BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006282
(652 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/657 (67%), Positives = 524/657 (79%), Gaps = 38/657 (5%)
Query: 1 MAQIQVQHQAQMSGPNGVAA----------GASGNQFLTTSLYVGDLDFNVTDSQLYDLF 50
MAQ+Q+Q Q PNG A GA+ QF TSLYVGDLDFNVTDSQL+D F
Sbjct: 1 MAQVQLQGQT----PNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAF 56
Query: 51 SQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP 110
Q+G V++VRVCRDL TRRSLGYGYVN+ NP DAARA+ LN+ PL K IR+MYSHRDP
Sbjct: 57 GQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116
Query: 111 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170
S+R+SG GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+GFVQ+ N+ES
Sbjct: 117 SVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEES 176
Query: 171 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
AQ AI+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FG
Sbjct: 177 AQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG 236
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
EYG ITSAVVM+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSER
Sbjct: 237 EYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296
Query: 291 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
E EL+ ++EQ +KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G
Sbjct: 297 ETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGT 356
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 410
SKGSGFVAF+TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM
Sbjct: 357 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQ 416
Query: 411 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP 470
PSV PRMP+YPPG G+GQQ YGQAPPA+IPPQ G+GYQQQLVPGMRP G P+P+FF+P
Sbjct: 417 PSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMP 476
Query: 471 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 530
+V QQ G R G +Q +QQ P+M QM PRG +RYP GR G
Sbjct: 477 MVQPQQQRPG--GGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGR---------GGSG 525
Query: 531 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 590
+P P DMG + P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++A
Sbjct: 526 DVP-PYDMGNNM---------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESA 575
Query: 591 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 647
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+
Sbjct: 576 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 339/617 (54%), Positives = 424/617 (68%), Gaps = 40/617 (6%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
+SLY GDLD VT++ L+DLF V V+SVRVCRD RRSLGY Y+N++NP DA RA++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG ILSCK+
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTK 207
A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER + +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE + AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL DS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
LKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KPLY+A+A
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 388 QRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQQFLYGQ 435
QRKE+RRA LQA FSQ+R PGP SG Q GQ
Sbjct: 408 QRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQHMYVGQ 452
Query: 436 APPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQQ 492
+++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRGA VQQ
Sbjct: 453 NGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQ 511
Query: 493 TQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 550
Q +M H+ P G Y GRN D G + + I + A +
Sbjct: 512 HIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPL- 569
Query: 551 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 610
+PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+E
Sbjct: 570 --LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLME 627
Query: 611 SPEALKAKVAEAMEVLR 627
SPEALK+KV+EA++VLR
Sbjct: 628 SPEALKSKVSEALDVLR 644
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 347/639 (54%), Positives = 446/639 (69%), Gaps = 33/639 (5%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+SLYVGDLD +V +S L DLF+QV V ++RVCRDL T RSLGY YVN+ANP DA+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIK 205
+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E+ A+
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+ F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + + AA A
Sbjct: 237 S-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 295
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
VE +NG + YVG+AQKKS+RE+EL+ +FEQ +K QG NLY+KNL DS++D
Sbjct: 296 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
EKLKE+FSE+G +TSCKVM + G+S+G GFVA+S PEEA A+ EMNGKMI KPLYVA
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 386 VAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLYGQAPPA 439
+AQRKEER+A LQ+ F+Q+R P M P VP M +PPG SG G
Sbjct: 416 LAQRKEERQAHLQSLFTQIRSPGTMSP-VPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 440 IIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQP 496
++P Q G+GYQ Q +PGMRP P PNF + P+ Q Q G R G RRGA +QQ Q
Sbjct: 475 LVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQ- 532
Query: 497 LPIMPHQMPPRGHAYRYPLG----RNMQDFPFDMGAGSMLPVPVDMGA---GIPRRDASV 549
Q + +A R+ G RN + G ++P+P++ A P+R +
Sbjct: 533 -----QQQMLQQNASRFMGGAGNRRNGMEASAPQG---IIPLPLNASANSHNAPQR-SHK 583
Query: 550 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 609
P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LHLL
Sbjct: 584 PTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLL 643
Query: 610 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 648
ESPEALKAKV+EA++VLR A A + D +LS +E
Sbjct: 644 ESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 682
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/637 (46%), Positives = 406/637 (63%), Gaps = 43/637 (6%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 440 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 544
R A QT P P A P R + + + G + P P+
Sbjct: 481 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 529
Query: 545 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 597
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 530 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGML 585
Query: 598 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/637 (46%), Positives = 405/637 (63%), Gaps = 43/637 (6%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 440 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 544
R A QT P P A P R + + + G + P P+
Sbjct: 481 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 529
Query: 545 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 597
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 530 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 585
Query: 598 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/637 (46%), Positives = 405/637 (63%), Gaps = 43/637 (6%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 440 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 544
R A QT P P A P R + + + G + P P+
Sbjct: 481 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 529
Query: 545 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 597
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 530 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 585
Query: 598 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/637 (46%), Positives = 404/637 (63%), Gaps = 43/637 (6%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL + T++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 440 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 544
R A QT P P A P R + + + G + P P+
Sbjct: 481 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 529
Query: 545 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 597
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 530 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 585
Query: 598 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/634 (46%), Positives = 404/634 (63%), Gaps = 37/634 (5%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 440 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP---VPVDMGA 540
R A QT M PR A ++ P + AG P +
Sbjct: 481 RVANTSTQT----------MGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQV 530
Query: 541 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 600
+ + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+
Sbjct: 531 TMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEI 588
Query: 601 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634
D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 589 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 304/653 (46%), Positives = 406/653 (62%), Gaps = 58/653 (8%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN E DE LK+ FG+YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ F+ FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP-- 438
PLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPAQ 415
Query: 439 ---AIIPPQAGFGYQQQLVP-------GMRP------AG-----APMPNFFVPVVSQGQQ 477
A PP G QL P G RP AG AP P F + Q
Sbjct: 416 NRAAYYPP----GQIAQLRPSPRWTAQGARPHPFQNMAGAIRPSAPRPPTFSTMRPTSQV 471
Query: 478 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG----HAYRYPLG-RNMQDFPFDMGAGSML 532
+ +R A QT P P Y+Y G RN Q +M
Sbjct: 472 PRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAMQ 531
Query: 533 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 592
V + GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K
Sbjct: 532 QPAVHVQ----------GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGK 578
Query: 593 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 645
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A ++ S +
Sbjct: 579 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA---HQAKEAAQKVVSAT 628
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN G+ +DDE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G S+G GFV+F E+A +A+ +MNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 305/710 (42%), Positives = 408/710 (57%), Gaps = 114/710 (16%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
V A A+ +Q + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVN
Sbjct: 30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 89
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
Y + A RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDT
Sbjct: 90 YNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 149
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197
F++FGNILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K+
Sbjct: 150 FAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 209
Query: 198 ERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
+R++ +K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVN
Sbjct: 210 DRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 315
F + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY
Sbjct: 270 FSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLY 329
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------------------------- 346
+KNL D +DD+KL+ELF +GTITS KVMRD
Sbjct: 330 VKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEK 389
Query: 347 ----------------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYV
Sbjct: 390 EPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 449
Query: 385 AVAQRKEERRARLQAQFSQMRPVA--------------MGPSVPPRMPMYPPGPSGLGQQ 430
A+AQRK+ RR++L+A + M P+V Y PG G
Sbjct: 450 ALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV-----FYGPGQQG---- 500
Query: 431 FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 490
F+ G + PPQ G PG P P P GQQG RG GP
Sbjct: 501 FIPGAQRGGMFPPQPGMMMGMPGRPGQYP--GPFP---------GQQGG-----RGVGPN 544
Query: 491 QQTQ---QPLPIMPHQMPPRGHAYRYPL---------------GRNMQDFPFDMGAGSML 532
QQ Q LP+ Q P + YP+ G G +
Sbjct: 545 QQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGV 604
Query: 533 PVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERD 588
P+ M G R +VGQP P T + + AL+ A P+QQ+ +LGE+LYP ++ + +
Sbjct: 605 PLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPE 664
Query: 589 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 638
A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 665 LAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 21/318 (6%)
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 152 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 210
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 271 GKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
G +D++ +VG K +R+ +E+K F N+YIKN+ ++DE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVEDEE 238
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 388 QRKEERRARLQAQFSQMR 405
Q+K ER L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 291/661 (44%), Positives = 408/661 (61%), Gaps = 71/661 (10%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+G + SLYVGDL +VT++ LY+ FS G ++S+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 419
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLPAMPQPPNRTF 419
Query: 420 YPPGPSG---LGQQFLYGQA------PPA----IIPPQAGFGYQQQLVPGMRPAGAPMPN 466
Y P P Q+ Q+ PPA +PP+ + M+ A +P
Sbjct: 420 YSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRR----MSSNISTMKQASTQVPR 475
Query: 467 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFD 525
V Q+ G + Q + MPH Y+Y RN+Q +
Sbjct: 476 ----VAPHSQRVANIGTQTAGARAQVNPSIMRTMPH--------YKYSCAVRNVQPIGTN 523
Query: 526 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 585
++ V M GQ P+TA ++LA+A P++Q+ +LGE LYPL+ ++
Sbjct: 524 THLQQVMEPAVLMQ----------GQE-PLTA--SSLASAPPQEQKQMLGERLYPLIHEM 570
Query: 586 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 645
A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A S
Sbjct: 571 HPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQS 627
Query: 646 L 646
L
Sbjct: 628 L 628
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/652 (44%), Positives = 400/652 (61%), Gaps = 53/652 (8%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+G + SLY+GDL +VT++ LY+ FS G ++S+RVCRD++TRRSL Y Y+N+ P
Sbjct: 3 ATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 419
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLSAMPQPPNRTF 419
Query: 420 YPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 475
Y P P Q + PP PP Q + + VP V+Q
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQVPRVAQH 479
Query: 476 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPV 534
Q G + AG Q P M MP Y+Y G RN+Q ++
Sbjct: 480 SQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYSCGVRNVQPIVSSTHLQQVMEP 532
Query: 535 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 594
V M GQ P+TA + LA A P++Q+ +LGE +YP++ ++ A K+T
Sbjct: 533 AVLMQ----------GQE-PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKIT 579
Query: 595 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 646
GMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/691 (44%), Positives = 402/691 (58%), Gaps = 105/691 (15%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ L++LFS +GQV S+RVCRD TRRSLGY YVNY N AD RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++ +K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKA 265
F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
VEALN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 326 EKLKELFSEFGTITSCKVMRD--------------------------------------- 346
EKL+ELFS +GTITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 347 --------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 393 RRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-AGFG 448
RR++L+A + +R + P P YG IP Q G
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPA-------VFYGPGQQNFIPNQRGGMP 526
Query: 449 YQQ--QLVPGMRPAGAPM---------------PNFFVPVVSQGQQGQ-RPGGRRGAGPV 490
+QQ ++PGM P G PN +P + G Q P G +GAG
Sbjct: 527 FQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGAGIP 585
Query: 491 QQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQDFPFDMGAGSML--PVPVDMGAGIPRRDA 547
P M P G + P G+ M MG G +PV G G P + A
Sbjct: 586 NGLN--YPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQ-A 642
Query: 548 SVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAAKVT 594
GQ P A+ NASP QQ+ +LGE++YP ++ + + A K+T
Sbjct: 643 GRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKIT 702
Query: 595 GMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
GMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 703 GMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/625 (45%), Positives = 387/625 (61%), Gaps = 53/625 (8%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
++ SLYVG+LD +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNY N AD RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
L+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIK 205
K+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER + ++
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A KA
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
V+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLY+KNL D DD
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 386 VAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 443
+AQRK+ RR L++Q +Q M G PG G Q +YG PP
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGF--------PGMQGYMGQPMYG------YPP 449
Query: 444 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--IMP 501
G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 450 MPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGVPA 497
Query: 502 HQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 554
+ MPP+ G+ R P G + P G + P PV G+P G MP
Sbjct: 498 YGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMP 556
Query: 555 ITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 601
A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD
Sbjct: 557 ARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMD 616
Query: 602 QTEVLHLLESPEALKAKVAEAMEVL 626
E+LHL+ES AL+ KV EA+ VL
Sbjct: 617 NAELLHLVESQPALQEKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/625 (45%), Positives = 387/625 (61%), Gaps = 53/625 (8%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
++ SLYVG+LD +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNY N AD RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
L+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIK 205
K+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER + ++
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A KA
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
V+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLY+KNL D DD
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 386 VAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 443
+AQRK+ RR L++Q +Q M G PG G Q +YG PP
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGF--------PGMQGYMGQPMYG------YPP 449
Query: 444 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--IMP 501
G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 450 MPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGVPA 497
Query: 502 HQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 554
+ MPP+ G+ R P G + P G + P PV G+P G MP
Sbjct: 498 YGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMP 556
Query: 555 ITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 601
A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD
Sbjct: 557 ARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMD 616
Query: 602 QTEVLHLLESPEALKAKVAEAMEVL 626
E+LHL+ES AL+ KV EA+ VL
Sbjct: 617 NAELLHLVESQPALQEKVDEALRVL 641
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 287/618 (46%), Positives = 389/618 (62%), Gaps = 29/618 (4%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG+ + SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 432
KPLYVA+AQRKEER+A L Q+ Q MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 433 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 490
YG P + P Q + Q RP+ A M V R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 491 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 550
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 551 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 610
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 611 SPEALKAKVAEAMEVLRS 628
SPE+L AK+ EA+ VL++
Sbjct: 585 SPESLHAKIDEAVAVLQA 602
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 289/654 (44%), Positives = 401/654 (61%), Gaps = 57/654 (8%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ ++ SLY+GDL +VT++ LY+ FS G ++S+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
G+ILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ LK+IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 432
KPLYVA+AQRKEER+A L Q+ Q MR + +G P P P + F
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAF- 419
Query: 433 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-------------------VVS 473
Y P A + P + Q P +P AP+ P V
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPP-APLMRAVPPRRMHSNISTMKQASTQVPRVPL 478
Query: 474 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSML 532
Q Q+ G + Q + MPH Y+Y G RN+Q +L
Sbjct: 479 QSQRVANIGTQTAGARAQVNASIMRAMPH--------YKYSCGVRNVQPIGSSAHLQQVL 530
Query: 533 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 592
V M GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K
Sbjct: 531 EPAVLMQ----------GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGK 577
Query: 593 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 646
+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 578 ITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/703 (42%), Positives = 409/703 (58%), Gaps = 125/703 (17%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S +Q + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY N A
Sbjct: 41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 100
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
D RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FG
Sbjct: 101 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 160
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+K F NV++KNLD+ ++E+ +++F ++G ITSA + RD +GKS+ FGFVN+ D
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 340
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPS-------------------------------- 348
D IDDEKL+E+F+ +GTITS KVMRD +
Sbjct: 341 DDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAA 400
Query: 349 -------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
G SKG GFV FS+P+EAS+A+ EMN +MI KPLYVA+AQR
Sbjct: 401 KESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Query: 390 KEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII--PPQAGF 447
K+ RR++L+A + + +G+ Q ++ PA+ P Q GF
Sbjct: 461 KDVRRSQLEASIQARNTIRQQQAA---------AAAGMPQPYMQ----PAVFYGPGQQGF 507
Query: 448 GYQQQLVPGMRPAG---APMPNFFVPVVSQGQQGQRPG------GRRGAGPVQQT----Q 494
+PG + G AP P + V G+ GQ PG G RG GP QQ
Sbjct: 508 ------IPGGQRGGLPFAPQPGMMMGVPG-GRPGQYPGPFPGQQGGRGMGPNQQIPPNFA 560
Query: 495 QPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI--------- 542
Q +P+ M P G + YP M F GAG VP + MG G+
Sbjct: 561 QGIPM--GAMGPGGIPNGMGYP---QMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGR 615
Query: 543 -------------------PRRDASVGQPMPITALST-ALANASPEQQRTLLGESLYPLV 582
+ A G+ P L+ +LA A QQ+ +LGE+LYP +
Sbjct: 616 GGVPVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKI 675
Query: 583 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
+ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 676 QAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 301/692 (43%), Positives = 402/692 (58%), Gaps = 108/692 (15%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
NQ + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY N AD
Sbjct: 46 NQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 105
Query: 85 ARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNI
Sbjct: 106 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-- 202
LSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD 225
Query: 203 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 262
+K F N+++KN+D T+E+ +KIF ++G ITSA + RD +GKS+ FGFVN+ + A
Sbjct: 226 EMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESA 285
Query: 263 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 322
AV+ ++ K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D
Sbjct: 286 QAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDD 345
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPS---------------------------------- 348
+DDEKL+ELF +GTITS KVMRD +
Sbjct: 346 VDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKP 405
Query: 349 -------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 406 KESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 465
Query: 390 KEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPP 443
K+ RR++L+A + + P+ M P G GQQ GQ P
Sbjct: 466 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAP 525
Query: 444 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIM 500
Q G +PG RP P P P GQQG RG GP QQ Q +P+
Sbjct: 526 QPGM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQMPPNFQGIPMG 570
Query: 501 PHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP-------------- 543
Q P P G Y +G+ F G G + +P+ G P
Sbjct: 571 AMQGPGGIPNGMGYPQAMGQ--VQFGRGGGRGQVPGMPMGQGMRGPGYQGRGGPQGGPRP 628
Query: 544 ---RRDASVGQP------MPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKV 593
R + QP P AL+ AL A+P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 629 QGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKI 688
Query: 594 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 689 TGMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/620 (45%), Positives = 384/620 (61%), Gaps = 47/620 (7%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A SG + SLYVG+LD +VT++ L++LF+ +G V S+RVCRD TRRSLGY YVN+
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129
Query: 80 NPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 139
N D +ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS
Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
Query: 140 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+FG ILSCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER
Sbjct: 190 AFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRER 249
Query: 200 ETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 257
++ A+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+
Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYA 309
Query: 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317
N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++EQ E ++K+QG+NL+IK
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIK 369
Query: 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
NL D +DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+
Sbjct: 370 NLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRML 429
Query: 378 VSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 434
KPLYVA+AQRKE RR++L+AQ +Q R L QQ
Sbjct: 430 AGKPLYVALAQRKEVRRSQLEAQIQARNQFR---------------------LQQQVAAA 468
Query: 435 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 494
PA+ +G L+ G P G P +P G+ G G P+
Sbjct: 469 AGIPAV-----QYGATGPLIYG--PGGYP-----IPAAVNGRGMPMVPGHNGPMPM---- 512
Query: 495 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP-M 553
P MP Q P G A YP G N + G M+P V AG +A P M
Sbjct: 513 --YPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVPGM 568
Query: 554 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 613
P + LA E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE
Sbjct: 569 PERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDS 628
Query: 614 ALKAKVAEAMEVLRSVAQQQ 633
AL +V EA+ VL+ Q+
Sbjct: 629 ALNERVNEAIGVLQEFVDQE 648
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 310/697 (44%), Positives = 402/697 (57%), Gaps = 110/697 (15%)
Query: 19 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNY 78
+A S NQ + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY
Sbjct: 41 SATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 79 ANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 138
N AD RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 139 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198
++FGNILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++
Sbjct: 161 AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKD 220
Query: 199 RETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 256
R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 221 RQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNF 280
Query: 257 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 316
D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+
Sbjct: 281 STHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYV 340
Query: 317 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------------------------- 348
KNL D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 341 KNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEE 400
Query: 349 -----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 401 KPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 460
Query: 392 ERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQA 445
RR++L+A + + P+ M P G GQQ GQ PQ
Sbjct: 461 VRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQP 520
Query: 446 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPH 502
G +PG RP P P P GQQG RG GP QQ Q +P+
Sbjct: 521 GM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAM 565
Query: 503 QMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG-------- 550
Q P P G Y M F GAG VP + MG G+ G
Sbjct: 566 QGPGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGAPVQG 620
Query: 551 --------------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERD 588
+ +P T TA L P QQ+ +LGE+LYP ++ + +
Sbjct: 621 GPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPE 680
Query: 589 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 681 LAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 308/695 (44%), Positives = 400/695 (57%), Gaps = 112/695 (16%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S +Q + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY N A
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
D RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPS-------------------------------- 348
D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKP 404
Query: 349 ---------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R
Sbjct: 405 KESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
Query: 394 RARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQAGF 447
R++L+A + + P+ M P G GQQ GQ PQ G
Sbjct: 465 RSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM 524
Query: 448 GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQM 504
+PG RP P P P GQQG RG GP QQ Q +P+ Q
Sbjct: 525 ---VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAMQG 569
Query: 505 P---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG---------- 550
P P G Y M F GAG VP + MG GI G
Sbjct: 570 PGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGIRGPGYGQGRGGAPVQGGP 624
Query: 551 ------------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAA 590
+ +P T TA L+ P QQ+ +LGE+LYP ++ + + A
Sbjct: 625 RPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELA 684
Query: 591 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
K+TGMLLEMD E+L LLE EAL+AKV EA+ V
Sbjct: 685 GKITGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
PS + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 229 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 289 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 345
+R+ +E+K F N+YIKN+ + DE+ +++F +FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
D G S+G GFV FST + A A+ EMN K I + LYV AQ+K ER L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/687 (41%), Positives = 397/687 (57%), Gaps = 107/687 (15%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ L++LFSQ+G V S+RVCRD TRRSLGY YVNY AD +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + + RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++ +K
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV+VKN++ TDE+ +++F ++G +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNLGD +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 327 KLKELFSEFGTITSCKVMRDP--------------------------------------- 347
KL+ +FSE+G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 348 --SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARN 478
Query: 406 PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 465
+ M + +G+ QQ++ QAP Q GF PG R G P P
Sbjct: 479 QLRMQQAA---------AQAGMPQQYM--QAPVYYAGQQPGF----MPAPGGR--GVPFP 521
Query: 466 -NFFVPVVSQGQQGQRP---GGRRGAGPVQQTQQPLPIM---PHQMPPRGHAYRYPLGRN 518
VP V G+ GQ P GGR G P Q PI P PP Y +G+
Sbjct: 522 QGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQV 581
Query: 519 MQD------------------FPFDMGAGSMLP------VPVDMGA-GIPRRDASV---- 549
P + G +P P + G G PR +A+
Sbjct: 582 GALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFMAAG 641
Query: 550 -------GQPMPITA---LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 598
G P ++A L LA P+ Q+ ++GE+L+P ++ ++ A K+TGMLL
Sbjct: 642 RGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLL 701
Query: 599 EMDQTEVLHLLESPEALKAKVAEAMEV 625
EMD E+++L E AL KV EA+ V
Sbjct: 702 EMDNAELINLFEDDNALNVKVQEALAV 728
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/633 (44%), Positives = 390/633 (61%), Gaps = 40/633 (6%)
Query: 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
+ T SLYVGDL +VT++ LY+ FS G +LS+R+CRDL T S Y YVN+ + DA
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AI 204
C + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA K
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
AV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
DE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 385 AVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPPAII 441
A+AQRKEER+A L ++ Q M V P+ PP P Y + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARL 425
Query: 442 PPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 494
P + Q Q +RP GAP F + Q + +R A QT
Sbjct: 426 RPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTV 484
Query: 495 QPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRR 545
P P + PR Y+Y G RN Q +M + V +
Sbjct: 485 GPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQ------ 535
Query: 546 DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 605
GQ T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+
Sbjct: 536 ----GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 588
Query: 606 LHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 638
L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 589 LYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 166
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQ 60
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 227 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
++ +LYV +LD + D +L FS G + S +V + RS G+G+V +++P +A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 85 ARALDVLNFTPLNNKSIRIMYSHR 108
+A+ +N + K + + + R
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQR 370
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 290/615 (47%), Positives = 400/615 (65%), Gaps = 40/615 (6%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
TSLYVG+LD +VT++ L+++FS +G V S+RVCRD TRRSLGY YVN+ N AD RA+
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAM 105
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNILSCK
Sbjct: 106 EQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK 165
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK- 207
+AT+ +G S G+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER+ +T+
Sbjct: 166 VATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRA 224
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV+ KN+D TD++ +K+F ++G ITS V+ RD DGKSK FGFVNFE+ ++A KAV
Sbjct: 225 NFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAV 284
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S DDE
Sbjct: 285 DELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDE 344
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
+L+E F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLYVA+
Sbjct: 345 RLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 404
Query: 387 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAG 446
AQRK+ RR +L+AQ Q + + + YP G Y Q P P Q G
Sbjct: 405 AQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP------GPGMYYPQ--PGAFPGQPG 456
Query: 447 FGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 506
+VP R A A M +P+ GQ GQ P AG + Q +P PP
Sbjct: 457 -----GMVPRPRYAPAGMMPQGMPMAPYGQPGQFP-----AGMMPQGYRPA------RPP 500
Query: 507 RGHAYRYPLGRNMQDFPFDMGAGSM-----LPVPVDMGAGIPRRDAS--VGQP---MPIT 556
RG G PVP G +PR A+ G+P P
Sbjct: 501 RGAPNAAGGPAPPAGARPPTGVNGAPRPAGQPVP---GQPMPRGPAARPAGRPEADQPGA 557
Query: 557 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 616
+ ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL
Sbjct: 558 LTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALD 617
Query: 617 AKVAEAMEVLRSVAQ 631
AKV EA+EVL+ Q
Sbjct: 618 AKVNEALEVLKEYQQ 632
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 291 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 349
EQ G EQ + D +LY+ L S+ + L E+FS GT+ S +V RD +
Sbjct: 28 EQPAVGNGEQ--RNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTR 85
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 125
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/608 (45%), Positives = 363/608 (59%), Gaps = 58/608 (9%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
+++SLYVGDL V++ L+++F+QVG V ++RVCRD +TRRSL Y YVNY N ADA RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
LD LN TP+ K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS+FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
K+ TD SKGFGFV +E +ESA AI K+NGM+IN ++VFVG F +ER + K
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ-PTEVK 186
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
F NVF KNL E + LK++ +YG IT+ +M D GKSK FGF NFE+A+ A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIKN+ DSID++K
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDNDK 299
Query: 328 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
L+E+FS+FGTITS VM+D + SKG GFV ++ P+EA+RA+ EMNG+MI +KPLYVA+
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 387 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAG 446
AQRK+ RRA+L+ Q Q + +PP Y GP PA + PQ
Sbjct: 360 AQRKDIRRAQLEMQHQQKFKTGIRQQMPP---TYGSGPVFF---------TPAPVNPQVV 407
Query: 447 FGYQQQLVPGMR-----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 501
+ QQ++P R P G P + ++GQ R GP Q QP
Sbjct: 408 Y---QQMMPRPRNWNGQPVGVPQGQYANMNYARGQP-------RQNGPRQNGGQP----- 452
Query: 502 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 561
Q PR D+ +PV + + + L +
Sbjct: 453 RQNGPRP----------------DVSGAQPIPVQQQTTLDVAQTQQAASSAESALNLQSI 496
Query: 562 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEALKAKVA 620
+ S +QQ LGE LYPL+ + D A K+TGMLL+ + E+ L + + L K+
Sbjct: 497 INLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIR 556
Query: 621 EAMEVLRS 628
EA+EVL S
Sbjct: 557 EALEVLGS 564
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/638 (42%), Positives = 381/638 (59%), Gaps = 59/638 (9%)
Query: 17 GVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYV 76
G ++G + N + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD +++SLGY YV
Sbjct: 57 GESSGIAEN---SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 77 NYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHD 136
NY D +A++ LN+TP+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHD
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHD 173
Query: 137 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
TFS+FG ILS K+ATD GQSK FGFV +E +E+AQ AI+ +NGML+ND++V+VG + K
Sbjct: 174 TFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSK 233
Query: 197 QERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
++RE+ +K + N++VKN+D + T+++ +++F +G ITS + +D +GKSK FGFV
Sbjct: 234 KDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFV 293
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
NFE + AAKAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL
Sbjct: 294 NFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNL 353
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
++KNL + ID EKL+E F FGTITS KVM D +G SKG GFV FSTPEEA++A+ EMN
Sbjct: 354 FVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-- 432
+M+ KPLYVA+AQRK+ RR++L+ Q + M + GL QF+
Sbjct: 414 RMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAGGLPGQFMPP 464
Query: 433 --YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
YGQ PP G PG MR G P P +Q RPG
Sbjct: 465 MFYGQQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP----------EQWPRPG-- 507
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 544
QP+P+ + MPP+ + G+NM+ P
Sbjct: 508 -------PNGQPVPV--YGMPPQFQDFN---GQNMRPQQQQQQQQQQQQQQQQQRGYYPN 555
Query: 545 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEM 600
R A G +P L+ +ANA E Q+ +LGE LY + + E +AA K+TGM+L +
Sbjct: 556 RPA--GGNVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGL 613
Query: 601 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 638
+ E+L LL+ E EA+ + N A
Sbjct: 614 ENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAA 651
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/419 (54%), Positives = 303/419 (72%), Gaps = 10/419 (2%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 439
PLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PPA
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + ++ N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/605 (44%), Positives = 374/605 (61%), Gaps = 58/605 (9%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD +++SLGY YVNY D +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN++P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+ IK
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F N++VKN+D ++EDLKK+F YG ITS + +D +GKSK FGFVN+E + A KAV
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
E LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKNL D+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
KL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +M KPLYVA+
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 387 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAG 446
AQRK+ RR++L+ Q + M + G P IPP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAAT------------------GGIPGQFIPPM-- 450
Query: 447 FGYQQQLVP----GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 502
F QQ P G P P P ++ +GQ P GP QP+P+ +
Sbjct: 451 FYGQQGFFPPNGRGNAPFPGPNPQM---IMRRGQPFGGPEQWPRPGP---NGQPVPV--Y 502
Query: 503 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 562
+PP+ AY G+N++ P R+ + G+ L+ +
Sbjct: 503 GIPPQ--AYSDFNGQNIRQ----------------QRGYYPNRNQNKGRQQ--RDLAAII 542
Query: 563 ANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 618
A+A P+QQ+ +LGE LYP + + E +AA K+TGM+L++D E+L LLE E
Sbjct: 543 ASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTNH 602
Query: 619 VAEAM 623
+A+
Sbjct: 603 FEDAL 607
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 265/606 (43%), Positives = 372/606 (61%), Gaps = 61/606 (10%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
LYVG+L+ +V ++ L+++FS +GQV S+RVCRD T++SLGY YVN+ AD +RA++ L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
N++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+FG ILSCK+AT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 152 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFN 209
D GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+ +K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NV+VKNL + ++IF +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K+ D ++ YVG+AQKK ER ELK +E E + K+QG+NL++KNL DSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI KPLYVA+AQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 390 KEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQAPPAIIPPQA 445
K+ RR++L+ Q + M + +G+ QF+ YGQ P PP
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAA---------AAAGMPGQFMSPMFYGQQ-PGFFPPNG 469
Query: 446 GFGYQQQLVPG---MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 502
G Q P M P G MP QGQ P AGP QP+P+ +
Sbjct: 470 RGGAQGPFPPNPQMMMPRGGQMP---------PPQGQWP----RAGP---NGQPVPV--Y 511
Query: 503 QMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 561
MPP G + P G+ Q GA P R+ G+P L+
Sbjct: 512 GMPPVYGGEFNGPNGQRQQ-----------------RGAYPPNRNQKGGRPQ--RDLAAI 552
Query: 562 LANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 617
++ +QQ+ +LGE LYP + + E +AA K+TGM+L+++ E+L LLE E +
Sbjct: 553 ISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFEN 612
Query: 618 KVAEAM 623
+A+
Sbjct: 613 HFEDAL 618
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/632 (42%), Positives = 380/632 (60%), Gaps = 76/632 (12%)
Query: 13 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG 72
SG AA ++ + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD T++SLG
Sbjct: 34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLG 93
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
Y YVN+ D +A++ LN++ + + RIM+S RDPS+R++G GNIFIKNL +ID+K
Sbjct: 94 YAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNK 153
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 192
ALHDTF++FG ILSCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++V+VG
Sbjct: 154 ALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGK 213
Query: 193 FLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
+ K++RE+ +K F NV+ KN+D ++E+ KK+F YG ITS + +D +GKSK
Sbjct: 214 HISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKG 273
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310
FGFVNFEN + A KAV+ LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+Q
Sbjct: 274 FGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQ 333
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G+NL+IKNL D+ID EKL+E F FG+ITS +VM D +G SKG GFV FS+PEEA++A+
Sbjct: 334 GVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAIT 393
Query: 371 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPS 425
EMN +MI KPLYVA+AQRK+ RR++L+ Q +M+ A +P + PP
Sbjct: 394 EMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQ--FIPP--- 448
Query: 426 GLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRP 481
YGQ P PP G P P P +P +GQ QGQ P
Sbjct: 449 -----MFYGQQ-PGFFPPNG---------RGNGPFPGPNPQMMMP---RGQIPPPQGQWP 490
Query: 482 GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG------SMLPVP 535
GP QP+P+ + MPP + F+ GA P
Sbjct: 491 ----RPGP---NGQPVPV--YGMPP------------VYGGDFNNGANGGRQQRGYYPNR 529
Query: 536 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAA 591
G ++D L+ +ANA +QQ+ +LGE LYP + + E +AA
Sbjct: 530 NQNQKGRQQKD-----------LAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAG 578
Query: 592 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 623
K+TGM+L++D E+L LLE E +A+
Sbjct: 579 KITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 289 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 347
E EQ G+ E+A +LY+ L S+++ L E+FS G + S +V RD
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAV 87
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
+ S G +V F E+ +A+ ++N +I +P + +QR
Sbjct: 88 TKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR 129
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 272/646 (42%), Positives = 386/646 (59%), Gaps = 78/646 (12%)
Query: 17 GVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYV 76
G ++G + N + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD +++SLGY YV
Sbjct: 42 GESSGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 77 NYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHD 136
NY D +A++ LN+ P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHD
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHD 158
Query: 137 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
TFS+FG ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K
Sbjct: 159 TFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISK 218
Query: 197 QERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
++RE+ +K F N++VKN+D + ++E +K+F +G ITS + +D DGKSK FGFV
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
NFE+ + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNL 338
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-- 432
+MI KPLYVA+AQRK+ RR++L+ Q Q R +M M GL QF+
Sbjct: 399 RMINGKPLYVALAQRKDVRRSQLEQQI-QAR---------NQMRMQNAAAGGLPGQFIPP 448
Query: 433 --YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGR 484
YGQ PP G PG MR G P P +Q RPG
Sbjct: 449 MFYGQQ--GFFPPN---GRGNAPYPGPNPQMMMRGRGQPFP----------EQWPRPG-- 491
Query: 485 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM----GA 540
QP+P+ + +PP+ F D +M P G
Sbjct: 492 -------PNGQPVPV--YGIPPQ--------------FQQDFNGQNMRPQQQQQQQPRGG 528
Query: 541 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGM 596
P R+ + + L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM
Sbjct: 529 YYPNRNQTSKR-----DLAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGM 583
Query: 597 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 642
+L ++ E+L LL+ E +A+ + +A A++ A
Sbjct: 584 MLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/630 (42%), Positives = 378/630 (60%), Gaps = 77/630 (12%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
G+ +Q SLYVG+LD +VT++ L+++F+ +G V SVRVCRD TRRSLGY YVN+ N
Sbjct: 37 GSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHN 96
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 140
AD RAL+ LN++P+ + RIM+S RDP++RK+G GNI+IKNLD +ID+KALHDTFS+
Sbjct: 97 QADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSA 156
Query: 141 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 199
FG ILSCKIATD G S+GFGFV +E+ ESA++AI +NGML+NDK+VFVG + K +R
Sbjct: 157 FGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRM 216
Query: 200 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 258
K F NVF+KNL T+ + +++ ++G +S + + +GK FGFV+++
Sbjct: 217 QSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKE 276
Query: 259 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
D A KA++ L+ +F + + G+A+KK ER EL+ Q+E + E ++K+QG+NLYIKN
Sbjct: 277 HDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKN 336
Query: 319 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
L D+IDD+KL+ F+ GTITS KVM D +G SKG GFV +S+PEEA++A+ EMN +++
Sbjct: 337 LDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVA 396
Query: 379 SKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSVPPRMPMYPPGPSGLGQQFLY 433
KPLYV +AQRK+ RR++LQ Q +QMR A +P + M PG F
Sbjct: 397 GKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQY-MGNPG------VFYP 449
Query: 434 GQAPPAIIPPQAG---FG------------YQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 478
GQ P +PP G FG Q Q P P G PN + QG
Sbjct: 450 GQ--PGFMPPGRGGMPFGANPQMMMRPPMPPQNQFPPRGVPGG---PNMY----GAPPQG 500
Query: 479 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 538
+ GG GP++ Q PPR S P P
Sbjct: 501 YQQGGFPPQGPMRGGQ----------PPR----------------------SGQPGPQGQ 528
Query: 539 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV---EQLERDA--AAKV 593
G PRR G+ ++S AL NA EQ + L+GE+LYP V + ++ +A A K+
Sbjct: 529 FRGAPRRKD--GESRVADSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKI 586
Query: 594 TGMLLEMDQTEVLHLLESPEALKAKVAEAM 623
TGMLLEM E+L +++ E L+A++ +A+
Sbjct: 587 TGMLLEMPIKEILEVIDDEEGLQAQINDAI 616
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
+E E + + E+ KE D+ +LY+ L S+ + L E+F+ G +TS +V RD
Sbjct: 24 AEGEAKTESSEEKGSKE--DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDA 81
Query: 348 -SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
+ S G +V F + RAL E+N I +P + +QR
Sbjct: 82 ITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQR 124
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/458 (49%), Positives = 314/458 (68%), Gaps = 35/458 (7%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVG+L+ V+++ LYD+FS +G V S+RVCRD T SLGY YVN+ + +A++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LN+T + K RIM+S RDPS+RK G+GNI+IKNL +ID+K+LH+TFS+FGNILSCK+A
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 208
TD +G S+GFGFV FEN+ A++AI+ ++GML+ND++V+V + K++R++ +K KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
NV+VKN+D+ T+ E+ +++FG+YG ITSAV+ +D +GK + FGFVNFE+ AAKAV+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN +F ++ YVG+AQKK ER QELK Q+E A E + K+QG+NL++KNL DSIDDEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
KE F+ FGTITS KVMRD +G S+G GFV FSTPEEA++A+ E N +++ KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 389 RKEERRARLQAQF---SQMR----------------------PVAMGPSVPPRMPMYPPG 423
RKE RR +L Q +QMR P+ G +PPR+P P
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYG-GIPPRVPFQGPN 457
Query: 424 PSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 461
P + G +PPQ FG + G P G
Sbjct: 458 PQ------MAGMPKNGAMPPQQ-FGRPGPMYGGFAPQG 488
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ + A AA+A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 90 VLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
LN + + + + R + K N+F+KNLD SID +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 193
L + F+ FG I S K+ D +G S+GFGFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 194 LRKQER 199
RK+ R
Sbjct: 398 QRKEVR 403
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 369
G +LY+ L ++ + L ++FS G+++S +V RD + S G +V F E +A+
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 370 AEMNGKMIVSKPLYVAVAQRKEERRAR 396
++N +I KP + +QR R +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKK 123
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 574 LGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 622
LGE LY V +D AA K+TGM+L++ +V+ LLE+ E L+ EA
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEA 558
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/535 (45%), Positives = 331/535 (61%), Gaps = 81/535 (15%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ L++LFSQ+G V S+RVCRD TRRSLGY YVNY + +D +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D +G SKG+GFV +E E+A AI +N ML+N+K+V+VG+ + K++R++ +K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F N++VKN+ TDE+ + +F +YG +TS+ + RD +GKS+ FGFVNF + AAKAV
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
E LNGK+F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D IDD+
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 327 KLKELFSEFGTITSCKVMRDPS-------------------------------------- 348
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 349 -------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 401
G SKG GFV FS P++A++A+AEMN +MI KPLYVA+AQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 402 SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 461
+ M + +GL QQ++ Q P P G Q +P P G
Sbjct: 484 QARNQLRMQQAA---------AQAGLPQQYM--QTPVYYAP-----GQQPNFMP---PGG 524
Query: 462 APMP----NFFVPVVSQGQQGQRP-----GGRRGAGPVQQTQQPLPIMP-HQMPP 506
MP +P V G+ GQ P GGR G P Q LPI P Q PP
Sbjct: 525 RGMPFPQGGLGMPAVQGGRPGQFPPYAQQGGRGGMPPQQ-----LPIYPLGQFPP 574
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 559 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 618
S A +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD E+++LLE AL AK
Sbjct: 681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAK 740
Query: 619 VAEAMEVLRSVAQQQ 633
V EAM V + Q
Sbjct: 741 VNEAMAVYDEYVKSQ 755
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 45/135 (33%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR---------------- 68
N++ +LY+ +L ++ D +L +FS+ G + S +V RD T
Sbjct: 344 NKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKK 403
Query: 69 ----------------------------RSLGYGYVNYANPADAARALDVLNFTPLNNKS 100
+S G+G+V ++NP DA +A+ +N + K
Sbjct: 404 EGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKP 463
Query: 101 IRIMYSHRDPSIRKS 115
+ + + R +RK+
Sbjct: 464 LYVALAQRK-DVRKN 477
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/375 (54%), Positives = 278/375 (74%), Gaps = 2/375 (0%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
SLYVG+LD N+T++ LYD+FS +G + S+RVCRD T+ SLGY YVNY + +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
LN+ +N + RIM+S RDP+IRK G+GNIFIKNL +ID+KALH+TFS+FG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKT 206
+A D +G S+GFGFV F+ + A++AI+ +NGML+N +V+V + K++R + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F N++VKN+D TTDE+ +++F +YG I SA + +D +GK K FGFVNF + + AAKAV
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
E LNGK+F + YVG+AQKK ER +ELK Q+EQ E + KFQG+NL+IKNL DSIDDE
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
KLKE F+ +GTITS +VMRD G SKG GFV FS+PEEA++A+ E N +++ KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 387 AQRKEERRARLQAQF 401
AQRK+ RR++L Q
Sbjct: 409 AQRKDVRRSQLAQQI 423
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 571 RTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 628
R LGE LY V + +AA K+TGM+L++ +V+ LL++ E + + EA+ +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 629 VAQQQ 633
++Q
Sbjct: 584 FKKEQ 588
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/457 (48%), Positives = 309/457 (67%), Gaps = 41/457 (8%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVGDL+ +V+++ LYD+FS +G V S+RVCRD T+ SLGY YVN+ + +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK- 207
IATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +TK
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
+ N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA KAV
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
EALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+DDE
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
KL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 387 AQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MPMYP 421
AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVPFNG 455
Query: 422 PGP-----------SGLGQQFLYGQAPPAIIPPQAGF 447
P P +G+ QF G P +PPQ GF
Sbjct: 456 PNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 568 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 626 LRSVAQQQ 633
S ++Q
Sbjct: 563 YESFKKEQ 570
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/460 (49%), Positives = 305/460 (66%), Gaps = 42/460 (9%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
++ SLYVGDLD +V+++ LYD+FS +G V S+RVCRD T+ SLGY YVN+ + A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++ LNFTP+ K RIM+S RDPS+RK G GNIFIKNL ID+KAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIK 205
K+ATD +G+SKGFG+V FE ESA AID LNGML+N ++++VG L K+ERE+ +K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
F NV++KN++ TTD++ +++ ++G S V+ R +G++K FGFVNF N +DA K
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
VE LN +F + YV +AQKK ER+QELK Q+E E + K+QG+NL+IKNL DSIDD
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
+KL+E F+ +GTITS KVM +G SKG GFV FSTPEEA++A+ E N +++ KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 386 VAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPPR-MPM 419
+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 393 IAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYG-VMPPRGVPF 451
Query: 420 YPPGP--SGLG---------QQFLYGQAPPAIIPPQAGFG 448
P P + +G QF G P +PPQ GF
Sbjct: 452 NGPNPQMANMGAMPKNGMPPHQFRNG--PVYGVPPQGGFA 489
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 353
+G E+ ETV +LY+ +L S+ + L ++FS G ++S +V RD + S G
Sbjct: 22 EGTNEENQSETV----SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG 77
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
+V F+ + A A+ ++N I K + +QR R +
Sbjct: 78 YAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 568 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 626 LRS 628
S
Sbjct: 561 YES 563
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/326 (57%), Positives = 247/326 (75%), Gaps = 2/326 (0%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
+ NQ + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY N A
Sbjct: 47 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 106
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
D RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FG
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 166
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 226
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+K F NV++KNLD D++ +K+F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 227 FEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 286
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL
Sbjct: 287 SAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 346
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRD 346
D IDDEKL+ELF +GTITS KVMRD
Sbjct: 347 DDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 21/300 (7%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 229 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 289 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 345
+R+ +E+K F N+YIKNL IDD++ +++F +FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
D G S+G GFV FST E A A+ EMN K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 146/324 (45%), Gaps = 75/324 (23%)
Query: 342 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 401
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 402 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 456
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 457 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 509
RP P P P GQQG RG GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 510 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 542
Y M F GAG VP + MG G+
Sbjct: 589 GY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 543 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 593
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 594 TGMLLEMDQTEVLHLLESPEALKA 617
TGMLLEMD TE+L L P A ++
Sbjct: 698 TGMLLEMDNTELLSLTRKPCAPRS 721
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T++Y+ +LD + D + +F + G++ S + RD + S G+G+VN++ A A++
Sbjct: 235 TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVE 293
Query: 90 VLNFTPLNNKSI---RIMYSH-RDPSIRKSGTG------------NIFIKNLDKSIDHKA 133
+N + ++ + R H R+ +RK N+++KNL ID +
Sbjct: 294 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 353
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 193
L + F +G I S K+ D E +S +A + NDK+
Sbjct: 354 LRELFGPYGTITSAKVMRD----------TNVERDQSPDSAGKEKEADKENDKEATPEAE 403
Query: 194 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253
++ E + ++ + K D KK FG KSK FGF
Sbjct: 404 KAEKAEEKPSESSEEKDKEAKKSD--------KKPFG----------------KSKGFGF 439
Query: 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
V F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 440 VCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 485
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/320 (57%), Positives = 246/320 (76%), Gaps = 2/320 (0%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVNY N AD RAL
Sbjct: 48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 107
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 108 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 167
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++ +K
Sbjct: 168 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 227
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN+D+ T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF + A AV
Sbjct: 228 NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 287
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +DDE
Sbjct: 288 DEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 347
Query: 327 KLKELFSEFGTITSCKVMRD 346
KL+ELF +GTITS KVMRD
Sbjct: 348 KLRELFGPYGTITSAKVMRD 367
Score = 239 bits (609), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 224/688 (32%), Positives = 321/688 (46%), Gaps = 131/688 (19%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD + + L+D F+ G +LS +V +D S GYG+V+Y A A+
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 196
Query: 91 LNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144
+N LN+K + + + S +D + K+ N++IKN+D+ + + + F FG I
Sbjct: 197 VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI 256
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--- 201
S ++ D G+S+GFGFV F ESAQ A+D++N I ++++VG +K ERE
Sbjct: 257 TSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Query: 202 ---------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
A K + N++VKNL + DE L+++FG YGTITSA VMRD
Sbjct: 317 KQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD--------- 367
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
N E D+E +A K++E+E + E+ ++ D G
Sbjct: 368 -TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS--GD 413
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
D + L G SKG GFV FS+P+EAS+A+ EM
Sbjct: 414 EKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAVTEM 453
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLG 428
N +M+ KPLYVA+AQRK+ RR++L+A + + P+ M P G G
Sbjct: 454 NQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPG 513
Query: 429 QQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 487
QQ F+ GQ PPQ G +PG RP P P P GQQG R G
Sbjct: 514 QQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP---FP----GQQGGR-----GM 559
Query: 488 GPVQQTQ---QPLPIMPHQMP-PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP--VDMGAG 541
GP QQ Q +P+ Q P P G Y P G M F GAG VP +MG G
Sbjct: 560 GPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQVQFGRGAGGRGQVPGMPNMGQG 615
Query: 542 ------------IPRRD----------------ASVGQPMPITA---LSTALANASPEQQ 570
+P + A G+P A + AL+ A P QQ
Sbjct: 616 MRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQ 675
Query: 571 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL---- 626
+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L LLE EAL+AKV EA+ V
Sbjct: 676 KQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNVYDEYM 735
Query: 627 -----RSVAQQQANNPADQLASLSLNEN 649
S A +A P + S EN
Sbjct: 736 KNKGGESEATGEAAKPKEAAKETSTEEN 763
Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 21/309 (6%)
Query: 101 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKG 159
+ + S P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 160 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 219
+ +V + N + A++ LN LI K + +R+ KT NVF+KNLD +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 220 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 279
++ L F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 280 YVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 336
+VG K +R+ +E+K F N+YIKN+ + +E+ +ELF +FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 337 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
ITS + RD G S+G GFV FST E A A+ EMN K I ++ LYV AQ+K ER
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 397 LQAQFSQMR 405
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 238/608 (39%), Positives = 345/608 (56%), Gaps = 53/608 (8%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
+T SLYVGDL +VT+ LYD F++ + SVR+C+D S+ RSL YGY N+ + DA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++ N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
K+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +R V + K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEEK 199
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N +DA +A E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+NG KF + YVG+AQKK+EREQ L+ QF++ +E + N+Y+KN+ ++ +E+
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 388 QRKEERRARLQAQFS---QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ 444
Q+KE+R+ +LQ QF + R + SV P Y P Y P ++
Sbjct: 380 QKKEDRKMQLQVQFGNRVEARKSSSSASVNP--GTYAP--------LYYTNTHPGMV--- 426
Query: 445 AGFGYQQQ--LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 502
YQ + G+ PN P M
Sbjct: 427 ----YQSYPLMWKSANMIGSSYPN-------------------------SEAVTYPPMVA 457
Query: 503 QMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 560
P + R L RN + P + MLP+ D R G+ M +
Sbjct: 458 NAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQR 517
Query: 561 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 620
E Q LLGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L +V
Sbjct: 518 QSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVD 575
Query: 621 EAMEVLRS 628
EA EVL+S
Sbjct: 576 EAFEVLKS 583
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 248/321 (77%), Gaps = 3/321 (0%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ L++LFSQ+G V S+RVCRD TRRSLGY YVNY AD +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++ +K
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKA 265
F N++VKN++ TD++ + +F +YG +TS+ + RD + GKS+ FGFVNF + +DA+KA
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
V+ LN K+F + YVG+AQKK ERE+EL+ +E A +E K+QG+NLYIKNL D +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 326 EKLKELFSEFGTITSCKVMRD 346
EKL++LFSEFG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 175
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 235
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 236 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ--- 292
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGIS 351
E+K F N+Y+KN+ + D++ + LF ++G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 352 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+G GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 71/339 (20%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD + + L+D F+ G +LS +V +D S GYG+V+Y A++A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKH 208
Query: 91 LNFTPLNNKSIRIMYS--HRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144
+N LN K + + + +D + K+ NI++KN++ + F +G++
Sbjct: 209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268
Query: 145 LSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-- 201
S +A D +G+S+GFGFV F + E A A+ +LN + + ++VG +K ERE
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL 328
Query: 202 ----------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-------- 243
A K + N+++KNLD+ DE L+++F E+G ITSA VMRD
Sbjct: 329 RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEE 388
Query: 244 ---------------------GDGKS------------------KCFGFVNFENADDAAK 264
GD K FGFV F N DDA K
Sbjct: 389 GESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATK 448
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 303
AV +N + +++ YV AQ+K R K Q EQ+++
Sbjct: 449 AVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDVAIDNKAL 165
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 389 RKEERRAR---LQAQFSQMRPVAMGPSV 413
K++R+++ ++A F+ + + P V
Sbjct: 226 PKKDRQSKFDEMKANFTNIYVKNINPEV 253
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 566 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 625
+P QQ+ +LGE+++P ++ + + A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 676 NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Query: 626 LRSVAQQQANNPADQLAS 643
+QQ + Q S
Sbjct: 736 YDDYVRQQGDGEGAQAPS 753
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 47/137 (34%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR---------------- 68
+++ +LY+ +LD V D +L LFS+ G + S +V RD T
Sbjct: 341 SKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKN 400
Query: 69 ------------------------------RSLGYGYVNYANPADAARALDVLNFTPLNN 98
+S G+G+V +ANP DA +A+ +N +NN
Sbjct: 401 KENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNN 460
Query: 99 KSIRIMYSHRDPSIRKS 115
K + + + R +RK+
Sbjct: 461 KPLYVALAQRK-DVRKN 476
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 242/318 (76%), Gaps = 2/318 (0%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ SLYVG+LD +VT++ L++LFS +GQV S+RVCRD TRRSLGY YVNY + D +AL
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK
Sbjct: 107 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 166
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER + +K
Sbjct: 167 VAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 226
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F N++VKN+D TDED +++F ++G ITSA + RD GKS+ FGFVN+ + AA AV
Sbjct: 227 NFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ LN +F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +DDE
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 327 KLKELFSEFGTITSCKVM 344
KL+++F+ FGTITS KV+
Sbjct: 347 KLRDMFTPFGTITSAKVI 364
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 175
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 235
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 236 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 292
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 352
E+K F N+Y+KN+ + DE +ELF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSR 269
Query: 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G GFV + E A+ A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 76/342 (22%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD + + L+D F+ G +LS +V +D S GYG+V+Y A A+
Sbjct: 137 NVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKH 195
Query: 91 LNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
+N LN K ++ H P K+ NI++KN+D + + + F G
Sbjct: 196 VNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG 253
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
+I S IA D G+S+GFGFV + E+A A+D LN + ++++VG +K ERE
Sbjct: 254 DITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEE 313
Query: 202 ---------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM--------- 241
+ ++K+ N+++KNL++ DE L+ +F +GTITSA V+
Sbjct: 314 LRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDE 373
Query: 242 ---------------------------------RDGD-----------GKSKCFGFVNFE 257
+ GD GKSK FGFV F
Sbjct: 374 EEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFS 433
Query: 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 434 NPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 475
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 560 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 619
+ L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 620 AEAMEV 625
EAM V
Sbjct: 713 DEAMSV 718
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/367 (51%), Positives = 260/367 (70%), Gaps = 6/367 (1%)
Query: 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
++ SLYVGDL +VT+ L+ FS VG VLS+R+CRD TRRSLGY YVN+ ADA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 86 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+FG IL
Sbjct: 66 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE ++
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA-ELR 183
Query: 206 TK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 262
+K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 243
Query: 263 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 322
KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKNL D+
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 303
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382
IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++ SKPL
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 383 YVAVAQR 389
+A+AQR
Sbjct: 363 SIALAQR 369
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 201 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 259
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 315
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 375
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 376 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 409
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (823), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 242/359 (67%), Gaps = 7/359 (1%)
Query: 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93
VGDLD +VT+ LY F G + R+CRD TR LGYGYVN+ PADA AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 94 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 153
+N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+FGNILSCK+ D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FN 209
+G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER ++T+ F
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFT 199
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E + A KAV L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL ++I+DEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 420
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,099,791
Number of Sequences: 539616
Number of extensions: 11533015
Number of successful extensions: 45661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 649
Number of HSP's that attempted gapping in prelim test: 37303
Number of HSP's gapped (non-prelim): 5410
length of query: 652
length of database: 191,569,459
effective HSP length: 124
effective length of query: 528
effective length of database: 124,657,075
effective search space: 65818935600
effective search space used: 65818935600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)