888888887777643 3344455555555666777777777777654322222211 123445
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|+.++|.++++. .+ .++..+..+...+.+.|++++|++.++++.+ +|.++..+..++.++...|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 667788888888888772 22 3566778899999999999999999999987 78888899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
|++.++++.+..|+.... ...++.++...|++++|.++++++.....
T Consensus 656 A~~~l~~ll~~~p~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNT-QRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHhccCCCChHH-HHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999999999988877544 44488899999999999999999887643
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-23 Score=222.85 Aligned_cols=557 Identities=10% Similarity=0.007 Sum_probs=393.2
Q ss_pred HHHhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHc
Q 006281 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131 (652)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 131 (652)
+........+++++.|+..|+.+.+... -+..++..+.+++.+.|++++|+..+++..+.. |+...|..++..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i-- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh--
Confidence 3444444456889999999999865443 247778999999999999999999999999975 4444444433333
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCccCcccHHHH-HHHHHhc
Q 006281 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVF-IWKFCEN 202 (652)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 202 (652)
+++.+|..+++++....+. +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|.+.
T Consensus 122 -~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred -ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 8899999999999887433 44555555554 5555 55555555 3333344455555555 8899999
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
|++++|++++.++.+. .+.+......|..+|.. .++ +.+..+++. .++-|...+..+...|.+.|+.++|.
T Consensus 196 ~dw~~Ai~lL~~L~k~---~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 KQWSQADTLYNEARQQ---NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred hCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999988 55656666777778887 466 888877553 23358888999999999999999999
Q ss_pred HHHHHHHhcCCC-CChhhHH------------------------------HHHHHHHccCCHHHHHHHHH----------
Q 006281 282 VVLKKKRKLGVA-PRTNDYR------------------------------EFILGLIVERRICEAKELGE---------- 320 (652)
Q Consensus 282 ~~~~~~~~~~~~-p~~~~~~------------------------------~ll~~~~~~~~~~~a~~~~~---------- 320 (652)
.+++++...-.. |+..++. .++..+.+.++++.+.++.+
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999886543211 2221111 11334445555554444421
Q ss_pred -------------------HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcC
Q 006281 321 -------------------VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-G-RVPTLSTLSNLSKNLCKRN 379 (652)
Q Consensus 321 -------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l~~~~~~~~ 379 (652)
.+.+..........-+.......|+.++|..+|...... + ..++......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 111110111111122222334567888888888887662 1 2334445557777777666
Q ss_pred Ch---HHHHHH----------------------HHHHHhC-CC-Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006281 380 KS---DELVEV----------------------YKVLSAN-DY-FT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (652)
Q Consensus 380 ~~---~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 430 (652)
.. ..+..+ ++..... +. ++ +...|..+..++.. ++.++|+..+.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 52 222222 1111111 11 23 56677888888776 7888999988887766
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 006281 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510 (652)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 510 (652)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++.++.... +...+..
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~ 581 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWW 581 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 466554444455556899999999999998654 455566777788889999999999999999876422 3333434
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV 589 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 589 (652)
+...+...|++++|...++++++..+ +...+..+..++.+.|++++|++.++++.. +|.++..+..++.++...|++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 44455567999999999999988776 477888999999999999999999999988 778888888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 590 EMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++|++.++++.+..|++....++ ++.++...|++++|+..+++..+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~n-LA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQ-LAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999988655555 999999999999999999988765
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.1e-20 Score=202.01 Aligned_cols=571 Identities=11% Similarity=0.016 Sum_probs=400.8
Q ss_pred CHHHHHHhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 006281 48 SPSLVARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (652)
Q Consensus 48 ~~~~~~~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (652)
++.+...+...+. .++.+.|+..++.+.+.. |+...|..++..+ +++.+|..+++++.+.. +-+..++..+.
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la 149 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRC 149 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHH
Confidence 3555544444433 366889999998876543 4444444444333 99999999999999986 45566666666
Q ss_pred HH--------HHcCCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHH
Q 006281 127 PS--------LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL-LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197 (652)
Q Consensus 127 ~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 197 (652)
.. |.+. +.|.+.++ .......|++.+.... ...|.+.|+++.|+.++.++.+.+.. +..-...+-.
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 65 5555 44555554 3333344445544444 89999999999999999999998643 3444555666
Q ss_pred HHHh-cCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-cCHHHHH----------
Q 006281 198 KFCE-NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYR---------- 265 (652)
Q Consensus 198 ~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~---------- 265 (652)
+|.. .++ +.+..+++.. ...+..+...++..|.+.|+.++|.++++++...-.. |+..+|-
T Consensus 225 ay~q~l~~-~~a~al~~~~------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~ 297 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQG------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP 297 (987)
T ss_pred HHHHhhCH-HHHHHHhchh------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch
Confidence 7777 366 7777775431 2256788889999999999999999999987643211 2222221
Q ss_pred --------------------HHHHHHHhcCCHHHHHHHHHH--------HHhcCCC-------------------C-Chh
Q 006281 266 --------------------IVAEEFKLMGSVFEREVVLKK--------KRKLGVA-------------------P-RTN 297 (652)
Q Consensus 266 --------------------~ll~~~~~~g~~~~a~~~~~~--------~~~~~~~-------------------p-~~~ 297 (652)
.++..+.+.++++.++++... +...+.. | +..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 377 (987)
T PRK09782 298 VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLT 377 (987)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH
Confidence 124455566666655555321 0001110 1 222
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHhcC----ChhHHHHH-------------------
Q 006281 298 DYREFILGLIVERRICEAKELGEVIVSGK--FTIDDDVLNALIGSVSSI----DPRSAIVF------------------- 352 (652)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~----~~~~a~~~------------------- 352 (652)
....+-....+.|+.++|.++++...... ...+......++..+... ....+..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 22223334566789999999998887731 122344555555554432 13333333
Q ss_pred ---HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 353 ---FNFMIEK-GR-VP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 353 ---~~~m~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111111 11 23 56667777777766 88889999888877654 4544444445555789999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
+... .|+...+..+...+.+.|++++|.+.++...+.+ +.+...+..+...+...|++++|...+++.++. .|+.
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~ 609 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSA 609 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCH
Confidence 8665 4455566677788899999999999999999875 344444444445555679999999999999965 5678
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+..++.+.|++++|...|++++..++. +...+..+..++...|++++|++.++++.+ .|.++..+..++.++.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999887 788899999999999999999999999887 7888889999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
..|++++|+..++++.+..|+....... .++...+..+++.|.+-+++...-.+....|++.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~-~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~ 750 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPL-TPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRS 750 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhh-hhHHHHHHHHHHHHHHHHHHHhhcCccchhcccc
Confidence 9999999999999999999988555444 8888888899999999888777766665555444
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-23 Score=196.22 Aligned_cols=456 Identities=15% Similarity=0.099 Sum_probs=350.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006281 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (652)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 166 (652)
-..+.+-..+.|++.+|++.-...-+.+ +.+......+-..+.+..+++....--....+.. ..-.++|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456666778889998888766555544 3334444444455666666666555444333332 2246788889999999
Q ss_pred cCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHH
Q 006281 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (652)
Q Consensus 167 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 246 (652)
.|++++|+.+++.+.+... -....|..+..++...|+.+.|.+.|.+..+. .|...-+.+.+...+...|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999887642 24677888888888899999999998888876 5555555556666777789999999
Q ss_pred HHHHHHhhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcC
Q 006281 247 KVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (652)
Q Consensus 247 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (652)
..+.+..+. .|. .+.|+.|...+-.+|+...|+..|++..+. .|+
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~------------------------------ 250 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN------------------------------ 250 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc------------------------------
Confidence 988887764 343 346777777777788888887777776553 221
Q ss_pred CCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 006281 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (652)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (652)
-...|-.|...|...+.++.|+..+.+.....+. ...++..
T Consensus 251 --------------------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gN 291 (966)
T KOG4626|consen 251 --------------------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGN 291 (966)
T ss_pred --------------------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccc
Confidence 1223444555666677788888888777665433 5567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (652)
+...|..+|..+.|+..|++.++.... -+..|+.|..++-..|+..+|.+.+....... +....+.+.|...|...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc
Confidence 888899999999999999999887432 35789999999999999999999999998874 5567788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (652)
+++|..+|....+- .|. ....+.|...|-+.|++++|+..|+++++..+. -...|+.+...|...|+.+.|++.+.
T Consensus 370 ~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 99999999998864 444 457888999999999999999999999887765 56689999999999999999999999
Q ss_pred Hhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 565 GLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 565 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
++.. +|.-.+++..|+.+|...|+..+|+..|+.+++..|+.+...+| ++..+---.+|.+-
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN-llh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN-LLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH-HHHHHHHHhcccch
Confidence 9877 77778899999999999999999999999999999999777666 77776555555553
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.6e-20 Score=184.21 Aligned_cols=557 Identities=13% Similarity=0.074 Sum_probs=385.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHH
Q 006281 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAF 139 (652)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 139 (652)
.+.|..-|+.+.++.+ +|.- ..+.+++ ...+++..|..+|....... .+||+.+ .+-.++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 3577788888765543 3332 3344444 46788999999998866553 3444432 3335667888999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Q 006281 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (652)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 216 (652)
..|....+..+ -++.++-.|...-....+ +..+..++......+ .-++...+.|...|.-.|++..++.+...+.
T Consensus 220 ~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99988877633 133344333333333333 455566665554433 2366777888888888899999999888888
Q ss_pred hccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006281 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (652)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (652)
......+--...|..+..+|-..|++++|...|.+..+. .||. ..+--+...+.+.|+.+.+...|+...+. .|
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p 373 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LP 373 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Cc
Confidence 762222222334666888888999999999998877664 3343 34445778888899999999999888774 33
Q ss_pred C-hhhHHHHHHHHHccC----CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCH
Q 006281 295 R-TNDYREFILGLIVER----RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM----IEKGRVPTL 365 (652)
Q Consensus 295 ~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m----~~~~~~~~~ 365 (652)
| ..|...+...|...+ ..+.|..++....... +.|...|-.+-..+..++...++..|... ...+..+..
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 3 334444444554443 4566666666666553 44566677777777778777777777654 345555778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSAN---DYFTDM------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
...|.+.......|++..|...|+..... ...+|. .+--.+..++-..++++.|.+.|..+.+. .|+-.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88888888888999999999998887654 122232 23334556666777889999999998877 34432
Q ss_pred -HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH
Q 006281 437 -FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEG 514 (652)
Q Consensus 437 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~ 514 (652)
.|..++......+...+|...+......+ ..++..++.+...|.....+..|.+-|+...+. ...+|..+...|.+.
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 34444433334467788888888888764 566677777787888888888888877776643 223566666666665
Q ss_pred HHc------------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCchhHHHHHH
Q 006281 515 LCQ------------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-GHSDSHVILLK 581 (652)
Q Consensus 515 ~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~ 581 (652)
|.. .+..++|+++|.+++..++. |...-+.++-+++..|++++|..+|.+..+.. ...++|..++.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 532 23567888999888888876 76777778888899999999999999988743 36778889999
Q ss_pred HHhccccHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 582 SLADAREVEMAIEHIKWIQES-SPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|...|+|..|+++|+..... .+.+...+.+.|+.++.+.|++.+|.+.+......
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999987765 45566677777999999999999998888766544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.1e-21 Score=183.82 Aligned_cols=370 Identities=13% Similarity=0.054 Sum_probs=277.1
Q ss_pred CCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 223 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
|.-..+|..+.+.+-..|++++|+..++.+.+...+ .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 333445555555555555556665555555553211 344555555555555555555555555443 23333322222
Q ss_pred HHHH-HccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 303 ILGL-IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (652)
Q Consensus 303 l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 381 (652)
+..+ -..|++.+|...+.+.++... --...|+.|.-.+-..|+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp-----------------------------------~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQP-----------------------------------CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCC-----------------------------------ceeeeehhcchHHhhcchH
Confidence 2222 223555555544433332211 1234566666677888999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHH
Q 006281 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLRPAKKLWDQ 460 (652)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 460 (652)
..|+..|++....++. -...|-.|...|...+.++.|...|.+.... +|+ .+.+..+...|...|.++.|+..+++
T Consensus 235 ~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999998876543 3458889999999999999999999988866 454 56677777888899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH
Q 006281 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (652)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 540 (652)
.++.. +.=...|+.|..++-..|++.+|++.|+..+..... ...+.+.|...|...|.+++|..+|...++-.+. -.
T Consensus 312 al~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~a 388 (966)
T KOG4626|consen 312 ALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FA 388 (966)
T ss_pred HHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hh
Confidence 99874 334679999999999999999999999999975322 4678889999999999999999999998887665 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
...+.|...|.+.|++++|+..++++.. .|.-.+++..++..|...|+++.|++.+.++...+|.. ....+.|+.+|.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~k 467 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYK 467 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhh
Confidence 5688899999999999999999999887 77778899999999999999999999999999999987 555666999999
Q ss_pred cCCCCchHHHHHHHHHHc
Q 006281 620 SSSYPEPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g~~~~a~~~~~~~~~~ 637 (652)
..|+..+|++-+++..+.
T Consensus 468 DsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ccCCcHHHHHHHHHHHcc
Confidence 999999999999988765
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-19 Score=181.51 Aligned_cols=578 Identities=12% Similarity=0.055 Sum_probs=411.0
Q ss_pred CHHHHHHhhhhhhccChhHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 006281 48 SPSLVARVINPYLLTHHSLALGFFNWAS-QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (652)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (652)
-+.++.+..-.+.+++...|+.+|..+. ..++..||+.. .+-..+.+.++.+.|...|.+..+.+ |.++.++..|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHH
Confidence 3455556666677888999999999864 46677777743 23367789999999999999999976 33444444333
Q ss_pred HHHHcC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCc--cCcccHHHHHHHHHh
Q 006281 127 PSLIQG---KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCE 201 (652)
Q Consensus 127 ~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~ 201 (652)
..-... ..+..++.++...-.... -++.+.+.|...|.-.|+++.++.+.+-+...... .-...|-.+.++|-.
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 332222 345667777776655443 37889999999999999999999999988876421 123456778889999
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC----C
Q 006281 202 NAKLGQVLSMLDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG----S 276 (652)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~ 276 (652)
.|++++|...|.+..+. .+++ ...+.-|...|.+.|+++.+...|+.+.+.. +-+..+...+...|...+ .
T Consensus 320 ~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred hccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999998876 4443 4445568999999999999999999998862 225567767767776664 4
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH----cCCCCCCHHHHHHHH-HHHhcCChhHHHH
Q 006281 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV----SGKFTIDDDVLNALI-GSVSSIDPRSAIV 351 (652)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~-~~~~~~~~~~a~~ 351 (652)
.+.|..++.+..+.- .-|...|..+...+... +...+...+..+. ..+..+.+...|.+- ..+..|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 456666666555433 22444555555555444 3333355554433 444455666655554 4577899999999
Q ss_pred HHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 352 FFNFMIEK---GRVPTL------STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 352 ~~~~m~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
.|+..... ...++. .+--.+...+-..++.+.|.+.|..+....+. -...|--++...-..++..+|...
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHH
Confidence 99988765 222222 23334555667778999999999999886432 222333333222234678889999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHH
Q 006281 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSE------------VGEIEGA 489 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A 489 (652)
+++.....- .++..++.+...+.+...+..|.+-|+...+. ...+|..+.-.|...|.+ .+..++|
T Consensus 553 lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 998887642 35666666777888888999999988777765 224677777677665542 2456789
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+++|...++...+ |...-+.+.-.++..|++.+|..+|.+..+.... ...+|-.++.+|...|++..|+++|+.....
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876544 6777777888899999999999999998876653 4558889999999999999999999988663
Q ss_pred ---CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh-------------------cCCCCchH
Q 006281 570 ---LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS-------------------SSSYPEPI 627 (652)
Q Consensus 570 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~g~~~~a 627 (652)
..++.....|++++.+.|.+.+|.+.+..+....|.++.+.+| ++.... ..++.+.|
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3366677799999999999999999999999999999888888 444432 23455667
Q ss_pred HHHHHHHHHcccc
Q 006281 628 LLLLHALQEKCLD 640 (652)
Q Consensus 628 ~~~~~~~~~~g~~ 640 (652)
.++|+++...+-+
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777666544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.1e-19 Score=188.18 Aligned_cols=434 Identities=12% Similarity=-0.008 Sum_probs=274.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 006281 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (652)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (652)
+......+.+.|+++.|+..|++.... .|+...|..+..+|.+.|++++|++.++...+. .|.....+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 445566677777788888887777654 456666777777777778888888888877766 566677777777788
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 316 (652)
...|++++|..-|......+...+. ....++..+.. ..+........+.. .++...+. .+..+..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVT-FVGNYLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHH-HHHHHHHHccCCcch
Confidence 8888888887777655443211111 11111111111 11222222222211 11111111 111121111111111
Q ss_pred HHHHHHHcCCCCCCHHHHHHH---HHHHhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006281 317 ELGEVIVSGKFTIDDDVLNAL---IGSVSSIDPRSAIVFFNFMIEKG-RVP-TLSTLSNLSKNLCKRNKSDELVEVYKVL 391 (652)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 391 (652)
.-++...+............. ...-..+++++|+..|+...+.+ ..| ....+..+...+...|++++|...++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111110000000001111 11122357788888888887764 223 3455666777778888999999988888
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH
Q 006281 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471 (652)
Q Consensus 392 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 471 (652)
.+..+. +...|..+...+...|++++|+..|++..+.... +..+|..+...+...|++++|...|++..+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 876433 4567778888888888999999998888776432 56778888888888899999999998888764 55677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH------HHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS------ILST 545 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~ 545 (652)
.+..+..++.+.|++++|+..|++.++.. ..+...+..+...+...|++++|++.|++++...+..+.. .+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788888888899999999988888653 2256778888888888899999999988887765432211 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
....+...|++++|.++++++.. +|.+...+..++.++.+.|++++|++.++++.+..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 22233446888889988888765 55566677788888888999999999888888876653
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.5e-19 Score=187.74 Aligned_cols=429 Identities=10% Similarity=-0.032 Sum_probs=300.2
Q ss_pred cHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 006281 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270 (652)
Q Consensus 191 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 270 (652)
.+......+.+.|++++|+..|++.... .|. ...|..+..+|.+.|++++|++.++...+... .+...|..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3445566777889999999999998876 443 56777788899999999999999999887532 256688888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 006281 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (652)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (652)
|...|++++|+..|......+...+ .....++..+.. ..+........+.... +...+..+-..+.........
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcch
Confidence 9999999999888876654422111 111222222211 1222222222222211 111111111111111111111
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHHhCC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 351 VFFNFMIEKGRVPTL-STLSNLSK---NLCKRNKSDELVEVYKVLSAND-YFT-DMESYNVMVSFLCTSGRLREAYGVIQ 424 (652)
Q Consensus 351 ~~~~~m~~~~~~~~~-~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 424 (652)
.-+....+ ..+.. ..+..+.. -....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11111111 11110 00111110 1123478999999999998764 222 45578888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006281 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 425 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
+..+.... +...|..+...+...|++++|...|+.+.+.. +.+...|..+...|...|++++|+..|++.++.... +
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~ 432 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-F 432 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-C
Confidence 99887322 35678888889999999999999999998875 567889999999999999999999999999976432 5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHH------
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHV------ 577 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~------ 577 (652)
...+..+...+.+.|++++|+..|++++...+. ++..+..+..++...|++++|++.+++... .|.....+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 677888888999999999999999999887665 678899999999999999999999999876 333322221
Q ss_pred HHHH-HHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLK-SLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
..+. .+...|++++|+++++++.+.+|+.. ..+..++.++.+.|++++|.+.+++..+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECD-IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122 23346999999999999999999874 45666999999999999999999988765
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.7e-20 Score=188.03 Aligned_cols=308 Identities=16% Similarity=0.128 Sum_probs=251.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHH
Q 006281 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSFL 410 (652)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 410 (652)
|...+.....+++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3344455667788888888888887642 3566788888899999999999999999887643222 24678889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGEI 486 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 486 (652)
.+.|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999998763 34678899999999999999999999999988652222 22456777888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
++|...|+++.+... .+...+..+...+.+.|++++|.++|+++...++.....++..++.+|...|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999997542 2466788888999999999999999999998766544667888999999999999999999999
Q ss_pred hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc---CCCCchHHHHHHHHHHcccccCC
Q 006281 567 SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS---SSYPEPILLLLHALQEKCLDSEI 643 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~ 643 (652)
....++...+..++..+.+.|++++|+..++++.+..|+.. .++.++..+.. .|+.+++...+++|.+++++++|
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 88544556668899999999999999999999999988763 34435555543 66999999999999999999999
Q ss_pred CCC
Q 006281 644 GAG 646 (652)
Q Consensus 644 ~~~ 646 (652)
...
T Consensus 354 ~~~ 356 (389)
T PRK11788 354 RYR 356 (389)
T ss_pred CEE
Confidence 854
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.5e-19 Score=187.87 Aligned_cols=369 Identities=10% Similarity=0.004 Sum_probs=255.0
Q ss_pred HHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 236 FCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
+.+..+++.-.-.|..-.+. .-.-+..-...++..+.+.|++++|..+++........+.. .+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHH
Confidence 45677777766666654432 01112333455667778888888888888888776544433 3334445666688888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 393 (652)
.|...++.+....+................|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 88888888887654433333333333455678888888888887653 22456677777788888888888888887766
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006281 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (652)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 473 (652)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 5443 23333333 3467788888888888887766433344455555667778888888888888888764 5567777
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 474 NILISKFSEVGEIEG----ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..+...|...|++++ |...|++..+.... +...+..+...+...|++++|...+++++...+. +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 778888888888875 78888888765332 5667777888888888888888888888877765 56667778888
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (652)
+.+.|++++|++.++++.. .|..+..+..++.++...|++++|++.++++.+..|+.....|
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 8888888888888888776 4444444445677778888888888888888888777654433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.2e-18 Score=182.73 Aligned_cols=354 Identities=14% Similarity=0.092 Sum_probs=235.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (652)
++..+.+.|+++.|..+++..... .|.+......++.+....|++++|...|+++..... .+...+..+...+...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 333444555555555555555544 334344444444444555555555555555554321 1333444455555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 006281 275 GSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (652)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (652)
|++++|...+++..+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 124 g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~------------------------------ 171 (656)
T PRK15174 124 KQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA------------------------------ 171 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH------------------------------
Confidence 5555555555555442 222 2233333444444444444444433322
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006281 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (652)
Q Consensus 354 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 433 (652)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|+..++++......
T Consensus 172 ----~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~- 244 (656)
T PRK15174 172 ----QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD- 244 (656)
T ss_pred ----HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 22111 22223233 347889999999999999887754445555666678899999999999999999987533
Q ss_pred CHHHHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 434 DVSFYNSLMEACCREDLLRP----AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 57778889999999999986 899999999874 567789999999999999999999999999976433 466777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+..++.+.|++++|.+.|+++...++. +...+..+..++...|+.++|.+.++++.+ +|... ...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~ 389 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQS 389 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhh
Confidence 8889999999999999999999887765 334455567789999999999999999877 44432 244
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006281 589 VEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~ 606 (652)
+++|...+.++.+.-+..
T Consensus 390 ~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 390 FEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 456666676666654433
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=8e-18 Score=180.58 Aligned_cols=423 Identities=13% Similarity=0.060 Sum_probs=242.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
.++.-..-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++.....+ .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344445556666667777777777777766532 44555566777777777777777777777655422 1344555666
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC
Q 006281 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 241 (652)
..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...|.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCC
Confidence 66666677777777766666542 11223 555555555666666666666666655 45555555555555555566
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
.+.|++.++.... .|+... -+ ....+.. ++......+
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~---~l-------~~~~~~~-------------------~~r~~~~~~----------- 202 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKR---DL-------EADAAAE-------------------LVRLSFMPT----------- 202 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHH---HH-------HHHHHHH-------------------HHHhhcccc-----------
Confidence 6666655554432 122000 00 0000000 000000000
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhC-CCC
Q 006281 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---DELVEVYKVLSAN-DYF 397 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~ 397 (652)
....+++ ++|+..++.+.+. ...
T Consensus 203 -----------------------------------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 203 -----------------------------------------------------RSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred -----------------------------------------------------cChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 0000111 2333333333321 011
Q ss_pred cCHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---
Q 006281 398 TDME-S----YNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--- 468 (652)
Q Consensus 398 ~~~~-~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--- 468 (652)
|+.. . ....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|+..|+++.+..-..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 1110 0 000122233445666666666666555321 221 11113445566666666666666655432000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCH---hhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKG-----------VAPDA---TTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.......+..++...|++++|.++++.+.+.. -.|+. ..+..+...+...|++++|++++++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12334445555566666666666666665431 12332 24456677888899999999999999888
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+. +...+..++..+...|++++|++.++++.. +|.++..+...+..+...|++++|+..++++.+..|++..+
T Consensus 389 ~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 389 APG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 776 688899999999999999999999999887 67777888888889999999999999999999999988533
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=4.4e-19 Score=177.83 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=144.3
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHHccC
Q 006281 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGK 240 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 240 (652)
.+...|+++.|...|+++.+.+. .+..++..+...+...|++++|..+++.+... +..++ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666665431 12334555555555566666666666655543 11111 1123445555555566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (652)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (652)
++++|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666555431 22444555555555555555555555555544322111000
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
....+..+...+.+.|++++|...|+++.+.... +.
T Consensus 179 -------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~ 214 (389)
T PRK11788 179 -------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CV 214 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CH
Confidence 0011222333344445555555555554443221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
..+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|++++|.+.++.+.+. .|+...+..++..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 3444455555555555555555555554322111234445555555555555555555555543 23334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhCCC
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 536 (652)
.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++++.++
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 5555555555555555443 3455555544444432 2355555555555554443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=5e-18 Score=182.18 Aligned_cols=219 Identities=12% Similarity=0.054 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 006281 417 REAYGVIQEMKRK-GLDPDVS-FY----NSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 417 ~~a~~~~~~~~~~-~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 489 (652)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7888899988854 2233321 11 11134456779999999999999987522 222 223357789999999999
Q ss_pred HHHHHHHHHCCCCC---CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----------Ccc---HHHHHHHHHHHHh
Q 006281 490 LRLFHNMLEKGVAP---DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV-----------MLA---RSILSTFMISLCR 552 (652)
Q Consensus 490 ~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~ 552 (652)
+..|+++.+..... .......+..++...|++++|.++++++....+ .|+ ...+..++..+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999988653221 134566677788999999999999999887643 122 2345677888999
Q ss_pred cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHH
Q 006281 553 RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
.|++++|+++++++.. .|.++..+..++..+...|++++|++.++++.+..|+.....+. ++..+...|++++|++.+
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~-~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE-QAWTALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHhCCHHHHHHHH
Confidence 9999999999999877 78888889999999999999999999999999999998765555 777899999999999999
Q ss_pred HHHHHc
Q 006281 632 HALQEK 637 (652)
Q Consensus 632 ~~~~~~ 637 (652)
+++.+.
T Consensus 451 ~~ll~~ 456 (765)
T PRK10049 451 DDVVAR 456 (765)
T ss_pred HHHHHh
Confidence 998875
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.7e-16 Score=163.41 Aligned_cols=461 Identities=12% Similarity=0.021 Sum_probs=243.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCH--HhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006281 92 KSLSLSRQINAIDSVLKQVKVNKITLDS--SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (652)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 169 (652)
-...+.|++..|...|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 34558888888888888888765 332 334 77777778888888888888876211 1112222233456777788
Q ss_pred hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHH
Q 006281 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 249 (652)
+++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|. ...+..++..+...++..+|++.+
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~-~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPT-VQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---Ccc-hHHHHHHHHHHHhcchHHHHHHHH
Confidence 88888888888876432 3455556666777778888888888887766 333 223333444444455555588888
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCC
Q 006281 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329 (652)
Q Consensus 250 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (652)
+++.+.. +-+...+..++.++.+.|-...|+++..+ .|+..+-...... +.+.+.+..+........
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~- 259 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS- 259 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-
Confidence 8887763 22555667777777777777777766544 2222111111000 000000000000000000
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH
Q 006281 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTL-----STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403 (652)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 403 (652)
...-+. -.+.|+.-++.+... +..|.. ....-.+-++.+.+++.++++.|+.+...+.+....+-
T Consensus 260 ~~~r~~---------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 260 ETERFD---------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred chhhHH---------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 000000 113344444444331 111211 11112233455556666666666666655543334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHH
Q 006281 404 NVMVSFLCTSGRLREAYGVIQEMKRKGL-----DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILI 477 (652)
Q Consensus 404 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 477 (652)
..+.++|...+++++|..+|+++..... .++......|.-++...+++++|..+++.+.+. .|. ...|
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~---- 404 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY---- 404 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----
Confidence 5566666666666666666666544321 112222344555555555566666555555542 120 0000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
|.. .....||-. .+..++..+...|+..+|.+.++++....|. |..+...+...+...|.+
T Consensus 405 ------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 405 ------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLP 466 (822)
T ss_pred ------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 000 001122222 2223344455666666666666666655554 666666666666666666
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.+|++.++.+.. +|.+.......+.++...|++++|..+.+.+.+..|++.
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 666666655544 444455555666666666666666666666666666654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=7.6e-16 Score=161.81 Aligned_cols=443 Identities=14% Similarity=0.078 Sum_probs=285.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCccc-HHHH--HHHHHhc
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG-FGVF--IWKFCEN 202 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l--l~~~~~~ 202 (652)
+-...+.|+++.|++.|++..+....-.+..+ .++..+...|+.++|+..+++.. .|+... +..+ ...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 33456889999999999998876433112344 88888888899999999998887 232222 2223 4466677
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 282 (652)
|++++|+++++++.+. .|.++.++..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++
T Consensus 116 gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 116 KRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred CCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999988 7777777778888889999999999999988775 4555555444444444566656888
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 283 VLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 283 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
.++++.+.. |+ ...+..+..++.+.|-...|.++...-...-
T Consensus 191 ~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f----------------------------------- 233 (822)
T PRK14574 191 ASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV----------------------------------- 233 (822)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-----------------------------------
Confidence 888888763 43 4455566666667776666666544321100
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-HH--
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDV-SF-- 437 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~-~~-- 437 (652)
+......+ +.+.+.+..+. ...++.. - -. +---.+.|+.-++.+... +..|.. ..
T Consensus 234 --~~~~~~~l--------~~~~~a~~vr~----a~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 234 --SAEHYRQL--------ERDAAAEQVRM----AVLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred --CHHHHHHH--------HHHHHHHHHhh----ccccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 00000000 00001111100 0000000 0 00 000134444444444431 111221 11
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHH
Q 006281 438 --YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-----VAPDATTYTS 510 (652)
Q Consensus 438 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ 510 (652)
..=.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|+.+|+.+.... ..++......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 112234556667777777777777766544445566667777777777777777777765432 1223333456
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCC-----------CccH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDV-----------MLAR---SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
|.-++...+++++|..+++++.+..+ .|++ ..+..++..+.-.|++.+|++.++++.. .|.+...
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777777777777777665322 2332 3355567778899999999999999977 7888889
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...++.++...|++.+|++.++.+...+|......+. .+..+...|+|.+|..+.+.+.+.
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~-~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERA-QAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988555554 888899999999999999777655
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=1.1e-13 Score=138.25 Aligned_cols=585 Identities=10% Similarity=0.020 Sum_probs=331.2
Q ss_pred CCCHHHHH---HhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH
Q 006281 46 SLSPSLVA---RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122 (652)
Q Consensus 46 ~~~~~~~~---~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (652)
.++|++.. ..-..+++++.+.|..++..+.++.+ .....|..|..+|-..|+.+.+...+-.+-..+ +-|...|
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W 210 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELW 210 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHH
Confidence 35554432 33334567788888888888877655 355668888888888888888887776665554 5667888
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHH----HHHH
Q 006281 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV----FIWK 198 (652)
Q Consensus 123 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----ll~~ 198 (652)
..+.....+.|+++.|.-+|.+..+..+. +...+---...|-+.|+...|..-|.++.....+.|..-+.. +++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 88888888889999999999888877433 333334456677888888888888888887654333333333 3344
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH---------------
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA--------------- 263 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------------- 263 (652)
+...++-+.|++.++..... +....+...++.++..|.+...++.|......+......+|..-
T Consensus 290 ~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 55567778888888888775 33444555667788888888888888888777765222222111
Q ss_pred -------HH----HHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCC
Q 006281 264 -------YR----IVAEEFKLMGSVFEREVVLKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330 (652)
Q Consensus 264 -------~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (652)
|. -++-++.+....+....+...+....+ .-+...|..+..++...|.+.+|..++..+......-+
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 11 122333444444444444455555543 33444667777788888888888888888877665555
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCcCHH
Q 006281 331 DDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------DYFTDME 401 (652)
Q Consensus 331 ~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 401 (652)
..+|-.+-.++. .+.+++|++.|+..+..... +...-..|...+.+.|+.++|.+.+..+... +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 566655555544 46788888888887764321 2333445555677788888888888775422 2333333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHH----------------------
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKG-----LDP-----------------DVSF---------------------- 437 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p-----------------~~~~---------------------- 437 (652)
........+.+.|+.++-+.+-..|...+ +-| ...+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 44444555666666665444443333211 000 0000
Q ss_pred ---------------------HHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHHHHH
Q 006281 438 ---------------------YNSLMEACCREDLLRPAKKLWDQMFASGC--SGNL---KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 438 ---------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~ 491 (652)
+.-++.++++.++.++|..+...+.+... .++. ..-...+.+....+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 12223333344444444444444433210 0111 111222333334444444444
Q ss_pred HHHHHHHC-CC--CCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 492 LFHNMLEK-GV--APD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 492 ~~~~m~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.++.|... +. .|. ...|+...+.+.+.++-.--.+++.........-++.........+...+.+..|++.+-++-
T Consensus 688 ~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH
Confidence 44444422 11 010 112222233333333222222222222222211111122222233445566777777766665
Q ss_pred h-CCCCchhHHHHHHHHhc----------cccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 568 S-DLGHSDSHVILLKSLAD----------AREVEMAIEHIKWIQESSPT--MLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 568 ~-~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
. .|.+|-....++.++.. +-..-+++..+++..+.... .-...|| ++.+|-..|-..-|..++++.
T Consensus 768 ~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN-igRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 768 RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN-IGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHcccHHHHHHHHHHH
Confidence 5 55556555555555422 12234566666666655433 4455666 999999999999999999988
Q ss_pred HHc
Q 006281 635 QEK 637 (652)
Q Consensus 635 ~~~ 637 (652)
.+-
T Consensus 847 L~~ 849 (895)
T KOG2076|consen 847 LEV 849 (895)
T ss_pred hCC
Confidence 765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.4e-14 Score=132.21 Aligned_cols=381 Identities=13% Similarity=0.112 Sum_probs=189.7
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 006281 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304 (652)
Q Consensus 225 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 304 (652)
...++..||.+.++--..+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|||.+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 344555555555555555555555555555444555555555554432211 1445555555555555555555555
Q ss_pred HHHccCCHHHHHH----HHHHHHcCCCCCCHHHHHHHHHHHhc-CChh-HHHHHHHHHH----HcCCCC----CHHHHHH
Q 006281 305 GLIVERRICEAKE----LGEVIVSGKFTIDDDVLNALIGSVSS-IDPR-SAIVFFNFMI----EKGRVP----TLSTLSN 370 (652)
Q Consensus 305 ~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~a~~~~~~m~----~~~~~~----~~~~~~~ 370 (652)
+..+.|+++.|.. ++.+|.+.|+.|...+|..++..+++ ++.. .+..++.++. .+..+| +...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555555544332 22223333333333333333322221 1111 1222233222 222222 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC----CCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSAND----YFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|+....+..+..|+.|.-.-.-|+..+-..+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5666666666666666655544321 1111 12344555556666666666666666665555566666666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHcCCC
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLEGLCQETN 520 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~ 520 (652)
+..-.+.++-.-++|.+++..|.. ++. +--++++..|.+..+.|+.. -+.....-|. -+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCA--AD 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HH
Confidence 666666666666666666654421 111 11122233333322233222 2222221111 11
Q ss_pred HHHHHH-HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHH---HHHHHHhccccHHHHH
Q 006281 521 LQAAFE-VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHV---ILLKSLADAREVEMAI 593 (652)
Q Consensus 521 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~---~l~~~~~~~g~~~~A~ 593 (652)
+.++.+ .-.++.+. ...+...+.++-.+.+.|..++|.+++..+... -+..+..+ -+...-...+....|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 222211 11223333 345567888888899999999999999888542 22223333 4556667788889999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
..++-+...+...-..+.+.+...+.-+..-.+|++
T Consensus 582 ~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 582 EVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 999988776654434444445555544444344443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7.5e-15 Score=133.85 Aligned_cols=244 Identities=15% Similarity=0.090 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
+.+..||..+|..+++--..+.|.+++++..+...+.+..+||.+|.+-+-. ...+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3467889999999999999999999999999888889999999999775533 237889999999999999999999
Q ss_pred HHHHHhcCChhh----HHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHH-HHHHHHHHHHhc------cCCCCCchhhH
Q 006281 161 LAVLASDGYIDN----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG-QVLSMLDEVRKR------ENSMINGSVIA 229 (652)
Q Consensus 161 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~------~~~~~~~~~~~ 229 (652)
+.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++.. .+..++..+... ....|.+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 5677888999999999999999999999887764 355555555432 13355666777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC----CCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 230 VLIIHGFCKGKRVEEAFKVLDELRIR----ECKPDFI---AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 230 ~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
...+..|.+..+.+-|.++-.-.... -+.|+.. -|..+....|+....+.....|+.|.-.-..|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77788888888888888877665432 1334322 3566777778888888888888888887788888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCC
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFT 328 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (652)
+++.-..+.++...+++..++..|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 88888888888887777776665533
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=3.4e-12 Score=122.97 Aligned_cols=453 Identities=11% Similarity=0.012 Sum_probs=257.8
Q ss_pred CChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHH
Q 006281 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (652)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 247 (652)
.+.+.|.-++.+..+. ++.+.. |.-++++..-++.|..++++..+. .|.+..+|.+-...--.+|+.+...+
T Consensus 390 E~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3444455555555443 111111 222445555566666666666655 55555566554444455666666665
Q ss_pred HHHHH----hhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 248 VLDEL----RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT--NDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 248 ~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
++.+- ...|+..+...|-.=...|-..|..-.+..+.......|+.-.. .|+..-...|.+.+.++-+..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 55432 33455666666665556666666666666666655555544322 2555555566666666666666665
Q ss_pred HHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 322 IVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
.++-. +.+..+|..+...- ..|..++-..+|.+....- +-....+-.....+-..|++..|..++....+.... +.
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 55542 22333444443332 2355555555565555442 223334444445555556666666666666655444 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
..|-.-+.....+..++.|..+|.+.... .|+...|.--+...-..+..++|.+++++.++. ++.-...|..+.+.+
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 55666666666666666666666665543 345555554444445556666666666666554 122234555555666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
-+.++++.|.+.|..-.+. +.-....|..|.+.=-+.|.+-.|..++++..-.++. +...|-..++.-.+.|+.+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence 6666666666666554432 1213344555555555556666666666666655555 5556666666666666666665
Q ss_pred HHHHHhhhC-------------------------------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 561 KLLRGLSSD-------------------------------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 561 ~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+..++.++ ..++.....++..+....++++|.+.|.++.+.+|+. ..
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~-GD 852 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN-GD 852 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-ch
Confidence 555444332 1233344567777778888999999999999999877 55
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.|.-+...+.++|.-++-.+++.++...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5555777788899888888888877764
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1e-13 Score=138.63 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=136.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
+...|+.++|.+++.++++.. +.....|..|...|-..|+.+++...+-...-..++ |...|-.+.....+.|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 344588888988888888876 677788888888888888888888877666554433 567888888888888888888
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhh-H----HHHHHHHHccCCHHHHHHH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-A----VLIIHGFCKGKRVEEAFKV 248 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~----~~l~~~~~~~g~~~~A~~~ 248 (652)
.-.|.+..+.... +...+---...|-+.|+...|...|.++.+. .|+...- . ...++.|...++-+.|.+.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888887532 3333333445677788888888888888876 3322111 1 1345667777777888888
Q ss_pred HHHHhhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 249 LDELRIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 249 ~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
++..... +-..+...+++++..+.+...++.+......+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 8776652 2223455677788888888888888887777766
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.1e-14 Score=133.72 Aligned_cols=479 Identities=11% Similarity=0.008 Sum_probs=299.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH---
Q 006281 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI--- 196 (652)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--- 196 (652)
++..|..-|.......+|+..|+-+++...-|+.-.. -.+...+.+...+.+|++.|......-...+..+-..++
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444555566667778888888888777666665433 234556777778888888887766543333333332222
Q ss_pred -HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc------------CHHH
Q 006281 197 -WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP------------DFIA 263 (652)
Q Consensus 197 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------------~~~~ 263 (652)
..+.+.|.++.|+..|+...+. .|+-...+|.++ ++.--|+-++..+.|.+|...-..| +...
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 2355678888888888888776 566555566444 4556778888888888876542222 2222
Q ss_pred HHHHH-----HHHHhcC--CHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 006281 264 YRIVA-----EEFKLMG--SVFEREVVLKKKRKLGVAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335 (652)
Q Consensus 264 ~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (652)
.+.-+ +-+-+.. +.++++-.-.++..--+.|+.. -+...+..+-.....+.|.+ .-.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d--------------lei~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID--------------LEIN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh--------------hhhh
Confidence 22111 1111111 1111111111111112222211 11111111111111111111 1134
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK--RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (652)
.....+.+|+++.|+++++-+.+++-+.-...-+.+-..+.- -.++..|.++-+......-. +......-...-..+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeec
Confidence 445667789999999999998877644333333333222222 34566777766665543221 333333333334457
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
|++++|.+.|++.......-....||+ .-.+-..|++++|++.|-.+... +..+......+...|-...+...|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 999999999999987633322333442 33467889999999999877653 2457778888899999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
.+.... +..|+..+..|...|-+.|+-..|.+.+-+.-.. ++.+..+...|...|....-+++|+.+|++..--.++.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 887754 4447888899999999999999999988764443 44588899999999999999999999999987643444
Q ss_pred hhHH-HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 574 DSHV-ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 574 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
.-|. .++.++.+.|++.+|.++|+.+..+.|.+... ...|+......|-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc-lkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC-LKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH-HHHHHHHhccccc
Confidence 4444 66666678999999999999999999988544 4447777666553
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=6.7e-13 Score=127.74 Aligned_cols=498 Identities=11% Similarity=0.001 Sum_probs=380.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 006281 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (652)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (652)
++.....+.+.|+-++.+..+. ++.+...|.++ ++..-++.|..+++...+. ++-+..+|.+-...=-.+|+.+
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHH
Confidence 4445667777788888888775 35555555544 4456678888888888654 4447778877777777888888
Q ss_pred hHHHHHHH----HHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCC-CchhhHHHHHHHHHccCCHHHHH
Q 006281 172 NALKMFDE----MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI-NGSVIAVLIIHGFCKGKRVEEAF 246 (652)
Q Consensus 172 ~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 246 (652)
.+.++.++ +...|+..+...|..=...|-..|..-.+..+...+... |... +...+|+.-.+.|.+.+.++-|.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 88888765 345678888888888777888888888888888888766 4333 33456777778888888899898
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCC
Q 006281 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (652)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (652)
.+|....+- .+-+...|......--..|..++...+|.+....-. -....+.......-..|++..|..++..+.+..
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 888888764 233556677666666677888888888888877532 233344444556667799999999998888876
Q ss_pred CCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHH
Q 006281 327 FTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD-MESYN 404 (652)
Q Consensus 327 ~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 404 (652)
+. +...|-+.+... .+..++.|..+|.+... ..|+...|..-+...--.++.++|.+++++..+.- |+ ...|-
T Consensus 615 pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~l 689 (913)
T KOG0495|consen 615 PN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWL 689 (913)
T ss_pred CC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHH
Confidence 55 666777777664 44688999999988765 45677777777777777899999999999888762 33 44777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 405 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...--+.|.+..|..++++..-.+ +.+...|-..|..-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcC
Confidence 7888999999999999999876655 23355678888888888899999999999998876 778899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (652)
+.+.|..+..+.++. +..+...|..-|....+.++-......++++ .-|+.++-.+...+-...++++|.+.|.
T Consensus 768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 4446778888888887777765665555543 2366688888999999999999999999
Q ss_pred Hhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHH
Q 006281 565 GLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612 (652)
Q Consensus 565 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (652)
+... ++...++|.-+...+..+|.-+.-.+++.......|.. ...|.
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h-G~~W~ 889 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH-GELWQ 889 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-CcHHH
Confidence 9987 77788888888888899999999999999999888865 34443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=3.9e-15 Score=136.56 Aligned_cols=462 Identities=13% Similarity=0.080 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-HHHHHHHcCCChhHHHHHHHHHHhCCCCCC----hhhHHH
Q 006281 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR-FIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICNS 159 (652)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 159 (652)
.....+.+-|.....+.+|...++-+.+....|+.-.+. .+-..+.+..++.+|++.|+.....-+..+ +...|.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455566777788899999999999988778766543 344667788899999999998776532222 234556
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc----------hhhH
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING----------SVIA 229 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~ 229 (652)
+...+.+.|+++.|+.-|+...+. .|+-.+-..|+-++...|+.++..+.|.++....+....+ ....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666778999999999999998775 4565544445546677899999999999998763321111 1111
Q ss_pred H-----HHHHHHHccCC--HHHHHHHHHHHhhCCCCcCHHH-------------HH--------HHHHHHHhcCCHHHHH
Q 006281 230 V-----LIIHGFCKGKR--VEEAFKVLDELRIRECKPDFIA-------------YR--------IVAEEFKLMGSVFERE 281 (652)
Q Consensus 230 ~-----~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~-------------~~--------~ll~~~~~~g~~~~a~ 281 (652)
+ -.+.-+-+.++ -+++.-.-.++..--+.||-.. +. .-..-+.++|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 1 11121211111 1122211112211112222110 00 0112356778888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILG--LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~ 359 (652)
+++.-..+..-+.....-+.+... +..-.++..|.+..+..+....-......|.--..+.+|++++|...|++.+..
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 887777665433333333332222 222345566666555444321110011111111236677888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006281 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (652)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 439 (652)
+..-....|+.- -.+-+.|++++|.+.|-++...-. .+..+...+.+.|....+..+|++++-+.... ++.|+....
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 433333333332 246677888888888877654311 25667777777888888888888888776544 344677788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-cC
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC-QE 518 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~ 518 (652)
.|...|-+.|+-..|.+.+-+--+- ++-+..+...|...|....-+++++.+|++.. -++|+..-|..++..|. +.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhc
Confidence 8888888888888888776654443 46677788888888888888888888888765 35788888887776554 67
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
|++++|+.+|+.....-+. +...+..|++.+...|.
T Consensus 674 gnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 8888888888876655554 77788888877776663
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.3e-12 Score=118.41 Aligned_cols=480 Identities=12% Similarity=0.019 Sum_probs=312.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+...|-.-.+-=..++++..|..+|++....+ ..+...|...+.+=.++..++.|..+|+..+..-+..|. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 33344444444455667777777777777655 456666666677667777777777777776654322222 3333334
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCH
Q 006281 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 242 (652)
+=-..|++..|.++|++-.+. .|+...|.+.|+.-.+.+..+.|..++++..-. . |....|.-....-.++|.+
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---H-P~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---H-PKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---c-ccHHHHHHHHHHHHhcCcH
Confidence 444557777777777776553 677777777777777777777777777776643 2 3455565566666677777
Q ss_pred HHHHHHHHHHhhC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 006281 243 EEAFKVLDELRIR-EC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELG 319 (652)
Q Consensus 243 ~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 319 (652)
..|..+|+...+. |- .-+...+.++..--.++..++.|.-+|.-...+-.+-. ...|.....---+-|+.....+..
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7777777766543 10 01223344444444456667777777766655421111 111211111111223322221110
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006281 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 399 (652)
- .+-.--++.+++.+ +.|..++-..++.-...|+.+...++|+.....-++..
T Consensus 304 v--------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 304 V--------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred h--------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 0 00011233333332 34667777778777888999999999998886532211
Q ss_pred HH------HHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChhhHHHHHHHHHHcCC
Q 006281 400 ME------SYNVMVSF---LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC----CREDLLRPAKKLWDQMFASGC 466 (652)
Q Consensus 400 ~~------~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~ 466 (652)
.. .|--+=-+ -....+++.+.++|+..++. ++...+||.-+--.| .++.++..|.+++...+ |.
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GK 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--cc
Confidence 11 12111111 23467899999999998884 344556666554444 47789999999998876 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCccHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARSILST 545 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ 545 (652)
.|-..+|...|..-.+.++++.+..++++.++.++. +..+|......=...|+.+.|..+|+-+++.. .......|.+
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 899999999999999999999999999999988655 78889888888888999999999999887765 3334556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh-----ccc-----------cHHHHHHHHHHHHh
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA-----DAR-----------EVEMAIEHIKWIQE 601 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 601 (652)
.|+.-...|.+++|..+++++.+......+|.+.+.--. +.| +...|..+++.+..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999997777778887776554 344 66788888888764
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.1e-14 Score=131.40 Aligned_cols=220 Identities=13% Similarity=0.051 Sum_probs=138.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.-.|+.-.|..-|+..+.....++ ..|.-+...|....+.++....|+...+.+ +-|+.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345666777777777766643322 225556666777777777777777777665 556666666666666677777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 006281 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-D 569 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 569 (652)
.-|++.++.... +...|..+.-+..+.+.++++...|+++...-+. .+.+|+....++...+++++|.+.++.... .
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 777777754322 3445555555555677777777777776665554 566777777777777777777777776655 3
Q ss_pred CC------CchhHHHHHHHHh-ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 570 LG------HSDSHVILLKSLA-DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 570 ~~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
+. ++..++.-+.... -.+++..|+++++++.+.+|.. ...+..|+....+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 2223321111111 2367777777777777777766 3445557777777777777777776543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=4.6e-17 Score=154.09 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=117.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSAND-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 448 (652)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34667788999999999996654443 2335666777777778889999999999999887544 55667777776 789
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
+++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887765 4667778888999999999999999999987542 345777888899999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++++++..+. +..+...++..+...|+.+++.++++..... +.++..+..++.++...|++++|+..++++.+.+|.+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9999999887 7888999999999999999999999888773 6677788899999999999999999999999999998
Q ss_pred cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 607 LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+....+ +++++...|+.++|.++.+++.+
T Consensus 248 ~~~~~~-~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLA-YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHH-HHHHHT-----------------
T ss_pred cccccc-ccccccccccccccccccccccc
Confidence 766665 99999999999999999987764
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.5e-11 Score=112.76 Aligned_cols=444 Identities=10% Similarity=0.048 Sum_probs=267.4
Q ss_pred cCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH
Q 006281 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 196 (652)
.+...|-....-=..++++..|..+|+....-. ..+...|-.-+.+=.++..+..|..+|++....-...|..-| -.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHH
Confidence 334444433333334555666666666665443 224455555555556666666666666665543222222222 122
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 276 (652)
.+--..|++..|.++|++-..- .|+..+|++.|+.-.+.+.++.|..+++...- +.|++.+|--..+.--+.|.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 2223345566666666555543 23355555555555555666666666655544 24555555555555555555
Q ss_pred HHHHHHHHHHHHhc-CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHH
Q 006281 277 VFEREVVLKKKRKL-GV-APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354 (652)
Q Consensus 277 ~~~a~~~~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~ 354 (652)
...+..+|+...+. |- ..+...|++...--.++..++.|.-+|+..++.-+.. .+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~------------------ra----- 279 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG------------------RA----- 279 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------------------cH-----
Confidence 55555555544332 10 0011111111111122333344444443333321110 11
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH--------HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV--------YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 355 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
...|..+...--+-|+.....+. ++.+...++. |-.+|--.++.-...|+.+...++|++.
T Consensus 280 ----------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 280 ----------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred ----------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22233333332333443333222 3344444433 7778888888888899999999999999
Q ss_pred HHcCCCCCHH--HHHHHH--------HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHH
Q 006281 427 KRKGLDPDVS--FYNSLM--------EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF----SEVGEIEGALRL 492 (652)
Q Consensus 427 ~~~~~~p~~~--~~~~ll--------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~ 492 (652)
+.. ++|-.. .|...| -.-....+.+.+.++++..++. ++-...||.-+--.| .++.+...|.++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 875 344211 121111 1113568899999999999884 455556666555554 467899999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (652)
+...+ |..|...+|...|..=.+.++++.+..++++.++.++. +-.+|...+..-...|+.+.|..+|+-+.+.|..
T Consensus 427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 99988 77899999999999999999999999999999999987 8888988888888999999999999998886542
Q ss_pred c-h--hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 573 S-D--SHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 573 ~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
. + .|-+.+.--...|.+++|..+|+.+++..+...
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 1 1 233555555789999999999999999877654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=2.1e-13 Score=135.07 Aligned_cols=289 Identities=11% Similarity=0.019 Sum_probs=202.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (652)
..+..|+++.|.+.+....+..-.| ...+........+.|+++.|.+.+.++.+....+...........+...|++++
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 3445677777776666544432111 222333344457888899999999888775433222222233567788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-------KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 491 (652)
|...++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999988887544 6677888888888999999999999998887533222 133333444444455566666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
+++.+.+. .+.+......+...+...|+.++|.+++++..+... ++... ++.+....++.+++.+.+++..+ .|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77766443 234777888888999999999999999998887433 44322 23333455889999999988876 66
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.++.....++..+.+.|++++|.+.++++.+..|+... +..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777889999999999999999999999999888643 33488889999999999999886544
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=4.1e-13 Score=133.59 Aligned_cols=511 Identities=13% Similarity=0.088 Sum_probs=300.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChh
Q 006281 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155 (652)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 155 (652)
+..|..|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 56688899999999999999999999998 9998888888888899999999988888877665 67888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHH-HHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (652)
+|..|..+|...||+.. .+..++ |. .+...+...|-......++..+.-..+..|+ .. ..+.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd-a~---n~il 147 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPD-AE---NAIL 147 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchh-HH---HHHH
Confidence 99999999999998766 222222 22 1233444445444445555444433122222 11 2333
Q ss_pred HHHccCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 235 GFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
...-.|-++.+++++..++.... .|-.. +++-+..... -..++........-.|+..+|..++++....|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 44556777888888777654321 11111 2443333222 23333333322211688999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 393 (652)
.|..++..|.+.|.+.+...|-.++.. .++...+..++..|.+.|+.|+..|+...+..+.++|....+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g--~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-------- 291 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG--INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-------- 291 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc--CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------
Confidence 999999999999999998866555544 6778888889999999999999999999888877755522221
Q ss_pred CCCCcCHHHHHHHHHHHHhcC-----CHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 394 NDYFTDMESYNVMVSFLCTSG-----RLR-----EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g-----~~~-----~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
.+.. ....+++-+..-+-.| +.+ -....+.+..-.|+.....+|...... ...|.-++..++...+..
T Consensus 292 e~sq-~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 292 EGSQ-LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred cccc-hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcC
Confidence 1221 2222222222222222 111 112222222223444344445433332 336777777777766653
Q ss_pred cC--C-CCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCCCCCCHh------------
Q 006281 464 SG--C-SGNLKTYNILISKFSEVGE----------------------IEGALRLFHNMLEKGVAPDAT------------ 506 (652)
Q Consensus 464 ~~--~-~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~m~~~~~~p~~~------------ 506 (652)
-- . ..++..|..++.-|.+.-+ ..+..++.... .||..
T Consensus 370 pt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 370 PTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHH
Confidence 21 1 1234445554444433211 11111111111 22211
Q ss_pred ----------------hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 006281 507 ----------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD- 569 (652)
Q Consensus 507 ----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 569 (652)
.-+.++..|++.-+..++...-++ .+...- +..|..+++.+..+.+.+.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ek-ye~~lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEK-YEDLLF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 112233334444344444333222 222211 146777777777777777777777776441
Q ss_pred ---CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 570 ---LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 570 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
.-+..-+..+.+.+.+.+....+..+++++.+.-.+.+ ......+.......|+.+...+..+-+...|+..
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 11223445677777777777778777777776433222 2233335566667777777777777666666654
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=5.8e-13 Score=117.46 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=244.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHH
Q 006281 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSF 409 (652)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 409 (652)
.|-.-++.+.....++|.++|-+|.+.+. -+..+.-++.+.|.+.|..|.|+++.+.+.+..-.+. ....-.|..-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 45556667777888999999999988532 2455566788889999999999999999988622111 1244567788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCC
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGE 485 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 485 (652)
|...|-+|.|..+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999876532 456778899999999999999999999988753333 2356667777777889
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
.+.|..++.+..+.+.+ ++..-..+.+.....|+++.|++.++.+.+.++..-+.+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999987544 44444557778889999999999999999999888888999999999999999999999999
Q ss_pred hhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh---cCCCCchHHHHHHHHHHcccccC
Q 006281 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS---SSSYPEPILLLLHALQEKCLDSE 642 (652)
Q Consensus 566 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~g~~~~ 642 (652)
+.+....+.....+........-.+.|...+.+-....|+. ..+..|++.-. ..|.+.+-+..++.|....++..
T Consensus 275 ~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~--~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 275 AMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM--RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH--HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 98877777777777777766666788888888888888876 33344666543 45668888899999998888887
Q ss_pred CCC
Q 006281 643 IGA 645 (652)
Q Consensus 643 ~~~ 645 (652)
|.+
T Consensus 353 ~~Y 355 (389)
T COG2956 353 PRY 355 (389)
T ss_pred CCc
Confidence 754
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=3.5e-13 Score=133.49 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=198.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|+++.|...+.++.+....+...........+...|+++.|...++.+.+..+. +......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 555677777777777765432222222223356788899999999999999988765 7788889999999999999999
Q ss_pred HHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 421 GVIQEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+++..+.+.+..++. .+|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999988755322 12333344444455566677777766543 2567888899999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
++..+. .|+.... ++.+....++.+++.+..++..+..+. |+..+..+...+.+.|++++|.+.|+.+.+..++.
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 999874 4455322 334444669999999999999988886 88889999999999999999999999999876777
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..+..++.++.+.|+.++|.+++++....
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78889999999999999999999988664
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=7.1e-13 Score=132.10 Aligned_cols=293 Identities=10% Similarity=-0.031 Sum_probs=205.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
-.+..|+++.|.+.+....+.. |+ ...+-....+....|+.+.|.+.+....+....+.....-.....+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3455677777777777665543 33 23333445667788999999999998876543333334444577788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN-ILIS---KFSEVGEIEGALRLF 493 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~ 493 (652)
.|...++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999888543 6677888888999999999999999999988633 333332 1111 223333334444455
Q ss_pred HHHHHCCC---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH-HHHHHhcCCHHHHHHHHHHhhh-
Q 006281 494 HNMLEKGV---APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF-MISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 494 ~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..+.+... +.+...+..+...+...|+.++|.+.+++.++..+......+..+ .......++.+++.+.+++..+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55554322 137788888889999999999999999999887765332211111 1222345778889999988776
Q ss_pred CCCCc--hhHHHHHHHHhccccHHHHHHHHH--HHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 569 DLGHS--DSHVILLKSLADAREVEMAIEHIK--WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 569 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.|.++ ....++++.+.+.|++++|.++++ ...+..|++. .+..++..+.+.|+.++|.+++++....
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666 666799999999999999999999 5666777653 3446999999999999999999976544
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=9.5e-13 Score=131.21 Aligned_cols=256 Identities=12% Similarity=0.027 Sum_probs=185.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|+.+.|...+.+..+....+....-......+...|+++.|...++.+.+..+. +..++..+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHH
Confidence 344566666666666554432222223333466788899999999999999988755 7778889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 421 GVIQEMKRKGLDPDVSFYN-SLMEAC---CREDLLRPAKKLWDQMFASG---CSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 208 DIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999988754 333231 111111 23333333444555555442 1247888999999999999999999999
Q ss_pred HHHHHCCCCCCHhh--H-HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHH--h
Q 006281 494 HNMLEKGVAPDATT--Y-TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCRRGHFLVATKLLRG--L 566 (652)
Q Consensus 494 ~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~ 566 (652)
++..+.. ||... + ....-.....++.+.+.+.+++..+..+. ++ ....++...+.+.|++++|.+.|+. .
T Consensus 287 ~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 287 FDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 9999763 34331 1 11222234468889999999998887766 66 7888999999999999999999994 5
Q ss_pred hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 567 SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.+..+++..+..++..+.+.|+.++|.+++++...
T Consensus 364 ~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 364 CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666778999999999999999999998654
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-13 Score=134.06 Aligned_cols=285 Identities=15% Similarity=0.084 Sum_probs=232.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
+..+|+..|..+.+ .+.-+......+..+|...+++++|.++|+.+.+..+ .-+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 67889999998444 3444557788888999999999999999999987632 12667888887655332 22333
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006281 423 I-QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (652)
Q Consensus 423 ~-~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 501 (652)
+ +++.+.. +-.+.+|.++.++|.-+++.+.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 3 3333332 3367899999999999999999999999999864 447889999999999999999999999998843
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 502 AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 502 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
.| +-..|-.+...|.+.++++.|.-.|+++++.++. +..+...+...+.+.|+.|+|+++++++.. +|.++-.-...
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 2335556777899999999999999999999987 778888899999999999999999999876 88888888889
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 640 (652)
+..+...+++++|+..++++.+.-|+. ..++..++..|.+.|+.+.|+.-+--+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999988 455666999999999999999888877765443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2e-11 Score=113.19 Aligned_cols=323 Identities=13% Similarity=0.058 Sum_probs=175.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR--EFI 303 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll 303 (652)
...+....-.+.+.|....|...|...... .+-.-..|..|... ..+.+.+..+. .|...|...+. .+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 444444455566777778888877776653 11233333333222 22222222111 12222222221 122
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCC
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNK 380 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~ 380 (652)
.++-.....+++.+-.+.....|++.....-+.... .+.+.|+++|+.+|+++.+... .-|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344445566666666666666666655544333322 2445567777777777666531 12455565554 333322
Q ss_pred hHH---HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 381 SDE---LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 381 ~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
-.. |..++ .+.+ . -+.|+..+.+-|.-.++.++|...|+...+.+.+ ....|+.+..-|...++...|.+-
T Consensus 313 skLs~LA~~v~-~idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-Hhcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 211 11111 1111 1 2335556666666666666677777666665433 345566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
++..++.+ +.|-..|-.|.++|.-.+.+.-|+-.|++....... |...|.+|.++|.+.++.++|++.|+.++..+-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 66666654 556666666666666666666666666666654222 5666666666666666666666666666655543
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+...+..|++.|.+.++.++|.+.+++-.+
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666666666666666666666665443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2e-12 Score=120.41 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=144.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++....|.+..+.+.. ++.+|..-.....-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 34566677777777776665442 223555666677777777777777777766533 4555655555666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
.=|++.+... +-++..|-.+..+..+.++++++...|++.+.. ++-.+..|+.....+...++++.|.+.|+.++...
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777777654 445566666666666777777777777777764 44456677777777777777777777777776543
Q ss_pred CC-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 536 VM-------LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 536 ~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+. +.+.+-..++..- =.+++..|+++++++.+ +|....++..++..-.+.|+.++|++++++....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 1122222222221 23777777777777766 6666677777777777778888888877776554
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.1e-15 Score=142.71 Aligned_cols=254 Identities=16% Similarity=0.158 Sum_probs=108.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 342 SSIDPRSAIVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
..|++++|+++++.......+| +...+..+...+...++++.|...++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 3455555555554433333222 3344444555666788889999999888876544 55567777776 6888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 499 (652)
+++.+..+. .+++..+..++..+.+.++++++.++++.+... ..+.+...|..+...+.+.|++++|++.+++.++.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 988877655 346667778888888999999999999987754 23567778888889999999999999999999876
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHH
Q 006281 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVI 578 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 578 (652)
.+. |......++..+...|+.+++.++++...... ..++..+..+..++...|+.++|..++++... .|.++.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 332 57778888888999999999888888766654 23666788899999999999999999999877 7778888889
Q ss_pred HHHHHhccccHHHHHHHHHHHHh
Q 006281 579 LLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
++.++...|+.++|.++.+++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-----------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999998887654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.1e-13 Score=134.10 Aligned_cols=291 Identities=13% Similarity=0.059 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 006281 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (652)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (652)
+..+|...|..+..+ +.-+......+.++|...+++++|..+|+.+.+..+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 345666666664333 2222244455666777777777777777766654221
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006281 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (652)
Q Consensus 356 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 434 (652)
..-+...|.+.+=.+-+ +-+.. +-+.+.+... -.+.+|.++.++|.-+++.+.|++.|++..+.... .
T Consensus 386 -----rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-f 454 (638)
T KOG1126|consen 386 -----RVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-F 454 (638)
T ss_pred -----cccchhHHHHHHHHHHh----hHHHHHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-c
Confidence 11122333333211110 01111 1122333322 26789999999999999999999999999876322 6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
..+|+.+..-+.....+|.|...|+..+... +.+-.+|..|...|.++++++.|+-.|+...+.+.. +.+....+...
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~ 532 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRI 532 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHH
Confidence 7888888888888999999999999988543 333445556778899999999999999999976544 66777778888
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+.+.|+.++|+++++++...++. ++..-...+..+...+++++|++.++++.+ -|.....+..++.+|.+.|+.+.|+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999887 666666678888999999999999999988 6777888999999999999999999
Q ss_pred HHHHHHHhcCCCCcH
Q 006281 594 EHIKWIQESSPTMLQ 608 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~ 608 (652)
..+.-+...+|....
T Consensus 612 ~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 612 LHFSWALDLDPKGAQ 626 (638)
T ss_pred HhhHHHhcCCCccch
Confidence 999999999987644
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.6e-11 Score=110.85 Aligned_cols=312 Identities=11% Similarity=0.038 Sum_probs=222.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHhcCC
Q 006281 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT--IDDDVLNALIGSVSSID 345 (652)
Q Consensus 268 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 345 (652)
..++-...+.+++..-.+.+...|...+...-+....+.....++++|+.+|+.+.+..+- .|..+|+-++-.- .+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--ND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hh
Confidence 3445555566666666666666665554444444444555667777777777777766321 1233343333211 11
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
...+.++.+-...=-+--+.|...+.+-|.-.++.++|+..|+...+.+.. ....|+.+..-|...++...|++-++.
T Consensus 312 -~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 -KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred -hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111222222111111223456777777888889999999999999998765 677899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
..+.... |-..|-.|..+|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|.+....|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 9987544 88899999999999999999999999999874 678899999999999999999999999999987644 66
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNH----DV-ML-ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 579 (652)
..+..|.+.|-+.++.++|.+.|++.++. |. .+ .......|..-+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~---------- 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG---------- 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------
Confidence 88999999999999999999999987662 22 22 2223334666678889999988766555442
Q ss_pred HHHHhccccHHHHHHHHHHHHhc
Q 006281 580 LKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.-..++|..+++++...
T Consensus 537 ------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ------ETECEEAKALLREIRKI 553 (559)
T ss_pred ------CchHHHHHHHHHHHHHh
Confidence 12346677777776654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=2.8e-11 Score=110.56 Aligned_cols=291 Identities=13% Similarity=0.029 Sum_probs=230.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
+..+..|++..|.++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+....++...+-+........|+++
T Consensus 92 l~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 92 LLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 33456788888888888866666544 33455556677788999999999999988755667777788888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-------KTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~ 490 (652)
.|..-..++.+.+.. ++........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999988755 6778888999999999999999999999998755443 46777777777776666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 006281 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-D 569 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 569 (652)
..|+...+. .+-++..-.+++.-+.+.|+.++|.++.++.++++..+. .. ......+-++.+.-++..++... .
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 777776654 444677778888899999999999999999999887765 22 22234567778877777777655 5
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|.++..+.+|+..|.+.+.|.+|.+.++.+.+..|+. ..++.++++|.+.|+.++|.+..++....
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6677788899999999999999999999999988876 44555999999999999999999887744
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=5.5e-10 Score=100.10 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=118.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (652)
+.-+...+++..|+.+++.-...+-+-...+-.=+..++.+.|++++|...+..+... -.++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5667788899999999887765543222233333456677889999999999888764 355667777777777777888
Q ss_pred hhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (652)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 250 (652)
.+|..+-....+ ++..-..++....+.++-++...+.+.+... ..-..+|.......-.+.+|.+++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888877655432 2233334444455667777776666666543 1222335555555567788888888
Q ss_pred HHhhCCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 006281 251 ELRIRECKPDFIAYRI-VAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 251 ~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
.+... .|+-...|. +.-+|.+..-++-+.++++-...
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 88765 344444444 33466677777777777766554
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.3e-12 Score=113.80 Aligned_cols=248 Identities=15% Similarity=0.173 Sum_probs=146.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCC
Q 006281 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV------SFYNSLMEACCREDL 450 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~g~ 450 (652)
-.++.++|.+.|-+|.+.... +..+--+|.+.|-+.|..|.|+.+.+.+.++ ||. ...-.|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 346667777777777765332 3444556667777777777777777776654 331 122334445666677
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHcCCCHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT----TYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~ 526 (652)
+|.|+++|..+.+.+ .--....-.|+..|-...+|++|+++-+++...+-.+... -|.-|...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777776543 3334556666777777777777777777666654443322 24445555555666777777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+++++.+.++. ....--.+.+.....|++..|.+.++.+.+. |. .+.+...|..+|.+.|+.++.+..+.++.+..+
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777666655 4444445666666777777777777766652 22 123344666677777777777777777776666
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+...... +...-....-.+.|..++.
T Consensus 281 g~~~~l~--l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 281 GADAELM--LADLIELQEGIDAAQAYLT 306 (389)
T ss_pred CccHHHH--HHHHHHHhhChHHHHHHHH
Confidence 5533322 3333333333444444444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=6.7e-11 Score=108.10 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=194.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 423 (652)
||.+.+-.++.+..+..-.++....-.........|+.+.|..-++.+.+.+.. ...+.....++|.+.|++.....++
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHH
Confidence 444555555555544433445555566667778889999999888888887765 6778888899999999999999999
Q ss_pred HHHHHcCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 424 QEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 424 ~~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
.++.+.|.-.++ .+|+.++.-+...+..+.-...|+..... .+.++..-..++.-+.++|+.++|.++.++.
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999998865443 35677777666666666666677766554 2556677778888899999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhH
Q 006281 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 576 (652)
.+.+..|. . ...-.+.+.++...-.+..++-.+..+. ++..+.+|...|.+.+.+.+|...|+......++...+
T Consensus 290 Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 290 LKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDY 364 (400)
T ss_pred HHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH
Confidence 88877666 2 2223566788888888888887776665 67889999999999999999999999888877788899
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Q 006281 577 VILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..++.++.+.|+..+|.+..++...
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999888763
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-10 Score=110.10 Aligned_cols=260 Identities=13% Similarity=0.049 Sum_probs=130.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+..+++.+..++.+...+... +....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--|...|+.++|.
T Consensus 255 y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHH
Confidence 334556666666655554432 22223333333555555555555554555444322 4445555555555556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
+.|.+....... =...|..+...|+-.|..++|...+...-+.= +-..--+--+.--|.+.++.+-|.+.|.+...
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a-- 408 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA-- 408 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 666555433211 12345555555666666666665555554430 00111111223345555566666666665553
Q ss_pred CCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 501 VAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----D--VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 501 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
+.| |+...+-+.-.....+.+.+|..+|+..+.. + ......+++.|+.+|.+.+.+++|+..+++... .|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 222 3444444444444455566666666554421 0 001333455566666666666666666665544 4555
Q ss_pred chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 573 SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.++.+++-+|...|+.+.|++.+.+++...|++
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 5556666666666666666666666666666555
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=2.3e-09 Score=106.25 Aligned_cols=404 Identities=12% Similarity=0.026 Sum_probs=209.6
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
++..+|..+.-+....|+++.+-+.|++....- --....|+.+...+...|.-..|..+++........|+..+...++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 344555555555556666666666666554321 1244455666666666666556666665544433333333322222
Q ss_pred H-HHH-ccCCHHHHHHHHHHHHcCC--CC--CCHHHHHHHHHHHh-----c-------CChhHHHHHHHHHHHcC-CCCC
Q 006281 304 L-GLI-VERRICEAKELGEVIVSGK--FT--IDDDVLNALIGSVS-----S-------IDPRSAIVFFNFMIEKG-RVPT 364 (652)
Q Consensus 304 ~-~~~-~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~-----~-------~~~~~a~~~~~~m~~~~-~~~~ 364 (652)
. .|. +.+.++++.++..+++... .. ..+..+..+--.|. . ....++++.+++..+.+ ..|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 2 222 2355555555544444411 00 01111111110010 0 02345566666665544 2333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~ 443 (652)
...|-.+ -|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |. |......-+.
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 3333333 35566667777777777666644446667777766666777777777766654433 11 0000000000
Q ss_pred HHHhcCChhhHHHHH-------H-------------------HHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 444 ACCREDLLRPAKKLW-------D-------------------QMFAS--GCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~-------~-------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
.-...++.+++.... + .+.-. .....+.++..+..-....+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 001112222222111 1 11100 0111233444333333221111110001
Q ss_pred HHHCCCCC--C------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 496 MLEKGVAP--D------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 496 m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+...-+.| + ...|......+.+.+..++|...+.++....+. ....|......+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22222222 2 224555666777778888887777776665543 56667777777788888888888887776
Q ss_pred h-CCCCchhHHHHHHHHhccccHHHHHH--HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 568 S-DLGHSDSHVILLKSLADAREVEMAIE--HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 568 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
. +|..+++..+++.++.+.|+..-|.. ++..+.+.+|.+. ..|..++..+.+.|+.+.|.+-|+...+.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~-eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH-EAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6 77788888888888888887766666 8888888888774 44555888888888888888888766554
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.4e-12 Score=113.57 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=189.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 403 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
-+.+.++|.+.|.+.+|...|+.-.+. .|.+.||..|-++|.+..++..|+.++.+-.+. ++-++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366889999999999999999988876 567778888899999999999999999988876 35566556667778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
.++.++|.++|+...+... .++....++...|.-.++++.|+.+|+++++.|.. ++..|..+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999887643 26777777888888899999999999999999987 888999999999999999999888
Q ss_pred HHHhhh----CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 563 LRGLSS----DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 563 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+++.. .....+.|..++......|++..|.+.++-++..++++. ..++.|+-.-.+.|+++.|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH-HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887765 223456788888888999999999999999999988884 44555888888999999999999877664
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-09 Score=104.79 Aligned_cols=491 Identities=14% Similarity=0.046 Sum_probs=260.0
Q ss_pred CCHHHHHHhhhhhhcc-ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLLT-HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
++.+...++++..... ..+.|.- |+.+-.+..-++..--.+.+++.-.|+++.|-.++..-.-. ..|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f---~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALF---WADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHH---HHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 4444455555433222 2333332 33344455566766778888888888888888777654332 3567777777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 205 (652)
..++.+..+++.|..++..... .-++..|-.-=. ...-..+.+. ++.. +......+-.--..|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccH
Confidence 7888888888888888873310 001111110000 0000111111 0000 000111111111223344555
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC----CcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC----KPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
++|...+.+.... .+.....+..++... +-.+.+.|+.+..... +-+......+.........-++..
T Consensus 158 ~~ar~~Y~~Al~~---D~~c~Ea~~~lvs~~-----mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~ 229 (611)
T KOG1173|consen 158 EEARDKYKEALLA---DAKCFEAFEKLVSAH-----MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL 229 (611)
T ss_pred HHHHHHHHHHHhc---chhhHHHHHHHHHHH-----hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence 6666666555543 111112222222211 1112122222221100 001111111111110000000000
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
..-.+..-.+..-+......-..-+...+++.+..++.+.+.+..+......--.+-..+..|+..+-..+-.++.+. .
T Consensus 230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-y 308 (611)
T KOG1173|consen 230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-Y 308 (611)
T ss_pred ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-C
Confidence 000000111222233333344445556677777777777776654433333322333445556655555555555544 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYN 439 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~ 439 (652)
+-...+|-++.--|...|+..+|.+.|.+....+.. =...|-.+...|+-.|..++|+..+...-+. |.. -+..|
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY- 385 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY- 385 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH-
Confidence 334566777766677778888888888776654332 3347777788888888888888777766554 211 11222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHhhHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVAP----DATTYTSLLE 513 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~ 513 (652)
+..-|.+.++.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..
T Consensus 386 -lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 -LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 3345667788888888888777653 556677777777767777888888888777632 1111 2345667777
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|.+.+.+++|+..+++.+...+. +..++.+++..|...|+++.|++.|.+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 788888888888888888777766 777888888888888888888888887766
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.5e-10 Score=115.88 Aligned_cols=483 Identities=13% Similarity=0.075 Sum_probs=292.7
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006281 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (652)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 184 (652)
.++-.+...|+.|+..+|..+|..|+..|+.+.|- +|..|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999999 9999988777778889999999999999888776
Q ss_pred CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhh-CCCCcCHHH
Q 006281 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI-RECKPDFIA 263 (652)
Q Consensus 185 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~ 263 (652)
.|...||..++.+|...||+.. |+...+. ...+...+...|.-..-..++-.+.- .+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veqd----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQD----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHHH----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 6788999999999999999876 3333321 01134455566666655566555432 234566554
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-H
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVLNALIGS-V 341 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 341 (652)
. +.-..-.|-++.+++++..+......- .+..+++-+... ..+++-..+...... .+++.++.+++.. .
T Consensus 145 ~---illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 A---ILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 2 333444566666666665543221110 111123333322 223333333332222 5777788777765 5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421 (652)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 421 (652)
..|+.+.|..++.+|.+.|.+.+..-|..++-+ .++...++.++..|.+.|+.|+..|+...+..+..+|....+.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~- 291 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE- 291 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-
Confidence 678899999999999999988888877777644 7888888888888889999999988888777777655422211
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Chh-----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 422 VIQEMKRKGLDPDVSFYNSLMEACCRED-----LLR-----PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (652)
.|. +....+++-...-.-.| +.+ .....+.+..-.|+......|...+.. ..+|.-++..+
T Consensus 292 -------e~s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veq 362 (1088)
T KOG4318|consen 292 -------EGS-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQ 362 (1088)
T ss_pred -------ccc-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHH
Confidence 111 12222222222211122 111 111112222222433334444443332 23566666666
Q ss_pred HHHHHHHC--CCCC-CHhhHHHHHHHHHc----------------------CCCHHHHHHHHHHhhh-------------
Q 006281 492 LFHNMLEK--GVAP-DATTYTSLLEGLCQ----------------------ETNLQAAFEVFNKSVN------------- 533 (652)
Q Consensus 492 ~~~~m~~~--~~~p-~~~~~~~l~~~~~~----------------------~g~~~~a~~~~~~~~~------------- 533 (652)
+-..|..- ...+ ++..|..++.-|.+ ..+..+..++......
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST 442 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH
Confidence 66555421 1111 23334433333322 1112222222221100
Q ss_pred ---CCCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 534 ---HDVML-------ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 534 ---~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
....| -..+-+.++..+++.-+..+++..-++.... .-+..|..++.-+..+...+.|....+++...+
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 00111 1233455566666666666666555555442 123567789999999999999999999988765
Q ss_pred CCC--cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 604 PTM--LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 604 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
... ....+..+.+.+.+.+...++.++++++++
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 432 234456699999999999999999999987
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-08 Score=100.81 Aligned_cols=467 Identities=13% Similarity=0.027 Sum_probs=308.2
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCChhhH-------------------HHH----HHHHHhCC
Q 006281 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL---ASDGYIDNA-------------------LKM----FDEMSHRG 184 (652)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~m~~~~ 184 (652)
..+..+.++.-+......+...++.++-.+-..+ ...++.+.+ .-. +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666665555554554444433322 223333333 221 22222233
Q ss_pred CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHH-H
Q 006281 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-A 263 (652)
Q Consensus 185 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 263 (652)
+.-|...|..+.-++...|+++.+.+.|++...- .......|+.+...|...|.-..|..+++.-......|+.. .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~---~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF---SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4557778888887888899999999999999865 44556788888889999999999999998876554334433 3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhc--C----CCCChhhHHHHHHHHHc----cC-------CHHHHHHHHHHHHcC
Q 006281 264 YRIVAEEFK-LMGSVFEREVVLKKKRKL--G----VAPRTNDYREFILGLIV----ER-------RICEAKELGEVIVSG 325 (652)
Q Consensus 264 ~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~----~~p~~~~~~~ll~~~~~----~~-------~~~~a~~~~~~~~~~ 325 (652)
+-..-..|. +.+..++++++-.+.... + +.|- .|..+.-+|.. .. ...++.+.++..++.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 333334443 457778888877776652 1 2222 33333333322 11 234567778888777
Q ss_pred CCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 006281 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (652)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (652)
+.......|...+.+..+++...|++...+..+-+..-+...|..+.-.+...+++.+|+.+.+...+.-.. |......
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 766666778888888888999999999999999877778889999988899999999999999987764211 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---------------------CC-----CC--CHHHHHHHHHHHHhcCC-hhhHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRK---------------------GL-----DP--DVSFYNSLMEACCREDL-LRPAKK 456 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~---------------------~~-----~p--~~~~~~~ll~~~~~~g~-~~~a~~ 456 (652)
-+..-..-++.++++.....+... |. .| ...++..+..-....+. ......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 222223356666666555544321 00 00 01122211111110000 000000
Q ss_pred HHHHHHHcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006281 457 LWDQMFASGCSG--N------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (652)
Q Consensus 457 ~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (652)
+....+.| + ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 11111122 2 2245566677888999999999998888652 235556666667788899999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH--HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATK--LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..++..++. ++.+..++..++.+.|+..-|.. ++..+.+ +|.++.+|..++..+.+.|+.+.|.+.|.-+.+..+.
T Consensus 708 ~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 708 LVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999988887 77889999999999998777777 8888887 8999999999999999999999999999999998877
Q ss_pred CcHH
Q 006281 606 MLQE 609 (652)
Q Consensus 606 ~~~~ 609 (652)
.+..
T Consensus 787 ~PV~ 790 (799)
T KOG4162|consen 787 NPVL 790 (799)
T ss_pred CCcc
Confidence 6543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=1.8e-11 Score=126.85 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=177.2
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT---------SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 450 (652)
++++|...|++..+..+. +...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 456788888888776543 45556555554442 24578999999999887543 67778888888889999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
+++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999875 556778888889999999999999999999876433 222333444456678899999999998
Q ss_pred hhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
++....+-++..+..+..++...|++++|.+.+.++... +........++..|...| ++|...++++.+..-..+..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 877653335666777888889999999999999887664 334445556777777777 47777777766542221111
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
... +...|.-.|+.+.+.-. +++.+.|
T Consensus 510 ~~~-~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL-LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH-HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111 44445566776666555 7777653
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=5.6e-08 Score=94.44 Aligned_cols=437 Identities=9% Similarity=0.075 Sum_probs=241.9
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 120 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
..|...+..+..+|++......|+..... .+.....+|...+......+-++.+..++++.++.. +..-.-.+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 34555556666667777777777665432 333344567777777777777777777777776542 2234455666
Q ss_pred HHhcCcHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHccCCHHHH---HHHHHHHhhCCCCcCH--HHHHHHHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRE----NSMINGSVIAVLIIHGFCKGKRVEEA---FKVLDELRIRECKPDF--IAYRIVAE 269 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~m~~~~~~p~~--~~~~~ll~ 269 (652)
++..+++++|.+.+..+...+ ...+.+...|..+.+..++.-+.-.- ..++..+..+ -+|. ..|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 677777777777776665431 11233344455444444443332222 2223333222 2332 35777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCH----------------------HHHHHHHHHHHcCCC
Q 006281 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI----------------------CEAKELGEVIVSGKF 327 (652)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------------------~~a~~~~~~~~~~~~ 327 (652)
.|.+.|.+++|..+|++....- .+...|..+..+|..-... +-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 7777777777777777655432 2223344444444332111 111122222222110
Q ss_pred -----------CCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006281 328 -----------TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP------TLSTLSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 328 -----------~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
+.++..|..-+ .+..++..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV-~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRV-KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhh-hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 00111111111 12345566667777776653 211 134567778889999999999999999
Q ss_pred HHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhcCC
Q 006281 391 LSANDYFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-----------------DVSFYNSLMEACCREDL 450 (652)
Q Consensus 391 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~g~ 450 (652)
..+...+.- ..+|......-.+..+++.|+.+.+......-.| +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 887654321 2356666666677888999999888765431111 22345555555566778
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHc---CCCHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQ---ETNLQAAFE 526 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~ 526 (652)
++....+++++.+..+. ++........-+-.+.-++++.++|++-+..=.-|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888888888876432 2222222222333455677788888776654333443 356665554432 336888888
Q ss_pred HHHHhhhCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 527 VFNKSVNHDVMLARS--ILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|+++++ +.+|... +|-.....-.+.|....|+.+++++..
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888887 4433321 222233333356777777777776544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=4.7e-12 Score=111.81 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY-NSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~ 443 (652)
..--+.+.++|.+.|.+.+|.+.|+...+.. |-+.+|-.|-++|.+..++..|+.++.+-.+. .|..+|| .-+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3334567889999999999999999988764 45568888999999999999999999998876 5666665 44556
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 523 (652)
.+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.+.++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 6778899999999999999875 677888888888899999999999999999999988 88899999999999999999
Q ss_pred HHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 524 AFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 524 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
++.-|++++..--.| -.++|..+.......|++.-|.+.|+-... ++....+++.|+-.-.+.|+.++|..++..+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999987754333 456799999999999999999999998766 77788899999999999999999999999999
Q ss_pred hcCCCCcHHHHH
Q 006281 601 ESSPTMLQEISA 612 (652)
Q Consensus 601 ~~~~~~~~~~~~ 612 (652)
...|......+|
T Consensus 457 s~~P~m~E~~~N 468 (478)
T KOG1129|consen 457 SVMPDMAEVTTN 468 (478)
T ss_pred hhCccccccccc
Confidence 999987666665
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1.1e-07 Score=92.52 Aligned_cols=537 Identities=10% Similarity=0.057 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+..|-.-++.+.++++....+..|+..... .+.--..+|...+......+-++-+..++++..+. ++..-+--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677777888888888888876654 23334457888888888888889999999988765 5555777788
Q ss_pred HHHhcCChhhHHHHHHHHHhCC------CccCcccHHHHHHHHHhcCcH---HHHHHHHHHHHhccCCCCC-chhhHHHH
Q 006281 163 VLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMIN-GSVIAVLI 232 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~-~~~~~~~l 232 (652)
.+++.+++++|-+.+....... .+.+...|..+-+...+.-+. -....+++.+... .++ -...|.+|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 8899999999999888876432 122334454444444443222 2233444444433 222 24578899
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhc
Q 006281 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS----------------------VFEREVVLKKKRKL 290 (652)
Q Consensus 233 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------------------~~~a~~~~~~~~~~ 290 (652)
.+-|.+.|.+++|..+|++.... ..++.-|..+.++|+.... ++-...-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999987654 1233444555555443211 11222223333322
Q ss_pred CC-C-------CChhhHHHHH-HHHHccCCHHHHHHHHHHHHcC-CCCC----CHHHHHHHHHHHhc-CChhHHHHHHHH
Q 006281 291 GV-A-------PRTNDYREFI-LGLIVERRICEAKELGEVIVSG-KFTI----DDDVLNALIGSVSS-IDPRSAIVFFNF 355 (652)
Q Consensus 291 ~~-~-------p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~-~~~~~a~~~~~~ 355 (652)
+. - -|.......+ +.-+..|+..+....+.+.++. .+.. -...|..+-..|.. |+.+.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11 0 0111111111 1122244555555555555443 1111 11235555565654 688999999988
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----------------cCHHHHHHHHHHHHhcCC
Q 006281 356 MIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF-----------------TDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 356 m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~ 415 (652)
..+-..+-- ..+|......-.+..+++.|.++.+......-. .+...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776543322 344555555556777888888887776532111 123355666666666788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSE---VGEIEGALR 491 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~ 491 (652)
++....+++++.+..+- ++........-+-.+.-++++.+++++-+..=-.|++ ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888889988877653 3333323333344556678888888877665223443 467766665554 236788999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHH--HHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEG--LCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+|++.++ |+.|...-+-.|+-+ =-+.|....|+.+++++.. .+.+. -..|+.+|.-....=.......+++++.
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999988 666654333333222 2245778888888887543 33322 2346666554443333444555666655
Q ss_pred hCCCCch---hHHHHHHHHhccccHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 568 SDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQES-SPTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 568 ~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+.-++.. .....+..-.+.|..+.|..+|....+. +|......|+..=..-.++|+-+-..++++
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5323222 2335566667888888888888887775 566666777766666678888555555553
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=8.9e-11 Score=108.69 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555666666666666666666554421 134444555555555555555555555555443 3334444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+...|++++|.+.+++..+....| ....+..+...+...|++++|...+++.+...+. +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555554321111 1223333344444444444444444444443322 23333344444444444444
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
|.+.+++... .+..+..+..++..+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444333 1222233333333444444444444443333
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=5.8e-11 Score=109.97 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 35667778889999999999999999998764 556788889999999999999999999999976433 5667888888
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDV-MLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
.+...|++++|.+.+++++.... ......+..+..++...|++++|.+.+++... .|..+..+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887542 22455677889999999999999999999877 56667788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|.+.++++.+..|... ..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876654 44445888888999999999998887654
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=7.5e-08 Score=93.87 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 467 SGNLKTY--NILISKFSEVGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 467 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
+|+...| -.++..|-..|+++.|..+++..+++ .|+. ..|..-.+.+...|++++|..+++++.+.+.. |..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHH
Confidence 4444443 34566777888888888888888754 5553 34555567788888888888888887777653 65555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCch--------hHH--HHHHHHhccccHHHHHHHHHHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSD--------SHV--ILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~--~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
...+.-..+.++.++|.+++.....+..+.. .|. .-+.+|.+.|++-.|+.-+..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5677777788888888888877766432221 121 23456666777666655444443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=1.6e-08 Score=98.44 Aligned_cols=425 Identities=12% Similarity=0.012 Sum_probs=210.0
Q ss_pred hcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHH
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 245 (652)
..+++...++..+.+.+. ..-...|....--.+...|+.++|.......... .+.+.+.|..+.-.+....++++|
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHH
Confidence 445666677777766663 2222333333333355567777777777666655 555666676666666666677777
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHc
Q 006281 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVS 324 (652)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (652)
.+.|......+. -|...|.-+.-.-++.|+++.....-..+.+. .|+ ...|..+..+..-.|++..|..+.+...+
T Consensus 95 iKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 95 IKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665432 24555555544445555655555544444432 122 22333344444445555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhCCCCc
Q 006281 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS------KNLCKRNKSDELVEVYKVLSANDYFT 398 (652)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~ 398 (652)
... ..|+...+.... ....+.|.++.|.+.+......-+.
T Consensus 172 t~~---------------------------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D- 217 (700)
T KOG1156|consen 172 TQN---------------------------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD- 217 (700)
T ss_pred hhc---------------------------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-
Confidence 321 123333332221 1234556666666665554432111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhhHH-HHHHHHHHcCCCCCHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC-REDLLRPAK-KLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l 476 (652)
....-..-...+.+.+++++|..++..++.. .||..-|...+..+. +-.+.-++. .+|....+. .|....-..+
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rl 293 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRL 293 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhc
Confidence 2222233445566677777777777777766 455555544443333 222222232 445444432 1221111111
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH----HHHHHHHhhhCC----------CCccHH
Q 006281 477 ISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA----AFEVFNKSVNHD----------VMLARS 541 (652)
Q Consensus 477 ~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~----------~~~~~~ 541 (652)
--......+ .+..-.++..+.+.|+.+--..+. ..|-.....+- +..+...+-..+ -+|...
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~---SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR---SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH---HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 111111122 233334455555666543322222 22221111111 111111110110 022333
Q ss_pred H--HHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 542 I--LSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 542 ~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
. +..++..+-+.|+++.|..+++.+.. .|..++-|..-++++...|++++|...++++.+.+-.+. .+-...+...
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR-~INsKcAKYm 449 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR-AINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH-HHHHHHHHHH
Confidence 3 23345556667777777777777766 344445566666777777777777777777777665442 2222355666
Q ss_pred hcCCCCchHHHHHHHHHHccc
Q 006281 619 SSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~~g~ 639 (652)
.+.++.++|.++..++...|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 677777777777776666554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=5.3e-11 Score=123.40 Aligned_cols=216 Identities=17% Similarity=0.047 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 414 GRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACC---------REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (652)
+..++|+..|++..+. .|+ ...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3468999999999987 444 445555554443 2345789999999999886 66788888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
|++++|...|++..+.+.. +...+..+...+...|++++|...++++++.++. +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999987433 5667888889999999999999999999998876 3334444555677789999999999
Q ss_pred HHhhh-C-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 564 RGLSS-D-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 564 ~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+++.. . |..+..+..++.++...|++++|.+.++++....|... ...+.+...|...|+ +|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL-IAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH-HHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99875 3 44566678899999999999999999999988877764 444557778888884 888888887664
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=7.9e-08 Score=86.58 Aligned_cols=455 Identities=12% Similarity=0.013 Sum_probs=236.4
Q ss_pred ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHH
Q 006281 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 140 (652)
+.+..-|..+.++.... +-.-...+=..+..++.+.|++++|..++..+.+.. .++...+-.|.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 34566777777766422 211222233345556678999999999999887755 5777777778777778888999988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccC
Q 006281 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (652)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 220 (652)
+-....+ ++-.-..|+..-.+.++-++-..+-+.+.+. ...-.++.......-.+.+|+.++..+...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8665532 3334445556666777776666665555432 122223444444556789999999999877
Q ss_pred CCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 006281 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300 (652)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (652)
.|.-...-..+.-+|.+..-++-+.+++.--.+. ++.+....|..+....+.=.-..|+.-..++...+-.. |
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 3332222233556788888888888888776654 22234445544444444222222222223332221100 0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380 (652)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 380 (652)
..+.-+++.+-+ .-.+-+.|++++-.+... .|. .-..++--|.+.++
T Consensus 254 ~f~~~l~rHNLV-----------------------------vFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 254 PFIEYLCRHNLV-----------------------------VFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQND 300 (557)
T ss_pred hhHHHHHHcCeE-----------------------------EEeCCccHHHhchHHHhh--ChH--hhhhheeeeccccc
Confidence 001111111000 000112333333222211 111 11123334556666
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChh
Q 006281 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-------RLREAYGVIQEMKRKGLDPDVS-FYNSLMEACCREDLLR 452 (652)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~ 452 (652)
+.+|..+.+++... .|-....-.++ ++..| ...-|.+.|+-.-..+..-|.. --.++..++.-..+++
T Consensus 301 VqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 301 VQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 66666665544321 11111111111 11222 2334444444433333222211 1233344444445666
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHcCCCHHHHHHHHHHh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS-LLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~ 531 (652)
+.+-.++.+..-=...|...+| +.++++..|++.+|+++|-+.....++ |..+|.+ |.++|.+.++++.|+.++-++
T Consensus 377 dVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 6666666665543233444443 667777777888888777776644444 4555544 445667777777777766543
Q ss_pred hhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHH
Q 006281 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577 (652)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (652)
-. +.-.-..+..+..-|.+.+.+--|-+.|+.+....++++.|.
T Consensus 455 ~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 455 NT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred CC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 21 111223345555667777777767777766665444555553
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.4e-08 Score=91.70 Aligned_cols=192 Identities=12% Similarity=-0.016 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
...++++.|+.+-++.++...+ +...|..-...+...|++++|.-.|+.....- +-+..+|..|+.+|...|++.+|.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHH
Confidence 3344555555555555544322 33333333344455556666665565555432 345556666666666666666655
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-HHHH-cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 491 RLFHNMLEKGVAPDATTYTSLL-EGLC-QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
-.-+..... +..+..+...+. ..|. ...--++|.+++++.+...+. -......+...+...|..++++.++++...
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 554444332 122333333331 1221 222335555555555554443 223344455555666666666666666655
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.++..-+..|+..+...+.+.+|.++|..++..+|.+
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 55555555566666666666666666666666666655
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.4e-08 Score=97.65 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH--------HhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN--------KSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
.+.+|.+++...-+....-.......++......|+++.|.+++. ...+.+. .+.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 467777777777654322224455556666778889999888888 3333333 344666777777777776
Q ss_pred HHHHHHHHHhhh----CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH
Q 006281 557 LVATKLLRGLSS----DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 557 ~~A~~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 628 (652)
+-|..++.++.. ...... .+..++..-.+.|+-++|..+++++.+.+|++...+.. ++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~-lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ-LVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH-HHHHHHhc-CHHHHH
Confidence 666666665533 111112 22234444466789999999999999988888666665 77777655 345555
Q ss_pred HHH
Q 006281 629 LLL 631 (652)
Q Consensus 629 ~~~ 631 (652)
.+-
T Consensus 512 ~l~ 514 (652)
T KOG2376|consen 512 SLS 514 (652)
T ss_pred HHh
Confidence 443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-07 Score=86.05 Aligned_cols=268 Identities=10% Similarity=0.016 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTI--DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 372 (652)
|.+....+..++...|+..+|...|+.....++.. ....|..++ -..|+.+....+...+....- .+...|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL--~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL--GQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH--HhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 33444455555555566666655555554321110 001111111 123455555555555443321 1222222223
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 452 (652)
...-...++..|..+-++.++.+.. +...|-.-..++...|++++|.-.|+..+.... -+...|.-|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 3344567788888888887776443 445555555777888888888888888776531 25678888999998888888
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILI-SKFS-EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+|.-+-+...+. ++.+..+.+.+. ..+. ....-++|..+++.... +.|+ ....+.+...|...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 888777666554 245556655552 3332 22334778888877664 3454 3455667777888888888998888
Q ss_pred HhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
+.+... ||....+.|.+.+...+.+.+|...|..+.. +|.+
T Consensus 463 ~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 766543 5777888888888888888888888887766 5443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.5e-10 Score=97.80 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 517 (652)
...|...|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++....... +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3444455556666666666666666554 444555556666666666666666666665544322 34445555555555
Q ss_pred CCCHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
.|++++|.+.|++++... ..-...+|..++.+..+.|+.+.|.+.+++..+ +|..+.....++....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666555433 111233555555555666666666666665555 455555555666666666666666666
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++......+-. ....-..+.+-.+.|+-+.+-++=..+.
T Consensus 196 ~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66555555422 2222223333444555555544444333
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3e-09 Score=101.26 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM----- 442 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 442 (652)
...+.++.-+..+++.+.+.+....+.. .+..-++....+|...|.+.++........+.|.. ...-|+.+-
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456667777888889999888888765 36666777778888888888888887777766543 233333333
Q ss_pred --HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 443 --EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 443 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
.++.+.++++.++..|.+.......|+. ..+....++++...+...-.+..- ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3555667888899888887665333332 223344555665555554332221 1222233667889999
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+..|+..|.+++..++. |...|....-+|.+.|.+.+|++=.+...+ +|.....|..-+.++....+|++|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976 899999999999999999999998888777 6666777888888888889999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHhhc
Q 006281 600 QESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~ 620 (652)
++.+|+.. .....+..++..
T Consensus 453 le~dp~~~-e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNA-EAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhH-HHHHHHHHHHHH
Confidence 99999874 333335555443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=2.1e-07 Score=93.32 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=64.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
|++++|+.+++..++.. |+ ...|..-.+.+-..|++.+|.+.++.....+.. |-..-+..+..+.+.|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444432 22 344455555666667777777777666665544 555555666666667777777777
Q ss_pred HHHHHHcCCCCCHHH--------HHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 423 IQEMKRKGLDPDVSF--------YNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
+....+.+..|-... ..-...+|.+.|++..|++.|..+.+
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665543322111 13334556666666666655554443
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-06 Score=89.28 Aligned_cols=127 Identities=7% Similarity=0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhH
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNK------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC 157 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 157 (652)
..-+..+.+.|.+.|-...|.+.+..+.... ...++. -+-.|.-.-.++.+.+.++.|...+++.+..+.
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE----wLv~yFg~lsve~s~eclkaml~~NirqNlQi~ 681 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE----WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIV 681 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH----HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3346788888999998888887766553321 001111 112233445678888888888877777666666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC-----------CCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 158 NSLLAVLASDGYIDNALKMFDEMSHR-----------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
-.+..-|...--.+..+++|+..... ++.-|+...-..|.+.|+.|.+.+..++.++
T Consensus 682 VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 682 VQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 55555565555566667777766532 3455666777778888888888777766543
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.7e-11 Score=80.52 Aligned_cols=49 Identities=45% Similarity=0.875 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5556666666666666666666666666666666666666666666654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=7.5e-09 Score=98.17 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=147.6
Q ss_pred CChHHHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 379 NKSDELVEVYKVLSAND-YFT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 111 2345777778888889999999988888877533 5778888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+.|+...+.. +.+..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|.+.|++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999888764 445677888888888889999999999988865 3333212222222345678899999987655433
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSS--------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
. ++ .+. ........|+..++ +.++.+.. .+..+..|..++.++.+.|++++|+..|+++.+.+|.+
T Consensus 196 ~-~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 196 D-KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred C-cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2 12 121 12233345555443 23333321 22344578889999999999999999999999988754
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.1e-11 Score=80.09 Aligned_cols=49 Identities=37% Similarity=0.785 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.6e-07 Score=85.76 Aligned_cols=456 Identities=14% Similarity=0.087 Sum_probs=220.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHH--H
Q 006281 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL--LAVL--A 165 (652)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~--~ 165 (652)
-++.+...+++++|.+...++...+ +-+...+..=+-++.+.+.+++|+.+.+.-.. ..+++.. =.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3455666777777777777777765 55555666666667777777777755443211 1122221 2333 3
Q ss_pred hcCChhhHHHHHHHHHhCCCccCc-ccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHH
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFST-IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 244 (652)
+.+..++|+..++ |..++. .+...-.+.+.+.|++++|+.+++.+.+. +....+...-..++.+-.. -.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~----l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAA----LQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHh----hh
Confidence 5566777777666 222222 24444555666777777777777777665 2222222222222221110 11
Q ss_pred HHHHHHHHhhCCCCcCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCC-------CC------Chh-hHHHHHHHHH
Q 006281 245 AFKVLDELRIRECKPDFIAYRI---VAEEFKLMGSVFEREVVLKKKRKLGV-------AP------RTN-DYREFILGLI 307 (652)
Q Consensus 245 A~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~-------~p------~~~-~~~~ll~~~~ 307 (652)
+. +.+... ..| ..+|.. ....+...|++.+|+++++.....+. .- ... .-..+...+.
T Consensus 161 ~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222 122 122322 23344556777777777766522110 00 000 0011222333
Q ss_pred ccCCHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 308 VERRICEAKELGEVIVSGKFTIDDDV---LNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
..|+..+|..++..++.......+.. .|-++..-...++- .++..++... ..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~-----------------------~~ 292 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV-----------------------FK 292 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHH-----------------------HH
Confidence 44555555555555554443322111 11111110000000 0111111100 00
Q ss_pred HHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhhHHHHHH
Q 006281 383 ELVEVYKVLSANDYFTDMESY-NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--REDLLRPAKKLWD 459 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~ 459 (652)
.+......+.... . ..... +.++..|. +..+.+.++....... .|.. .+.+++..+. +......+.+++.
T Consensus 293 l~~~~l~~Ls~~q-k-~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQ-K-QAIYRNNALLALFT--NKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred hHHHHHHHHHHHH-H-HHHHHHHHHHHHHh--hhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0111111111100 0 11111 22223222 3344555554443322 3333 3333443332 2224667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH--------NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
...+..-.......-.+++.....|+++.|++++. ...+.+..|- +...+...+.+.++-+.|..++.++
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHH
Confidence 76655312224455566677788899999999888 4454444443 4455666677777777777777766
Q ss_pred hhCC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 532 VNHD--VML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 532 ~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
+..- -.+ -..++..++..-.+.|+-++|..+++++.. +|++......++.+|.+. +.++|..+-+++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 5421 111 122344445555677999999999999988 777888887888777653 5667776665544
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=2.7e-08 Score=99.54 Aligned_cols=289 Identities=17% Similarity=0.135 Sum_probs=142.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHH-HHHHHHHHhc-
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLM- 274 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~- 274 (652)
..+...|++++|++.++..... .++...........+.+.|+.++|..++..+.+++ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3455666666666666655544 44444555556666666666666666666666653 333333 3333333111
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 006281 275 ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (652)
Q Consensus 275 ----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (652)
.+.+....+++++...- |.......+.-.+.....+. ..+.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~---------------------------------~~~~ 131 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFK---------------------------------ERLD 131 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHH---------------------------------HHHH
Confidence 13444455555544332 22222211111111111111 1233
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------------CCCcCHHHH--HHHHHHHHhcC
Q 006281 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------------DYFTDMESY--NVMVSFLCTSG 414 (652)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~--~~li~~~~~~g 414 (652)
.++..+..+|+++ +|+.+-..|....+.+-..+++...... .-.|+...| .-+...|...|
T Consensus 132 ~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 132 EYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 3444455555443 3333333344333333333444333211 011233223 33445566666
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|.+.++.....+ .-|-..=+-.+..+.+.|++++|.+++
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777766665 333 4556666666666677777777766666654 345555555566666667777777666
Q ss_pred HHHHHCCCCCCHhhH--------HHHHHHHHcCCCHHHHHHHHHHh
Q 006281 494 HNMLEKGVAPDATTY--------TSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
......+..|....+ .-...+|.+.|++..|++.|..+
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666554433322111 22345566666666666665544
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.23 E-value=6.7e-07 Score=91.57 Aligned_cols=563 Identities=10% Similarity=-0.042 Sum_probs=299.7
Q ss_pred hhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHH
Q 006281 59 YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138 (652)
Q Consensus 59 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (652)
+.+.+...|+..|-...+... .=...|..+-+.|....+...|..-|+...+.+ ..+......+.+.|++..+++.|
T Consensus 469 ~~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 334455556665555533221 112457777777777778888888888888776 56777788888999999999998
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 006281 139 FSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217 (652)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 217 (652)
..+.-...+.. ...-..-|-.+.-.|.+.++...|+.-|+...+.++ -|...|..+..+|.+.|++..|+++|.+...
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 88833322211 001112233344456677888888888888777643 3777888888888888888888888888876
Q ss_pred ccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 006281 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFKLMGSVFEREVVLKK----- 286 (652)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----- 286 (652)
. .|.+.....-..-.-+..|.+.+|+..++.+... +..--..++-.+...+...|-..++...++.
T Consensus 625 L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 625 L---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred c---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6 5555444433444556778888888887776432 1111122333333333333332233333322
Q ss_pred --HHhcCCCCChhhHHHHHHH-----------------------HHccCCH---H---HHHHHHHHHHcCCCCC-CHHHH
Q 006281 287 --KRKLGVAPRTNDYREFILG-----------------------LIVERRI---C---EAKELGEVIVSGKFTI-DDDVL 334 (652)
Q Consensus 287 --~~~~~~~p~~~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~-~~~~~ 334 (652)
...+....+...+..+-.+ +-..+.. + .+.+.+-.-. .... ....|
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~Wy 779 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWY 779 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHH
Confidence 2222111111111111111 1111111 0 0000000000 0001 11224
Q ss_pred HHHHHHHh------cC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 006281 335 NALIGSVS------SI--DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (652)
Q Consensus 335 ~~l~~~~~------~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (652)
|..++++. .+ +...|+..++..++..- -+..+|+.|- .....|++.-+...|-+-....+. ...+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~-~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcccc-chhheecc
Confidence 55554443 11 33355555555544321 2444555443 334446666666666555544333 55677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCHHHHHHHHHHHHh
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA----SGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 482 (652)
.-.+.+..+++.|...|...+...+. +...|-.........|+.-++..+|..-.+ .|-.++..-|-....-...
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 77777788888888888877765322 445555554445566777777777765221 1323444444444444455
Q ss_pred cCCHHHHHHHHHH----------HHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCccHH----HHHHHH
Q 006281 483 VGEIEGALRLFHN----------MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS----ILSTFM 547 (652)
Q Consensus 483 ~g~~~~A~~~~~~----------m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~ 547 (652)
.|+.++-+...+. ... |..-+...|.......-+.+.+..|.++..+.+..= ...+.. .-..+.
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 5655543333322 222 233355666666666666777777777666543210 111222 233455
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCCc
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFASLSSSSYPE 625 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 625 (652)
+.++..|.++.|...+....... +..+ ....-+..-.|+++++.+.++++.....+. ..++...++......|..+
T Consensus 1015 RL~lslgefe~A~~a~~~~~~ev-dEdi-~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEV-DEDI-RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhH-HHHH-hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 56667777777666554433210 0001 011111244678888888888887654332 2344455666666777778
Q ss_pred hHHHHHHHHHHc
Q 006281 626 PILLLLHALQEK 637 (652)
Q Consensus 626 ~a~~~~~~~~~~ 637 (652)
.|.+.+-+....
T Consensus 1093 ~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSL 1104 (1238)
T ss_pred HHHHHHHHHHHh
Confidence 887777666554
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.8e-08 Score=87.24 Aligned_cols=317 Identities=10% Similarity=0.021 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 006281 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (652)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (652)
+++.+.-+.+..+++.|++++....++.. .+....+.+..+|....++..|...++++... .|.......--...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 44445555555556666666555544421 13444455555555566666666666666544 232222111223445
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE--EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 314 (652)
.+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5667777777777776653 23222222222 2234566666777666654322 12222222223456788888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHH
Q 006281 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST----LSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
|.+-|....+-+--.....||..+..|++++...|++...+++++|++..+.. ....+++ ...|+. ..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~---- 234 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV---- 234 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH----
Confidence 88888777766555566778888888999999999999999988876422111 0000000 000000 00
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 006281 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (652)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 469 (652)
|...+ -...+|.-...+.+.|+++.|.+.+-+|.-+. ...|++|...+.-. --.+++.+..+-+.-+...+ +-.
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 00000 11234444455667888888888888775332 23466666544322 22355666666666666654 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
..||..++-.||+..-++.|..++.+-
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 678888888888888888887777653
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.7e-08 Score=85.73 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
+...+.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|+...... +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4556777888889999999999988887433 55678888888889999999999998888775 566777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
.+|++++|...|++....-.-| -..+|..+.-+..+.|+++.|...|++.++.++. .+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8899999999998888652222 2457777877888889999999999998888876 5556677888888889999999
Q ss_pred HHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 561 KLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 561 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.+++..... +...++....+.+-...|+.+.|-+.=.++....|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888888773 34555666667777788888888888888888777764
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.6e-06 Score=84.52 Aligned_cols=121 Identities=10% Similarity=0.093 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCh
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 154 (652)
+...|..+.+.|.+.++.+-|.--+..|.... .+-+...-..+.......|..++|..+|.+-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 55667777777777777766655555443221 0111122222333334557777777777776542
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHH
Q 006281 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215 (652)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 215 (652)
..|=..|-..|.+++|.++-+.--.-.+ ..||.....-+-..+|.+.|++.|++.
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2333445556777777766554322222 234444444455566777777766644
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1e-08 Score=101.23 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHc-----C--CC
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRK-----GL-DPDVSF-YNSLMEACCREDLLRPAKKLWDQMFAS-----G--CS 467 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~ 467 (652)
+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666655433 21 122222 233555667777777777777776642 2 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CC
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEK-----GVA-PDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHD---VM 537 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~ 537 (652)
--..+++.|..+|.+.|++++|..++++..+- |.. |.. ..++.++..|+..+++++|..++++.++.- +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345666667777888887777777665531 111 111 234556666777888888888887665421 22
Q ss_pred c----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---------CCCchhHHHHHHHHhccccHHHHHHHHHHHHh---
Q 006281 538 L----ARSILSTFMISLCRRGHFLVATKLLRGLSSD---------LGHSDSHVILLKSLADAREVEMAIEHIKWIQE--- 601 (652)
Q Consensus 538 ~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 601 (652)
+ -..++..|...|...|++++|.++++++... .....++..++..|.+.+++.+|.+++.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2456888888888888888888888877541 11123455788888888888877777766443
Q ss_pred -cCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 602 -SSPTML--QEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 602 -~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.+|+.+ ...|..|+..|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234332 3445568888999999999998887765
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=1.7e-08 Score=95.78 Aligned_cols=219 Identities=11% Similarity=0.000 Sum_probs=157.7
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 413 SGRLREAYGVIQEMKRKG-LDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356778888888887543 2222 3457777888999999999999999999875 66789999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...|++.++.... +..+|..+..++...|++++|.+.|++.++.++. ++. .......+...+++++|.+.+++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999976433 4677888888899999999999999999988765 331 222223345678899999999765442
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHH-------hcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQ-------ESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
. +++.|. ........|+...+ +.++.+. +..|.. ...|..++..+...|++++|...+++..+..+
T Consensus 195 ~-~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERL-CETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 122222 23333445555443 2344433 223333 23455599999999999999999998887643
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1e-08 Score=101.22 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN-----DY-FTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRK-----GL- 431 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~- 431 (652)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666788889999999999988877653 21 12322 3344677889999999999999988653 21
Q ss_pred CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 006281 432 DPD-VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----G-CSGNL-KTYNILISKFSEVGEIEGALRLFHNMLEK---G 500 (652)
Q Consensus 432 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~ 500 (652)
.|. ..+++.|..+|.+.|++++|...+++..+- | ..|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 346777888899999999988888776542 1 12222 34667777888999999999999877642 1
Q ss_pred CCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC----C---CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 501 VAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD----V---MLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 501 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
+.++ ..+++.|...|...|++++|.++|++++... . .-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578889999999999999999999987632 1 11244578899999999999999998886532
Q ss_pred -------CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 569 -------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 569 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.|....++..|+..|...|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22333467789999999999999999998876
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=1.4e-06 Score=89.27 Aligned_cols=506 Identities=11% Similarity=-0.057 Sum_probs=240.7
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 006281 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179 (652)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 179 (652)
...+...|-+..+.. +.-...|..|-..|+...+...|.+.|+...+.... +...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444433 122335666666666666777777777777655322 556677777888888888887777333
Q ss_pred HHhCCC-ccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 006281 180 MSHRGV-EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258 (652)
Q Consensus 180 m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (652)
.-+... ..-...|..+--.|.+.++...|..-|+...+. .|.|...|..+..+|.++|++..|.++|.+.... .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 222210 001111222222345567777777777777755 7778888888888888888888888888776653 3
Q ss_pred cCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHc------
Q 006281 259 PDFIAYRI--VAEEFKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEVIVS------ 324 (652)
Q Consensus 259 p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------ 324 (652)
|+. +|.. ....-+..|.+.+++..+...... +..--..++..+...+...|-...+.++++.-++
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 432 2222 222345567777777777665432 1111112333333333333333333333333221
Q ss_pred -CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHhCCCC
Q 006281 325 -GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---D---ELVEVYKVLSANDYF 397 (652)
Q Consensus 325 -~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~ 397 (652)
.....+...|-.+ ..|..+|.+.. .+ .|+......+..-..+.+.. + .+.+.+-.-.. ..
T Consensus 706 ~h~~~~~~~~Wi~a---------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVA---------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HHhhhhhHHHHHHH---------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1111111111111 11222222222 11 22222222222212222211 1 11111111111 11
Q ss_pred cCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 006281 398 TDMESYNVMVSFLCT----S----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (652)
Q Consensus 398 ~~~~~~~~li~~~~~----~----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 469 (652)
.+...|..++..|.+ . .+...|+..+.+..+..-. +..+|+.|.-. ...|++.-+.-.|-.-.... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 123344444443333 1 1233566666665554322 55566655443 44455555555555544443 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh--h--hCCCCccHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS--V--NHDVMLARSILST 545 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~~~~~~~~~ 545 (652)
..+|..+.-.+.+..+++-|...|.......+. +...|..........|+.-+...+|... . ..+-.+....|.+
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 556666666666777777777777766654222 4445544444444556666666666541 1 1222233333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-----------hCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh-----cCCCCcHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLS-----------SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE-----SSPTMLQE 609 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 609 (652)
....-...|+.++-+...+++. ..|....+|.+.+......+.++.|.+...++.. .+.+..++
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333444555444333333221 1344445555555555556666655555444321 11122222
Q ss_pred HHHHHHHHhhcCCCCchHHHH
Q 006281 610 ISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~ 630 (652)
.-..++..++..|.++.|...
T Consensus 1009 ak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhh
Confidence 333355556666666655443
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=4.8e-07 Score=81.32 Aligned_cols=298 Identities=13% Similarity=0.083 Sum_probs=186.2
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS-NLSKNLCKRNKSD 382 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~ 382 (652)
..+...|++..|+.-|...++..+..-...|...-.++..|...-|+.-+...++. +||-..-. .-...+.+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 33444455555555555554442222222232223334444444444444444432 33321111 0112356777777
Q ss_pred HHHHHHHHHHhCCCCcCH--H------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 383 ELVEVYKVLSANDYFTDM--E------------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~--~------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 448 (652)
.|..=|+.+.+....... . .....+..+...|+...|+.....+++..+ -|...|..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhc
Confidence 777777777765432111 1 112233445566888888888888887643 3677777778888888
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh----HHHH---------HHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT----YTSL---------LEGL 515 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l---------~~~~ 515 (652)
|++..|+.=+....+.. ..+..++--+-..+...|+.+.++...++.++ +.||... |..+ +...
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776654 45556666667777788888888888888774 3555432 1111 1223
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
...+++.++.+..+..++..+... ...+..+-.++...|++.+|++...++.+ +|.+..++.--+.+|.-...++.
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 456778888888888777765522 23355566677788899999999998887 66667888888899998899999
Q ss_pred HHHHHHHHHhcCCCCc
Q 006281 592 AIEHIKWIQESSPTML 607 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~ 607 (652)
|+.-|+++.+.++++.
T Consensus 360 AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 360 AIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHhcCcccH
Confidence 9999999999888764
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=8.6e-07 Score=78.16 Aligned_cols=396 Identities=14% Similarity=0.101 Sum_probs=220.7
Q ss_pred CcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHH-
Q 006281 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI- 266 (652)
Q Consensus 188 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 266 (652)
..--+.+++..+.+..+++.|++++....+. .|.+....+.|..+|....++..|-..++++... .|...-|..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 3344566676777888888888888877766 5555666677788888888888888888887664 455554543
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 006281 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (652)
Q Consensus 267 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (652)
-...+.+.+.+..|+.+...|... |+...-..-+.+.+ .|+.+|+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI--------------------------------kYse~Dl 128 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI--------------------------------KYSEGDL 128 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH--------------------------------hcccccC
Confidence 234566677777777777666442 11111111111111 1333444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+-......|+..+ ++.+.|+++.|++...++
T Consensus 129 ~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 129 PGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEI 204 (459)
T ss_pred cchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 44444444443222 22222222223446777777777777776654333445565544 344557777788777777
Q ss_pred HHcCCCC-------------CH---------------HHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHH
Q 006281 427 KRKGLDP-------------DV---------------SFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILI 477 (652)
Q Consensus 427 ~~~~~~p-------------~~---------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 477 (652)
+++|++- |+ ..+|.-...+.+.|+++.|.+.+..|.-. .-..|+.|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 7766431 11 11222223345778888888888777532 1234555554443
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHh-cCC
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCR-RGH 555 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~ 555 (652)
-.- ..+++.+..+-++-+.+...- ...||..++-.||+..-++.|-.++-+-...-.. .++..|+ |++++.- .-.
T Consensus 285 l~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~ 361 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTA 361 (459)
T ss_pred Hhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCC
Confidence 222 234566666666666655443 4568888888999988888888877653222211 2233333 4455443 345
Q ss_pred HHHHHHHHHHhhhCCCCchhHH-HHHHHH-----hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 556 FLVATKLLRGLSSDLGHSDSHV-ILLKSL-----ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~-~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
.++|.+-++.+.... ..-.. ..+... .......+|++-+++.++.. -+++ ...++.|.+..++.-+++
T Consensus 362 pEea~KKL~~La~~l--~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVl-Ma~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 362 PEEAFKKLDGLAGML--TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVL-MAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHH-HHHHHhhccccccHHHHH
Confidence 677776665553310 00000 111111 11112334455555555543 1233 337788889999999999
Q ss_pred HHHHHHH
Q 006281 630 LLHALQE 636 (652)
Q Consensus 630 ~~~~~~~ 636 (652)
.|+.-.+
T Consensus 436 ~Fr~Sve 442 (459)
T KOG4340|consen 436 IFRKSVE 442 (459)
T ss_pred HHHHHHh
Confidence 8876443
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1.5e-06 Score=85.96 Aligned_cols=168 Identities=14% Similarity=0.198 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006281 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487 (652)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (652)
.+-.....+.+|+.+++.++..... .--|..+..-|+..|+++.|.++|.+.- .++--|..|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 3444455566666666655544221 2234445555666666666666654332 2334455566666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 488 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.|.++-++.. |.......|..-..-+-+.|++.+|.++|-.+ + .|+. .+..|-++|..++.+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554443 33333444444444455556666665555321 1 1221 2345555555555555554432
Q ss_pred hCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
-+ ...++...++.-+...|+...|.+.+-+
T Consensus 878 ~d-~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 878 GD-HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hh-hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 21 1122334455555555555555555433
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.2e-08 Score=98.09 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=105.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.+.|++.+|.-.|+...+.... +...|..|.......++-..|+..+.+..+.. +.|......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444444444444444222 33444444444444444444444444444443 334444444444444444444455
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-----------HHHHcCCCHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHH
Q 006281 491 RLFHNMLEKGVAPDATTYTSLL-----------EGLCQETNLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
..++.-+...++ |..+. ..+..........++|-++.... ..+|+.+...|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444322100 00000 01111112333344444433322 23455566666666666666666
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
|+..|+.+.. +|.+...|+.|+..+....+.++|++.|.++++..|....+.|| |+-.|.-.|.+++|.+.|=.+..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHH
Confidence 6666666555 45555556666666666666666666666666666666555555 55556666666666665554443
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=5e-05 Score=85.49 Aligned_cols=416 Identities=12% Similarity=-0.001 Sum_probs=243.4
Q ss_pred hhhHHHHHHHHHhCCCc--c-C----cccHHHHHHHHHhc----CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc
Q 006281 170 IDNALKMFDEMSHRGVE--F-S----TIGFGVFIWKFCEN----AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~--~-~----~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (652)
.+.+..+++++...|+- + + .+.|..++.-+.+. .+.++...+ .......+..
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------------h~raa~~~~~ 353 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------------HRAAAEAWLA 353 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------------HHHHHHHHHH
Confidence 34456777777777641 1 1 24566666554432 112222222 2223444666
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 006281 239 GKRVEEAFKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317 (652)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 317 (652)
.|++.+|.......... +-. .............|+++.+...++.+.......+..........+...|+++++..
T Consensus 354 ~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 354 QGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred CCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 77777776654443211 000 11111223344567777777776654221111122222333445566789999888
Q ss_pred HHHHHHcCCCCC----C--HH-HHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHH
Q 006281 318 LGEVIVSGKFTI----D--DD-VLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTL----STLSNLSKNLCKRNKSDEL 384 (652)
Q Consensus 318 ~~~~~~~~~~~~----~--~~-~~~~l~--~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 384 (652)
.++.....-... + .. ....+. .....|++++|...+++..+.-...+. ...+.+...+...|+++.|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 887765431111 1 11 111222 224568999999999887763222221 2344555667789999999
Q ss_pred HHHHHHHHhC----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChh
Q 006281 385 VEVYKVLSAN----DY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLD--P-DVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 385 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--p-~~~~~~~ll~~~~~~g~~~ 452 (652)
...+.+.... +. .....++..+...+...|++++|...+++.... +.. + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9998887642 11 111234556667788899999999998876543 211 1 1233445556677789999
Q ss_pred hHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH-----HHHHHHHHcCCCHH
Q 006281 453 PAKKLWDQMFAS--GCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTY-----TSLLEGLCQETNLQ 522 (652)
Q Consensus 453 ~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~~~~g~~~ 522 (652)
+|...+++.... ...+ ....+..+...+...|++++|.+.+++....... .....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999999887653 1112 2344555667788899999999999888642111 011111 11223445688999
Q ss_pred HHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----CchhHHHHHHHHhccccHHHH
Q 006281 523 AAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A 592 (652)
.|.+++........... ...+..+..++...|++++|...++++... .+ .......++.++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876554222111 112456777888999999999999887541 11 122455788888999999999
Q ss_pred HHHHHHHHhcCCC
Q 006281 593 IEHIKWIQESSPT 605 (652)
Q Consensus 593 ~~~~~~~~~~~~~ 605 (652)
...+.++.+....
T Consensus 751 ~~~L~~Al~la~~ 763 (903)
T PRK04841 751 QRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999886543
No 96
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=2.7e-07 Score=87.23 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=139.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-
Q 006281 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI- 486 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 486 (652)
.+...++.++|+.+..++++.... +..+|+.--.++...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 334455666777777776665222 2334444444445555 4577777777777654 44555566554445455542
Q ss_pred -HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc---CCH----HH
Q 006281 487 -EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR---GHF----LV 558 (652)
Q Consensus 487 -~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 558 (652)
++++.+++.+++...+ +..+|.....++...|+++++++.++++++.++. +...|+....++.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 5667777777766544 6667777777777777788888888888777776 666666666555544 222 45
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-----------
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS----------- 622 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 622 (652)
++++..++.. +|.+.++|.-+..++.. .++..+|.+...++.+.+|.. ......|++.|+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccchhhhhhhh
Confidence 6666655444 77778888877777766 244566777777777766665 345555778776532
Q ss_pred -------CCchHHHHHHHHH
Q 006281 623 -------YPEPILLLLHALQ 635 (652)
Q Consensus 623 -------~~~~a~~~~~~~~ 635 (652)
..++|.++++.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 2356777777773
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.2e-06 Score=81.16 Aligned_cols=228 Identities=12% Similarity=0.053 Sum_probs=148.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH-------HHHHHHh
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV-------MVSFLCT 412 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~ 412 (652)
++.+.++..+++-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 355668888888888877665 35555666777888888888877777766665533 2222332 3346666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 006281 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 491 (652)
.++++.|+..|++.......|+.. .+....+++....+...-. .|.. .-...=...+.+.|++..|+.
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 788999999999877665444322 2233344444444444332 2322 111222556778889999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.|.+++..... |...|....-+|.+.|.+..|+.-.+.+++.++. ....|..=+.++....++++|.+.|.+..+ +|
T Consensus 380 ~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99998877533 7778888888888999999988888888887664 444555556666667788888888888877 44
Q ss_pred CCchhHHHHHHHH
Q 006281 571 GHSDSHVILLKSL 583 (652)
Q Consensus 571 ~~~~~~~~l~~~~ 583 (652)
.+......+..++
T Consensus 458 ~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 458 SNAEAIDGYRRCV 470 (539)
T ss_pred hhHHHHHHHHHHH
Confidence 4433333333333
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=8.5e-08 Score=92.41 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=190.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
+.+.|++.+|.-.|+....+++. +...|-.|.......++-..|+..+++..+.... |......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 56788899999999988887665 7788999999999999989999999998887543 667778888888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006281 455 KKLWDQMFASGCSGNLKTYNILI-------SKFSEVGEIEGALRLFHNML-EKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (652)
...++.-+... +|-...-..=. ..+..........++|-++. +.+.++|......|.-.|.-.|++++|+.
T Consensus 373 l~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99998887643 11100000000 11112223344555555554 45555788888888888889999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.|+.++...+. |..+|+.|.-.++...+.++|+..+.++.+ .|.-..++..++-+|...|.+++|.++|-.++...+.
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999988887 888999999999999999999999999998 7888888999999999999999999999888764332
Q ss_pred ---------CcHHHHHHHHHHhhcCCCCchHHHH
Q 006281 606 ---------MLQEISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 606 ---------~~~~~~~~l~~~~~~~g~~~~a~~~ 630 (652)
....+|..|-.++...++.+-+.+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2245676666666666666644433
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=2.3e-06 Score=84.64 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCH--HHHHHHHHHH
Q 006281 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGNL--KTYNILISKF 480 (652)
Q Consensus 404 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 480 (652)
..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++.....- .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445556666666666666666655322 344555555666666666666666666554321 1221 2344555566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006281 481 SEVGEIEGALRLFHNML 497 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~ 497 (652)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 66666666666666654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=2.5e-06 Score=84.46 Aligned_cols=260 Identities=10% Similarity=0.018 Sum_probs=168.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCRE 448 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 448 (652)
.+...|+++.|.+++++..+..+. +...+.. ...+.. .+..+.+.+.+... ....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 456778999999999988876443 4444442 222222 34455555555441 122333 33445566778899
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHcCCCHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDA--TTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 525 (652)
|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999875 56677888999999999999999999999886532 2232 34557888899999999999
Q ss_pred HHHHHhhhCCCC-ccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHhhhC-CCC--chhHHHHHHHHhccccHHHHHHH
Q 006281 526 EVFNKSVNHDVM-LARSIL-S--TFMISLCRRGHFLVATKL---LRGLSSD-LGH--SDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 526 ~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
.+++++....+. +..... . .++..+...|....+.++ ....... +.. .......+.++...|+.++|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 999998654431 122111 1 333444455644444443 2221111 111 12223677788899999999999
Q ss_pred HHHHHhcCCC---C-----cHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 596 IKWIQESSPT---M-----LQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 596 ~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
++.+...... . ...+.-....++.+.|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888663322 1 11111224445679999999999999887663
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=3.4e-05 Score=74.22 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 218 (652)
|+.+|+.|++-+-.. .++++...++++... .+-....|..-|..-.+..+++.+.++|.+...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566666666655444 666666666666543 2223445555566666666666666666666554
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=1.4e-05 Score=89.81 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=88.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-----H
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFY-----N 439 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~ 439 (652)
.+...+...|++++|...+...... +.......+..+...+...|++++|...+.+........ ....+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 3344455667777777776665432 111112234445556667777777777777664321100 00001 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD-ATTYTSL 511 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 511 (652)
..+..+...|+.+.|.+.+........... ...+..+..++...|++++|...+++.... |..++ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 112333456777777777665543211111 111344556667777888887777776542 22221 2345555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
..++...|+.++|...+.++++..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777788888888877776643
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.6e-05 Score=77.10 Aligned_cols=323 Identities=14% Similarity=0.202 Sum_probs=194.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (652)
.|+...+...+++...+-+.+.+++++++.-.. +.-+....+.||-...+. +.....+..+++..... -.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 355556667778888888888888888776432 122233344444443333 34455556665543321 12
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHcc
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (652)
+...+..++-+++|..+|+...- +......++. ..+.++.|.++-++.. .+.+|..+..+-.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhc
Confidence 34455566667888888776532 2223333332 3467777777666553 356788888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 006281 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (652)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (652)
|.+.+|.+-|-+. .|...|.-+++...+.|.+++-.+.+...++...+|... +.++-+|++.+++.+..++.
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 8888888877443 267788888888888888888888888777776666544 45777888887776655542
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006281 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 399 (652)
.-|+......+.+-|...+.++.|.-+|..
T Consensus 1190 -----------------------------------------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1190 -----------------------------------------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred -----------------------------------------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 224444555555556666666666555543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
+.-|..|...+...|+++.|.+.-++.. +..||..+-.+|...+.+.-|. |-..++.....-...++.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHH
Confidence 2345566666666666666665544432 4556666666666555444322 2222222333445556666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006281 480 FSEVGEIEGALRLFHNML 497 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~ 497 (652)
|-..|-+++.+.+++...
T Consensus 1289 Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhcCcHHHHHHHHHhhh
Confidence 666666666666666554
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=3.3e-06 Score=84.77 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=83.4
Q ss_pred cCHHhHHHHHH--HHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------C
Q 006281 117 LDSSVYRFIIP--SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-G--------V 185 (652)
Q Consensus 117 ~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~ 185 (652)
-|..|-..++. .|..-|+.+.|.+-.+.++ +..+|..+...|.+..+++-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45666666664 4667788998888887775 4578889999999988888887777666532 1 1
Q ss_pred ccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 006281 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265 (652)
Q Consensus 186 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 265 (652)
.|+ .+=..+.......|.+++|..++.+.++. ..|=..|-..|.+++|.++-+.=-+. . =..||.
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYY 862 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHH
Confidence 111 11111222234456666666666655543 11223344456666666655432111 1 112444
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 006281 266 IVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 266 ~ll~~~~~~g~~~~a~~~~~~ 286 (652)
.-...+-..++.+.|++.|++
T Consensus 863 ~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHh
Confidence 444445555566666666554
No 105
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=9.5e-07 Score=83.56 Aligned_cols=225 Identities=9% Similarity=0.047 Sum_probs=162.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL-- 451 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-- 451 (652)
+...++.+.|+.++.++.+..+. +..+|+.-..++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 44567788888888888876544 5556776666677777 578999999998887554 555676655555566653
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---CC----HHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE---TN----LQAA 524 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a 524 (652)
+++...++.+.+.. +-|..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888888776 678888988888888889999999999999987665 666777666655544 22 2567
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc------------
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRR----GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR------------ 587 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g------------ 587 (652)
+++.++++...+. +...|+.+...+... +...+|.+.+.+... .+.++.....|+..|....
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 8888788888876 788888888888773 345678888877665 4556666677888886532
Q ss_pred ------cHHHHHHHHHHHHhcCC
Q 006281 588 ------EVEMAIEHIKWIQESSP 604 (652)
Q Consensus 588 ------~~~~A~~~~~~~~~~~~ 604 (652)
..++|..+++.+.+.+|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCc
Confidence 23667777777754444
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=2.5e-08 Score=92.96 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFYNSLMEA 444 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~ 444 (652)
.....+.+++...|+.+.+. ..+.... .|.......+...+...++-+.++.-+++.......+ +..........
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 33445566777788766543 3333332 4566565555554444345555555555444333222 22222233344
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCC
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETN 520 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 520 (652)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 56678888888777542 45667777888888888888888888888854 3333 33444444332 346
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH-HHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV-EMAIEHIKW 598 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 598 (652)
+.+|.-+|+++.+. +.+++.+++.++.+....|++++|.+++.+... ++.++++...++.+....|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 88888888886544 455778888888888888888888888888766 566666666777766677766 667778888
Q ss_pred HHhcCCCCc
Q 006281 599 IQESSPTML 607 (652)
Q Consensus 599 ~~~~~~~~~ 607 (652)
+....|..+
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888764
No 107
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.95 E-value=9.5e-05 Score=75.71 Aligned_cols=538 Identities=12% Similarity=0.057 Sum_probs=270.7
Q ss_pred hhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 55 VINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 55 ~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
+.+.+-.+++..|+.-...+.++++..+ |..++.++ .+.|..++|..+++.....+. .|..+...+-.+|...
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHH
Confidence 4444445677888988888887765444 44555554 488999999988888777663 4888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhc----------
Q 006281 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN---------- 202 (652)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------- 202 (652)
+..++|..+|+..... .|+..-...+..+|++.+++.+-.+.--+|-+ +++-+.+.+-+++......
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 55667777888889998887765555444443 2333556665666554432
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHH-HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
--..-|.+.++.+.+..|......... .-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 113445666666666633222211111 12223445777888888873 3333323334444455666777777888777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-G 360 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~ 360 (652)
++-.++...|.. . |...+.. +++.+.....+|-...++.. +..+...+...+.... .
T Consensus 247 ~l~~~Ll~k~~D--d--y~~~~~s------------v~klLe~~~~~~a~~~~s~~------~~l~~~~ek~~~~i~~~~ 304 (932)
T KOG2053|consen 247 ELSSRLLEKGND--D--YKIYTDS------------VFKLLELLNKEPAEAAHSLS------KSLDECIEKAQKNIGSKS 304 (932)
T ss_pred HHHHHHHHhCCc--c--hHHHHHH------------HHHHHHhcccccchhhhhhh------hhHHHHHHHHHHhhcccc
Confidence 777777665432 1 2222111 11111111111000000000 0001111111111111 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---
Q 006281 361 RVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS--- 436 (652)
Q Consensus 361 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 436 (652)
..|-...+.. ..-+-.-|+.+++...| ++.-.. ..|..=+..|...=..++-..++...... .++..
T Consensus 305 Rgp~LA~lel-~kr~~~~gd~ee~~~~y~~kfg~k------pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~ 375 (932)
T KOG2053|consen 305 RGPYLARLEL-DKRYKLIGDSEEMLSYYFKKFGDK------PCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDE 375 (932)
T ss_pred cCcHHHHHHH-HHHhcccCChHHHHHHHHHHhCCC------cHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhH
Confidence 1111111110 01112234444433222 222111 12222222222222222223333332221 11110
Q ss_pred ----HHHHHHHHHHhcCC-----hhhHHHHHHHHH---Hc------CCCCCHH---------HHHHHHHHHHhcCCHH--
Q 006281 437 ----FYNSLMEACCREDL-----LRPAKKLWDQMF---AS------GCSGNLK---------TYNILISKFSEVGEIE-- 487 (652)
Q Consensus 437 ----~~~~ll~~~~~~g~-----~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~g~~~-- 487 (652)
-+...+..-.-.|. -+.-..++.+.. +. ++-|+.. +.+.|++.+-+.++..
T Consensus 376 k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 376 KVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 01111111111121 112222222221 11 1223322 3467778888887765
Q ss_pred -HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 488 -GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 488 -~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
+|+-+++.-.... +-|..+=..+|+.|+-.|-+..|.++|+.+--+++..|.--|. +...+...|++..+...+...
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 3444455444332 1244455567888998999999999999766566654433332 344566678888888888776
Q ss_pred hh--CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 567 SS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 567 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.. +....+.-..++.+ .+.|.+.+-.+...-=....-+. ...+-+...+.++..++.+.-...+.-|.
T Consensus 534 lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 55 11111222222333 45576766655543322222222 22333456666777777777766666554
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=8.8e-05 Score=73.96 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (652)
+.+....+.|.+|..+++.+.... .-...|..+...|+..|+++.|.++|-+. ..++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445566666666666555443 22334555556666666666666665543 1234455566666666
Q ss_pred hhHHHHHHH
Q 006281 171 DNALKMFDE 179 (652)
Q Consensus 171 ~~a~~~~~~ 179 (652)
+.|.++-++
T Consensus 808 ~da~kla~e 816 (1636)
T KOG3616|consen 808 EDAFKLAEE 816 (1636)
T ss_pred HHHHHHHHH
Confidence 666555444
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=5.6e-08 Score=90.63 Aligned_cols=248 Identities=15% Similarity=0.078 Sum_probs=162.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775544 222222223445566778889999877544 4443333 56666665555544443455555
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 455 KKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544433322 23333333345567789999999988753 3677778889999999999999999999987
Q ss_pred CCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 534 HDVMLARSILSTFMISLC----RRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
.+- | .+...++.++. -.+.+.+|..+|+++.+. +.++...+.++.++...|++++|.+.++++.+.+|.++.
T Consensus 160 ~~e--D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 IDE--D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CSC--C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred cCC--c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 652 2 34444444433 234699999999999885 455566778889999999999999999999999999887
Q ss_pred HHHHHHHHHhhcCCCC-chHHHHHHHHHHc
Q 006281 609 EISAELFASLSSSSYP-EPILLLLHALQEK 637 (652)
Q Consensus 609 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 637 (652)
.+.| ++-+....|+. +.+.+++.+++..
T Consensus 237 ~LaN-liv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLAN-LIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHH-HHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHH-HHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777 77777777777 6677888887764
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=5.1e-05 Score=68.70 Aligned_cols=305 Identities=13% Similarity=0.060 Sum_probs=137.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHH
Q 006281 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV---AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR-EFILGL 306 (652)
Q Consensus 231 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~ 306 (652)
-+...+...|++..|+.-|....+- |...|-++ ...|...|+..-|+.-+....+ .+||...-. .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 3555566667777777777766653 33333333 3455666666666655555554 345432211 112245
Q ss_pred HccCCHHHHHHHHHHHHcCCCCCCHH--H-------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 307 IVERRICEAKELGEVIVSGKFTIDDD--V-------------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (652)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~-------------~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (652)
.+.|.++.|..-|+.+++........ . ...+.+++..||...|+.....+++-. +.+...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 66777777777777777654422111 1 112223334445555555555544421 1223333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++..+. .||....-..-. .+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------kl 266 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KL 266 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HH
Confidence 44455555555555444444333222 3333334444444455555555555444443 233221100000 00
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHcCCCHHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLEGLCQETNLQAAFEVF 528 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~ 528 (652)
.+..+.++. +......++|.++++..+...+........ .+..+-.++...|++.+|++..
T Consensus 267 kKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 000000000 011223344555555555444432221111 2223333444555566666666
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+++...+. |..++..-..+|.-...++.|+.-++.+.+
T Consensus 331 ~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555554443 455555555555555556666665555544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=5.3e-07 Score=89.42 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
.-..+...+...|-...|..+|+++. .|.-++.+|+..|+..+|..+..+..+. +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888888888888764 3455677888888888888888887773 788888888888887
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
..--+++|.++.+..-.. .-..+.....+.++++++.+.|+..++.++- ...+|..+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 1111222233468889999999888877764 66788888888888999999998
Q ss_pred HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccc
Q 006281 562 LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 640 (652)
.|..... +|.+..+|+.+..+|.+.|+-.+|...++++.+-+-.+ ..++...+....+.|.+++|.+.++++.+....
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8888877 78888899999999999999999999999988887444 455655777778889999999998888776433
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=3.2e-07 Score=80.76 Aligned_cols=152 Identities=9% Similarity=0.111 Sum_probs=117.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.... |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457788888876554433221 11 0122367778888888888776433 788888898999999999
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISL-CRRGH--FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
++|...|+++...++. +..++..+..++ ...|+ .++|.+++++..+ +|.++..+..++..+...|++++|+..++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999888876 788888888864 67677 5899999998877 77788888899999999999999999999
Q ss_pred HHHhcCCCCc
Q 006281 598 WIQESSPTML 607 (652)
Q Consensus 598 ~~~~~~~~~~ 607 (652)
++.+..|...
T Consensus 169 ~aL~l~~~~~ 178 (198)
T PRK10370 169 KVLDLNSPRV 178 (198)
T ss_pred HHHhhCCCCc
Confidence 9988877654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=4e-07 Score=83.93 Aligned_cols=187 Identities=10% Similarity=-0.005 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA--TTY 508 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 508 (652)
....+..+...+...|+++.|...|+++.... +.+. ..+..+..+|...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556666777777888888888888777653 2222 35566777777788888888888887764322111 134
Q ss_pred HHHHHHHHcC--------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHH
Q 006281 509 TSLLEGLCQE--------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580 (652)
Q Consensus 509 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 580 (652)
..+..++... |++++|.+.|++++...+. +...+..+..... ..... ......++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~------------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL------------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH------------HHHHHHHH
Confidence 4444445443 5677777777777766554 2222222211100 00000 01123567
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..+.+.|++++|+..++++.+..|+.+ ...+..++.++.+.|++++|.++++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 778899999999999999998877642 3445559999999999999999998887653
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.83 E-value=0.00025 Score=72.78 Aligned_cols=493 Identities=12% Similarity=0.035 Sum_probs=275.0
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
..+++..|.+....+.+.. |+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|-..++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 6788889988888877753 443 344555554 4889999999999988766555 788999999999999999999
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC----------HH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR----------VE 243 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~ 243 (652)
..+|+..... .|+..-...+..+|.+.+++.+-.+.--++.+. .|..+..+.++++...+.-. ..
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~---~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN---FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999876 455666667777889988877666555555555 55666666666666654321 33
Q ss_pred HHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 244 EAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 244 ~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
-|.+.++.+.+.+ ---+..-...-...+-..|.+++|++++.. ..+.-..-+...-+.-+..+...+++.+..++...
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566666666553 111222222223344567778888888743 33322222333333444555566777777666666
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG-RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
+...+... | ..+.+...++++.. ..|-... ....+..+...+...+....... +
T Consensus 252 Ll~k~~Dd----y------------~~~~~sv~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~~R-g- 306 (932)
T KOG2053|consen 252 LLEKGNDD----Y------------KIYTDSVFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSKSR-G- 306 (932)
T ss_pred HHHhCCcc----h------------HHHHHHHHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhccccc-C-
Confidence 65554321 1 22222222222222 2221111 11223334444444333332111 1
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH------
Q 006281 401 ESYNVMVSFL---CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK------ 471 (652)
Q Consensus 401 ~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------ 471 (652)
.|-+-+.++ -.-|+.+++...|-+- .|-.| .|..=+..|...=..+.-..++...... .++..
T Consensus 307 -p~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l 378 (932)
T KOG2053|consen 307 -PYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVL 378 (932)
T ss_pred -cHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHH
Confidence 222222222 3457777765544322 22222 1111122222222222333333333322 11110
Q ss_pred -HHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCHh---------hHHHHHHHHHcCCCHH---HH
Q 006281 472 -TYNILISKFSEVGE-----IEGALRLFHNML---EK------GVAPDAT---------TYTSLLEGLCQETNLQ---AA 524 (652)
Q Consensus 472 -~~~~l~~~~~~~g~-----~~~A~~~~~~m~---~~------~~~p~~~---------~~~~l~~~~~~~g~~~---~a 524 (652)
.+...+..-.-.|. -+.-..++.+.. +. ++-|+.. +-+.|++.|.+.++.. +|
T Consensus 379 ~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ea 458 (932)
T KOG2053|consen 379 QQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEA 458 (932)
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 01111111111221 122223332222 12 2333332 3457788888888765 56
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh-HHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-HVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
+-+++..+..++. |..+--.+++.|+-.|-+..|.++++.+.-.....++ -..+...+...|++..+...+.......
T Consensus 459 I~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 459 ITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 6666666666554 6667778899999999999999999987543222222 2245566677899999999999988776
Q ss_pred CCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 604 PTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
.++....-. ++..-.+.|.+.+..++..
T Consensus 538 ~~~~kE~~e-yI~~AYr~g~ySkI~em~~ 565 (932)
T KOG2053|consen 538 DSSLKETPE-YIALAYRRGAYSKIPEMLA 565 (932)
T ss_pred hhhhhhhHH-HHHHHHHcCchhhhHHHHH
Confidence 555444555 4445558888888877664
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00017 Score=69.60 Aligned_cols=79 Identities=9% Similarity=0.181 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
+.|..+|+.||+-+..+ ..++++..++++... .+-+...|..-|+.-.+..+++..+.+|.+..... .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34667777777766555 777777777777664 24556667777777777777777777777765542 245555554
Q ss_pred HHH
Q 006281 161 LAV 163 (652)
Q Consensus 161 l~~ 163 (652)
+..
T Consensus 93 l~Y 95 (656)
T KOG1914|consen 93 LSY 95 (656)
T ss_pred HHH
Confidence 443
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=3.7e-07 Score=75.91 Aligned_cols=116 Identities=14% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..+|++.++. .|+ .+..+...+...|++++|...|+.++..++. +...+..+..++.+.|++++|+..++++..
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555543 333 3445666777888888888888888877765 777788888888888888888888888877
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+|.++..+..++.++...|++++|++.++++.+..|+.....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 677778888888888888888888888888888888774333
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=9.6e-07 Score=77.74 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
+-.|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567778887776544432221 11 0 1223566677777777777665 67788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HcCCC--HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGL-CQETN--LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++.++.++. +...+..+...+.+.|++++|+..+
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888876433 566677777653 56666 48888888888888876 7777888888888888888888888
Q ss_pred HHhhh-CCCCc
Q 006281 564 RGLSS-DLGHS 573 (652)
Q Consensus 564 ~~~~~-~~~~~ 573 (652)
+++.+ .|++.
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 88876 44443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=1.4e-06 Score=80.28 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 473 (652)
....+..+...+...|++++|...|+++...... |. ..++..+..++...|++++|...++.+.+.. +.+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 5667888889999999999999999999876321 11 2466778889999999999999999999863 2222 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 006281 474 NILISKFSEV--------GEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 474 ~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (652)
..+..++... |++++|.+.|+.+.+. .|+. ..+..+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~---~-----------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR---L-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH---H-----------HHHHH
Confidence 5566666654 7889999999999876 3332 23322221110 0000 0 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+...+.+.|++.+|+..++++....+ .+..+..++.++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567788999999999999999876322 345788999999999999999999998887765
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=6.1e-06 Score=87.81 Aligned_cols=235 Identities=11% Similarity=0.105 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDP---DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (652)
+...|-..|......++.++|++++++.+.. +++- -...|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 5567888888888999999999999998764 1111 1246777777777778888899999999875 34456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhc
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCRR 553 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 553 (652)
.|...|.+.+.+++|.++|+.|.+. +......|..++..+.+..+-+.|.++++++++.-+. -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999975 3457788999999999999999999999998876543 1344566777788899
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCCchHHHH
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 630 (652)
|+.+.+..+|+.... .|...+.|..++..-.++|+.+.+..+|+++..++... -...|.-.+..-...|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999998876 77888999999999999999999999999998876443 344455555555567776666555
Q ss_pred HHHHHH
Q 006281 631 LHALQE 636 (652)
Q Consensus 631 ~~~~~~ 636 (652)
=.++.+
T Consensus 1694 KarA~E 1699 (1710)
T KOG1070|consen 1694 KARAKE 1699 (1710)
T ss_pred HHHHHH
Confidence 444443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=7.1e-07 Score=88.55 Aligned_cols=219 Identities=17% Similarity=0.115 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (652)
Q Consensus 363 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 442 (652)
|-...=..+...+.+.|-...|..+|+++. .|..++.+|+..|+..+|..+..+..++ +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333333445556666777777777776543 4566677777777777777776666653 56666666666
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+... ....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 6555555556666655543321 111111222235666666666665554321 13445555555555666666
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.|.+.|...+...+. +...|+++..+|.+.|+..+|...+.++.+ +..+...|........+-|.+++|++.+.++..
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 666666666655554 555666666666666666666666666655 333444455555555566666666666666544
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=1.7e-06 Score=90.41 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREA-YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++...+.+=.+...-|..++| .+++.+..+ ++..........+++--.....+ .+..+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 444444444555666666665 344444431 22222222222333222222222 3466788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
....+.|.+++|..+++...+. .|+ ......++..+.+.+++++|+..+++.+..++. +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 9999999999999999999975 454 556777888899999999999999999988887 788888899999999999
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++|..+|+++.. .|..+..+..++.++...|+.++|...|+++.+....-.....+ ++ +++..-..++++++
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR-RL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH-HH------HHHHHHHHHHHHcC
Confidence 999999999986 55667889999999999999999999999988765433222222 22 23344455566554
Q ss_pred Hc
Q 006281 636 EK 637 (652)
Q Consensus 636 ~~ 637 (652)
-.
T Consensus 244 ~~ 245 (694)
T PRK15179 244 VE 245 (694)
T ss_pred cc
Confidence 43
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3e-06 Score=74.05 Aligned_cols=160 Identities=13% Similarity=0.008 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 518 (652)
..+-..+...|+-+....+........ +.+......++....+.|++..|+..+++.... -.+|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 445556666677777766666654332 445555566777777777777887777777764 344777777777777777
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CchhHHHHHHHHhccccHHHHHHHHH
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG-HSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
|++++|..-|.+.++..+. ++..++.+...+.-.|+++.|..++......+. +......++.+....|+++.|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888777777777776665 666777777777777777777777777766544 44555567777777777777777665
Q ss_pred HHHh
Q 006281 598 WIQE 601 (652)
Q Consensus 598 ~~~~ 601 (652)
+-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.3e-05 Score=70.19 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
|... ..+-..+...|+-+....+..+......+ |.......+....+.|++..|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 55667777788888888888776544322 55666678888999999999999999998876 889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......... +..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 999999999999999999876333 5566777877888899999999999987776655 78888889999999999999
Q ss_pred HHHHHHHhhh
Q 006281 559 ATKLLRGLSS 568 (652)
Q Consensus 559 A~~~~~~~~~ 568 (652)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988765443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.8e-06 Score=71.82 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
..++++..+. .|+ .+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++++..
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555543 344 3555677778888999999988888876433 6777888888888889999999999988888
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
++. +...+..+..++...|++++|+..++.... .|.++..+...+.++.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 775 777888888888889999999999888877 6666666655555443
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=6.9e-06 Score=87.42 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSG---NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+...|...|.-....++.+.|+++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. .. .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHHHH
Confidence 4567888888889999999999999999865 2211 2356778888777778888899999999875 22 345688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC--CchhHHHHHHHHhcc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LG--HSDSHVILLKSLADA 586 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~l~~~~~~~ 586 (652)
.|...|.+.+.+++|.++++.|++.-- -...+|..++..+.+..+-++|..++.++... |. ......-.+..-++.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 899999999999999999999988654 37789999999999999999999999998773 33 333444667777899
Q ss_pred ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
|+.+.+..+|+..+...|.- ..+|+.+++.-.++|+.+.++.+|++....++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999876 5788989999999999999999999999886643
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.1e-08 Score=56.79 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=28.3
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (652)
Q Consensus 255 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 288 (652)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2.1e-05 Score=83.18 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=32.8
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+..+...|...+++++++.+++.+++.+|.+...... ++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~-l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREE-LIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHH-HHHHHH
Confidence 34455566777788999999999999998887655554 777765
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=4.7e-05 Score=66.12 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHhC---C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChh
Q 006281 379 NKSDELVEVYKVLSAN---D-YFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLR 452 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~ 452 (652)
.+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++++...- |.. ..-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4455555555555432 2 122221 23334444455555666666666555442 221 11111111223445566
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
+|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666665554 444445544444444455555555555555553 33455666666666666666666666666655
Q ss_pred hCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 006281 533 NHDVMLARSILSTFMISLCRRG---HFLVATKLLRGLSS 568 (652)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 568 (652)
-..|. ++..+..+...+.-.| ++.-|.+++.+...
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 4445555555443333 23445555555544
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=7.4e-08 Score=56.42 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
.||..+|+.||.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=2.1e-05 Score=82.36 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 445 (652)
....+=.+....|..++|-+ ++.+.. .++.....-....+++.-.....+. ...++..+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHH
Confidence 33333344555666665533 333322 2333333333333444333333333 234688888899999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (652)
.+.|..++|..+++...+.. +.+......+..++.+.+++++|+..+++..+.... +......+..++.+.|++++|.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999874 555677888999999999999999999999987544 5667777888899999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+|++++..++. +...+..+..++...|+.++|...|++..+
T Consensus 175 ~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 175 ACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999986654 678899999999999999999999999877
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=1.7e-06 Score=71.71 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.+++....... +......+...+...|++++|.+.|+.+...++. +...+..+..++...|++++|..++++... .|
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555543222 3344556666777788888888888887776654 667777788888888888888888887755 56
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++..+..++.++...|++++|+..++++.+.+|+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 6667777788888888888888888888888877663
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=3.9e-05 Score=73.29 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=131.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
|+...+...+.+......-..+-.++-+..+.+ -...-|.. ...+...|++++|+..++.+.+.- +.|+..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHH-HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456666666665554443333333333333211 11222333 334556788999999999988763 56666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
..+.+.++.++|.+.++++... .|+ ......+.++|.+.|++.+|+.+++.....++. ++..|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8889999999999999999865 555 556667788899999999999999988877776 888999999999999988
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 557 LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+|.. ..+..+...|++++|+..+..+.+...
T Consensus 425 ~~a~~----------------A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 425 AEALL----------------ARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHH----------------HHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 77754 344566777999999999988888753
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=3.1e-06 Score=70.17 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
....++..+...|++++|.+.++.+.. +|.++..+..++..+...|++++|...++++.+.+|......+. ++.++..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHH
Confidence 334444444455555555555554443 34444444455555555555555555555555444444333332 4444555
Q ss_pred CCCCchHHHHHHHHHH
Q 006281 621 SSYPEPILLLLHALQE 636 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~ 636 (652)
.|++++|.+.+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544443
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=1.2e-05 Score=67.24 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFL 557 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 557 (652)
.++...+...++.+...... + ......+...+...|++++|...|+.++.....+. ......+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555543211 1 12222233445555666666666665555442222 112333455555555566
Q ss_pred HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 558 VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+|+..++.....+..+..+...+.++...|++++|+..|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555555443333344444555555555555555555554
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00022 Score=62.58 Aligned_cols=254 Identities=10% Similarity=0.064 Sum_probs=149.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
-..|..|.+..++..-....... -+...-.-+-++|...|++..... .+.... .|.......+.......++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455566666655444433221 233344445566667776554332 222222 334444444444444445444
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 418 EAY-GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 418 ~a~-~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
.-+ ++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 334444444333333333334455778888888888777622 2333333345566777888888888888
Q ss_pred HHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC
Q 006281 497 LEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG 571 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 571 (652)
.+.. +..|.+.|..++.+ .+.+.+|.-+|+++.++- .|++.+.+..+.++...|++++|..+++.+.. ++.
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 8642 55666666666543 456888888888876543 35777888888888888888888888888776 556
Q ss_pred CchhHHHHHHHHhcccc-HHHHHHHHHHHHhcCCCCc
Q 006281 572 HSDSHVILLKSLADARE-VEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 572 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~ 607 (652)
++++...++..-...|. .+-..+.+.++....|+.+
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666555554444554 3445667777777777764
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=9.9e-05 Score=70.59 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=53.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
..|++++|+..++.++.. .| |+..+....+.+.+.++..+|.+.+++++...+. .....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 445555555555555433 22 2333333344455555555555555555554433 2334444555555555555555
Q ss_pred HHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 561 KLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 561 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
++++.... +|.++..|..|+.+|...|+..+|...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 55554433 444555555555555555555555433
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00064 Score=59.78 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++..+.. ++.++..++-+-...|.
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 44444455554432 3444444444444444455555555555555444443 44444444444444444
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00039 Score=73.89 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 006281 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 306 (652)
.++..+..+|-+.|+.++|..+++++.+.. .-|+...|.+...|... ++++|+.++.+... .+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---------------~~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---------------RF 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------------HH
Confidence 344445555556666666666666665544 22455555555555555 56666555544332 24
Q ss_pred HccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006281 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELV 385 (652)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 385 (652)
+..+++..+.+++..+....+. +.+.-..+.+.+... |..--..++-.+-..|-..++++++.
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 4444555555555555544322 111111122222211 11222334445555666777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006281 386 EVYKVLSANDYFTDMESYNVMVSFLC 411 (652)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (652)
.+++.+.+.... |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 777777776544 5556666666665
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.34 E-value=8.7e-06 Score=66.25 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|++++|.++|+-....++. +...|..|.-++...|++.+|+..+..+.. ++.++.++..++.++...|+.+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 3344455555555555544444443 444444455555555555555555554444 44444455555555555555555
Q ss_pred HHHHHHHHHhc
Q 006281 592 AIEHIKWIQES 602 (652)
Q Consensus 592 A~~~~~~~~~~ 602 (652)
|.+.++.+...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0017 Score=56.84 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=121.3
Q ss_pred HhcCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 341 VSSIDPRSAIVFFNFMIE---KG-RVPTLST-LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (652)
+...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+...-+. +..+-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 334467777777777753 23 4455444 445555666778888888888877665311 22222222223345677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
+++|+++++.+.+... .|.+++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8888888888777652 25666666666666667777777776666655 467788888888888888888888888888
Q ss_pred HHHCCCCC-CHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCC
Q 006281 496 MLEKGVAP-DATTYTSLLEGLCQET---NLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 496 m~~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~ 537 (652)
+.-. .| ++..+..+.+.+.-.| +.+.+.++|.+.++..+.
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 7754 33 3444455555544333 566677777777766553
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=3.6e-05 Score=64.36 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=95.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch----hHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~ 580 (652)
.|..++..+ ..++...+...++.+....+.-. ....-.+...+...|++++|...|+.+....+++. ....++
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 47889999999999888765521 23344566778899999999999999988544432 445789
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
.++...|++++|+..++...... ..+......+++|.+.|++++|.+.|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999999999999997744322 33456667999999999999999999864
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=2.6e-05 Score=75.35 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
....|+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|++++++.+.... -+...+..-.+.|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34556667777788999999999988763 54 344577778778888888888888886532 25666666667788
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (652)
+.++++.|+++.+++....+. +..+|..|+.+|.+.|++++|+..++.++..+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888899999999988887776 77788889999999999999998888887643
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=1.6e-05 Score=71.04 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
+.+.+++.+|+..|.+.++...+ |.+-|..-..+|++.|.++.|++-.+.++..++. ....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 34445555555555555544222 4444444555555555555555555555555443 344555555555555555555
Q ss_pred HHHHHHhhh
Q 006281 560 TKLLRGLSS 568 (652)
Q Consensus 560 ~~~~~~~~~ 568 (652)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555555554
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=3.7e-06 Score=62.60 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (652)
.|+++.|+.+++++++..+. ++...+..++.++.+.|++++|.+++++...++.+......++.++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35556666666665555442 23334444556666666666666666552223333344445555666666666666655
Q ss_pred HH
Q 006281 597 KW 598 (652)
Q Consensus 597 ~~ 598 (652)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 145
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.17 E-value=0.00034 Score=57.75 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHHH
Q 006281 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHVI 578 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 578 (652)
.|+...-..|..++...|+..+|...|++.+.--+.-|...+-.+.++....+++.+|...++++-+. ...++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44555555566666666666666666666555444445666666666666666666666666665542 224455556
Q ss_pred HHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 579 LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
+++.+...|++..|...++.+....|+....++ +...+.++|+..++..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence 666666666666666666666666666654444 445566666665555444433
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=0.00014 Score=70.42 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
....++..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++++..+.. +.+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456666677888999999999998873 553 3457777777888888999988888653 456666666677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
+.++++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 899999999999999865 454 458999999999999999999888865443
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=6e-05 Score=60.79 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=61.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~ 580 (652)
++..+...+.+.|++++|.+.|++++...+. .....+..++.++.+.|++++|.+.++.+.. .|.. +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666677777777777766654432 1133455566667777777777777776654 2222 34555666
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++.+.|+.++|...++++.+..|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 66677777777777777777766665
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=8.9e-05 Score=59.78 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELF 615 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 615 (652)
++..++..+.+.|++++|.+.++.+.. .|.+ +..+..++.++.+.|+++.|+..++++....|+.+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666666666666666666654 2222 23455566666666666666666666666555532 22333366
Q ss_pred HHhhcCCCCchHHHHHHHHHHc
Q 006281 616 ASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=9.6e-05 Score=72.00 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=76.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHH
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
...+...|++++|++.|+++++.++. +...|..+..+|.+.|++++|+..++++.. +|..+..+..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 44556778888888888888887776 677777888888888888888888888876 6667777888888888888888
Q ss_pred HHHHHHHHHHhcCCCCcH
Q 006281 591 MAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~ 608 (652)
+|+..++++.+.+|....
T Consensus 88 eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 888888888888887743
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00012 Score=66.11 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-C--CHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-G--HFLVATKL 562 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~ 562 (652)
.+....-++.-+..+.. |...|..|...|...|+.+.|...|.++.+..++ ++..+..+..++... | ...++.++
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444444444444333 6667777777777777777777777777666654 666666666664432 2 24466777
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++++.. ++.+..+...|+..+...|++.+|...++.|++..|...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777666 666666777777777777777777777777777666553
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=7.6e-05 Score=57.30 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.+..++...|++++|.+.++.... .+.....+..++..+...|++++|...+.++.
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333334444444444433332 22222233333344444444444444444333
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1.2e-05 Score=48.05 Aligned_cols=33 Identities=52% Similarity=0.940 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777676665
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00017 Score=58.90 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
....+...+...|++++|.++|+.+.. +|.+...|..|+.++...|++++|+..|..+...+|+++...++ ++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~-ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA-AAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH-HHHHHHH
Confidence 444566667777888888888877766 67777777788888888888888888888888888777666666 7777888
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|+.+.|++.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888877766655
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=47.81 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccC
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 188 (652)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=7.2e-05 Score=57.42 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
++..++..+...|++++|...++++.. .+.....+..++.++...|++++|++.++++....|... ..+..++..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHH
Confidence 355677788889999999999999876 455556778899999999999999999999999988875 344458889999
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887654
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=47.27 Aligned_cols=32 Identities=44% Similarity=0.788 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=47.17 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCcc
Q 006281 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187 (652)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 187 (652)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456677777777777777777777777666655
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=9.9e-06 Score=60.28 Aligned_cols=80 Identities=20% Similarity=0.091 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHhhh-CCC--CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 553 RGHFLVATKLLRGLSS-DLG--HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
.|+++.|+.+++++.+ .|. +...+..++.++.+.|++++|++++++ .+.++.+....+- ++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l-~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYL-LARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHH-HHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHH-HHHHHHHhCCHHHHHH
Confidence 5889999999999987 342 334566789999999999999999999 6666655455554 7899999999999999
Q ss_pred HHHHH
Q 006281 630 LLHAL 634 (652)
Q Consensus 630 ~~~~~ 634 (652)
.+++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0017 Score=60.91 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=120.8
Q ss_pred CCHHHHHHHH-HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006281 433 PDVSFYNSLM-EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511 (652)
Q Consensus 433 p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 511 (652)
|...+|..+- .++...|+.++|.++--...+.. ..+....-.--.++--.++.+.|...|++.+.. .|+...-..+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3344444332 34567788999988887777653 233322222223444578889999999988854 4554432222
Q ss_pred -------------HHHHHcCCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch
Q 006281 512 -------------LEGLCQETNLQAAFEVFNKSVNHD---VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD 574 (652)
Q Consensus 512 -------------~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 574 (652)
.+-..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+.++|+.-.+.... ++....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 233467899999999999998876 455667788888889999999999999988877 554555
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.+..-+.++...++|++|.+-++++.+...+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6667778888899999999999999887654
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.94 E-value=3e-05 Score=54.32 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+..+.+.|++++|++.++++.. .|.++..+..++.++...|++++|+..++++.+.+|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3445555555555555555544 34444455555555555555555555555555555543
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00028 Score=61.02 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++++...+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34456666666677777777777777765433222 245666666677777777777777776665544 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++...|+...+..-++... ..+++|++.++++...+|.+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh
Confidence 66666666555443332221 22577888888888888876
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=5.6e-05 Score=53.74 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc-cHHHHHHHHHHHHhcC
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR-EVEMAIEHIKWIQESS 603 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 603 (652)
+|..++..+...|++++|+..|++..+ +|.++..+..++.++...| ++++|++.++++.+.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 344444444444444444444444433 3334444444444444444 3444444444444443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00044 Score=59.64 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
.|..+...+...|++++|...|++++.....+ ...++..+..++...|++++|++.++++.. .+.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555566666666666555443221 123455555666666666666666665544 333344444444444
Q ss_pred h-------ccccHH-------HHHHHHHHHHhcCCCCc
Q 006281 584 A-------DAREVE-------MAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 607 (652)
. ..|+++ +|+.+++++...+|...
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 4 455544 56666667777777653
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00048 Score=67.10 Aligned_cols=126 Identities=11% Similarity=0.069 Sum_probs=99.3
Q ss_pred CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH
Q 006281 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (652)
Q Consensus 184 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 263 (652)
+...+......+++.+....+++.+..++-+.........-...+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777788888888888888888888876333322234445889999999999999999988888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 309 (652)
+|.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888887777777777777766654
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.0004 Score=67.63 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhc-CChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 006281 330 DDDVLNALIGSVSS-IDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (652)
Q Consensus 330 ~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (652)
+......++..+.. .+.+.+..++....... ...-..|..++++.|.+.|..+.++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33334444444333 24444555555444331 1112233345555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 447 (652)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555544444444444444444433
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00021 Score=69.69 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
.-+..+...|++++|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-YLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHhCC
Confidence 345667889999999999999987 77788899999999999999999999999999999988555 4459999999999
Q ss_pred CchHHHHHHHHHHc
Q 006281 624 PEPILLLLHALQEK 637 (652)
Q Consensus 624 ~~~a~~~~~~~~~~ 637 (652)
+++|+..+++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987765
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00033 Score=62.89 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 523 (652)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4678899999999999999985 678888999999999999999999999998865322 35689999999999999999
Q ss_pred HHHHHHHhhhCCCCccHHHHH
Q 006281 524 AFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~ 544 (652)
|++.|++.++.++ +..+|.
T Consensus 168 A~~aykKaLeldP--~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALELDP--DNESYK 186 (304)
T ss_pred HHHHHHhhhccCC--CcHHHH
Confidence 9999998887665 444444
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0017 Score=66.23 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcC--------CCHHHHHHHHHHhh
Q 006281 467 SGNLKTYNILISKFSE--V---GEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQE--------TNLQAAFEVFNKSV 532 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 532 (652)
+.+...|...+.+... . +....|..+|++.++. .|+ ...|..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4555556555555332 1 2245666666666654 233 23333332222111 12344455555444
Q ss_pred hCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 533 NHD-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 533 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
... ...++..+..+.......|++++|...++++..-.++...|..++..+...|+.++|++.++++...+|..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 432 2235567777777777789999999999999884446778889999999999999999999999999998753
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.001 Score=62.53 Aligned_cols=129 Identities=14% Similarity=0.206 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 515 (652)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555556666666666666665432 2223333333333 22234455566666666653 333555566666666
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+.|+.+.|..+|++++.. +..+ ..+|..++..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544 2112 23566666666666666666666666555
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0075 Score=50.09 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILST 545 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 545 (652)
.|+...--.|..+....|+..+|...|++...--+.-|......+.++....+++..|...+++..+.++. -++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666666666677777777777766665334445556666666666667777777777666554421 01223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+.+.|...|++.+|+..|+.+....+.+......+..+.+.|+.++|..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56666666777777777766666545555555555555666665555444433
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00049 Score=51.90 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRKGL-DPDVSFYNSLMEACCR 447 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~ 447 (652)
.|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34444444556666666666666555 5566666655555543
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0015 Score=59.14 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---CCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE---TNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
+-|...|-.|...|...|+.+.|...|.+..+.. .++...+..+..++... ....++..+|++++..++. +....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 5556666666666666666666666666666532 12444445555444322 2345566666666666655 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..|...+...|++.+|...++.|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666666666666655
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00066 Score=51.23 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSG--------RLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
-|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555556666555555 555556665555554432 122344555555555555555555555
Q ss_pred HHHHH
Q 006281 442 MEACC 446 (652)
Q Consensus 442 l~~~~ 446 (652)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.69 E-value=0.048 Score=51.14 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=155.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.-.|+++.|.+-|+.|... |... ....|.-.--+.|..+.|..+-+..-..-.. -...+...+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3458888888888888763 2211 2333444445678888888877776655322 34567778888888888888
Q ss_pred HHHHHHHHHHc-CCCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHcCCCHHHHHH
Q 006281 454 AKKLWDQMFAS-GCSGNLK--TYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDATT-YTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 454 a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~ 526 (652)
|+++++.-... -+.++.. .-..|+.+-+. .-+...|...-.+.. .+.||... -..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhh
Confidence 88888876654 2334432 12223322111 123455555544444 34555432 2334567889999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCH--HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHF--LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
+++.+-+..+.|+. .. +....+.|+. +...+ .+++.+ .+.+.++...++.+....|++..|..--+.+....
T Consensus 285 ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkR-a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 285 ILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKR-AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHH-HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99988887766653 32 2234556653 22222 222222 55677788888888899999999998888888888
Q ss_pred CCCcHHHHHHHHHHhhc-CCCCchHHHHHHHHHHc
Q 006281 604 PTMLQEISAELFASLSS-SSYPEPILLLLHALQEK 637 (652)
Q Consensus 604 ~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 637 (652)
|....... +.++-.. .||-.++...+-+..+.
T Consensus 360 pres~~lL--lAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLL--LADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHH--HHHHHhhccCchHHHHHHHHHHhcC
Confidence 76543333 6666554 48988988888766554
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00016 Score=50.63 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=51.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++..+.+.|++++|++.++++.+..|......+. ++.++...|++++|...++++.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL-LGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH-HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999997555554 999999999999999999998765
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.00061 Score=63.58 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=85.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh----CCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVN----HDV-MLARSILSTFMISLCRRGHFLVATKLLRGLSS-------DLGHSD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~ 574 (652)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+..++.-.|+++.|.+.++.... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667888888877664322 121 11234577788888888888888888775421 222345
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP-----TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+..+|++.|.-..++++|+.+..+-+.... .-....+.+|+.+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667888888888888888887766433211 112344555888888888888888887765544
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.4e-05 Score=42.97 Aligned_cols=29 Identities=48% Similarity=0.843 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555554443
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.0038 Score=58.98 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=47.1
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHhhhC----C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----c---hh
Q 006281 510 SLLEGLCQE-TNLQAAFEVFNKSVNH----D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH-----S---DS 575 (652)
Q Consensus 510 ~l~~~~~~~-g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~---~~ 575 (652)
.+...|... |++++|++.|+++.+. + ..--..++..++..+.+.|++++|.++++++...... . ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 334445555 6666666666665442 1 1111234555666666677777777777665442111 0 11
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+...+-++...|+...|.+.+++....+|
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22333344556666677777766666655
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00016 Score=51.37 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-CCchHHHHHHHHHHc
Q 006281 572 HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS-YPEPILLLLHALQEK 637 (652)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 637 (652)
++..|..++..+...|++++|+..++++.+.+|+.....++ ++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~-~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYN-LGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHH-HHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678899999999999999999999999999998655555 999999999 799999999987764
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0012 Score=60.76 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=73.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCchhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD----LGHSDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~ 580 (652)
.|...+..+.+.|++++|...|+..++..+.-. +..+..++.+|...|++++|...|+.+... +..+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566888888888888877665422 456677888888888888888888887652 23455666778
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++...|+.++|...|+++.+..|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 888888888888888888888888764
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0028 Score=54.80 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
...+..+...+...|++++|...|++..+.+..+ ....+..+..++.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 3457777778888999999999999998753222 2467888889999999999999999999875322 456666777
Q ss_pred HHHHcCCCHHHHHHHHH
Q 006281 513 EGLCQETNLQAAFEVFN 529 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~ 529 (652)
..+...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 77877777655444333
No 182
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0034 Score=58.94 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=156.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLR 452 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 452 (652)
.+.+..++..|+..+....+..+. +..-|..-...+...|++++|.--.+.-.+. +|. ...+...-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 355566666677777766666544 4445555555566666666666555443332 111 111111222222222222
Q ss_pred hHHH---------------HHHHHHHcC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH--
Q 006281 453 PAKK---------------LWDQMFASG-CSGNLKTYNILI-SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE-- 513 (652)
Q Consensus 453 ~a~~---------------~~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-- 513 (652)
+|.+ .++...... -+|...+|..+- .++.-.|++++|...--..++... ...+..+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 2222 222222221 124445555443 456678999999888777665422 223333444
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch----hHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARS-----------ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD----SHV 577 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~ 577 (652)
++...++.+.|...|++.+..++..... .+..-..-..+.|++.+|.+.+.+... +|.+.. .|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 3446788999999999988877532211 122224446788999999999999877 555443 344
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
..+.+..+.|+.++|+.--+.+.+.++.-..... .-+.++...++|++|.+-+++..+...
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall-~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALL-RRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5666778899999999999999999886643333 366667788999999999998877643
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0016 Score=53.62 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------hhH---HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 485 EIEGALRLFHNMLEKGVAPDA------TTY---TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~------~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
+.++-.+.+.+....|-.+-. .+. -...--+...|++++|..+|.-+...++. +...+..|..++...++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHH
Confidence 344445555555555654421 111 12233345788888888888877777765 67777788888888888
Q ss_pred HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 556 FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 556 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+++|+..+..... +..++.+....+.++...|+.+.|+..+..+.+.
T Consensus 87 y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 8888888877655 4566777778888888888888888888888773
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.7e-05 Score=42.47 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 184 (652)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.59 E-value=0.0002 Score=50.72 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 552 RRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.|++++|+++++++.. +|.+...+..++.+|.+.|++++|.++++++...+|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44556666666665544 45555555566666666666666666666666655553
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0019 Score=60.60 Aligned_cols=134 Identities=12% Similarity=0.067 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+..++.-.. +...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 4688888988898899999999999985432 234445544444 33357777899999998887554 88899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCc----hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHS----DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.+.|+.+.|..+|++.....+.. ..|..++.--.+.|+.+.+.++.+++.+.-|..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998753333 367788888889999999999999999887764
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0028 Score=64.64 Aligned_cols=135 Identities=8% Similarity=-0.074 Sum_probs=100.9
Q ss_pred CCCCCHhhHHHHHHHHHc--C---CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHHh
Q 006281 500 GVAPDATTYTSLLEGLCQ--E---TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR--------GHFLVATKLLRGL 566 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 566 (652)
+...+...|..++++... . ++.+.|..+|+++++.++. ....+..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456688889988887543 2 2377999999999999877 556666655554332 1234455555554
Q ss_pred hh---CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 567 SS---DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 567 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.. ++..+..+..++-.....|++++|...++++.+.+|+ ...|..++..+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33 4555667888888888889999999999999999985 456666999999999999999999987654
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.01 Score=56.13 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=44.3
Q ss_pred HHHHcc-CCHHHHHHHHHHHhh----CCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-hHH
Q 006281 234 HGFCKG-KRVEEAFKVLDELRI----RECKPD--FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-----TN-DYR 300 (652)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~-~~~ 300 (652)
..|-.. |++++|.+.|++..+ .+ .+. ...+..+...+.+.|++++|.++|++........+ .. .|.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 345555 677777776665533 12 111 22345556667777777777777777655432211 11 112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHcC
Q 006281 301 EFILGLIVERRICEAKELGEVIVSG 325 (652)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (652)
..+-++...||...|...++.....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2222444456666666666665543
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00027 Score=50.02 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...|++++|+++|++++...+. +..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567778888888877777766 6667777788888888888888888877764
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.14 Score=51.87 Aligned_cols=174 Identities=14% Similarity=-0.029 Sum_probs=94.3
Q ss_pred ccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCc
Q 006281 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDI--------GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186 (652)
Q Consensus 116 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 186 (652)
.|-+..|..|.......-.++.|+..|-+.... |++. +...-.+=+. +-.|++++|+++|-+|..+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477888888887777666777777766554332 2211 0001111112 224788889888888776653
Q ss_pred cCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH
Q 006281 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (652)
Q Consensus 187 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 263 (652)
.+..+.+.||+-.+.++++.- |...+| ..+++.+.+.+.....+++|.+.+..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~-- 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T-- 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence 455666778877777666542 222222 34566677777777777777777665322 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 318 (652)
...+.++.+..++++-+.+.+.+. -+......+...+.+.|.-++|.+.
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHH
Confidence 123445555555554444433321 2223333444444555554444443
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.027 Score=51.53 Aligned_cols=58 Identities=2% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.++.-|.+.|.+..|+.-++.+.+.-|+.+ ......++.+|...|..++|.+..+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 566667777888888888888877766553 2223336677777888888777666543
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0035 Score=53.97 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++++...+. ....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4455666666667777777777777776543222 1235666777777777777777777777665543 334455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 006281 548 ISLC-------RRGHFLVATKLLRG 565 (652)
Q Consensus 548 ~~~~-------~~g~~~~A~~~~~~ 565 (652)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66776655554443
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.45 E-value=0.016 Score=47.87 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
+...|++++|..+|+-+.-.++. +..-|..|..++-..+++++|+..|..+...+.. |+..+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34567777777777766654433 3444555555666666777777777665554432 444455566666777777777
Q ss_pred HHHHHHhhhC
Q 006281 560 TKLLRGLSSD 569 (652)
Q Consensus 560 ~~~~~~~~~~ 569 (652)
+..|+.....
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7776666654
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.094 Score=47.99 Aligned_cols=177 Identities=7% Similarity=-0.038 Sum_probs=94.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY---RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (652)
.....+...|+++.|.+.|+.+.... +-+.... -.+..++.+.++++.|...+++..+..+......|-..+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445556788888888888887754 2222222 3455667788888888888888776533322223333333322
Q ss_pred h--c---------------CC---hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc
Q 006281 166 S--D---------------GY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225 (652)
Q Consensus 166 ~--~---------------~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 225 (652)
. . .+ ...|+..|+++.+. -|++ .-..+|...+..+... -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~------l 174 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR------L 174 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH------H
Confidence 1 1 01 12344444444443 2222 1122333322222221 0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
...-..+...|.+.|.+..|..-|+.+.+. +.+........+..+|...|..++|..+...+
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011113556677778888787777777764 22333445566777777777777777665544
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0022 Score=59.03 Aligned_cols=96 Identities=5% Similarity=-0.057 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc---HHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLKSLADAREVEMAIEHIKWIQESSPTML---QEISAE 613 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 613 (652)
..|......+.+.|++++|+..|+.+.. .|.+ +.++..++.+|...|++++|+..++.+.+..|+.+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k- 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK- 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH-
Confidence 3455555555677999999999999887 4443 36888999999999999999999999998877652 33333
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHc
Q 006281 614 LFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 614 l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.++...|++++|.++++++.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888999999999999988765
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.0068 Score=47.86 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC---CchhHHHHHHHHhcccc
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD-LG---HSDSHVILLKSLADARE 588 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~ 588 (652)
+-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.... |. .......++.++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3344444444444444444443321 122333444444445555555444444332 21 11222233334444455
Q ss_pred HHHHHHHHHH
Q 006281 589 VEMAIEHIKW 598 (652)
Q Consensus 589 ~~~A~~~~~~ 598 (652)
.++|++.+-.
T Consensus 91 ~~eAl~~~l~ 100 (120)
T PF12688_consen 91 PKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.37 E-value=0.00096 Score=47.95 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|.+.+++++|.++++.+.. +|.++..+...+.++.+.|++++|.+.++++.+..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 467777888888888888776 666777777888888888888888888888888877663
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.031 Score=50.69 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (652)
......|++.+|..+|....+.... +...-..++.+|...|+.+.|..++..+..............-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999988876433 455667788899999999999999987554433322223344566777778888
Q ss_pred HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 558 VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+...+-.+...+|.+...-..++..+...|+.+.|.+++-.+..++-.. ....-..+++.+...|..+.+...++
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888899999999999999999999999999988774332 23344458888888776555544443
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0037 Score=53.78 Aligned_cols=107 Identities=12% Similarity=0.186 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 006281 79 NFTHSPLSYHSILKSLS-----LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153 (652)
Q Consensus 79 ~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 153 (652)
+-..+..+|..+++.+. ++|..+-....+..|.+.|+..|..+|+.|++.+=+. .+- -..+|+.+
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv-p~n~fQ~~-------- 111 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV-PRNFFQAE-------- 111 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc-cccHHHHH--------
Confidence 33457888888888886 4577888888999999999999999999999987652 221 11122221
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 204 (652)
..-| -.+-+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 112 -------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12456688888888888888888888888888877654
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.005 Score=52.99 Aligned_cols=103 Identities=20% Similarity=0.407 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006281 399 DMESYNVMVSFLCT-----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 473 (652)
+..+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 55666666666654 36677777777888888888788888888877654 2221 1111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
-| -.+.+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 114 -----hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -----HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 12345577777777777777777777777777765543
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.3 Score=49.68 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCc--------cCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KIT--------LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 152 (652)
|-+..|..+.......-.++.|+..|-+.... |+. .+.....+=|.+ --|++++|.++|-.+.++.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 55677877777666777777777776655432 111 111122222222 2488999999988886542
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
.-+..+.+.|++-.+.+++..=-.. +-+.-...|+.+-..++....+++|.+.+...... ..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~ 827 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------EN 827 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------Hh
Confidence 2355666777776666665431100 00111245666666677777777777777654432 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 006281 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (652)
Q Consensus 232 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 311 (652)
.+.++.+..++++-+.+-..+.+ |......+...+.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 45566666666665555555443 5666777888888888888887766332 11 1 245667777788
Q ss_pred HHHHHHHHHH
Q 006281 312 ICEAKELGEV 321 (652)
Q Consensus 312 ~~~a~~~~~~ 321 (652)
+.+|.++.+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 8888776544
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.077 Score=47.23 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHhhcCCCCchH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQE--ISAELFASLSSSSYPEPI 627 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a 627 (652)
.++.-|.+.|.+..|+.-++.+.+.-|+.... ....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 56666777777777777777777776665322 223366666666666533
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.0053 Score=48.50 Aligned_cols=93 Identities=16% Similarity=0.035 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFA 616 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 616 (652)
...+..++-..|+.++|+.++++....... ...+..++..+...|++++|+.++++.....|+. ...+...+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 345677888999999999999999874322 2356789999999999999999999999987762 1233333677
Q ss_pred HhhcCCCCchHHHHHHHHH
Q 006281 617 SLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 617 ~~~~~g~~~~a~~~~~~~~ 635 (652)
++...|+.++|.+.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 8889999999998886544
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.24 Score=47.76 Aligned_cols=193 Identities=10% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCCC
Q 006281 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN-------ILISKFS----EVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 436 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
.+|..++....+.++...|.+.+.-+... .|+...-. .+-+..+ ..-+..+-+.+|++....++. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-r 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-R 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-H
Confidence 45667777777777777777777766653 33332111 1112222 112233445566666554332 1
Q ss_pred HhhHHHHHH---HHHcCCC-HHHHHHHHHHhhhCCC---CccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhC---CC
Q 006281 505 ATTYTSLLE---GLCQETN-LQAAFEVFNKSVNHDV---MLARSILSTFMISLCRRG---HFLVATKLLRGLSSD---LG 571 (652)
Q Consensus 505 ~~~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~ 571 (652)
......|+. -+.+.|. -++|+.+++.++.-.. ..-..++..+=.+|.+.= .+.+-.++-+-+.+. +.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 222223332 3455555 7778888877655322 111222222222333221 122222222212111 11
Q ss_pred ---CchhHHHHHHH--HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 572 ---HSDSHVILLKS--LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 572 ---~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
+.+.-+.|+.+ +..+|++.++.-.-..+.+..|+ +..++.++-.+....++++|++++.+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS--~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS--PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 11122233333 35678888888887788888873 46666677777788888888888774
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0076 Score=56.94 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.++..+..++.+.+++.+|++..++... ++.+.-+...-+.++...|+++.|+..|+++.+..|++. .+-+.|..+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHH
Confidence 3577788888999999999999998877 788888888999999999999999999999999999884 44444666655
Q ss_pred cCCCC-chHHHHHHHHHHc
Q 006281 620 SSSYP-EPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g~~-~~a~~~~~~~~~~ 637 (652)
+..++ ++..++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 54444 4447778877765
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.02 Score=53.92 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCccH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNM----LEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----D-VMLAR 540 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 540 (652)
..|..|...|.-.|+++.|+..-+.= .+.|-+. ....+..+.+++.-.|+++.|.+.|+..+.. + -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666777778999988765432 2333221 2346777888888899999999999875432 2 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh-------hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGL-------SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
....+|...|.-...+.+|+.++.+- ....+...++.+|+.++...|+.++|+...+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556888888888899998887642 22344566888999999999999999888777654
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.076 Score=53.17 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006281 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339 (652)
Q Consensus 260 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (652)
-...+.+-+..|...|.+++|..+- ++-.....|.-+.......=+++-|.+.+..+.+.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------- 614 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL-------------- 614 (1081)
T ss_pred ccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------
Confidence 3344455555667777777765431 11112223333333333333444444444333221
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHhcCC
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY----FTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~ 415 (652)
.+-+-+.-++++.++|-.|+...... .++-.|++.+|.++|.+--..+- ..|...| -..+-|...|.
T Consensus 615 -----~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~ 685 (1081)
T KOG1538|consen 615 -----RYLELISELEERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGD 685 (1081)
T ss_pred -----HHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCC
Confidence 22233344666777777777655443 34556777777777765322110 0011111 11233334444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH------HHHHcCC---CCCHHHHHHHHHHHHhcCCH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD------QMFASGC---SGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 486 (652)
.++-..+.++--+.. -+..--.+....+...|+.++|..+.- -+.+-+- ..+..+...+..-+.+...+
T Consensus 686 ~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 433333332211110 000001122333444555555554421 1111111 12223333333344445556
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
.-|.++|..|-+. .++++.....+++++|..+-++.
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 6666666665421 24555666677777777776654
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=96.97 E-value=0.044 Score=53.42 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+..+|.++.+++++.+.. |+.....+..++.-.|+++.|..+|+++.. +|..+..+...++.+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455677777777777765 666777777776777777777777777766 666667777777777777777777777777
Q ss_pred HHhcCCCCcHH-HHHHHHHHhhcCCCCchHHHHH
Q 006281 599 IQESSPTMLQE-ISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 599 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+.+.+|.-... +....++.|+..+ .++|..++
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 77777754322 2233344555444 34444444
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.3 Score=47.03 Aligned_cols=166 Identities=19% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASG---CSGNLKTYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
.++-+|....+++..+++.+.+...- +..+...--...-++.+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444555556666666666555431 11111222233334444 5666666666666444444455555555554
Q ss_pred HHHc---------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHh----hhC---CCCc
Q 006281 514 GLCQ---------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF----LVATKLLRGL----SSD---LGHS 573 (652)
Q Consensus 514 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~----~~~---~~~~ 573 (652)
.|-. ....++|+..|.+.-+.. ++...=-.++..+...|.. .+..++.-++ .+. ....
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566777776654443 2211111122222233321 1222322111 111 1122
Q ss_pred hhHH--HHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 574 DSHV--ILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 574 ~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|. +++.++.-.|++++|.+.++++....|..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2332 788888889999999999999998877664
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.92 E-value=0.26 Score=43.81 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006281 375 LCKRNKSDELVEVYKVLSANDYF--TDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 429 (652)
+...|++++|...|+.+...-+. --....-.++.++.+.|+++.|...++++.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555555555554433111 01123334455555566666666666655544
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.27 Score=43.70 Aligned_cols=150 Identities=10% Similarity=0.103 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
.+...+.|++-.. ...+.++.++...|.+.-...++++.++.....++.....|.+.-.+.||.+.|...|++
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555666654432 345567777778888888999999999876666788888888888899999999999996
Q ss_pred hhhCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 531 SVNHD-----VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 531 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
..+.. ......+.......+.-.+++.+|...+.+++. ++.++...+.-+-++...|+...|++.++++.+..|
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 54432 222333444445556677889999999988887 666666666666777778999999999999999988
Q ss_pred CCc
Q 006281 605 TML 607 (652)
Q Consensus 605 ~~~ 607 (652)
...
T Consensus 318 ~~~ 320 (366)
T KOG2796|consen 318 RHY 320 (366)
T ss_pred ccc
Confidence 763
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.90 E-value=0.45 Score=45.99 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccC------HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--H
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLD------SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL--A 165 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~ 165 (652)
+-+++++.+++.+|.++.+.. .-+ ....+.++++|... +.+.....+....+. .| ...|-.|..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 346788888888888776542 222 22335666676544 344444444444333 11 33454554443 3
Q ss_pred hcCChhhHHHHHHHHHh
Q 006281 166 SDGYIDNALKMFDEMSH 182 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~ 182 (652)
+.+.+.+|.+.+..-.+
T Consensus 91 ~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKE 107 (549)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 55677777777665543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.89 E-value=0.0026 Score=45.61 Aligned_cols=59 Identities=17% Similarity=-0.019 Sum_probs=51.7
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
..+|.+.+++++|++.++.+...+|......+. .+.++...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQ-RARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHH-HHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467889999999999999999999998555554 99999999999999999999887643
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.44 Score=45.45 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
+.+..+.-+...|+...|.++-.+.. + ||...|...+.+++..++|++-..+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455556667788777777765552 2 5778888888888888888776665432 114477888888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
+.|+..+|..++..+ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777662 124456777888888877665443
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.54 Score=47.48 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------- 506 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 506 (652)
+..+...+...+.+...+.-|.++|..|-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3344444445555666666777777766432 23556666777777777776665432 33321
Q ss_pred ----hHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 507 ----TYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 507 ----~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
-|.-.-.+|.++|+..+|.++++++
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1122223455566666666666654
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.33 Score=43.21 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-----
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL----- 512 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~----- 512 (652)
-+.++..+.-.|.+.-...++.+.++..-+.++.....|.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345566666667777777777777776545566677777777777888888888887666433333433333332
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
..|.-++++..|...+.+++..+.. ++...+.-+-++.-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667888888888888877765 5555555555555568888888888888773
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.02 Score=51.40 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=75.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCchhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS----DLGHSDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~ 580 (652)
.|+.-+.. .+.|++..|.+.|...++..+. ..+..+..|..++...|++++|..+|..+.+ .+..++...-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 4567788888888887776543 1244566688888888888888888877755 344556778888
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
.+..+.|+.++|-..|+++.+..|+.....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888888888888888888888888875443
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.84 Score=47.16 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.-..-+.+-.+.-+...|+...|.++-.+..- ||-..|..-+.+++..+++++-.++-+.+. ++.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 33444555556667777888888887766542 578888888888888888877666555443 24567778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
..+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 8888888988888888766431 11 56677888888887776543
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.037 Score=46.28 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 507 (652)
..++..+...|+++.|.++.+.+.... +.+...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455555555555555555553 44555555555555555555555555555432 255555443
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.76 E-value=0.43 Score=43.72 Aligned_cols=226 Identities=17% Similarity=0.060 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhhHHH
Q 006281 379 NKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAKK 456 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 456 (652)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555555544432221 2345555566666666666666666665542 112234445555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 457 LWDQMFASGCSGNLKTYNILIS-KFSEVGEIEGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543122 122222222 55666666666666666644211 01222333333334455666666666666555
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH-SDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.........+..+...+...++++.|...+.......+. ...+..+...+...++.+.+...+.+.....|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 443313445555666666666666666666665552222 233444444444445566666666666666554
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.0048 Score=59.72 Aligned_cols=102 Identities=10% Similarity=-0.035 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch---hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD---SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (652)
+...+..+..+|.+.|++++|+..+++..+ +|.+.. +|..++.+|...|+.++|++.++++.+..+.. +..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~----f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK----FSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh----HHHH
Confidence 567799999999999999999999999877 666664 48899999999999999999999999974222 2111
Q ss_pred HH--HhhcCCCCchHHHHHHHHHHcccccCCC
Q 006281 615 FA--SLSSSSYPEPILLLLHALQEKCLDSEIG 644 (652)
Q Consensus 615 ~~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 644 (652)
.. .+....+.++..++++.+.+-|.+....
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g~~ 181 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDIGSS 181 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCccCCc
Confidence 11 1223345567788888888877655433
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.03 Score=46.89 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.++..+...|++++|+..++++...+|-+ ...+..++.+|...|+..+|.+.++++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555556666666666666666666655 3444446666666666666666665554
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.69 E-value=0.022 Score=45.96 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (652)
..+-.-+....+.|++++|++.|+.+....+ ...+...++.+|.+.|++++|+..+++..+.+|.++.+-|-
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3344455566777888888888888876322 33456678888888888888888888888888877544443
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.25 Score=47.58 Aligned_cols=166 Identities=10% Similarity=-0.054 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKG---VAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARSILST 545 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 545 (652)
+...++-+|....+++..+++.+.+...- +.-....-..+.-++.+ .|+.++|++++..++.....+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455667999999999999999998641 11122223345556677 9999999999999777777778899988
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH----HHHHHHH---HH-HHhc---CC
Q 006281 546 FMISLCR---------RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV----EMAIEHI---KW-IQES---SP 604 (652)
Q Consensus 546 l~~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-~~~~---~~ 604 (652)
++..|.. ...+++|+..+.+.-+ ++..-+.. .++..+.-.|.- .+..++. .. +.++ .+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8887653 2247889999988766 32221211 222222222321 1222222 11 1122 24
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
......+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4445556668888889999999999999988763
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=96.62 E-value=0.034 Score=54.17 Aligned_cols=116 Identities=8% Similarity=-0.063 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHh---------cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc
Q 006281 520 NLQAAFEVFNKSV---NHDVMLARSILSTFMISLCR---------RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA 586 (652)
Q Consensus 520 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 586 (652)
..+.|..+|.+++ ..++. ....|..+..++.. .....+|.++.++..+ ++.++.+...++.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 3566778888877 43333 23445555444332 2335677888888877 788888999999999989
Q ss_pred ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+++.|...++++...+|+.....+ ..+......|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~-~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYY-YRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999999999999854444 4888889999999999999975443
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.68 Score=43.88 Aligned_cols=308 Identities=10% Similarity=0.039 Sum_probs=133.1
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HcCCChhHHH
Q 006281 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLS--LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKAF 139 (652)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~ 139 (652)
|..+.+.|....+..| |..|-..+. -.|+-..|.++-.+..+. +.-|...+..|+.+- .-.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 4555666665554444 444444332 345555555554443321 122333333333322 2346666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHH----HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHH
Q 006281 140 SVFNEVKFNCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215 (652)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 215 (652)
+-|+.|.. ++.+-..=++ .--+.|..+.|.+.-++.-..-.. -...+...+...|..|+++.|+++++.-
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66666653 2333222222 223456666666665555443211 2344455566666666666666666655
Q ss_pred HhccCCCCCchhh--HHHHHHHHH---ccCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 216 RKRENSMINGSVI--AVLIIHGFC---KGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 216 ~~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
... .....+..- ...|+.+-. -..+...|...-.+..+ +.||..--. .-..++.+.|+..++-.+++.+-+
T Consensus 215 ~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 215 RAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 543 111111110 011111110 12233444443333322 334433221 223455566666666666666655
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006281 290 LGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368 (652)
Q Consensus 290 ~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 368 (652)
....|+.. .+....+.|+..... +-.+.+.......-...+...-.++..|++..|..--+.... ..|....|
T Consensus 292 ~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 292 AEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred cCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 54444422 112223333322111 001111111111111122222233444555555444333332 34555556
Q ss_pred HHHHHHHHh-cCChHHHHHHHHHHHhC
Q 006281 369 SNLSKNLCK-RNKSDELVEVYKVLSAN 394 (652)
Q Consensus 369 ~~l~~~~~~-~~~~~~a~~~~~~~~~~ 394 (652)
..+.+.-.. .|+-+++...+.+....
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555554433 37777777777776654
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.58 E-value=0.58 Score=42.83 Aligned_cols=219 Identities=18% Similarity=0.084 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRL 492 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (652)
....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433211 01344444455555555555555555555431 1133344444455555555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 493 FHNMLEKGVAPDATTYTSLLE-GLCQETNLQAAFEVFNKSVNHDV--MLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+.........+ ......... .+...|+++.+...+++...... ......+......+...++.+++...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 55555432222 111111222 45555556666665555543221 112222333333344555555555555555442
Q ss_pred -CC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 570 -LG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 570 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
+. ....+..+...+...++++.|...+..+....|........ +...+...|.++++...+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh-HHHHHHHcCCHHHHHHHHHHHH
Confidence 22 23444455555555555555665555555555542112222 3333334444555555555443
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.57 E-value=0.29 Score=48.00 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCchh-HHHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDS-HVILLKS 582 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~~~l~~~ 582 (652)
+=..+..++.+.|+.++|++.|+++++..+.. ...+...|+.++...+.+.++..++.+-.+. |.+... |...+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33446666667788888888888877655432 3446677788888888888888887776442 222222 2211111
Q ss_pred Hhcccc---------------HHHHHHHHHHHHhcCCCCcHHH
Q 006281 583 LADARE---------------VEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 583 ~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
....|+ -..|.+.+.++.+.+|..+.++
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 111111 1346778888888877665444
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.51 E-value=0.58 Score=41.98 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=50.0
Q ss_pred CCHHHHHHhhhhhhccChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH-SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
+...+.+..++.+..+++..|.+.|+.+.+++.+.| +..+--.++.++-+.++++.|...+++...........-|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344556667777666777777777777765554433 4555556666666777777777777776665422222334444
Q ss_pred HHHHH
Q 006281 126 IPSLI 130 (652)
Q Consensus 126 i~~~~ 130 (652)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 44433
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.0041 Score=45.34 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
++..+..+|...|++++|+..+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.48 E-value=0.03 Score=54.43 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=57.8
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+...++.+..+|...|++++|+..|+++++.++.... ..|..+..+|...|++++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999998876322 35889999999999999999999998874
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.45 E-value=0.0074 Score=43.95 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=26.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCC-cc-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH----DVM-LA-RSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
+++.+...|...|++++|+..|+++++. +.. |. ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555554432 100 11 223444444444444444444444443
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.35 E-value=0.17 Score=47.09 Aligned_cols=232 Identities=15% Similarity=0.070 Sum_probs=94.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCC-CcCHHHHHHHHH
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKV----LSANDY-FTDMESYNVMVS 408 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~li~ 408 (652)
..+..|...+.++|+..+..-+.+- ...--.++..+..+.+..|.++++...--. ..+..- .--...|-.+.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777766654331 111223444445555555555554432111 111100 000112333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 006281 409 FLCTSGRLREAYGVIQEMKRK-GLDPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASG-----CSGNLKTYNILISK 479 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 479 (652)
++.+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...+-- --.....+..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 333333344444333322211 11110 1122234444445555566666655554320 01112345555555
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCHhhHH-----HHHHHHHcCCCHHHHHHHHHHhhh----CCCC-ccHHHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLE----KGVAPDATTYT-----SLLEGLCQETNLQAAFEVFNKSVN----HDVM-LARSILST 545 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~ 545 (652)
|.+..++++|.-+.....+ .++.--...|. .+.-++-..|....|.+..++..+ .|-. ........
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 6666666665555444332 12221111111 122334445555555555554432 2211 11223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 006281 546 FMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+.+.|...|+.+.|..-++.+-
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 5555555565555555554443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.3 Score=49.71 Aligned_cols=116 Identities=13% Similarity=-0.093 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCchhHHHHHHHHhccccHHHHH
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-----GHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
.+.+.|.++++.+....|. ..-..-.-.+.+...|++++|++.+++..... ...-.+.-+++.+.-.++|++|.
T Consensus 247 ~~~~~a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3455555555555544432 22222223344445555666666555433210 01112334555555666666666
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC-------chHHHHHHHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYP-------EPILLLLHALQ 635 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~ 635 (652)
+.+..+.+.+.-.........+-++...|+. ++|.+++++..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666544332222222233334455555 55555555443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.056 Score=48.66 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSSD----LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAEL 614 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 614 (652)
.|+.-+ .+.+.|++.+|.+.|...... ...+.++.-|+.++...|+++.|...|..+.+..|.. +..++- |
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK-l 221 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK-L 221 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH-H
Confidence 455444 456778899999999887663 3355688899999999999999999999999876655 455566 9
Q ss_pred HHHhhcCCCCchHHHHHHHHHHc
Q 006281 615 FASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 615 ~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+.+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.15 Score=46.89 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=93.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHcCCCHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS----LLEGLCQETNLQ 522 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~g~~~ 522 (652)
..|+..+|-..|+++.+. .+.|...+..--.+|.-.|+...-...+++.... ..||...|.. +.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666777777777765 3667777777777777777777777777777643 3444433332 333445677788
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-----hhHHHHHHHHhccccHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS-----DSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
+|.+.-++.++.+.. |.-...+....+.-.|++.++.++..+-..+=... -.|...+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888877777776654 54455566666777777887777766654421111 123344555566677777777776
Q ss_pred H
Q 006281 598 W 598 (652)
Q Consensus 598 ~ 598 (652)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.25 E-value=0.061 Score=41.95 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=71.1
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc----hhHHHHHHHHhcccc
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS----DSHVILLKSLADARE 588 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~ 588 (652)
++...|+.+.|++.|.+.+..-++ ..+.|+.-..++.-.|+.++|+.=+++..+ ..+.. .++..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567788999999999888877666 778888888888888999888888888776 22222 245566777788888
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006281 589 VEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~ 606 (652)
-+.|..-++.+.+.+...
T Consensus 131 dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHhHHHHHHhCCHH
Confidence 888888888888887544
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.093 Score=49.92 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
.++..+..+|.+.+++..|++..++.+..++. |...+..-..++...|+++.|+..|+++.+ +|.+-.+...++..-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35667778888999999999999999988876 777777788899999999999999999888 6767666666666555
Q ss_pred ccccH-HHHHHHHHHHHhcCC
Q 006281 585 DAREV-EMAIEHIKWIQESSP 604 (652)
Q Consensus 585 ~~g~~-~~A~~~~~~~~~~~~ 604 (652)
+..++ ++..++|..|...-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 54444 444778888776543
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.21 E-value=0.013 Score=36.71 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..+..++.+|...|++++|++.++++.+.+|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4566777777777777777777777777777764
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.81 Score=40.43 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=7.7
Q ss_pred HHhccccHHHHHHHHHH
Q 006281 582 SLADAREVEMAIEHIKW 598 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~ 598 (652)
.+....++..|...++.
T Consensus 199 v~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHhhHHHHHHHHHHhcc
Confidence 33334444444444444
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.27 Score=45.94 Aligned_cols=229 Identities=12% Similarity=0.067 Sum_probs=133.3
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCC-CCCHHHHHHHHHHHHh
Q 006281 375 LCKRNKSDELVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQE----MKRKGL-DPDVSFYNSLMEACCR 447 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~-~p~~~~~~~ll~~~~~ 447 (652)
+....+.++|+..+.+...+ +...-..++..+..+.++.|.+++++..--. ..+..- ..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888887776654 1111334677778888888888776643221 111100 0012344555555555
Q ss_pred cCChhhHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHcC
Q 006281 448 EDLLRPAKKLWDQMFAS-GCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEKG-----VAPDATTYTSLLEGLCQE 518 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~ 518 (652)
..++.+++.+-..-... |..|. -....++..++...+.++++++.|+....-. .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544433 22221 1233445666777778888888888776421 111234677788888888
Q ss_pred CCHHHHHHHHHHhhh----CCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----chhHHHHHHH
Q 006281 519 TNLQAAFEVFNKSVN----HDVMLARSIL-----STFMISLCRRGHFLVATKLLRGLSS---DLGH----SDSHVILLKS 582 (652)
Q Consensus 519 g~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~~l~~~ 582 (652)
.|+++|..+..++.+ .++.--..-| ..+.-++...|.+.+|.+..++..+ ..++ ......++.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888877766543 2222111112 2344456677888777777776543 2222 2334478888
Q ss_pred HhccccHHHHHHHHHHHHhcC
Q 006281 583 LADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|...|+.+.|..-|+++....
T Consensus 256 yR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHH
Confidence 888888888888887776654
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.08 E-value=2.3 Score=44.59 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=124.6
Q ss_pred hcCChHHHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 377 KRNKSDELVEVYKVLSA-------NDYFTDMESYNVMVSFLCTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+.+.|+.+|+...+ .+ .......+..+|.+.. +.+.|..++.+.-..|. |+...+-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455555555555544 33 2234555566665532 55667777777776653 243333222222
Q ss_pred HHh-cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 445 CCR-EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS--EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 445 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
... ..+...|.++|....+.|. +....+-.++-... ...+...|..++.+..+.| .|...--...+..+.. +++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 222 2345677777777777662 22222222211111 2346677777777777776 3232222223333333 666
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHH---H-h---cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhcc----ccHH
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISL---C-R---RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA----REVE 590 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 590 (652)
+.+.-.+..+.+.+.......-..+.... . . ..+.+.+...+.+... .+++.....++..|... .+++
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-QGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-ccCHHHHhhhcceeeecCCCCCChH
Confidence 66666666555555431111111111111 0 1 1234455555555444 34455556666666543 3577
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSS-S--YPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~ 637 (652)
.|...|..+...+ ....++ ++..+... | ++..|..++.+..+.
T Consensus 493 ~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQG---AQALFN-LGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 8888888777776 345555 66655432 1 146666666665543
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.05 E-value=1.6 Score=42.39 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
.|..+|-.+++-+..++..++.++++++|... .+.-+..|..-+.+=....++.....+|.+...... +...|..-+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 46777888888888888888888888887653 344556677667666666777777778877766533 455565555
Q ss_pred HHHHh
Q 006281 162 AVLAS 166 (652)
Q Consensus 162 ~~~~~ 166 (652)
..--+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 54433
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.03 E-value=1.6 Score=42.31 Aligned_cols=76 Identities=5% Similarity=0.088 Sum_probs=48.6
Q ss_pred Hhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 54 RVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 54 ~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
++++.+- ++..+.....+..+..-..+. +..|..-+..=...+++..++.+|.+..... .+...|...+.--.+.
T Consensus 47 qLiq~~~tq~s~~~~re~yeq~~~pfp~~--~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 47 QLIQYLETQESMDAEREMYEQLSSPFPIM--EHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRV 122 (660)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcCCCccc--cHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhh
Confidence 4444432 234556667777664433333 3456666666667899999999999998864 5577777777655544
Q ss_pred C
Q 006281 133 K 133 (652)
Q Consensus 133 g 133 (652)
+
T Consensus 123 n 123 (660)
T COG5107 123 N 123 (660)
T ss_pred C
Confidence 3
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.11 Score=41.57 Aligned_cols=81 Identities=20% Similarity=0.099 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---------------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
|..++..++.++++.|+.+....+++..-..+ ..|+..+..+++.+|+..|++..|+++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677888888888888888888877553221 234444444444444444444444444444432
Q ss_pred -CCCCCChhhHHHHHHH
Q 006281 148 -NCEDIGPEICNSLLAV 163 (652)
Q Consensus 148 -~~~~~~~~~~~~ll~~ 163 (652)
.+++.+..+|..|+.-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 2333334444444443
No 246
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=1.5 Score=41.90 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.|+...|...+.+++..++|++..++-.. + -++..|-.++.+|.+.|+..+|..+...+ . +..-
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~-----~~~r 268 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYGNKKEASKYIPKI-----P-----DEER 268 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C-----hHHH
Confidence 46888888899999999999988776432 1 25578999999999999999999888872 2 2445
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQ 460 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~ 460 (652)
+..|.+.|++.+|.+.--+
T Consensus 269 v~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 269 VEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 6788899999988776443
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.98 E-value=0.12 Score=40.43 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH---HHHHHHHHHHhcC
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS---ILSTFMISLCRRG 554 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 554 (652)
-+.+..|+.+.|++.|.+.+..-. -....|+.-..++.-.|+.++|+.-++++++..-.-... .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 356788999999999998886532 267789999999999999999999999888754222322 2444455677788
Q ss_pred CHHHHHHHHHHhhh
Q 006281 555 HFLVATKLLRGLSS 568 (652)
Q Consensus 555 ~~~~A~~~~~~~~~ 568 (652)
+.+.|..=|+...+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88999888877665
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.97 E-value=1.5 Score=41.37 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRL---REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 402 ~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 556666777766653 4556666666544322 23444445666666778888888888888762 213344444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 479 KF---SEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 479 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
.+ .. .....|...+..+....+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 44 33 2334566666666544444444
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.91 E-value=0.019 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILL 580 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~ 580 (652)
++..+...|.+.|++++|+++++++.+ .|.++..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 455666667777777777777776665 555555555444
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.85 E-value=0.68 Score=47.20 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHcCCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSL-LEGLCQETNLQAAFEVFNKSVNHD---VMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+++.... .....-.+..+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666643 3444443322 223445566666666666544311 112223344455556666666666
Q ss_pred HHHHHHhhhCCCCchhHH--HHHHHHhccccH-------HHHHHHHHHHH
Q 006281 560 TKLLRGLSSDLGHSDSHV--ILLKSLADAREV-------EMAIEHIKWIQ 600 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~-------~~A~~~~~~~~ 600 (652)
.+.+..+.+...-..++. ..+.++...|+. ++|.++++++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666666655333333322 222333345555 55555555544
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.82 E-value=1.7 Score=40.93 Aligned_cols=102 Identities=12% Similarity=-0.015 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCcH---HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 006281 191 GFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (652)
Q Consensus 191 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (652)
++..++.++...+.. ++|.++++.+... .++.+.++..-+..+.+.++.+.+.+++.+|... +.-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE---YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 334445555554443 3455555555544 3344445544555666677777777777777765 11122334444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhcCCCCCh
Q 006281 268 AEEFKL--MGSVFEREVVLKKKRKLGVAPRT 296 (652)
Q Consensus 268 l~~~~~--~g~~~~a~~~~~~~~~~~~~p~~ 296 (652)
+..+.. ......+...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 444322 12234455555555444444433
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.72 Score=40.75 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=31.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHhcCChhHHHHHH
Q 006281 299 YREFILGLIVERRICEAKELGEVIVSGKF---TIDDDVLNALIGSVSSIDPRSAIVFF 353 (652)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (652)
|...|-.+.-..++..|...++...+.+- +-+..+...++.+|..||.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 33344445555667777776665433321 22334566677777777777766554
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.78 E-value=0.16 Score=40.70 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006281 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILIS 478 (652)
Q Consensus 432 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 478 (652)
.|+..+..+++.+|+..|++..|.++.+...+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344455555555555555555555555544443 44444444444444
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.63 Score=37.75 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 006281 589 VEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~ 607 (652)
...|..-++++...-|+..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777777777777763
No 255
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.64 E-value=3.8 Score=43.62 Aligned_cols=232 Identities=9% Similarity=-0.009 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
+...-.....+....|+.++|......+-..|.. .+..++.++..+.+.|...... ++++|...-...+...-..+..
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 4444455566666677766665555555444332 4456666666666665543322 2222221111112222222332
Q ss_pred HHHhcCChhhHHHHHHHHHHc---------CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCH--hhHH
Q 006281 444 ACCREDLLRPAKKLWDQMFAS---------GCSGNLKTYNILISKFS--EVGEIEGALRLFHNMLEK-GVAPDA--TTYT 509 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~ 509 (652)
.+. .+.....+.+..+... .++|+...-..++.++. ...+.+.|..++...... ++.+.. ..+.
T Consensus 206 ~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~ 283 (644)
T PRK11619 206 QLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRD 283 (644)
T ss_pred hcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 221 1111111111111110 11122211122222222 234556677777665432 222211 1233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 588 (652)
.+.......+...++...++...... .+......-+....+.++++.+...+..|+.. ........-+++++...|+
T Consensus 284 ~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~ 361 (644)
T PRK11619 284 IVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGR 361 (644)
T ss_pred HHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC
Confidence 33333333322445555555433222 23444555555555777777777777777653 2233344466666666777
Q ss_pred HHHHHHHHHHHHh
Q 006281 589 VEMAIEHIKWIQE 601 (652)
Q Consensus 589 ~~~A~~~~~~~~~ 601 (652)
.++|...|+++..
T Consensus 362 ~~~A~~~~~~~a~ 374 (644)
T PRK11619 362 KAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777643
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.63 E-value=2.9 Score=42.33 Aligned_cols=185 Identities=9% Similarity=-0.039 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
...+|...+.--.+.|+.+.+.-+|+...-.- ..-...|--.+.-....|+.+-|..++....+-.++-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45667777777778888888888887765321 11222444444444555888888777776665543322222111112
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhhHHHHHHH-----
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSEVGEIEGAL---RLFHNMLEKGVAPDATTYTSLLEG----- 514 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~l~~~----- 514 (652)
-+-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.+. +++....+... +..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHH
Confidence 2334578899999988887762 443 22223344555677777776 33333322111 22222222222
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
+.-.++.+.|..++.++....+. +...|..++......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 23357888888888888776654 6677777777766555
No 257
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=3.5 Score=42.94 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=62.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC-CC-CcCHHHHHHHHHHH
Q 006281 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-EC-KPDFIAYRIVAEEF 271 (652)
Q Consensus 194 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~ 271 (652)
.+++-+...+.+..|+++-..+... ......++......+.+..+.. -.++++.+.++ +. --...+|..+.+..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p---~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLP---ESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCc---cccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3455555666666666666665543 1111344444555555443211 11222222211 00 12345666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006281 272 KLMGSVFEREVVLKKKRKLG----VAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (652)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (652)
...|+++-|..+++.-...+ +-.+...+...+.-+...|+.+....++-.+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 67777777776665422221 11123345556666677777777666654443
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.51 Score=40.20 Aligned_cols=57 Identities=12% Similarity=-0.091 Sum_probs=24.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.......|.+|+|...++......-.+.....-+.++...|+-++|+..|+++.+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 333444455555554444443321122222234444444555555555555544443
No 259
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.45 E-value=0.35 Score=40.62 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh---cCC-------HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc--
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCR---RGH-------FLVATKLLRGLSS-DLGHSDSHVILLKSLADAR-- 587 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-- 587 (652)
++.|.+.++.....++. |...+.....++.. ... +++|+.-|+++.. +|....++..++.++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 34555555555555554 55554444444332 222 3344444444444 6777778888888875543
Q ss_pred ---------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCC
Q 006281 588 ---------EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGA 645 (652)
Q Consensus 588 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 645 (652)
.+++|.+.++++...+|++. .|+.-+... ++|-++..++.+++.....+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--~Y~ksLe~~------~kap~lh~e~~~~~~~~q~~~ 144 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE--LYRKSLEMA------AKAPELHMEIHKQGLGQQAMG 144 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHH------HTHHHHHHHHHHSSS------
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHH------HhhHHHHHHHHHHHhhhhhcc
Confidence 36788888888889999873 333222222 468888888888876665433
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=2.1 Score=39.27 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.....|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777665443 3445566777777788888887777776443211111222223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHcCC
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQET 519 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g 519 (652)
..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+... |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444432 335666666677777777777777666555533 333 3334444444444444
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=4.4 Score=42.78 Aligned_cols=180 Identities=9% Similarity=0.052 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHH----HHcCCChhHHHHHHHHHHhCCCCCChhhHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS----LIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (652)
.......-|..+.+...+..|..+.+. .+ .+......+.+. +.+.|++++|...|-+-... ++| .
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 344566777777788888888776553 22 333444444433 44678888888877665432 111 2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc
Q 006281 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (652)
Q Consensus 159 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (652)
.++.-|........-...++.+.+.|+. +...-..|+.+|.+.++.+...++.+... . |....+ ....+..+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~ 475 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRK 475 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHH
Confidence 3455566666666677777777777764 44555667788888888888777776555 2 222111 1234455556
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
.+-.++|..+-..... ....... .+-..+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 6666666655443322 2222222 233457788887777654
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.30 E-value=0.68 Score=46.47 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 305 (652)
...|..|.+...++|+++-|++.|.+..+ |..++-.|...|+.+...++.+.....| .++....+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~ 411 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHH
Confidence 34555555555555555555555554332 2334444444555544444444444333 23334444
Q ss_pred HHccCCHHHHHHHH
Q 006281 306 LIVERRICEAKELG 319 (652)
Q Consensus 306 ~~~~~~~~~a~~~~ 319 (652)
+.-.|+.+++.+++
T Consensus 412 ~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 412 ALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44445555544443
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.23 E-value=1.5 Score=36.27 Aligned_cols=83 Identities=5% Similarity=0.022 Sum_probs=34.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc
Q 006281 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (652)
Q Consensus 125 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 204 (652)
++..+...+.......+++.+...+. .++..+|.++..|++.+ .......+.. ..+.+....+++.|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444444444444444444432 34444455555554432 1222222221 1123333444444545555
Q ss_pred HHHHHHHHHHH
Q 006281 205 LGQVLSMLDEV 215 (652)
Q Consensus 205 ~~~a~~~~~~~ 215 (652)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.18 E-value=4.2 Score=41.30 Aligned_cols=132 Identities=7% Similarity=-0.071 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccH-HHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF-GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
+-..|+.|+.---...+.+.+..+++.++.. .|-.+.| .....-=.+.|..+.+.++|++.... .|.+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 3445555555444444455566666666543 2332222 11111122346666666666666654 4444555543
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHhhC-CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 232 IIHGFC-KGKRVEEAFKVLDELRIR-ECK-PDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 232 l~~~~~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
.+..+. ..|+.+...+.|+..... |.. -....|...|..-..++++.....+++..++
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 333222 345555555556555443 211 1233455555555555566666666655554
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=1.5 Score=37.52 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSS 621 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (652)
+...+...|++++|+.-++.....+.+.. .-..|++.....|.+++|+..++.....+.. ......-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 34456677777777777776655433322 2235777777778888888777766555432 33445567777788
Q ss_pred CCCchHHHHHHHHHHcc
Q 006281 622 SYPEPILLLLHALQEKC 638 (652)
Q Consensus 622 g~~~~a~~~~~~~~~~g 638 (652)
|+.++|+..|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888887777664
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.4 Score=36.35 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
+..+...+.......+++.+...+. .+....+.++..+..-+....+..+.. ..+......+++.|.+.+.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHH
Confidence 3333333444444444444444432 333444444444443333333333331 012222333444455555555
Q ss_pred HHHHHHHHH
Q 006281 383 ELVEVYKVL 391 (652)
Q Consensus 383 ~a~~~~~~~ 391 (652)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.12 E-value=0.045 Score=31.84 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..+..++.++...|++++|++.++++.+.+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35667778888888888888888888877775
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.25 Score=41.93 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV 589 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 589 (652)
+.+.|++++|..-|.+++..-+... ...|..-..++.+.+.++.|+.-..+..+ .|....+...-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3445555555555555544332211 12233344445555555555555555544 333333444445555555666
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006281 590 EMAIEHIKWIQESSPTM 606 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~ 606 (652)
++|++-|+++.+.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 66666666666666654
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.94 E-value=0.019 Score=33.44 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 628 (652)
++++.+.+|++....++ |+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~n-la~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNN-LANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHH-HHHHHHHCcCHHhhc
Confidence 45666666766433333 777777777776664
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=7.6 Score=42.95 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChhhH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF----YNSLMEACCREDLLRPA 454 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~g~~~~a 454 (652)
++++.|+.-+..+. ...|.-.++.--++|.+.+|+.++. |+... |.+...-+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 55556655554443 1234444455556677777766654 34443 44444445566777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT--TYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
.-.|+..-+. .--+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 7777655321 23466777788888888887776532 1222 22456667777888888887777654
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.. ....+..|++...+++|.++.....
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 32 1223445666667777777665544
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.88 E-value=2.8 Score=37.76 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 571 (652)
.+-|.+.|.+..|..-++++++.-.. -....+..+..+|...|..++|.+.-+-+..+.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 34455555555555555555554221 0122344445555555555555555554444433
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.86 E-value=0.26 Score=44.30 Aligned_cols=105 Identities=16% Similarity=0.281 Sum_probs=66.8
Q ss_pred cCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006281 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 472 (652)
.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3666676666665433 4566666777777777777777788777776544321 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
+-...-.|-+ +-+=++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111112222 2244788899999999999999988899998877753
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=2 Score=35.82 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=71.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH-HHH--HHHHHHHhcCCH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS-ILS--TFMISLCRRGHF 556 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~g~~ 556 (652)
++.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.....|-.. -.. .-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 35566677777777777665431111 11222334556777888888887765544333322 111 122335567777
Q ss_pred HHHHHHHHHhhh--CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 557 LVATKLLRGLSS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 557 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
++...-++.+.. +|........|+-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 777777766644 2333345557777777888888888888877764
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.75 E-value=1.5 Score=36.35 Aligned_cols=109 Identities=15% Similarity=-0.074 Sum_probs=54.0
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHH-hccccHHHHHH
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL-ADAREVEMAIE 594 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~ 594 (652)
.+.++.+++..++.-+.-..+. .+..-..-...+.+.|++++|+++++.+....+..+....|...| ...|+. .=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~-~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP-SWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh-HHHH
Confidence 3556777777777766555544 233333334456677777777777777766544444333333333 333332 1222
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
+-.++.+.+++.. . ..|+..+....+...|..
T Consensus 99 ~A~evle~~~d~~-a--~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 99 YADEVLESGADPD-A--RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHhcCCChH-H--HHHHHHHHHhccccchhh
Confidence 2333444444331 1 114455544444444433
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=3.7 Score=38.33 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=72.8
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H--HHHHHHHHhcCChhh
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF--Y--NSLMEACCREDLLRP 453 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~--~~ll~~~~~~g~~~~ 453 (652)
.|+..+|-..++++.+.-+. |...+.-.=.+|.-.|+.+.-...++++... ..||... | ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555544322 5555555555666666666666666655533 1222211 1 222233345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
|++.-++..+.+ +.|...-.+....+-..|++.++.+...+-.+. +.-.-...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665544 445555555555555666666666655443321 0000111222222233444666666666653
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.61 E-value=0.059 Score=31.39 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..|..++.++...|++++|+..++++.+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667788888888888888888888887775
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.58 E-value=0.63 Score=41.99 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 006281 79 NFTHSPLSYHSILKSLSL-----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153 (652)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 153 (652)
+-.-|..+|-..+..+.. .+..+-.-..++.|.+.|+..|..+|+.||+.+-+..- . .
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------i-P 124 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------I-P 124 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------c-c
Confidence 445577778777777753 45666677778999999999999999999887654321 1 1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH-HHHHHHHHHHHh
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL-GQVLSMLDEVRK 217 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 217 (652)
..++..+.--|-+ +-+-++.++++|...|+-||..+-..+++++.+.+-. .+..+++-.|.+
T Consensus 125 ~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 125 QNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2222222222222 2355788888888888888888888888888877643 344444444443
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.52 E-value=2.5 Score=35.61 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=56.1
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCC
Q 006281 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (652)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (652)
++.+...++.|+...|..+++.+.+.|++.. +..+...++-+|+......+-.+. +....+.++--.|.++-
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL-- 88 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL-- 88 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh--
Confidence 3344445555555555555555555555332 233333444444444433332211 12222233222222220
Q ss_pred CCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
...+..+++.+...|++-+|.++....... +......++.+..+.++...-..+++-.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 012334555666666666666666554221 1122233455555555544444444333
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.49 E-value=1.1 Score=36.46 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=40.4
Q ss_pred hhHHHHHHHH---HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch
Q 006281 506 TTYTSLLEGL---CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574 (652)
Q Consensus 506 ~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 574 (652)
...+.|++.. ...++++++..+++.+.-..+. ....-..-...+...|++++|.++++++.++.+..+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 3444444433 3467777777777766555544 222222334456677888888888887777655443
No 280
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.43 E-value=4.5 Score=43.05 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh---
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPDVSFYNSLMEACCR--- 447 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~--- 447 (652)
...+.-.|+++.|++.+-. ......|.+++...+.-| |-+......-..+..... .|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445677999999988876 122223444444444332 222221111133322211 1122557778887775
Q ss_pred cCChhhHHHHHHHHHHc
Q 006281 448 EDLLRPAKKLWDQMFAS 464 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~ 464 (652)
..++.+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777766654
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.40 E-value=1.5 Score=38.09 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
..||.+.--+...|+++.|.+.|+...+.++.-+-...+. .-++.-.|++.-|.+-+.+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHH
Confidence 3455555555556666666666665555554432222222 11222345555555544443
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=2.6 Score=37.11 Aligned_cols=121 Identities=14% Similarity=-0.002 Sum_probs=62.9
Q ss_pred cCCCHHHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC----CCCch---hHHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHD-----VMLARSILSTFMISLCRR-GHFLVATKLLRGLSSD----LGHSD---SHVILLKSL 583 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~---~~~~l~~~~ 583 (652)
+.+++++|...++..++.- +..-......+...|... .++++|+..++..-+- ..... .+.-.+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3445555555555443321 111122233455566554 6777888888776541 11111 222334444
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHhhc--CCCCchHHHHHHHHHHc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISA----ELFASLSS--SSYPEPILLLLHALQEK 637 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~--~g~~~~a~~~~~~~~~~ 637 (652)
...+++.+|+.+|+++.....+++..-|. .+-.++|. .++.-.+...+++..+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 67889999999999988776655433332 12222333 34544555555555444
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.13 E-value=2 Score=43.26 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=80.7
Q ss_pred HhcCChHHHHHHHHH--HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 376 CKRNKSDELVEVYKV--LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.-.++++.+.++... +.. .+ +....+.++.-+.+.|..+.|+++-.+-.. -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 345666665555431 111 11 233466677777777777777766544321 1234456677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
|.++.+. .++...|..|.....++|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+.+..
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7665443 23566777777777777777777777776542 34455556666776666666665554
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.+- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 442 233333444456666666655443
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=3 Score=34.84 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=72.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH--HHHHcCCCH
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLL--EGLCQETNL 521 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~--~~~~~~g~~ 521 (652)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|+..|.+.-.....|-.. -...|= -.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666554322111 11122234456677777777777766433333222 111111 124467777
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 575 (652)
+......+-+-..+-......-..|.-+-.+.|++.+|.++|..+..+...|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 777777765444443334455666777777888888888888887775444443
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.01 E-value=0.063 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=11.8
Q ss_pred CCCCchhHHHHHHHHhccccHHHH
Q 006281 569 DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
+|.++.+|..++..|...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 444444455555555555555444
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.64 E-value=1.1 Score=37.27 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=69.2
Q ss_pred cHHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH----
Q 006281 539 ARSILSTFMIS---LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI---- 610 (652)
Q Consensus 539 ~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---- 610 (652)
+..+...|+.. -.+.++.+++..++..+.- .|..+..-..-++.+...|++.+|+.+++.+.+..|..+..-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455555544 4578899999999999977 777888888889999999999999999999988887653211
Q ss_pred ----------HHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 611 ----------SAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 611 ----------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+.........|.-.++..+.+.+..+
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 122222222334455666666666655
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.52 E-value=2.8 Score=41.60 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=75.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSS-VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (652)
.++.-..+.+++..-.+.-.+..+.. |+-. .|..|. --......++.++|++..+.|-. . +.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----S-------LGKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----h-------hchh
Confidence 44455556666666666666655543 3221 222211 11234467777777776654311 0 0000
Q ss_pred CChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHH
Q 006281 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (652)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 247 (652)
...+..-..++.+..++..|-..+-..+..++.+.|+.++|++.++++.+. ....+...+...|+.++...+.+.++..
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 000010111122222222222222333444555668888888888888765 2122233455567888888888888888
Q ss_pred HHHHHhh
Q 006281 248 VLDELRI 254 (652)
Q Consensus 248 ~~~~m~~ 254 (652)
++.+-.+
T Consensus 317 lL~kYdD 323 (539)
T PF04184_consen 317 LLAKYDD 323 (539)
T ss_pred HHHHhcc
Confidence 8877644
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.50 E-value=8.3 Score=37.89 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=57.6
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC---------
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG--------- 571 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--------- 571 (652)
..+|..++..+.+.|.++.|...+.++...+... .+.+....++.+-..|+..+|+..++.... ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3455555566666666666666666554433111 233444445555555666666655554433 000
Q ss_pred ------------------C-------chhHHHHHHHHhcc------ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 572 ------------------H-------SDSHVILLKSLADA------REVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 572 ------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
. ...+..++.-+... +..+++...++++.+..|.... .+..++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k-~~~~~a~~~ 302 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK-AWHSWALFN 302 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH-HHHHHHHHH
Confidence 0 01122233333333 6777888888888888776643 333344443
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=1.3 Score=40.89 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-----KGLDPDVSFYNSL 441 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 441 (652)
++..++..+...|+.+.+...++.+....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555666666666666666666665544 556666666666666666666666665543 3555555554444
Q ss_pred HHH
Q 006281 442 MEA 444 (652)
Q Consensus 442 l~~ 444 (652)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.10 E-value=2.6 Score=36.32 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD--FIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
...+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666788889999999999999999887644443 335677888888888888888887776543
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.10 E-value=3.6 Score=32.63 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccH---HHHHHHHHhcCcHH
Q 006281 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF---GVFIWKFCENAKLG 206 (652)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~ 206 (652)
.-.|.+++..++..+...+. +..-||-++--....-+-+-..++++.+-+ -.|.... -.++..++..|..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch-
Confidence 34577777788877776642 555666666555544444444444444422 2222221 2233333333211
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 286 (652)
.......++...+.|+-+.-.+++.++.+. -++++...-.+..+|.+.|+..++.+++.+
T Consensus 86 -------------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 86 -------------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 223344556677778888888888777642 345677777778888888888888888887
Q ss_pred HHhcCCC
Q 006281 287 KRKLGVA 293 (652)
Q Consensus 287 ~~~~~~~ 293 (652)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 7777654
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.09 E-value=8.1 Score=36.58 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhCCCccCcccHHHHHHHHHh--c----CcHHHHHHHHHHHHhccCCCC-CchhhHHHHHHHHHccCC--
Q 006281 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCE--N----AKLGQVLSMLDEVRKRENSMI-NGSVIAVLIIHGFCKGKR-- 241 (652)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~-- 241 (652)
+....+++.|.+.|+.-+.++|.+..-.... . -...+|..+++.|++...... ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555555442222211 1 234456666666666522111 111222222221 2222
Q ss_pred --HHHHHHHHHHHhhCCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 006281 242 --VEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGS--VFEREVVLKKKRKLGVAPRTNDYREFIL 304 (652)
Q Consensus 242 --~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 304 (652)
.+.++.+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34556666777666655432 222333332222222 3466777777888887777766655443
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.03 E-value=11 Score=37.73 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
|.....+++..+...-...-...+..+|..-| .+...|..++++|... ..++-..+|+++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666543 4556666666666666 345566666666665443 3333334444
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---hhHHHHHHHHhc
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS---DSHVILLKSLAD 585 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~ 585 (652)
-|.+ ++.+.+..+|.+++..-++- -..+|..+.... ..+.+...++..++....+.. ..+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 66666666666655433210 011232222211 234555555555554422111 112233344455
Q ss_pred cccHHHHHHHHHHHHhcCCCC
Q 006281 586 AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..++++|+++++.+++.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 666777777777666655443
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.92 E-value=1.3 Score=38.10 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=49.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHH----
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHV---- 577 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~---- 577 (652)
.+..+..-|++.|+.+.|.+.|.++......+. ...+-.+++...-.|++..+...+.++... +.+....+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455556666666666666666666555443322 223455566666666666666666655441 11111111
Q ss_pred HHHHHHhccccHHHHHHHHHHHHh
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.-+-.+...|++.+|.+.+-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 122233456677777666655543
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.89 E-value=1.3 Score=40.96 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHH
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATTYTSLL 512 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~ 512 (652)
+..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444555555555555555443 44444555555555555555555555554432 35555555444443
Q ss_pred HH
Q 006281 513 EG 514 (652)
Q Consensus 513 ~~ 514 (652)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.80 E-value=0.17 Score=29.88 Aligned_cols=24 Identities=21% Similarity=0.020 Sum_probs=13.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHH
Q 006281 576 HVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+..|+.+|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555556666666655553
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.80 E-value=0.23 Score=28.48 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+..++.++.+.|++++|++.++++.+..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445667777777777777777777777665
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.56 E-value=1 Score=38.44 Aligned_cols=92 Identities=17% Similarity=0.019 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCch-----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSD-----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
=..-+.+.|++++|..-+..+.. .|..+. .|..-+.+..+.+.++.|++--.++.+.+|.....+.. -+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R-RAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER-RAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH-HHHHHH
Confidence 34457788999999999988877 333332 23345567788999999999999999999987655554 678899
Q ss_pred cCCCCchHHHHHHHHHHcc
Q 006281 620 SSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 620 ~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++|++=|+++.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 9999999999999888763
No 299
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.40 E-value=4.6 Score=32.07 Aligned_cols=63 Identities=6% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
...-+..+..+|+-+.-.++++++.. .-++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555543 2234555555555555555655555555555555554
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=17 Score=38.42 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITL---DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (652)
--++.+.+.+.+++|+...+..... .+ ........|..+.-.|++++|-...-.|... +...|..-+..++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence 3456667778888888777654332 33 3456777888888888888887777766533 4445555555555
Q ss_pred hcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHh
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 201 (652)
..++... ++.-++......+...|..++..+..
T Consensus 435 e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 4444332 22223322223345556555555444
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.20 E-value=14 Score=37.00 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
..|....-+++..+...-.+.-...+..+|...| -+...|..++++|... ..+.-..+|+++++..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5566778888999999888899999999999865 3677899999999888 557789999999998886 66667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC----Cc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHh
Q 006281 547 MISLCRRGHFLVATKLLRGLSSDLG----HS---DSHVILLKSLADAREVEMAIEHIKWIQESSPT-MLQEISAELFASL 618 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 618 (652)
+..|.+ ++...+..+|.++..... ++ +.|.-+... -..+.+....+..++.+.... .-.+.+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777777 889999999988765211 11 123222221 145678888888888776443 3456667677888
Q ss_pred hcCCCCchHHHHHHHHHH
Q 006281 619 SSSSYPEPILLLLHALQE 636 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~ 636 (652)
....+|.+|+.+++...+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 999999999999884433
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.19 E-value=11 Score=35.78 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cC----ChhhHHHHHHHHHhCCC---ccCcccHHHHHHHHHhcCc-
Q 006281 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DG----YIDNALKMFDEMSHRGV---EFSTIGFGVFIWKFCENAK- 204 (652)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~- 204 (652)
+++.+.+++.+.+.|...+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677777777777666555443332222 11 25678888888887653 3455666666533 2222
Q ss_pred ---HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC-C--HHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006281 205 ---LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK-R--VEEAFKVLDELRIRECKPDFIAYRIVAE 269 (652)
Q Consensus 205 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 269 (652)
.+.+..+++.+... |....+..-+.+-+-++.... . +.++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566777777775 666655544433333333222 1 4578889999999999988877765543
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.08 E-value=0.26 Score=28.53 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=22.4
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.|..++..+...|++++|.+.++++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566777777777788888877777777665
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.94 E-value=0.76 Score=42.64 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
-|.++|.+++|+.+|.+.+.. .| |.+++..-..+|.+...+..|..-...++.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466666666666666655532 33 555555555566666666555555444443
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.85 E-value=25 Score=39.26 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=60.3
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch-hHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-SHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 593 (652)
+...+.+++|.-.|+..-+ ...-+.+|..+|++.+|..+..++........ .-..|+.-+...+++-+|.
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 3445566666666653211 22345567777777777777776655211111 1136677777788888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
+++++..+.- ...+..|++.-.|++|..+....
T Consensus 1020 ~il~e~~sd~--------~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1020 KILLEYLSDP--------EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHhcCH--------HHHHHHHhhHhHHHHHHHHHHhc
Confidence 7776665532 11344566777788887665543
No 306
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.79 E-value=21 Score=38.26 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=93.5
Q ss_pred hcCChhhHHHHHHHHHHcCC-CC-----CHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHH
Q 006281 447 REDLLRPAKKLWDQMFASGC-SG-----NLKTYNILISK--FSEVGEIEGALRLFH--------NMLEKGVAPDATTYTS 510 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~l~~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ 510 (652)
-.+++..|...++.+.+..- .| ....+..++.+ +-..|+.+.|+..|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46789899999998886411 11 12233333333 345799999999998 4444444433333332
Q ss_pred --HHHHHHc--CCCHHH--HHHHHHHhhhC---CCCccHHHHHHH-HHHHHhcCC--HHHHHHHHHHhhhC----CCCc-
Q 006281 511 --LLEGLCQ--ETNLQA--AFEVFNKSVNH---DVMLARSILSTF-MISLCRRGH--FLVATKLLRGLSSD----LGHS- 573 (652)
Q Consensus 511 --l~~~~~~--~g~~~~--a~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~----~~~~- 573 (652)
++-.+.. ....++ ..++++.+... .+..+..++..+ +.++..... ..++...+.+..+. ..+.
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1111222 222333 66677654321 122223333333 333332221 23554444432221 1111
Q ss_pred --h-hHHHHHHHHhccccHHHHHHHHHHHHh---cCCCCcHHHHH-----HHHHHhhcCCCCchHHHHHHHHHH
Q 006281 574 --D-SHVILLKSLADAREVEMAIEHIKWIQE---SSPTMLQEISA-----ELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 574 --~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
. ..+.+...+. .|+..+..+....... +.|+....+|. .+...+...|+.++|.+..++...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 2223444444 6777666555554433 22333444442 344457789999999988876653
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=20 Score=37.81 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=141.6
Q ss_pred ChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006281 345 DPRSAIVFFNFMIE-------KGRVPTLSTLSNLSKNLCKRN-----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (652)
Q Consensus 345 ~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (652)
|.+.|+.+|....+ .+ +......+..+|.+.. +.+.|..++....+.|.+ +.... +..++..
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~ 337 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYET 337 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHc
Confidence 55555555555544 44 2223344444555432 567788888888887653 43333 3333333
Q ss_pred c---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006281 413 S---GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487 (652)
Q Consensus 413 ~---g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (652)
. .+...|.++|...-+.|.. ...-+..++.... -..+...|..++.+..+.| .|...--...+..+.. ++++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 2 3578999999998888753 2222222211111 2346788899999888887 4443333333444444 7788
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-HHH---Hc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc----CC
Q 006281 488 GALRLFHNMLEKGVAPDATTYTSLL-EGL---CQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR----GH 555 (652)
Q Consensus 488 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~---~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 555 (652)
.+.-.+..+.+.|.. ...+-...+ ... .. ..+.+.+..++.+....| +......+.+.|..- .+
T Consensus 415 ~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 415 TALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCC
Confidence 888777777776654 222222221 111 11 225666777777665555 334455555555443 34
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCC
Q 006281 556 FLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++.|...+....... ......++..+.. .. ...|.++++++.+.+...
T Consensus 491 ~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence 888888888887765 5555566665532 33 788999998888876654
No 308
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.42 E-value=23 Score=37.97 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=118.9
Q ss_pred cCChHHHHHHHHHHHhCC-CCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 378 RNKSDELVEVYKVLSAND-YFTDM--ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
..+.+.|...+....... ..+.. .++..+....+..+...++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776654332 21111 123333333333322445555555543322 1333334444444567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH-hhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~ 533 (652)
...+..|.... .-...-.--+..++...|+.++|...|+.+... .+|-.++.+ .+.|..-. ...-.. ...
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCC-CCCCCCCchh
Confidence 77777764432 223344445566666677777777777776421 122222211 11221100 000000 000
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh------cCCCCc
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE------SSPTML 607 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~ 607 (652)
..+.-.+ -..-+..+...|...+|...+..+... .++.....++....+.|.++.++........ ..|.
T Consensus 403 ~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~-- 477 (644)
T PRK11619 403 SALTQGP--EMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPL-- 477 (644)
T ss_pred hhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc--
Confidence 0000000 112344566778999998888877765 3455666777777788888888776654332 1222
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccC
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEKCLDSE 642 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 642 (652)
.|...+..+...-.++.++-+----.|.++.+.
T Consensus 478 --~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 478 --AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred --chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 233344444454456665533333334455443
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.14 E-value=16 Score=35.81 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG---NLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577888888888899998888888887643111 334444455666677888888888888776
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=2.9 Score=38.63 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
++++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444443
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.00 E-value=7.9 Score=35.74 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=92.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCHHhHHHHHHHHHcCC--ChhHHHHH
Q 006281 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGK--NTQKAFSV 141 (652)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g--~~~~a~~~ 141 (652)
+.-..|++-...+........ |..++. +.....+|..+|+..-. ..+-.|..+...+++...... ....-.++
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEv 188 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEV 188 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHH
Confidence 345666666544444333333 544442 33456677777774322 235567777777777776522 23333444
Q ss_pred HHHHHh-CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 142 FNEVKF-NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
.+.+.. .+..++..+--.++..++..+++..-.++++..... +..-|...|..+|+.....|+..-...+.++
T Consensus 189 V~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 189 VDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 444443 245667777888888888888888888888876655 5666788888888888888888777777664
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.98 E-value=8.8 Score=32.44 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
+.+..+.+.+++|+...+..+++.+.+.|++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334444445555555555555555555554
No 313
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.87 E-value=0.51 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 006281 509 TSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
..|...|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.48 E-value=9.4 Score=33.46 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV--MLARSILSTFMIS 549 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 549 (652)
.+..++.+.+.+...+|+...+.-++.... |..+-..+++.+|-.|++++|..-++-+-...+ .+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455555666666666666655554222 444455566666666666666665554433322 2233445544443
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.16 E-value=18 Score=35.00 Aligned_cols=164 Identities=11% Similarity=-0.001 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHhcC---C---------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 467 SGNLKTYNILISKFSEVG---E---------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g---~---------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
+-|+.+|-.++..--..- . .+.-+.+++++++.+. -+...+..++..+.+..+.++..+.+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 678899988887543321 1 3456678888887743 36677788888888888999999999999988
Q ss_pred CCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHhhh-------CC-----CCchh-------HHHHHHHHhccccHHHH
Q 006281 535 DVMLARSILSTFMISLCR---RGHFLVATKLLRGLSS-------DL-----GHSDS-------HVILLKSLADAREVEMA 592 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-------~~-----~~~~~-------~~~l~~~~~~~g~~~~A 592 (652)
.+. +..+|..++..... .-.+++...+|.+... .. ..+.. +..+...+.+.|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 776 78888888877654 2245666666554422 11 01111 11233344678999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
+.+++.+.+.+.-.+..... ....+.++.|+.+.+.+++.
T Consensus 174 va~~Qa~lE~n~~~P~~~~~---------~~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 174 VALWQALLEFNFFRPESLSS---------SSFSERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHHHcCCcccccc---------ccHHHHHHHHHHHhCcCCCC
Confidence 99999999987644433332 11127778888888887654
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.13 E-value=9.3 Score=31.31 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDA---TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
..++++++..+++.|.-. .|+. .++... .+...|++.+|.++|++..+...
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777777777643 3332 233322 24566777777777777655543
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.06 E-value=20 Score=35.13 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=61.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHhhh--CCC----CchhHHHHHHHH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC-RRGHFLVATKLLRGLSS--DLG----HSDSHVILLKSL 583 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~~~----~~~~~~~l~~~~ 583 (652)
.+..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+.... ... .|....+.+-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 34567788888889998888888887767777777777765 66777777777776543 111 223333555555
Q ss_pred hccccH---------------HHHHHHHHHHHhcCC
Q 006281 584 ADAREV---------------EMAIEHIKWIQESSP 604 (652)
Q Consensus 584 ~~~g~~---------------~~A~~~~~~~~~~~~ 604 (652)
...++. ++|.+.+.++...-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 555555 777777776554443
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=30 Score=37.05 Aligned_cols=212 Identities=17% Similarity=0.095 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HhCC------------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQV----KVNK------------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
..+.+.++.++...+.+-.-.-+++.. ...+ ....+.....-+..+.+...++.|+.+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 345677777777777665444443333 2322 1223334556667777777777777775543
Q ss_pred CCCCCChhhHHHHHH----HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCC
Q 006281 148 NCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223 (652)
Q Consensus 148 ~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 223 (652)
..+......++. .+.+.|++++|...|-+-... +.| ..++.-|....+..+-..+++.+.+. |...
T Consensus 361 ---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla~ 430 (933)
T KOG2114|consen 361 ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLAN 430 (933)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-cccc
Confidence 223444444443 345678888888777654432 122 23555666667777777777777777 4433
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
....+.|+.+|.+.++.++-.++.+... .|.. -| ....+..+.+.+-.++|..+-.....+ ......
T Consensus 431 --~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~h-----e~vl~i- 498 (933)
T KOG2114|consen 431 --SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKKH-----EWVLDI- 498 (933)
T ss_pred --chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhccC-----HHHHHH-
Confidence 3344568888888888887777766554 2211 12 234556666666666665554333221 111111
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 006281 303 ILGLIVERRICEAKELGEV 321 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~ 321 (652)
.+-..+++++|.+.+..
T Consensus 499 --lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 499 --LLEDLHNYEEALRYISS 515 (933)
T ss_pred --HHHHhcCHHHHHHHHhc
Confidence 22334667777766544
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.66 E-value=20 Score=34.57 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006281 434 DVSFYNSLMEACCREDL------------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 501 (652)
|+.+|-.++..--..-. .+.-+.++++.++.+ +.+...+-.++..+.+..+.++..+-|+++.....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 78888888865433221 355677888888885 57778888889999999999999999999998643
Q ss_pred CCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhC------CC----Ccc-------HHHHHHHHHHHHhcCCHHHHHH
Q 006281 502 APDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNH------DV----MLA-------RSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~------~~----~~~-------~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
. +...|...++.... .-.++....+|.+++.. +. .+. ..++..+...+..+|..+.|..
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 3 67788888876544 33577788877776541 11 001 1224444555668999999999
Q ss_pred HHHHhhh
Q 006281 562 LLRGLSS 568 (652)
Q Consensus 562 ~~~~~~~ 568 (652)
+++.+.+
T Consensus 176 ~~Qa~lE 182 (321)
T PF08424_consen 176 LWQALLE 182 (321)
T ss_pred HHHHHHH
Confidence 9998877
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.55 E-value=0.048 Score=45.39 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHH
Q 006281 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (652)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 143 (652)
+++.+.+.+.+..+..+++.+...+...+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555544433444445555555555544444444433
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.51 E-value=3.3 Score=30.85 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHhhcCCCCc-hHHHHHHHH
Q 006281 561 KLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISAELFASLSSSSYPE-PILLLLHAL 634 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 634 (652)
.+-..+..+|.+......++..+...|++++|++.+-.+...++.. ....-..++.++...|.-+ .+.++-++|
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3444455577778888888888888888888888888888877655 2233344667776666644 344443333
No 322
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.25 E-value=15 Score=32.31 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
.|-++.|..=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+....-+-...|.- -++.-.|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHHH
Confidence 34444444444443333222 3346666666667777777777777776665322111111111 122344666666655
Q ss_pred HHHHHHc
Q 006281 458 WDQMFAS 464 (652)
Q Consensus 458 ~~~~~~~ 464 (652)
+...-..
T Consensus 156 ~~~fYQ~ 162 (297)
T COG4785 156 LLAFYQD 162 (297)
T ss_pred HHHHHhc
Confidence 5554443
No 323
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=39 Score=37.17 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (652)
.|.+....+.++.+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 356667777888888887766555566677777777664
No 324
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.02 E-value=1.7 Score=43.57 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
-.|+...|...+..+....+.-.......|...+.+.|...+|..++.+... ....+-.+..+++++....++++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4689999999988776655433333456688888888988899998887766 444555777999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 006281 596 IKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
++++.++.|+++ ++-+.|..+
T Consensus 699 ~~~a~~~~~~~~-~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCP-ECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCCh-hhHHHHHHH
Confidence 999999998874 333334433
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.01 E-value=1.6 Score=36.85 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh-hhCCCCchhHHHHHHHHhcc----------ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC--
Q 006281 556 FLVATKLLRGL-SSDLGHSDSHVILLKSLADA----------REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS-- 622 (652)
Q Consensus 556 ~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 622 (652)
++.|.+..+.. ..+|.+++.++..+.++... .-+++|+.-+++++..+|+....+|+ ++.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~-lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWC-LGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHhh
Confidence 45666666663 44788888777666665332 34678888888999999999777777 888876533
Q ss_pred --CCchHHHHHHHHHH
Q 006281 623 --YPEPILLLLHALQE 636 (652)
Q Consensus 623 --~~~~a~~~~~~~~~ 636 (652)
+..+|.++|++..+
T Consensus 86 ~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATE 101 (186)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
Confidence 44455555554443
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.71 E-value=20 Score=33.23 Aligned_cols=136 Identities=8% Similarity=0.127 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhc--CChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 415 RLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCRE--DLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 415 ~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.+.+|+.+|+.... ..+--|..+...+++..... .....-.++.+.+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35667777763222 12333666666666665541 1233344444555433 34677778888888888888888888
Q ss_pred HHHHHHHHC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh-----hhCCCCccHHHHHHHHHHH
Q 006281 491 RLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKS-----VNHDVMLARSILSTFMISL 550 (652)
Q Consensus 491 ~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 550 (652)
++++..... +..-|...|..+|+.....|+..-...+.++- .+.++..++..-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888877654 55557778888888888888877776666542 2344555555544444433
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=3.6 Score=41.66 Aligned_cols=130 Identities=15% Similarity=0.021 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (652)
..+.+...+.+.|..++|+++- +|...- .....+.|+++.|.++..+.. +..-|..|.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN--------SEVKWRQLGDA 675 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc--------chHHHHHHHHH
Confidence 4556666666666666665542 222111 123345677777777665443 24566777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHH
Q 006281 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315 (652)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 315 (652)
..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...-++...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 7788888888877766543 34455556666666554444444444442 23334455566666666
Q ss_pred HHHHH
Q 006281 316 KELGE 320 (652)
Q Consensus 316 ~~~~~ 320 (652)
.+++.
T Consensus 741 ~~lLi 745 (794)
T KOG0276|consen 741 LELLI 745 (794)
T ss_pred HHHHH
Confidence 66543
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.27 E-value=1.6 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555566666666666655544
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.14 E-value=21 Score=32.89 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 459 (652)
..+|+++|.-+....-+ .++-..++..+-...+...|...+.
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHH
Confidence 35677777777665322 2334445555555555555555443
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.88 E-value=44 Score=36.21 Aligned_cols=224 Identities=14% Similarity=0.007 Sum_probs=118.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVS-------FYNSLME-ACCREDLLRPAKKLWDQMFAS----GCSGNLKTYNILI 477 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 477 (652)
.....++++|..+..++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776543222221 2333322 223568888888888777654 2334566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHH--HHHcCCC--HHHHHHHHHHhhhCC----C--CccHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLE--GLCQETN--LQAAFEVFNKSVNHD----V--MLARSILS 544 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~--~~~~~g~--~~~a~~~~~~~~~~~----~--~~~~~~~~ 544 (652)
.+..-.|++++|..+.+...+..-.-+.. .|..+.. .+...|. .++....|....... + .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999988877765432121222 2333322 3455662 233333333222111 1 11223444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhhCCCCc-hh---HHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHH---HHH
Q 006281 545 TFMISLCR-RGHFLVATKLLRGLSSDLGHS-DS---HVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISA---ELF 615 (652)
Q Consensus 545 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---~l~ 615 (652)
.+..++.+ .+...++..-++--....+.+ .. +..++......|+.++|...+.++....... +.+.|. ..+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555444 222333333333322221111 11 2267788888999999999888877642222 122221 122
Q ss_pred HH--hhcCCCCchHHHHHHH
Q 006281 616 AS--LSSSSYPEPILLLLHA 633 (652)
Q Consensus 616 ~~--~~~~g~~~~a~~~~~~ 633 (652)
.. -...|+.+.+...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2367888888776664
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.34 E-value=22 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 006281 414 GRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCREDLLRPAKKLWDQMF 462 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 462 (652)
..+++|+.-|++..+....-.. .....++....+.+++++..+.+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4567777777766654222122 223444555566666666666666554
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.21 E-value=3.2 Score=30.83 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=11.0
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+.|++....+.+++|-+.+|+..|+++|+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
No 333
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.07 E-value=1.4 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006281 477 ISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~ 495 (652)
..+|...|++++|+..|++
T Consensus 8 g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHH
Confidence 3333333333333333333
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.04 E-value=83 Score=38.47 Aligned_cols=63 Identities=13% Similarity=-0.040 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
..+|-..++.....|+++.|...+-++.+.. .+..+...+..+.+.|+...|+..+++..+++
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4567778888888888888888777666532 56677778888888888888988888887553
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=9.4 Score=34.00 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATT-YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
|....+++.|+..|.+.+. +.|+..+ |..-+.++.+..+++.+.+--.++++..+. .......+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccH
Confidence 3344455566665555553 3444433 233344445555555555555544443332 12223334445555555666
Q ss_pred HHHHHHHh
Q 006281 559 ATKLLRGL 566 (652)
Q Consensus 559 A~~~~~~~ 566 (652)
|+..+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 66655554
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.72 E-value=5.9 Score=29.49 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 407 (652)
|.-++.+-++.+...+..|++....+.+++|.+.+++..|+++|+.+..+.-. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHH
Confidence 34455666677777778888888888888888888888888888877643211 233454444
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.51 E-value=25 Score=31.94 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.|..=|+.|..+++-.+-..+|+..+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34444444444444444444444433
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.41 E-value=6.3 Score=29.69 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=9.7
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+.|++....+.+++|.+.+++..|+++|+
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.27 E-value=3.7 Score=38.37 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
+-|.+.|.+++|+..|....... +-|.+++..-..+|.+...+..|..-.+..+..+- .-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 46899999999999999888763 34899999999999999999988887777664311 01234444444555567777
Q ss_pred HHHHHHHHhhhCCCC
Q 006281 523 AAFEVFNKSVNHDVM 537 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~ 537 (652)
+|.+-++..++..+.
T Consensus 183 EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLALEPK 197 (536)
T ss_pred HHHHhHHHHHhhCcc
Confidence 777777777766554
No 340
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=17 Score=32.53 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (652)
.+..+.+++...|++-++++...++.. .|.+..+|..-+.+....=+..+|.+-+..+++.+|....++...|
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 456677788888999999999888877 7778888888888888888889999999999999998866666544
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.48 E-value=13 Score=34.63 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 394 (652)
+.+..+-+-++++++.++..=++-|+-||..+++.+|+.+.+.+++.+|.++...|...
T Consensus 106 ~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34444555567777777777777788888888888888888888887777776665543
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.28 E-value=27 Score=31.17 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=9.4
Q ss_pred ccCCHHHHHHHHHHHHcC
Q 006281 308 VERRICEAKELGEVIVSG 325 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (652)
..+++.+|.++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.16 E-value=1.9 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=17.1
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+..++..+...|++++|...+++..+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666665555444
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.11 E-value=2.5 Score=27.62 Aligned_cols=32 Identities=19% Similarity=-0.032 Sum_probs=24.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...++-++.+.|++++|.+..+.+++..|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 34667778888888888888888888888874
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.87 E-value=1.1e+02 Score=37.68 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+|....+...+.|.++.|...+-.+.+.+ -+.++-..++.+-..|+...|+.++++..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3467777777777888888877776665555 233555666777777888888877776653
No 346
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.85 E-value=24 Score=32.83 Aligned_cols=143 Identities=11% Similarity=0.079 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHcCCCHH-HHHHHHHHhhh-----CCCCccHHHHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNM----LEKGVAPDATTYTSLLEGLCQETNLQ-AAFEVFNKSVN-----HDVMLARSILSTFM 547 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~-----~~~~~~~~~~~~l~ 547 (652)
..+.+.|+..-|.++-.-+ .+.+..++......++..+...+.-+ +-.++.+++++ ....-++.....++
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3466777776665554433 34566667766666666665443221 22333333332 12233566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
..|.+.|++.+|+..|-.-... ....+..+.. ....+-.|..........+-.|...|+...|
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~--~~~~~~~ll~---------------~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDP--SAFAYVMLLE---------------EWSTKGYPSEADLFIARAVLQYLCLGNLRDA 160 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HH--HHHHHHHHHH---------------HHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCCh--hHHHHHHHHH---------------HHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence 8888888887777665332110 0011111111 1122222333222233355567788999999
Q ss_pred HHHHHHHHHc
Q 006281 628 LLLLHALQEK 637 (652)
Q Consensus 628 ~~~~~~~~~~ 637 (652)
...++.+.++
T Consensus 161 ~~~~~~f~~~ 170 (260)
T PF04190_consen 161 NELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887776
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.59 E-value=10 Score=33.04 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHhhhC---CCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 519 TNLQAAFEVFNKSVNH---DVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+++.+++.++++. +-.+|+.++..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444332 1133444444455554444444444
No 348
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.17 E-value=61 Score=34.37 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
.+..++.....|+...+++....+.. +..+-..+.+.+...|-++
T Consensus 300 ~~e~~~~~i~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 300 PLEQILLAIFEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccc
Confidence 35566666667787777777665532 2334445555555555444
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.85 E-value=9.2 Score=33.53 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=41.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHH
Q 006281 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEE 270 (652)
Q Consensus 194 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~ 270 (652)
.-+..+.+.+.+.+++...+.-.+. .|.+......+++.++-.|++++|..-++-.-.. ...+...+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3344555566666666666655554 5555666666666677777777776655554432 122234455555443
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=83.84 E-value=32 Score=34.70 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=86.1
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHccCCH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIA--YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVERRI 312 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~ 312 (652)
++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4455554433333 3454444322 122333444556554 333334445444322 122344555566666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 006281 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
+.+..+++.-.......+..-.+.+..+...++. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll-- 155 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI-- 155 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--
Confidence 6555444321110000011112333333444443 33444455555443221 112333444566655444433
Q ss_pred HHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 006281 391 LSANDYFT---DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF---YNSLMEACCREDLLRPAKKLWDQMFAS 464 (652)
Q Consensus 391 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 464 (652)
+.|..+ |...++.+..+ +..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.
T Consensus 156 --~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 156 --DHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred --hcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 333322 22233333333 3345543 4444555665554322 123444344555544 44445555
Q ss_pred CCCCCH
Q 006281 465 GCSGNL 470 (652)
Q Consensus 465 ~~~~~~ 470 (652)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 655553
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.77 E-value=2.9 Score=25.29 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555566666655555554
No 352
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=83.54 E-value=48 Score=32.69 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 403 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
...|+.-|...|+..+|....+++----+ .....+.+++.+.-+.|+-+..+.+++.....| ..|-+.+-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 34567778888888888877776532212 256677888888888887777777777766554 3455556666544
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.54 E-value=41 Score=31.91 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC----REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V 483 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 483 (652)
..+++..+...+......+. ......+...|. ...+...|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 34567777777776665332 122222333222 22335556666665554442 2222223333333 2
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 006281 484 GEIEGALRLFHNMLEKGVA 502 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~ 502 (652)
.+..+|...|+...+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 2555556666655555543
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.23 E-value=12 Score=32.64 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444443333444444443333 33455555555554432 2244555555555555555555544
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.36 E-value=2 Score=23.01 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=5.6
Q ss_pred HHHHhccccHHHHHH
Q 006281 580 LKSLADAREVEMAIE 594 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~ 594 (652)
+.++...|+.++|..
T Consensus 8 a~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 8 ARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.07 E-value=77 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCchh
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHSDS 575 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 575 (652)
+...|++++|++.++++.--|.++..
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~~~~~ 540 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPLDPSE 540 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S-HHH
T ss_pred HHHcCCHHHHHHHHHhCCCCCCCHHH
Confidence 45788999999988887665543333
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.65 E-value=21 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 508 YTSLLEGLCQETNLQ--AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 508 ~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
|..--..|....+.+ +..+-++.+...+..|++.+..+.+++|.+.+++.-|.++++.+...
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333334444433333 56777777888899999999999999999999999999999988774
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.47 E-value=2.2 Score=39.91 Aligned_cols=88 Identities=7% Similarity=-0.067 Sum_probs=49.3
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
..|.++.|++.|...+..++. ...+|..-..++.+.++...|++=+..... ++.....|-.-..+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 345566666666665555543 444555555556666666666665555544 333444444445555556666666666
Q ss_pred HHHHHhcCCC
Q 006281 596 IKWIQESSPT 605 (652)
Q Consensus 596 ~~~~~~~~~~ 605 (652)
+..+.+.+-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 6666655543
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.99 E-value=64 Score=31.73 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=62.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCC-CchhHHHHHHHH-hccccHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLG-HSDSHVILLKSL-ADAREVEMAIEHIKWIQESSP-----TMLQEISAELFAS 617 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~ 617 (652)
.+..+.+.|.+..|.++.+-+.. +|. +|-.....+..| .+.++++--+++.+....... ..+...+. ++-+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S-~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS-IALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH-HHHH
Confidence 46678899999999999999887 666 555555666666 578888888888887665211 12234444 5556
Q ss_pred hhcCCCC---------------chHHHHHHHHHH
Q 006281 618 LSSSSYP---------------EPILLLLHALQE 636 (652)
Q Consensus 618 ~~~~g~~---------------~~a~~~~~~~~~ 636 (652)
+...++. ++|.+.++++..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 6666666 788877776554
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.89 E-value=1e+02 Score=34.07 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC--------CCHHHHHHH-----HHHhhh--CCCCc------
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--------TNLQAAFEV-----FNKSVN--HDVML------ 538 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~~a~~~-----~~~~~~--~~~~~------ 538 (652)
|......+-+..+++.+....-.++..-.+.++..|... ++-+++.+. ...++. ....|
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 445556667777777777554444555555665555421 111122222 111111 11111
Q ss_pred --cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 539 --ARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 539 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
....|....-.+.+.|+.++|+.++-....
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 233455555556688888888877655443
No 361
>PRK10941 hypothetical protein; Provisional
Probab=79.82 E-value=14 Score=34.37 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..+.+-.+|.+.++++.|.++.+.+.. .|.++..+.--+-+|.+.|.+..|..=++...+..|+.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 355566677788888888888888777 666776777777888888888888888888887777664
No 362
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.72 E-value=3 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
-.++.++.+.|++++|.+.++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666666666666666655
No 363
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.68 E-value=5.2 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMK 427 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~ 427 (652)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666666554
No 364
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.62 E-value=1.1 Score=37.05 Aligned_cols=84 Identities=6% Similarity=0.129 Sum_probs=39.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 205 (652)
+..+.+.+.......+++.+...+...+....+.++..|++.++.+....+++. .+.+....+++.|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 444444555555555555555444334455555555555555555555555441 1113333444445555555
Q ss_pred HHHHHHHHHHH
Q 006281 206 GQVLSMLDEVR 216 (652)
Q Consensus 206 ~~a~~~~~~~~ 216 (652)
+++.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 55555555443
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.53 E-value=11 Score=33.63 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=75.3
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
.|....+++.|+..|.+.+..++. ....|..-+.++.+..+++.+..-..+..+ .|........++........+++|
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 366677889999988888777654 345677778888889999998888777777 666667777888888999999999
Q ss_pred HHHHHHHHhc----CCCCcHHHHHHHHH
Q 006281 593 IEHIKWIQES----SPTMLQEISAELFA 616 (652)
Q Consensus 593 ~~~~~~~~~~----~~~~~~~~~~~l~~ 616 (652)
+..+.++... .+..-..+...|..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 9999888543 33333444554443
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.49 E-value=71 Score=31.91 Aligned_cols=133 Identities=7% Similarity=-0.120 Sum_probs=85.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 006281 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (652)
Q Consensus 196 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 275 (652)
|......|++-.|-+-+.....+....|. .-......+...|+++.+.+.+...... +.....+...+++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 33445568877776665555555132333 2222334466789999999888776543 3345667888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHH
Q 006281 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333 (652)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (652)
++++|..+-+.|....++.. ..........-..|-++++...++.+...+.+.+...
T Consensus 372 r~~~a~s~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred hHHHHHHHHHHHhccccCCh-hheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 99999999988887766532 2222222233345777888888888887766555443
No 367
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.96 E-value=75 Score=31.92 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=40.4
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--hhcCCCCchHHHHHHHHH
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS--LSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 635 (652)
+..|+.+++-.|++++|..++.++...-+.....-.. +... -.+.|+...|...+++-.
T Consensus 622 ~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~-~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 622 FANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQAT-VLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHH-HHHHHHHHhcCCCcchHHHHHhcc
Confidence 4468889999999999999998777665532222211 2222 347899999998888543
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.91 E-value=29 Score=27.93 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=14.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
-|+-++.+.|+|++++.+++.+.+..|++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 34444455555555555555555555444
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.83 E-value=14 Score=29.66 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHhccc---cHHHHHHHHHHHHh-cCCCCc-HHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 570 LGHSDSHVILLKSLADAR---EVEMAIEHIKWIQE-SSPTML-QEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.....+...++|++.+.. +..+.+.+++.+.+ ..|+.. ..+|. |.-++.+.++|++++.+++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyY-LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYY-LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhh-hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 334456678999997765 46677889999986 444443 33444 888899999999999999987765
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.56 E-value=1e+02 Score=33.17 Aligned_cols=186 Identities=9% Similarity=0.037 Sum_probs=93.0
Q ss_pred HHHHHHHHhhcCCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCccCHH-----hHHHHHHHHHcCCChhH
Q 006281 66 LALGFFNWASQQPNFTHS--PLSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDSS-----VYRFIIPSLIQGKNTQK 137 (652)
Q Consensus 66 ~a~~~f~~~~~~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~ 137 (652)
.|++.++.+.++....|. ..++-.+...+. ...+++.|+..+++....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 455555555554444443 345556666665 6888899988888765433222221 2234455555555444
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHhcCChhhHHHHHHHHHhCC---CccCcccHHHHHHHHH--hcCcHHH
Q 006281 138 AFSVFNEVKFNC----EDIGPEICNSL-LAVLASDGYIDNALKMFDEMSHRG---VEFSTIGFGVFIWKFC--ENAKLGQ 207 (652)
Q Consensus 138 a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~g~~~~ 207 (652)
|....++....- ..+-...+.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 777777765431 11111222222 222223368888888887776432 2222333333333333 3354555
Q ss_pred HHHHHHHHHhc-------cCCCCCchhhHHHHHHHH--HccCCHHHHHHHHHHH
Q 006281 208 VLSMLDEVRKR-------ENSMINGSVIAVLIIHGF--CKGKRVEEAFKVLDEL 252 (652)
Q Consensus 208 a~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m 252 (652)
+.+.++.+... +...++...++..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66555555322 011233344454444443 3456655555555444
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.90 E-value=5.6 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=13.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHh
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.++.+|...|+.+.|.++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 355555555555666555555554
No 372
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.63 E-value=80 Score=33.54 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQ 109 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 109 (652)
+.-|+ .+..+.-+|.++.|.++++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 44454 56666777777777777743
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.24 E-value=30 Score=31.85 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH-----
Q 006281 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC----- 551 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 551 (652)
|++++..+++.+++...-+.-+.--+.-......-|-.|.+.|.+..+.++-..-+...-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 667777777777665544333211111223333344456677777666666554433221111122555554443
Q ss_pred hcCCHHHHHHHH
Q 006281 552 RRGHFLVATKLL 563 (652)
Q Consensus 552 ~~g~~~~A~~~~ 563 (652)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777666
No 374
>PRK09687 putative lyase; Provisional
Probab=76.79 E-value=68 Score=30.25 Aligned_cols=223 Identities=11% Similarity=0.042 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 006281 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL----REAYGVIQEMKRKGLDPDVSFY 438 (652)
Q Consensus 363 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~p~~~~~ 438 (652)
++.......+.++...|..+... .+..+... +|...-...+.++.+.|+. +++...+..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~-~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFR-LAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHH-HHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 35555555566666666533333 33333332 3555556666667777653 4566777666433 3455555
Q ss_pred HHHHHHHHhcCCh-----hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 439 NSLMEACCREDLL-----RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 439 ~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555554321 122333333332 3455666666777777766 4566666666642 34445555555
Q ss_pred HHHcCC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
++.+.+ +...+...+..++. .++..+-...+.++.+.|+ ..|+..+-+..+++. .....+.++...|.. +|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~---~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT---VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc---hHHHHHHHHHhcCCH-hH
Confidence 555543 23456666655553 2355666777777777777 455555555555322 334566666677764 68
Q ss_pred HHHHHHHHhcCCCC
Q 006281 593 IEHIKWIQESSPTM 606 (652)
Q Consensus 593 ~~~~~~~~~~~~~~ 606 (652)
+..+.++.+.+++.
T Consensus 254 ~p~L~~l~~~~~d~ 267 (280)
T PRK09687 254 LPVLDTLLYKFDDN 267 (280)
T ss_pred HHHHHHHHhhCCCh
Confidence 88888887766643
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.96 E-value=41 Score=33.37 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLK--TYNILISKFSE--VGEIEGALRLFHNMLEK 499 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~A~~~~~~m~~~ 499 (652)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999999886 555554 45555566653 56788888888887754
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.76 E-value=4.8 Score=39.75 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=46.9
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+...++++.|+.++.++++.++. ....|..-..++.+.+++..|+.=+.++.+ +|.....|..-+.++...+++.+|.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 33445556666666655555432 222333333455555555555554444444 4444444555555555555666666
Q ss_pred HHHHHHHhcCCCC
Q 006281 594 EHIKWIQESSPTM 606 (652)
Q Consensus 594 ~~~~~~~~~~~~~ 606 (652)
..|+......|+.
T Consensus 93 ~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 93 LDLEKVKKLAPND 105 (476)
T ss_pred HHHHHhhhcCcCc
Confidence 6666655555554
No 377
>PRK09687 putative lyase; Provisional
Probab=75.73 E-value=72 Score=30.06 Aligned_cols=215 Identities=10% Similarity=0.019 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-----H
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS----DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL-----R 417 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~ 417 (652)
.++...+..+... ++...=...+.++...|+. ..+...+..+.... ++..+-...+.++...+.. .
T Consensus 53 ~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRASAINATGHRCKKNPLYSP 127 (280)
T ss_pred chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccccch
Confidence 4444444444332 2444444455566666653 45666666663332 4555555555555554321 2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNM 496 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 496 (652)
.+...+..... .++..+-...+.++.+.++ ..+...+-.+.+ .++...-...+.++.+.+ ....+...+..+
T Consensus 128 ~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~ 200 (280)
T PRK09687 128 KIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAM 200 (280)
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 33344433333 3355566667777777776 456666666665 345555555666666543 244666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhH
Q 006281 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 576 (652)
.. .++...-...+.++.+.|+. .++..+-+.++.+. .....+.++...|.. +|...+..+....++....
T Consensus 201 L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 201 LQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEII 270 (280)
T ss_pred hc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHH
Confidence 63 34667777788888888884 56666665666533 234677788888885 6888888887644455544
Q ss_pred HHHHHHH
Q 006281 577 VILLKSL 583 (652)
Q Consensus 577 ~~l~~~~ 583 (652)
....+++
T Consensus 271 ~~a~~a~ 277 (280)
T PRK09687 271 TKAIDKL 277 (280)
T ss_pred HHHHHHH
Confidence 4444433
No 378
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.65 E-value=62 Score=36.30 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--cc-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh
Q 006281 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LA-RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584 (652)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 584 (652)
|...++.+-+.+-.+.+.++-..+++.-.. |. ..+++++.+-....|.+.+|.+.+-..+.....-.....++-.++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 455566666677777777776666553221 11 223555555566666666666555443332112223334444445
Q ss_pred ccccHH------------HHHH-HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHH
Q 006281 585 DAREVE------------MAIE-HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 585 ~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
..|.++ +... +.+..-...|......|+.|...+...+++.+|-.+.
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 544443 3333 3333444445555556664555555667776665543
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=55 Score=33.76 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=88.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
.-.|+++.|..++..+.+ ..-+.+...+.+.|-.++|+++-. .|+.. .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s~-------D~d~r-----Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELST-------DPDQR-----FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcCC-------Chhhh-----hhhhhhcCcHHHHH
Confidence 345666666665544332 234455566666676666655421 22211 22334667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
++..+. .+..-|..|..+..+.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 765543 3556677788888888888888877776553 3455556666677665555555555555
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 536 VMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.. +... .+|...|+++++.+++..-
T Consensus 723 ~~-N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN-NLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc-chHH-----HHHHHcCCHHHHHHHHHhc
Confidence 43 3222 2455667777777776554
No 380
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.09 E-value=9.1 Score=21.75 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+|..+...|...|++++|...|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 381
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.06 E-value=46 Score=27.42 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 006281 87 YHSILKSLSLSRQINAIDSVLKQV 110 (652)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~ 110 (652)
.+.++.-.+..+++....++++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 466777777777777777777766
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.05 E-value=1.4e+02 Score=32.11 Aligned_cols=103 Identities=10% Similarity=0.020 Sum_probs=66.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 006281 196 IWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (652)
Q Consensus 196 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (652)
++.+.+.+.+++|+...+..... .+. ....+...++.+.-.|++++|-...-.|... +..-|.-.+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 44566778888888777766544 222 3456667888888889999998888888765 66667666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 006281 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308 (652)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 308 (652)
.++......++ .......+...|..++..+..
T Consensus 436 ~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 66655433332 111122345567777776665
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.39 E-value=13 Score=26.60 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=26.5
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcCCHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
...+.++|+..|+.+++....+.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655443221 2355566666666666666554
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.08 E-value=91 Score=29.56 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=85.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 006281 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----E 448 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~ 448 (652)
..+++..+...+......+ +......+...|.. ..+..+|..+|+..-+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 5578888888888887743 33445555555544 34678899999987777643 333334444444 3
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-------EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ---- 517 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---- 517 (652)
.+..+|..+++...+.|..+...+...+...|..-. +...|...|.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478899999999998874433233334444443321 2224666666665554 22333333333322
Q ss_pred CCCHHHHHHHHHHhhhCCC
Q 006281 518 ETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~ 536 (652)
..+.++|...|++..+.+.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2255566666665555543
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.47 E-value=24 Score=27.87 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=15.0
Q ss_pred HCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 498 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
...+.|++.....-+++|-+.+|+..|.++|+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE 108 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILE 108 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33444444444444444444444444444444
No 386
>PRK12798 chemotaxis protein; Reviewed
Probab=70.55 E-value=1.2e+02 Score=30.14 Aligned_cols=220 Identities=12% Similarity=0.039 Sum_probs=132.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hc
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC--CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS-EV 483 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 483 (652)
+-.....|+++-.. .+...+..|+.. ..++.+. .-.|+.+++.+.+..+.....++....|-.|+.+-. ..
T Consensus 88 ~iy~lSGGnP~vlr----~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~ 161 (421)
T PRK12798 88 LIYLLSGGNPATLR----KLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA 161 (421)
T ss_pred HhhHhcCCCHHHHH----HHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc
Confidence 33334556765444 444444333322 2222222 236899999999999988777888888888888754 56
Q ss_pred CCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCcc-HHHHHHHHHHHHhcCC--
Q 006281 484 GEIEGALRLFHNMLEKGVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLA-RSILSTFMISLCRRGH-- 555 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~-- 555 (652)
.++.+|+.+|+...-. .|- ......-+......|+.+++..+-......- ..|- ...+..+...+.+.++
T Consensus 162 ~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~ 239 (421)
T PRK12798 162 TDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI 239 (421)
T ss_pred cCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc
Confidence 7899999999988743 343 2344445556778999999877776655432 2222 2233444445555443
Q ss_pred -HHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHh--hcCCCCchHHHH
Q 006281 556 -FLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASL--SSSSYPEPILLL 630 (652)
Q Consensus 556 -~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~--~~~g~~~~a~~~ 630 (652)
.+.-..++..|.. ......|..+++.-.-.|+.+-|.-.-+++........ ..... |..+. .-..+.++|.+.
T Consensus 240 ~~~~l~~~ls~~d~-~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~-LY~aaa~v~s~~~~~al~~ 317 (421)
T PRK12798 240 RDARLVEILSFMDP-ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARAR-LYRGAALVASDDAESALEE 317 (421)
T ss_pred cHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHH-HHHHHHccCcccHHHHHHH
Confidence 3333333333322 22345788899999999999999999999887643321 22222 33332 235567777766
Q ss_pred HHHHHH
Q 006281 631 LHALQE 636 (652)
Q Consensus 631 ~~~~~~ 636 (652)
+..+-.
T Consensus 318 L~~I~~ 323 (421)
T PRK12798 318 LSQIDR 323 (421)
T ss_pred HhcCCh
Confidence 665443
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.93 E-value=13 Score=23.13 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=8.4
Q ss_pred HHHHcCCCHHHHHHHHHHhh
Q 006281 513 EGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~ 532 (652)
.+|...|+.+.|.+++++.+
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444433
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.79 E-value=62 Score=26.68 Aligned_cols=93 Identities=12% Similarity=0.201 Sum_probs=65.5
Q ss_pred HHhCCCccCHH--hHHHHHHHHHcCCChhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-hhhHHHHHHHHH
Q 006281 110 VKVNKITLDSS--VYRFIIPSLIQGKNTQKAFSVFNEVKFNCE-----DIGPEICNSLLAVLASDGY-IDNALKMFDEMS 181 (652)
Q Consensus 110 ~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~ 181 (652)
|.+.+..++.. ..+.++.-....+++...+.+++.+..... ..+...|+.++.+.++... --.+..+|.-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444443 347777777788888888888887743211 2356689999999977666 445778888888
Q ss_pred hCCCccCcccHHHHHHHHHhc
Q 006281 182 HRGVEFSTIGFGVFIWKFCEN 202 (652)
Q Consensus 182 ~~~~~~~~~~~~~ll~~~~~~ 202 (652)
+.+.+++...|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 888888999999999776543
No 389
>PRK10941 hypothetical protein; Provisional
Probab=68.16 E-value=32 Score=32.06 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=51.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.+-.+|.+.++++.|+.+.+.+....|+.+...- .-+.+|.+.|.+..|..=++.+.++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~R-DRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIR-DRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5667889999999999999999999999865444 4888899999999999988888765
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.46 E-value=52 Score=24.92 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006281 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (652)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 473 (652)
..+...|++++|..+.+.+ ..||...|..|.. .+.|..+....-+.+|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455566666666665554 2566666554432 35555555555555555555 4443333
No 391
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.19 E-value=12 Score=34.52 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=40.3
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
..+.|+.++|..+|+.++...+. ++.++..+........++-+|-+++-++.. +|.+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 34667788888888877777765 566666666666666777777777766655 5555443
No 392
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.72 E-value=1.1e+02 Score=28.51 Aligned_cols=58 Identities=5% Similarity=0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (652)
Q Consensus 230 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 288 (652)
+.....|..+|.+.+|.++.+....-. +.+...|-.++..+...|+--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345567778888888888887776642 2366677778888888888766766666553
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.69 E-value=22 Score=36.26 Aligned_cols=100 Identities=10% Similarity=-0.020 Sum_probs=68.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
...|+...|...+.........-..+....|.+...+.|-...|-.++.+.+..... .+-++..+..++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHH
Confidence 346888888888877764322223345556677777777778888888877776633 5556777888888888889998
Q ss_pred HHHHHhhh-CCCCchhHHHHHH
Q 006281 561 KLLRGLSS-DLGHSDSHVILLK 581 (652)
Q Consensus 561 ~~~~~~~~-~~~~~~~~~~l~~ 581 (652)
+.|+.+.. ++.++..-..|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 88887766 5666655554433
No 394
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.92 E-value=1.6e+02 Score=29.94 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=123.4
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhhHHHH
Q 006281 386 EVYKVLSANDYFTDMESYNVMVSFLCTS------GRLREAYGVIQEMKRKG-LDP-DVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~a~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
.+|+...+. .|+...|+..|..|... ......+.+|+.....+ ..+ ....|..+...++......+ .
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~---~ 377 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE---V 377 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---H
Confidence 555555442 23555666666555432 23445556666655443 222 23445555555555443332 2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHhhhC
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEV-GEIEG-ALRLFHNMLEKGVAPDATTYTSLLE-GLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 534 (652)
-..+...++..+...|-.-++...+. .+++- -.++|......-..+....|++..+ .+......+.....+..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-- 455 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-- 455 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc--
Confidence 22333233466667776666655532 22221 2223333433322333444444441 1111111222222222222
Q ss_pred CCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-hhHHHHHHHH--hccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 535 DVMLAR-SILSTFMISLCRRGHFLVATKLLRGLSSDLGHS-DSHVILLKSL--ADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 535 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
.++. ..-+.+++.+.+.|-..+|...+..+..-|+-. .-+...+..- ...-+...+.++|+.+...-. ..+.+
T Consensus 456 --~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~l 532 (568)
T KOG2396|consen 456 --GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDL 532 (568)
T ss_pred --CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHH
Confidence 2222 234667788888899999999999988855433 3333333322 112237778888888887654 33566
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 611 SAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
|-.++..-...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 65566666688888888888776654
No 395
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.71 E-value=11 Score=33.60 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=15.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.++....+.|+.++|.+.+.++....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45555556666666666666655543
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.27 E-value=53 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887766
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.04 E-value=11 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=9.1
Q ss_pred HHHHHHhccccHHHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
.++.++.+.|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 398
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.72 E-value=1.8e+02 Score=29.46 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (652)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 278 (652)
..+.++...+.+..+...|.....+.+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35566777777777776665555555666666666666543
No 399
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.66 E-value=97 Score=28.08 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=42.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
....++...|++-+++++-.+++...|.+....|. -+.+....=+..+|..=++++.+.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~fr-RakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFR-RAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHhhcCHHHHHHHHHHHHhc
Confidence 45556678899999999999999999998666555 555555555566676666665554
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.49 E-value=3.1 Score=39.04 Aligned_cols=91 Identities=12% Similarity=-0.079 Sum_probs=70.8
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 628 (652)
....|.+++|++.+..... +|+....|..-+.++.+.++...|+.-+..+.+.+|+.. .-|-.-..+-...|+|++|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa-~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA-KGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc-cccchhhHHHHHhhchHHHH
Confidence 3456889999999998877 666667777888899999999999999999999998763 22222333445679999999
Q ss_pred HHHHHHHHccccc
Q 006281 629 LLLHALQEKCLDS 641 (652)
Q Consensus 629 ~~~~~~~~~g~~~ 641 (652)
..+....+.++..
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 9999888876654
No 401
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.28 E-value=2.3e+02 Score=30.48 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDAT--TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.--|+-++|..+.++|.... .|-.. -.-++.-+|+-.|+-....+++.-++. ++.-|+.-...+.-++.-..+.+.
T Consensus 512 ~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhh
Confidence 33455566777777776432 11111 112344466666666666666553332 233344444444444555566666
Q ss_pred HHHHHHHhhhCC-CCc--hhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 559 ATKLLRGLSSDL-GHS--DSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 559 A~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
...+++-+.+.. +.. .+-..|+-+|.-.|+ .+|+.+++-+..
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 666666555521 111 122345555555554 456777766655
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.76 E-value=76 Score=27.28 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhCCCCcc--HHH-----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 521 LQAAFEVFNKSVNHDVMLA--RSI-----LSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
.+.|+-+|+.+.+.-..|. ... -...+-.|.+.|.+++|.+++++...++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 5677777775444333221 111 2223445667777777777777776654433
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.43 E-value=32 Score=21.88 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=23.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006281 95 SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (652)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (652)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 356666677777777777777777777766654
No 404
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.94 E-value=22 Score=25.47 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=33.3
Q ss_pred HHHHhhhhhhccChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 006281 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHS-PLSYHSILKSLSLSRQINAIDSV 106 (652)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 106 (652)
-+.+.|+.+...+.+.|+..|..+.+...-.++ ..++..+++++...|++..+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655455567777777776544332232 24566677777777777666554
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.45 E-value=27 Score=22.87 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
-.+.-++.+.|++++|.+.++.+.+ +|.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3455566777777777777777766 44443
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.39 E-value=1.5e+02 Score=29.53 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=41.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--cCCCHHHHHHHHHHhhhC
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDAT--TYTSLLEGLC--QETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 534 (652)
..+.+.+++..|.++|+.+.+. +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445889999999999999986 555544 4455555553 567889999999986654
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.20 E-value=31 Score=30.32 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=21.0
Q ss_pred ccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 006281 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148 (652)
Q Consensus 116 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 148 (652)
.|++.+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466666666666666666666666666666543
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.15 E-value=67 Score=23.65 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHhh
Q 006281 552 RRGHFLVATKLLRGLS 567 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~ 567 (652)
..|+.+.|.+++..++
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3444555555555444
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.59 E-value=18 Score=32.10 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=36.2
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+.++.+.+.+++.++++.-+. +...|..+...-.+.|+++.|.+.+++..+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 44567777777777777666554 555666677667777777777777777665
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.48 E-value=2e+02 Score=28.98 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.5
Q ss_pred HhcCcHHHHHH
Q 006281 200 CENAKLGQVLS 210 (652)
Q Consensus 200 ~~~g~~~~a~~ 210 (652)
+..|+.+.+..
T Consensus 76 ~~~g~~~~v~~ 86 (413)
T PHA02875 76 VEEGDVKAVEE 86 (413)
T ss_pred HHCCCHHHHHH
Confidence 34444444333
No 411
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=2.5e+02 Score=30.14 Aligned_cols=255 Identities=9% Similarity=0.071 Sum_probs=127.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTD-----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 449 (652)
....|+...+.+++.-.....-.+. --.+-++.-. ..|..+...+.+.+..+..-. ++.-+.. .-++.-.|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLI--hA~hG~~~~~yL~~~Lk~~~~-e~v~hG~-cLGlGLa~ 442 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLI--HANHGRGITDYLLQQLKTAEN-EVVRHGA-CLGLGLAG 442 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhcc--ccCcCccHHHHHHHHHHhccc-hhhhhhh-hhhccchh
Confidence 3456777778887776554311111 1122333333 344444577777666554322 2222221 12223333
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHH--HHHHHHcCCCHHHH
Q 006281 450 LLRPAKKLWDQMFASGCSGNLKTYN--ILISKFSEVGEIEGALRLFHNMLEKGV-APDATTYTS--LLEGLCQETNLQAA 524 (652)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~--l~~~~~~~g~~~~a 524 (652)
.-..-.++|+.+++.-...+..+-. .+..+++..|... .+.+++|...-. .....+... +.-++..-|+-++|
T Consensus 443 mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 443 MGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhh
Confidence 3444466777766543233333222 1222333333221 233444442110 111112222 22234556777889
Q ss_pred HHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch-hHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 525 FEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-SHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 525 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..+.+++.... +.....-..+++.+|+-.|+.....+++.-...++.+.. -...++-.+.-..+.+......+-+.+.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses 600 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES 600 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhh
Confidence 99999887654 222223355677888889998888888887777544322 2223444444556777777777666654
Q ss_pred -CCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 603 -SPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 603 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+|....-..-.|+-+++..|. .+|..+++-|..
T Consensus 601 ~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 601 YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 332222222224444444554 778888887664
No 412
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.27 E-value=1.4e+02 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHHHcCCC-------HHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch
Q 006281 510 SLLEGLCQETN-------LQAAFEVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574 (652)
Q Consensus 510 ~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 574 (652)
.+.-.|-..|+ ...|.+.|.++....-.| ...+.-.++....+.|+.++|.+.|.++...+....
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 33444545555 334666666655433211 233445566677788999999999999887554433
No 413
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.70 E-value=74 Score=23.42 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 489 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
+.+++..+.+.|+- +..-...+-.+-...|+.+.|.+++.... .|+. .|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 34555666665543 22223323222235567777777777665 5544 5666667776666655443
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.03 E-value=31 Score=20.32 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=9.5
Q ss_pred HHHHHHHhccccHHHHHHH
Q 006281 577 VILLKSLADAREVEMAIEH 595 (652)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~ 595 (652)
..++..+...|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444555555555555555
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.85 E-value=24 Score=32.77 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (652)
..+.|+.++|.++|+.+.. .|..+.....++......++.-+|-++|-+++...|.+...+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4578999999999998877 78888888888888888889999999999999999988655554
No 416
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.51 E-value=90 Score=23.72 Aligned_cols=8 Identities=13% Similarity=-0.051 Sum_probs=2.9
Q ss_pred cCChhhHH
Q 006281 448 EDLLRPAK 455 (652)
Q Consensus 448 ~g~~~~a~ 455 (652)
.|++++|.
T Consensus 52 rG~Yq~Al 59 (115)
T TIGR02508 52 RGDYQSAL 59 (115)
T ss_pred cchHHHHH
Confidence 33333333
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.99 E-value=1.2e+02 Score=26.24 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHhhHHH-----HHHHHHcCCCHHHHHHHHHHhhh
Q 006281 485 EIEGALRLFHNMLEKGVAP--DATTYTS-----LLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p--~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
-.+.|+.+|+.+.+.--.| -...... .+-.|.+.|.+++|.+++++..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3677899998887653333 1222222 33468899999999999998766
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.97 E-value=1.8e+02 Score=27.08 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=6.0
Q ss_pred ChhHHHHHHHHh
Q 006281 63 HHSLALGFFNWA 74 (652)
Q Consensus 63 ~~~~a~~~f~~~ 74 (652)
++..|+...+..
T Consensus 50 dF~aal~tCerg 61 (309)
T PF07163_consen 50 DFQAALETCERG 61 (309)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.42 E-value=98 Score=27.95 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.0
Q ss_pred ccccHHHHHHHHHHHHhcCCCC
Q 006281 585 DAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..++...|+.+++++.+.+|..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4467789999999999998765
No 420
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.30 E-value=1e+02 Score=27.62 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=66.6
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---ccHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCC--CC
Q 006281 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSIL--STFMISLCRRGHFLVATKLLRGLSSDL--GH 572 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 572 (652)
.+.+...-++.|+--|.-...+.+|.+.|.+ ..++. .+...+ ..-+......|+.++|++.+..+...- .+
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3456667777887777777777777777764 33333 344443 334566788999999999888774421 12
Q ss_pred chhHHHHH--H--HHhccccHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006281 573 SDSHVILL--K--SLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614 (652)
Q Consensus 573 ~~~~~~l~--~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (652)
...+..+. . -+.+.|..++|++..+.-...........++.+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~el 144 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEEL 144 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHH
Confidence 22222211 1 125677788888887765554433333444433
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.91 E-value=44 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=7.8
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006281 477 ISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m 496 (652)
|.+|.+.|++++|.++.+++
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444333
No 422
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=52.61 E-value=1.1e+02 Score=31.61 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.....+.-|..+..+-.- ...+.|..++.+|.+.+++..|.+-++++.+...++
T Consensus 566 Lie~ErYqlaV~mckKc~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKCGI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHHHhhcCC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 3333444444444433322 245677788888888888888888888877764433
No 423
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.54 E-value=1.8e+02 Score=26.34 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=49.6
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 473 YNILISKF--SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 473 ~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
|..+++++ ..++++++|++.+-.- .+.|+.. .-++.++...|+.+.|..+++. .+.... +......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~-~~p~l~-s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRA-VGPPLS-SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHh-cCCCCC-CHHHHHHHHHH-
Confidence 33444443 3455666666655221 1222211 1355566666777777777763 222222 22333333333
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh
Q 006281 551 CRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 584 (652)
..++.+.||..+.+..... .....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~-~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDE-LRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchh-hhHHHHHHHHHHHH
Confidence 4556777777666665542 11334444444444
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.16 E-value=49 Score=30.52 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=12.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.++.-|...|++++|.++++.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555553
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.50 E-value=1.3e+02 Score=24.24 Aligned_cols=44 Identities=5% Similarity=-0.113 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (652)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 251 (652)
.+.++|..|..+ +.....+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555555 55555555666666666666666666666553
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.98 E-value=1.3e+02 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 394 (652)
--+..+-++.+..-++.|++......+++|.+.+++..|.++|+-+..+
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3445556666777778888888888888888888888888888887754
No 427
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.66 E-value=1e+02 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=21.8
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+..+..++. |......+...+...|++++|++.+-.+..
T Consensus 12 ~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 12 EAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444444 555556666666677777777666655554
No 428
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.64 E-value=75 Score=27.87 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.|+...|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555544444
No 429
>PRK12798 chemotaxis protein; Reviewed
Probab=49.98 E-value=2.8e+02 Score=27.69 Aligned_cols=187 Identities=10% Similarity=0.000 Sum_probs=105.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH--cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCChh
Q 006281 95 SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI--QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL-ASDGYID 171 (652)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~ 171 (652)
...|++.....++.. +..++. =..|+.+.. -.|+..++.+.+..+......+....|-.|+.+- ....+..
T Consensus 92 lSGGnP~vlr~L~~~----d~~~~~--d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 92 LSGGNPATLRKLLAR----DKLGNF--DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred hcCCCHHHHHHHHHc----CCCChh--hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 367777766655553 322222 222333222 3688999999999998777777777888888765 4456799
Q ss_pred hHHHHHHHHHhC--CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC---CHHHHH
Q 006281 172 NALKMFDEMSHR--GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK---RVEEAF 246 (652)
Q Consensus 172 ~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 246 (652)
.|+.+|+...-. |--........-+-.....|+.++...+-.+...+....|.-...+..+.....+.+ ..+.-.
T Consensus 166 ~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~ 245 (421)
T PRK12798 166 TALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLV 245 (421)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHH
Confidence 999999987543 211112222233334567788888877777766662222222222333333333333 233333
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
.++..|... --...|-.+.+.-.-.|+.+-|.-.-++....
T Consensus 246 ~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 246 EILSFMDPE---RQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 333333211 12346777777777777777666655555443
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=2.2e+02 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 006281 441 LMEACCREDLLRPAKKLWD 459 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~ 459 (652)
++..+.+.|.+.+|+.+..
T Consensus 131 li~l~y~~~~YsdalalIn 149 (421)
T COG5159 131 LIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHhcccHHHHHHHHH
Confidence 4455556666666655544
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.18 E-value=95 Score=23.24 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=11.8
Q ss_pred HHHHcCCCHHHHHHHHHHhhh
Q 006281 513 EGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~ 533 (652)
......|++++|.+.++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666665544
No 432
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.98 E-value=4.6e+02 Score=29.98 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC--CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET--NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
+++....+.+....+.... ...-+..++.+|.+.+ ++++|+++..++.+.+...-......++ -+-++-+
T Consensus 792 ~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~-------fLvDvn~ 863 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLC-------FLVDVNK 863 (928)
T ss_pred cHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhe-------eeccHHH
Confidence 3444444444443332111 2334556777777777 7888888888776552211111111110 0112222
Q ss_pred HHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
+|+.+.- ..+.-.+++-|...+.+.++=+-.++++.+..+.. .-| .+-...++|++|++.+.+
T Consensus 864 Ly~~ALG---~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~--rry----~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 864 LYDVALG---TYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLY--RRY----KIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHhh---hcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhh--eee----eHhhhhCCHHHHHHHHHh
Confidence 2222222 11122345555566667777777777776664322 111 123456778888776654
No 433
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.68 E-value=1.4e+02 Score=28.57 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKG---VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
.|.-=.+-|.+.+++..|...|.+-+... ...+.+.|+.-..+-...|++..|+.=...++..++. ....|-.-..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhH
Confidence 44445556777777788888777766432 1223455665555555667777777777766666655 3444444555
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 006281 549 SLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~ 568 (652)
++....++++|..+.++...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 66667777777777766544
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.50 E-value=2.3e+02 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006281 333 VLNALIGSVSSIDPRSAIVFFNFMIE 358 (652)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~m~~ 358 (652)
.-.+++.+++.++...|...++...+
T Consensus 144 i~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 144 IARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555666666666665555443
No 435
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.19 E-value=46 Score=18.20 Aligned_cols=13 Identities=8% Similarity=0.511 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhh
Q 006281 521 LQAAFEVFNKSVN 533 (652)
Q Consensus 521 ~~~a~~~~~~~~~ 533 (652)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 436
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.04 E-value=2.3e+02 Score=26.20 Aligned_cols=124 Identities=10% Similarity=0.024 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ--ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (652)
+.+......|+++-+..+.. .|-..|.-..=..+.+ ..+..+-++.++++.+.+++ +-.+|..--......|+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~l--NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRL--NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HhccccCHHHHHHHHHHHHh--CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcc
Confidence 34455666777777777654 3333222111111111 12455666777777766665 5556555444445555655
Q ss_pred -HHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 558 -VATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 558 -~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.-+++.+.|.. +..+--+|..--+++..-+.++.=+.+..++.+.+.-+
T Consensus 130 ~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred cchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 55666666665 44555666677777777777777777777777765544
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=2.4e+02 Score=26.39 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=38.0
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHhh----CCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006281 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRI----RECKPDFIAYRI-VAEEFKLMGSVFEREVVLKKKRKLGV 292 (652)
Q Consensus 225 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~ 292 (652)
...++..+...|++-++.+.+.+...+..+ .|.+.|+....+ |.-.|....-.++-++..+.|.+.|.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 345566677888888888888777665543 345555432221 22223333334555666666666553
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.90 E-value=71 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
|-.+++..++++|.+.|+.-+...|.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444443433333
No 439
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.77 E-value=2.2e+02 Score=25.82 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 359 KGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-D-----------YFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
.++.-+..-+..++ +...|+...|...++.-... | -.|.+.....++..|. .+++++|.+++.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 34444444444443 44556666655555443221 1 1234444444444433 24566666666666
Q ss_pred HHcCCCCC
Q 006281 427 KRKGLDPD 434 (652)
Q Consensus 427 ~~~~~~p~ 434 (652)
-+.|..|.
T Consensus 265 w~lgysp~ 272 (333)
T KOG0991|consen 265 WKLGYSPE 272 (333)
T ss_pred HHcCCCHH
Confidence 66665543
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.29 E-value=94 Score=25.76 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
+.+.+.+.|++++.. -..+++.+...++.-.|.++++++.+.++..+..+...-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455556655443 33455566666565677777777776666665555444555555555
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.88 E-value=94 Score=23.27 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=17.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.++......|++++|++.++++.+.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666677777777777776654
No 442
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.87 E-value=2.1e+02 Score=25.79 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006281 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG---NLKTYN--ILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507 (652)
Q Consensus 433 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 507 (652)
+...-+|.|+--|.-...+.+|.+.|.. +.|+.| +..+++ .-|......|+.++|.+..+.+...-+.-|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 3344445555444444444445444443 223333 222222 334445666666666666665543222223322
Q ss_pred HHHHHHH----HHcCCCHHHHHHHHHH
Q 006281 508 YTSLLEG----LCQETNLQAAFEVFNK 530 (652)
Q Consensus 508 ~~~l~~~----~~~~g~~~~a~~~~~~ 530 (652)
+-.|... ..+.|..++|+++++.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222211 2345555666655554
No 443
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.44 E-value=1.7e+02 Score=30.69 Aligned_cols=86 Identities=12% Similarity=0.168 Sum_probs=51.8
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLA------RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+..++..+.+.|+..+..-+. | ......+.-+|....++|.|.++++++.+ +|..+-.......+....|+
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~-D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIIS-DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456677777777754442221 1 23355566666777777777777777766 44444444455555666677
Q ss_pred HHHHHHHHHHHHhc
Q 006281 589 VEMAIEHIKWIQES 602 (652)
Q Consensus 589 ~~~A~~~~~~~~~~ 602 (652)
.++|+..+..+...
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 77777777666554
No 444
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=4.6e+02 Score=29.02 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=31.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 231 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 286 (652)
+....+...|+.+....+-.-|.+ |..++..+.+.+.+++|++++..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566777766665544432 56677788888888888887754
No 445
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=2.5e+02 Score=25.95 Aligned_cols=203 Identities=10% Similarity=0.050 Sum_probs=101.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HH
Q 006281 412 TSGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE-GA 489 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A 489 (652)
+......|+++..+.+..+.. -++-.|...+--.. ..++.+-.+.++++.+.. +.|-..|..-=...-..|++. .=
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccch
Confidence 344556677777766655211 01122222221111 123555566666666654 455555543333333445555 55
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh-cCCHH-----HHHHHH
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-RGHFL-----VATKLL 563 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~-----~A~~~~ 563 (652)
+++.+.|....-+ +-..|..---++..-++++.-+.+..++++.++. +.+.|+.-.-.... .|-.+ .-+.+.
T Consensus 133 Lef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 133 LEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 6677777764333 5555555555555666788878888888877766 55555432222222 22222 222233
Q ss_pred H-HhhhCCCCchhHHHHHHHHhc-cc--cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 564 R-GLSSDLGHSDSHVILLKSLAD-AR--EVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 564 ~-~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
. .+.-.|.+.++|+-|...+.. .| ...+.......+...-|...+.....+++.|
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 3 333366677778777766664 44 1233444444444333333344444455555
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.44 E-value=2.7e+02 Score=26.35 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555555555555555555666665554
No 447
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=44.72 E-value=1.6e+02 Score=23.61 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=33.3
Q ss_pred cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHh
Q 006281 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121 (652)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (652)
.+|..|..++.+....+ .+...++.+....-.-.+.++..++....-.|....
T Consensus 3 nNp~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl 55 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL 55 (126)
T ss_pred CcHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH
Confidence 45666676666664332 166667777777777777777777776654444433
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=2.9e+02 Score=26.42 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH----h
Q 006281 436 SFYNSLMEACCREDLLRPAKKLWDQMFA----SGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLEKGVAPDA----T 506 (652)
Q Consensus 436 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 506 (652)
..+......||+.|+.+.|.+.+....+ .|.+.|+..+.+-+.. |..+.-+.+-++..+.+.+.|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888887765544 3667777665544433 33344445555555666665543332 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
+|..+- |....++.+|-.+|-+.+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 343332 23446788888888776653
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.51 E-value=1.4e+02 Score=27.22 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMF 462 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~ 462 (652)
++....+.|+++++...++++...+...+..--+.+-.+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455566677777777777777776655565555655555532 233344444444443
No 450
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.84 E-value=4.9e+02 Score=28.85 Aligned_cols=224 Identities=14% Similarity=0.042 Sum_probs=114.2
Q ss_pred HccCCHHHHHHHHHHHHcCCCCCCHH-------HHHHHHH--HHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006281 307 IVERRICEAKELGEVIVSGKFTIDDD-------VLNALIG--SVSSIDPRSAIVFFNFMIEK----GRVPTLSTLSNLSK 373 (652)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~--~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~ 373 (652)
....++++|..+.+++...-..++.. .++++-. ...++++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44567777777766655433222211 2444433 35567888888877766543 23344556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHH---HHHHHH--HHHHhcCC--HHHHHHHHHHHHHcC--CC----CCHHHHHH
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDME---SYNVMV--SFLCTSGR--LREAYGVIQEMKRKG--LD----PDVSFYNS 440 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~g~--~~~a~~~~~~~~~~~--~~----p~~~~~~~ 440 (652)
+..-.|+++.|..+.....+..-.-+.. .|..+. ..+...|+ ..+....|....... -+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7788899999888877665431111322 333332 23445563 223333333322210 01 11234444
Q ss_pred HHHHHHhc-CChhhHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhhHHHHHH
Q 006281 441 LMEACCRE-DLLRPAKKLWDQMFASGCSGNLKTY--NILISKFSEVGEIEGALRLFHNMLEKGVAP----DATTYTSLLE 513 (652)
Q Consensus 441 ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~ 513 (652)
++.++.+. +...++..-++-.......|-.... ..|+..+...|+.++|...++++......+ +-.+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555442 1222222222222222212222222 367778888999999999998887643332 2222222222
Q ss_pred H--HHcCCCHHHHHHHHHH
Q 006281 514 G--LCQETNLQAAFEVFNK 530 (652)
Q Consensus 514 ~--~~~~g~~~~a~~~~~~ 530 (652)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 3357888887777665
No 451
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=1.4e+02 Score=31.25 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDA------TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
||.--+ ..+..++..+.+.|..-... +..|. .....|.-+|.+..+.+.|.++++++-+.++. ++-.-...
T Consensus 358 Wn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~ 434 (872)
T KOG4814|consen 358 WNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLM 434 (872)
T ss_pred HHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHH
Confidence 443333 33567888888888765542 22222 23445666677888999999999999887765 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 006281 547 MISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+....|.-++|+..+..+..
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHh
Confidence 6777888999999999888766
No 452
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.46 E-value=1.1e+02 Score=33.26 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=68.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
...|+.+.|++.-..+- +..+|..|.......|+.+-|.-.|++.. .|..|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k---------nfekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK---------NFEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh---------hhhheeEEEEEeCCHHHHH
Confidence 34566666666544432 55667777777777777777777666432 2333444555667777666
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccc
Q 006281 561 KLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 640 (652)
++.+.+..... ... ........|++++-.++++..-.. +..|- .-..+|.-++|.++.++...++.+
T Consensus 719 Km~~iae~r~D-~~~---~~qnalYl~dv~ervkIl~n~g~~-----~layl----ta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 719 KMMKIAEIRND-ATG---QFQNALYLGDVKERVKILENGGQL-----PLAYL----TAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHHhhhh-hHH---HHHHHHHhccHHHHHHHHHhcCcc-----cHHHH----HHhhcCcHHHHHHHHHhhccccCC
Confidence 66555433211 111 111112245555555555433221 11111 123466667777777777665443
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.24 E-value=26 Score=34.86 Aligned_cols=89 Identities=13% Similarity=-0.028 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
-+..+...++++.|..++.++.+ +|..+..+..-+.++.+.+++..|+.=..++.+.+|......+. -+.+..+.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r-rg~a~m~l~~~ 88 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR-RGTAVMALGEF 88 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee-ccHHHHhHHHH
Confidence 34556778899999999999988 66666666666788999999999999999999999875333222 33445556666
Q ss_pred chHHHHHHHHH
Q 006281 625 EPILLLLHALQ 635 (652)
Q Consensus 625 ~~a~~~~~~~~ 635 (652)
.+|...++...
T Consensus 89 ~~A~~~l~~~~ 99 (476)
T KOG0376|consen 89 KKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHhh
Confidence 77766666443
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.96 E-value=3e+02 Score=26.06 Aligned_cols=141 Identities=12% Similarity=0.140 Sum_probs=70.0
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCC-----------
Q 006281 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK----------- 133 (652)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------- 133 (652)
..|+++|+.-.... ..+.++.++-+.+.-+...++| ||+..+-......+...|
T Consensus 184 ~F~~~lFk~~~~Ek-------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q 248 (412)
T KOG2297|consen 184 SFAVKLFKEWLVEK-------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQ 248 (412)
T ss_pred HHHHHHHHHHHhhc-------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHH
Confidence 45677776543322 2567777775555544444433 555555544444444443
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHH-HHHHhCCCccCc----ccHHHHHHHHHhcCcHH-H
Q 006281 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF-DEMSHRGVEFST----IGFGVFIWKFCENAKLG-Q 207 (652)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~-~ 207 (652)
....|.+-++. .|..-..+...+++..... ++|.+.++ |+. ..|..++.+--.+.+-+ .
T Consensus 249 ~~~~a~kElq~--------------~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelv 313 (412)
T KOG2297|consen 249 QSEGARKELQK--------------ELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELV 313 (412)
T ss_pred HHHHHHHHHHH--------------HHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHH
Confidence 22222222222 2222233334455555444 45555554 444 35666665544332221 2
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHH
Q 006281 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (652)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 246 (652)
|.+.++.+ ..|.-|+.+++..|+.+-.+
T Consensus 314 a~qalrhl-----------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 314 AEQALRHL-----------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHH-----------HhhhHHHHHHhcCChHHHHH
Confidence 33333333 34556888899999877554
No 455
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.93 E-value=5.9e+02 Score=29.18 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=22.3
Q ss_pred cChhHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 006281 62 THHSLALGFFNWASQQPN--FTHSPLSYHSILKSLSL-SRQINAIDSVLKQVKV 112 (652)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~--~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 112 (652)
.+...|+.+.+.-+-..+ +.+++..|-.-+..+.+ -++.+..-.++..+.+
T Consensus 708 ~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ 761 (928)
T PF04762_consen 708 KDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRN 761 (928)
T ss_pred ccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 445555555443322222 23455555554544443 3344444444444443
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.82 E-value=4.6e+02 Score=28.37 Aligned_cols=19 Identities=0% Similarity=-0.185 Sum_probs=13.6
Q ss_pred cCCCCchHHHHHHHHHHcc
Q 006281 620 SSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 620 ~~g~~~~a~~~~~~~~~~g 638 (652)
-.+++.+|.+.-+.|-+..
T Consensus 378 LAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred hccCHHHHHHHHHHHhccC
Confidence 4578888888877776653
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.27 E-value=2.3e+02 Score=29.98 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 405 VMVSFLCTSGRLREAYGVIQEMKRKG--LDPDVSFYNSLMEACCREDLLR------PAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 405 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
++..+|..+|++-.+.++++.+...+ -+.-...||..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887542 2223456788888888888754 3344444433 45677788877
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 006281 477 ISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+++-..--+-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776544322222333444444
No 458
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.72 E-value=2.2e+02 Score=30.11 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCC--CccCcccHHHHHHHHHhcCcHH
Q 006281 159 SLLAVLASDGYIDNALKMFDEMSHRG--VEFSTIGFGVFIWKFCENAKLG 206 (652)
Q Consensus 159 ~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~ 206 (652)
+|+.+|..+|++..+.++++.+...+ -+.=...||..|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 78888999999999999888887543 2223456677777777777653
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.31 E-value=3.5e+02 Score=26.09 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHHHhcc-CCCCCchhhH--HHHHHHHHccCCHHHHHHHHHHHhh-----CCCCcCHH-HHHHHHHHHHh
Q 006281 203 AKLGQVLSMLDEVRKRE-NSMINGSVIA--VLIIHGFCKGKRVEEAFKVLDELRI-----RECKPDFI-AYRIVAEEFKL 273 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~-~~~~ll~~~~~ 273 (652)
++.++|+++++++...- ....++.+.| ..+...+...||..++.+.+++..+ .++.|++. .|..+-.-|.+
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 45555555555555431 0111223333 3455666677888888888777665 46666554 34444443333
Q ss_pred -cCCHH
Q 006281 274 -MGSVF 278 (652)
Q Consensus 274 -~g~~~ 278 (652)
.|++.
T Consensus 169 ~~~d~a 174 (380)
T KOG2908|consen 169 KIGDFA 174 (380)
T ss_pred HHHhHH
Confidence 34444
No 460
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.13 E-value=1.7e+02 Score=28.29 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 556 FLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 556 ~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.++...++..+...-+ .+..|.+++......|.++..+.+|+++...+..+...+-+.+++++.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455556664444322 334677888888888888888999998888888877777776777665
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.09 E-value=1.5e+02 Score=21.81 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
++|+.....|+..|+.+|..++..+.-+=......++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777776666655556666666666543
No 462
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.88 E-value=2.9e+02 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Q 006281 175 KMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (652)
Q Consensus 175 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 216 (652)
++.+-....++.-+...+..++ +...||...|+..++.-.
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTV 219 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHh
Confidence 3333333444444444444433 445566666665555444
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.73 E-value=1.7e+02 Score=22.22 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=16.6
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
.++++...+....+.....|...|.+.|+.+.|.+-|+.
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 333333333333333344444444455555544444443
No 464
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.58 E-value=1.4e+02 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=11.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCC
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGV 185 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~ 185 (652)
++..+...++.-.|.++++++.+.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 34444444444444455554444443
No 465
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.30 E-value=1.8e+02 Score=22.57 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 122 YRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 122 ~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666544
No 466
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.21 E-value=72 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 502 (652)
|+.-|....+.||+++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344455555555555555555555555444
No 467
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.12 E-value=3.4e+02 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.510 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346888888888888876554
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.56 E-value=4.1e+02 Score=26.40 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
...+.-+.+.|..+|+++.|++.+.+.++- ..+..+..|-.+|..-.-.|+|........+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 344556888899999999999999986543 11223456667777777788888887777766553
No 469
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=38.49 E-value=4.2e+02 Score=26.49 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH---HH----H-HhcCCHHHHHHHHHHhhh--
Q 006281 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM---IS----L-CRRGHFLVATKLLRGLSS-- 568 (652)
Q Consensus 499 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~----~-~~~g~~~~A~~~~~~~~~-- 568 (652)
..+.||..+.+-+...++..-..+-...+|+-.++..-+ -...+-.++ .+ + .+...-++++++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 467888888777777666666677777777765555422 111122221 11 1 134456788888888876
Q ss_pred CCCCchhHHHHHHHHh
Q 006281 569 DLGHSDSHVILLKSLA 584 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~ 584 (652)
+-.+.+.+..|+.-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 3445566666766664
No 470
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=38.23 E-value=43 Score=21.09 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=27.5
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006281 71 FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVK 111 (652)
Q Consensus 71 f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (652)
.+++.+...|+.....+..+..-+-..+....+..+++++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45566677777777788888777777777766777766654
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.21 E-value=4.9e+02 Score=27.23 Aligned_cols=155 Identities=14% Similarity=0.022 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHH---c----CCCCC----
Q 006281 413 SGRLREAYGVIQEMKRKGLDP------------DVSFYNSLMEACCREDLLRPAKKLWDQMFA---S----GCSGN---- 469 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~----~~~~~---- 469 (652)
...+++|...|.-..... .| .+.+.-.+...|...|+.+.|..++++.+= . .+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 445777777777655441 22 123344455567777777777777665431 1 12111
Q ss_pred ---------HHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-cCCCHHHHHHHHHHhhhCC-
Q 006281 470 ---------LKTYNI---LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC-QETNLQAAFEVFNKSVNHD- 535 (652)
Q Consensus 470 ---------~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~- 535 (652)
..-|-+ -+..+.+.|-+..|+++.+-+.+....-|+.....+|+.|+ +..+++-.++++++....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 111111 23344556666666666666665443334555555565554 4555666666665543222
Q ss_pred --CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhh
Q 006281 536 --VMLARSILSTFMISLCRRGH---FLVATKLLRGLSS 568 (652)
Q Consensus 536 --~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 568 (652)
.-|+-..-.+++..|.+... -..|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 22343333444444444433 2334444444433
No 472
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.19 E-value=3.9e+02 Score=26.06 Aligned_cols=85 Identities=8% Similarity=0.025 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhhccChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006281 49 PSLVARVINPYLLTHHSLALGFFNWASQQPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (652)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (652)
+..+..+|..+-.+.+.++.-++-.+.-... -.|++.+.-.++.-|....+-+....+-..+. .+++.+-.
T Consensus 39 ~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f~--------~lc~~l~~ 110 (422)
T KOG2582|consen 39 SSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEIFF--------PLCHDLTE 110 (422)
T ss_pred cchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHHH--------HHHHHHHH
Confidence 3445556665555556666666665543322 25788888788888877776554433322221 13444555
Q ss_pred HHHcCCChhHHHHH
Q 006281 128 SLIQGKNTQKAFSV 141 (652)
Q Consensus 128 ~~~~~g~~~~a~~~ 141 (652)
++.+.+.....+++
T Consensus 111 ~~~~~~~p~~gi~i 124 (422)
T KOG2582|consen 111 AVVKKNKPLRGIRI 124 (422)
T ss_pred HHHhcCCccccchH
Confidence 55555544443333
No 473
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.17 E-value=1.6e+02 Score=27.20 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNMLE----KG-VAPDATTYTSLLEGLCQETNLQAAFEVF 528 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (652)
+...|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33444555555555555555431 11 1122233334444444455554444433
No 474
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.11 E-value=3.8e+02 Score=31.13 Aligned_cols=154 Identities=15% Similarity=0.001 Sum_probs=91.7
Q ss_pred HHHhcCCHHHHHH------HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhh-------hCCCCccHHHHHH
Q 006281 479 KFSEVGEIEGALR------LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV-------NHDVMLARSILST 545 (652)
Q Consensus 479 ~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 545 (652)
.....|.+.+|.+ ++...-..-..+....|..+...+.+.|+.++|...-.+.. ..+..-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556666655 44422221123355677888888888999988887765532 2222223444666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh---------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC-----CC--CcHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS---------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS-----PT--MLQE 609 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~--~~~~ 609 (652)
+.......++...|...+.+... .|+...+...+...+...++++.|++.++.+.... |. ....
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 66666667777777776665532 12222333445555556688899999888887642 11 2344
Q ss_pred HHHHHHHHhhcCCCCchHHHHHH
Q 006281 610 ISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
.++.+...+...+++..|.+..+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 45667777777777777665554
No 475
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.03 E-value=5.1e+02 Score=28.65 Aligned_cols=118 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCHHHHHHhhhhhhcc-ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------
Q 006281 45 DSLSPSLVARVINPYLLT-HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--------- 114 (652)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 114 (652)
..+.+.++.+...-..+. ......+++++.....++..+......+.+.. .|+...++.++++....+
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHH
Q ss_pred ----CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006281 115 ----ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (652)
Q Consensus 115 ----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 166 (652)
...+......++..+.. ++..+++.+++++...|.. -.....-|+..+.+
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~-~~~~l~dLl~~l~~ 291 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAA-GDGPEILAVADEMALRSLS-FSTALQDLASLLHR 291 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
No 476
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=37.78 E-value=2e+02 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
.+++.+.+.....|..-..+++ ++.-+...-.|+++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~-la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFE-LASQLGSVKYYKKAVK 99 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHH-HHHHhhhHHHHHHHHH
Confidence 4456666666666655333333 4443333334444443
No 477
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.50 E-value=2.4e+02 Score=27.03 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGC---SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGL 515 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 515 (652)
-=.+-|.+..++..|...|.+-++..+ ..+.+.|+.-..+-...|++..|+.=....+.. +|+. ..|-.=..++
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAKCL 163 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhHHH
Confidence 334568899999999999998887632 234567777777777788998888877777754 4443 3344444455
Q ss_pred HcCCCHHHHHHHHHHh
Q 006281 516 CQETNLQAAFEVFNKS 531 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~ 531 (652)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6667777777776654
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.08 E-value=1.7e+02 Score=21.55 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
++|+-....|+..|+.+|..+++.+.-.=-.+...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666667777777777777666665566666666666643
No 479
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.73 E-value=46 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=10.4
Q ss_pred CChhhHHHHHHHHHHcCCCCC
Q 006281 449 DLLRPAKKLWDQMFASGCSGN 469 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~ 469 (652)
|.-.+|..+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344445555555555554444
No 480
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.41 E-value=81 Score=29.63 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 257 (652)
...|+..|....+.||+++|++++++..+.|+
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444555555555555555555555555544
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.36 E-value=4.4e+02 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEM 180 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m 180 (652)
.+.-+...|..+|+++.|++.|.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhh
Confidence 4445555555555555555555553
No 482
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.22 E-value=2.1e+02 Score=27.07 Aligned_cols=73 Identities=10% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH----------ccCCHH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC----------KGKRVE 243 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~ 243 (652)
.++|+.+...++.|.-+.+.-+.-.+.+.=.+..++.+++.+... . .-+..|+..|+ -.|++.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~------~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-P------QRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-h------hhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 345555666666666655555544555555666666666666554 0 01222222222 257777
Q ss_pred HHHHHHHHHh
Q 006281 244 EAFKVLDELR 253 (652)
Q Consensus 244 ~A~~~~~~m~ 253 (652)
...++++.-.
T Consensus 336 ~nmkLLQ~yp 345 (370)
T KOG4567|consen 336 VNMKLLQNYP 345 (370)
T ss_pred HHHHHHhcCC
Confidence 7777777643
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.91 E-value=4.5e+02 Score=26.09 Aligned_cols=52 Identities=15% Similarity=-0.028 Sum_probs=31.4
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHH----HHHHHHHHHh--cCCHHHHHHHHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKT----YNILISKFSE--VGEIEGALRLFHN 495 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~--~g~~~~A~~~~~~ 495 (652)
.+.+.+++..|.++|+++.....++.... |..+..+|.. .-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45567788888888888877654444332 3334444432 4466677777765
No 484
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=35.91 E-value=1.7e+02 Score=27.11 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..+=..+.+.++++.|.+..++... +|.++..+.--+.+|.+.|-+.-|++-++...+.-|+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3444557777888888888887766 566666677777788888888888888888777777664
No 485
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.48 E-value=6.5e+02 Score=27.81 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=61.2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCCHHHHHHHHHH---HHcCCCCCCH
Q 006281 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEV---IVSGKFTIDD 331 (652)
Q Consensus 257 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~ 331 (652)
+..+......++... .|+..+++.+++.+..... ..+.... ..+.+.+.+.. ..+..-....
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~I-----------t~~~~~e~l~~~~~~ydk~gd~hy 259 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDI-----------TLAIAEESIQQRAVLYDKEGDAHF 259 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceec-----------cHHHHHHHHHHhhhhcccCCCCCH
Confidence 444555555555543 7888888888877543210 0000000 11112222221 1111122455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379 (652)
Q Consensus 332 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 379 (652)
....+++..+..+|++.|+..+.+|.+.|..|....-..++.+.-.-|
T Consensus 260 d~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 260 DTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 667778888888899999999999999988776555444444443334
No 486
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.46 E-value=2.2e+02 Score=22.08 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (652)
....++|..+.+-+...+.. ....-.+-+..+.+.|++++| +..-.... .||...|-+|-.. +.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~-~pdL~p~~AL~a~--klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHC-YPDLEPWAALCAW--KLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHHH--HCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCC-CccHHHHHHHHHH--hhccHHHHHHH
Q ss_pred HHHHHHCC
Q 006281 493 FHNMLEKG 500 (652)
Q Consensus 493 ~~~m~~~~ 500 (652)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
No 487
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.43 E-value=4.3e+02 Score=25.48 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
-++++..++++....+. |.+......|.++.- .-+|.....+|+-.....+.|-+..-. .-+..+.--.+.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNR--AVAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNR--AVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehH--HHHHHHhhhHHh
Confidence 34566666666665544 666666666655532 235666677777655555443322222 223333344566
Q ss_pred HHHHHHHhhhCCCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 559 ATKLLRGLSSDLGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 559 A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
++.+++.+..++... ..+..-+..+.+.|+.++|...|+++....++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 666666665543322 23335666777788888888888887777665533
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.20 E-value=3e+02 Score=26.63 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
+++..+++.+++. -|+. .-|-.++......|.++.++.+|++++..|..|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555555554 3443 3455566666667777777777777777777776665555555543
No 489
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.82 E-value=58 Score=29.11 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 549 SLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
...+.|+.+.|.+++.++.. -|.....|..++....+.|+.+.|.+.|++..+.+|....
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45678899999999998887 5667778888999889999999999999999999998743
No 490
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.74 E-value=1.2e+02 Score=21.52 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL 375 (652)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 375 (652)
...+..+...+|.+.+.+++++..+.|..|.......+..+.
T Consensus 5 ~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 5 IERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445556666677777777777777777666655555554443
No 491
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=5e+02 Score=25.80 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHHHHHHH--HhcCChhhHHHHHHHHHHcCCCCCHHHHHHH--------HHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 006281 435 VSFYNSLMEAC--CREDLLRPAKKLWDQMFASGCSGNLKTYNIL--------ISKFSEVGEIEGALRLFHNMLEK-GVAP 503 (652)
Q Consensus 435 ~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~g~~~~A~~~~~~m~~~-~~~p 503 (652)
...|..++-.+ ...+++.+|..+-+.....-..-|..++..+ -..|-..|+...-...+...... .+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34444444333 2346667776666655543222333333322 22333444444444444333321 1111
Q ss_pred C----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 504 D----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 504 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
| ....+.|++.|...+.++.|..+..+..-..-..+ ...+..+...-.-.+++..|.+.+-.+..
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 1 23455566666666666666666554321111111 11122233334445666666666665554
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.70 E-value=3.9e+02 Score=24.43 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=19.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006281 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164 (652)
Q Consensus 125 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 164 (652)
+++.+-+.|+++++.+.++++...+...+..-.|.|-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444555444444444
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.60 E-value=1e+02 Score=21.22 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 430 (652)
..++.++..+++..-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444443
No 494
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.58 E-value=3.1e+02 Score=30.78 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+++.+++.|.++.|.++-+...
T Consensus 778 wlq~L~~vg~~e~Ai~iAEKY~ 799 (1128)
T KOG4121|consen 778 WLQVLCKVGQYEQAIQIAEKYK 799 (1128)
T ss_pred HHHHHHhcchHHHHHHHHHHhh
Confidence 4455555566666555555443
No 495
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.26 E-value=1.3e+02 Score=28.30 Aligned_cols=74 Identities=4% Similarity=0.030 Sum_probs=40.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST-FMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVI 578 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 578 (652)
|+..|...+.-..+.|.+.+...+|.+++...+. +...|-. ...-+...++++.+..++.+... ++.+|..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4445555554444555666666666666665554 5555433 22334556666666666666554 4455555543
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.99 E-value=2.9e+02 Score=23.67 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcC
Q 006281 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203 (652)
Q Consensus 159 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 203 (652)
.++..+...++.-.|.++++.+.+.+..++..|.-..|..+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 444444444555566666666666655555554444444555444
No 497
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.80 E-value=5e+02 Score=25.39 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHH
Q 006281 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPD--VSFYN 439 (652)
Q Consensus 363 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~ 439 (652)
|+..+.-.++.-|....+.+.....-..+. .+++.+-.++.+.+.+...+.+..+....- ..+. .....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~--------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~ 144 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFF--------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHA 144 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHH--------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHH
Confidence 555665556655655555333222111111 145556666666666555444444333221 1111 12233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc------CCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFAS------GCSGNLKTYNILI--SKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~ 498 (652)
-++..|.+.+++..+...++.-... ..+|.....-.+- ..|...++++.|+.+|...+-
T Consensus 145 ~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3455566666665554444322111 1111111100000 113345678888887777663
No 498
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.59 E-value=1.1e+02 Score=18.36 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=18.7
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.+..|+..-...++++.|++=++++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556667777777777777776666543
No 499
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.53 E-value=2e+02 Score=24.56 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCCh
Q 006281 77 QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT 135 (652)
Q Consensus 77 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 135 (652)
..|.+.+..=. .++..+......-.|.++++.+.+.+...+..|-...|..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44555554433 44455555555666777777777666555555555555566555543
No 500
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.51 E-value=7.2e+02 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccC
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 188 (652)
....|+.++.+ ++...++.+++++...|+.+.
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 34455555544 778888888888888876443
Done!