Query 006281
Match_columns 652
No_of_seqs 685 out of 3734
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 20:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.2E-41 1.8E-45 357.2 41.2 489 82-619 82-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6.2E-44 345.4 39.0 506 94-638 63-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-27 3.6E-32 239.9 46.7 379 198-623 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-27 2.2E-31 234.2 45.9 216 367-587 171-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.8E-34 257.3 24.0 204 349-552 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.8E-34 257.4 22.1 212 246-482 10-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.1E-25 1.7E-29 229.5 35.2 260 343-607 202-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 7.7E-24 2.6E-28 220.5 39.6 448 154-638 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.3E-22 7.8E-27 205.5 42.0 346 222-633 22-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 8.3E-24 2.8E-28 221.6 30.1 433 154-606 25-495 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.7E-22 9.3E-27 205.0 38.9 369 190-627 27-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.1E-22 1.1E-26 209.6 36.9 429 119-568 25-490 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.5E-23 171.6 39.7 316 260-617 2-349 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 4.1E-23 171.9 37.5 291 341-637 14-335 (359)
15 3hym_B Cell division cycle pro 99.9 7.9E-19 2.7E-23 171.1 32.4 276 344-625 36-322 (330)
16 2ooe_A Cleavage stimulation fa 99.9 3E-17 1E-21 170.8 45.0 182 453-637 304-492 (530)
17 3hym_B Cell division cycle pro 99.8 1.2E-18 4.2E-23 169.6 30.5 270 362-637 19-299 (330)
18 2xm6_A Protein corresponding t 99.8 4.9E-16 1.7E-20 159.9 49.9 241 346-605 167-435 (490)
19 1xi4_A Clathrin heavy chain; a 99.8 3.4E-15 1.2E-19 160.3 56.9 434 68-564 968-1440(1630)
20 2xm6_A Protein corresponding t 99.8 6.3E-16 2.2E-20 159.0 49.9 223 366-605 220-470 (490)
21 1fch_A Peroxisomal targeting s 99.8 6E-19 2E-23 174.9 24.6 267 365-635 64-357 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 8.4E-15 2.9E-19 157.3 56.8 524 41-637 977-1560(1630)
23 4eqf_A PEX5-related protein; a 99.8 1.4E-18 4.9E-23 171.9 23.4 265 365-633 65-352 (365)
24 1fch_A Peroxisomal targeting s 99.8 6.7E-18 2.3E-22 167.3 25.2 232 364-600 97-357 (368)
25 3cv0_A Peroxisome targeting si 99.8 1.4E-17 4.7E-22 162.0 26.6 263 368-635 24-313 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.8E-22 157.0 24.6 253 340-607 9-269 (291)
27 2ooe_A Cleavage stimulation fa 99.8 8.6E-15 2.9E-19 152.2 46.6 423 83-568 12-491 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 4.4E-17 1.5E-21 154.2 26.1 255 373-638 7-265 (291)
29 4g1t_A Interferon-induced prot 99.8 4.7E-16 1.6E-20 159.7 35.6 381 226-637 51-459 (472)
30 4eqf_A PEX5-related protein; a 99.8 6.4E-18 2.2E-22 167.2 20.4 235 399-638 64-311 (365)
31 1b89_A Protein (clathrin heavy 99.8 2.3E-16 7.7E-21 152.0 29.1 282 131-491 15-303 (449)
32 3cv0_A Peroxisome targeting si 99.8 1.9E-16 6.6E-21 153.8 25.6 258 339-602 30-315 (327)
33 4g1t_A Interferon-induced prot 99.8 3.9E-15 1.3E-19 152.7 35.8 329 258-607 48-406 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.8E-18 1.6E-22 176.5 12.3 118 400-517 127-248 (1134)
35 1b89_A Protein (clathrin heavy 99.7 4.8E-17 1.7E-21 156.6 18.0 349 202-637 16-385 (449)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.3E-22 172.2 13.4 163 364-531 126-307 (1134)
37 2pl2_A Hypothetical conserved 99.7 5.6E-16 1.9E-20 140.0 21.0 194 436-634 6-211 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.4E-15 4.9E-20 142.0 23.9 224 367-603 7-237 (258)
39 3uq3_A Heat shock protein STI1 99.7 2.7E-15 9.3E-20 140.1 24.9 226 400-638 5-237 (258)
40 2pl2_A Hypothetical conserved 99.7 2.3E-15 8E-20 136.0 21.9 199 398-601 3-213 (217)
41 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.5E-19 142.5 27.6 248 365-618 97-363 (382)
42 1ouv_A Conserved hypothetical 99.7 1.9E-13 6.5E-18 128.7 31.9 220 402-637 8-251 (273)
43 3u4t_A TPR repeat-containing p 99.7 2.4E-14 8.2E-19 134.9 25.3 245 367-616 5-263 (272)
44 2h6f_A Protein farnesyltransfe 99.7 6.5E-15 2.2E-19 143.9 21.6 232 400-637 97-348 (382)
45 3u4t_A TPR repeat-containing p 99.7 1.6E-14 5.4E-19 136.1 22.6 235 401-638 4-251 (272)
46 2q7f_A YRRB protein; TPR, prot 99.7 7.8E-15 2.7E-19 135.6 20.1 208 399-610 22-230 (243)
47 2ho1_A Type 4 fimbrial biogene 99.7 4.2E-14 1.4E-18 131.5 25.2 205 400-607 37-243 (252)
48 2ho1_A Type 4 fimbrial biogene 99.6 6E-14 2.1E-18 130.4 25.4 201 435-638 37-239 (252)
49 2vq2_A PILW, putative fimbrial 99.6 1.2E-13 4.2E-18 125.7 26.6 206 399-607 7-216 (225)
50 1ouv_A Conserved hypothetical 99.6 5.3E-13 1.8E-17 125.6 31.3 227 364-606 5-255 (273)
51 4e6h_A MRNA 3'-END-processing 99.6 1.3E-11 4.3E-16 128.9 44.2 102 136-240 49-153 (679)
52 3e4b_A ALGK; tetratricopeptide 99.6 8.1E-14 2.8E-18 140.9 26.5 378 195-637 9-421 (452)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.5E-14 8.7E-19 132.1 20.2 201 434-638 22-223 (243)
54 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 124.9 25.2 201 434-637 7-211 (225)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-14 7.7E-19 135.3 20.0 243 379-631 19-269 (275)
56 3e4b_A ALGK; tetratricopeptide 99.6 9.8E-14 3.4E-18 140.3 25.6 275 345-639 89-389 (452)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.4E-14 3.2E-18 131.0 22.4 245 344-596 19-269 (275)
58 4e6h_A MRNA 3'-END-processing 99.6 7.1E-11 2.4E-15 123.3 45.2 231 349-583 328-584 (679)
59 4a1s_A PINS, partner of inscut 99.6 5.5E-14 1.9E-18 141.3 18.2 263 373-636 56-371 (411)
60 3vtx_A MAMA; tetratricopeptide 99.6 3.3E-13 1.1E-17 118.5 20.9 168 435-605 5-173 (184)
61 4abn_A Tetratricopeptide repea 99.6 6.6E-14 2.3E-18 142.5 18.1 210 416-631 84-315 (474)
62 3vtx_A MAMA; tetratricopeptide 99.6 4.1E-13 1.4E-17 117.9 20.6 168 468-638 3-171 (184)
63 2ond_A Cleavage stimulation fa 99.5 3.5E-12 1.2E-16 122.1 27.7 219 382-606 33-274 (308)
64 3sf4_A G-protein-signaling mod 99.5 1.4E-13 4.9E-18 137.9 18.4 293 339-631 18-370 (406)
65 3ro2_A PINS homolog, G-protein 99.5 3.1E-13 1.1E-17 131.6 18.1 266 371-637 11-332 (338)
66 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.9E-16 118.6 27.7 216 347-568 33-269 (308)
67 4abn_A Tetratricopeptide repea 99.5 6.8E-13 2.3E-17 135.0 20.1 214 381-599 84-318 (474)
68 3sf4_A G-protein-signaling mod 99.5 6E-13 2.1E-17 133.4 17.6 296 295-590 8-364 (406)
69 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-12 4.4E-17 138.1 20.6 168 467-637 6-174 (723)
70 3ulq_A Response regulator aspa 99.5 6.3E-12 2.2E-16 124.7 24.5 231 406-638 109-369 (383)
71 3ulq_A Response regulator aspa 99.5 2.9E-12 9.9E-17 127.2 21.8 233 371-603 109-369 (383)
72 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.6E-17 131.9 18.7 265 341-606 59-376 (411)
73 3ro2_A PINS homolog, G-protein 99.4 3.3E-12 1.1E-16 124.2 18.5 265 341-605 16-335 (338)
74 3nf1_A KLC 1, kinesin light ch 99.4 6.6E-13 2.3E-17 127.7 13.1 236 401-637 28-307 (311)
75 3nf1_A KLC 1, kinesin light ch 99.4 4.9E-13 1.7E-17 128.6 11.6 241 365-605 27-310 (311)
76 4i17_A Hypothetical protein; T 99.4 3.2E-11 1.1E-15 109.9 22.3 202 398-608 5-215 (228)
77 3as5_A MAMA; tetratricopeptide 99.4 1E-11 3.5E-16 109.0 17.6 164 471-637 9-173 (186)
78 3q15_A PSP28, response regulat 99.4 5.2E-11 1.8E-15 117.8 24.0 227 407-636 108-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.4 1.5E-11 5.3E-16 107.8 17.9 167 437-606 10-177 (186)
80 4i17_A Hypothetical protein; T 99.4 1.5E-11 5.2E-16 112.0 18.5 195 433-637 5-209 (228)
81 3q15_A PSP28, response regulat 99.4 1.6E-10 5.6E-15 114.2 25.4 311 292-603 6-366 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.2E-16 130.6 18.1 165 435-602 9-174 (723)
83 1hz4_A MALT regulatory protein 99.4 2E-10 6.8E-15 113.5 25.7 289 341-637 25-349 (373)
84 1hz4_A MALT regulatory protein 99.3 4.5E-10 1.5E-14 110.9 25.8 298 303-606 21-353 (373)
85 3edt_B KLC 2, kinesin light ch 99.2 6.5E-11 2.2E-15 111.8 14.2 129 507-636 129-280 (283)
86 3mv2_B Coatomer subunit epsilo 99.2 1.3E-09 4.5E-14 100.6 21.8 248 336-607 19-287 (310)
87 3qky_A Outer membrane assembly 99.2 3.4E-10 1.1E-14 105.5 17.5 188 399-607 14-229 (261)
88 4ga2_A E3 SUMO-protein ligase 99.2 3.7E-11 1.3E-15 100.8 9.6 144 476-623 3-149 (150)
89 2pzi_A Probable serine/threoni 99.2 1.1E-10 3.8E-15 124.3 15.0 134 470-606 433-567 (681)
90 1qqe_A Vesicular transport pro 99.2 4E-10 1.4E-14 106.7 17.0 162 445-606 47-232 (292)
91 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.3E-09 4.6E-14 98.6 19.2 188 435-639 4-215 (225)
92 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.5E-14 89.5 16.7 128 474-603 5-133 (136)
93 3mv2_B Coatomer subunit epsilo 99.2 5.7E-09 2E-13 96.3 22.2 243 375-638 23-283 (310)
94 3edt_B KLC 2, kinesin light ch 99.2 5.5E-10 1.9E-14 105.3 16.0 204 399-602 42-281 (283)
95 3qky_A Outer membrane assembly 99.2 9.7E-10 3.3E-14 102.3 17.4 62 576-637 151-224 (261)
96 3dra_A Protein farnesyltransfe 99.2 3.3E-08 1.1E-12 92.4 27.5 227 380-612 48-297 (306)
97 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.7E-14 103.3 17.6 168 467-636 114-283 (287)
98 3urz_A Uncharacterized protein 99.2 7E-10 2.4E-14 99.0 15.4 182 402-606 6-190 (208)
99 1qqe_A Vesicular transport pro 99.1 1.2E-09 4.1E-14 103.4 17.5 212 380-606 32-273 (292)
100 2fo7_A Synthetic consensus TPR 99.1 1.4E-09 4.9E-14 89.2 15.8 130 507-638 3-133 (136)
101 2uy1_A Cleavage stimulation fa 99.1 8.1E-08 2.8E-12 97.4 31.2 100 170-289 11-117 (493)
102 3dra_A Protein farnesyltransfe 99.1 1.2E-08 4.2E-13 95.4 22.8 221 412-637 45-287 (306)
103 3urz_A Uncharacterized protein 99.1 1.3E-09 4.3E-14 97.4 15.3 124 511-637 60-186 (208)
104 2r5s_A Uncharacterized protein 99.1 6.7E-10 2.3E-14 96.2 13.1 162 472-636 8-172 (176)
105 2pzi_A Probable serine/threoni 99.1 8.5E-10 2.9E-14 117.5 16.2 170 411-585 402-580 (681)
106 3rjv_A Putative SEL1 repeat pr 99.1 1.7E-08 6E-13 90.1 21.9 177 418-604 4-199 (212)
107 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.8E-13 91.4 20.4 177 452-640 3-200 (212)
108 2uy1_A Cleavage stimulation fa 99.1 4.4E-07 1.5E-11 92.0 32.8 125 471-601 287-412 (493)
109 4ga2_A E3 SUMO-protein ligase 99.1 5.3E-10 1.8E-14 93.7 9.5 143 443-588 5-149 (150)
110 2vsy_A XCC0866; transferase, g 99.1 2.5E-09 8.6E-14 111.9 16.9 159 448-609 2-164 (568)
111 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.7E-08 5.9E-13 91.2 19.9 187 399-606 3-217 (225)
112 2vsy_A XCC0866; transferase, g 99.0 4.6E-09 1.6E-13 109.9 17.8 164 413-580 2-169 (568)
113 4gco_A Protein STI-1; structur 99.0 8.2E-09 2.8E-13 83.3 14.2 110 506-617 14-124 (126)
114 3qou_A Protein YBBN; thioredox 99.0 6.1E-09 2.1E-13 98.1 15.3 162 435-600 117-282 (287)
115 3gyz_A Chaperone protein IPGC; 99.0 2.4E-09 8.1E-14 89.1 10.4 100 506-606 37-137 (151)
116 2r5s_A Uncharacterized protein 99.0 5E-09 1.7E-13 90.6 11.8 156 441-600 12-171 (176)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.9E-08 1.3E-12 88.1 18.0 127 475-606 11-154 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 2E-08 6.9E-13 95.7 16.9 201 377-605 3-226 (307)
119 3q7a_A Farnesyltransferase alp 98.9 1.2E-06 4.2E-11 82.6 26.8 222 379-605 68-335 (349)
120 2vgx_A Chaperone SYCD; alterna 98.9 5.6E-09 1.9E-13 87.1 9.7 114 491-607 8-123 (148)
121 3gyz_A Chaperone protein IPGC; 98.9 1.6E-08 5.6E-13 84.0 12.1 107 529-637 26-133 (151)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.6E-08 1.2E-12 88.3 15.5 128 507-638 8-151 (213)
123 4f3v_A ESX-1 secretion system 98.9 1.3E-07 4.6E-12 86.1 18.4 198 412-616 18-249 (282)
124 2ifu_A Gamma-SNAP; membrane fu 98.9 6.1E-08 2.1E-12 92.4 16.7 199 378-594 29-253 (307)
125 3q7a_A Farnesyltransferase alp 98.9 2.9E-07 9.9E-12 86.9 20.6 225 409-637 63-331 (349)
126 1a17_A Serine/threonine protei 98.9 4.1E-08 1.4E-12 83.8 13.9 129 507-636 15-145 (166)
127 3u3w_A Transcriptional activat 98.8 5E-07 1.7E-11 85.4 22.4 160 442-601 82-265 (293)
128 2c2l_A CHIP, carboxy terminus 98.8 1.1E-08 3.7E-13 96.0 10.6 194 435-637 4-199 (281)
129 3dss_A Geranylgeranyl transfer 98.8 2.1E-06 7.2E-11 80.7 26.0 182 452-637 91-304 (331)
130 3u3w_A Transcriptional activat 98.8 3.4E-07 1.2E-11 86.5 20.9 164 474-637 79-266 (293)
131 2lni_A Stress-induced-phosphop 98.8 5.8E-08 2E-12 79.2 13.4 117 504-622 15-132 (133)
132 4gco_A Protein STI-1; structur 98.8 9.6E-08 3.3E-12 76.9 14.3 110 471-582 14-124 (126)
133 2vgx_A Chaperone SYCD; alterna 98.8 1.3E-08 4.4E-13 84.9 9.2 98 469-568 20-117 (148)
134 2vyi_A SGTA protein; chaperone 98.8 7.7E-08 2.6E-12 78.1 13.7 118 505-624 12-130 (131)
135 2qfc_A PLCR protein; TPR, HTH, 98.8 7.9E-07 2.7E-11 84.0 22.4 165 472-636 77-265 (293)
136 3dss_A Geranylgeranyl transfer 98.8 6E-06 2.1E-10 77.6 27.4 233 376-616 40-317 (331)
137 2xcb_A PCRH, regulatory protei 98.8 3.4E-08 1.2E-12 81.8 10.8 102 505-607 18-120 (142)
138 1na0_A Designed protein CTPR3; 98.8 1.2E-07 4.1E-12 76.2 14.0 113 505-619 9-122 (125)
139 4f3v_A ESX-1 secretion system 98.8 8.4E-08 2.9E-12 87.4 14.0 188 447-639 18-239 (282)
140 1a17_A Serine/threonine protei 98.8 2.6E-07 9E-12 78.7 16.6 129 471-601 14-145 (166)
141 1p5q_A FKBP52, FK506-binding p 98.8 4.9E-08 1.7E-12 94.1 13.0 150 449-600 127-292 (336)
142 2e2e_A Formate-dependent nitri 98.8 4E-08 1.4E-12 85.1 10.5 125 481-607 21-149 (177)
143 2e2e_A Formate-dependent nitri 98.8 2.5E-08 8.4E-13 86.4 9.2 122 515-638 20-145 (177)
144 2fbn_A 70 kDa peptidylprolyl i 98.7 7.9E-09 2.7E-13 91.4 6.0 130 507-637 40-186 (198)
145 3upv_A Heat shock protein STI1 98.7 2E-07 6.8E-12 75.2 12.6 98 505-603 4-102 (126)
146 3sz7_A HSC70 cochaperone (SGT) 98.7 4.6E-07 1.6E-11 77.1 15.3 104 504-608 10-114 (164)
147 2lni_A Stress-induced-phosphop 98.7 3.3E-07 1.1E-11 74.6 13.9 118 468-587 14-132 (133)
148 2qfc_A PLCR protein; TPR, HTH, 98.7 2.1E-06 7.1E-11 81.1 21.1 163 439-601 79-265 (293)
149 1na0_A Designed protein CTPR3; 98.7 5E-07 1.7E-11 72.4 14.5 113 470-584 9-122 (125)
150 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.4E-12 77.7 11.4 96 471-568 19-114 (142)
151 1p5q_A FKBP52, FK506-binding p 98.7 4.2E-07 1.4E-11 87.6 15.9 121 506-627 148-283 (336)
152 2c2l_A CHIP, carboxy terminus 98.7 3.1E-07 1.1E-11 86.0 14.5 194 399-601 3-198 (281)
153 1elw_A TPR1-domain of HOP; HOP 98.7 5.5E-07 1.9E-11 71.4 14.1 102 505-607 4-106 (118)
154 1hxi_A PEX5, peroxisome target 98.7 2E-07 6.8E-12 74.4 11.3 96 509-605 21-117 (121)
155 3gw4_A Uncharacterized protein 98.7 2.9E-07 1E-11 81.5 13.2 157 446-603 3-177 (203)
156 2vyi_A SGTA protein; chaperone 98.6 5.4E-07 1.9E-11 73.0 13.6 118 469-588 11-129 (131)
157 3gw4_A Uncharacterized protein 98.6 6.5E-07 2.2E-11 79.2 14.8 157 411-568 3-175 (203)
158 3upv_A Heat shock protein STI1 98.6 3.9E-07 1.3E-11 73.5 11.8 98 540-638 4-102 (126)
159 1hxi_A PEX5, peroxisome target 98.6 1.8E-07 6.2E-12 74.7 9.1 95 542-637 19-114 (121)
160 2dba_A Smooth muscle cell asso 98.6 2.1E-06 7.1E-11 71.3 15.6 104 504-607 27-133 (148)
161 4gcn_A Protein STI-1; structur 98.6 4.2E-07 1.5E-11 73.2 10.5 99 506-605 9-115 (127)
162 2kck_A TPR repeat; tetratricop 98.6 5E-07 1.7E-11 70.8 10.8 95 542-637 8-106 (112)
163 2kck_A TPR repeat; tetratricop 98.6 6.1E-07 2.1E-11 70.3 11.3 101 505-606 6-110 (112)
164 2fbn_A 70 kDa peptidylprolyl i 98.6 1.8E-07 6.2E-12 82.5 9.1 155 445-601 14-185 (198)
165 4gcn_A Protein STI-1; structur 98.6 3.5E-07 1.2E-11 73.8 9.9 97 541-637 9-112 (127)
166 3rkv_A Putative peptidylprolyl 98.6 3.5E-07 1.2E-11 77.7 10.2 109 507-616 13-140 (162)
167 3q49_B STIP1 homology and U bo 98.5 5.2E-07 1.8E-11 74.0 11.0 101 504-605 8-109 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.5 7.3E-07 2.5E-11 75.8 12.0 99 539-638 10-109 (164)
169 1elw_A TPR1-domain of HOP; HOP 98.5 3.1E-06 1E-10 66.9 14.3 107 471-579 5-112 (118)
170 3q49_B STIP1 homology and U bo 98.5 1.2E-06 4.3E-11 71.6 12.2 100 539-639 8-108 (137)
171 1wao_1 Serine/threonine protei 98.5 1.5E-06 5.1E-11 88.0 14.3 117 479-597 15-134 (477)
172 1dce_A Protein (RAB geranylger 98.5 1.5E-05 5.2E-10 82.1 21.8 172 451-626 45-244 (567)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 9E-07 3.1E-11 89.2 11.4 143 449-593 248-405 (457)
174 2xev_A YBGF; tetratricopeptide 98.4 4.4E-06 1.5E-10 67.4 13.5 98 509-607 6-110 (129)
175 2dba_A Smooth muscle cell asso 98.4 8.3E-06 2.8E-10 67.6 15.3 113 468-583 26-143 (148)
176 4b4t_Q 26S proteasome regulato 98.4 9.8E-06 3.3E-10 81.5 18.6 164 473-636 58-244 (434)
177 3k9i_A BH0479 protein; putativ 98.4 6.8E-07 2.3E-11 70.9 7.6 92 517-608 2-96 (117)
178 1wao_1 Serine/threonine protei 98.4 5.4E-07 1.9E-11 91.2 8.7 121 510-632 11-134 (477)
179 1elr_A TPR2A-domain of HOP; HO 98.4 2.1E-06 7.2E-11 69.4 10.7 99 506-605 5-111 (131)
180 1ihg_A Cyclophilin 40; ppiase 98.4 1.5E-06 5.1E-11 84.6 11.3 90 539-629 272-362 (370)
181 2xev_A YBGF; tetratricopeptide 98.4 3.5E-06 1.2E-10 68.0 11.8 95 543-638 5-106 (129)
182 1elr_A TPR2A-domain of HOP; HO 98.3 3.7E-06 1.3E-10 68.0 10.8 109 471-580 5-119 (131)
183 2if4_A ATFKBP42; FKBP-like, al 98.3 1.2E-06 4E-11 84.4 9.0 149 470-638 179-329 (338)
184 2if4_A ATFKBP42; FKBP-like, al 98.3 1.9E-06 6.4E-11 83.0 10.0 153 435-607 179-333 (338)
185 3ro3_A PINS homolog, G-protein 98.3 2.3E-06 8E-11 72.2 8.7 61 472-532 11-76 (164)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.6E-10 81.4 14.8 129 435-566 268-412 (457)
187 1dce_A Protein (RAB geranylger 98.3 7.8E-05 2.7E-09 76.8 21.2 173 415-591 44-244 (567)
188 2hr2_A Hypothetical protein; a 98.3 7.5E-06 2.6E-10 67.0 10.7 100 507-606 13-135 (159)
189 2hr2_A Hypothetical protein; a 98.2 4.9E-06 1.7E-10 68.2 9.2 94 474-568 15-130 (159)
190 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-05 4.6E-10 77.9 14.0 90 504-594 272-362 (370)
191 4b4t_Q 26S proteasome regulato 98.2 0.0001 3.5E-09 73.9 20.6 197 372-568 11-244 (434)
192 1zu2_A Mitochondrial import re 98.2 1.5E-06 5.2E-11 71.0 5.4 90 517-607 14-125 (158)
193 3ro3_A PINS homolog, G-protein 98.2 6.9E-06 2.3E-10 69.3 9.4 130 507-636 11-157 (164)
194 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4.2E-11 69.4 4.3 85 552-637 2-90 (117)
195 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4.2E-10 67.9 10.6 101 472-573 13-131 (162)
196 2l6j_A TPR repeat-containing p 98.1 1.9E-06 6.5E-11 67.4 4.8 93 539-632 3-102 (111)
197 3n71_A Histone lysine methyltr 98.1 1.5E-05 5.1E-10 80.0 10.4 88 479-566 318-419 (490)
198 1na3_A Designed protein CTPR2; 98.0 3E-05 1E-09 57.8 9.6 81 539-620 8-89 (91)
199 2l6j_A TPR repeat-containing p 98.0 4.8E-06 1.6E-10 65.1 4.1 62 506-568 5-66 (111)
200 2kat_A Uncharacterized protein 97.9 5E-05 1.7E-09 59.6 9.1 82 523-605 3-85 (115)
201 1klx_A Cysteine rich protein B 97.9 0.00026 8.8E-09 57.6 13.4 111 484-603 9-127 (138)
202 2kat_A Uncharacterized protein 97.9 2.9E-05 1E-09 61.0 7.1 79 558-637 3-82 (115)
203 1zu2_A Mitochondrial import re 97.8 2.2E-05 7.7E-10 64.1 5.5 86 551-637 13-120 (158)
204 1klx_A Cysteine rich protein B 97.8 0.00021 7.2E-09 58.1 11.5 114 518-640 8-129 (138)
205 1na3_A Designed protein CTPR2; 97.8 0.00016 5.6E-09 53.6 9.8 79 506-585 10-89 (91)
206 3ma5_A Tetratricopeptide repea 97.8 6.7E-05 2.3E-09 57.1 7.6 66 539-604 6-72 (100)
207 3n71_A Histone lysine methyltr 97.8 0.00014 4.7E-09 73.0 11.4 125 444-568 318-463 (490)
208 2kc7_A BFR218_protein; tetratr 97.7 8.2E-05 2.8E-09 56.4 7.1 64 546-609 6-71 (99)
209 3ma5_A Tetratricopeptide repea 97.6 0.0002 6.9E-09 54.4 7.5 64 504-568 6-69 (100)
210 2kc7_A BFR218_protein; tetratr 97.6 0.00015 5E-09 55.0 6.5 86 511-605 6-93 (99)
211 3bee_A Putative YFRE protein; 97.5 0.00029 1E-08 52.2 7.5 68 538-605 4-75 (93)
212 3bee_A Putative YFRE protein; 97.4 0.00094 3.2E-08 49.5 8.7 66 571-637 4-72 (93)
213 3ly7_A Transcriptional activat 97.4 0.0025 8.6E-08 60.0 13.4 70 538-607 275-344 (372)
214 3ly7_A Transcriptional activat 97.2 0.0022 7.6E-08 60.4 11.4 70 566-637 270-339 (372)
215 1pc2_A Mitochondria fission pr 97.2 0.0017 5.9E-08 52.3 8.5 87 520-607 13-105 (152)
216 3qww_A SET and MYND domain-con 97.0 0.0016 5.5E-08 64.1 7.9 86 517-602 310-411 (433)
217 3u64_A Protein TP_0956; tetrat 96.9 0.0038 1.3E-07 56.3 9.2 108 521-636 179-297 (301)
218 3qww_A SET and MYND domain-con 96.8 0.0026 8.7E-08 62.7 8.2 87 482-568 310-410 (433)
219 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0076 2.6E-07 45.8 9.2 73 539-611 4-84 (104)
220 3u64_A Protein TP_0956; tetrat 96.8 0.014 4.7E-07 52.7 11.9 110 486-601 179-297 (301)
221 3qwp_A SET and MYND domain-con 96.8 0.0062 2.1E-07 60.1 10.6 96 512-607 294-410 (429)
222 1pc2_A Mitochondria fission pr 96.7 0.012 4.3E-07 47.3 10.1 89 486-575 14-107 (152)
223 3mkq_A Coatomer beta'-subunit; 96.7 0.045 1.5E-06 59.7 18.0 151 376-565 610-761 (814)
224 3qwp_A SET and MYND domain-con 96.7 0.0062 2.1E-07 60.1 9.9 91 547-637 294-400 (429)
225 3lvg_A Clathrin heavy chain 1; 96.7 2.3E-06 8E-11 81.6 -13.9 115 153-284 53-167 (624)
226 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.3E-06 56.1 19.2 100 158-286 633-732 (814)
227 1qsa_A Protein (soluble lytic 96.2 0.77 2.6E-05 47.2 21.9 115 484-601 228-347 (618)
228 1nzn_A CGI-135 protein, fissio 96.2 0.029 1E-06 43.4 8.6 87 520-607 16-108 (126)
229 4ady_A RPN2, 26S proteasome re 96.1 1.9 6.5E-05 46.2 39.6 256 338-601 382-657 (963)
230 2v5f_A Prolyl 4-hydroxylase su 96.0 0.069 2.4E-06 40.3 10.4 71 505-575 5-82 (104)
231 1nzn_A CGI-135 protein, fissio 95.9 0.085 2.9E-06 40.8 10.1 92 484-576 15-111 (126)
232 1wy6_A Hypothetical protein ST 95.6 0.59 2E-05 36.2 14.3 136 448-604 20-156 (172)
233 4h7y_A Dual specificity protei 95.3 0.16 5.5E-06 40.3 9.7 103 504-607 12-128 (161)
234 3lvg_A Clathrin heavy chain 1; 95.3 0.0069 2.4E-07 58.4 2.5 175 83-274 82-276 (624)
235 3mkq_B Coatomer subunit alpha; 95.3 1 3.5E-05 37.3 15.1 27 435-461 34-60 (177)
236 3ffl_A Anaphase-promoting comp 95.3 0.089 3E-06 42.7 8.5 45 539-583 121-165 (167)
237 3mkq_B Coatomer subunit alpha; 95.1 1.2 4.2E-05 36.8 15.6 99 94-213 15-113 (177)
238 4h7y_A Dual specificity protei 94.5 0.5 1.7E-05 37.5 10.4 103 399-503 12-127 (161)
239 1wy6_A Hypothetical protein ST 94.3 1.4 4.9E-05 34.2 15.1 141 129-293 17-157 (172)
240 4gns_B Protein CSD3, chitin bi 94.0 0.2 6.7E-06 52.6 9.8 127 474-600 252-398 (754)
241 1y8m_A FIS1; mitochondria, unk 94.0 0.67 2.3E-05 36.5 10.4 72 536-607 35-111 (144)
242 3o48_A Mitochondria fission 1 93.9 0.65 2.2E-05 36.1 9.9 73 535-607 35-112 (134)
243 4b4t_P 26S proteasome regulato 93.6 2.9 9.9E-05 41.2 17.0 187 414-602 30-247 (445)
244 2wpv_A GET4, UPF0363 protein Y 93.6 4.4 0.00015 37.3 19.4 64 121-199 35-102 (312)
245 4fhn_B Nucleoporin NUP120; pro 93.4 0.77 2.6E-05 51.8 14.0 191 441-637 818-1050(1139)
246 3o48_A Mitochondria fission 1 93.2 1.5 5.1E-05 34.1 10.8 76 500-575 35-114 (134)
247 1y8m_A FIS1; mitochondria, unk 93.2 1.8 6.1E-05 34.1 11.4 72 502-573 36-111 (144)
248 4gns_B Protein CSD3, chitin bi 92.4 0.74 2.5E-05 48.3 11.0 128 438-568 251-399 (754)
249 1zbp_A Hypothetical protein VP 91.9 0.63 2.2E-05 41.3 8.3 52 516-568 8-59 (273)
250 3lpz_A GET4 (YOR164C homolog); 91.7 8.3 0.00028 35.7 21.2 168 437-637 37-216 (336)
251 4b4t_P 26S proteasome regulato 91.3 12 0.0004 36.8 20.1 52 61-112 29-84 (445)
252 3txn_A 26S proteasome regulato 91.0 1.3 4.6E-05 42.4 10.4 25 437-461 21-45 (394)
253 4fhn_B Nucleoporin NUP120; pro 90.9 8.1 0.00028 43.5 18.2 52 370-426 817-868 (1139)
254 3ffl_A Anaphase-promoting comp 90.8 1.2 4.1E-05 36.2 8.2 25 608-633 123-147 (167)
255 2ff4_A Probable regulatory pro 89.2 1.6 5.6E-05 42.1 9.6 66 441-507 177-247 (388)
256 2ff4_A Probable regulatory pro 88.9 1 3.4E-05 43.6 7.9 59 542-600 173-232 (388)
257 1zbp_A Hypothetical protein VP 88.6 4.6 0.00016 35.9 10.9 120 479-605 6-132 (273)
258 4ady_A RPN2, 26S proteasome re 88.1 32 0.0011 37.1 42.2 260 305-571 383-660 (963)
259 1v54_E Cytochrome C oxidase po 87.0 6.2 0.00021 28.8 8.7 45 453-497 28-72 (109)
260 1v54_E Cytochrome C oxidase po 86.9 3.2 0.00011 30.2 7.2 63 345-408 25-87 (109)
261 1wdy_A 2-5A-dependent ribonucl 84.7 3.3 0.00011 37.7 8.7 13 126-138 9-21 (285)
262 2y69_E Cytochrome C oxidase su 82.7 11 0.00038 29.2 8.8 43 455-497 73-115 (152)
263 2wpv_A GET4, UPF0363 protein Y 81.1 33 0.0011 31.5 20.9 80 399-497 133-215 (312)
264 2y69_E Cytochrome C oxidase su 79.7 16 0.00055 28.3 8.8 62 100-162 69-130 (152)
265 4b4t_R RPN7, 26S proteasome re 79.1 24 0.00084 34.4 12.9 58 230-287 135-194 (429)
266 3txn_A 26S proteasome regulato 77.7 51 0.0017 31.5 20.2 24 87-110 22-45 (394)
267 2p58_C Putative type III secre 76.0 19 0.00066 26.1 7.8 58 408-472 48-105 (116)
268 4b4t_R RPN7, 26S proteasome re 74.9 30 0.001 33.8 12.2 99 471-569 132-237 (429)
269 4g8k_A 2-5A-dependent ribonucl 74.1 26 0.0009 32.6 11.4 12 493-504 317-328 (337)
270 2uwj_G Type III export protein 71.8 18 0.00062 26.2 6.8 52 408-465 47-98 (115)
271 1qsa_A Protein (soluble lytic 70.6 1E+02 0.0034 31.7 39.4 203 379-598 228-438 (618)
272 3eiq_C Programmed cell death p 69.8 25 0.00087 33.0 9.6 22 194-215 59-80 (358)
273 1wdy_A 2-5A-dependent ribonucl 68.3 25 0.00084 31.6 9.5 44 273-316 191-236 (285)
274 2qx5_A Nucleoporin NIC96; mRNA 68.0 1.2E+02 0.004 31.5 17.8 42 231-273 157-198 (661)
275 3esl_A Checkpoint serine/threo 65.4 60 0.0021 27.4 10.0 53 451-503 95-148 (202)
276 2uwj_G Type III export protein 62.6 41 0.0014 24.4 7.1 77 415-499 21-97 (115)
277 2p58_C Putative type III secre 62.3 43 0.0015 24.4 7.7 50 444-499 49-98 (116)
278 3esl_A Checkpoint serine/threo 61.9 71 0.0024 26.9 9.8 54 205-259 95-148 (202)
279 2zu6_B Programmed cell death p 60.4 31 0.0011 31.6 8.2 24 369-392 170-193 (307)
280 4a1g_A Mitotic checkpoint seri 60.0 22 0.00075 28.4 6.2 51 208-259 84-134 (152)
281 2wvi_A Mitotic checkpoint seri 57.9 25 0.00086 28.5 6.3 52 208-260 79-130 (164)
282 1k1a_A B-cell lymphoma 3-encod 57.9 51 0.0017 28.5 9.3 85 91-180 13-102 (241)
283 1n11_A Ankyrin; clathrin, BAND 54.8 63 0.0021 31.4 10.2 16 198-213 119-134 (437)
284 3hra_A Ankyrin repeat family p 53.3 36 0.0012 28.4 7.3 13 96-108 14-26 (201)
285 3eiq_C Programmed cell death p 52.9 1.5E+02 0.0051 27.8 13.6 63 403-466 220-284 (358)
286 2nsz_A Programmed cell death p 51.7 69 0.0024 24.7 7.8 64 473-537 10-75 (129)
287 3bu8_A Telomeric repeat-bindin 50.8 45 0.0016 28.2 6.7 53 521-573 88-147 (235)
288 3hra_A Ankyrin repeat family p 50.5 52 0.0018 27.4 7.9 80 129-214 12-94 (201)
289 3kea_A K1L; tropism, ANK repea 46.8 1.6E+02 0.0054 26.3 11.4 144 91-252 35-184 (285)
290 3mv2_A Coatomer subunit alpha; 45.8 1.8E+02 0.0062 26.7 11.3 48 490-537 190-239 (325)
291 4aez_C MAD3, mitotic spindle c 45.3 37 0.0013 29.2 5.6 52 207-259 132-183 (223)
292 1k1a_A B-cell lymphoma 3-encod 45.0 1.1E+02 0.0039 26.1 9.5 84 127-214 14-101 (241)
293 4g8k_A 2-5A-dependent ribonucl 44.5 1.7E+02 0.0058 26.9 11.1 20 89-108 27-46 (337)
294 4a1g_A Mitotic checkpoint seri 44.4 1.2E+02 0.0041 24.2 9.5 51 453-503 83-134 (152)
295 2ion_A PDCD4, programmed cell 42.5 65 0.0022 25.8 6.4 64 473-537 12-77 (152)
296 3eu9_A Huntingtin-interacting 41.3 23 0.0008 30.7 4.2 13 236-248 16-28 (240)
297 2d2s_A Exocyst complex compone 40.9 1.2E+02 0.0042 26.3 8.5 25 540-564 91-115 (235)
298 3kea_A K1L; tropism, ANK repea 40.1 1.2E+02 0.0043 27.1 9.1 10 390-399 213-222 (285)
299 2ijq_A Hypothetical protein; s 39.8 1.3E+02 0.0044 24.3 7.7 50 133-182 46-103 (161)
300 2ion_A PDCD4, programmed cell 39.0 1.5E+02 0.005 23.7 8.5 64 368-432 12-77 (152)
301 3jxi_A Vanilloid receptor-rela 38.6 34 0.0012 30.2 4.9 56 91-146 9-73 (260)
302 2qx5_A Nucleoporin NIC96; mRNA 38.6 3.4E+02 0.012 28.0 12.5 44 263-308 155-198 (661)
303 1bpo_A Protein (clathrin); cla 37.7 3E+02 0.01 26.9 13.0 93 50-149 333-425 (494)
304 2d2s_A Exocyst complex compone 37.4 1.9E+02 0.0064 25.2 9.1 22 406-427 24-45 (235)
305 4ets_A Ferric uptake regulatio 36.9 64 0.0022 26.1 5.7 67 67-134 16-84 (162)
306 3eyy_A Putative iron uptake re 35.6 95 0.0033 24.5 6.5 57 76-134 11-67 (145)
307 2fe3_A Peroxide operon regulat 34.9 1.2E+02 0.0041 23.9 7.0 57 77-134 15-71 (145)
308 2zu6_B Programmed cell death p 34.8 2.7E+02 0.0091 25.4 11.8 25 473-497 169-193 (307)
309 2rfa_A Transient receptor pote 34.6 1.7E+02 0.0057 24.9 8.8 24 303-326 158-181 (232)
310 3lpz_A GET4 (YOR164C homolog); 34.3 2.8E+02 0.0097 25.6 30.5 127 353-498 82-215 (336)
311 4b4t_S RPN3, 26S proteasome re 34.1 3.6E+02 0.012 26.8 12.6 26 85-110 232-257 (523)
312 3kae_A CDC27, possible protein 33.7 1.9E+02 0.0067 23.5 14.0 28 507-534 116-143 (242)
313 3bqo_A Telomeric repeat-bindin 33.5 73 0.0025 26.6 5.3 48 521-568 94-145 (211)
314 2nsz_A Programmed cell death p 33.3 1.6E+02 0.0056 22.6 9.9 64 368-432 10-75 (129)
315 3ljn_A Hypothetical protein; a 33.0 1.5E+02 0.0052 27.6 8.8 93 83-185 17-112 (364)
316 1n11_A Ankyrin; clathrin, BAND 33.0 1.3E+02 0.0043 29.1 8.4 110 232-353 17-133 (437)
317 2fu4_A Ferric uptake regulatio 32.6 1.2E+02 0.0041 20.8 6.0 58 496-554 8-66 (83)
318 2ijq_A Hypothetical protein; s 32.1 1.9E+02 0.0066 23.3 7.6 60 87-147 36-103 (161)
319 3t8k_A Uncharacterized protein 32.1 2.1E+02 0.0073 23.5 10.1 65 232-296 41-109 (186)
320 1ug3_A EIF4GI, eukaryotic prot 31.1 2.3E+02 0.0079 26.3 9.3 24 230-253 15-38 (339)
321 2fe3_A Peroxide operon regulat 30.0 1.7E+02 0.0057 23.0 7.0 42 161-202 28-69 (145)
322 2r9g_A AAA ATPase, central reg 29.7 2.5E+02 0.0086 23.6 10.2 30 334-364 18-47 (204)
323 2xig_A Ferric uptake regulatio 29.6 1.6E+02 0.0056 23.3 6.9 67 136-203 9-75 (150)
324 4b4t_S RPN3, 26S proteasome re 29.3 95 0.0032 30.8 6.4 65 505-569 231-299 (523)
325 3eu9_A Huntingtin-interacting 28.6 2.1E+02 0.007 24.3 8.4 13 95-107 17-29 (240)
326 2b7e_A PRE-mRNA processing pro 28.2 80 0.0027 20.3 3.7 32 171-202 3-35 (59)
327 2keb_A DNA polymerase subunit 27.8 1.7E+02 0.0059 21.1 5.8 34 101-134 26-59 (101)
328 3bge_A Predicted ATPase; struc 27.8 2.7E+02 0.0092 23.3 9.1 39 334-372 11-49 (201)
329 3l6a_A Eukaryotic translation 27.4 3.9E+02 0.013 25.1 12.1 26 229-254 15-40 (364)
330 2wvi_A Mitotic checkpoint seri 26.7 2.5E+02 0.0087 22.7 10.4 45 524-568 79-124 (164)
331 1mzb_A Ferric uptake regulatio 26.5 1.3E+02 0.0043 23.4 5.7 60 496-556 9-69 (136)
332 1bpo_A Protein (clathrin); cla 26.4 4.6E+02 0.016 25.6 10.7 140 379-531 343-482 (494)
333 3pvs_A Replication-associated 26.4 4.6E+02 0.016 25.5 13.2 53 483-535 268-325 (447)
334 1mzb_A Ferric uptake regulatio 26.3 1.6E+02 0.0053 22.9 6.2 41 161-201 24-65 (136)
335 2fu4_A Ferric uptake regulatio 26.1 1.6E+02 0.0054 20.1 6.4 31 487-517 34-64 (83)
336 4gq2_M Nucleoporin NUP120; bet 25.8 4.9E+02 0.017 28.4 12.0 28 575-602 899-926 (950)
337 3twr_A Tankyrase-2; ankyrin re 25.6 2.2E+02 0.0076 22.3 7.5 14 94-107 15-28 (165)
338 1wgl_A TOLL-interacting protei 25.4 46 0.0016 21.5 2.3 47 595-643 12-58 (59)
339 3ljn_A Hypothetical protein; a 25.2 87 0.003 29.3 5.5 13 482-494 253-265 (364)
340 2o03_A Probable zinc uptake re 24.7 1.1E+02 0.0039 23.5 5.1 46 89-134 15-60 (131)
341 3aji_A 26S proteasome non-ATPa 24.5 3E+02 0.01 23.1 8.6 19 91-109 10-28 (231)
342 3e3v_A Regulatory protein RECX 24.5 2.9E+02 0.01 22.6 9.7 114 453-569 51-166 (177)
343 4gq2_M Nucleoporin NUP120; bet 24.4 3.9E+02 0.013 29.2 10.9 110 441-568 816-925 (950)
344 3eyy_A Putative iron uptake re 24.0 1.5E+02 0.005 23.4 5.7 41 161-202 25-65 (145)
345 2ynq_A ESSB; membrane protein, 23.9 2.6E+02 0.009 22.4 6.7 82 517-602 20-102 (161)
346 3ltm_A Alpha-REP4; protein eng 23.6 3.2E+02 0.011 22.7 19.1 17 434-450 94-110 (211)
347 3mwm_A ZUR, putative metal upt 23.2 1.1E+02 0.0037 24.0 4.7 46 89-134 18-63 (139)
348 3aji_A 26S proteasome non-ATPa 23.1 1.2E+02 0.0041 25.8 5.6 16 270-285 12-27 (231)
349 3bu8_A Telomeric repeat-bindin 22.8 3.6E+02 0.012 23.0 12.5 20 444-463 123-142 (235)
350 2w57_A Ferric uptake regulatio 22.8 1.7E+02 0.0059 23.1 5.9 34 169-202 32-65 (150)
351 3d9h_A CDNA FLJ77766, highly s 22.8 2.6E+02 0.0087 24.9 8.0 23 86-108 14-36 (285)
352 2w57_A Ferric uptake regulatio 22.8 1.7E+02 0.0059 23.1 5.9 56 78-134 11-67 (150)
353 3jxi_A Vanilloid receptor-rela 22.7 1.9E+02 0.0066 25.1 7.0 53 163-215 11-72 (260)
354 3bqo_A Telomeric repeat-bindin 22.5 1.4E+02 0.0049 24.9 5.1 49 486-535 94-147 (211)
355 3b7b_A Euchromatic histone-lys 22.3 2E+02 0.0068 24.4 7.0 12 92-103 16-27 (237)
356 2pm7_A Protein WEB1, protein t 22.3 2.8E+02 0.0097 26.4 8.2 152 473-632 159-360 (399)
357 2qfz_A TBC1 domain family memb 22.0 1.5E+02 0.005 27.7 6.2 40 496-535 235-274 (345)
358 3ltj_A Alpharep-4; protein eng 21.8 3.3E+02 0.011 22.3 19.6 49 399-451 58-106 (201)
359 3ctd_A Putative ATPase, AAA fa 21.5 3.7E+02 0.013 22.8 9.1 30 335-364 40-69 (213)
360 2dzn_A Probable 26S proteasome 21.2 1.1E+02 0.0039 25.8 5.0 14 130-143 10-23 (228)
361 4ets_A Ferric uptake regulatio 20.8 1.7E+02 0.0057 23.7 5.5 46 158-203 36-83 (162)
362 3ax2_A Mitochondrial import re 20.2 2.1E+02 0.0072 19.4 5.1 29 578-606 22-50 (73)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-41 Score=357.24 Aligned_cols=489 Identities=10% Similarity=-0.015 Sum_probs=358.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... .+++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788889999999999999999999988854 477788888899999999999999999887543 45788889999
Q ss_pred HHHHhcCChhhHHHHHHHHHhC---------------CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCch
Q 006281 162 AVLASDGYIDNALKMFDEMSHR---------------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (652)
.+|.+.|++++|..+|+++... +..++..+|+.++.+|.+.|++++|.+.|+++.+. .|.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cchhh
Confidence 9999999999999998853211 11223445555555555555555555555555554 33334
Q ss_pred hhHHHHHHHHHccCCHHHHHH--H-HHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 227 VIAVLIIHGFCKGKRVEEAFK--V-LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~--~-~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
..+..+...+...++.+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 444444433332222211111 0 222322222233334444455555555555555555554433 24444444444
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 383 (652)
..+.+.|+ +++|+.+|+++.+.+. .+..++..++.++.+.|++++
T Consensus 313 ~~~~~~g~----------------------------------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 313 DTLFVRSR----------------------------------FIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp HHHHHTTC----------------------------------HHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcC----------------------------------HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHH
Confidence 44444444 4555555555554442 256678888888999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 384 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
|..+++.+.+... .+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 358 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 358 LYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999886543 3788899999999999999999999999987643 2678999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCCcc
Q 006281 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLA 539 (652)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~ 539 (652)
.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|..++..|.+.|++++|.++|+++++. +..|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 75 668889999999999999999999999999876433 7889999999999999999999999998876 44566
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 540 --RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 540 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
..+|..++.+|.+.|++++|.++++++.+ .|.++..+..++.+|.+.|++++|.+.++++.+.+|++.. .+..+..
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~ 592 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM-ASDLLKR 592 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHHHHHH
Confidence 77899999999999999999999999877 6778889999999999999999999999999999998844 4444766
Q ss_pred Hhh
Q 006281 617 SLS 619 (652)
Q Consensus 617 ~~~ 619 (652)
+|.
T Consensus 593 ~~~ 595 (597)
T 2xpi_A 593 ALE 595 (597)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=345.35 Aligned_cols=506 Identities=10% Similarity=0.001 Sum_probs=363.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
..+.+.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 334455555555544332 256677778888888888888888888877643 45667777777788888888888
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 253 (652)
..+|+.+... .++..+++.++.+|.+.|++++|.++|+++... ... ..++.+.++ .
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-----~~~~~~~~~-----------~ 192 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF------RKD-----EKNANKLLM-----------Q 192 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT------C---------------C-----------C
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc------ccc-----ccccccccc-----------c
Confidence 8887776543 456677777777777777777777777643221 100 000000000 1
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHH--HHH-HHHHHcCCCCCC
Q 006281 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA--KEL-GEVIVSGKFTID 330 (652)
Q Consensus 254 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~ 330 (652)
..+..++..+|+.++.+|.+.|++++|..+|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+....
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 1233445666666667777777777777777666654311 122222222222221111111 111 222222222222
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006281 331 DDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (652)
Q Consensus 331 ~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (652)
..+++.++..+. .|++++|.++|+++.+. +++..++..++..|.+.|++++|.++|+++.+.+.. +..+++.++.+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 348 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLAS 348 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHH
Confidence 233444344443 36788888888887765 578999999999999999999999999999987654 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
|.+.|++++|..+++++.+.. ..+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3478899999999999999999999999999864 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++++..+. ++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 427 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998643 37889999999999999999999999999987765 7889999999999999999999999998652
Q ss_pred ----CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 570 ----LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 570 ----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+.. ...+..++.+|.+.|++++|++.++++.+.+|.. ...+..++.+|.+.|++++|.+.++++.+..
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 222 4578899999999999999999999999999877 4566669999999999999999999998763
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-27 Score=239.87 Aligned_cols=379 Identities=13% Similarity=0.087 Sum_probs=279.5
Q ss_pred HHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH
Q 006281 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (652)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 277 (652)
.+.+.|++++|.+.++.+.+. .|++...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666555 45555555556666666666666666666655432 23555666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 278 FEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (652)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m 356 (652)
++|...|+++.+. .|+ ...+..+..++...|++++|...++.+.+.
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------- 130 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------------------------------- 130 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------
Confidence 6666666666553 232 224455555555555555555544443322
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
. +.+...+..+...+...|++++|.+.|+++.+..+. +..+|..+...+...|++++|+..|+++.+.+.. +..
T Consensus 131 ---~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 131 ---N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp ---C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ---C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 1 112344555666777788888888888888776543 6778888999999999999999999998887533 567
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
.|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|.+.|+++.+.... +..+|..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 78888888999999999999999888764 556788889999999999999999999999876433 5778888999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
+.|++++|.+.|+++++..+. +..++..++.++.+.|++++|++.++++.+ .|.....+..++.++.+.|++++|++.
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999887764 778889999999999999999999999877 566777888999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
++++.+.+|+.... +..++..+...|+
T Consensus 362 ~~~a~~~~p~~~~a-~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADA-YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHH-HHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHH-HHhHHHHHHHccC
Confidence 99999999987544 4448777766553
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.3e-27 Score=234.19 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
++..+...+...|++++|...|+++.+.++. +...|..+...+...|++++|+..|++....... +..++..+..++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHH
Confidence 3444444444555555555555555444322 4445555556666666666666666665554321 3555566666666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (652)
+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. ..+..++..+...+...|++++|.+
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666543 3345566666666666666666666666666542 2355566666666666666666666
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
.|+++++..+. +...+..++.++.+.|++++|.+.++++.+ +|..+..+..++..+...|
T Consensus 327 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 327 LYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 66666655443 455666666666666666666666666655 4555555656655554433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=257.35 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=150.2
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HHH
Q 006281 349 AIVFFNFMIEKGRVPTL-STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR---------LRE 418 (652)
Q Consensus 349 a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 418 (652)
+..+.+.+.+++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34445555555554443 34677777888888888888888888877888888888888887776543 577
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 006281 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (652)
Q Consensus 499 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (652)
.|+.||..||++||.+|++.|++++|.++|++|.+.+..|+..+|+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888877777765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=257.38 Aligned_cols=212 Identities=14% Similarity=0.156 Sum_probs=126.8
Q ss_pred HHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHc
Q 006281 246 FKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (652)
Q Consensus 246 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (652)
..+.+.+.+++..+.. ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3444455544444332 245666666666666666666666666666666666666666666554432111
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 006281 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (652)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (652)
...++.+.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011234556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 405 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-25 Score=229.48 Aligned_cols=260 Identities=16% Similarity=0.070 Sum_probs=190.0
Q ss_pred cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006281 343 SIDPRSAIVFFNFMIE-----KGRV--------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (652)
Q Consensus 343 ~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (652)
.|++++|+..|+++.+ .... .+...+..+...+...|++++|...++.+.+.... ...+..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 5677777777777766 2111 12445666677777888888888888887776543 6677777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
+...|++++|...++++...... +..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887766432 55677777778888888888888888887764 44567777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-c----HHHHHHHHHHHHh---cCCHHHHHH
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-A----RSILSTFMISLCR---RGHFLVATK 561 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~ 561 (652)
...++++.+.... +...+..+...+...|++++|.+.+++++...+.. + ...+..++.++.. .|++++|.+
T Consensus 358 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 8888887765322 45677777778888888888888888776644321 1 3367777888888 888888888
Q ss_pred HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 562 LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++++.. .|..+..+..++.++...|++++|.+.++++.+.+|+..
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 8887766 566667777888888888888888888888888887764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.7e-24 Score=220.53 Aligned_cols=448 Identities=10% Similarity=-0.047 Sum_probs=315.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (652)
...+..+...+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|.+.++++.+. .|.+..++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHH
Confidence 4456677777888888888888888887764 57777777777788888888888888887776 566677777777
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
.++.+.|++++|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 152 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------- 152 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH-------
Confidence 788888888888888887776542 233333344444433333333333333333333222222111100000
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK---RNKSDELVEVYKV 390 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~ 390 (652)
......++.......+..+.... ... ....+.+...+......+.. .|++++|...|+.
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 ---------DKQENLPSVTSMASFFGIFKPEL---TFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCC---CCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ---------hhccCCchhHHHHHHHhhcCHHH---HHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 00001111111111111000000 000 00001123334444444444 8999999999999
Q ss_pred HHh-----C--CC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 391 LSA-----N--DY------FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 391 ~~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
+.+ . .. +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 887 3 11 1245678888999999999999999999999875 3488889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
++.+.+.. +.+...+..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++++++..+.
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999875 567888999999999999999999999999986543 5678888999999999999999999999887665
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch------hHHHHHHHHhc---cccHHHHHHHHHHHHhcCCCCc
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD------SHVILLKSLAD---AREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+...+..++.++...|++++|.+.++++.. .|..+. .+..++.++.. .|++++|++.++++.+..|...
T Consensus 371 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 371 -APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 677899999999999999999999998866 343433 88899999999 9999999999999999999875
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..+..++.+|...|++++|.+.++++.+..
T Consensus 450 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 450 -QAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 444559999999999999999999888763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.3e-22 Score=205.51 Aligned_cols=346 Identities=13% Similarity=0.062 Sum_probs=237.1
Q ss_pred CCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 006281 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (652)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (652)
.|.+...+..++..+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.+.. +...+..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 55666777777777777888888888887776642 235667777777777777777777777776654311 2233333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHh
Q 006281 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-L---STLSNLSKNLCK 377 (652)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~l~~~~~~ 377 (652)
+...+...|++++|...++.+... .|+ . ..+..+...+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------~~~~~~~~~~~~~l~~~~~- 142 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS------------------------------------NPSENEEKEAQSQLIKSDE- 142 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS------------------------------------CCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc------------------------------------CCCChhhHHHHHHHHHHHH-
Confidence 444444444444444443333221 111 1 22222222210
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
...+..+...+...|++++|+..|+++.+... .+..++..+..++.+.|++++|.++
T Consensus 143 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 143 ----------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 01223335557778888888888888887643 3677788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH------------HHHHHcCCCHHHHH
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL------------LEGLCQETNLQAAF 525 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~g~~~~a~ 525 (652)
|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +...+..+ ...|...|++++|.
T Consensus 200 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 200 LKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888764 567788888888888888888888888888865322 34444444 77888889999999
Q ss_pred HHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 526 EVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 526 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
..|++++...+. + ...+..++.++.+.|++++|++.++++.. .|..+..+..++.+|...|++++|+..++++.
T Consensus 278 ~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 278 SKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999988876544 3 34678888889999999999999998866 67778888899999999999999999999999
Q ss_pred hcCCCCcHHHHHHHH------------HHhhcCC-----CCchHHHHHHH
Q 006281 601 ESSPTMLQEISAELF------------ASLSSSS-----YPEPILLLLHA 633 (652)
Q Consensus 601 ~~~~~~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 633 (652)
+.+|+.. ..+..+. ..|...| +.+++.+.+++
T Consensus 357 ~~~p~~~-~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 357 EHNENDQ-QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp TTSSSCH-HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HhCcchH-HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9888874 4444365 3355555 55666666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=8.3e-24 Score=221.60 Aligned_cols=433 Identities=12% Similarity=0.027 Sum_probs=247.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (652)
...|..+...+.+.|++++|+..|+++.+.+ +.+...+..+..++...|++++|++.++++... .|.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHH
Confidence 3467777888888888888888888888764 235677777788888888888888888888877 567777888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHH
Q 006281 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLI 307 (652)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~ 307 (652)
.++...|++++|.+.|+.+.. .|+.. ...+..+...+...+|...++.+... ...|+. ..+..+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 888888888888888864322 22221 22234455555667778887777553 122222 2333444
Q ss_pred ccCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCC------HHHHHHH
Q 006281 308 VERRICEAKELGEVIVSGKFTIDDD-VLNALIGSVSS---------IDPRSAIVFFNFMIEKGRVPT------LSTLSNL 371 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---------~~~~~a~~~~~~m~~~~~~~~------~~~~~~l 371 (652)
...+.+.+...+..... ..+... ....+...+.. +++++|+.+++.+.+...... ..++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 44555444333221111 111111 22222222221 245666666666654432211 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
...+...|++++|...++...+.. |+...+..+...+...|++++|...|+++.+.... +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 455556666666666666666543 33555666666666666666666666666655322 455566666666666666
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
++|.+.++++.+.. +.+...+..+..+|...|++++|...++++.+.... +...+..+...+...|++++|.+.|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666666553 334555666666666666666666666666654222 3445556666666666666666666665
Q ss_pred hhCCCC-----ccHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 532 VNHDVM-----LARSILSTFMISLCRR----------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 532 ~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
++..+. .....+.....++... |++++|+..++++.. .|.++..+..++.++...|++++|++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 543311 1112233344555555 666666666666655 455555666666666666666666666
Q ss_pred HHHHHhcCCCC
Q 006281 596 IKWIQESSPTM 606 (652)
Q Consensus 596 ~~~~~~~~~~~ 606 (652)
++++.+..|..
T Consensus 485 ~~~al~~~~~~ 495 (537)
T 3fp2_A 485 FEDSAILARTM 495 (537)
T ss_dssp HHHHHHHC--C
T ss_pred HHHHHHhCCCc
Confidence 66666666655
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.7e-22 Score=204.96 Aligned_cols=369 Identities=11% Similarity=0.024 Sum_probs=185.8
Q ss_pred ccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006281 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269 (652)
Q Consensus 190 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 269 (652)
..+..+...+.+.|++++|+..|+++... .|.+..++..+..++...|++++|...|+++.+.+. .+...+..+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 33444444444455555555555554443 344445555555555555555555555555554321 13445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC
Q 006281 270 EFKLMGSVFEREVVLKKKRKLGVAPRT----NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345 (652)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (652)
+|.+.|++++|...|+++.+.. |+. ..+..+...+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~----------------------------------- 145 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQR----------------------------------- 145 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHH-----------------------------------
Confidence 5666666666666665555432 221 12222222111100
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
+..+...+...|++++|...|+.+.+.... +..++..+..+|...|++++|+..|++
T Consensus 146 ----------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 146 ----------------------LRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp ----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred ----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111112233344444444444444433221 334444444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL------------ISKFSEVGEIEGALRLF 493 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~ 493 (652)
+.+... .+..++..+..++...|++++|.+.|+++.+.. +.+...+..+ ...|...|++++|...|
T Consensus 203 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 203 ASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 443321 134444444444444555555555554444432 2222223222 55666666677777766
Q ss_pred HHHHHCCCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 494 HNMLEKGVAPD-----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 494 ~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+++.+. .|+ ...+..+..++.+.|++++|...+++++...+. +...+..++.+|...|++++|.+.++++.+
T Consensus 281 ~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 281 ESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666653 233 235566666666677777777777766655443 556666666677777777777777766655
Q ss_pred -CCCCchhHHHHHHH------------Hhccc-----cHHHHHHHHHH-HHhcCCCCc---------HHHHHHHHHHhhc
Q 006281 569 -DLGHSDSHVILLKS------------LADAR-----EVEMAIEHIKW-IQESSPTML---------QEISAELFASLSS 620 (652)
Q Consensus 569 -~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~---------~~~~~~l~~~~~~ 620 (652)
.|.++..+..++.+ |...| +.+++.+.+++ +.+..|+.. ...+..+..+|..
T Consensus 358 ~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 45555555555532 33333 55677777776 566665532 2234456666666
Q ss_pred CCCCchH
Q 006281 621 SSYPEPI 627 (652)
Q Consensus 621 ~g~~~~a 627 (652)
.|+.+++
T Consensus 438 L~d~~~r 444 (450)
T 2y4t_A 438 LSDPEMR 444 (450)
T ss_dssp SSGGGGC
T ss_pred hCCHHHH
Confidence 6665544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.1e-22 Score=209.57 Aligned_cols=429 Identities=10% Similarity=0.028 Sum_probs=281.8
Q ss_pred HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
...+..+...+.+.|++++|++.|+++....+. ++.+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456677777888888888888888888776432 66778888888888888888888888887764 2245667777777
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFK 272 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~ 272 (652)
+...|++++|...|+.+... |.... ..+..+...+....|...++.+... ...|+.. .+..+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN----GDFDG---ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcC----CCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 88888888888888643322 22111 1233445556667788888877553 1223333 334445
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-Hc--------cCCHHHHHHHHHHHHcCCCCCCHH------HHHHH
Q 006281 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-IV--------ERRICEAKELGEVIVSGKFTIDDD------VLNAL 337 (652)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~--------~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l 337 (652)
...+.+.+...+..... ..+....+...+..+ .. .+++++|..+++.+.+..+..... .+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 55666555444322211 122222222222222 11 136778888888877765443221 11111
Q ss_pred -HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006281 338 -IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416 (652)
Q Consensus 338 -~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 416 (652)
......|++++|...++...+.. |+...+..+...+...|++++|...++.+.+.... +..+|..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 12244578888888888887754 34677777777888888888888888887776543 667788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 417 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
++|+..|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888888776433 45677778888888888888888888888764 556677888888888888888888888887
Q ss_pred HHCCCC-----CCHhhHHHHHHHHHcC----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 497 LEKGVA-----PDATTYTSLLEGLCQE----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 497 ~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
.+.... .....+..+...+... |++++|...|+++++..+. +...+..++.++.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 753211 1112234445566666 8888888888888877665 66778888888888888888888
Q ss_pred HHHHhhh
Q 006281 562 LLRGLSS 568 (652)
Q Consensus 562 ~~~~~~~ 568 (652)
.++++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888777
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.3e-18 Score=171.62 Aligned_cols=316 Identities=11% Similarity=0.031 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006281 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339 (652)
Q Consensus 260 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (652)
|+..+..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 455667777778888888888888887766432 234455556666666666666666665554432
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CcCHHHHHHH----------
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY---FTDMESYNVM---------- 406 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l---------- 406 (652)
+.+...+..+...+...|++++|...++.+.+... . +...+..+
T Consensus 68 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 68 ----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLR 124 (359)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHH
Confidence 12445566666777777777777777777776543 2 33344333
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 407 --VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 407 --i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 5778888999999999999887743 367788888888999999999999999988775 667888888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH------------HHHHHHHcCCCHHHHHHHHHHhhhCCCCccH----HHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYT------------SLLEGLCQETNLQAAFEVFNKSVNHDVMLAR----SILSTFMI 548 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 548 (652)
++++|...|++..+.... +...+. .+...+.+.|++++|...+++++...+. +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 999999999998875322 333332 2356688899999999999998887655 33 33556788
Q ss_pred HHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 549 SLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
++...|++++|.+.++++.+ .|.++..+..++.++...|++++|++.++++.+.+|+... ....+..+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~ 349 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ-IREGLEKA 349 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Confidence 89999999999999998877 6778888889999999999999999999999999988743 34435443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.2e-18 Score=171.90 Aligned_cols=291 Identities=11% Similarity=0.045 Sum_probs=239.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+..|++++|+..|+.+.+... .+...+..+...+...|++++|...++.+.+..+. +...+..+..++...|++++|.
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHH
Confidence 445566666666666665432 35778888889999999999999999999887543 6788999999999999999999
Q ss_pred HHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 421 GVIQEMKRKGLD--PDVSFYNSL------------MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 421 ~~~~~~~~~~~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
..|+++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+..+|...|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 999999876320 134444444 577889999999999999999875 66788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH------------HHHHHHHhcC
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS------------TFMISLCRRG 554 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g 554 (652)
++|...++++.+... .+..++..+...+...|++++|...|+++++..+. +...+. .++..+.+.|
T Consensus 171 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999997643 37888999999999999999999999999887765 333333 2367789999
Q ss_pred CHHHHHHHHHHhhh-CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 555 HFLVATKLLRGLSS-DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
++++|.+.++++.. .|.++. .+..++.++...|++++|++.++++.+.+|.... .+..++.++...|++++|.+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-ALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999877 555443 2446889999999999999999999999998854 44459999999999999999
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
.++++.+.
T Consensus 328 ~~~~a~~~ 335 (359)
T 3ieg_A 328 DYEAAQEH 335 (359)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988875
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.9e-19 Score=171.06 Aligned_cols=276 Identities=12% Similarity=-0.033 Sum_probs=211.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGV 422 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~ 422 (652)
|++++|+.+|+++.+... .+...+..++..+...|++++|..+++.+.+.... +...|..+...+...| ++++|...
T Consensus 36 g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444443321 13334455556677888888888888888776543 6677888888888888 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006281 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 502 (652)
|++..+.... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+....
T Consensus 114 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 191 (330)
T 3hym_B 114 LSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 9988876432 56678888888889999999999999888774 445677777888899999999999999998876433
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD--------VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
+...+..+...+...|++++|...+++++... ......++..++.++...|++++|++.++++.. .|..+
T Consensus 192 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 192 -DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred -ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 67788888889999999999999999887642 123456888999999999999999999999877 67788
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL-SSSSYPE 625 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 625 (652)
..+..++.++...|++++|++.++++.+.+|+.... +..++.++ ...|+.+
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS-VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH-HHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH-HHHHHHHHHHHhCchh
Confidence 889999999999999999999999999999987544 44488777 4555543
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3e-17 Score=170.76 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-hhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-A-TTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555554211334555555555555555555555555555543 222 1 3455555555555555555555555
Q ss_pred hhhCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--
Q 006281 531 SVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-- 606 (652)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 606 (652)
+++..+. +...+...+.. +...|+.++|.++|++..+ .|.++..|..++..+.+.|+.++|..+++++....|.+
T Consensus 382 Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 382 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 5544322 22222222211 2235555555555555544 34445555555555555555555655555555543322
Q ss_pred -cHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 607 -LQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 607 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...+|...+......|+.+.+..+.+++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444444445555555555555555443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-18 Score=169.65 Aligned_cols=270 Identities=10% Similarity=-0.026 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
..+...+..+...+...|++++|.++|+.+.+..+. +...+..++.++...|++++|..+++++.+.... +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 345556777778888999999999999999887554 5667778889999999999999999999987533 67788889
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 442 MEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 442 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
...+...| ++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+++.+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999875 556788999999999999999999999999976433 45667779999999999
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----------CCCchhHHHHHHHHhccccHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD----------LGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~ 590 (652)
+++|.+.++++++..+. +...+..++..+...|++++|...++++... +..+..+..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999988876 7788999999999999999999999988652 445678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|++.++++.+..|......+. ++.++...|++++|.+.++++.+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSA-IGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHH-HHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHH-HHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999987655554 999999999999999999966543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.9e-16 Score=159.88 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLR 417 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 417 (652)
.++|+..|+...+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 334444444443332 34444444445554 566666666666666553 44556666666664 56677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-----GEIEG 488 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~ 488 (652)
+|..+|++..+.| +...+..+...+.. .++.++|.+.|+...+.| +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777666553 34455555555555 667777777777766543 344555566666655 67777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 006281 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQET---NLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATK 561 (652)
Q Consensus 489 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 561 (652)
|+..|++..+.| +...+..+...|...| ++++|.++|+++.+.+ ++..+..+...|.. .+++++|.+
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777777776654 3445555666665545 6677777777766653 45566667777766 677777777
Q ss_pred HHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCC
Q 006281 562 LLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 605 (652)
++++..+. .++.++..++..|.. .+++++|...++++.+.+|+
T Consensus 389 ~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 389 WMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 77776653 345666677777766 67777777777777777643
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.4e-15 Score=160.26 Aligned_cols=434 Identities=11% Similarity=0.103 Sum_probs=315.5
Q ss_pred HHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHHHHHHH
Q 006281 68 LGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144 (652)
Q Consensus 68 ~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 144 (652)
.++.+|... .-.-..++.--....++|...|.+.+|.++++++.-.+ ..-+....+.|+.+..+. +..+..++...
T Consensus 968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 356666422 11223455556778899999999999999999998432 113456677788777777 56777777666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHH-hcCcHHHHHHHHHHHHhccCCCC
Q 006281 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQVLSMLDEVRKRENSMI 223 (652)
Q Consensus 145 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~ 223 (652)
... .....+...+...|.+++|..+|++.. .+...+..+. ..|++++|.++.+++
T Consensus 1047 Ld~-------~d~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv-------- 1102 (1630)
T 1xi4_A 1047 LDN-------YDAPDIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC-------- 1102 (1630)
T ss_pred hhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc--------
Confidence 642 224457888899999999999999963 1222223333 678999999998865
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
..+.+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++.. ++....+.+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 33678889999999999999999999664 378889999999999999999999999887765 3333344588
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDD-VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
.+|.+.++++....+. . .++.. .++..-..+..|++++|..+|... ..|..+...+++.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8999999888644432 2 22333 344333446678999999999985 47999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 006281 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 462 (652)
.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998772 6689999999999999999998876643 2356677789999999999999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 463 ASGCSGNLKTYNILISKFSEV--GEIEGALRLFHNMLEKGVAP------DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
... +-....|+-|...|++. ++..+++++|..-. .+.| +...|.-++..|.+.|+++.|....-+-...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 665 55566777777777764 34455555555332 2222 4567888999999999999988333221110
Q ss_pred -----------CCCccHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 006281 535 -----------DVMLARSILSTFMISLCRRG---------------HFLVATKLLR 564 (652)
Q Consensus 535 -----------~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 564 (652)
....++.+|...+..|...+ +++++.+++.
T Consensus 1385 a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1385 AWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 11236677777777777666 7777777776
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.3e-16 Score=159.04 Aligned_cols=223 Identities=12% Similarity=0.030 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 006281 366 STLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSF 437 (652)
Q Consensus 366 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~ 437 (652)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.| +...
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a 293 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDG 293 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHH
Confidence 344444444544 567777777777777654 45566667777776 788888888888887664 4556
Q ss_pred HHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 438 YNSLMEACCRE-----DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG---EIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 438 ~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+..+...|... +++++|...|++..+.| +...+..+...|...| ++++|++.|++..+.| +...+.
T Consensus 294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHH
Confidence 66677777766 78888888888888764 4456677777777655 7788888888888764 567777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC----CchhHH
Q 006281 510 SLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLG----HSDSHV 577 (652)
Q Consensus 510 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~ 577 (652)
.+...|.. .+++++|.+.|+++.+.+ ++..+..+...|.. .+++++|.++++++.+..+ ++....
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 78888877 788999999998888765 45677778888887 7889999999988877322 233333
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++..+. .+.+.|.+..++..+..|.
T Consensus 445 ~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 445 TEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 4443332 3445555555555555443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=6e-19 Score=174.86 Aligned_cols=267 Identities=12% Similarity=0.003 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+..+...+...|++++|...|+.+.+..+. +..++..+..++...|++++|+..|+++.+.... +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 344566667778888888888888888876543 6677888888888888888888888888776432 67778888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNI---------------LISKFSEVGEIEGALRLFHNMLEKGVAP-DATTY 508 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~ 508 (652)
+...|++++|.+.++++.+.. +.+...+.. .+..+...|++++|...|+++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 888888888888888888764 222222221 2333448899999999999999753321 47889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.++.+.|
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999887765 678899999999999999999999999877 7777888999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCC----------cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 588 EVEMAIEHIKWIQESSPTM----------LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++++|+..++++.+..|.. ....+..++.+|...|++++|..++++..
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999887765 25667779999999999999998887433
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=8.4e-15 Score=157.34 Aligned_cols=524 Identities=9% Similarity=0.062 Sum_probs=347.7
Q ss_pred cCCCCCCCHHHHHHhhhhhhc-cChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 006281 41 LGLRDSLSPSLVARVINPYLL-THHSLALGFFNWASQQPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118 (652)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (652)
+.+.....|+.+.-.++.+.. +.+..|+.+++.+...+. |.-+....+.++....+. +..+..+..++.....
T Consensus 977 ~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---- 1051 (1630)
T 1xi4_A 977 TALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---- 1051 (1630)
T ss_pred hhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc----
Confidence 334456888888887777765 568999999999875433 444566677777776666 6677777777655321
Q ss_pred HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
...+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..+
T Consensus 1052 ---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1052 ---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKA 1114 (1630)
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHH
Confidence 3447778888999999999999862 12223333333 6788999999988652 46788899999
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 278 (652)
+...|++++|+..|.+. .+...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++
T Consensus 1115 ql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 99999999999999553 346677779999999999999999999877654 33333335888999999988
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHH
Q 006281 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMI 357 (652)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~ 357 (652)
+...... .++...+..+...|...|++++|..+|..+ ..|..+...+. .|++++|.+.++..
T Consensus 1185 ele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 6554431 345667777888999999999999999885 35666666655 48899999999876
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006281 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437 (652)
Q Consensus 358 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 437 (652)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-+...
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 366888888889999999999988766432 256677899999999999999999998887554 234456
Q ss_pred HHHHHHHHHhc--CChhhHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHH
Q 006281 438 YNSLMEACCRE--DLLRPAKKLWDQMFASGCSG------NLKTYNILISKFSEVGEIEGALRLF-------------HNM 496 (652)
Q Consensus 438 ~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~m 496 (652)
|+-+...+++. ++..++.+.|..-. ++++ +...|..++..|.+.|+++.|.... .+.
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 66666666543 34445555554322 2233 5677999999999999999988322 222
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCC---------------CHHHHHHHHHHhhhC----------CCCccHHHHHHHHHHHH
Q 006281 497 LEKGVAPDATTYTSLLEGLCQET---------------NLQAAFEVFNKSVNH----------DVMLARSILSTFMISLC 551 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~ 551 (652)
+. -..|...|...+.-|...+ +.+++.++|.+.-.. ...-+..+-.++...|.
T Consensus 1395 i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~i 1472 (1630)
T 1xi4_A 1395 IT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 1472 (1630)
T ss_pred hc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhc
Confidence 21 1335666666666666555 666666666531000 01112233344445555
Q ss_pred hcCCHHHHHHHHHHhhh----------CCCCchhHHH-HHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 552 RRGHFLVATKLLRGLSS----------DLGHSDSHVI-LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~----------~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
...+++.-++.++.-.. +....--+.. -+..|.++|+|++|++++++..- +...+.....
T Consensus 1473 eeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~ 1543 (1630)
T 1xi4_A 1473 TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASE 1543 (1630)
T ss_pred CccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHH
Confidence 55554433222221111 0000111122 33444556888888888765321 2224455556
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|+.+.+.+++.-+.+.
T Consensus 1544 S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1544 SKDTELAEELLQWFLQE 1560 (1630)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666555444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.4e-18 Score=171.88 Aligned_cols=265 Identities=12% Similarity=-0.004 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+..+...+.+.|++++|...|+.+.+..+. +..+|..+..+|...|++++|+..|+++.+.... +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 445677777888999999999999998876544 7788999999999999999999999999887432 57889999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNL----------KTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLE 513 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~ 513 (652)
+...|++++|.+.++++.+.. +.+. ..+..+...|...|++++|...|+++.+.... ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998753 2222 23344578899999999999999999976432 25788999999
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
.+...|++++|.+.|+++++..+. +..++..++.+|...|++++|++.++++.. .|..+..+..++.+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999988765 788999999999999999999999999877 777788999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------cHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 593 IEHIKWIQESSPTM-----------LQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 593 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
++.++++.+..|.. ...++..+..++...|+.+.+....++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999877653 235677799999999999988877664
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=6.7e-18 Score=167.28 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS--- 440 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--- 440 (652)
+...+..+...+...|++++|...|+.+.+.... +..++..+..+|...|++++|+..++++...... +...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 4556666777777778888888888877766543 6677778888888888888888888887776422 1122211
Q ss_pred ------------HHHHHHhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006281 441 ------------LMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (652)
Q Consensus 441 ------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 506 (652)
.+..+...|++++|...++++.+.. +. +..++..+...|...|++++|...|+++.+... .+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 252 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYL 252 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHH
Confidence 2333448899999999999998874 33 578899999999999999999999999987632 2577
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC-----------ch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH-----------SD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-----------~~ 574 (652)
++..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|.+.++++.. .|.. ..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 8899999999999999999999999887765 677889999999999999999999998865 3333 57
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.|..++.++...|++++|..++++..
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 78899999999999999988876543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.4e-17 Score=161.99 Aligned_cols=263 Identities=11% Similarity=0.001 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 447 (652)
+......+...|++++|..+|+.+.+.... +...+..+..++...|++++|...++++.+... .+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 445556677778888888888877765443 666777778888888888888888888777642 256777778888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNIL--------------IS-KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
.|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 888888888888887753 2333333333 22 377889999999999999876433 678899999
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|++++|.+.+++++...+. +...+..++.++...|++++|.+.++++.. .|..+..+..++.++...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999887765 678899999999999999999999999877 67778889999999999999999
Q ss_pred HHHHHHHHHhcCCCC-----------cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 592 AIEHIKWIQESSPTM-----------LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 592 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
|++.++++.+..|.. ....+..++.++...|++++|.+++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999988873 35666679999999999999999887543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.7e-17 Score=157.04 Aligned_cols=253 Identities=12% Similarity=0.124 Sum_probs=197.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPT--LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
.+..|++..|+..++.... ..|+ ......+.++|...|+++.|...++. .-.|+..++..+...+...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 3445666666666554322 2222 23445567889999999999876654 23457778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876555 455666677889999999999999987 567888999999999999999999999999
Q ss_pred HHCCCCCCHhhH---HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 497 LEKGVAPDATTY---TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 497 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
.+.. |+.... ..++..+...|++++|..+|+++++..+. +..++..++.++.+.|++++|++.++++.. +|.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8763 443211 22334445668999999999999988664 788899999999999999999999999877 7888
Q ss_pred chhHHHHHHHHhccccHHH-HHHHHHHHHhcCCCCc
Q 006281 573 SDSHVILLKSLADAREVEM-AIEHIKWIQESSPTML 607 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~ 607 (652)
+..+..++..+...|+.++ +.++++++.+.+|+++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 8899999999999998865 5789999999999884
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=8.6e-15 Score=152.22 Aligned_cols=423 Identities=10% Similarity=0.083 Sum_probs=235.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+...|..++.. .+.|+++.|..+|+++.+.. |.+...|..++..+.+.|++++|.++|++..... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 66778777774 67788888888888888764 5677788888888888888888888888887763 56667776665
Q ss_pred HH-HhcCChhhHHH----HHHHHHhC-CCccC-cccHHHHHHHHHh---------cCcHHHHHHHHHHHHhccCCCCCch
Q 006281 163 VL-ASDGYIDNALK----MFDEMSHR-GVEFS-TIGFGVFIWKFCE---------NAKLGQVLSMLDEVRKRENSMINGS 226 (652)
Q Consensus 163 ~~-~~~~~~~~a~~----~~~~m~~~-~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (652)
.. ...|+.+.|.+ +|+..... |..|+ ...|...+..... .|+++.|..+|++.... . .....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P-~~~~~ 165 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-P-MINIE 165 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-C-CTTHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-h-hhhHH
Confidence 33 34566666655 66655432 43333 3455555544333 56777777777777653 1 11111
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcC---CCCCh-
Q 006281 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK------RKLG---VAPRT- 296 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------~~~~---~~p~~- 296 (652)
..|..........|. ..+. .++. ...++++.|..++..+ .+.. +.|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 222211110000000 0000 1110 1223455555555442 1111 23321
Q ss_pred -------hhHHHHHHHHHcc----CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 006281 297 -------NDYREFILGLIVE----RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365 (652)
Q Consensus 297 -------~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 365 (652)
..|...+...... ++... ....+..+|++.+... +.+.
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~------------------------------~~~~a~~~y~~al~~~-p~~~ 272 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTL------------------------------ITKRVMFAYEQCLLVL-GHHP 272 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHH------------------------------HHHHHHHHHHHHHHHH-TTCH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchh------------------------------HHHHHHHHHHHHHHhC-CCCH
Confidence 1222222111110 11100 0013334444444431 2245
Q ss_pred HHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006281 366 STLSNLSKNLCK-------RNKSD-------ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (652)
Q Consensus 366 ~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 431 (652)
..|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-- 350 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-- 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--
Confidence 566666655554 57766 77778877775212225667777777777888888888888887775
Q ss_pred CCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006281 432 DPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (652)
Q Consensus 432 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 508 (652)
.|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|..+|+..++... -+...|
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~ 428 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYV 428 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHH
Confidence 333 2467777777777777777777777777642 2222222222111 2346667777777776665421 145666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCC-c--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVM-L--ARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..++..+.+.|+.++|..+|++++...+. | ...+|...+......|+.+.+.++..++.+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666667777777777766665422 1 233566666666666666666666666544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=4.4e-17 Score=154.20 Aligned_cols=255 Identities=10% Similarity=-0.000 Sum_probs=207.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 452 (652)
+-....|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. ..|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 345567999999999887655432222335566789999999999999877552 3567788888999999999999
Q ss_pred hHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 453 PAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
+|.+.++++...+..| +...+..+..+|...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876434 566777888999999999999999997 357889999999999999999999999999
Q ss_pred hhCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 532 VNHDVMLAR-SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 532 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
++.++.... .....++..+...|++++|..+++++.. .|.++..+..++.++.+.|++++|++.++++.+.+|++...
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 987644211 1122344555566999999999999987 77788889999999999999999999999999999998666
Q ss_pred HHHHHHHHhhcCCCCch-HHHHHHHHHHcc
Q 006281 610 ISAELFASLSSSSYPEP-ILLLLHALQEKC 638 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g 638 (652)
.++ ++..+...|+.++ +.++++++.+..
T Consensus 237 l~~-l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 237 LIN-LVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHH-HHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555 9999999999976 578888887653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.7e-16 Score=159.67 Aligned_cols=381 Identities=10% Similarity=-0.071 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhC-----C--CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIR-----E--CKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-----G- 291 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~- 291 (652)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666554321 0 112 3456666667777777777776666655431 0
Q ss_pred CCC-ChhhHHHHHHHHHc--cCCHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHH---hcCChhHHHHHHHHHHHcCCCCC
Q 006281 292 VAP-RTNDYREFILGLIV--ERRICEAKELGEVIVSGKFTIDDDVLNAL-IGSV---SSIDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 292 ~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~a~~~~~~m~~~~~~~~ 364 (652)
..+ ...++.....++.. .+++++|...|+...+..+. ++..+..+ ...+ ..++.++|++.+++..+.... +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 011 12233333333332 34566666666666654322 22222211 1111 124556666666665554322 3
Q ss_pred HHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 365 LSTLSNLSKNLC----KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (652)
Q Consensus 365 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 440 (652)
...+..+...+. ..++.++|.+.+++.....+. +..++..+...|...|++++|+..+++..+.... +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 344444333333 235566777777776665433 5566777777777777777777777777665322 3445554
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
+..+|...+... .... . ..........+.+++|...++...+.... +..++..+...+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 444432211000 0000 0 00000001112245555666655543221 33455555666666666
Q ss_pred HHHHHHHHHHhhhCCCCccHH--HHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARS--ILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
+++|.+.|+++++..+.+... ++..+... +...|++++|++.+++...-.+.... ..+....+.++++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---------~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---------KEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHHH
Confidence 666666666665554432221 12222222 23455666666666665552221111 1122233444555
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 598 WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+..+.+|.... .+..++.+|...|++++|++.+++..+.
T Consensus 421 ~~l~~~p~~~~-~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 421 MRLSKNGADSE-ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHCC-CTT-HHHHHHHHHHHHHHCC------------
T ss_pred HHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555665533 3333666666666666666666665554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.4e-18 Score=167.15 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+.+.|++++|+..|+++.+.... +..++..+..++...|++++|.+.|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4556888999999999999999999999987543 78899999999999999999999999999875 567899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPD-----------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTF 546 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 546 (652)
+|...|++++|...|+++.+.. |+ ...+..+...+...|++++|.++|++++..++. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998752 22 122334578899999999999999999987754 267889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCc
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (652)
+.++...|++++|++.++++.. .|.++..+..++.++...|++++|++.++++.+..|... ..+..++.+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI-RSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHCCCHH
Confidence 9999999999999999999877 777888999999999999999999999999999999884 45555999999999999
Q ss_pred hHHHHHHHHHHcc
Q 006281 626 PILLLLHALQEKC 638 (652)
Q Consensus 626 ~a~~~~~~~~~~g 638 (652)
+|.+.++++.+..
T Consensus 299 ~A~~~~~~al~~~ 311 (365)
T 4eqf_A 299 EAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.3e-16 Score=151.95 Aligned_cols=282 Identities=9% Similarity=0.117 Sum_probs=101.5
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHH
Q 006281 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (652)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 210 (652)
+.|++++|.++++++. ++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666666662 2346666666777777777776666442 355566666666666677777777
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 66555543 1224555666677777777777666653 255567777777777777777777777654
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (652)
Q Consensus 291 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (652)
..|..+..++.+.|++++|.+.+..+ .++.+|..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA----------------------------------------~~~~~Wk~ 182 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA----------------------------------------NSTRTWKE 182 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH----------------------------------------TCHHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc----------------------------------------CCchhHHH
Confidence 35666666777777666666655443 14566666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 450 (652)
++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++...... +-....|+-+..+|++- +
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~ 255 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 255 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-C
Confidence 6667777777777744433321 233334456777777777777777777766554 33555666665555543 2
Q ss_pred hhhHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006281 451 LRPAKKLWDQMFAS-GCSG------NLKTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 451 ~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 491 (652)
++...+.++..... +++| +...|..+.-.|...++++.|..
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33333333222221 2233 35567777778888888887765
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.9e-16 Score=153.83 Aligned_cols=258 Identities=10% Similarity=0.047 Sum_probs=205.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (652)
..+..|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 33445566666666666655432 35677777888889999999999999998876543 67788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSL--------------ME-ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (652)
|...++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+...|...
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 99999998876422 22223222 22 3677889999999999999875 56788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
|++++|.+.++++.+... .+..++..+...+...|++++|.+.|+++++..+. +...+..++.++...|++++|.+.+
T Consensus 186 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999987643 36788999999999999999999999999887765 6778999999999999999999999
Q ss_pred HHhhh-CCC------------CchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 564 RGLSS-DLG------------HSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 564 ~~~~~-~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+++.. .|. .+..+..++.++...|++++|...++++.+.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 98876 444 4667889999999999999999998765543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.9e-15 Score=152.75 Aligned_cols=329 Identities=11% Similarity=-0.042 Sum_probs=173.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCC---
Q 006281 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-----G--VAP-RTNDYREFILGLIVERRICEAKELGEVIVSGK--- 326 (652)
Q Consensus 258 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 326 (652)
......|+.+...+...|+.++|++.|++..+. + ..| ...+|..+..+|...|++++|...++.+....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334568999999999999999999999886542 1 122 34577888888999999999988887665320
Q ss_pred ---CCC-CHHHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCC
Q 006281 327 ---FTI-DDDVLNALIG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN---LCKRNKSDELVEVYKVLSANDY 396 (652)
Q Consensus 327 ---~~~-~~~~~~~l~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 396 (652)
..+ ...++...-. .+..+++++|+..|++..+.... +...+..+... +...++.++|++.+++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 001 1112211111 11223445555555544443211 12222222211 2223444444444444443322
Q ss_pred CcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006281 397 FTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (652)
Q Consensus 397 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 472 (652)
. +...+..+...+.. .|++++|...+++....... +..++..+...+...|++++|...+++..+.. +.+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 2 23333333322222 23344444444444443211 33344444444444444555544444444432 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (652)
+..+..+|...+... ..... ..........+.++.|...|+++.+.++. +...+..+...+..
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHH
Confidence 333333332111000 00000 00000001123467899999998887765 55678889999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCch----hHHHHHHH-HhccccHHHHHHHHHHHHhcCCCCc
Q 006281 553 RGHFLVATKLLRGLSSDLGHSD----SHVILLKS-LADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.|++++|++.++++....+.+. .+..++.. ....|++++|++.++++.+..|...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 9999999999999877333322 23344433 3578999999999999999999874
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=176.46 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKR---KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
..+|+++|++|++.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44788888888888888888888877653 467788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006281 477 ISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (652)
Q Consensus 477 ~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 517 (652)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888776 46777888888888888888888877765544
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.8e-17 Score=156.56 Aligned_cols=349 Identities=12% Similarity=0.123 Sum_probs=134.4
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 16 ~~~ld~A~~fae~~~~--------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE--------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4555666666655521 135556666666666666666666432 35556666666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
..++..++. .++..+.+.++.+|.+.|++.++.++++
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------- 118 (449)
T ss_dssp -----------------------------CHHHHTTTTT-----------------------------------------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------------------
Confidence 655555442 2334455556666666666655544331
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..+
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 234456666667777777777777777755 25777777777777777777777776 156777777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--CC
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ--ET 519 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g 519 (652)
+.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++ .+
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHH
Confidence 777777777777755444322 223334457777777777887777777776433 2244555555555554 34
Q ss_pred CHHHHHHHHHHhhhCCCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------------CCCCchhHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVML------ARSILSTFMISLCRRGHFLVATKLLRGLSS-------------DLGHSDSHVILL 580 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~~~l~ 580 (652)
+..+.++.|.. +.+++| +...|..++..|...++++.|....-+-+. .+.+.+.+...+
T Consensus 258 k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai 335 (449)
T 1b89_A 258 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 335 (449)
T ss_dssp HHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHH
Confidence 45555555542 222222 234577777778888888877654332211 233444444444
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.-|. +....++.-+.......-++ ...+..+.+.|++.-+..+++.+...
T Consensus 336 ~fyl--~~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 336 QFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHH--HHCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHH--hcCHHHHHHHHHHHHhccCc-----HHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4444 22223333333333222222 12344455666666666666655544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=172.16 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 440 (652)
-..||+++|++||+.|++++|.++|+.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHH
Q 006281 441 LMEACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD------ATTYTSLLE 513 (652)
Q Consensus 441 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~ 513 (652)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766553 455555555 3355554 445555666
Q ss_pred HHHcCC---------CHHHHHHHHHHh
Q 006281 514 GLCQET---------NLQAAFEVFNKS 531 (652)
Q Consensus 514 ~~~~~g---------~~~~a~~~~~~~ 531 (652)
.|.+.+ ..++-...|++-
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHHH
Confidence 666554 245666666643
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=5.6e-16 Score=140.03 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006281 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (652)
Q Consensus 436 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 515 (652)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++.++.... +...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444444555555555555555554443 334445555555555555555555555555543221 344444455555
Q ss_pred HcC-----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 516 CQE-----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 516 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
... |++++|...|+++++.++. +...+..+..++...|++++|++.++++.+ + .++..+..++.++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 555 7778888888877777665 666777777788888888888888877766 4 5666777788888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
...|++++|+..++++.+.+|+.....+ .++.++...|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~~~~~~~-~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPKDLDLRV-RYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCHHHHH-HHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888877754433 4777788888888887777653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-15 Score=142.02 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD--PD----VSFYNS 440 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 440 (652)
.+..+...+...|++++|...|+...+.. .+...+..+..++...|++++|+..+++..+.... |+ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555444 34445555555555555555555555554443110 01 244444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
+...+...|++++|.+.|+++.+. .|+. ..+...|++++|...++++...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 455555555555555555555443 2332 2233344445555555554443111 23344444444445555
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+++|...|++++...+. +..++..++.++...|++++|++.++++.. .|..+..+..++.++...|++++|++.++++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555554444433 344444445555555555555555554443 3334444444555555555555555555554
Q ss_pred HhcC
Q 006281 600 QESS 603 (652)
Q Consensus 600 ~~~~ 603 (652)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 4444
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.7e-15 Score=140.08 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCC----HHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGN----LKTY 473 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~ 473 (652)
...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+++..+.. ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578888899999999999999999998887 678889999999999999999999999988752 1112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (652)
..+..+|...|++++|...|+++.+. .|+. ..+...|++++|.+.+++++...+. +...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 89999999999999999999999875 3443 3456678899999999998887765 677888899999999
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
|++++|++.++++.. .|.++..+..++.++...|++++|+..++++.+.+|.... .+..++.++...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-AYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999877 6777888889999999999999999999999999988754 44459999999999999999999
Q ss_pred HHHHcc
Q 006281 633 ALQEKC 638 (652)
Q Consensus 633 ~~~~~g 638 (652)
++.+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887764
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=2.3e-15 Score=135.96 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=147.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++...+..+...+.+.|++++|+..|++..+.... +...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35566777777777888888888888877766432 56677777777778888888888888777764 55667777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 478 SKFSEV-----------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 478 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
.+|... |++++|+..|++.++.... +...+..+...+...|++++|+..|+++++.+ .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 9999999999998876433 57788888889999999999999999998887 478888899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..++...|++++|+..++++.+ +|.++..+..++.++...|++++|++.++++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999998877 777888888999999999999999998887654
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1e-14 Score=142.54 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR-LREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
...+..+...+.+.|++++|+..++++.+..+. +..+|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 345666777788999999999999999987655 78899999999999997 99999999999988654 7788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-CCCHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-ETNLQ 522 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~ 522 (652)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999986 678899999999999999999999999999987554 78899999999998 66657
Q ss_pred HH-----HHHHHHhhhCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCchhHHHHHHHHhccc--------
Q 006281 523 AA-----FEVFNKSVNHDVMLARSILSTFMISLCRRG--HFLVATKLLRGLSSDLGHSDSHVILLKSLADAR-------- 587 (652)
Q Consensus 523 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 587 (652)
+| ++.|++++..++. +...|..+..++...| ++++|++.+.++..++.++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 5889999998877 7889999999999988 689999999998446777778889999998874
Q ss_pred c-HHHHHHHHHHH-HhcCCCCcHHHHHHHHHHh
Q 006281 588 E-VEMAIEHIKWI-QESSPTMLQEISAELFASL 618 (652)
Q Consensus 588 ~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~ 618 (652)
+ +++|+++++++ .+.+|.. ...|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIR-KEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence 3 59999999999 8899876 34454455544
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=1.9e-13 Score=128.70 Aligned_cols=220 Identities=10% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34444444444444444444444444421 22334444444444 444444444444444432 334444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 478 SKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 478 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+++.+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 444555555544444432 33444444444444 445555555555444433 22334444444
Q ss_pred HHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-
Q 006281 550 LCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSS- 620 (652)
Q Consensus 550 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 620 (652)
|.. .+++++|++.+++..+. ..+..+..++.+|.. .+++++|++.++++.+.++ ...+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 444 44555555555444432 233444444455544 4555555555555544433 1222224444444
Q ss_pred ---CCCCchHHHHHHHHHHc
Q 006281 621 ---SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ---~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|.+.+++..+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 45555555555544444
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=2.4e-14 Score=134.87 Aligned_cols=245 Identities=14% Similarity=0.033 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEA 444 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~ 444 (652)
.+......+...|++++|...|+...+..+. +...+..+..+|...|++++|+..+++..+.+..|+ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444556677888888888888888876543 555788888888889999999999988887432222 2347788888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
+...|++++|.+.|++..+.. +.+...+..+...|...|++++|+..|++..+... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998888764 55667888888888889999999999888876522 2566666666344445689999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhC----CCC-----chhHHHHHHHHhccccHHHH
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGH---FLVATKLLRGLSSD----LGH-----SDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A 592 (652)
.+.|+++++..+. +...+..+..++...|+ +++|...++++.+. +.. ...+..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999888887765 56677778888888787 77788777776541 221 14566788888888999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 593 IEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++.++++.+.+|++. .....+..
T Consensus 241 ~~~~~~al~~~p~~~-~a~~~l~~ 263 (272)
T 3u4t_A 241 DAAWKNILALDPTNK-KAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHCTTCH-HHHHHHC-
T ss_pred HHHHHHHHhcCccHH-HHHHHhhh
Confidence 999999999888773 44443433
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=6.5e-15 Score=143.95 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
...|..+..++...|++++|+..++++++.... +...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 457888889999999999999999999988543 67889999999999997 999999999999986 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh-cCCHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-RGHFL 557 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 557 (652)
++...|++++|+..|+++++.... +...|..+..++...|++++|++.|+++++.++. +...|..+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999987544 7889999999999999999999999999999987 88899999999999 66657
Q ss_pred HH-----HHHHHHhhh-CCCCchhHHHHHHHHhccc--cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-------
Q 006281 558 VA-----TKLLRGLSS-DLGHSDSHVILLKSLADAR--EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS------- 622 (652)
Q Consensus 558 ~A-----~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 622 (652)
+| ++.++++.. +|.+...|..++.++...| ++++|++.++++ +.+|+. ...+..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccch
Confidence 77 478888776 8888999999999999888 699999999998 778877 455556999998874
Q ss_pred -C-CchHHHHHHHH-HHc
Q 006281 623 -Y-PEPILLLLHAL-QEK 637 (652)
Q Consensus 623 -~-~~~a~~~~~~~-~~~ 637 (652)
+ +++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 2 58999999988 443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.6e-14 Score=136.12 Aligned_cols=235 Identities=10% Similarity=0.043 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILIS 478 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 478 (652)
..+......+...|++++|+..|++..+.... +...+..+..++...|++++|.+.+++..+..-.++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 35566778899999999999999999987433 455888899999999999999999999998431122 334889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.|...|++++|+..|++..+.... +...+..+...|...|++++|.+.|+++++..+. +...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986433 5678999999999999999999999999888665 67788888844555569999
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhcccc---HHHHHHHHHHHHhcC---CCC----cHHHHHHHHHHhhcCCCCchH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADARE---VEMAIEHIKWIQESS---PTM----LQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a 627 (652)
|++.++++.+ .|.....+..++.++...|+ +++|+..++++.+.. |+. ....+..++..|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999987 67777888899999998888 888999999988764 432 124566699999999999999
Q ss_pred HHHHHHHHHcc
Q 006281 628 LLLLHALQEKC 638 (652)
Q Consensus 628 ~~~~~~~~~~g 638 (652)
.+.++++.+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999888763
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=7.8e-15 Score=135.60 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
....|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 444666677777778888888888888776533 256777777778888888888888888887764 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.|...|++++|.+.++++.+... .+...+..+...+...|++++|...++++++..+. +...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888877543 26677888888888888888888888888877654 66778888888889999999
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
|++.++++.. .+..+..+..++.++...|++++|++.++++.+.+|+.....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 9999888876 566677888889999999999999999999999888875433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=4.2e-14 Score=131.46 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45667777777888888888888888776642 256677777778888888888888888877764 4567777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.|+++++..+. +...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632344 4556777777888888888888888888776654 56677788888888888888
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
|.+.++++.. .+.....+..++..+...|++++|.+.++++.+..|+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 8888888766 555666777788888888888888888888888887763
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=6e-14 Score=130.41 Aligned_cols=201 Identities=9% Similarity=-0.026 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567888888999999999999999999875 567889999999999999999999999999976433 67888999999
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
+...|++++|.++|++++..+..| +...+..++.++...|++++|.+.++++.. .|..+..+..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998832223 567788899999999999999999999877 667788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++.+..|... ..+..++..+...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999998774 445558999999999999999999998763
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.2e-13 Score=125.71 Aligned_cols=206 Identities=10% Similarity=-0.017 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 445666777777777777777777777776532 246667777777777777777777777777654 446667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 479 KFSEV-GEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 479 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
.|... |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++++..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 777777777777776322332 456666777777777777777777777766554 566677777777777777
Q ss_pred HHHHHHHHHhhh-CC-CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 557 LVATKLLRGLSS-DL-GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++|.+.++++.. .| ..+..+..++..+...|+.++|..+++.+.+..|+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 777777777665 45 5556666666666777777777777777777777663
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=5.3e-13 Score=125.64 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYN 439 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 439 (652)
+...+..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45666777778889999999999999988843 56788889999999 999999999999999875 678888
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006281 440 SLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSL 511 (652)
Q Consensus 440 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 511 (652)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88899999 999999999999999864 67888999999998 999999999999999875 56677888
Q ss_pred HHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 006281 512 LEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 512 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 583 (652)
...|.. .+++++|...|+++.+.+ +...+..+..+|.. .+++++|++.+++..+.. .+..+..++.+|
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 888887 899999999999998875 45678889999999 999999999999988743 367888999999
Q ss_pred hc----cccHHHHHHHHHHHHhcCCCC
Q 006281 584 AD----AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 584 ~~----~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.. .+++++|++.++++.+.+|..
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 98 999999999999999998765
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=1.3e-11 Score=128.86 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc---HHHHHHHH
Q 006281 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK---LGQVLSML 212 (652)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~ 212 (652)
.+-+..|+..+.... -|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ .+.+.++|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334444444444432 36667777777777777777777777777665 23344455555555555566 66666777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHccC
Q 006281 213 DEVRKRENSMINGSVIAVLIIHGFCKGK 240 (652)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 240 (652)
++.... ...+++..+|...+....+.+
T Consensus 127 eRal~~-~~~~~sv~LW~~Yl~f~~~~~ 153 (679)
T 4e6h_A 127 ARCLSK-ELGNNDLSLWLSYITYVRKKN 153 (679)
T ss_dssp HHHTCS-SSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHhc
Confidence 666655 111244555655554443333
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=8.1e-14 Score=140.87 Aligned_cols=378 Identities=10% Similarity=-0.008 Sum_probs=235.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCH---HHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV---EEAFKVLDELRIRECKPDFIAYRIVAEEF 271 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 271 (652)
+...+.+.|++++|.+.|++..+. + +...+..|...|...|+. ++|.+.|++..+. +...+..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-G----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 455666778888888888877765 3 233334455566666766 7777777776643 344444555534
Q ss_pred HhcC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 006281 272 KLMG-----SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (652)
Q Consensus 272 ~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (652)
...+ ++++|...|++..+.|... .+..+...|...+.... .
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~-------------------------------~ 125 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFP-------------------------------N 125 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCT-------------------------------T
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCC-------------------------------C
Confidence 4433 5666777766666644322 33333333332222111 1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVYKVLSANDYFTDMESYNVMVSFLCTSG---RLREA 419 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 419 (652)
.++.+.+......|. ......+...|...+.++. +..+++..... ++..+..+...|...| +.++|
T Consensus 126 ~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 126 VNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp CCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHH
Confidence 334444555444443 2334445555666664444 44444444332 4448888899999999 89999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHH
Q 006281 420 YGVIQEMKRKGLDPDVSFYNSLMEACCRE----DLLRPAKKLWDQMFASGCSGNLKTYNILISK-F--SEVGEIEGALRL 492 (652)
Q Consensus 420 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~ 492 (652)
+..|++..+.|.. +...+..+...|... +++++|.+.|+... . -+...+..|... | ...+++++|++.
T Consensus 199 ~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 199 LKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9999999988743 555556676777554 78999999999987 3 455666667666 4 468999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCC-----CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQET-----NLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLL 563 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 563 (652)
|++..+.| +...+..|...|. .| ++++|.+.|+++. . -++..+..|...|.. ..++++|.+++
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 99999876 6677777777776 45 9999999999887 2 256677788888776 34899999999
Q ss_pred HHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 564 RGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++..+ .+++.+...|+..|.. ..+.++|...++++.+.++........ .+......++.++|..+.++..+.
T Consensus 346 ~~Aa~-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~-~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 346 LTAAR-NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT-QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHT-TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99876 4567788888888864 468999999999999987654333333 223334456778888888877765
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=2.5e-14 Score=132.12 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45667778888999999999999999999864 667889999999999999999999999999976433 6788899999
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
.+...|++++|.+.++++++..+. +...+..++..+...|++++|.+.++++.. .+..+..+..++.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999987765 677899999999999999999999999877 677788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++.+..|... ..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHA-DAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccH-HHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999874 455559999999999999999999988753
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.6e-13 Score=124.93 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45678888899999999999999999999875 56788999999999999999999999999997643 36788899999
Q ss_pred HHHcC-CCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHH
Q 006281 514 GLCQE-TNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 514 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
.+... |++++|...++++++....| +...+..++.++...|++++|++.++++.. .|..+..+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 99999999999998832222 467788999999999999999999999877 6777888999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSP-TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|++.++++.+..| .. ...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999998 65 444555888889999999999999988765
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.3e-14 Score=135.29 Aligned_cols=243 Identities=11% Similarity=-0.065 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHHHhCCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 379 NKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
|++++|+..++.+.+.... .+..++..+...+...|++++|...|+++.+.... +..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555555543211 13345555566666666666666666666555322 4555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+.|+++.+.. +.+...+..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+++++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666666543 334556666666666666666666666666653 2332233333333445566666666665555543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG-----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+. +...+ .++..+...++.++|.+.++++....+ .+..+..++.++...|++++|+..++++.+.+|.....
T Consensus 175 ~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 251 (275)
T 1xnf_A 175 DK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE- 251 (275)
T ss_dssp CC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-
T ss_pred Cc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-
Confidence 32 22222 244455555666666666665544211 13445566666666666666666666666666654322
Q ss_pred HHHHHHHhhcCCCCchHHHHH
Q 006281 611 SAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~ 631 (652)
...++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 233444555555555444
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=9.8e-14 Score=140.27 Aligned_cols=275 Identities=11% Similarity=0.049 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 421 (652)
+.++|+..|+...+.|... .+..+...|...+.. ..+.+.+....+.| +...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4566777777766655433 444455555554443 33555555555444 44577788888888885555444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 006281 422 VIQEMKRKGLDPDVSFYNSLMEACCRED---LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV----GEIEGALRLFH 494 (652)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~ 494 (652)
....+.+.-...++..+..+...|...| +.++|.+.|+...+.| +++...+..|...|... +++++|+..|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333322211223347888888899999 9999999999999988 67777767788888655 79999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHH-H--HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHh
Q 006281 495 NMLEKGVAPDATTYTSLLEG-L--CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-----HFLVATKLLRGL 566 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 566 (652)
+.. .| +...+..+... + ...+++++|.+.|++..+.+ ++..+..+...|. .| ++++|++++++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 987 33 45566666666 4 46899999999999999877 5667777888887 55 999999999999
Q ss_pred hhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc----CCCCchHHHHHHHHHHcc
Q 006281 567 SSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSS----SSYPEPILLLLHALQEKC 638 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 638 (652)
. +.++.+...++..|.. ..++++|+..++++.+.+.. ...++ |+..|.. ..+.++|...+++..+.|
T Consensus 314 a--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~--~A~~~-Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN--SADFA-IAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT--THHHH-HHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH--HHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 8 7888999999988876 44999999999999886542 34444 8877764 458899999999988876
Q ss_pred c
Q 006281 639 L 639 (652)
Q Consensus 639 ~ 639 (652)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=9.4e-14 Score=131.01 Aligned_cols=245 Identities=10% Similarity=-0.013 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+++++|+..++++.+.... .+...+..+...+...|++++|...|+++.+.... +..+|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4567777777777765321 13566778888899999999999999999887554 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
..|+++.+.... +..++..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999987433 57788899999999999999999999999863 444444455556677799999999998887653
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (652)
.++...+ .++..+...++.++|.+.+++++...+.. +...+..++.++.+.|++++|...++++.... +..+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 250 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHNFV 250 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTTCH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chhHH
Confidence 2343344 47777888889999999999887765432 25678889999999999999999999998842 22234
Q ss_pred HHHHHHhccccHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~ 596 (652)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4567788889999998877
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=7.1e-11 Score=123.26 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=155.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV-EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (652)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 427 (652)
+..+|++.+.. ++-+...|...+..+...|+.+.|. .+|+......+ .+...|-..+....+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666654 3336777777777777888888886 88888876432 356667777888888888999998888877
Q ss_pred HcCC---------CCC------------HHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-C
Q 006281 428 RKGL---------DPD------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEV-G 484 (652)
Q Consensus 428 ~~~~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g 484 (652)
.... .|+ ..+|...+....+.|+.+.|..+|....+. + ......|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 5410 131 235777777777788888888888888765 2 12233343333332333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
+++.|..+|+..++. +.-+...|...+......|+.+.|..+|++++...+.+ ...+|..++..-.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 578888888888875 33355666677777777888888888888887766532 445788888888888888888888
Q ss_pred HHHhhhCCCCchhHHHHHHHH
Q 006281 563 LRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~ 583 (652)
.+++.+..++.+....++.-|
T Consensus 564 ~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHh
Confidence 888877333333333444333
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.5e-14 Score=141.32 Aligned_cols=263 Identities=14% Similarity=0.055 Sum_probs=117.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHH
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDM----ESYNVMVSFLCTSGRLREAYGVIQEMKRK----GL-DPDVSFYNSLME 443 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~ 443 (652)
..+...|++++|...|+++.+.... +. ..+..+...|...|++++|+..+++..+. +. .....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344445555555555554443221 11 23444445555555555555555544322 00 011233444444
Q ss_pred HHHhcCChhhHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC--
Q 006281 444 ACCREDLLRPAKKLWDQMFAS----G-CSGNLKTYNILISKFSEVGE-----------------IEGALRLFHNMLEK-- 499 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~-- 499 (652)
.+...|++++|...+++..+. + .+....++..+...|...|+ +++|++.+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544432 0 01122344445555555555 55555555444321
Q ss_pred --CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 500 --GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 500 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
+..+ ...++..+...+...|++++|.+.+++++..... .....+..+..+|...|++++|++.++++.. .+
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1000 1224444555555555555555555554432211 0112444555555555555555555554433 10
Q ss_pred --CC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 571 --GH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-----LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 571 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.. ...+..++.++...|++++|++.++++.+..+.. ....+..++.+|...|++++|.+++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 2234455555555555555555555554432111 122333355555555555555555555443
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.3e-13 Score=118.47 Aligned_cols=168 Identities=12% Similarity=0.097 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++........ +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555555555555555555555543 344555555555555666666666665555543222 34445555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+...++++.+.+.++++....+. +...+..+..++.+.|++++|++.++++.+ +|.++..+..++.++.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 55566666666666655555443 455555566666666666666666665554 5555555666666666666666666
Q ss_pred HHHHHHHhcCCC
Q 006281 594 EHIKWIQESSPT 605 (652)
Q Consensus 594 ~~~~~~~~~~~~ 605 (652)
+.++++.+.+|.
T Consensus 162 ~~~~~al~~~p~ 173 (184)
T 3vtx_A 162 KYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHhCCcc
Confidence 666666665554
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=6.6e-14 Score=142.49 Aligned_cols=210 Identities=12% Similarity=0.019 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
+++++..+++..... ..+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 12455566666666666666 66666666666553 3445666666666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcC---------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------CCHH
Q 006281 495 NMLEKGVAPDATTYTSLLEGLCQE---------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR--------GHFL 557 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 557 (652)
+..+. .|+...+..+...+... |++++|.+.|+++++.++. +...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66644 34555666666666666 6666666666666666554 555666666666666 6666
Q ss_pred HHHHHHHHhhh-CC---CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHH
Q 006281 558 VATKLLRGLSS-DL---GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 558 ~A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+|++.++++.. +| ..+..+..++.+|...|++++|++.++++.+.+|+.... +..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a-~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP-QQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 66666666655 55 555666666666666666777777776666666665333 333666666666666666543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=4.1e-13 Score=117.92 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
.+...|..+...|...|++++|++.|++.++.... +..++..+..+|.+.|++++|...++++....+. +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 46778999999999999999999999999987544 6788999999999999999999999999888776 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCch
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEP 626 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (652)
..+...++++.|.+.+.++.. .|.+...+..++.++.+.|++++|++.++++.+.+|.... .+..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR-AYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh-HHHHHHHHHHHCCCHHH
Confidence 999999999999999999877 7778889999999999999999999999999999998854 45559999999999999
Q ss_pred HHHHHHHHHHcc
Q 006281 627 ILLLLHALQEKC 638 (652)
Q Consensus 627 a~~~~~~~~~~g 638 (652)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=3.5e-12 Score=122.13 Aligned_cols=219 Identities=9% Similarity=0.037 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 006281 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCT-------SGRL-------REAYGVIQEMKR-KGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~ 446 (652)
+.|..+|++.....+. +...|..++..+.. .|++ ++|..+|++..+ ... -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 5666777777665433 56667766666653 3664 777777777776 322 24556777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-cCCCHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGN-LK-TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC-QETNLQA 523 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 523 (652)
+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++.++... ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777764 333 33 677777777777777777777777776432 23333433322221 2577777
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC--CchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG--HSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
|.++|+++++..+. +...|..++..+.+.|++++|+.+|+++... ++ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766554 5667777777777777777777777777663 21 234566667777777777777777777
Q ss_pred HHhcCCCC
Q 006281 599 IQESSPTM 606 (652)
Q Consensus 599 ~~~~~~~~ 606 (652)
+.+..|+.
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 77777753
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=137.95 Aligned_cols=293 Identities=12% Similarity=0.031 Sum_probs=176.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFL 410 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~ 410 (652)
..+..|++++|+..|++..+.+.... ...+..+...+...|++++|...+++.... +..| ...++..+...|
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34556778888888877776532211 245666667777777888877777765432 1111 234566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc-
Q 006281 411 CTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDL--------------------LRPAKKLWDQMFAS- 464 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~- 464 (652)
...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777888887777776654210 11 2356666677777777 77777777766542
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 465 ---GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 465 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+. +....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++++...
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 11234566677777777777777777777664311 112 1256666777777777777777777765432
Q ss_pred CC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 536 VM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 536 ~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.. ....++..++..+...|++++|.+.++++.. ...+ ...+..++.++...|++++|++.++++.+..
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 0134566677777777777777777776644 1111 2345567777777777777777777777776
Q ss_pred CCCc-----HHHHHHHHHHhhcCCCCchHHHHH
Q 006281 604 PTML-----QEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 604 ~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+... ...+..++.++...|+.......+
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 5554 223444555555555555444333
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=3.1e-13 Score=131.56 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=179.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDYFTD----MESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSL 441 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l 441 (652)
....+...|++++|...|+++.+.... + ...+..+...|...|++++|...+++.... +..| ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344566777777777777777665332 2 346667777777778888887777765432 1111 23456667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGC-SGN----LKTYNILISKFSEVGE--------------------IEGALRLFHNM 496 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m 496 (652)
...+...|++++|...+++..+..- .++ ..++..+...|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777778888888887777654310 111 3366777777777888 88888877776
Q ss_pred HHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 497 LEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV-----MLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 497 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.+. +..| ...++..+...+...|++++|.+.+++++.... .....++..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 1111 134567777788888888888888888765321 112336777888888899999998888876
Q ss_pred hh---CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 567 SS---DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-----LQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 567 ~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
.. ...+ ...+..++.++...|++++|+..++++.+..+.. ....+..++.+|...|++++|.+.++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 54 1111 3356678888889999999999998887653321 2334556888888999999999999887
Q ss_pred HHc
Q 006281 635 QEK 637 (652)
Q Consensus 635 ~~~ 637 (652)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 765
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.1e-11 Score=118.57 Aligned_cols=216 Identities=9% Similarity=0.062 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhC-CCCcCHHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC-------KRNKS-------DELVEVYKVLSAN-DYFTDMESYNVMVSFLC 411 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 411 (652)
++|...|++.+... +-+...|..+...+. +.|++ ++|..+|++..+. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56677777776643 235556666665554 34665 7788888877763 332 5567777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPD-VS-FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS-EVGEIEG 488 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 488 (652)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 788888888888877765 333 22 67777777777788888888888777654 344444443333322 2577888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VML--ARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 489 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
|..+|++.++.... +...|..++..+.+.|++++|..+|++++... ..| ...+|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877764222 56677777777777788888888888777753 233 355677777777777888888887777
Q ss_pred hhh
Q 006281 566 LSS 568 (652)
Q Consensus 566 ~~~ 568 (652)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=6.8e-13 Score=135.00 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=177.6
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 006281 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL-REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (652)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 459 (652)
++.+...++....... .+...+..+..++...|++ ++|+..|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666655433 3777888888889999999 9999999988877433 57788888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC--------CCHH
Q 006281 460 QMFASGCSGNLKTYNILISKFSEV---------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--------TNLQ 522 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 522 (652)
+..+. .|+...+..+..+|... |++++|++.|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98876 46678888888889888 9999999999999876433 677888888888888 8999
Q ss_pred HHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+|.+.|+++++.++. -+...+..+..+|...|++++|.+.++++.+ +|..+..+..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999887761 2788899999999999999999999999877 7778888899999999999999998876544
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=6e-13 Score=133.40 Aligned_cols=296 Identities=14% Similarity=0.011 Sum_probs=209.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCH---HHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD---DVLNALI-GSVSSIDPRSAIVFFNFMIEK----GRVP-TL 365 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~-~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 365 (652)
....+......+...|++++|...++.+.+....... .++..+. ..+..|++++|...+++.... +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556677888899999999999998876443221 2333333 335568999999999987543 2112 24
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGR--------------------LREAY 420 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~ 420 (652)
..+..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 56777778889999999999999988765211 11 3377888889999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHH
Q 006281 421 GVIQEMKRK----GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASG-CSGN----LKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 421 ~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~ 490 (652)
..+++.... +..| ...++..+...+...|++++|.+.+++..+.. -.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876543 1111 13467788888999999999999999887641 0122 237888888999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHH
Q 006281 491 RLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 491 ~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
..+++..+.... ++ ..++..+...|...|++++|.+.+++++..... ....++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753111 11 456778888899999999999999988764211 12456788899999999999999
Q ss_pred HHHHHhhh---CCCC----chhHHHHHHHHhccccHH
Q 006281 561 KLLRGLSS---DLGH----SDSHVILLKSLADAREVE 590 (652)
Q Consensus 561 ~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~ 590 (652)
+.+++..+ .... ...+..++.++...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988754 1111 224445666666666554
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.3e-12 Score=138.12 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
+.+..+|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|+++++.++. +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 344677888888888888888888888888875333 5677888888888888888888888888887766 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCc
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (652)
..+|.+.|++++|++.++++.+ +|.....+..++.+|...|++++|++.++++.+.+|+.....++ ++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~-L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN-LAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH-HHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh-hhhHHHhcccHH
Confidence 8888888888888888888877 77778888888888888888888888888888888887544444 888888888888
Q ss_pred hHHHHHHHHHHc
Q 006281 626 PILLLLHALQEK 637 (652)
Q Consensus 626 ~a~~~~~~~~~~ 637 (652)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=6.3e-12 Score=124.73 Aligned_cols=231 Identities=8% Similarity=0.024 Sum_probs=171.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CC----CCCHHHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS--GC----SGNLKTYN 474 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 474 (652)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778889999999999988764 1111 2356788888889999999999999888764 11 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCCCccHHHHH
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILS 544 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 544 (652)
.+..+|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++++. .+......++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999888753111 12 24678888899999999999999999887 34233567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC---CCCc---hhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSD---LGHS---DSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELF 615 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (652)
.++.++.+.|++++|.+.+++...- ..++ ..+..++..+...|+ +++|+..+++.. ........+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 8999999999999999999887541 1122 234568888888888 778888877762 1122244555699
Q ss_pred HHhhcCCCCchHHHHHHHHHHcc
Q 006281 616 ASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..|...|++++|.+++++..+..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=2.9e-12 Score=127.19 Aligned_cols=233 Identities=7% Similarity=-0.048 Sum_probs=179.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-P-----DVSFYN 439 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p-----~~~~~~ 439 (652)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677889999999999998764 1111 3457888999999999999999999987754111 1 135678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GV-APDATTYT 509 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 509 (652)
.+...|...|++++|.+.+++..+. +-. ....++..+..+|...|++++|++.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988754 101 11247888999999999999999999998862 22 22456788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCchhHHHHHHH
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHD----VMLARSILSTFMISLCRRGH---FLVATKLLRGLSSDLGHSDSHVILLKS 582 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~l~~~ 582 (652)
.+...+...|++++|...+++++... -......+..+...+...|+ +++|+.++++....+.....+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999887642 11122335678888889999 888888888875444445567789999
Q ss_pred HhccccHHHHHHHHHHHHhcC
Q 006281 583 LADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|...|++++|.+.++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.1e-12 Score=131.89 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=193.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcCHHHHHHHHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTL----STLSNLSKNLCKRNKSDELVEVYKVLSAN----DY-FTDMESYNVMVSFLC 411 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 411 (652)
+..|++++|+..|++..+.+.. +. ..+..+...|...|++++|...+++..+. +. .....++..+...|.
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 4455666666666666655322 22 45667777788888888888888876543 11 123457788888999
Q ss_pred hcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCC-----------------hhhHHHHHHHHHHc----C
Q 006281 412 TSGRLREAYGVIQEMKRKG----LD-PDVSFYNSLMEACCREDL-----------------LRPAKKLWDQMFAS----G 465 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~~~~----~ 465 (652)
..|++++|...+++..+.. .. ....++..+...+...|+ +++|.+.+++..+. +
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998876541 11 124467788888889999 89998888877643 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--
Q 006281 466 C-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-- 537 (652)
Q Consensus 466 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 537 (652)
. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++++.....
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 1 122357888889999999999999999988753110 12 237788889999999999999999988764321
Q ss_pred ---ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 538 ---LARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 538 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
....++..+..++...|++++|.+.++++... .. ....+..++.++...|++++|.+.++++.+..+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 12467888999999999999999999987551 11 12367789999999999999999999999887654
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3.3e-12 Score=124.21 Aligned_cols=265 Identities=14% Similarity=0.048 Sum_probs=188.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHh
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFLCT 412 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 412 (652)
+..|++++|+..|++..+...... ...+..+...+...|++++|...+++..+. +.. ....++..+...|..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 445566666666666665432211 345667777788888888888888776532 111 124577788888999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc---
Q 006281 413 SGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDL--------------------LRPAKKLWDQMFAS--- 464 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~--- 464 (652)
.|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988765311 112 3367778888888888 88898888876543
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 465 -GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 465 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
+. .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++++.....
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 11 12245678888899999999999999998875311 011 236778888899999999999999987653211
Q ss_pred -----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 538 -----LARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 538 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
....++..+...+...|++++|.+.++++... ... ...+..++.++...|++++|...++++.+..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12456788899999999999999999887541 111 235668999999999999999999999887654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.6e-13 Score=127.67 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------C-C
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS------G-C 466 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 466 (652)
.++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555554442 11112334455555555555555555555555432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-----
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK------GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----- 534 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 534 (652)
+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.++|++++..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122345555566666666666666666665542 1111 2334555566666666666666666665543
Q ss_pred -C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----------CCCchhHH------HHHHHHhccccHHHHHHHH
Q 006281 535 -D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD----------LGHSDSHV------ILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 535 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~------~l~~~~~~~g~~~~A~~~~ 596 (652)
+ ......++..++.++...|++++|.+.++++... +.....+. .....+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 1112344566666666666666666666665431 11111111 2222223344455555566
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 597 KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+++....|.. ...+..++.+|.+.|++++|.+++++..+.
T Consensus 268 ~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDSPTV-TTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666555544 334444777777777777777777766553
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=4.9e-13 Score=128.56 Aligned_cols=241 Identities=14% Similarity=0.048 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN-------DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK------GL 431 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~ 431 (652)
..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777788888888888888887762 22234567788888889999999999998887754 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 006281 432 DP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS------GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---- 499 (652)
Q Consensus 432 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 499 (652)
.| ...++..+...+...|++++|.+.++++.+. +. +.....+..+...|...|++++|+++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3456778888888999999999999888764 21 223556788888899999999999999988764
Q ss_pred --CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-------CCc-------cHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 500 --GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-------VML-------ARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 500 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
+..| ...++..+...|...|++++|.+.++++++.. ..+ ....+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 24467788888999999999999999887531 111 112233333344455666667777
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
++.... .+.....+..++.+|.+.|++++|++.++++.+..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777665 3445567889999999999999999999999887553
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=3.2e-11 Score=109.85 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=156.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36678888999999999999999999999987654677777778899999999999999999999875 55678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDA-------TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMIS 549 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 549 (652)
.+|...|++++|+..|++..+.... +. ..|..+...+...|++++|.+.|+++++.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999875332 34 457778888889999999999999988775420 24567778888
Q ss_pred HHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 550 LCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
+...|+ ..++++... +.....+ ........+.+++|+..++++.+.+|++..
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 766554 334444442 2222233 223344567899999999999999998843
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1e-11 Score=108.96 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++++..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3455556666666666666666666654322 24556666666666777777777777766665543 555666667777
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
...|++++|.+.++++.. .|..+..+..++.++...|++++|++.++++.+..|... ..+..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-KVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776655 455566666777777777777777777777777766653 333447777777777777777
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77766654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=5.2e-11 Score=117.81 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CC---C-CCHHHHHH
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS--GC---S-GNLKTYNI 475 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~~~~~ 475 (652)
...+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+++..+. .. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444555666666666655543210 111 234555555566666666666666555432 00 0 11345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCCCccHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILST 545 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 545 (652)
+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|.+.|++++. ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 666666666666666666665532 1111 123455566666666777777776666665 4433 2555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC---CCCc---hhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSD---LGHS---DSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++.++.+.|++++|.+.+++.... ..++ ..+..+...+...|+ +++|+..+++... .......+..++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 666677777777777776665441 1111 123345555555555 5566665554211 1111233444667
Q ss_pred HhhcCCCCchHHHHHHHHHH
Q 006281 617 SLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 617 ~~~~~g~~~~a~~~~~~~~~ 636 (652)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777766654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.5e-11 Score=107.78 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555556666666555555432 33455555666666666666666666666655422 24555666666666
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
..|++++|.+.++++....+. +...+..++.++...|++++|.+.++++.. .+..+..+..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666655443 555666666677777777777777776655 455556666777777777777777777
Q ss_pred HHHHHhcCCCC
Q 006281 596 IKWIQESSPTM 606 (652)
Q Consensus 596 ~~~~~~~~~~~ 606 (652)
++++.+..|+.
T Consensus 167 ~~~~~~~~~~~ 177 (186)
T 3as5_A 167 FKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHcCCCc
Confidence 77776665544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.5e-11 Score=112.01 Aligned_cols=195 Identities=9% Similarity=-0.050 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 433 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
.|+..+......+...|++++|.+.|+...+..-+++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888888999999999999999888752277777777888899999999999999999876433 566788888
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC--CchhHHHHHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLAR-------SILSTFMISLCRRGHFLVATKLLRGLSS-DLG--HSDSHVILLKS 582 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~~ 582 (652)
..+...|++++|.+.|+++++..+. +. ..|..+...+...|++++|++.++++.+ +|. .+..+..++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 8899999999999999998887765 44 4577788888889999999999998877 555 56777788888
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+...|+ ..++++....+... ..+... .....|.+++|+..+++..+.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~-~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNK-EKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCH-HHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccCCH-HHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 876554 34556666655442 223212 234456789999999988876
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.6e-10 Score=114.20 Aligned_cols=311 Identities=9% Similarity=-0.032 Sum_probs=217.0
Q ss_pred CCCChhhHHHHHHHH--HccCCHHHHHHHHHHHHcCC--CCCCH--HHHHHHHHH---HhcCChhHHH---------HHH
Q 006281 292 VAPRTNDYREFILGL--IVERRICEAKELGEVIVSGK--FTIDD--DVLNALIGS---VSSIDPRSAI---------VFF 353 (652)
Q Consensus 292 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~--~~~~~l~~~---~~~~~~~~a~---------~~~ 353 (652)
+.|+..+-..+-..| +..+++++|..+++.+.... ...+. ..|-.++.. +..++...+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344444444555554 78999999999999876532 22232 334444432 1123333333 566
Q ss_pred HHHHHcCCCCCH--H--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 354 NFMIEKGRVPTL--S--TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-T----DMESYNVMVSFLCTSGRLREAYGVIQ 424 (652)
Q Consensus 354 ~~m~~~~~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~ 424 (652)
+.+.....+.+. . .+......+...|++++|...|++..+.... + ...++..+...|...|+++.|+..++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665432211111 1 1222334567899999999999998764211 1 24578889999999999999999999
Q ss_pred HHHHcCC-CC-----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 425 EMKRKGL-DP-----DVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 425 ~~~~~~~-~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+..+... .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8775421 11 2456788889999999999999999988764 211 12457888999999999999999999
Q ss_pred HHHHH-----CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC----CccHHHHHHHHHHHHhcCC---HHHHHH
Q 006281 494 HNMLE-----KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV----MLARSILSTFMISLCRRGH---FLVATK 561 (652)
Q Consensus 494 ~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~ 561 (652)
++..+ .... ...++..+...+.+.|++++|...++++++... ......+..+...+...|+ +.+|+.
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99986 4322 367788899999999999999999999877421 2223456667777778888 888888
Q ss_pred HHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.+++....+.....+..++..|...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888754433344566789999999999999999999987653
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.2e-11 Score=130.63 Aligned_cols=165 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456666666666666666666666666653 344566666777777777777777777776654322 45666777777
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
|...|++++|++.|+++++.++. +...+..+..+|.+.|++++|++.++++.+ +|..+..+..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 77777777777777777766655 566677777777777777777777777666 6666677777777777777777777
Q ss_pred HHHHHHHhc
Q 006281 594 EHIKWIQES 602 (652)
Q Consensus 594 ~~~~~~~~~ 602 (652)
+.++++.+.
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=2e-10 Score=113.49 Aligned_cols=289 Identities=12% Similarity=0.013 Sum_probs=190.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCH----HHHHHHHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLS----TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TDM----ESYNVMVSFLC 411 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~ 411 (652)
+..|++++|...+++........+.. .+..+...+...|+++.|...+++....... .+. .++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 45688999999988877754333332 4455566777889999998888876643111 121 23566777888
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--C--CHHHHHHHHHHH
Q 006281 412 TSGRLREAYGVIQEMKRK----GLD--PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCS--G--NLKTYNILISKF 480 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~----~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~ 480 (652)
..|++++|...+++.... +.. |. ...+..+...+...|++++|...+++..+..-. + ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 889999999888887653 211 22 345566777788889999999988888765211 1 235677777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HhhHH----HHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPD--ATTYT----SLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLC 551 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 551 (652)
...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+..++.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 888999999998888775321111 11111 22334668889999999888877654321 1234567778888
Q ss_pred hcCCHHHHHHHHHHhhhC---CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 552 RRGHFLVATKLLRGLSSD---LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
..|++++|.+.++++... .+. ...+..++.++...|+.++|...++++....+.. .....+...|
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~------g~~~~~~~~g-- 336 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT------GFISHFVIEG-- 336 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------CCCHHHHTTH--
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc------cHHHHHHHcc--
Confidence 889999988888876441 111 1245567778888889999999888888775432 1333344555
Q ss_pred chHHHHHHHHHHc
Q 006281 625 EPILLLLHALQEK 637 (652)
Q Consensus 625 ~~a~~~~~~~~~~ 637 (652)
+....+++++...
T Consensus 337 ~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 337 EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5666677766554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=4.5e-10 Score=110.95 Aligned_cols=298 Identities=10% Similarity=-0.009 Sum_probs=194.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCCCCHH----HHHHH-HHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFTIDDD----VLNAL-IGSVSSIDPRSAIVFFNFMIEKGR-VPT----LSTLSNLS 372 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l-~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~ 372 (652)
...+...|++++|...++.........+.. .++.+ ......|++++|...+.+..+... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 335566899999999988887765433332 12222 223456899999998888765321 112 22345666
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 006281 373 KNLCKRNKSDELVEVYKVLSAN----DYF--T-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP----DVSFYNSL 441 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l 441 (652)
..+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++........ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788889999999988887643 221 2 23456667788888999999999998877653221 23457777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGN-LKTYN-----ILISKFSEVGEIEGALRLFHNMLEKGVAPD---ATTYTSLL 512 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 512 (652)
...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888889999999999988875411111 11121 233447788999999999888775432211 23456777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCC----CCccH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccc
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHD----VMLAR-SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (652)
..+...|++++|...+++++... ..++. ..+..+..++...|+.++|...+++....... ......+...|
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~----~g~~~~~~~~g 336 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR----TGFISHFVIEG 336 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HCCCHHHHTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc----ccHHHHHHHcc
Confidence 88888899999999998876532 22122 35666778888899999999988887652100 11223444555
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 006281 588 EVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~ 606 (652)
+....+++.+....|..
T Consensus 337 --~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 337 --EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp --HHHHHHHHHHHHTTCSC
T ss_pred --HHHHHHHHHHHhCCCCc
Confidence 56677777777777653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=6.5e-11 Score=111.78 Aligned_cols=129 Identities=9% Similarity=-0.021 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----------C
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH------D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSS----------D 569 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~ 569 (652)
++..+...|...|++++|...|++++.. . ......++..++.++...|++++|.++++++.. .
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444444555555555555555554433 0 111233455555555555555555555554432 1
Q ss_pred CCCchhHHHHHHHHhccc------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 570 LGHSDSHVILLKSLADAR------EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+.....+..+...+...+ .+..+...++.+....|.. ...+..++.+|...|++++|.+++++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222333333322211 1222222222222222222 33344466667777777777777766543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=1.3e-09 Score=100.57 Aligned_cols=248 Identities=8% Similarity=-0.046 Sum_probs=166.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (652)
.+-..+-.|.+..++.-. .+...........-+.++|...|+++.. ....|....+..+.. |...+
T Consensus 19 ~ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc-
Confidence 344455566666666522 2211122233334445777788877642 122334334433333 33322
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877665 45666667888889999999999999999876652 2467788889999999999999999999
Q ss_pred HHHHCCCCC-----CHhhHHHHHHHHH--c--CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 495 NMLEKGVAP-----DATTYTSLLEGLC--Q--ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 495 ~m~~~~~~p-----~~~~~~~l~~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
+|.+. .| +..+...++.++. . .+++++|..+|+++....+ +......+..++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99865 55 3556666666632 2 3489999999999866553 322222333378899999999999987
Q ss_pred hhh-----------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 566 LSS-----------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 566 ~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+.+ +|.++.+...++......|+ +|.+++.++.+..|+.+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 654 25666676556555556676 88999999999999885
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=3.4e-10 Score=105.47 Aligned_cols=188 Identities=9% Similarity=-0.009 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCCHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 473 (652)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|++..+.. -+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4556666777777778888888888877766322 2 4566667777777777777777777777652 11224456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 006281 474 NILISKFSE--------VGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 474 ~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (652)
..+..++.. .|++++|+..|+++++.. |+. .....+. .+...... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 666666766 777777777777777542 221 1111111 01000000 011246
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCC---CchhHHHHHHHHhcc----------ccHHHHHHHHHHHHhcCCCCc
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLG---HSDSHVILLKSLADA----------REVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++.+|.+.|++++|+..++++.. .|. .+..+..++.+|... |++++|+..++++.+..|+.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 678889999999999999999876 444 234677888888766 899999999999999999875
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=3.7e-11 Score=100.82 Aligned_cols=144 Identities=8% Similarity=-0.065 Sum_probs=114.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 476 LISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
|...+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|+++++.++. +...|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 344566678889999888887653 22 3456667888899999999999999999988876 7888999999999999
Q ss_pred CHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH-HHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 555 HFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH-IKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
++++|+..++++.+ +|.++..+..++.++.+.|++++|.+. ++++.+.+|++ +.++.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 99999999999877 788888999999999999998776654 68999999987 4556656777777765
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=1.1e-10 Score=124.28 Aligned_cols=134 Identities=10% Similarity=0.008 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+..+|...|++++|++.|+++.+.... +...|..+..++...|++++|.+.|+++++.++. +...+..+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~ 510 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAAT 510 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 344444444444444555555444444433211 3344444444444445555555555444444433 33444444444
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.+.|++++ ++.++++.+ +|.++..+..++.++.+.|++++|++.++++.+.+|..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 444455444 444444443 44444444444444555555555555555544444444
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=4e-10 Score=106.74 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEG 514 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~ 514 (652)
|...|++++|.+.|++..+. |-+++ ..+|+.+..+|...|++++|+..|++.++. |-.+ ...++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555444332 11111 334555555555555555555555555432 1000 02345555666
Q ss_pred HHcC-CCHHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch-------hHHHHH
Q 006281 515 LCQE-TNLQAAFEVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD-------SHVILL 580 (652)
Q Consensus 515 ~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-------~~~~l~ 580 (652)
|... |++++|+..|+++++..+.. ...++..++..+.+.|++++|+..++++.. .+.... .+..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 66666666666665432211 023455666666666666666666666655 222211 244556
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++...|++++|+..++++.+.+|..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666666666666666665543
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=1.3e-09 Score=98.65 Aligned_cols=188 Identities=7% Similarity=-0.042 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH-hhHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DA-TTYTS 510 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~~ 510 (652)
...+..+...+.+.|++++|...|+.+.+... .| ....+..+..+|.+.|++++|+..|+++++..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566677788888888888888876521 11 13466777778888888888888888887653221 11 13334
Q ss_pred HHHHHHc------------------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006281 511 LLEGLCQ------------------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572 (652)
Q Consensus 511 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (652)
+..++.. .|++++|...|+++++..+. +............ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH------
Confidence 4444433 34455555555555544433 1111111100000 00000
Q ss_pred chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 573 SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ--EISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
......++..+.+.|++++|+..++++.+..|+.+. ..+..++.++.+.|++++|.+.++++...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011246778889999999999999999999988752 3455599999999999999999998887643
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.3e-09 Score=89.49 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (652)
..+...+...|++++|..+++++.+.... +...+..+...+...|++++|..+++++...++. +...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 33444444444444444444444432211 2333444444444444444444444444433322 233334444444444
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|++++|.+.++++.. .|.....+..++.++...|++++|...++++.+.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 444444444444433 22233334444444444444444444444444433
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=5.7e-09 Score=96.34 Aligned_cols=243 Identities=9% Similarity=0.000 Sum_probs=168.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
..-.|++..++.-...+ ....+...-.-+.++|...|+++.. ....|....+..+... ...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----H
Confidence 34568888877733322 2222233334455888888877642 1223444344444333 3322 7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888887765 566667778889999999999999999998866541 2567888899999999999999999999977
Q ss_pred CCC---CccHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc----
Q 006281 534 HDV---MLARSILSTFMIS--LCRRG--HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQES---- 602 (652)
Q Consensus 534 ~~~---~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 602 (652)
..+ ..+..+...++.+ ....| ++.+|..+|+++.+.+++..+...+..++.+.|++++|.+.++.+.+.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 653 1134555556555 33334 899999999999887655233334444889999999999999987775
Q ss_pred ------CCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 603 ------SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 603 ------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+|.+...+.| ++......|+ +|.++++++.+..
T Consensus 245 ~~k~~~~p~~~~~LaN-~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 245 EQKENAVLYKPTFLAN-QITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTCHHHHSSHHHHHHH-HHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccCCCCCHHHHHH-HHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4667666656 5555556676 8999999998764
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=5.5e-10 Score=105.32 Aligned_cols=204 Identities=13% Similarity=0.046 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------C
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRK------GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS------G 465 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 465 (652)
...++..+...|...|++++|+..+++..+. +..| ...++..+...+...|++++|.+.+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445666667777777777777777666543 1112 2345666666777777777777777766543 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC--
Q 006281 466 -CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK------GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-- 535 (652)
Q Consensus 466 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 535 (652)
.+....++..+...|...|++++|...++++.+. +..| ...++..+...|...|++++|...+++++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223556667777777777777777777777653 1122 24456667777777777777777777766531
Q ss_pred ------CCccHHHHHHHHHHHHhcCC------HHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 536 ------VMLARSILSTFMISLCRRGH------FLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 536 ------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.......+..+...+...+. +.++...++..... +.....+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122233333333333222 33333334333322 223345667888888888888888888887654
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=9.7e-10 Score=102.31 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=51.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcC----------CCCchHHHHHHHHHHc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSS----------SYPEPILLLLHALQEK 637 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 637 (652)
+..++.+|...|++++|+..++++.+..|+.. ...+..++.+|... |++++|.+.++++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 36789999999999999999999999988753 33444488888766 8889999999998876
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=3.3e-08 Score=92.42 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=179.0
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG--RLREAYGVIQEMKRKGLDPDVSFYNSLMEAC----CRE---DL 450 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~---g~ 450 (652)
..++|+.+++.+...++. +..+|+.-...+...| ++++++..++.+.....+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 346788888888887655 6667888888888888 999999999999887544 445565544444 444 78
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC------HH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE--GALRLFHNMLEKGVAPDATTYTSLLEGLCQETN------LQ 522 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~ 522 (652)
++++++.++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++++..+. |...|+.-...+.+.|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 899999999999876 778888888888888888888 999999999987665 77788877777777776 89
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHhhh-C---CCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL-VATKLLRGLSS-D---LGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
++++.+++++..++. |.+.|..+...+.+.|+.. ++..+..++.. . +.++.++..++.++.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999999999887 8899999988898888844 45567776654 2 4566677789999999999999999999
Q ss_pred HHHh-cCCCCcHHHHH
Q 006281 598 WIQE-SSPTMLQEISA 612 (652)
Q Consensus 598 ~~~~-~~~~~~~~~~~ 612 (652)
.+.+ .+|.. ...|+
T Consensus 283 ~l~~~~Dpir-~~yW~ 297 (306)
T 3dra_A 283 LLKSKYNPIR-SNFWD 297 (306)
T ss_dssp HHHHTTCGGG-HHHHH
T ss_pred HHHhccChHH-HHHHH
Confidence 9987 57765 44444
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.1e-09 Score=103.31 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
+.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++...++. ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 556677778888899999999999999999876433 6778888999999999999999999988776653 22233334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCC
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML-QEISAELFASLSSSSYP 624 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 624 (652)
...+...++.++|++.++++.. +|.++..+..++.++...|++++|++.++++.+.+|+.. ...+..++.+|...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4446777888889999988876 788889999999999999999999999999999999862 34455599999999999
Q ss_pred chHHHHHHHHHH
Q 006281 625 EPILLLLHALQE 636 (652)
Q Consensus 625 ~~a~~~~~~~~~ 636 (652)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887654
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=7e-10 Score=99.04 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS-FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.+......+...|++++|+..|++..+. .|+.. .|.. ...... ..........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKN--------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHH
Confidence 3444455666777777777777777665 23221 1111 000000 011122334478888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC--HHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH--FLV 558 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 558 (652)
.+.|++++|+..|++.++.... +...+..+...+...|++++|...|+++++.++. +...+..+..+|...|. ...
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999876433 6788888999999999999999999999998876 77888888888876654 445
Q ss_pred HHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 559 ATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 559 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+...++.+...++....+...+.++...|++++|+..++++.+..|+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 566666554422222244566777888899999999999999999875
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=1.2e-09 Score=103.43 Aligned_cols=212 Identities=9% Similarity=-0.017 Sum_probs=150.3
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhH
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDPD-VSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a 454 (652)
++++|...|... ...|...|++++|...|.+.... |..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777766654 44567788888888888876653 21111 45788888888888999999
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHcCCCHHH
Q 006281 455 KKLWDQMFASGC---SG--NLKTYNILISKFSEV-GEIEGALRLFHNMLEKGVAP-D----ATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 455 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~ 523 (652)
+..+++..+... .+ -..+++.+...|... |++++|+..|++.++..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888775410 11 145788888899986 99999999999887531110 1 3467888889999999999
Q ss_pred HHHHHHHhhhCCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh-----HHHHHHHHh--ccccH
Q 006281 524 AFEVFNKSVNHDVMLAR------SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS-----HVILLKSLA--DAREV 589 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~-----~~~l~~~~~--~~g~~ 589 (652)
|+..|++++...+.... ..+..++.++...|++++|+..+++... +|....+ +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887654322 2567788889999999999999999877 4433332 234555554 45778
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006281 590 EMAIEHIKWIQESSPTM 606 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~ 606 (652)
++|+..++++...+|..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 99999998888777654
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=1.4e-09 Score=89.23 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=114.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.|..+...+...|++++|..+++++++.++. +...+..++..+...|++++|.++++++.. .+..+..+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 5677888899999999999999999887765 677888899999999999999999999877 66677788899999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.|++++|++.++++.+..|.... .+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999887744 44459999999999999999999887653
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=8.1e-08 Score=97.40 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC-HHHHHHH
Q 006281 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR-VEEAFKV 248 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 248 (652)
++.|..+|+.+... -|. |+++.+..+|++.... .| +..+|...+....+.++ .+....+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~p-s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SY-NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CC-CHHHHHHHHHHHHHHC----CTHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CC-CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 66666666666543 122 6677777777766654 33 45566555555444442 2344455
Q ss_pred HHHHhhC-CCCc-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q 006281 249 LDELRIR-ECKP-DFIAYRIVAEEFK----LMGSVFEREVVLKKKRK 289 (652)
Q Consensus 249 ~~~m~~~-~~~p-~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~ 289 (652)
|+..... |..| +...|...+..+. ..++.+.+..+|+....
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5554432 3222 4445554444332 12345555555555554
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=1.2e-08 Score=95.37 Aligned_cols=221 Identities=9% Similarity=-0.044 Sum_probs=180.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc--
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED--LLRPAKKLWDQMFASGCSGNLKTYNILISKF----SEV-- 483 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 483 (652)
.....++|+.++++++..+.. +...|+.--..+...| +++++++.++.+...+ +.+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 334457999999999988543 5566787778888888 9999999999999875 56667777665555 455
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC-----
Q 006281 484 -GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ--AAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----- 555 (652)
Q Consensus 484 -g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 555 (652)
+++++++++++.+.+...+ +..+|..-...+.+.|.++ ++++.++++++.++. +...|.....++.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 7899999999999987655 7888888888888888888 999999999999987 88889888888888877
Q ss_pred -HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH-HHHHHHHHHHHhcC---CCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 556 -FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV-EMAIEHIKWIQESS---PTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 556 -~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
++++++.++++.. +|.+.++|.-+...+.+.|+. +.+.+..+++.+.+ |.. ...+..++++|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998876 888999999999999888874 44566777776654 444 4556669999999999999999
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
+++++.++
T Consensus 280 ~~~~l~~~ 287 (306)
T 3dra_A 280 VYDLLKSK 287 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998863
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=1.3e-09 Score=97.37 Aligned_cols=124 Identities=11% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc-
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE- 588 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~- 588 (652)
+..+|.+.|++++|...|+++++.++. +...+..+..++...|++++|++.++++.+ +|.++..+..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 888899999999999999999998887 788999999999999999999999999988 88889999999999877664
Q ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 589 -VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 589 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.+.+...++++....| ....+..++.++...|++++|.+.++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---CCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4566777777654332 2223333677777899999999999987765
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=6.7e-10 Score=96.21 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH-H
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-L 550 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 550 (652)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++++...+ ++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3455666777888888888888887754322 567788888888888899999888888776654 44333332222 2
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCCchHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML-QEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 628 (652)
...+...+|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|... ...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333457888888766 777888899999999999999999999999999988752 344555889999999999999
Q ss_pred HHHHHHHH
Q 006281 629 LLLHALQE 636 (652)
Q Consensus 629 ~~~~~~~~ 636 (652)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=8.5e-10 Score=117.46 Aligned_cols=170 Identities=9% Similarity=-0.005 Sum_probs=98.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 411 CTSGRLREAYGVIQEMK--------RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
...|++++|++.+++.. +.. ..+...+..+..++...|++++|.+.|+++.+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44566666666666655 221 1133455555556666666666666666666543 4455566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
.|++++|++.|++..+.... +...+..+..++.+.|++++ .+.|+++++.++. +...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666654322 34455556666666666666 6666666665554 455566666666666666666666
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhc
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
++++.+ +|.....+..++.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 666655 44445555556655544
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.7e-08 Score=90.12 Aligned_cols=177 Identities=13% Similarity=0.055 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG----EIEGALRLF 493 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 493 (652)
+|+..|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665553 45556666666666677777777777666643 44555666666665 5 677777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCR----RGHFLVATKLLR 564 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 564 (652)
++..+.| +...+..|...|.. .+++++|+++|+++.+.+.. ..+..+..|...|.. .+++++|+++++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 67777888888777766642 125566777777777 677888888887
Q ss_pred HhhhCCCCchhHHHHHHHHhcc-c-----cHHHHHHHHHHHHhcCC
Q 006281 565 GLSSDLGHSDSHVILLKSLADA-R-----EVEMAIEHIKWIQESSP 604 (652)
Q Consensus 565 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 604 (652)
+..+.+.++.++..|+..|... | ++++|+..++++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7766555666777777777543 2 77888888877777654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.1e-08 Score=91.43 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC----CHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET----NLQAAFEV 527 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~ 527 (652)
.+|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888754 67788889999999999999999999999875 66778888888887 6 89999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCC---chhHHHHHHHHhc----cccHHHHHHHH
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGH---SDSHVILLKSLAD----AREVEMAIEHI 596 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 596 (652)
|+++.+.+ ++..+..|...|.. .+++++|++++++..+..+. +.++..|+..|.. .+++++|+..+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 55678888888887 88999999999999885443 7888899999988 88999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcC-C-----CCchHHHHHHHHHHcccc
Q 006281 597 KWIQESSPTMLQEISAELFASLSSS-S-----YPEPILLLLHALQEKCLD 640 (652)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g~~ 640 (652)
+++.+. +......++ |+.+|... | ++++|.+.+++..+.|..
T Consensus 153 ~~A~~~-~~~~~a~~~-Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYW-AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT-SCTTHHHHH-HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc-CCCHHHHHH-HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999988 334344444 88888653 3 899999999999888753
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=4.4e-07 Score=92.03 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-ETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..|...+..+.+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+..++..+. ++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45666666666677788888888888 32 12233344332222222 23688888888888775543 45566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..+.|+.+.|..+++++.. ....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888732 345566666666677888888887777664
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=5.3e-10 Score=93.74 Aligned_cols=143 Identities=13% Similarity=-0.003 Sum_probs=100.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++.++.... +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34445667777777777766542 223445566777788888888888888888765433 5677788888888888888
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH-HHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-LRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
+|...|+++++.++. +...+..+..+|.+.|++++|.+. ++++.+ +|.++..+......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888877765 677788888888888887765544 566655 77777777777777666653
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=2.5e-09 Score=111.93 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=126.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
.|++++|.+.+++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 556889999999999999999999999999976433 678899999999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc---ccHHHHHHHHHHHHhcC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA---REVEMAIEHIKWIQESS 603 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 603 (652)
|+++++.++. +...+..+..++.+.|++++|.+.++++.+ +|.+...+..++.++... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999998876 788899999999999999999999999877 777888899999999999 99999999999999999
Q ss_pred CCCcHH
Q 006281 604 PTMLQE 609 (652)
Q Consensus 604 ~~~~~~ 609 (652)
|.....
T Consensus 159 p~~~~~ 164 (568)
T 2vsy_A 159 VGAVEP 164 (568)
T ss_dssp CCCSCH
T ss_pred CcccCh
Confidence 987543
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=1.7e-08 Score=91.24 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 473 (652)
+...+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 4456677788899999999999999999987432 11 3567788899999999999999999999863 2222 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 474 NILISKFSE------------------VGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 474 ~~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
..+..++.. .|++++|...|+++++. .|+.. .+...... ..+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~---- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDR---- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHH----
Confidence 555555554 57899999999999975 34432 22211110 001110
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.......++..|.+.|++++|+..++++.+ .|.++ ..+..++.++.+.|++++|++.++.+....|..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011223567788999999999999999877 44443 467789999999999999999999999888765
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=4.6e-09 Score=109.94 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=127.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (652)
.|++++|+..|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999998876432 57889999999999999999999999999875 56788999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHhhh-
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR---GHFLVATKLLRGLSS- 568 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~- 568 (652)
|++..+.... +...+..+..++...|++++|.+.|+++++.++. +...+..+..++... |++++|.+.++++.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999986433 6788999999999999999999999999988876 678889999999999 999999999999877
Q ss_pred CCCCchhHHHHH
Q 006281 569 DLGHSDSHVILL 580 (652)
Q Consensus 569 ~~~~~~~~~~l~ 580 (652)
+|.....+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 666666666555
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=8.2e-09 Score=83.27 Aligned_cols=110 Identities=13% Similarity=0.029 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+......|.+.|++++|++.|+++++.++. +...|..+..++.+.|++++|++.++++.+ +|..+..+..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45667778888899999999999988888776 778888899999999999999999998877 7788888889999999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
..|++++|++.++++.+.+|++... ...|..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a-~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEA-REGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHH-HHHHHHh
Confidence 9999999999999999999988443 3335443
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=6.1e-09 Score=98.11 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL-LE 513 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~ 513 (652)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+....... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3445555556666677777777777666653 445566666666777777777777777666543 3333322222 22
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC--chhHHHHHHHHhccccHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH--SDSHVILLKSLADAREVE 590 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 590 (652)
.+...++.++|.+.+++++..++. +...+..+...+...|++++|++.+.++.. +|.. ...+..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 244555666667777776666665 566666677777777777777777776665 4444 456667777777777777
Q ss_pred HHHHHHHHHH
Q 006281 591 MAIEHIKWIQ 600 (652)
Q Consensus 591 ~A~~~~~~~~ 600 (652)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777666654
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=2.4e-09 Score=89.14 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+...+.+.|++++|.+.|++++..++. ++..|..+..+|...|++++|++.++++.. +|.++..+..++.+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 34555666667777777777777777766665 666677777777777777777777777666 6666677777777777
Q ss_pred ccccHHHHHHHHHHHHhcCCCC
Q 006281 585 DAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..|++++|+..++++.+..|+.
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777776654
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=5e-09 Score=90.64 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=80.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQET 519 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g 519 (652)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344455555555555555544432 3344455555555555555555555555544321 222221111111 11111
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC--chhHHHHHHHHhccccHHHHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH--SDSHVILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 596 (652)
+..+|...++++++.++. +...+..+..++...|++++|+..++++.. +|.. +..+..++.++...|+.++|+..+
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222356666666665554 555666666666666666666666666655 3322 335666666666666666666666
Q ss_pred HHHH
Q 006281 597 KWIQ 600 (652)
Q Consensus 597 ~~~~ 600 (652)
+++.
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=3.9e-08 Score=88.12 Aligned_cols=127 Identities=15% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|++++..++. +...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444445555555555555442 334455555555555555555555555555554433 4445555555555555
Q ss_pred CHHHHHHHHHHhhh-CCCCc----------------hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 555 HFLVATKLLRGLSS-DLGHS----------------DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++++|++.++++.. .|.+. ..+..++.++...|++++|++.++++.+..|..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555544 22222 445556666666666666666666666665544
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2e-08 Score=95.70 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=103.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT-SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
..|++++|.+++++..+.... . +.+ .++++.|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356788888888877653110 0 011 34455555554443 23444556666666
Q ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HhhHHHHHHHHHcCCCHHHHH
Q 006281 456 KLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEKG--V-APD--ATTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 456 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~a~ 525 (652)
+.|.+..+. +-. .-..+|+.+..+|...|++++|+..|++.++.- . .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 665555432 100 012355555566666666666666666554320 0 111 2345555555655 6666666
Q ss_pred HHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC--CC----chhHHHHHHHHhccccHHHHH
Q 006281 526 EVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DL--GH----SDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 526 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~----~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+.|++++...... ...++..+..+|.+.|++++|++.++++.. .+ .. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655432110 133455666666666666666666665543 11 11 113334455555556666666
Q ss_pred HHHHHHHhcCCC
Q 006281 594 EHIKWIQESSPT 605 (652)
Q Consensus 594 ~~~~~~~~~~~~ 605 (652)
..++++. ..|.
T Consensus 216 ~~~~~al-~~p~ 226 (307)
T 2ifu_A 216 KCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHT-TSTT
T ss_pred HHHHHHh-CCCC
Confidence 6666666 5554
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.91 E-value=1.2e-06 Score=82.63 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=157.0
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChhhHH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-D-LLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g-~~~~a~ 455 (652)
+..++|+++++.+...++. +..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456788888888877655 6667777777777777 588999999988887655 667777776666666 6 788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-------
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIE--------GALRLFHNMLEKGVAPDATTYTSLLEGLCQETN------- 520 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------- 520 (652)
+.++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 8888888765 667777776666666555555 888888888887555 77788888777777775
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhhC-------CCCc
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF--------------------LVATKLLRGLSSD-------LGHS 573 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~-------~~~~ 573 (652)
++++++.+++++..++. |...|..+-..+.+.|+. .+.......+... ..++
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888888888877 888888777777776653 2333333333332 2333
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHh-cCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQE-SSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 605 (652)
-.+..++.+|...|+.++|.++++.+.+ .+|.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 4555778888888888888888888764 3443
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=5.6e-09 Score=87.11 Aligned_cols=114 Identities=14% Similarity=0.004 Sum_probs=90.2
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 491 RLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 491 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..|+++... .| +...+..+...+...|++++|...|++++..++. +...+..+..++...|++++|++.++++..
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555533 33 3456666777888889999999999888887775 777888888888889999999998888877
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+|.++..+..++.++...|++++|++.++++.+..|+.+
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 777888888888888899999999999998888877653
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1.6e-08 Score=84.02 Aligned_cols=107 Identities=8% Similarity=-0.065 Sum_probs=69.3
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+++++.++. +...+..+...+.+.|++++|++.|+++.. +|.++..|..++.++...|++++|++.++++.+.+|+.+
T Consensus 26 ~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 26 KDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp GGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 333443333 445566666666777777777777776665 566666666777777777777777777777777777665
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...++ ++.+|...|++++|.+.+++..+.
T Consensus 105 ~~~~~-lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFH-TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55444 667777777777777777766654
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=3.6e-08 Score=88.30 Aligned_cols=128 Identities=9% Similarity=-0.116 Sum_probs=111.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...+...|++++|.+.|++++ .|+...+..++.++...|++++|++.++++.. +|..+..+..++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45566778889999999999999874 45778999999999999999999999999877 77788899999999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 586 AREVEMAIEHIKWIQESSPTML---------------QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.|++++|++.++++.+..|... ...+..++.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999887654 2444459999999999999999999888764
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.3e-07 Score=86.07 Aligned_cols=198 Identities=10% Similarity=0.007 Sum_probs=144.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCC---------------
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSL-------MEACCREDLLRPAKKLWDQMFASGCSGN--------------- 469 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 469 (652)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888999999988887433 45667666 4455555555555555554443 2221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHH
Q 006281 470 -------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARS 541 (652)
Q Consensus 470 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 541 (652)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......... ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2234456777888999999999999887643 544455556667889999999999998765543111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++..+..++.+.|++++|++.+++....+. .++.....+.++.+.|+.++|...|+++...+|. ......|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 788899999999999999999999876432 3346778999999999999999999999999998 555554543
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=6.1e-08 Score=92.36 Aligned_cols=199 Identities=12% Similarity=0.048 Sum_probs=123.1
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChh
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL---DP--DVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p--~~~~~~~ll~~~~~~g~~~ 452 (652)
.++++.|...|... ...|...|++++|...|.+..+... .+ -..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666555543 3455666777777777766554310 00 1235666777777778888
Q ss_pred hHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHHHHHcCCCH
Q 006281 453 PAKKLWDQMFAS----GCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA---P--DATTYTSLLEGLCQETNL 521 (652)
Q Consensus 453 ~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~ 521 (652)
+|...|++..+. | .+. ..++..+..+|.. |++++|+..|++.++.... + ...++..+...|...|++
T Consensus 94 ~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 888888776543 2 121 3567777778877 8888888888887643111 0 135677778888888888
Q ss_pred HHHHHHHHHhhhCCC----Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh-----HHHHHHHHhccccHHH
Q 006281 522 QAAFEVFNKSVNHDV----MLA-RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-----HVILLKSLADAREVEM 591 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~ 591 (652)
++|++.|++++.... .+. ...+..++.++...|++++|...+++....|....+ ...++.++ ..|+.+.
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 888888888776321 111 225666667777788899998888887632322221 22344444 4566655
Q ss_pred HHH
Q 006281 592 AIE 594 (652)
Q Consensus 592 A~~ 594 (652)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=2.9e-07 Score=86.86 Aligned_cols=225 Identities=9% Similarity=-0.011 Sum_probs=171.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-C
Q 006281 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-G-E 485 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 485 (652)
.....+..++|++++++++..+.. +..+|+.--..+...| .++++++.++.+.... +.+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334445567899999999988544 5666777777777788 5999999999999876 67888888887777776 7 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH--------HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC--
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ--------AAFEVFNKSVNHDVMLARSILSTFMISLCRRGH-- 555 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 555 (652)
+++++++++.+.+...+ |..+|+.-...+.+.|.++ ++++.++++++.++. |...|+....++.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 99999999999987555 7778877666665555555 899999999999987 88899999888888876
Q ss_pred -----HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH--------------------HHHHHHHHHHHhcC-----C
Q 006281 556 -----FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV--------------------EMAIEHIKWIQESS-----P 604 (652)
Q Consensus 556 -----~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 604 (652)
++++++.++++.. +|.+.++|.-+...+.+.|+. .+..+...++.... .
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999988776 888999998877777766653 22333333333222 0
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.........|+++|...|+.++|.++++.+.++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 234566777999999999999999999998754
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=4.1e-08 Score=83.81 Aligned_cols=129 Identities=6% Similarity=-0.041 Sum_probs=76.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...+...|++++|...|++++...+. +..++..++.++...|++++|++.+++... .|..+..+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444555556666666666666666555443 455566666666666666666666666555 45555566666666666
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEIS-AELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.|++++|++.++++.+.+|....... ...+..+...|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666665533221 1133335556666666666665543
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=5e-07 Score=85.41 Aligned_cols=160 Identities=6% Similarity=-0.039 Sum_probs=90.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASG-CSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSL 511 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 511 (652)
+..+...|++++|.++++...+.. ..|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666666666666665531 11221 12333555555666777777777776653221 12 2246666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----C---CCCchhHHH
Q 006281 512 LEGLCQETNLQAAFEVFNKSVN------HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS----D---LGHSDSHVI 578 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~~~~~~~~~ 578 (652)
...|...|++++|...|+++++ ........++..++.+|.+.|++++|++.+++... . ......+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777776653 11111233566677777777777777777665543 1 111345556
Q ss_pred HHHHHhcccc-HHHHHHHHHHHHh
Q 006281 579 LLKSLADARE-VEMAIEHIKWIQE 601 (652)
Q Consensus 579 l~~~~~~~g~-~~~A~~~~~~~~~ 601 (652)
++.++.+.|+ +++|++.++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6667776673 5777777766654
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=1.1e-08 Score=96.03 Aligned_cols=194 Identities=13% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445555555666666666666666666543 335556666666666666666666666666654222 45556666666
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+...|++++|...|+++++.++. +...+...+....+. .++........ ..+..+.....+... ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 66666666666666666554321 100011111111111 11111111111 122333333333332 257777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCchHHHHHHHHHHc
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSS-SYPEPILLLLHALQEK 637 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 637 (652)
+.++++.+.+|+.. .+...+...+... +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777777777653 3333344444444 5667777777765543
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.84 E-value=2.1e-06 Score=80.66 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVG--EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN-LQAAFEVF 528 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 528 (652)
++++..++.+.... +.+..+|+.-.-++...+ .+++++.+++.+.+...+ |..+|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34444444444332 334444444433333333 244444444444443322 34444444444444444 34445555
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc-------
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRR--------------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA------- 586 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~------- 586 (652)
+++++.++. |...|+.....+.+. +.++++++.+.++.. +|.+.++|.-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 544444444 444444444333332 234455555554443 445555554333333332
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCcHHHHHHHHH---HhhcCCCCchHHHHHHHHHHc
Q 006281 587 ----REVEMAIEHIKWIQESSPTMLQEISAELFA---SLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 587 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+.++++++.++++.+..|++.-. +-.++. .....|..+++.+.+.++.+.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchH-HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34556666666666666655221 111221 112345555555555555543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3.4e-07 Score=86.53 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-cc----HHHH
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGV-APDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LA----RSIL 543 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 543 (652)
...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|++++..... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999986422 22321 2334666777888999999999999884322 12 3368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh----CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-----CcHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS----DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPT-----MLQEI 610 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~ 610 (652)
..++.+|...|++++|+..++++.. .+.. ...+..++.+|.+.|++++|++.++++.+..+. .....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998863 1122 235678999999999999999999998875322 22556
Q ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHc
Q 006281 611 SAELFASLSSSSY-PEPILLLLHALQEK 637 (652)
Q Consensus 611 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~ 637 (652)
+..++.+|.+.|+ +++|.+.+++..+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6679999999996 59999999887654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=5.8e-08 Score=79.25 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=80.8
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456666667777777777777777777766554 566677777777777777777777777665 55566677777777
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS 622 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (652)
+...|++++|++.++++.+.+|........ +..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADG-YQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHH-HHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHhc
Confidence 777788888888888877777766443333 665555444
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=9.6e-08 Score=76.91 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|+++++.++. +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 45666777778888888888888887765433 5677777778888888888888888888777765 667777788888
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
...|++++|++.++++.+ +|.+...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888776 66666666555543
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=1.3e-08 Score=84.87 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
+...+..+...+...|++++|+..|++....... +...|..+..+|...|++++|+..|++++..++. ++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455555555566666666666655544222 4455555555555666666666666655555543 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 006281 549 SLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|...|++++|++.++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666655544
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=7.7e-08 Score=78.14 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=86.4
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445666667777777788888877777766554 566777777788888888888888877766 566667777888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
...|++++|+..++++.+..|.... .+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNET-YKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHhcC
Confidence 8888888888888888888877643 344477777766665
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=7.9e-07 Score=84.01 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---cc--HH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA-----TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LA--RS 541 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 541 (652)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++++..... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556666777777777777766654222111 12333445566777888888887777653211 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh---h-CCCCc----hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-----CcH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLS---S-DLGHS----DSHVILLKSLADAREVEMAIEHIKWIQESSPT-----MLQ 608 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 608 (652)
++..++..|...|++++|+..++++. . .+... ..+..++.+|...|++++|++.++++.+..+. ...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777778888888888888887765 2 22221 35667777888888888888888877654321 124
Q ss_pred HHHHHHHHHhhcCCCCchH-HHHHHHHHH
Q 006281 609 EISAELFASLSSSSYPEPI-LLLLHALQE 636 (652)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 636 (652)
..+..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4555578888888888888 666766543
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=6e-06 Score=77.57 Aligned_cols=233 Identities=9% Similarity=0.033 Sum_probs=167.3
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 376 CKRNKSD-ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 376 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
.+.|.++ +|+.+++.+...++. +..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445554 678888888776554 55556554444433332 67888888888887554 77778777777
Q ss_pred HHhcCC--hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---
Q 006281 445 CCREDL--LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--- 518 (652)
Q Consensus 445 ~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 518 (652)
+.+.++ ++++++.++.+.+.. +-|..+|+.-.-++...|. ++++++.++.+++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777774 789999999998876 6788888888777778887 58999999999987655 777777766665544
Q ss_pred -----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhh-CCCCchh
Q 006281 519 -----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-----------GHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 519 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
+.++++++.+++++..++. |.+.|+.+-..+.+. +.++++++.++++.+ .|.+ .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~--~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN--K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC--H
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc--c
Confidence 4578999999999998887 888888776666665 457899999999988 5544 3
Q ss_pred HHHHHHH-----HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 576 HVILLKS-----LADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 576 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
|..+..+ ....|..++....+.++.+.+|.-. ..|..+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~-~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH-HHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh-hHHHHHHH
Confidence 3322222 2246778899999999999999763 33443443
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=3.4e-08 Score=81.80 Aligned_cols=102 Identities=9% Similarity=-0.069 Sum_probs=82.2
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+.+.|++++|...|++++..++. +...|..+..++.+.|++++|+..++++.. +|.++..+..++.++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345556667788888888888888888887765 777788888888888888888888888876 677778888888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...|++++|++.++++.+..|..+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888888888888888888777553
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=1.2e-07 Score=76.20 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=73.3
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|.+.|++++...+. +...+..++..+...|++++|..+++++.. .|.++..+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345556666666667777777777666655443 455666667777777777777777776655 455566666777777
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
...|++++|+..++++.+.+|........ ++.++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQN-LGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHH
Confidence 77777777777777777777766433332 554443
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=8.4e-08 Score=87.36 Aligned_cols=188 Identities=8% Similarity=-0.047 Sum_probs=143.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNIL-------ISKFSEVGEIEGALRLFHNMLEKGVAPD--------------- 504 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 504 (652)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+++-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999885 5667788877 5666666666677666666553 2222
Q ss_pred -------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---ch
Q 006281 505 -------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH---SD 574 (652)
Q Consensus 505 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 574 (652)
......+...+...|++++|.++|+.+...++. +. ....+...+.+.|++++|+..++.....+.. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345667788999999999999988776643 33 6666777899999999999999977664322 23
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
.+..++.++...|++++|+..|+++.... |..........+.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999998543 442333333389999999999999999999988643
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=2.6e-07 Score=78.70 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++++...+. +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 45666777778888888888888888765322 5677778888888888888888888888877654 667788888888
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHH--HHHHHhccccHHHHHHHHHHHHh
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
...|++++|.+.++++.. .|.+...+.. .+..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999998888876 5666666643 44447778889999888877654
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=4.9e-08 Score=94.14 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=78.6
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--------------ATTYTSLLEG 514 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~ 514 (652)
+++++|.+.|+...+.. +.+...+..+...|.+.|++++|+..|++.++...... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444333221 22455666677777777777777777777765432211 2445555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH-
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA- 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A- 592 (652)
|.+.|++++|+..|+++++.++. +...+..+..+|...|++++|+..++++.+ +|.+...+..++.++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443 444555555555555555555555555544 444444555555555555555555
Q ss_pred HHHHHHHH
Q 006281 593 IEHIKWIQ 600 (652)
Q Consensus 593 ~~~~~~~~ 600 (652)
...++++.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=4e-08 Score=85.06 Aligned_cols=125 Identities=7% Similarity=0.091 Sum_probs=88.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH-HHhcCCH--H
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHF--L 557 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 557 (652)
...|++++|...+++..+... .+...+..+...|...|++++|...|++++..++. +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777766432 25667777777777778888888888877776654 56667777777 6677777 8
Q ss_pred HHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 558 VATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 558 ~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+|+..++++.. +|.++..+..++.++...|++++|+..++++.+..|...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 88888887766 566677777888888888888888888888888877653
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=2.5e-08 Score=86.39 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=103.6
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH-HhccccH--H
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS-LADAREV--E 590 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~-~~~~g~~--~ 590 (652)
+...|++++|...+++.+..++. +...+..++.+|...|++++|+..++++.. .|.++..+..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34578899999999999888775 778899999999999999999999999877 67778888899999 7889998 9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+|+..++++.+.+|......+. ++.+|...|++++|.+.++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALML-LASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999999988555444 9999999999999999999988763
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=7.9e-09 Score=91.42 Aligned_cols=130 Identities=10% Similarity=0.016 Sum_probs=84.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA---------------RSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.+..+...+...|++++|...|++++...+... ..++..+..++.+.|++++|+..++++.. +|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 444455555566666666666666555433211 25677788888888888888888888776 66
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH-HHHHHHHHc
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL-LLLHALQEK 637 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 637 (652)
..+..+..++.++...|++++|++.++++.+.+|... ..+..+..++...|+.+++. ..++.+..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-DIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHC------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777888888888888888888888888888888774 44444777777777666666 444544443
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2e-07 Score=75.23 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=78.6
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+.+.|++++|...|+++++.++. +...+..+..++.+.|++++|++.++++.. +|..+..+..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345666777778888888888888888877765 677788888888888888888888888776 677777888888888
Q ss_pred hccccHHHHHHHHHHHHhcC
Q 006281 584 ADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~ 603 (652)
...|++++|++.++++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888888877
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=4.6e-07 Score=77.06 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=85.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|++.|+++++.++. +...+..+..+|.+.|++++|++.++++.. +|.++..+..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777777888888888888888888877765 677888888888888888888888888877 67777888888888
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
+...|++++|++.++++.+.+|+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88889999999999998888887754
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=3.3e-07 Score=74.63 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++++..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34555666666666777777777777766654222 4556666666677777777777777776665544 556666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
.++.+.|++++|++.+++... .|.+...+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777776655 4445555556666655444
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=2.1e-06 Score=81.12 Aligned_cols=163 Identities=6% Similarity=-0.059 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HhhH
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGN-----LKTYNILISKFSEVGEIEGALRLFHNMLEKGV---APD--ATTY 508 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~ 508 (652)
...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344555566666666666665555421110 11233345556677788888888777764321 111 3467
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh---CCCC-c--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----Cchh
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVN---HDVM-L--ARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDS 575 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~ 575 (652)
+.+...|...|++++|...|++++. .... + ...++..++.+|...|++++|++.+++...- .. ....
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7777788888888888888887763 2111 1 1256777888888888888888888876431 11 1345
Q ss_pred HHHHHHHHhccccHHHH-HHHHHHHHh
Q 006281 576 HVILLKSLADAREVEMA-IEHIKWIQE 601 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 601 (652)
+..++.+|...|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67788888888888888 676777654
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=5e-07 Score=72.44 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|..+|++++...+. +...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 34555566666666666666666666665422 24555666666666666666666666666655443 45556666666
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
+...|++++|.+.++++.. .|..+..+..++.++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 6667777777776666655 4445555555555444
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.6e-07 Score=77.69 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+.+.|++++|...|++....... +...|..+..++...|++++|...|++++..++. ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 34444455555556666666666655544222 4455555555555666666666666655555544 444555555556
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 006281 551 CRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~ 568 (652)
...|++++|++.++++..
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666555544
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=4.2e-07 Score=87.55 Aligned_cols=121 Identities=10% Similarity=-0.025 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--------------RSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
..+..+...|.+.|++++|...|++++...+... ..++..+..+|.+.|++++|++.++++.. +|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444445555555555554444433311 24444444555555555555555554444 44
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
.++..+..++.+|...|++++|+..++++.+.+|.... .+..+..++...|++++|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA-AKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555444422 222244444444444444
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=3.1e-07 Score=86.01 Aligned_cols=194 Identities=7% Similarity=-0.063 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+...|++++|+..|++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456666777777777777777777777766322 56667777777777788888888777777664 456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+|...|++++|...|++..+.... +...+...+....+ ...+..... ........+..+...+...+ .|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 787888888888887777653210 00011111111111 111111111 22222333444444443322 577788
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhcc-ccHHHHHHHHHHHHh
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADA-REVEMAIEHIKWIQE 601 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 601 (652)
|++.++++.+ +|.+......+...+.+. +.+++|.+++.++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877777666 333333333444444444 567778888877665
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=5.5e-07 Score=71.37 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=76.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|...++++.. .|..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445666677777778888888888777776654 566777777778888888888888877766 556667777888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...|++++|.+.++++.+.+|...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 888888888888888888877764
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=2e-07 Score=74.44 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
..+...+.+.|++++|...|+++++.++. +...+..+..++...|++++|+..++++.. +|..+..+..++.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33444555556666666666665555544 455555556666666666666666665554 4555555556666666666
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 006281 588 EVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~ 605 (652)
++++|+..++++.+.+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 666666666666555554
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.9e-07 Score=81.53 Aligned_cols=157 Identities=10% Similarity=-0.048 Sum_probs=94.8
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCC
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETN 520 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~ 520 (652)
...|++++|.++++.+... ......++..+...|...|++++|...+++..+. +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755544332 1234566777777777778888888777776641 1111 23456666667777777
Q ss_pred HHHHHHHHHHhhhC---CC-C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCch----hHHHHHHHHhccc
Q 006281 521 LQAAFEVFNKSVNH---DV-M--LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGHSD----SHVILLKSLADAR 587 (652)
Q Consensus 521 ~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g 587 (652)
+++|.+.+++++.. .. . .....+..+...+...|++++|.+.+++... ...++. .+..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776553 11 1 1234466677777777777777777776543 111211 2346667777777
Q ss_pred cHHHHHHHHHHHHhcC
Q 006281 588 EVEMAIEHIKWIQESS 603 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~ 603 (652)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7777777777776663
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=5.4e-07 Score=72.98 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++++...+. +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 345566666666677777777777777665422 24556666666777777777777777776665544 4566666777
Q ss_pred HHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 549 SLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
++...|++++|.+.++++.. .|.++..+..++.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777777777655 55555666666666666554
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=6.5e-07 Score=79.25 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=85.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGNLKTYNILISKFSEVGE 485 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 485 (652)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456677776644444321 1123455666666666677777777777666542 11 1223455666666667777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC----C-CccHHHHHHHHHHHHhcC
Q 006281 486 IEGALRLFHNMLEK----GVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD----V-MLARSILSTFMISLCRRG 554 (652)
Q Consensus 486 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g 554 (652)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++.+... . .....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665532 1111 12345556666666677777777776655321 1 111223455666666677
Q ss_pred CHHHHHHHHHHhhh
Q 006281 555 HFLVATKLLRGLSS 568 (652)
Q Consensus 555 ~~~~A~~~~~~~~~ 568 (652)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766666554
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.9e-07 Score=73.46 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
...+..++..+.+.|++++|++.+++... +|.++..+..++.++...|++++|+..++++.+.+|......++ ++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR-KATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHH
Confidence 45678888999999999999999999877 78888899999999999999999999999999999998555444 99999
Q ss_pred hcCCCCchHHHHHHHHHHcc
Q 006281 619 SSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~~g 638 (652)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999888764
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=1.8e-07 Score=74.68 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
.+..++..+.+.|++++|+..++++.. +|.++..+..++.++...|++++|+..++++.+.+|+.....++ ++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-LAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHH
Confidence 355677889999999999999999987 78889999999999999999999999999999999998655544 9999999
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|++.++++.+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987764
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.1e-06 Score=71.34 Aligned_cols=104 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILL 580 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~ 580 (652)
+...+..+...+...|++++|.+.|+++++..+.. ....+..+..++...|++++|++.+++... .|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45566777777778888888888888877765431 156677788888888888888888888766 566777788888
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++...|++++|+..++++.+.+|...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 888888999999999998888888764
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=4.2e-07 Score=73.25 Aligned_cols=99 Identities=6% Similarity=0.062 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc-------hhHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS-------DSHV 577 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-------~~~~ 577 (652)
..+..+...+.+.|++++|++.|+++++.++. +...|..+..+|.+.|++++|++.+++..+ .|... .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666777777777777777777776655 566677777777777777777777776644 22221 2455
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++.++...|++++|++.++++.+..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6677777777888888888877776664
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=5e-07 Score=70.84 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT--MLQEISAELFASL 618 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~ 618 (652)
.+..++..+...|++++|...++++.. .+.....+..++.++...|++++|++.++++.+..|. .. ..+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK-DVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-HHHHHHHHHH
Confidence 344555556666666666666666544 4445555566666666666666666666666666665 43 3333366666
Q ss_pred hcC-CCCchHHHHHHHHHHc
Q 006281 619 SSS-SYPEPILLLLHALQEK 637 (652)
Q Consensus 619 ~~~-g~~~~a~~~~~~~~~~ 637 (652)
... |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 666 6666666666655443
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=6.1e-07 Score=70.34 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=76.2
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC--CchhHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG--HSDSHVILLK 581 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~ 581 (652)
...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|.+.++++.+ .|. ....+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 345566667777778888888888877776654 566777778888888888888888887766 455 5667778888
Q ss_pred HHhcc-ccHHHHHHHHHHHHhcCCCC
Q 006281 582 SLADA-REVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 582 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 606 (652)
++... |++++|++.++++....|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888877765
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.8e-07 Score=82.53 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=101.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhhHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---------------ATTYT 509 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~ 509 (652)
....|+++.+.+.|+.-.... ......+..+...+...|++++|+..|++.++....-. ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334455555555554322210 12344566667777778888888888888776422111 26777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+..+|...|++++|+..+++++..++. +...+..+..++...|++++|++.++++.. +|.+...+..+..++...++
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998887765 677888899999999999999999998877 67777788888888887777
Q ss_pred HHHHH-HHHHHHHh
Q 006281 589 VEMAI-EHIKWIQE 601 (652)
Q Consensus 589 ~~~A~-~~~~~~~~ 601 (652)
.+++. ..+..+..
T Consensus 172 ~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 172 ARKKDKLTFGGMFD 185 (198)
T ss_dssp HHC-----------
T ss_pred HHHHHHHHHHHHhc
Confidence 77665 44444433
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=3.5e-07 Score=73.75 Aligned_cols=97 Identities=5% Similarity=-0.089 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc------HHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML------QEISAE 613 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 613 (652)
..+..++..+.+.|++++|++.|+++.+ +|.++..+..++.+|...|++++|++.++++.+.+|... ...+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3577899999999999999999999887 888889999999999999999999999999998776542 235566
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHc
Q 006281 614 LFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 614 l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 889999999999999999987764
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=3.5e-07 Score=77.66 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=83.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC------------------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH------------------DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+......+.+.|++++|+..|++++.. ++ .+..+|..+..+|.+.|++++|+..++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3444555555666666666666655543 11 1446788899999999999999999999877
Q ss_pred -CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 569 -DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 569 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
+|..+..+..++.++...|++++|+..++++.+.+|++...+...+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 788889999999999999999999999999999999886454443433
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=5.2e-07 Score=73.97 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=73.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|...|++++..++. +...+..++.++...|++++|+..++++.. +|..+..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566667777777777777777777777776654 566777777777777777777777777766 56666777777777
Q ss_pred HhccccHHHHHHHHHHHHhcCCC
Q 006281 583 LADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+...|++++|+..++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77778888887777777776655
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=7.3e-07 Score=75.81 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..+...+.+.|++++|++.++++.. +|.++..+..++.+|...|++++|+..++++.+.+|......+ .++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHH
Confidence 566788899999999999999999999887 7778889999999999999999999999999999999855544 49999
Q ss_pred hhcCCCCchHHHHHHHHHHcc
Q 006281 618 LSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 618 ~~~~g~~~~a~~~~~~~~~~g 638 (652)
|...|++++|.+.+++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999887763
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=3.1e-06 Score=66.93 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++++..++. +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555555566666666666666666543221 4555555566666666666666666666555443 455566666666
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
...|++++|.+.+++... .|.++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 666666666666666555 33343343333
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.51 E-value=1.2e-06 Score=71.65 Aligned_cols=100 Identities=8% Similarity=-0.140 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..++..+...|++++|+..++++.. .|.++..+..++.++...|++++|+..++++.+.+|......+ .++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHH
Confidence 577889999999999999999999999877 7778889999999999999999999999999999999755444 49999
Q ss_pred hhcCCCCchHHHHHHHHHHccc
Q 006281 618 LSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 618 ~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
+...|++++|.+.++++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999887643
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=1.5e-06 Score=88.00 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=62.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|.+.++++++.++. +...+..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655544221 3555555555666666666666666666555544 45555556666666666666
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHH--HhccccHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKS--LADAREVEMAIEHIK 597 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 597 (652)
|++.++++.+ .|.+...+..++.+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665544 44444455544444 555566666666655
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=1.5e-05 Score=82.09 Aligned_cols=172 Identities=9% Similarity=-0.021 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE----------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET- 519 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 519 (652)
.++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777777664 4455666665555555555 78888888888876555 6777877777777888
Q ss_pred -CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc----------
Q 006281 520 -NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-HFLVATKLLRGLSS-DLGHSDSHVILLKSLADA---------- 586 (652)
Q Consensus 520 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~---------- 586 (652)
+++++++.++++++.++. +...|..-..++.+.| .++++++.++++.+ +|.+..+|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888888877 7778888888888888 78888888888776 677778888766666542
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCch
Q 006281 587 ----REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEP 626 (652)
Q Consensus 587 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (652)
+.++++++.++++...+|++. ..|..+...+.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~-saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQ-SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCS-HHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHhcCCCccc
Confidence 678999999999999999885 555558888888887655
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=9e-07 Score=89.23 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=94.1
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--------------ATTYTSLLEG 514 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~ 514 (652)
+++++|.+.|+...+.. +.....|..+...|.+.|++++|+..|++.++...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433321 23456777788888888888888888888886422211 4566677777
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
|.+.|++++|+..|+++++.++. +...+..+..+|...|++++|+..|+++.+ +|.+...+..++.++...|++++|.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776655 566677777777777777777777777766 5556667777777777777766654
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=4.4e-06 Score=67.44 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHH
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR---SILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLK 581 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~ 581 (652)
..+...+...|++++|...|++++...+. +. ..+..++.++.+.|++++|+..++++.. .|.+ +..+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888887776544 22 5677778888888888888888888766 4555 556778888
Q ss_pred HHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 582 SLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++...|++++|+..++++.+..|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 88888888888888888888888764
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=8.3e-06 Score=67.60 Aligned_cols=113 Identities=14% Similarity=0.026 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++++...+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 35566777777777888888888888887754 444 566777777788888888888888887776654 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
..+..++...|++++|.+.+++... .|.+...+..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7788888888888888888887766 555555555444443
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=9.8e-06 Score=81.46 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHh----hHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCccHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKG-VAPDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNH----D-VMLARSI 542 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 542 (652)
+..+...|...|++++|.+.+..+...- ..++.. ..+.+...+...|+++.|..++++.+.. + ......+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666666666666666654320 011111 1222222333456677777777665431 1 1123455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC---CCC---cHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSSD-------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESS---PTM---LQE 609 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~ 609 (652)
+..++..+...|++++|..+++++... +.....+..++..|...|++++|...++++.... +.+ ...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777765431 1112355567777777777777777777766532 111 133
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445566666777777777777665544
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=6.8e-07 Score=70.90 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=71.6
Q ss_pred cCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDV--MLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
..|++++|+..|+++++.+. +-+...+..+..+|...|++++|++.++++.+ .|.++..+..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888888741 12556788888889999999999999998877 6777888888999999999999999
Q ss_pred HHHHHHHhcCCCCcH
Q 006281 594 EHIKWIQESSPTMLQ 608 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~ 608 (652)
+.++++.+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 999999888887743
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=5.4e-07 Score=91.22 Aligned_cols=121 Identities=7% Similarity=-0.036 Sum_probs=101.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+...+.+.|++++|.+.|+++++..+. +...+..+..+|.+.|++++|++.++++.+ +|..+..+..++.+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444567889999999999999998776 688999999999999999999999999988 67788899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHH--hhcCCCCchHHHHHH
Q 006281 589 VEMAIEHIKWIQESSPTMLQEISAELFAS--LSSSSYPEPILLLLH 632 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 632 (652)
+++|++.++++.+.+|+......+ +..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMK-YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHH-HHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987544443 6666 788899999999887
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=2.1e-06 Score=69.41 Aligned_cols=99 Identities=10% Similarity=0.082 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC-------chhHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH-------SDSHV 577 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~~ 577 (652)
..+..+...+...|++++|...|++++...+. +...+..++.++...|++++|...++++.. .+.. +..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555556666666666666666666665543 455666666666677777777776666544 2222 44566
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++.++...|++++|++.++++.+..|+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6777777777777777777777777663
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=1.5e-06 Score=84.62 Aligned_cols=90 Identities=16% Similarity=0.044 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+..+|..+..+|.+.|++++|++.++++.+ +|..+..+..++.+|...|++++|++.++++.+.+|... .+...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-AIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 456788888888889999999999888877 666777888888999999999999999999999888774 444447777
Q ss_pred hhcCCCCchHHH
Q 006281 618 LSSSSYPEPILL 629 (652)
Q Consensus 618 ~~~~g~~~~a~~ 629 (652)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666665543
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=3.5e-06 Score=68.05 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSS-DLGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAELF 615 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 615 (652)
+..++..+...|++++|.+.++++.. .|.++ ..+..++.++...|++++|+..++++.+..|+. ....+. ++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK-LG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH-HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH-HH
Confidence 34567788999999999999999877 56555 588899999999999999999999999999987 344444 99
Q ss_pred HHhhcCCCCchHHHHHHHHHHcc
Q 006281 616 ASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999988763
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=3.7e-06 Score=67.96 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--cc----HHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LA----RSILS 544 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 544 (652)
..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++++...+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555555566666666666666554321 24455555555666666666666666655554321 11 44556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 580 (652)
.++.++...|++++|.+.++++....+++.....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666666666666666666655333443333333
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=1.2e-06 Score=84.44 Aligned_cols=149 Identities=9% Similarity=-0.017 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456677777788888888888888887754 333321 223344444443332 1367888899
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-hhcCCCCchH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS-LSSSSYPEPI 627 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 627 (652)
|.+.|++++|+..++++.. +|.+...+..++.+|...|++++|+..++++.+.+|.+... +..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a-~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI-RRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 77788889999999999999999999999999998887443 3336655 3456777888
Q ss_pred HHHHHHHHHcc
Q 006281 628 LLLLHALQEKC 638 (652)
Q Consensus 628 ~~~~~~~~~~g 638 (652)
.+.+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888877653
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=1.9e-06 Score=83.03 Aligned_cols=153 Identities=12% Similarity=-0.017 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456777888888999999999999998875 344332 233444444443321 1367888889
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH-hccccHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL-ADAREVEMA 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~-~~~g~~~~A 592 (652)
|.+.|++++|+..++++++.++. +...+..+..+|...|++++|++.++++.. +|.+...+..+..+. ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 778899999999999999999999999877 666677777777663 456678888
Q ss_pred HHHHHHHHhcCCCCc
Q 006281 593 IEHIKWIQESSPTML 607 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~ 607 (652)
...++++....|.+.
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999998888764
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=2.3e-06 Score=72.25 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555566666666665555432100 01 1234444444555555555555555443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=1.1e-05 Score=81.38 Aligned_cols=129 Identities=9% Similarity=0.018 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---------------LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 499 (652)
...|..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456667777777777777777777777652 222 467777777777777777777777777765
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH-HHHHh
Q 006281 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-LLRGL 566 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 566 (652)
... +...|..+..+|...|++++|...|+++++.++. +...+..+..++.+.|+.+++.+ .+.+|
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 5667777777777777777777777777776654 55567777777777777766653 34444
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=7.8e-05 Score=76.80 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL----------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
..++|++.++++...+.. +...|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778888888877443 45556665556666666 888899999888876 677888888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------
Q 006281 485 --EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-------- 553 (652)
Q Consensus 485 --~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 553 (652)
+++++++.++++.+...+ +..+|+.-...+.+.| .++++++.++++++.++. +...|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 679999999999987655 7888888888888888 899999999999998887 888888888777763
Q ss_pred ------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 554 ------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 554 ------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
+.++++++.++++.. +|.+..+|.-+.+.+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999988877 88899999999999888776443
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=7.5e-06 Score=67.04 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML------A-----RSILSTFMISLCRRGHFLVATKLLRGLSS------- 568 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 568 (652)
.+......+.+.|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455555666677777777777666655431 1 12455555555555555555555555432
Q ss_pred -CCCCchhH----HHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 569 -DLGHSDSH----VILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 569 -~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+|.....| ...+.++...|++++|++.|+++.+..|+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 23333444 555555555555555555555555555544
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=4.9e-06 Score=68.15 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------C
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAP------DA-----TTYTSLLEGLCQETNLQAAFEVFNKSVNH-------D 535 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 535 (652)
......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555555431110 11 14555555555555555555555555554 3
Q ss_pred CCccHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 536 VMLARSIL----STFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 536 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+. +...| .....++...|++++|+..|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33 33344 4555555555555555555555544
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=1.3e-05 Score=77.88 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=71.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...|..+..+|.+.|++++|++.++++++.++. +...+..+..+|...|++++|++.++++.+ +|.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777888888888899999988888887765 677888888888889999999988888876 66677777778888
Q ss_pred HhccccHHHHHH
Q 006281 583 LADAREVEMAIE 594 (652)
Q Consensus 583 ~~~~g~~~~A~~ 594 (652)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.0001 Score=73.87 Aligned_cols=197 Identities=11% Similarity=0.006 Sum_probs=122.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDM----------------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPD 434 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~ 434 (652)
...+.+.|++++|.+.|..+.+....... ..+..++..|...|++++|.+.+..+...-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567788888888888888776433111 1366777888888888888888877654311 112
Q ss_pred HH----HHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006281 435 VS----FYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK--GV-- 501 (652)
Q Consensus 435 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-- 501 (652)
.. +.+.+-..+...|+.+.+.++++..... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 2222333334557778888877766542 2122 2456677777788888888888887776542 11
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CCc-c--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 502 AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD---VML-A--RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 502 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
++ ....+..++..|...|++++|..++++++... ..| . ..++..++..+...|++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 13456677777778888888888887765421 111 1 23455566666677778888777776655
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=1.5e-06 Score=70.96 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=73.0
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----------FLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
+.+.+++|.+.+++.++.++. +...|..+..++...|+ +++|+..|+++.+ +|....+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345677788888888777776 77777777777777665 4589999998877 88888899999999987
Q ss_pred cc-----------cHHHHHHHHHHHHhcCCCCc
Q 006281 586 AR-----------EVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 586 ~g-----------~~~~A~~~~~~~~~~~~~~~ 607 (652)
.| ++++|++.|+++.+.+|+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 64 89999999999999999873
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=6.9e-06 Score=69.29 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----ch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGH----SD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~ 574 (652)
++..+...+...|++++|...+++++..... ....++..+...+...|++++|.+.+++... ...+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554432111 0012344555555555555555555555432 1111 12
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP-----TMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.+..++.++...|++++|++.++++.+..+ ......+..++..+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333455555555555555555555543311 11122333455555556666666665555443
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=1.2e-06 Score=69.41 Aligned_cols=85 Identities=12% Similarity=-0.098 Sum_probs=71.0
Q ss_pred hcCCHHHHHHHHHHhhhC----CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 552 RRGHFLVATKLLRGLSSD----LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
..|++++|+..++++... |..+..+..++.++...|++++|++.++++.+.+|+.....++ ++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF-YAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHcCCHHHH
Confidence 468899999999998875 5556678899999999999999999999999999998555554 99999999999999
Q ss_pred HHHHHHHHHc
Q 006281 628 LLLLHALQEK 637 (652)
Q Consensus 628 ~~~~~~~~~~ 637 (652)
.+.+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1.2e-05 Score=67.90 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEK--------GV--------AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.+......+.+.|++++|+..|++.++. .. .| +...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555432 00 11 2346677777777888888888888888777
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
++. +...|..++.+|...|++++|++.+++... +|.++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 665 667777788888888888888888887766 44444
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.9e-06 Score=67.42 Aligned_cols=93 Identities=12% Similarity=-0.061 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC------cHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM------LQEIS 611 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 611 (652)
+...+..+...+...|++++|++.++++.. .|.++..+..++.++...|++++|++.++++.+.+|+. ....+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677778888888888888888888766 66677788888888888888888888888888888876 33333
Q ss_pred HHHHHHhhcCCCCchHHHHHH
Q 006281 612 AELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 612 ~~l~~~~~~~g~~~~a~~~~~ 632 (652)
.++.++...|+++.|.+.++
T Consensus 83 -~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 -RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp -HHHHHHHHHHCCCCCSSSSS
T ss_pred -HHHHHHHHHHhHhhhHhHHH
Confidence 37777777777777655444
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=1.5e-05 Score=79.98 Aligned_cols=88 Identities=16% Similarity=0.065 Sum_probs=42.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-----CCC-c-cHHHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEK---GVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNH-----DVM-L-ARSILS 544 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 544 (652)
.+..+|++++|+.++++.++. -+-|+ ..+++.|...|...|++++|..+++++++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344556666666666555431 11111 234555555555566666666655554431 111 1 122355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 006281 545 TFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.|+..|...|++++|+.+++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555555555555544
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.04 E-value=3e-05 Score=57.76 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..+...+...|++++|++.+++... .|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH-HHHHHHH
Confidence 345667777778888888888888887766 56667777788888888888888888888888888876443 3336665
Q ss_pred hhc
Q 006281 618 LSS 620 (652)
Q Consensus 618 ~~~ 620 (652)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.8e-06 Score=65.06 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+..+...+...|++++|.+.|+++++..+. +...+..+..++.+.|++++|++.++++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444445555555555555555555554443 444455555555555555555555555544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.91 E-value=5e-05 Score=59.62 Aligned_cols=82 Identities=16% Similarity=0.002 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
+|++.|+++++.++. +...+..++.++...|++++|++.++++.. +|.....+..++.++...|++++|+..++++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777777776665 667777888888888888888888888766 666677778888888888888888888888877
Q ss_pred cCCC
Q 006281 602 SSPT 605 (652)
Q Consensus 602 ~~~~ 605 (652)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=0.00026 Score=57.60 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 559 (652)
+++++|++.|++..+.|. |+.. +...|...+.+++|.+.|++..+.+ ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666552 2222 4455555556666666666666653 34455556666665 5666677
Q ss_pred HHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcC
Q 006281 560 TKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESS 603 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 603 (652)
++++++..+. .++.++..|+..|.. .++.++|++.++++.+.+
T Consensus 81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7666666553 455666666666666 666777777776666654
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=2.9e-05 Score=60.99 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=68.9
Q ss_pred HHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 558 VATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 558 ~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777887766 67788889999999999999999999999999999988554 44599999999999999999998876
Q ss_pred c
Q 006281 637 K 637 (652)
Q Consensus 637 ~ 637 (652)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 5
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=2.2e-05 Score=64.07 Aligned_cols=86 Identities=9% Similarity=-0.052 Sum_probs=74.5
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV----------EMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+.+.+++|++.+++..+ +|.++..|..++.++...|++ ++|+..|+++.+.+|+.....++ ++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~-LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC-IGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHH
Confidence 456779999999999887 888999999999999888764 69999999999999998665555 999998
Q ss_pred cCC-----------CCchHHHHHHHHHHc
Q 006281 620 SSS-----------YPEPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g-----------~~~~a~~~~~~~~~~ 637 (652)
..| ++++|++.|+++.+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 774 899999999988876
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00021 Score=58.10 Aligned_cols=114 Identities=7% Similarity=-0.053 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAI 593 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 593 (652)
.+++++|.+.|++..+.+.. ... +...|...+..++|++++++..+. .++.++..++..|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999988843 322 777888888899999999998774 678889999999988 89999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhc----CCCCchHHHHHHHHHHcccc
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSS----SSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~ 640 (652)
+.++++.+.+ .... +..|+..|.. .+++++|.+.+++..+.|..
T Consensus 82 ~~~~~Aa~~g--~~~a-~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 82 QYYSKACGLN--DQDG-CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTT--CHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCC--CHHH-HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999874 3334 4449999988 89999999999999888653
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00016 Score=53.56 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+...+...|++++|...|++++...+. +...+..+..++.+.|++++|.+.++++.. +|.++..+..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34445555555666666666666665555443 445555666666666666666666666554 4445555555555544
Q ss_pred c
Q 006281 585 D 585 (652)
Q Consensus 585 ~ 585 (652)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=6.7e-05 Score=57.10 Aligned_cols=66 Identities=14% Similarity=-0.040 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+...+..+..+|...|++++|++.++++.+ +|..+..+..++.+|...|++++|++.++++.+..|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 567788888999999999999999998877 777888888999999999999999999998887654
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00014 Score=73.04 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=71.8
Q ss_pred HHHhcCChhhHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHH
Q 006281 444 ACCREDLLRPAKKLWDQMFAS-----G-CSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK-----GV-APD-ATTYT 509 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~ 509 (652)
.+...|++++|+.++++..+. | -.| ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445667777777777666543 1 011 2456677777777777777777777766531 21 111 23566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhh-----CCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVN-----HDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.|...|...|++++|..+++++++ .|.. ....+...+..++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776643 2221 1122344455555555666666666655543
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.71 E-value=8.2e-05 Score=56.45 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCch-hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSD-SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+..+.+.|++++|++.++++.+ +|.++. .+..++.++...|++++|++.++++.+.+|+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45566777888888888887766 566666 77778888888888888888888888888777543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.0002 Score=54.37 Aligned_cols=64 Identities=16% Similarity=-0.016 Sum_probs=43.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+...+..+...|...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666777777777777777777766654 555666677777777777777777766544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=0.00015 Score=54.98 Aligned_cols=86 Identities=6% Similarity=0.044 Sum_probs=55.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
....+...|++++|.+.|+++++.++. +.. .+..+..++...|++++|++.++++.. +|..+..+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 344566677777777777777776654 555 677777777777777777777777766 4444444321 55
Q ss_pred HHHHHHHHHHHHhcCCC
Q 006281 589 VEMAIEHIKWIQESSPT 605 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~ 605 (652)
+.++...+++....+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 56666666655554443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.53 E-value=0.00029 Score=52.24 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 538 LARSILSTFMISLCRRGH---FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++..+..+..++...++ .++|..++++... +|.++.+...++..+.+.|++++|+..|+++.+.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777888888765444 6888888888877 8888888888888888899999999999998888877
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.38 E-value=0.00094 Score=49.48 Aligned_cols=66 Identities=8% Similarity=-0.111 Sum_probs=30.7
Q ss_pred CCchhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 571 GHSDSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++..+..++.++...++ .++|..+++++++.+|++....+. ++..+...|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~-lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSL-IANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 345555555555555554333333 444455555555555555554444
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0025 Score=60.03 Aligned_cols=70 Identities=11% Similarity=-0.161 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++.++..+...+...|++++|.+.++++..-.++...+..++..+.-.|++++|++.++++...+|..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3677888888777778999999999999988435566777889999999999999999999999999874
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.0022 Score=60.39 Aligned_cols=70 Identities=9% Similarity=-0.232 Sum_probs=58.6
Q ss_pred hhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 566 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+...+..+..+..++..+...|++++|+..++++...+|+ ...+..++..+...|++++|.+.++++...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445677778888888888889999999999999999975 345555888999999999999999987765
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.0017 Score=52.30 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC---CCchhHHHHHHHHhccccHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG---HFLVATKLLRGLSSDL---GHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
....+.+.|.+....+. ++..+...+..++++.+ +.++++.+++.+.... ...+.+..++-++.+.|++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566777777777666 57888888899999988 5668999998887732 23556778899999999999999
Q ss_pred HHHHHHHhcCCCCc
Q 006281 594 EHIKWIQESSPTML 607 (652)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (652)
+.++.+++..|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999874
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.0016 Score=64.13 Aligned_cols=86 Identities=8% Similarity=-0.117 Sum_probs=55.3
Q ss_pred cCCCHHHHHHHHHHhhhC---CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCc---hhHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNH---DVML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-----D-LGHS---DSHVILL 580 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~~~---~~~~~l~ 580 (652)
..|++++|..+++++++. -+.| ...+++.++.+|...|++++|+.+++++.. - +..+ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567788888888776552 1111 234577777788888888888877776643 1 1122 2455677
Q ss_pred HHHhccccHHHHHHHHHHHHhc
Q 006281 581 KSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.92 E-value=0.0038 Score=56.26 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhh-CCCC-chhHHHHHHHHhcc-ccHHH
Q 006281 521 LQAAFEVFNKSVNHDVML-ARSILSTFMISLCRR-----GHFLVATKLLRGLSS-DLGH-SDSHVILLKSLADA-REVEM 591 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~~~-g~~~~ 591 (652)
...|...++++++.++.- +...|..++..|.+. |+.++|.+.|++..+ +|.. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 566777777777766542 355677777777774 888888888888877 5543 77777888887774 88888
Q ss_pred HHHHHHHHHhcCCC--CcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 592 AIEHIKWIQESSPT--MLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 592 A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
|.+.++++....|. +...+.+.+ .-++|..++.+..+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence 88888888887776 433333322 22556555555443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0026 Score=62.70 Aligned_cols=87 Identities=11% Similarity=-0.035 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCC-Ccc-HHHHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEK---GVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDV-MLA-RSILSTFM 547 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~ 547 (652)
..|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++++. .|. .|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999988752 22333 35788899999999999999999998865 232 222 34589999
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 006281 548 ISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.0076 Score=45.77 Aligned_cols=73 Identities=7% Similarity=-0.015 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSD--------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+..-...++..+.+.|++..|..+++.+... ...+..+..++.++.+.|++++|+.+++++.+..|+.....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445566777888888888888888776541 12334667888888889999999999999988888875443
Q ss_pred H
Q 006281 611 S 611 (652)
Q Consensus 611 ~ 611 (652)
.
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.014 Score=52.68 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHc-----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-CCH
Q 006281 486 IEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQ-----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-GHF 556 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 556 (652)
...|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|+++++.++.-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677778888765 555 5578888888888 499999999999999988754577888889999885 999
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 557 LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
++|.+.+++....++.......+.+. +.-++|..+++++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~----~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI----LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH----HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH----HHHHHHHHHHHHhHH
Confidence 99999999998865553122233333 333667667666543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.78 E-value=0.0062 Score=60.09 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=62.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC---CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCc---hh
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHD---VML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-----DL-GHS---DS 575 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~---~~ 575 (652)
+..+.+.|++++|..+++++++.. ..+ ...+++.++.+|...|++++|+.+++++.. -+ ..+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777776532 111 234577777778888888888887776643 11 122 34
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHh-----cCCCCc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQE-----SSPTML 607 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 607 (652)
+..|+..|...|++++|+.+++++.+ .+|+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 55788888888888888888887765 366653
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.012 Score=47.34 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET---NLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
...+.+-|.+..+.|. ++..+...+..++++++ +.++++.++++..+.+ +.-....+..+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4455666666666554 57777777888888877 5668888888888766 32245667778888889999999999
Q ss_pred HHHHhhh-CCCCchh
Q 006281 562 LLRGLSS-DLGHSDS 575 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~ 575 (652)
+++.+.+ +|.+..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 9988877 6555443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.045 Score=59.70 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=87.1
Q ss_pred HhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 376 CKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 376 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
...+++++|.+ ++..+. +......++..+.+.|..+.|+++.++-. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777766 442211 12233666777777888888876653211 112334567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.++.+. -.+...|..+...+.+.|+++.|.++|.++.+ |..+...+...|+.+...++-+.+...
T Consensus 672 ~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 877543 24667888888888888888888888887642 233444444466666555554443333
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
+. ++....+|.+.|++++|++++.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 12223344455666666555443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0062 Score=60.10 Aligned_cols=91 Identities=7% Similarity=-0.149 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC------CCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhc-----CCCCc--HHH
Q 006281 547 MISLCRRGHFLVATKLLRGLSSD------LGHS---DSHVILLKSLADAREVEMAIEHIKWIQES-----SPTML--QEI 610 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~ 610 (652)
+..+.+.|++++|+.++++..+. +.++ .++..++.+|...|++++|+.+++++++. +|+.+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999988651 1222 35668999999999999999999998753 55554 344
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 611 SAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.|+.+|...|++++|+.+++++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 567999999999999999999987753
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.66 E-value=2.3e-06 Score=81.59 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (652)
.+.+|..|..+....+.+.+|++.|=+ . -|+..|..++.+..+.|.+++-.+.+...++. ..++.+-+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHH
Confidence 344566666666666666555544311 1 14555666666666666666666666555543 2223444556
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (652)
Q Consensus 233 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 284 (652)
+-+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 666666666544333221 244444444555555555555554444
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.13 Score=56.12 Aligned_cols=100 Identities=8% Similarity=-0.014 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 006281 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (652)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (652)
..++..+.+.|..+.|.++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~--------~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE--------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC--------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh--------CcHhHHHHHHHHHH
Confidence 555566666666666665542111 1122334556666666664322 33456666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 286 (652)
+.|+++.|.++|..+.. |..+...+...|+.+....+-+.
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77777777777766542 22333334445555544444333
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.18 E-value=0.77 Score=47.24 Aligned_cols=115 Identities=9% Similarity=0.005 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYT----SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+.|...|....+.. ..+..... .+.......+...++...+........ +.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777775432 12322222 222223334424455555555443332 333344444445567888888
Q ss_pred HHHHHHhhhCCC-CchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 560 TKLLRGLSSDLG-HSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 560 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.+.|+.+..... .+....-++.++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887766432 333455666777777888888888887765
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.16 E-value=0.029 Score=43.36 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCC-C--CchhHHHHHHHHhccccHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV---ATKLLRGLSSDL-G--HSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
....+.+.|.+....+. ++..+-..+..++.+.....+ ++.+++.+.... + .-+....++-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555555444 466666667777777776555 777777766632 1 2234557777888888888888
Q ss_pred HHHHHHHhcCCCCc
Q 006281 594 EHIKWIQESSPTML 607 (652)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (652)
+.++.+++..|++.
T Consensus 95 ~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 88888888888773
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.11 E-value=1.9 Score=46.22 Aligned_cols=256 Identities=11% Similarity=0.024 Sum_probs=132.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCC-------CcCHHHHHHHHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDY-------FTDMESYNVMVS 408 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 408 (652)
++....++.++++.+++.....+...+..+ -..+.-+....|..+++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 344556788888777766554221123222 22333345556665667776666554311 011112222323
Q ss_pred HH--HhcCCHHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 409 FL--CTSGRLREAYGVIQEMKRKGLDPDVSF--YN--SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 409 ~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
++ .-.++ +++.+.+..+.... +..+ .. ++...+.-.|+.+....++..+.+.. ..+..-...+.-++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 33 33344 45566666665432 2211 22 22233445677777777777776532 2222222333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYT--SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
.|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+..... .+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHH
Confidence 78888888888888763 222222111 234456778888777778887765432 23333344444455567766667
Q ss_pred HHHHHhhhCCCCchhHH--HHHHHHhccccH-HHHHHHHHHHHh
Q 006281 561 KLLRGLSSDLGHSDSHV--ILLKSLADAREV-EMAIEHIKWIQE 601 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~~~~ 601 (652)
++++.+.... ++.... .++-+....|+. .+|++.+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7776665532 333322 222223333332 678888888864
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.05 E-value=0.069 Score=40.33 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD------VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
..-+..+...+.+.|+++.|...|+++++.. ......++..+..++.+.|++++|..+++++.. +|.++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455666666666666666666655421 123456677777777777777777777777765 4544433
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.92 E-value=0.085 Score=40.80 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH---HHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA---AFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.....+.+-|.+....|. |+..+-..+..++.++.+... ++.++++....+ +.-.......|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555566665555444 677777778888888876665 888888877765 322455667788889999999999
Q ss_pred HHHHHHhhh-CCCCchhH
Q 006281 560 TKLLRGLSS-DLGHSDSH 576 (652)
Q Consensus 560 ~~~~~~~~~-~~~~~~~~ 576 (652)
.+.++.+.+ +|.+..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999887 66555443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.58 E-value=0.59 Score=36.22 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.. |-.-|. ...|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHHHHH
Confidence 45555556655555542 23444444444443333333333333332 111111 234444444444
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+-.+- .+....+..+..+...|+.+.-.+++..+ ...++.++....++.+|.+.|+..+|-++++++=+.+.
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43221 13334555566666677777777777664 44555666666777777777777777777777666653
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.31 E-value=0.16 Score=40.27 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=62.0
Q ss_pred CHhhHHHHHHHHHcCCCH------HHHHHHHHHhhhCCCCccH-HHHHHHHHH------HHhcCCHHHHHHHHHHhhhC-
Q 006281 504 DATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR-SILSTFMIS------LCRRGHFLVATKLLRGLSSD- 569 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~- 569 (652)
|..+|-..+....+.|++ ++..++|++++..-+ |+. ..+...+.. +...++.++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455566566555555666 666666666655322 221 111111111 12347788888888877552
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..-+-.|...+.--.+.|+..+|.+++.++....|.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 11244566666666788899999999998888888763
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.31 E-value=0.0069 Score=58.37 Aligned_cols=175 Identities=12% Similarity=0.090 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
|+..|..++.++.+.|.++.....+.-.++.. .++.+=+.|+-+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 45557777777777777777777776555543 333444567777777777554333221 345555566666
Q ss_pred HHHhcCChhhHHHHHHHHHhCC--------------------CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCC
Q 006281 163 VLASDGYIDNALKMFDEMSHRG--------------------VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 222 (652)
-|...|.++.|.-+|..+.... -.-++.||-.+-.+|...+++.-|.-.--.+.-.....
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL 232 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 232 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH
Confidence 6666666666666655542210 01255677777777777777666655544444331111
Q ss_pred CCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 006281 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (652)
Q Consensus 223 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (652)
+. ++..|-..|.+++-+.+++.-... -......|+-|.-.|++-
T Consensus 233 ~e-------lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 233 EE-------LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SG-------GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HH-------HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 11 555667777777777777766532 123455666666666554
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.30 E-value=1 Score=37.26 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQM 461 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 461 (652)
...|..|.......|+++-|.+.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444433
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.30 E-value=0.089 Score=42.73 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 583 (652)
+..+-..+..+|.+.|++++|+.+++.++....++.....|+..|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 344545567777777777777777777776555666666666554
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.07 E-value=1.2 Score=36.82 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
....|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 33455555555554443 2344555555555555555555555554421 23333344444544444
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 213 (652)
..+-+.....| -++.....+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 43333333322 13333333444455555555443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.46 E-value=0.5 Score=37.52 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCChhhHHHHHHHHHHcC
Q 006281 399 DMESYNVMVSFLCTSGRL------REAYGVIQEMKRKGLDPDVS----FYNSLME---ACCREDLLRPAKKLWDQMFASG 465 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~----~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 465 (652)
|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|-.+.- .+...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555665 6666677666553 333311 0111100 1123367777777777776552
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
-.- ...|....+--.++|+...|.+++.+.+..+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 5555555555666777777777777777665554
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.31 E-value=1.4 Score=34.16 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=86.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHH
Q 006281 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (652)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 208 (652)
+.-.|.+++..++..+..... +..-||-++--....-+-+-..++++.+-+. .|.. ..|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 345677888888888776643 5566776666666555555555555554321 1211 12333333
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 288 (652)
...+-.+.. +.......++.....|+-++-.+++..+... -+|+....-.+..+|.+.|+..++.+++.+.-
T Consensus 81 i~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 81 VECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333322211 1334445666777788888888888886442 45677777788888888888888888888887
Q ss_pred hcCCC
Q 006281 289 KLGVA 293 (652)
Q Consensus 289 ~~~~~ 293 (652)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 77764
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.2 Score=52.55 Aligned_cols=127 Identities=16% Similarity=0.128 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhC------CCC-cc-----
Q 006281 474 NILISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNH------DVM-LA----- 539 (652)
Q Consensus 474 ~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~-~~----- 539 (652)
..++..+...++ ++.|..+|+++......-+......++..+...+ +--+|.+++.+.++. ... .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555555 5779999999887632212222223333333333 234566767665531 110 01
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 540 -----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 540 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
...+..=++.+...|+++-|+++.++... .|....+|..|+.+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222224446677888888888888877 66777888888888888888888887776653
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.01 E-value=0.67 Score=36.48 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred CCccHHHHHHHHHHHHhcCCH---HHHHHHHHHhhh-CCC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 536 VMLARSILSTFMISLCRRGHF---LVATKLLRGLSS-DLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|+..+-..+..++.+.... .+++.+++.+.. .+. .-+....++-++.+.|++++|.++.+.+++..|++.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 357888888899999988765 467888888766 332 234556899999999999999999999999999884
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.86 E-value=0.65 Score=36.05 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=52.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCH---HHHHHHHHHhhh-CCC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 535 DVMLARSILSTFMISLCRRGHF---LVATKLLRGLSS-DLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+..|++.+-..++.++.+..+. .+++.+++.+.. .+. .-+.+..++-++.+.|++++|.+..+.+++..|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4556777777778888877654 467777777765 321 234556788888888888888888888888888874
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.60 E-value=2.9 Score=41.23 Aligned_cols=187 Identities=12% Similarity=0.090 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHH----hc
Q 006281 414 GRLREAYGVIQEMKRK-----GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFS----EV 483 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~~ 483 (652)
|++++|++.+-.+.+. ...........++..|...++++...+.+.-+.+. |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6778888777665542 12334556777788888888888877777665543 32222 2223333222 12
Q ss_pred CCHHHH--HHHHHHHHH--CC-CCC---CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCcc---HHHHHHHHHHH
Q 006281 484 GEIEGA--LRLFHNMLE--KG-VAP---DATTYTSLLEGLCQETNLQAAFEVFNKSVN--HDVMLA---RSILSTFMISL 550 (652)
Q Consensus 484 g~~~~A--~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~ 550 (652)
...+.. ..+.+.... .| +-. .......|...+...|++.+|..++.++.. .+.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 01 000 011223455556666666666666665532 111111 22344455556
Q ss_pred HhcCCHHHHHHHHHHhhh----CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 551 CRRGHFLVATKLLRGLSS----DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
...+++.+|..++.++.. .+..+. .+...+..+...+++.+|-..|.++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 666666666666665432 222221 2234455555566666666665555544
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.57 E-value=4.4 Score=37.26 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH----HHHHHHhCCCccCcccHHHHH
Q 006281 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK----MFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll 196 (652)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34556666777788888887766542 22344555444443 345555566666666665555
Q ss_pred HHH
Q 006281 197 WKF 199 (652)
Q Consensus 197 ~~~ 199 (652)
..+
T Consensus 100 ~l~ 102 (312)
T 2wpv_A 100 RLI 102 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.41 E-value=0.77 Score=51.76 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=107.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV------------------- 501 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------------------- 501 (652)
++..+.+.+..+.+.++..-. +.+....-.+..+|...|++++|.++|++... |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444555666666555543322 23333334455566667777777777765421 11
Q ss_pred ----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 502 ----APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 502 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
..-..-|..++..+.+.|.++.+.++-+.+++....-+ ...|..+.+.+...|++++|...+-.++......
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 00112356677778888888888888777665332112 2257778888888899999988888777654555
Q ss_pred hhHHHHHHHHhccccHH------------HHHHHHHH-HHhc-CCCCcHHHHHHHHHHhhcCCCCchHH-HHHHHHHHc
Q 006281 574 DSHVILLKSLADAREVE------------MAIEHIKW-IQES-SPTMLQEISAELFASLSSSSYPEPIL-LLLHALQEK 637 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~------------~A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 637 (652)
+....|+..++..|..+ +..+++.. +... ++...+..|..|..-+...|++..|- -+|+.+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 56666666665554443 33344432 1111 22332344554555555666665554 455555443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.17 E-value=1.5 Score=34.08 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCCCHhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 500 GVAPDATTYTSLLEGLCQETN---LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
+-.|+..+--.+..++.++.+ ..+++.++++..+.++.-....+-.+.-++.+.|++++|.++.+.+.+ +|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 445666666667777777664 456888888888776544566777788889999999999999998887 5555443
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.16 E-value=1.8 Score=34.10 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCHhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 502 APDATTYTSLLEGLCQETN---LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
.|+..+--.+..++.++.+ ..+++.++++....++.-....+..+.-++.+.|++++|.++.+.+.+ +|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 5566666666666766654 446777777776655543555666677777788888888888877776 44443
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.74 Score=48.32 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCHHH-H-HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-CHh
Q 006281 438 YNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKT-Y-NILISKFSEVG-EIEGALRLFHNMLEK------GVAP-DAT 506 (652)
Q Consensus 438 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~g-~~~~A~~~~~~m~~~------~~~p-~~~ 506 (652)
...++..+...++ .+.|..+|+++.+.. |.... + ..++..+...+ +--+|.+++.+.++. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555655666 588999999998874 43333 2 23333333333 233567777666531 1111 111
Q ss_pred ----------hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 507 ----------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 507 ----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
....=.+-|...|+++.|+++-++++..-+. +-.+|..|+.+|...|+++.|+-.+..++.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 1111233466789999999999999988876 788999999999999999999999998875
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.85 E-value=0.63 Score=41.30 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=26.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+.|.++++++....-++..+. |...-..|++.+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555555555444 444455555555555555555554444433
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.68 E-value=8.3 Score=35.74 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHhhHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF----HNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~ 512 (652)
+|.++..-|.+.+++++|++++..-. ..+.+.|+..-|.++- +-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555677777777777654332 1233344444433332 3334456666666666666
Q ss_pred HHHHcCCC--HHHHHHHHHHhhh------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh
Q 006281 513 EGLCQETN--LQAAFEVFNKSVN------HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584 (652)
Q Consensus 513 ~~~~~~g~--~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 584 (652)
..+..... ++ =..+.+++++ ....-++.....+...|.+.+++.+|+..|- .-+.+.++.+..+..-+.
T Consensus 102 ~L~~~~~~~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 102 GCLRLFQPGEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHHTTSCTTCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHH
Confidence 65554332 11 1223333322 2233467788888999999999999988772 222111233332222222
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.+.+|..........+--|...|+...|...++.+.++
T Consensus 179 ---------------~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 179 ---------------KQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp ---------------HTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------HhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22223322222222555577888999999888777764
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.35 E-value=12 Score=36.84 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=31.9
Q ss_pred ccChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006281 61 LTHHSLALGFFNWASQ----QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (652)
.++++.|++-+.-+.+ ......+......++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566667666554432 233445566677777777777777777666655444
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.02 E-value=1.3 Score=42.37 Aligned_cols=25 Identities=12% Similarity=-0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQM 461 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~ 461 (652)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.88 E-value=8.1 Score=43.55 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
.++..+.+.+..+.+.++...... +...--.+..+|...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455556667777776665443322 3334445667788888888888888764
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.81 E-value=1.2 Score=36.21 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
..-|. +..+|.+.|++++|+.+++.
T Consensus 123 Elkyk-ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYK-LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHCCHHHHHHHHhc
Confidence 44466 88899999999999998874
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.24 E-value=1.6 Score=42.10 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 507 (652)
++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4445555666666666665555543 44555666666666666666666666655432 355555443
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.91 E-value=1 Score=43.61 Aligned_cols=59 Identities=8% Similarity=-0.050 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
....++..+...|++++|...+..+.. +|.+...+..++.++...|+..+|++.|+++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666677777777776666655 56666667777777777777777777776654
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.62 E-value=4.6 Score=35.87 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHF 556 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 556 (652)
...+.|++++|++....-++.... |...-..++..+|-.|++++|.+-++...+.++... ...|..+|.+-...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R--- 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR--- 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH---
Confidence 445677777787777777766433 666667777777888888888877776666554322 22344444331110
Q ss_pred HHHHHHHH--HhhhCCCCchhHH-HHHHHH--hccccHHHHHHHHHHHHhcCCC
Q 006281 557 LVATKLLR--GLSSDLGHSDSHV-ILLKSL--ADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 557 ~~A~~~~~--~~~~~~~~~~~~~-~l~~~~--~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+ ++|. ..+.-...+..|. .++.+. ...|+.++|.++-.++.+..|.
T Consensus 82 -~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 82 -K--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -H--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -H--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 0 0111 1122233344444 444444 3457888888877777766544
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.07 E-value=32 Score=37.10 Aligned_cols=260 Identities=15% Similarity=0.103 Sum_probs=142.5
Q ss_pred HHHccCCHHHHHHHHHHHHcCCCCCCHHH-HHHHH--HHHhcCChhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 006281 305 GLIVERRICEAKELGEVIVSGKFTIDDDV-LNALI--GSVSSIDPRSAIVFFNFMIEKGR--V-----PTLSTLSNLSKN 374 (652)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~--~~~~~~~~~~a~~~~~~m~~~~~--~-----~~~~~~~~l~~~ 374 (652)
+.+..|+.+++..+++.....+...+..+ ..+++ +....|..+++..++...+...- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777777777665554321223333 22222 22334544567887777664321 1 111112222223
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcC
Q 006281 375 LCKRNK-SDELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM--EACCRED 449 (652)
Q Consensus 375 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll--~~~~~~g 449 (652)
++-.|. -+++.+.+..+....- +... .--++...++-.|+.+....++..+.+.. +..+...+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 332332 2355555555554321 1111 11233444556788888888888776542 333333333 3445779
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 450 LLRPAKKLWDQMFASGCSGNLKTYN--ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
+.+.+..+++.+.... .|....-. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999999999888642 33333222 3445677888987777799988864 222333333333345556777777777
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHF-LVATKLLRGLSSDLG 571 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 571 (652)
++.+... ..|....-..+..+....|.. .+++..+..+..++.
T Consensus 617 v~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d 660 (963)
T 4ady_A 617 VQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPV 660 (963)
T ss_dssp TTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSS
T ss_pred HHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCC
Confidence 7754443 344555445555555556553 688889999887543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.01 E-value=6.2 Score=28.77 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++|+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.89 E-value=3.2 Score=30.20 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 408 (652)
|.-+..+-++.+...++.|++..+.+.+++|.+.+++..|+++|+.+..+--. ....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44456666677777778888888888888888888888888888877754322 2334555543
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.66 E-value=3.3 Score=37.66 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=5.8
Q ss_pred HHHHHcCCChhHH
Q 006281 126 IPSLIQGKNTQKA 138 (652)
Q Consensus 126 i~~~~~~g~~~~a 138 (652)
+...++.|+.+..
T Consensus 9 L~~A~~~g~~~~v 21 (285)
T 1wdy_A 9 LIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3334455554433
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.67 E-value=11 Score=29.17 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.+-++.+...++.|++......+.+|.+.+++..|+++|+-.+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555554444
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.13 E-value=33 Score=31.47 Aligned_cols=80 Identities=15% Similarity=-0.052 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHHcCCCCCHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLWDQMFASGCSGNLKTYNI 475 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (652)
++.....+...|.+.|++.+|...|-. |..-|...+..++.-+... |...++- ...-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH
Confidence 666777788888888888887776641 1111344444444444333 3322211 111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+--|.-.|+...|..+|+...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223445677777777777665
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.67 E-value=16 Score=28.33 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
.-+..+-+..+...++-|++.+....+++|.+.+++..|+++|+-++..- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455555555566666666666666777766677777777666665431 222334554443
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.07 E-value=24 Score=34.39 Aligned_cols=58 Identities=9% Similarity=-0.060 Sum_probs=29.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 230 VLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 230 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
..+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.+.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34555555555555555555555432 11222334445555555556666555555554
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.70 E-value=51 Score=31.54 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 006281 87 YHSILKSLSLSRQINAIDSVLKQV 110 (652)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~ 110 (652)
...+...|.+.|+.++..+++...
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555555555555555544
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.96 E-value=19 Score=26.13 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006281 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (652)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 472 (652)
..+...|++++|..+.+.+. .||...|-.|.. .+.|..+++...+.++..+| .|....
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~ 105 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQT 105 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHH
Confidence 34455666666665555443 456555554432 35555555555555555554 343333
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.90 E-value=30 Score=33.75 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCccHHH--H
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN---HDVMLARSI--L 543 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~--~ 543 (652)
.+...+...|.+.|++++|.++|.++.+. +..--...+...++.+...+++..+...++++.. .+..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46778889999999999999999999864 2333356777888888899999999999988643 333333221 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
..-+..+...+++.+|.+.|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22233344678888888887776553
No 269
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=74.05 E-value=26 Score=32.60 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.1
Q ss_pred HHHHHHCCCCCC
Q 006281 493 FHNMLEKGVAPD 504 (652)
Q Consensus 493 ~~~m~~~~~~p~ 504 (652)
.+-+++.|-.||
T Consensus 317 v~~Ll~~GA~~d 328 (337)
T 4g8k_A 317 VKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHTTCCC-
T ss_pred HHHHHHCcCCCC
Confidence 334445554444
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.84 E-value=18 Score=26.22 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 006281 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (652)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 465 (652)
..+...|++++|..+.+.+. .||...|-.|.. .+.|..+++...+.++..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455566666655544432 455555544422 35555555555555555544
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.55 E-value=1e+02 Score=31.71 Aligned_cols=203 Identities=6% Similarity=-0.020 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYN----VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
.+.+.|...+....+.... +..... .+.......+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 3677888888777543322 222222 22223333442445556666554432 3333333444445567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
...|+.|.... .......--+..++...|+.++|..+|+.+.+. . +|-.++. ..+.|..-. . . ....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~-~---~-~~~~ 371 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYE-L---K-IDKA 371 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCC-C---C-CCCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCC-C---C-CCCC
Confidence 88888776532 122333444556677788888888888887642 1 2332221 122232100 0 0 0000
Q ss_pred CCCccH--H--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 535 DVMLAR--S--ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 535 ~~~~~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
...... . --...+..+...|....|...+..+.... ++.....++......|.++.++.....
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000000 0 11223455778899999988888776642 344445666666778888877765544
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.81 E-value=25 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=11.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHH
Q 006281 194 VFIWKFCENAKLGQVLSMLDEV 215 (652)
Q Consensus 194 ~ll~~~~~~g~~~~a~~~~~~~ 215 (652)
.+|.-|...|+.++|...++++
T Consensus 59 ~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 59 PIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.34 E-value=25 Score=31.55 Aligned_cols=44 Identities=7% Similarity=0.019 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCCHHHHH
Q 006281 273 LMGSVFEREVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAK 316 (652)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~ 316 (652)
..++.....++++.+.+.|..++... -.+.+...+..|..+-+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 34444344455556666665554321 112334444455544433
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.01 E-value=1.2e+02 Score=31.45 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 006281 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (652)
Q Consensus 231 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (652)
.+|-.+.|+|++++|.++.++.... +.--...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4666788888888888888766432 11011244455555553
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.41 E-value=60 Score=27.36 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 451 LRPAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
..++.++|..|...|+-- -..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555553322 23344455555555556666666665555554444
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.61 E-value=41 Score=24.44 Aligned_cols=77 Identities=13% Similarity=-0.005 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
..++|..+-+-+...+. ....-.+-+..+.+.|++++|..+.+.+- .||...|-.|... +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34455554444444332 11111222233445555555555443332 4555555444332 4455555555554
Q ss_pred HHHHC
Q 006281 495 NMLEK 499 (652)
Q Consensus 495 ~m~~~ 499 (652)
++...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.29 E-value=43 Score=24.40 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=23.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 499 (652)
.+.+.|++++|..+.+.+- .||...|-.|... +.|..+++..-+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 3445555555555444332 4555555444332 344444444444444433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.86 E-value=71 Score=26.92 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc
Q 006281 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259 (652)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 259 (652)
...+..+|..|..+ +.....+..|......+-..|++.+|.++|+.-.+++..|
T Consensus 95 ~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44566666666666 5555556666666666666677777777776666665555
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.41 E-value=31 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 006281 369 SNLSKNLCKRNKSDELVEVYKVLS 392 (652)
Q Consensus 369 ~~l~~~~~~~~~~~~a~~~~~~~~ 392 (652)
..++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 344555556666666666666554
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.04 E-value=22 Score=28.44 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=24.4
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc
Q 006281 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259 (652)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 259 (652)
+..+|..|..+ +.....+..|......+-..|++.+|.++|+.-.+++-.|
T Consensus 84 p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNH-GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTT-TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33444444444 3344444444444555555555555555555555544444
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.92 E-value=25 Score=28.55 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcC
Q 006281 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD 260 (652)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 260 (652)
+..+|..|..+ +.....+..|......+-..|++.+|.++|+.-.+.+..|-
T Consensus 79 p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 33444444444 44444445555555555555555555555555555544443
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.90 E-value=51 Score=28.48 Aligned_cols=85 Identities=7% Similarity=-0.055 Sum_probs=41.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHH---hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHH
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSS---VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLA 165 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 165 (652)
+...+..|+.+.+..+++.+.+.+..++.. -.+ .+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 445556777777777777666655433322 122 233334455543 3334444454443321 122334445
Q ss_pred hcCChhhHHHHHHHH
Q 006281 166 SDGYIDNALKMFDEM 180 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m 180 (652)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 566665555555443
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.81 E-value=63 Score=31.36 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHhcCcHHHHHHHHH
Q 006281 198 KFCENAKLGQVLSMLD 213 (652)
Q Consensus 198 ~~~~~g~~~~a~~~~~ 213 (652)
..+..|+.+.+..+++
T Consensus 119 ~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 119 IAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4455666665555554
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.28 E-value=36 Score=28.44 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=6.0
Q ss_pred hcCChhHHHHHHH
Q 006281 96 LSRQINAIDSVLK 108 (652)
Q Consensus 96 ~~~~~~~a~~~~~ 108 (652)
..|+.+.+..+++
T Consensus 14 ~~g~~~~v~~ll~ 26 (201)
T 3hra_A 14 NQRDTKKVKEILQ 26 (201)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhccHHHHHHHHH
Confidence 4455554444443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.90 E-value=1.5e+02 Score=27.80 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHcCC
Q 006281 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL--LRPAKKLWDQMFASGC 466 (652)
Q Consensus 403 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~ 466 (652)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 466677777778888888877777532211 23334444444443322 3445566666665553
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.69 E-value=69 Score=24.73 Aligned_cols=64 Identities=9% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC--HHHHHHHHHHhhhCCCC
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN--LQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 537 (652)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+....++..+...++-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455677777777778887777776421111 22333444444544432 34566666666655544
No 287
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.79 E-value=45 Score=28.21 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhCCCCccHH--H-----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 521 LQAAFEVFNKSVNHDVMLARS--I-----LSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
.+.|+-+|+.+.+...-++.. . -...+..|.+.|.+++|.+++++...+.++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 678888888765544222211 1 1233455778888999998888887754333
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.53 E-value=52 Score=27.39 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcc---cHHHHHHHHHhcCcH
Q 006281 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI---GFGVFIWKFCENAKL 205 (652)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~ 205 (652)
.+..|+.+....++..-...-...+..-++. +...++.|+.+-+.. +.+.|..++.. ..+. +...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEIAKA----LIDRGADINLQNSISDSP-YLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCH-HHHHHHcCCH
Confidence 3456666666665543211101112222333 344455666554443 44445444322 2233 3345566776
Q ss_pred HHHHHHHHH
Q 006281 206 GQVLSMLDE 214 (652)
Q Consensus 206 ~~a~~~~~~ 214 (652)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 665555543
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.84 E-value=1.6e+02 Score=26.33 Aligned_cols=144 Identities=12% Similarity=0.026 Sum_probs=67.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhc
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE---ICNSLLAVLASD 167 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~ 167 (652)
+...+..|+.+.+..+++ .|..++...-.+.+...+..|+.+-+..+ .+.|..++.. -++ .+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 444556777766555554 34333322222334444566665544433 3445444332 223 33444566
Q ss_pred CChhhHHHHHHHHHhCCCccCc---ccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHH
Q 006281 168 GYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244 (652)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 244 (652)
|+.+-+..+++. |..++. ..+.+.+...+..|+.+-+.-++ +. |....+...-.+.+...+..|+.+-
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~-g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SE-IPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TT-SCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hC-CCccccccCCccHHHHHHHcChHHH
Confidence 766655544443 443332 22234444556667665444333 33 3233222122234445566777766
Q ss_pred HHHHHHHH
Q 006281 245 AFKVLDEL 252 (652)
Q Consensus 245 A~~~~~~m 252 (652)
+.-+++.-
T Consensus 177 v~~Ll~~g 184 (285)
T 3kea_A 177 MILLLDYM 184 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 66665543
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.76 E-value=1.8e+02 Score=26.65 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 490 LRLFHNMLEKGVAPDA--TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
+++---+....++|.. .++..-+..+.+.+++..|..+-+++++.++.
T Consensus 190 lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 190 LELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3333333333444433 24455566677788888888888888777654
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.32 E-value=37 Score=29.17 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc
Q 006281 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259 (652)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 259 (652)
.+..+|..|..+ +.....+..|......+-..|++.+|.++|+.-.+++-.|
T Consensus 132 ~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555555555 4455555555555555666666666666666655554444
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.04 E-value=1.1e+02 Score=26.11 Aligned_cols=84 Identities=10% Similarity=0.013 Sum_probs=41.8
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccH--HHHHHHHHhc
Q 006281 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF--GVFIWKFCEN 202 (652)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~ 202 (652)
...+..|+.+....+++.+...+..++... -.+.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344556777777777776665554444321 12334445556665433 334445544332211 1233344566
Q ss_pred CcHHHHHHHHHH
Q 006281 203 AKLGQVLSMLDE 214 (652)
Q Consensus 203 g~~~~a~~~~~~ 214 (652)
|+.+-+..+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 666655555544
No 293
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=44.47 E-value=1.7e+02 Score=26.85 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 006281 89 SILKSLSLSRQINAIDSVLK 108 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~ 108 (652)
..|...++.|+.+.+..+++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34444556777766655554
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.36 E-value=1.2e+02 Score=24.21 Aligned_cols=51 Identities=12% Similarity=0.303 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 453 PAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
++.++|..|...|+-- -..-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3555666665554322 23344455555555566666666666655555444
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.51 E-value=65 Score=25.79 Aligned_cols=64 Identities=9% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC--HHHHHHHHHHhhhCCCC
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN--LQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 537 (652)
.+.++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455677777777777777777776421111 22333444444444322 34556666666655544
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.25 E-value=23 Score=30.67 Aligned_cols=13 Identities=8% Similarity=-0.141 Sum_probs=6.0
Q ss_pred HHccCCHHHHHHH
Q 006281 236 FCKGKRVEEAFKV 248 (652)
Q Consensus 236 ~~~~g~~~~A~~~ 248 (652)
.++.|+++....+
T Consensus 16 A~~~g~~~~~~~L 28 (240)
T 3eu9_A 16 ATQYGIYERCREL 28 (240)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCChHHHHHH
Confidence 3455555444333
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.86 E-value=1.2e+02 Score=26.32 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLR 564 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (652)
+......+..+.+.|+-++|.++|=
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3344444555555555555555543
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.07 E-value=1.2e+02 Score=27.07 Aligned_cols=10 Identities=20% Similarity=-0.097 Sum_probs=4.1
Q ss_pred HHHhCCCCcC
Q 006281 390 VLSANDYFTD 399 (652)
Q Consensus 390 ~~~~~~~~~~ 399 (652)
.+.+.|..++
T Consensus 213 ~Ll~~gad~~ 222 (285)
T 3kea_A 213 ALFKYDINIY 222 (285)
T ss_dssp HHTTSCBCST
T ss_pred HHHHcCCCCC
Confidence 3344444443
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.84 E-value=1.3e+02 Score=24.33 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHhCCCCC--ChhhHHHHHH------HHHhcCChhhHHHHHHHHHh
Q 006281 133 KNTQKAFSVFNEVKFNCEDI--GPEICNSLLA------VLASDGYIDNALKMFDEMSH 182 (652)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~------~~~~~~~~~~a~~~~~~m~~ 182 (652)
|++-+|.++|+..-.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665543333 3334555555 12345777777777766544
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.04 E-value=1.5e+02 Score=23.70 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 432 (652)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 445666677778888888887776421111 22233344444444322 34566677777666543
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.59 E-value=34 Score=30.23 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHH-------hHHHHHHHHH--cCCChhHHHHHHHHHH
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSS-------VYRFIIPSLI--QGKNTQKAFSVFNEVK 146 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~~~ 146 (652)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 445557788888777777776666544432 2234443332 5577666666666543
No 302
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.59 E-value=3.4e+02 Score=28.03 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 006281 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308 (652)
Q Consensus 263 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 308 (652)
.| .++-.|.+.|+.++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 55 4666788999999999988665432 11111355556666653
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.68 E-value=3e+02 Score=26.85 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=51.6
Q ss_pred HHHHHhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 006281 50 SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (652)
Q Consensus 50 ~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (652)
+++.-+...+ .++++|+++-.. .|++=-...|..-...+...|++.+|-.+--...+ |+-.+..|.+.+-..=
T Consensus 333 ~ivpyi~~~l--~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 333 NIIPYITNVL--QNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVP 405 (494)
T ss_dssp THHHHHHHTT--CCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSC
T ss_pred cchhhhhhcc--CCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCC
Confidence 3344444432 556666654443 34444555677777777778888888777665544 4455555555444433
Q ss_pred HcCCChhHHHHHHHHHHhCC
Q 006281 130 IQGKNTQKAFSVFNEVKFNC 149 (652)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~ 149 (652)
...|...--+.+|..+.+.|
T Consensus 406 ~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 406 AQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp CCTTSCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHhccC
Confidence 34455555555555555443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.41 E-value=1.9e+02 Score=25.17 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMK 427 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~ 427 (652)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555666666666666544
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.89 E-value=64 Score=26.15 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCccCHHhHHHHHHHHHcCCC
Q 006281 67 ALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN--KITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 67 a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 134 (652)
+++-+....+..|.+.+..= ..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-
T Consensus 16 ~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 16 LLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33334444444555555532 34455555555666666666666655 444455555555555555554
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.60 E-value=95 Score=24.49 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
+..|.+++..=. .++..+...+ .-.|.++++.+.+.+...+..|-...++.+...|-
T Consensus 11 ~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 455666665432 3445555555 56677777777766655566665555556555553
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.92 E-value=1.2e+02 Score=23.91 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 77 QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 77 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
..|.+.++.=. .++..+...+..-.|.++++.+.+.+...+..|-...++.+...|-
T Consensus 15 ~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 15 ETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34555554332 3444554455555666666666665544555555555555555543
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.75 E-value=2.7e+02 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
...++.-|...|+.++|.+.++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3455666666666666666666664
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.65 E-value=1.7e+02 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=11.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCC
Q 006281 303 ILGLIVERRICEAKELGEVIVSGK 326 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~ 326 (652)
+...+..|+.+.+..+++.+.+.+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC
Confidence 344444555555544444444443
No 310
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.31 E-value=2.8e+02 Score=25.62 Aligned_cols=127 Identities=11% Similarity=0.029 Sum_probs=65.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----hC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 353 FNFMIEKGRVPTLSTLSNLSKNLCKRNKSD-ELVEVYKVLS----AN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
++...+.+++++......++..+.....-+ .=..+.+.+. +. ...-|+.....+...|.+.+++.+|...|-
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i- 160 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV- 160 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Confidence 344445556666655555555554443211 1111222211 11 123366777778888888898888887773
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
.|..++...|..++.-+...+...+ ++...-..+ --|...++...|..+++...+
T Consensus 161 ---lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 161 ---LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 2334444666555554444433222 122222222 234456777888777666553
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.07 E-value=3.6e+02 Score=26.77 Aligned_cols=26 Identities=8% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 85 LSYHSILKSLSLSRQINAIDSVLKQV 110 (652)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 110 (652)
..+|.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 33455555555555555555555544
No 312
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.74 E-value=1.9e+02 Score=23.55 Aligned_cols=28 Identities=7% Similarity=-0.073 Sum_probs=17.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
-++.+...|...|+.++|+..|...-..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 3455555666777777777777654333
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.54 E-value=73 Score=26.61 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhCCCCccHHH----HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 521 LQAAFEVFNKSVNHDVMLARSI----LSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+.|+-+|+.+......+...+ -...+..|.+.|.+++|.+++++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 5677777775433322111111 12234456677777777777777544
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.26 E-value=1.6e+02 Score=22.56 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 432 (652)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.+. .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 445666677778888888877776421111 22233344444544432 35566777777666544
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.98 E-value=1.5e+02 Score=27.61 Aligned_cols=93 Identities=6% Similarity=-0.043 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH---HhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS---SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (652)
|..-++. |...+..|+.+.+..+++ .|..++. .-.+. +...+..|+.+-+.-+ .+.|..++...-.+
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTA-LHLACKFGCVDTAKYL----ASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCH-HHHHHHHCCHHHHHHH----HHHCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcH-HHHHHHcCCHHHHHHH----HHCCCCccccCCCC
Confidence 4444433 344556677766555554 3433322 12222 3333445555443333 33333333322223
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCC
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGV 185 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~ 185 (652)
.+...+..|+.+-+..+++.....|.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCC
Confidence 34445566777777766666444343
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.96 E-value=1.3e+02 Score=29.13 Aligned_cols=110 Identities=10% Similarity=-0.055 Sum_probs=52.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHH
Q 006281 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIA--YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLI 307 (652)
Q Consensus 232 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~ 307 (652)
.+...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+..++ +.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 444556778876555544 4455554321 123444555667766554444 344443322 1223455555
Q ss_pred ccCCHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhcCChhHHHHHH
Q 006281 308 VERRICEAKELGEVIVSGKFTID---DDVLNALIGSVSSIDPRSAIVFF 353 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~a~~~~ 353 (652)
..|+.+-+.-+++. |..++ ..-.+.+..+...|+.+....++
T Consensus 89 ~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 89 RIGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALL 133 (437)
T ss_dssp HHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HCCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 66776555444433 33222 22234444555556555444333
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.60 E-value=1.2e+02 Score=20.77 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 496 MLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 496 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334455444332 22333443332 33344455555444444444444444444444444
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.15 E-value=1.9e+02 Score=23.29 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcc--CHHhHHHHHH-H-----HHcCCChhHHHHHHHHHHh
Q 006281 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITL--DSSVYRFIIP-S-----LIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 147 (652)
|..-+..| ..|++-++-++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 4499999999999988775445 4566777777 3 2357999999999988754
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.06 E-value=2.1e+02 Score=23.47 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=31.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCcCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCh
Q 006281 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFI---AYRIVAEEFKL-MGSVFEREVVLKKKRKLGVAPRT 296 (652)
Q Consensus 232 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~ 296 (652)
.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3344455566555556666666666555432 12222222221 22344445566666666655544
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.11 E-value=2.3e+02 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh
Q 006281 230 VLIIHGFCKGKRVEEAFKVLDELR 253 (652)
Q Consensus 230 ~~l~~~~~~~g~~~~A~~~~~~m~ 253 (652)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 456667777777777777777764
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.99 E-value=1.7e+02 Score=23.05 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=17.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhc
Q 006281 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (652)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 202 (652)
+..+...+..-.|.++++.+.+.+...+..|.-..|+.+...
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 333333344444555555554444333333333333333333
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.69 E-value=2.5e+02 Score=23.57 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006281 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~ 364 (652)
.++++.+.+..|.+.|+-.+-+|++.| .|.
T Consensus 18 iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~ 47 (204)
T 2r9g_A 18 ISAFQKSIRGSDVDAALHYLARLVEAG-DLA 47 (204)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-CHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CHH
Confidence 445555555667777777777777777 443
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.57 E-value=1.6e+02 Score=23.28 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcC
Q 006281 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA 203 (652)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 203 (652)
.....+-+.+.+.|.+ ....-..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.32 E-value=95 Score=30.82 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=45.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-CccHH---HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV-MLARS---ILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...++.+++.|...+.++.|..+..+..-... .++.. .+..++..+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888889999999999999987642211 11222 2344567778889999999888887664
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.60 E-value=2.1e+02 Score=24.27 Aligned_cols=13 Identities=0% Similarity=-0.072 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHH
Q 006281 95 SLSRQINAIDSVL 107 (652)
Q Consensus 95 ~~~~~~~~a~~~~ 107 (652)
++.|+.+.+..++
T Consensus 17 ~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 17 TQYGIYERCRELV 29 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCChHHHHHHH
Confidence 3455554444333
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.16 E-value=80 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.140 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhCCCccCcccHHHHHHHH-Hhc
Q 006281 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKF-CEN 202 (652)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~ 202 (652)
++|...|-+|++..-.+...||...++.+ +..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777776655455667777777666 443
No 327
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.80 E-value=1.7e+02 Score=21.09 Aligned_cols=34 Identities=3% Similarity=0.134 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
-.+.++.+++...|+.|+..+...++..|...+-
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3466667777777887887777777777776653
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.77 E-value=2.7e+02 Score=23.32 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372 (652)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 372 (652)
.++++.+.+..|.+.|+-.+-+|++.|..|....-..++
T Consensus 11 ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 11 ISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555556667777777777777777655443333333
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.37 E-value=3.9e+02 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh
Q 006281 229 AVLIIHGFCKGKRVEEAFKVLDELRI 254 (652)
Q Consensus 229 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 254 (652)
...++.-|...|++++|.+.++++..
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 35677778888888888888888753
No 330
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.68 E-value=2.5e+02 Score=22.67 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHhhhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 524 AFEVFNKSVNHDVMLA-RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
...+|..|...++... ...|...+..+...|++.+|.+++..-.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555443322 33455555555566666666666655544
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.52 E-value=1.3e+02 Score=23.42 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 496 MLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 496 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-.
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455666655432 33445555544 5556777777776666666666555555666665543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.42 E-value=4.6e+02 Score=25.57 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 458 (652)
.+.+.|.++-.+ .|++--...|..-.+.+...|++++|-.+-....+ |+--+..|.+.+-..-...|+..--..+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 444444444322 23332333455555666777888888776655433 33336666665555444556666677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 459 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
..+.+.| +.+..---.+++.-..+|+.+-....+.+ ..+..+... .-++ +..+..-|..+|.++
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeL-GDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEEL-GDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHH-HHHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHh-Hhhh----hhcCHHHHHHHHHHc
Confidence 7777766 55554444455555555655444443332 234433332 2222 233555666666554
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.35 E-value=4.6e+02 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-----HHHHHHHHHHhhhCC
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN-----LQAAFEVFNKSVNHD 535 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~ 535 (652)
.++.+.|+.++.+|.+.|..|....-..+..+...-|. ...|...++.+...|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 35666666666666666665554444444444444332 233444444444444
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.28 E-value=1.6e+02 Score=22.85 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=16.9
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHhCCCccCcccHHHHHHHHHh
Q 006281 161 LAVLASDG-YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (652)
Q Consensus 161 l~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 201 (652)
+..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+..
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 33333333 344455555555544433333333333333333
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.12 E-value=1.6e+02 Score=20.10 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 517 (652)
-.+.++++.+.+.+...+..|....+..+..
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3444444444444333344444444444433
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.81 E-value=4.9e+02 Score=28.41 Aligned_cols=28 Identities=21% Similarity=0.056 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.|..++..+.+.+-++-+++..+.+.+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 3445666666666666666666666543
No 337
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.57 E-value=2.2e+02 Score=22.32 Aligned_cols=14 Identities=0% Similarity=0.178 Sum_probs=6.7
Q ss_pred HHhcCChhHHHHHH
Q 006281 94 LSLSRQINAIDSVL 107 (652)
Q Consensus 94 ~~~~~~~~~a~~~~ 107 (652)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 33455555444444
No 338
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.41 E-value=46 Score=21.45 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCC
Q 006281 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEI 643 (652)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 643 (652)
.++.+.+.-|+....+...++ -...|+.+.|...+-+|...+..++.
T Consensus 12 ~l~~L~emFP~ld~~~I~~vL--~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 12 DLKAIQDMFPNMDQEVIRSVL--EAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHCSSSCHHHHHHHH--TTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHH--HHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 333444446666555544332 24567777777777766655554443
No 339
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.16 E-value=87 Score=29.33 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=5.6
Q ss_pred hcCCHHHHHHHHH
Q 006281 482 EVGEIEGALRLFH 494 (652)
Q Consensus 482 ~~g~~~~A~~~~~ 494 (652)
..|+.+-+..+++
T Consensus 253 ~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 253 RAAMVLLTKELLQ 265 (364)
T ss_dssp HTCCHHHHHHHHH
T ss_pred HhChHHHHHHHHH
Confidence 3455444444443
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.71 E-value=1.1e+02 Score=23.48 Aligned_cols=46 Identities=7% Similarity=0.043 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
.++..+...+..-.|.++++.+.+.+...+..|-...++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555555666677777777666555566665555666665554
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.47 E-value=3e+02 Score=23.15 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=11.8
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 006281 91 LKSLSLSRQINAIDSVLKQ 109 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~ 109 (652)
+...+..|+.+.+..+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455566777766666654
No 342
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.47 E-value=2.9e+02 Score=22.60 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
....+++.+.+.|+-.|..--..++....+.|.+ ....+-.++.+.|+.++ .....+..+......+.|..++++-.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~Kk~ 127 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEKLA 127 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 4455556666666554444444445544433321 23445555666666422 22222211100111334444444322
Q ss_pred hC-CCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhC
Q 006281 533 NH-DVMLARSILSTFMISLCRRGH-FLVATKLLRGLSSD 569 (652)
Q Consensus 533 ~~-~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 569 (652)
.. ...++......++..+.+.|- ++.+..+++.+...
T Consensus 128 ~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 128 NRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred hhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCC
Confidence 21 112233344555666666664 55555666665443
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.44 E-value=3.9e+02 Score=29.19 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=61.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
++..|...|..+-+.++..- ++.+...--.+..+|...|++++|.++|++... |+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc----------c
Confidence 55666677777665543322 234444444566778888888888888887542 3322111100 0
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
......++.. .+.. ......|..++..+.+.+-++-+.++.+.+.+
T Consensus 880 ~~~~~~ll~~-~e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 880 LREFQEIAEK-YHHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp GHHHHHHHHH-TTTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhccCc-cccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0111122221 1111 12334677888888888888888888777665
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.99 E-value=1.5e+02 Score=23.37 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=18.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhc
Q 006281 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (652)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 202 (652)
+..+...+ .-.|.++++.+.+.+...+..|.-.-|+.+...
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 33333333 445555555555554444443333333344433
No 345
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.86 E-value=2.6e+02 Score=22.40 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL-VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
-..++..++..++..--..+ +...--.|+..|.+..++. +..+.+-.-. ......-..+-|++.-.|++++|+.+
T Consensus 20 l~~dYs~VI~~L~~~~~~~L--p~~~kY~LA~SYI~~e~Ls~eQKenIln~i--tlkSde~yL~YWIyiGRg~~~eAlDi 95 (161)
T 2ynq_A 20 LQNKYSDVITTLEDYAPEDM--PYVIQYELASSYVMTESLTEEQRQTVSNNI--TLKTDEQYMLYWIYIGRSQSEEALEL 95 (161)
T ss_dssp TTTCHHHHHHHHTTSCGGGS--CHHHHHHHHHHHHHTSSSCHHHHHHHHHTC--CTTSCHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhHHHHHHHHhcCChhhC--ChhHHHHHHHHHHHccCCCHHHHHHHHhhC--CccCCHHHHHHHHHHcCCchHHHHHH
Confidence 35688888887775433332 3334455777888776654 3333222111 12334455677888888999999998
Q ss_pred HHHHHhc
Q 006281 596 IKWIQES 602 (652)
Q Consensus 596 ~~~~~~~ 602 (652)
-+.+...
T Consensus 96 A~~L~D~ 102 (161)
T 2ynq_A 96 ARTIEDR 102 (161)
T ss_dssp HHHHTCH
T ss_pred HHhcCcH
Confidence 8777543
No 346
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.62 E-value=3.2e+02 Score=22.69 Aligned_cols=17 Identities=18% Similarity=-0.207 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHhcCC
Q 006281 434 DVSFYNSLMEACCREDL 450 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~ 450 (652)
+...-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444444
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.15 E-value=1.1e+02 Score=23.98 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
.++..+...+..-.|.++++.+.+.+...+..|-...++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4455555555566667777776666555555555555555555553
No 348
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.13 E-value=1.2e+02 Score=25.79 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=7.5
Q ss_pred HHHhcCCHHHHHHHHH
Q 006281 270 EFKLMGSVFEREVVLK 285 (652)
Q Consensus 270 ~~~~~g~~~~a~~~~~ 285 (652)
..+..|+.+....++.
T Consensus 12 ~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 12 NLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3344455555444443
No 349
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.81 E-value=3.6e+02 Score=22.99 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=10.0
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~ 463 (652)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555443
No 350
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.80 E-value=1.7e+02 Score=23.13 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhc
Q 006281 169 YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (652)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 202 (652)
..-.|.++++.+.+.+...+..|.-.-|+.+...
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555554443333333333333333333
No 351
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.79 E-value=2.6e+02 Score=24.90 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006281 86 SYHSILKSLSLSRQINAIDSVLK 108 (652)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~ 108 (652)
.....++..+..|+...+.++..
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHhhcCCCCCcccCCC
Confidence 34555666667777666665443
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.78 E-value=1.7e+02 Score=23.14 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 78 PNFTHSPLSYHSILKSLSLSR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 78 ~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
.|.++++.=. .++..+...+ ..-.|.++++.+.+.+...+..|-...+..+...|-
T Consensus 11 ~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 11 AGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp TTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred cCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445554332 3444554444 555666666666666545555555555555555554
No 353
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.66 E-value=1.9e+02 Score=25.07 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCccCcc-------cHHHHHHHHH--hcCcHHHHHHHHHHH
Q 006281 163 VLASDGYIDNALKMFDEMSHRGVEFSTI-------GFGVFIWKFC--ENAKLGQVLSMLDEV 215 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~--~~g~~~~a~~~~~~~ 215 (652)
..++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445566666666666555554443322 2233332221 456666555555544
No 354
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.49 E-value=1.4e+02 Score=24.93 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHH-----HHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTS-----LLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
.+.|+.+|+.+.+.-- +-...... .+..|.+.|.+++|.++|++..+..
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 5678888887764321 11112222 3345788888888888888865544
No 355
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.31 E-value=2e+02 Score=24.44 Aligned_cols=12 Identities=0% Similarity=0.100 Sum_probs=5.4
Q ss_pred HHHHhcCChhHH
Q 006281 92 KSLSLSRQINAI 103 (652)
Q Consensus 92 ~~~~~~~~~~~a 103 (652)
...+..|+.+.+
T Consensus 16 ~~A~~~g~~~~v 27 (237)
T 3b7b_A 16 HAAAEAGHVDIC 27 (237)
T ss_dssp HHHHHHTCHHHH
T ss_pred HHHHHcCcHHHH
Confidence 333445555433
No 356
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=22.28 E-value=2.8e+02 Score=26.45 Aligned_cols=152 Identities=7% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHcCCCH-HHHHHHHHHhhhCCCCc-----cHHHHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY-TSLLEGLCQETNL-QAAFEVFNKSVNHDVML-----ARSILST 545 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~-----~~~~~~~ 545 (652)
+..-+..|.+.+++.+|+-+-... +...| ......|.+...- ..-.+++..++..++.- +..-|..
T Consensus 159 ~e~AV~~cl~~~r~adAllLA~~g-------g~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~~l~~WkE 231 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIALDS-------NNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENLDVSQWKF 231 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHBCGGGHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHhc-------CHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcCChhhHHH
Q ss_pred HHHHHHhcCCHH--HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh----------------------
Q 006281 546 FMISLCRRGHFL--VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE---------------------- 601 (652)
Q Consensus 546 l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------------- 601 (652)
.+.+.+.....+ +-..+.+.+-..-........-.-+|.-.|++++...++.+-.+
T Consensus 232 ~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lq 311 (399)
T 2pm7_A 232 ISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECMT 311 (399)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCcccccHHHHH
Q ss_pred -------------------cCCCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 602 -------------------SSPTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 602 -------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
..+........ ++..++.+|..+.|.++++
T Consensus 312 e~iEkv~vl~~a~~~~~~~~~~~l~~~~~e-YA~lLA~qG~l~~A~~yL~ 360 (399)
T 2pm7_A 312 EFIERFTVFSNFINGSSTINNEQLIAKFLE-FINLTTSTGNFELATEFLN 360 (399)
T ss_dssp HHHHHHHHHHTTSCC---CCCHHHHHHHHH-HHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHH-HHHHHHhCCCHHHHHHHHH
No 357
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.95 E-value=1.5e+02 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=18.4
Q ss_pred HHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 496 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+.+.|+.|...++.-++..+.+.=.++.+..+|+.....|
T Consensus 235 L~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 235 LDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 3334444444444444444444444555555555444443
No 358
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.84 E-value=3.3e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=-0.033 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
+..+-...+.++...|..+ +...+.++.. .++...-...+.++.+.++.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 4444444444444444432 2222322322 23444444455555555543
No 359
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.52 E-value=3.7e+02 Score=22.75 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=16.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006281 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~ 364 (652)
++++.+.+..|.+.|+-.+-+|++.|..|.
T Consensus 40 SAf~KSiRGSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 40 SAFIKSIRGSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 334444444566666666666666555443
No 360
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.16 E-value=1.1e+02 Score=25.84 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=6.1
Q ss_pred HcCCChhHHHHHHH
Q 006281 130 IQGKNTQKAFSVFN 143 (652)
Q Consensus 130 ~~~g~~~~a~~~~~ 143 (652)
+..|+.+....+++
T Consensus 10 ~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 10 CMENEFFKVQELLH 23 (228)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHh
Confidence 34444444444443
No 361
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.83 E-value=1.7e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC--CCccCcccHHHHHHHHHhcC
Q 006281 158 NSLLAVLASDGYIDNALKMFDEMSHR--GVEFSTIGFGVFIWKFCENA 203 (652)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g 203 (652)
..++..+...+..-.|.++++.+.+. +...+..|.-.-|+.+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444555555555566666665554 33334333333344444443
No 362
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.17 E-value=2.1e+02 Score=19.37 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=21.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++..+...|++++|..++-++....|.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 56777777788888888777777776665
Done!