Query 006282
Match_columns 652
No_of_seqs 418 out of 3109
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 21:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 3.4E-99 7E-104 846.2 59.0 556 30-627 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 2.3E-61 5E-66 499.2 30.0 360 30-404 2-363 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.2E-49 9.1E-54 430.4 35.3 348 28-389 1-479 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.1E-44 1.3E-48 378.1 30.1 340 28-391 2-350 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.9E-40 1.1E-44 368.4 42.1 266 29-295 88-372 (562)
6 KOG0145 RNA-binding protein EL 100.0 1.1E-40 2.3E-45 308.3 23.6 313 25-390 37-358 (360)
7 KOG0117 Heterogeneous nuclear 100.0 1.9E-38 4.2E-43 315.0 39.8 283 78-397 41-338 (506)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 9.2E-40 2E-44 352.7 27.8 297 26-339 55-369 (578)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 9.2E-38 2E-42 337.2 27.8 281 80-392 18-309 (578)
10 KOG0117 Heterogeneous nuclear 100.0 1.1E-37 2.3E-42 309.7 24.4 253 22-290 76-334 (506)
11 KOG0127 Nucleolar protein fibr 100.0 2.1E-37 4.5E-42 314.0 24.5 343 30-372 6-516 (678)
12 KOG0148 Apoptosis-promoting RN 100.0 7.9E-37 1.7E-41 285.0 18.7 236 116-393 5-241 (321)
13 TIGR01645 half-pint poly-U bin 100.0 1E-35 2.3E-40 321.4 29.2 168 28-195 106-283 (612)
14 KOG0144 RNA-binding protein CU 100.0 1.6E-36 3.4E-41 299.9 19.2 362 22-390 27-504 (510)
15 TIGR01622 SF-CC1 splicing fact 100.0 4.2E-35 9.1E-40 321.3 30.7 342 26-393 86-451 (457)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.7E-35 8E-40 320.7 26.2 262 117-390 2-351 (481)
17 KOG0148 Apoptosis-promoting RN 100.0 7.1E-34 1.5E-38 265.3 18.8 220 27-286 4-237 (321)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-32 4.1E-37 304.5 28.4 254 26-286 172-501 (509)
19 KOG0127 Nucleolar protein fibr 100.0 8.4E-33 1.8E-37 280.6 22.7 276 118-393 6-381 (678)
20 KOG0123 Polyadenylate-binding 100.0 3.7E-32 8.1E-37 281.7 23.4 256 119-402 3-258 (369)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.5E-32 9.7E-37 301.5 25.1 270 116-391 174-503 (509)
22 KOG0110 RNA-binding protein (R 100.0 7.2E-32 1.6E-36 283.2 18.0 328 28-392 226-695 (725)
23 TIGR01659 sex-lethal sex-letha 100.0 4.6E-30 9.9E-35 265.0 21.0 170 25-196 103-275 (346)
24 TIGR01659 sex-lethal sex-letha 100.0 2.5E-28 5.4E-33 252.1 22.0 169 205-391 104-276 (346)
25 smart00517 PolyA C-terminal do 100.0 3.1E-30 6.7E-35 191.2 5.3 64 566-629 1-64 (64)
26 KOG4212 RNA-binding protein hn 100.0 2.9E-27 6.2E-32 234.0 20.4 239 25-276 40-283 (608)
27 KOG0144 RNA-binding protein CU 99.9 8.8E-28 1.9E-32 238.1 13.1 172 207-395 33-211 (510)
28 TIGR01645 half-pint poly-U bin 99.9 6.3E-27 1.4E-31 253.4 18.8 178 206-390 105-284 (612)
29 PF00658 PABP: Poly-adenylate 99.9 1.1E-27 2.3E-32 185.4 5.6 71 556-626 2-72 (72)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.7E-26 1.5E-30 240.1 20.5 170 28-197 88-350 (352)
31 KOG1190 Polypyrimidine tract-b 99.9 2.3E-25 5.1E-30 219.4 20.2 348 26-389 25-490 (492)
32 KOG0131 Splicing factor 3b, su 99.9 2.5E-26 5.4E-31 203.2 11.7 172 25-197 5-178 (203)
33 KOG0110 RNA-binding protein (R 99.9 2.3E-25 5E-30 234.5 18.6 259 27-291 383-697 (725)
34 KOG0124 Polypyrimidine tract-b 99.9 2.6E-25 5.6E-30 215.5 16.7 166 29-194 113-288 (544)
35 KOG0147 Transcriptional coacti 99.9 5.3E-25 1.2E-29 226.0 13.5 328 26-390 176-528 (549)
36 TIGR01622 SF-CC1 splicing fact 99.9 4.4E-24 9.6E-29 234.1 19.7 178 206-390 87-266 (457)
37 KOG0145 RNA-binding protein EL 99.9 4.5E-24 9.8E-29 198.2 13.0 169 205-391 38-210 (360)
38 KOG0124 Polypyrimidine tract-b 99.9 3.1E-23 6.8E-28 201.1 18.9 270 118-387 114-532 (544)
39 KOG0131 Splicing factor 3b, su 99.9 1.6E-23 3.5E-28 185.4 9.9 171 206-393 7-180 (203)
40 KOG4211 Splicing factor hnRNP- 99.9 1.2E-21 2.6E-26 198.8 21.9 336 27-370 8-490 (510)
41 KOG0146 RNA-binding protein ET 99.9 1.2E-22 2.7E-27 189.4 12.6 186 207-392 18-367 (371)
42 KOG1456 Heterogeneous nuclear 99.9 5.5E-20 1.2E-24 179.4 27.5 343 22-379 24-474 (494)
43 KOG0109 RNA-binding protein LA 99.9 1.4E-21 3.1E-26 185.0 10.0 147 210-390 4-150 (346)
44 KOG0109 RNA-binding protein LA 99.9 2.4E-21 5.3E-26 183.4 10.7 150 30-198 3-152 (346)
45 KOG4212 RNA-binding protein hn 99.8 7.5E-20 1.6E-24 181.7 13.1 247 118-388 45-292 (608)
46 KOG4211 Splicing factor hnRNP- 99.8 1.6E-17 3.5E-22 168.9 20.1 260 117-382 10-350 (510)
47 KOG4205 RNA-binding protein mu 99.8 8.2E-19 1.8E-23 175.6 10.3 171 28-200 5-180 (311)
48 KOG1365 RNA-binding protein Fu 99.7 7.5E-17 1.6E-21 158.2 19.5 287 27-393 58-365 (508)
49 KOG0146 RNA-binding protein ET 99.7 1.1E-17 2.3E-22 156.7 12.6 188 98-287 2-365 (371)
50 KOG4205 RNA-binding protein mu 99.7 2.6E-18 5.6E-23 172.0 8.6 174 207-394 5-180 (311)
51 KOG1190 Polypyrimidine tract-b 99.7 3E-16 6.5E-21 155.5 20.9 252 24-286 145-490 (492)
52 KOG4206 Spliceosomal protein s 99.7 6.1E-17 1.3E-21 150.1 15.0 157 29-192 9-218 (221)
53 KOG0105 Alternative splicing f 99.7 6.3E-17 1.4E-21 143.6 13.7 148 27-183 4-175 (241)
54 PLN03134 glycine-rich RNA-bind 99.7 7.3E-17 1.6E-21 146.0 13.1 90 22-111 27-116 (144)
55 KOG0147 Transcriptional coacti 99.7 1.5E-17 3.3E-22 171.5 8.8 180 206-390 177-358 (549)
56 KOG0120 Splicing factor U2AF, 99.7 2.4E-16 5.2E-21 165.3 15.8 256 24-286 170-491 (500)
57 KOG0120 Splicing factor U2AF, 99.7 2E-16 4.4E-21 165.8 12.5 268 117-390 175-492 (500)
58 PLN03134 glycine-rich RNA-bind 99.6 1E-15 2.2E-20 138.6 10.8 82 309-390 32-114 (144)
59 KOG4206 Spliceosomal protein s 99.6 6.8E-15 1.5E-19 136.6 14.0 175 208-388 9-220 (221)
60 KOG1456 Heterogeneous nuclear 99.6 3.7E-13 8E-18 132.1 22.1 244 23-276 114-474 (494)
61 KOG0132 RNA polymerase II C-te 99.6 4.5E-13 9.7E-18 143.1 23.3 80 310-394 420-499 (894)
62 PF00076 RRM_1: RNA recognitio 99.6 1.3E-14 2.8E-19 115.0 9.0 70 32-102 1-70 (70)
63 PF00076 RRM_1: RNA recognitio 99.5 2.8E-14 6E-19 113.1 8.8 70 314-383 1-70 (70)
64 KOG0105 Alternative splicing f 99.5 1.2E-13 2.5E-18 123.0 12.5 172 207-386 5-186 (241)
65 KOG1548 Transcription elongati 99.5 4.8E-13 1E-17 130.7 16.8 180 206-388 132-350 (382)
66 KOG0125 Ataxin 2-binding prote 99.5 3.3E-14 7.2E-19 137.6 7.8 81 309-390 94-174 (376)
67 KOG0122 Translation initiation 99.5 6.1E-14 1.3E-18 130.7 8.9 84 26-109 186-269 (270)
68 KOG0149 Predicted RNA-binding 99.5 3.8E-14 8.3E-19 131.7 6.9 79 310-389 11-90 (247)
69 KOG0106 Alternative splicing f 99.5 1.8E-14 3.9E-19 135.5 4.7 168 210-391 3-172 (216)
70 KOG0121 Nuclear cap-binding pr 99.5 6.5E-14 1.4E-18 117.2 7.4 84 26-109 33-116 (153)
71 KOG0106 Alternative splicing f 99.5 4.3E-14 9.3E-19 132.9 7.2 150 30-194 2-169 (216)
72 KOG0149 Predicted RNA-binding 99.5 7.1E-14 1.5E-18 129.9 7.8 78 29-107 12-89 (247)
73 KOG1548 Transcription elongati 99.5 9.2E-13 2E-17 128.7 15.6 165 26-194 131-350 (382)
74 KOG4307 RNA binding protein RB 99.5 2.7E-13 5.8E-18 142.6 12.3 357 27-386 309-943 (944)
75 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.7E-18 108.6 8.4 70 32-102 1-70 (70)
76 PF14259 RRM_6: RNA recognitio 99.5 2.9E-13 6.3E-18 107.3 9.0 70 314-383 1-70 (70)
77 KOG1457 RNA binding protein (c 99.5 1.4E-12 2.9E-17 119.7 14.1 157 24-183 29-273 (284)
78 COG0724 RNA-binding proteins ( 99.4 7.7E-13 1.7E-17 135.1 14.0 147 29-175 115-284 (306)
79 KOG0122 Translation initiation 99.4 2.2E-13 4.9E-18 127.0 8.5 82 309-390 187-269 (270)
80 KOG0107 Alternative splicing f 99.4 3E-13 6.5E-18 119.8 8.1 80 27-111 8-87 (195)
81 PLN03120 nucleic acid binding 99.4 5.3E-13 1.2E-17 129.0 10.0 76 29-108 4-79 (260)
82 PLN03120 nucleic acid binding 99.4 1.2E-12 2.5E-17 126.7 10.1 75 311-388 4-78 (260)
83 KOG1457 RNA binding protein (c 99.4 4.3E-12 9.2E-17 116.5 12.7 170 206-378 32-274 (284)
84 KOG0126 Predicted RNA-binding 99.4 6.5E-14 1.4E-18 124.4 0.2 80 28-107 34-113 (219)
85 KOG0128 RNA-binding protein SA 99.4 5.3E-15 1.1E-19 159.7 -8.3 323 28-389 478-814 (881)
86 KOG0114 Predicted RNA-binding 99.4 2.5E-12 5.4E-17 103.7 8.4 85 22-109 11-95 (124)
87 KOG4207 Predicted splicing fac 99.4 1.1E-12 2.4E-17 119.0 7.0 84 25-108 9-92 (256)
88 KOG0107 Alternative splicing f 99.4 1.7E-12 3.8E-17 115.0 7.6 78 309-390 8-85 (195)
89 KOG0113 U1 small nuclear ribon 99.3 3.3E-12 7.1E-17 122.5 9.4 83 24-106 96-178 (335)
90 KOG4207 Predicted splicing fac 99.3 1.3E-12 2.8E-17 118.6 6.2 78 311-388 13-91 (256)
91 PLN03121 nucleic acid binding 99.3 4.3E-12 9.2E-17 120.6 9.8 76 28-107 4-79 (243)
92 PLN03213 repressor of silencin 99.3 6.6E-12 1.4E-16 127.4 11.1 81 309-392 8-90 (759)
93 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 98.2 9.6 72 313-385 1-72 (72)
94 smart00362 RRM_2 RNA recogniti 99.3 7.5E-12 1.6E-16 99.0 8.8 71 31-103 1-71 (72)
95 PLN03213 repressor of silencin 99.3 5.1E-12 1.1E-16 128.2 9.6 116 27-149 8-135 (759)
96 KOG0125 Ataxin 2-binding prote 99.3 3.9E-12 8.5E-17 123.4 8.0 103 91-196 72-174 (376)
97 COG0724 RNA-binding proteins ( 99.3 1.3E-11 2.9E-16 125.9 12.3 164 208-371 115-286 (306)
98 PLN03121 nucleic acid binding 99.3 9.6E-12 2.1E-16 118.2 10.0 76 310-388 4-79 (243)
99 smart00360 RRM RNA recognition 99.3 1E-11 2.3E-16 97.7 8.6 70 34-103 1-70 (71)
100 KOG0130 RNA-binding protein RB 99.3 4.9E-12 1.1E-16 106.9 6.8 84 26-109 69-152 (170)
101 KOG0108 mRNA cleavage and poly 99.3 7.5E-12 1.6E-16 131.3 9.5 81 30-110 19-99 (435)
102 KOG0126 Predicted RNA-binding 99.3 4.5E-13 9.8E-18 119.1 -0.1 76 311-386 35-111 (219)
103 KOG0114 Predicted RNA-binding 99.3 2.7E-11 5.8E-16 97.8 9.2 81 310-392 17-97 (124)
104 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.3E-16 118.0 9.0 83 308-390 98-181 (335)
105 KOG4307 RNA binding protein RB 99.2 5.1E-10 1.1E-14 118.4 20.2 167 120-288 314-515 (944)
106 KOG0121 Nuclear cap-binding pr 99.2 1.5E-11 3.2E-16 103.2 6.7 82 310-391 35-117 (153)
107 cd00590 RRM RRM (RNA recogniti 99.2 5.3E-11 1.2E-15 94.6 9.5 74 31-105 1-74 (74)
108 smart00360 RRM RNA recognition 99.2 4.4E-11 9.5E-16 94.1 8.9 70 316-385 1-71 (71)
109 KOG0111 Cyclophilin-type pepti 99.2 6.7E-12 1.5E-16 114.8 4.3 84 27-110 8-91 (298)
110 KOG4660 Protein Mei2, essentia 99.2 1.4E-11 3.1E-16 128.0 7.0 154 26-191 72-245 (549)
111 cd00590 RRM RRM (RNA recogniti 99.2 8.8E-11 1.9E-15 93.3 10.1 74 313-386 1-74 (74)
112 PF13893 RRM_5: RNA recognitio 99.2 9.3E-11 2E-15 88.2 8.7 56 328-387 1-56 (56)
113 KOG0111 Cyclophilin-type pepti 99.2 1.6E-11 3.5E-16 112.4 3.6 83 310-392 9-92 (298)
114 KOG0108 mRNA cleavage and poly 99.2 6.2E-11 1.4E-15 124.4 8.6 84 312-395 19-103 (435)
115 PF13893 RRM_5: RNA recognitio 99.1 1E-10 2.3E-15 88.0 6.6 56 46-106 1-56 (56)
116 KOG0132 RNA polymerase II C-te 99.1 8.2E-10 1.8E-14 118.6 15.6 111 206-334 419-529 (894)
117 smart00361 RRM_1 RNA recogniti 99.1 2E-10 4.4E-15 90.6 8.2 60 325-384 2-69 (70)
118 KOG1365 RNA-binding protein Fu 99.1 1.1E-10 2.4E-15 115.2 7.9 160 29-190 161-356 (508)
119 KOG0130 RNA-binding protein RB 99.1 8E-11 1.7E-15 99.6 5.8 83 308-390 69-152 (170)
120 KOG0128 RNA-binding protein SA 99.1 1.3E-11 2.8E-16 133.9 0.4 234 26-283 568-811 (881)
121 KOG4454 RNA binding protein (R 99.1 2.6E-11 5.7E-16 111.2 2.2 153 25-190 5-157 (267)
122 smart00361 RRM_1 RNA recogniti 99.1 3E-10 6.4E-15 89.7 7.6 61 43-103 2-69 (70)
123 KOG0226 RNA-binding proteins [ 99.0 4.2E-10 9.1E-15 105.8 5.4 169 211-391 99-271 (290)
124 KOG4454 RNA binding protein (R 99.0 2.4E-10 5.2E-15 105.0 2.0 138 207-376 8-149 (267)
125 KOG0415 Predicted peptidyl pro 98.9 1.4E-09 3E-14 106.6 6.7 86 24-109 234-319 (479)
126 KOG4208 Nucleolar RNA-binding 98.9 2.1E-09 4.6E-14 98.5 7.1 82 26-107 46-128 (214)
127 KOG0129 Predicted RNA-binding 98.9 1.3E-08 2.9E-13 105.4 13.4 152 26-177 256-432 (520)
128 KOG0153 Predicted RNA-binding 98.9 3.9E-09 8.4E-14 103.8 8.0 79 306-389 223-302 (377)
129 KOG4849 mRNA cleavage factor I 98.9 1.9E-07 4.1E-12 91.6 18.8 76 311-386 80-158 (498)
130 KOG4208 Nucleolar RNA-binding 98.8 6.6E-09 1.4E-13 95.3 7.3 79 312-390 50-130 (214)
131 KOG0226 RNA-binding proteins [ 98.8 4.7E-09 1E-13 98.9 5.5 154 135-288 117-271 (290)
132 KOG0153 Predicted RNA-binding 98.8 1.3E-08 2.8E-13 100.2 7.4 76 27-108 226-302 (377)
133 KOG0415 Predicted peptidyl pro 98.8 9.6E-09 2.1E-13 100.8 6.3 86 307-392 235-321 (479)
134 KOG0112 Large RNA-binding prot 98.7 1.2E-08 2.6E-13 111.7 4.7 161 205-390 369-531 (975)
135 KOG0129 Predicted RNA-binding 98.7 1.3E-07 2.7E-12 98.3 11.8 162 206-371 257-432 (520)
136 KOG4661 Hsp27-ERE-TATA-binding 98.6 5E-08 1.1E-12 101.2 7.2 82 308-389 402-484 (940)
137 KOG0533 RRM motif-containing p 98.6 1E-07 2.2E-12 92.3 8.1 79 312-390 84-162 (243)
138 KOG0151 Predicted splicing reg 98.6 8.2E-08 1.8E-12 102.4 7.9 83 26-108 171-256 (877)
139 KOG4661 Hsp27-ERE-TATA-binding 98.6 8.9E-08 1.9E-12 99.3 7.4 85 26-110 402-486 (940)
140 PF04059 RRM_2: RNA recognitio 98.6 3.7E-07 7.9E-12 75.6 9.2 79 30-108 2-86 (97)
141 KOG4210 Nuclear localization s 98.6 6.7E-08 1.5E-12 97.3 5.8 169 27-196 86-264 (285)
142 KOG4210 Nuclear localization s 98.6 4.2E-08 9.1E-13 98.8 3.8 175 207-390 87-264 (285)
143 KOG0112 Large RNA-binding prot 98.5 5.3E-08 1.2E-12 106.7 3.9 160 24-193 367-528 (975)
144 KOG0533 RRM motif-containing p 98.5 4.2E-07 9.1E-12 88.1 8.2 81 28-109 82-162 (243)
145 KOG0116 RasGAP SH3 binding pro 98.4 5.6E-07 1.2E-11 94.4 8.4 83 25-108 284-366 (419)
146 KOG0151 Predicted splicing reg 98.4 1.3E-06 2.8E-11 93.5 9.7 83 308-390 171-257 (877)
147 PF11608 Limkain-b1: Limkain b 98.4 2E-06 4.3E-11 67.5 7.9 70 30-109 3-77 (90)
148 KOG4209 Splicing factor RNPS1, 98.3 7.1E-07 1.5E-11 86.9 5.5 82 26-108 98-179 (231)
149 PF04059 RRM_2: RNA recognitio 98.2 6.1E-06 1.3E-10 68.4 8.7 79 312-390 2-87 (97)
150 KOG0116 RasGAP SH3 binding pro 98.2 2.2E-06 4.7E-11 90.0 7.0 79 310-389 287-366 (419)
151 KOG4660 Protein Mei2, essentia 98.1 1.8E-06 4E-11 90.6 3.3 70 310-383 74-143 (549)
152 KOG4209 Splicing factor RNPS1, 98.1 4.8E-06 1E-10 81.1 5.5 80 309-389 99-179 (231)
153 KOG2193 IGF-II mRNA-binding pr 98.1 9.2E-07 2E-11 89.1 0.3 154 30-195 2-156 (584)
154 PF11608 Limkain-b1: Limkain b 97.9 5E-05 1.1E-09 59.8 6.6 69 313-390 4-77 (90)
155 PF08777 RRM_3: RNA binding mo 97.8 4.2E-05 9.2E-10 65.0 6.5 78 311-393 1-83 (105)
156 KOG2193 IGF-II mRNA-binding pr 97.7 1E-05 2.2E-10 81.7 0.8 155 209-392 2-159 (584)
157 KOG4676 Splicing factor, argin 97.7 2.6E-05 5.7E-10 78.2 3.5 172 210-386 9-222 (479)
158 PF08777 RRM_3: RNA binding mo 97.7 7.6E-05 1.6E-09 63.5 5.8 60 29-94 1-60 (105)
159 KOG4849 mRNA cleavage factor I 97.7 0.0024 5.1E-08 63.4 16.5 78 208-285 80-160 (498)
160 KOG1995 Conserved Zn-finger pr 97.6 8.5E-05 1.8E-09 74.5 6.2 86 25-110 62-155 (351)
161 KOG4676 Splicing factor, argin 97.6 7.1E-05 1.5E-09 75.2 5.3 203 31-275 9-214 (479)
162 KOG1924 RhoA GTPase effector D 97.6 0.00049 1.1E-08 75.1 10.9 19 40-58 82-100 (1102)
163 KOG0115 RNA-binding protein p5 97.5 0.00015 3.2E-09 69.3 5.8 93 261-378 6-98 (275)
164 KOG2314 Translation initiation 97.4 0.00025 5.4E-09 74.6 6.3 78 310-387 57-141 (698)
165 KOG1995 Conserved Zn-finger pr 97.4 0.00016 3.4E-09 72.6 4.0 83 309-391 64-155 (351)
166 COG5175 MOT2 Transcriptional r 97.4 0.00037 7.9E-09 68.7 6.4 82 27-108 112-202 (480)
167 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00043 9.4E-09 50.8 5.3 52 30-88 2-53 (53)
168 KOG0943 Predicted ubiquitin-pr 97.3 9.9E-05 2.1E-09 83.0 1.9 67 570-636 2607-2675(3015)
169 KOG0115 RNA-binding protein p5 97.2 0.00055 1.2E-08 65.5 5.9 89 82-179 5-93 (275)
170 KOG1855 Predicted RNA-binding 97.1 0.00045 9.9E-09 70.5 4.2 67 26-92 228-307 (484)
171 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0014 3E-08 48.2 4.9 52 312-369 2-53 (53)
172 KOG1924 RhoA GTPase effector D 97.0 0.0035 7.5E-08 68.7 9.8 11 168-178 209-219 (1102)
173 COG5175 MOT2 Transcriptional r 97.0 0.0023 5E-08 63.2 7.4 82 310-391 113-204 (480)
174 KOG2202 U2 snRNP splicing fact 96.9 0.00049 1.1E-08 66.0 2.2 71 326-396 83-154 (260)
175 KOG2202 U2 snRNP splicing fact 96.9 0.00045 9.7E-09 66.3 1.7 63 44-107 83-146 (260)
176 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0048 1E-07 51.6 7.1 76 311-388 6-90 (100)
177 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0045 9.8E-08 51.8 6.7 77 28-106 5-89 (100)
178 KOG3152 TBP-binding protein, a 96.7 0.0013 2.8E-08 63.0 3.7 73 28-100 73-157 (278)
179 KOG1996 mRNA splicing factor [ 96.7 0.0057 1.2E-07 59.5 7.6 82 313-394 283-371 (378)
180 KOG2314 Translation initiation 96.7 0.00075 1.6E-08 71.1 1.6 77 207-283 57-139 (698)
181 PF08952 DUF1866: Domain of un 96.6 0.0081 1.8E-07 53.4 7.3 58 327-392 52-109 (146)
182 KOG1855 Predicted RNA-binding 96.5 0.0017 3.6E-08 66.6 2.9 68 309-376 229-310 (484)
183 PF08952 DUF1866: Domain of un 96.3 0.008 1.7E-07 53.4 5.8 72 28-108 26-106 (146)
184 KOG3152 TBP-binding protein, a 96.3 0.0026 5.6E-08 60.9 2.4 70 312-381 75-157 (278)
185 PF08675 RNA_bind: RNA binding 95.9 0.034 7.3E-07 44.1 6.8 56 29-93 9-64 (87)
186 PF10309 DUF2414: Protein of u 95.9 0.036 7.8E-07 41.8 6.4 54 312-372 6-62 (62)
187 PF15023 DUF4523: Protein of u 95.8 0.04 8.8E-07 48.2 7.3 75 26-108 83-161 (166)
188 KOG2416 Acinus (induces apopto 95.6 0.034 7.3E-07 59.5 7.5 83 309-396 442-528 (718)
189 PF15023 DUF4523: Protein of u 95.0 0.063 1.4E-06 47.0 5.9 74 309-389 84-161 (166)
190 KOG1996 mRNA splicing factor [ 94.9 0.064 1.4E-06 52.5 6.5 81 28-108 280-366 (378)
191 PF10567 Nab6_mRNP_bdg: RNA-re 94.8 0.67 1.5E-05 45.9 13.1 182 208-390 15-232 (309)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.036 7.7E-07 52.0 3.5 71 27-97 5-81 (176)
193 PF04847 Calcipressin: Calcipr 94.2 0.082 1.8E-06 49.8 5.2 61 324-389 8-70 (184)
194 PF08675 RNA_bind: RNA binding 94.0 0.2 4.3E-06 39.9 6.2 53 313-373 11-63 (87)
195 PF04847 Calcipressin: Calcipr 93.9 0.14 3E-06 48.2 6.2 62 42-109 8-71 (184)
196 PF10309 DUF2414: Protein of u 93.8 0.32 7E-06 36.7 6.8 53 30-91 6-62 (62)
197 KOG2135 Proteins containing th 93.7 0.046 1E-06 57.1 2.8 79 25-110 368-447 (526)
198 PF07576 BRAP2: BRCA1-associat 93.5 0.93 2E-05 38.8 10.0 75 29-105 13-91 (110)
199 KOG4574 RNA-binding protein (c 93.3 0.049 1.1E-06 60.7 2.4 73 31-109 300-374 (1007)
200 KOG2416 Acinus (induces apopto 93.0 0.08 1.7E-06 56.8 3.3 80 24-109 439-522 (718)
201 KOG4285 Mitotic phosphoprotein 92.8 0.33 7.3E-06 47.9 6.9 65 29-101 197-261 (350)
202 KOG2068 MOT2 transcription fac 92.5 0.054 1.2E-06 54.5 1.3 81 28-108 76-162 (327)
203 PF10567 Nab6_mRNP_bdg: RNA-re 92.3 3.1 6.8E-05 41.3 13.0 157 22-179 8-212 (309)
204 KOG0804 Cytoplasmic Zn-finger 92.0 0.73 1.6E-05 48.2 8.6 77 29-107 74-154 (493)
205 KOG2135 Proteins containing th 91.7 0.11 2.4E-06 54.4 2.4 73 312-390 373-446 (526)
206 PF07576 BRAP2: BRCA1-associat 91.4 1.1 2.3E-05 38.4 7.7 65 314-379 16-81 (110)
207 KOG2068 MOT2 transcription fac 91.2 0.11 2.4E-06 52.4 1.7 80 312-391 78-164 (327)
208 PF03880 DbpA: DbpA RNA bindin 91.1 0.57 1.2E-05 37.0 5.5 60 320-387 10-74 (74)
209 KOG2591 c-Mpl binding protein, 90.6 0.89 1.9E-05 48.7 7.8 81 85-179 151-233 (684)
210 KOG2591 c-Mpl binding protein, 90.6 0.6 1.3E-05 50.0 6.5 69 311-385 175-247 (684)
211 KOG2253 U1 snRNP complex, subu 90.2 0.021 4.6E-07 62.0 -4.5 120 206-333 38-157 (668)
212 PF11767 SET_assoc: Histone ly 89.8 1.4 3E-05 33.8 6.3 55 322-384 11-65 (66)
213 KOG4285 Mitotic phosphoprotein 89.5 0.66 1.4E-05 45.9 5.4 63 312-381 198-260 (350)
214 KOG2893 Zn finger protein [Gen 88.6 24 0.00052 33.9 15.0 49 320-369 17-65 (341)
215 KOG4574 RNA-binding protein (c 87.4 0.41 9E-06 53.7 2.8 72 314-390 301-374 (1007)
216 PF03467 Smg4_UPF3: Smg-4/UPF3 87.2 0.82 1.8E-05 42.9 4.4 70 310-379 6-82 (176)
217 KOG2318 Uncharacterized conser 86.1 3.4 7.4E-05 44.8 8.6 122 26-187 171-297 (650)
218 PF03880 DbpA: DbpA RNA bindin 85.9 2.4 5.2E-05 33.4 5.8 58 39-105 11-73 (74)
219 PF07292 NID: Nmi/IFP 35 domai 85.9 1.9 4.2E-05 35.1 5.3 79 161-246 1-83 (88)
220 PF11767 SET_assoc: Histone ly 84.3 3.6 7.8E-05 31.6 5.8 55 128-190 11-65 (66)
221 KOG0804 Cytoplasmic Zn-finger 81.8 4.4 9.5E-05 42.7 7.1 68 117-185 74-142 (493)
222 PF07292 NID: Nmi/IFP 35 domai 80.0 2.2 4.7E-05 34.8 3.4 65 74-138 1-73 (88)
223 PHA03378 EBNA-3B; Provisional 79.8 42 0.00092 37.5 13.8 21 567-587 838-858 (991)
224 KOG2253 U1 snRNP complex, subu 75.9 1.4 3.1E-05 48.4 1.6 70 310-387 39-108 (668)
225 PF14111 DUF4283: Domain of un 65.5 13 0.00028 33.7 5.4 115 32-152 18-140 (153)
226 PHA03378 EBNA-3B; Provisional 64.6 83 0.0018 35.3 11.7 12 311-322 538-549 (991)
227 KOG4019 Calcineurin-mediated s 64.4 4.2 9.2E-05 37.5 1.8 75 29-109 10-90 (193)
228 COG5638 Uncharacterized conser 62.6 38 0.00083 35.3 8.3 126 26-185 143-285 (622)
229 KOG2318 Uncharacterized conser 62.2 20 0.00044 39.2 6.6 79 309-387 172-305 (650)
230 PF14111 DUF4283: Domain of un 61.9 6.1 0.00013 35.9 2.5 85 157-242 54-139 (153)
231 KOG4019 Calcineurin-mediated s 60.5 5.5 0.00012 36.8 1.8 74 312-390 11-90 (193)
232 KOG2891 Surface glycoprotein [ 60.4 26 0.00057 34.4 6.5 108 127-241 47-194 (445)
233 smart00596 PRE_C2HC PRE_C2HC d 58.6 20 0.00044 27.6 4.3 63 44-109 2-65 (69)
234 PF07530 PRE_C2HC: Associated 56.8 26 0.00057 27.1 4.8 63 44-109 2-65 (68)
235 PRK14548 50S ribosomal protein 53.7 36 0.00078 27.6 5.3 58 313-372 22-81 (84)
236 TIGR03636 L23_arch archaeal ri 50.7 46 0.001 26.5 5.4 58 313-372 15-74 (77)
237 TIGR02542 B_forsyth_147 Bacter 50.7 34 0.00075 29.0 4.8 42 319-362 82-129 (145)
238 KOG4483 Uncharacterized conser 49.8 33 0.00071 35.7 5.4 60 311-377 391-451 (528)
239 PRK14548 50S ribosomal protein 47.6 63 0.0014 26.2 5.7 58 31-91 22-81 (84)
240 COG5180 PBP1 Protein interacti 47.6 1E+02 0.0022 33.0 8.7 18 251-268 325-342 (654)
241 TIGR03636 L23_arch archaeal ri 42.3 91 0.002 24.8 5.8 58 31-91 15-74 (77)
242 PF03468 XS: XS domain; Inter 41.3 34 0.00074 29.6 3.6 40 41-83 29-68 (116)
243 PF03468 XS: XS domain; Inter 40.3 22 0.00048 30.8 2.3 40 323-364 29-68 (116)
244 KOG4365 Uncharacterized conser 39.2 7.3 0.00016 40.8 -1.0 80 313-393 5-85 (572)
245 PF15513 DUF4651: Domain of un 37.9 61 0.0013 24.5 3.9 19 326-344 9-27 (62)
246 KOG2236 Uncharacterized conser 37.8 2.5E+02 0.0055 30.2 9.8 16 357-373 319-334 (483)
247 KOG1295 Nonsense-mediated deca 37.7 32 0.0007 35.8 3.3 65 29-93 7-74 (376)
248 KOG4410 5-formyltetrahydrofola 35.6 76 0.0016 31.6 5.3 52 26-82 327-378 (396)
249 KOG4410 5-formyltetrahydrofola 35.3 61 0.0013 32.2 4.6 46 119-169 332-378 (396)
250 TIGR02542 B_forsyth_147 Bacter 34.1 85 0.0018 26.8 4.6 108 37-168 11-129 (145)
251 PF15513 DUF4651: Domain of un 33.3 74 0.0016 24.0 3.8 19 223-241 9-27 (62)
252 KOG2891 Surface glycoprotein [ 30.7 53 0.0011 32.4 3.4 33 312-344 150-194 (445)
253 KOG4483 Uncharacterized conser 30.7 86 0.0019 32.8 5.0 59 29-95 391-450 (528)
254 PF15053 Njmu-R1: Mjmu-R1-like 30.3 1.4E+02 0.0031 30.8 6.4 60 17-80 25-94 (353)
255 PF11411 DNA_ligase_IV: DNA li 27.5 44 0.00096 22.2 1.6 17 39-55 19-35 (36)
256 COG5193 LHP1 La protein, small 27.3 65 0.0014 33.8 3.5 59 312-370 175-244 (438)
257 KOG2295 C2H2 Zn-finger protein 27.0 11 0.00023 40.9 -2.1 73 27-99 229-301 (648)
258 PTZ00191 60S ribosomal protein 26.7 1.5E+02 0.0033 26.7 5.3 56 313-370 83-140 (145)
259 COG5193 LHP1 La protein, small 23.9 37 0.00081 35.5 1.1 63 28-90 173-245 (438)
260 KOG4213 RNA-binding protein La 23.6 1.1E+02 0.0024 28.5 3.9 70 312-386 112-183 (205)
261 KOG3424 40S ribosomal protein 23.6 1E+02 0.0023 26.4 3.4 46 321-367 33-84 (132)
262 PF02714 DUF221: Domain of unk 23.4 1.4E+02 0.003 30.9 5.4 56 252-333 1-56 (325)
263 PF14893 PNMA: PNMA 23.4 74 0.0016 33.1 3.1 77 27-106 16-94 (331)
264 PRK10629 EnvZ/OmpR regulon mod 21.4 5.7E+02 0.012 22.5 8.1 70 29-106 35-108 (127)
265 PRK11901 hypothetical protein; 20.7 2.3E+02 0.005 29.2 5.9 66 28-98 244-311 (327)
266 COG5594 Uncharacterized integr 20.4 51 0.0011 38.0 1.4 40 25-64 204-246 (827)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.4e-99 Score=846.18 Aligned_cols=556 Identities=54% Similarity=0.864 Sum_probs=440.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
+||||+|||.++||++|+++|+.||+|.+|+||+|..|++|+|||||+|.+.+||++|++.+|+..|.|++|+|+|++++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeee
Q 006282 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (652)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~ 189 (652)
++.+.++.++|||+||+.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++++|+..+.++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHH
Q 006282 190 VGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269 (652)
Q Consensus 190 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l 269 (652)
+..+..+..+. ......+++|||+||+.++++++|+++|+.||.|.++.++++.+|+++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98877666553 12345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccC----CceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q 006282 270 NGKKFD----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 345 (652)
Q Consensus 270 ~~~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~ 345 (652)
++..+. ++.+++.++.++.++...+....+....+......+++|||+||++++|+++|+++|+.||.|++|+|+.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999999988888777777666666677889999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 006282 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 425 (652)
Q Consensus 346 ~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (652)
|.+|.++|||||+|.+.++|.+|+.+|||+.++|++|+|.++.+++.+...++.++.+..+.... .+... +.++
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~--~~~~~----p~~~ 393 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQ--LPMGS----PMGG 393 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccC--CCCCC----CCCC
Confidence 99999999999999999999999999999999999999999999999999888887763321111 11000 1110
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006282 426 GLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQM 504 (652)
Q Consensus 426 ~~~~~~~~~~~~~~~~pp~~-~~~~~~~~~p~~~p~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (652)
.++++.++++.+.+++++++ +|+..++ ++++++|+.+.++.++.+ +.++.+++.. ..+..
T Consensus 394 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~-----------~~~~~~~~~~~~p~~~~~-------~~~~~~~~~~-~~~~~ 454 (562)
T TIGR01628 394 AMGQPPYYGQGPQQQFNGQPLGWPRMSM-----------MPTPMGPGGPLRPNGLAP-------MNAVRAPSRN-AQNAA 454 (562)
T ss_pred cccCCCccCCCCcccCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCC-------CCcCCCCCcc-ccccc
Confidence 11122222222211111111 1110000 000000000000000000 0000000000 00000
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccchhhhhcCChHHHHHHhhhhchhhhh
Q 006282 505 PPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 583 (652)
Q Consensus 505 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 583 (652)
.+. .+.++|+++.. +. +.++ . +++++++.+.+.+.++++++||+++|++||++|||+|||+|+
T Consensus 455 ~~~~~~~~~~~p~~~--~~----------~~~~---~-~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~ 518 (562)
T TIGR01628 455 QKPPMQPVMYPPNYQ--SL----------PLSQ---D-LPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLFPLVE 518 (562)
T ss_pred ccccCCCcCCCcccc--CC----------CCCc---c-cccccCCccccccchhHHHHHhhCCHHHHHHHHHHHhHHHHH
Confidence 000 00112222100 00 0000 0 111111223344567899999999999999999999999999
Q ss_pred hccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHH
Q 006282 584 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 627 (652)
Q Consensus 584 ~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~ 627 (652)
+++|++||||||||||||++||||||||+|+|++||+||++||+
T Consensus 519 ~~~~~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 519 AIEPALAAKITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred hhChhhcCcceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999994
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-61 Score=499.18 Aligned_cols=360 Identities=65% Similarity=1.015 Sum_probs=343.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
.+|||| +++||++|+++|+.+|+|++||||||. | |+|||||+|.+++||++||+++|+..++|++|||||+++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 689999 899999999999999999999999998 7 9999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeee
Q 006282 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (652)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~ 189 (652)
++. |||+||++++|.++|+++|+.||+|++|++.++.+| ++|| ||+|+++++|++|++.+||..+.++.++
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 887 999999999999999999999999999999999999 9999 9999999999999999999999999999
Q ss_pred ecccccchhhHHHh--hccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHH
Q 006282 190 VGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267 (652)
Q Consensus 190 v~~~~~~~~~~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~ 267 (652)
|+.+.++.++.... .....++++++|++.+.+++.|.++|+.+|.|.++.++.+..|++++|+||+|.+.++|..|++
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 99999887765322 3467789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q 006282 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347 (652)
Q Consensus 268 ~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~ 347 (652)
.+++..+.+..++|.+++++.++...+...++.............+|||+|++..++++.|++.|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999998888888888888899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHHHHHHHhhhcC
Q 006282 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 404 (652)
Q Consensus 348 ~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~~~~~~~~~ 404 (652)
.|+++||+||+|.+.++|.+|+..+|+..+.+++++|.++++++.+..+++..+++.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhccee
Confidence 999999999999999999999999999999999999999999999988887776654
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.2e-49 Score=430.36 Aligned_cols=348 Identities=20% Similarity=0.248 Sum_probs=279.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc--CCcccCCceeEeec
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL--NFTPLNNKSIRIMY 105 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l--n~~~i~G~~i~i~~ 105 (652)
++++|||+|||+++||++|+++|+.||+|.+|+++++ +|||||+|.+.++|++|++.+ ++..|.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999864 369999999999999999964 67889999999999
Q ss_pred ccCCccccc----------CCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 006282 106 SHRDPSIRK----------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 175 (652)
Q Consensus 106 s~~~~~~~~----------~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai 175 (652)
+......+. +...+|+|.||+.++++++|+++|+.||.|.+|++.++. .+++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 975432211 123368999999999999999999999999999998753 2479999999999999999
Q ss_pred HHhcCceecC--eeeeecccccch--------------------hh-----------HHH--------------------
Q 006282 176 DKLNGMLIND--KQVFVGHFLRKQ--------------------ER-----------ETV-------------------- 202 (652)
Q Consensus 176 ~~lng~~l~g--~~~~v~~~~~~~--------------------~~-----------~~~-------------------- 202 (652)
+.|||..+.+ +.+.|.+..... ++ ...
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999865 355555433100 00 000
Q ss_pred --------------------------------------hhccCcceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeC
Q 006282 203 --------------------------------------AIKTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRD 243 (652)
Q Consensus 203 --------------------------------------~~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~ 243 (652)
......++|||+||+. .+++++|+++|+.||.|.+++++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011346899999997 6999999999999999999999986
Q ss_pred CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHH-------Hh--HHHHHhhhhc---------
Q 006282 244 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE-------LK--GQFEQAMKET--------- 305 (652)
Q Consensus 244 ~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~-------~~--~~~~~~~~~~--------- 305 (652)
. +|||||+|.+.++|..|+..|++..+.|+.|.|.++......... .. ..+.......
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3 579999999999999999999999999999999987553211000 00 0000000000
Q ss_pred -ccccccceeeecCCCCCCCHHHHHHHhhhcCC--eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee-
Q 006282 306 -VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP- 381 (652)
Q Consensus 306 -~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~--I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~- 381 (652)
....++.+|||+|||.++++++|+++|+.||. |+.++++.+.++ ++|+|||+|.+.++|.+|+..|||..|.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 01134678999999999999999999999998 899998866544 5899999999999999999999999999885
Q ss_pred -----EEEEeccc
Q 006282 382 -----LYVAVAQR 389 (652)
Q Consensus 382 -----l~v~~~~~ 389 (652)
|+|+++++
T Consensus 467 ~~~~~lkv~fs~~ 479 (481)
T TIGR01649 467 SAPYHLKVSFSTS 479 (481)
T ss_pred CccceEEEEeccC
Confidence 99998875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.1e-44 Score=378.10 Aligned_cols=340 Identities=25% Similarity=0.431 Sum_probs=234.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
+.++|||+|||.++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.+||++|++.||+..|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCe
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~ 186 (652)
.... .....+|||+|||.++++++|+++|+.||.|..+++..+ ..+.++|||||+|.+.++|.+|++.|||..+.++
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5432 223458999999999999999999999999999999988 4778999999999999999999999999988774
Q ss_pred --eeeecccccchhhHHHhhccCcce-----EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCH
Q 006282 187 --QVFVGHFLRKQERETVAIKTKFNN-----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259 (652)
Q Consensus 187 --~~~v~~~~~~~~~~~~~~~~~~~~-----l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~ 259 (652)
.+.+.+.................. .....++..... ...+.+..... ........+......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 228 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHAAA----RFRPSAGDFTAVLAH 228 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCccc----ccccCcchhhhhhhh
Confidence 455655443221110000000000 000000000000 00000000000 000000000000000
Q ss_pred HHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCee
Q 006282 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 339 (652)
Q Consensus 260 ~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~ 339 (652)
. ....... ................ ................+.+|||+|||+++++++|+++|++||.|+
T Consensus 229 ~--------~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 229 Q--------QQQHAVA--QQHAAQRASPPATDGQ-TAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred h--------hhhcccc--cccccccCCCcccccc-ccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 0 0000000 0000000000000000 000000001111123456899999999999999999999999999
Q ss_pred EEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHH
Q 006282 340 SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (652)
Q Consensus 340 ~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 391 (652)
+|+|++|. +|.+||||||+|.+.++|.+|+..|||..|+|+.|.|.|+..+.
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999997 89999999999999999999999999999999999999998764
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.9e-40 Score=368.42 Aligned_cols=266 Identities=37% Similarity=0.645 Sum_probs=238.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
..+|||+|||.++++++|+++|+.||.|.+|+|.+|. +++++|||||.|.+.++|++|++++|+..+.|+.|+|.+...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4679999999999999999999999999999999984 678999999999999999999999999999999999976554
Q ss_pred Cccc---ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceec-
Q 006282 109 DPSI---RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN- 184 (652)
Q Consensus 109 ~~~~---~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~- 184 (652)
.... ......+|||+||+.++++++|+++|+.||.|.++++..+.+|.++|||||.|.+.++|.+|++.+++..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 3222 334456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CeeeeecccccchhhHHHh------------hccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcc
Q 006282 185 ---DKQVFVGHFLRKQERETVA------------IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 249 (652)
Q Consensus 185 ---g~~~~v~~~~~~~~~~~~~------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~ 249 (652)
++.+.+.+...+.++.... .....++|||+||+.++++++|+++|+.||.|.++.++.+.+|.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 9999998877665542211 1235578999999999999999999999999999999999999999
Q ss_pred eeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHh
Q 006282 250 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 295 (652)
Q Consensus 250 g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 295 (652)
|||||+|.+.++|.+|+..+|+..+.|+.|+|.++..+..+...+.
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~ 372 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQ 372 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHH
Confidence 9999999999999999999999999999999999988876655443
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=308.33 Aligned_cols=313 Identities=31% Similarity=0.490 Sum_probs=237.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
.....+.|.|.-||..+|++||+.+|..+|+|.+++++||+.++.|+||+||+|.+++||++|+.+||+..+..|.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCcee
Q 006282 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l 183 (652)
++....+. -...+|+|.+||+.++.++|.++|+.||.|..-+|..| .+|.++|.|||.|...++|++||+.+||..-
T Consensus 117 yARPSs~~--Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 117 YARPSSDS--IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred eccCChhh--hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 88765443 34568999999999999999999999999988888888 6899999999999999999999999999876
Q ss_pred cCe--eeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhcc----C-CCeeEEEEeeCCCCCcceeEEEee
Q 006282 184 NDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE----Y-GTITSAVVMRDGDGKSKCFGFVNF 256 (652)
Q Consensus 184 ~g~--~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~----~-G~v~~~~i~~~~~g~~~g~~fV~f 256 (652)
.|. .|.|.+....+ ...+..-|..+|.. | |.+..... .|-+-+.
T Consensus 195 ~g~tepItVKFannPs--------------------q~t~~a~ls~ly~sp~rr~~Gp~hh~~~---------r~r~~~~ 245 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPS--------------------QKTNQALLSQLYQSPARRYGGPMHHQAQ---------RFRLDNL 245 (360)
T ss_pred CCCCCCeEEEecCCcc--------------------cccchhhhHHhhcCccccCCCcccchhh---------hhccccc
Confidence 553 34444332221 11122223333321 1 11111000 0000000
Q ss_pred CCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcC
Q 006282 257 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 336 (652)
Q Consensus 257 ~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG 336 (652)
... ..++..+....+++-.-.+...- ......+.||||-||..+.+|.-|..+|.+||
T Consensus 246 ~~~---~~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNLspd~de~~LWQlFgpFG 303 (360)
T KOG0145|consen 246 LNP---HAAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNLSPDADESILWQLFGPFG 303 (360)
T ss_pred cch---hhhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence 111 11111112222221111111100 01122478999999999999999999999999
Q ss_pred CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 337 TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 337 ~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.|+.|+|++|- ++++||||||.+.+.++|..|+..|||..+++|.|.|.|...+
T Consensus 304 Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999996 5899999999999999999999999999999999999998755
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=315.05 Aligned_cols=283 Identities=26% Similarity=0.380 Sum_probs=237.4
Q ss_pred eCCHHHHHHHHhhcCCcccCCceeEeecccCCc--------ccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEE
Q 006282 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDP--------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149 (652)
Q Consensus 78 F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~~--------~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v 149 (652)
..+.++|.+||.+- .|..|.|.-.+++- .......+.|||+.||.++.|++|..+|.+.|.|.++++
T Consensus 41 ~~~~eaal~al~E~-----tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL 115 (506)
T KOG0117|consen 41 VQSEEAALKALLER-----TGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL 115 (506)
T ss_pred cccHHHHHHHHHHh-----cCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEE
Confidence 34477788887754 35566665444331 112234557999999999999999999999999999999
Q ss_pred eeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCcee-cCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHH
Q 006282 150 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227 (652)
Q Consensus 150 ~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l-~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~ 227 (652)
++| .+|.++|||||+|.+.++|.+||+.+|++.| .|+.|.|.. +..+++|||+|+|+++++++|.+
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~------------Svan~RLFiG~IPK~k~keeIle 183 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV------------SVANCRLFIGNIPKTKKKEEILE 183 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE------------eeecceeEeccCCccccHHHHHH
Confidence 999 7999999999999999999999999999877 567776644 34568899999999999999999
Q ss_pred HhccCCC-eeEEEEeeC--CCCCcceeEEEeeCCHHHHHHHHHHHC--CCccCCceEEEEccccchHHHHHHhHHHHHhh
Q 006282 228 IFGEYGT-ITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEALN--GKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302 (652)
Q Consensus 228 ~F~~~G~-v~~~~i~~~--~~g~~~g~~fV~f~~~~~A~~Ai~~l~--~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~ 302 (652)
.+++.++ |.+|.+..+ +..++||||||+|.++.+|..|...|- ...+.|..+.|.||....+...+.-.
T Consensus 184 e~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms------ 257 (506)
T KOG0117|consen 184 EMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS------ 257 (506)
T ss_pred HHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh------
Confidence 9999985 777777665 457899999999999999999988774 34578999999999887665443211
Q ss_pred hhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeE
Q 006282 303 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382 (652)
Q Consensus 303 ~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l 382 (652)
.-..|||+||+.++|+|.|+++|+.||.|+.|+.++| ||||.|.++++|.+|++.+||+.|+|..|
T Consensus 258 -------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 258 -------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred -------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceE
Confidence 1236999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred EEEecccHHHHHHHH
Q 006282 383 YVAVAQRKEERRARL 397 (652)
Q Consensus 383 ~v~~~~~~~~r~~~~ 397 (652)
.|.+|++.+.++...
T Consensus 324 EvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 324 EVTLAKPVDKKKKER 338 (506)
T ss_pred EEEecCChhhhccch
Confidence 999999988776543
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=9.2e-40 Score=352.74 Aligned_cols=297 Identities=21% Similarity=0.343 Sum_probs=243.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC-CceeEee
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN-NKSIRIM 104 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~-G~~i~i~ 104 (652)
+...++|||+|||++++|++|+++|++||+|.+|+|++| .+++|+|||||+|.+.++|++|++.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 455799999999999999999999999999999999999 88999999999999999999999999998885 7888887
Q ss_pred cccCCcccccCCCcceeecCCCccccHHHHHhhhccCCC-eeEEEEeeC--CCCCcccEEEEEEcCHHHHHHHHHHhcC-
Q 006282 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKLNG- 180 (652)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~-I~~~~v~~~--~~g~skG~afV~F~t~e~A~~Ai~~lng- 180 (652)
++.. ..+|||+|||.++++++|.+.|+.++. +.++.+... ..++++|||||+|.+.++|..|+++++.
T Consensus 134 ~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 134 ISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 7643 468999999999999999999999873 555544433 3567899999999999999999998853
Q ss_pred -ceecCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccC--CCeeEEEEeeCCCCCcceeEEEeeC
Q 006282 181 -MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRDGDGKSKCFGFVNFE 257 (652)
Q Consensus 181 -~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~g~~~g~~fV~f~ 257 (652)
..++++.|.|.+..+...... ......++|||+||+.++++++|+++|+.| |.|.++.+++ +||||+|+
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~ 277 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFE 277 (578)
T ss_pred ceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeC
Confidence 467899999998876543322 122345789999999999999999999999 9999998764 49999999
Q ss_pred CHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHH-h----HH-----HHHhhhhcccccccceeeecCCCCCCCHHH
Q 006282 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-K----GQ-----FEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327 (652)
Q Consensus 258 ~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~-~----~~-----~~~~~~~~~~~~~~~~l~V~nlp~~~te~~ 327 (652)
+.++|.+|++.||+..|.|+.|.|.++.......... . .. .+.......-.....++++.|+++..+++-
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~ 357 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAP 357 (578)
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccc
Confidence 9999999999999999999999999997653321100 0 00 000000011123467899999999999999
Q ss_pred HHHHhhhcCCee
Q 006282 328 LKELFSEFGTIT 339 (652)
Q Consensus 328 L~~~F~~fG~I~ 339 (652)
+.++|..+|.|.
T Consensus 358 ~~~~f~~~g~~~ 369 (578)
T TIGR01648 358 SLHFPRMPGPIR 369 (578)
T ss_pred hhhccccCcccc
Confidence 999999998744
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=9.2e-38 Score=337.24 Aligned_cols=281 Identities=24% Similarity=0.349 Sum_probs=227.9
Q ss_pred CHHHHHHHHhhcCCcccCCceeEeecccCCcc---cccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCC
Q 006282 80 NPADAARALDVLNFTPLNNKSIRIMYSHRDPS---IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 156 (652)
Q Consensus 80 ~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~~~---~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~ 156 (652)
..++|.+||.++++..+........+....+. .......+|||+|||.++++++|+++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 46789999988886655444333333322111 112234689999999999999999999999999999999999999
Q ss_pred cccEEEEEEcCHHHHHHHHHHhcCceec-CeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCC-
Q 006282 157 SKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT- 234 (652)
Q Consensus 157 skG~afV~F~t~e~A~~Ai~~lng~~l~-g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~- 234 (652)
++|||||+|.+.++|.+|++.+|+..+. ++.+.+... ...++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 666555332 34578999999999999999999999964
Q ss_pred eeEEEEeeC--CCCCcceeEEEeeCCHHHHHHHHHHHCC--CccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccc
Q 006282 235 ITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310 (652)
Q Consensus 235 v~~~~i~~~--~~g~~~g~~fV~f~~~~~A~~Ai~~l~~--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (652)
+.++.+... ..++++|||||+|+++++|..|++.|+. ..+.++.|.|.|+..+.+...+ ....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------VMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------cccc
Confidence 444444332 3568899999999999999999988864 3578999999998765432111 1122
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~f--G~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..+|||+||++++++++|+++|+.| |+|++|++++ +||||+|.+.++|.+|++.|||..|+|+.|.|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4579999999999999999999999 9999998764 499999999999999999999999999999999998
Q ss_pred cHHH
Q 006282 389 RKEE 392 (652)
Q Consensus 389 ~~~~ 392 (652)
+++.
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7643
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=309.75 Aligned_cols=253 Identities=25% Similarity=0.421 Sum_probs=230.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc-CCce
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-NNKS 100 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i-~G~~ 100 (652)
.+..+..++.||||.||.++.|++|..||..+|+|.++|++.|+.++.++|||||.|.+.++|++|+++||+.+| .||.
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 445567899999999999999999999999999999999999999999999999999999999999999999988 5999
Q ss_pred eEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCC-CeeEEEEeeC--CCCCcccEEEEEEcCHHHHHHHHHH
Q 006282 101 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDK 177 (652)
Q Consensus 101 i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I~~~~v~~~--~~g~skG~afV~F~t~e~A~~Ai~~ 177 (652)
|.|..|.. +++|||+|||++.++++|.+.|++.+ .|+.+.+..+ ...+++|||||+|.+...|.-|..+
T Consensus 156 igvc~Sva--------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 156 LGVCVSVA--------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred eEEEEeee--------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 99988775 36899999999999999999999988 5788888877 3567999999999999999999998
Q ss_pred hc--CceecCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEe
Q 006282 178 LN--GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255 (652)
Q Consensus 178 ln--g~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~ 255 (652)
|- ...++|..+.|.|+.+..+.... .......|||+||+.++|+|.|+++|+.||.|+.|+.++| ||||.
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVH 299 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVH 299 (506)
T ss_pred ccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEe
Confidence 73 36789999999999988776654 4566678999999999999999999999999999998877 99999
Q ss_pred eCCHHHHHHHHHHHCCCccCCceEEEEccccchHH
Q 006282 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290 (652)
Q Consensus 256 f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~ 290 (652)
|.+.++|.+|++.+|++.++|..|.|..|+...++
T Consensus 300 f~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred ecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999999999999999999876544
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=313.98 Aligned_cols=343 Identities=27% Similarity=0.438 Sum_probs=276.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
.||||++||++++.++|.++|+.+|+|..+-|+.++.+..++||+||.|.-.+|+++|+...++..|.|+.|+|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred cccc------------------------cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEE
Q 006282 110 PSIR------------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 165 (652)
Q Consensus 110 ~~~~------------------------~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F 165 (652)
.... ......|.|+|||+.+...+|..+|+.||.|.++.|.....|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2211 1124569999999999999999999999999999999888888889999999
Q ss_pred cCHHHHHHHHHHhcCceecCeeeeecccccchhhHHHh------------------------------------------
Q 006282 166 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA------------------------------------------ 203 (652)
Q Consensus 166 ~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~------------------------------------------ 203 (652)
....+|..|++.+|+..|.|+.|.|.|+.++..-....
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999886432111000
Q ss_pred h--------------------c----------------------cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 006282 204 I--------------------K----------------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 241 (652)
Q Consensus 204 ~--------------------~----------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~ 241 (652)
. . ....+|||+|||+++++++|.+.|++||.|..+.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0 000349999999999999999999999999999988
Q ss_pred eC-CCCCcceeEEEeeCCHHHHHHHHHHHC-----C-CccCCceEEEEccccchHHHHHH--------------------
Q 006282 242 RD-GDGKSKCFGFVNFENADDAAKAVEALN-----G-KKFDDREWYVGKAQKKSEREQEL-------------------- 294 (652)
Q Consensus 242 ~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~-----~-~~~~g~~l~v~~a~~~~~~~~~~-------------------- 294 (652)
.+ .+|.++|+|||.|.+..+|..||.... + ..+.||.|.|..+-.+.+-....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 77 579999999999999999999998762 2 55789999998886543322210
Q ss_pred -------------------hHHHHHh----hhhcccccccceeeecCCCCCCCHHHHHHHhhh----c-CCee-EEEEec
Q 006282 295 -------------------KGQFEQA----MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE----F-GTIT-SCKVMR 345 (652)
Q Consensus 295 -------------------~~~~~~~----~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~----f-G~I~-~v~i~~ 345 (652)
+..+... .++..-....+.|.|.|||..+++..|+.+... | +.+. .|+.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 0011100 011111234566999999999999999988753 3 3332 234443
Q ss_pred CC----CCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 346 DP----SGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 346 ~~----~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
.. .+.|.||+|+.|..++.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 32 5789999999999999999999855
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-37 Score=285.05 Aligned_cols=236 Identities=25% Similarity=0.459 Sum_probs=196.0
Q ss_pred CCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeeccccc
Q 006282 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (652)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~ 195 (652)
.-++|||+||+.++||+-|..+|+..|.|.+||++.|+- .|.+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------------------~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------------------KVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------------------------ccccccC
Confidence 346899999999999999999999999999999998621 1222211
Q ss_pred chhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCcc
Q 006282 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 274 (652)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~ 274 (652)
...++. ......-.+||+.|...++.++|++.|.+||+|.+++|++| .++++|||+||.|.+.++|++||..|+|..+
T Consensus 51 p~nQsk-~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PGNQSK-PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred cccCCC-CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 111110 11122345999999999999999999999999999999999 6799999999999999999999999999999
Q ss_pred CCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccE
Q 006282 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354 (652)
Q Consensus 275 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~ 354 (652)
.+|.|+-+|+.+|......-...+++... ..+...|+|||+||+.-++|++||+.|++||.|.+|+|+++ +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~N--Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYN--QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhc--cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 99999999999887332222222332222 23456899999999999999999999999999999999998 889
Q ss_pred EEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHH
Q 006282 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (652)
Q Consensus 355 afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r 393 (652)
+||.|.+.|.|.+||..+||..|+|..+++.|.+.....
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999999876543
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1e-35 Score=321.39 Aligned_cols=168 Identities=23% Similarity=0.496 Sum_probs=153.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
..++|||+||+++++|++|+++|+.||+|.+|++++|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCccc---------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHH
Q 006282 108 RDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177 (652)
Q Consensus 108 ~~~~~---------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~ 177 (652)
..+.. ......+|||+||+.++++++|+++|+.||.|.+|++..| ..+.++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 1123468999999999999999999999999999999998 4678999999999999999999999
Q ss_pred hcCceecCeeeeeccccc
Q 006282 178 LNGMLINDKQVFVGHFLR 195 (652)
Q Consensus 178 lng~~l~g~~~~v~~~~~ 195 (652)
+|+..++|+.|.|.+...
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999988764
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=299.89 Aligned_cols=362 Identities=25% Similarity=0.371 Sum_probs=245.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc-cCC--
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP-LNN-- 98 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~-i~G-- 98 (652)
++.+......|||+-+|..++|+||+++|++||.|.+|.|.+|+.|+.|+|||||.|.+.++|.+|+..|++.. |-|
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 34444567899999999999999999999999999999999999999999999999999999999999998654 455
Q ss_pred ceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 006282 99 KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178 (652)
Q Consensus 99 ~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 178 (652)
.+|.|.++..+.. +-....+|||+-|++.++|++++++|++||.|.+|.|.+|..+.+||||||.|.+.|.|..||+.+
T Consensus 107 ~pvqvk~Ad~E~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 107 HPVQVKYADGERE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cceeecccchhhh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 6788877765432 224467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce-ecC--eeeeecccccchhhHHHhhc-------------cCcce------------------------EEecCCCC
Q 006282 179 NGML-IND--KQVFVGHFLRKQERETVAIK-------------TKFNN------------------------VFVKNLDE 218 (652)
Q Consensus 179 ng~~-l~g--~~~~v~~~~~~~~~~~~~~~-------------~~~~~------------------------l~V~nlp~ 218 (652)
|+.. +.| ..+.|.+....+.+...... ..+.+ .-+++++.
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~ 265 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPP 265 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccC
Confidence 9854 454 46778877765544333210 01111 00111110
Q ss_pred --CCCHHHHHHH-------------------------hccCCCeeE----------------------------------
Q 006282 219 --STTDEDLKKI-------------------------FGEYGTITS---------------------------------- 237 (652)
Q Consensus 219 --~~t~~~l~~~-------------------------F~~~G~v~~---------------------------------- 237 (652)
......+... .+.-|...+
T Consensus 266 L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~ 345 (510)
T KOG0144|consen 266 LGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANY 345 (510)
T ss_pred CCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhc
Confidence 0000000000 000000000
Q ss_pred --------EEEe---eCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcc
Q 006282 238 --------AVVM---RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 306 (652)
Q Consensus 238 --------~~i~---~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 306 (652)
..+. ....+...-.+...|. -..+..-..++... .++...+...-..................
T Consensus 346 n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~-~~~~~~~tQa~q~~-----~q~a~~a~~~l~~q~~~~qq~~~~~~~q~ 419 (510)
T KOG0144|consen 346 NLAGGMAGAGTTSPVAASLANLQQIGLTPFA-GAAALDHTQAMQQY-----AQSANLAAPGLVGQQATTQQAQMVGNGQV 419 (510)
T ss_pred ccccccccccccCcccccccccccccCCChh-hhhhHhHHHhhhHh-----hhhhhhcccchhhhhHhhhhhhcccCccc
Confidence 0000 0000000001122221 00011111111110 01111111100011111111111122334
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
+...|.+|||.+||-+.-+.+|-..|.+||.|.+.+++.|+ +|.|++|+||.|++..+|.+||..|||+.+++|+|+|.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 56678999999999999999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
+.+.+
T Consensus 500 lk~~~ 504 (510)
T KOG0144|consen 500 LKRDR 504 (510)
T ss_pred eeecc
Confidence 88755
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.2e-35 Score=321.27 Aligned_cols=342 Identities=22% Similarity=0.291 Sum_probs=233.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....++|||+|||.++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|.+||. |++..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred ccCCccc----------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHH
Q 006282 106 SHRDPSI----------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174 (652)
Q Consensus 106 s~~~~~~----------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~A 174 (652)
+...... ......+|||+||+.++++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 7543211 01225789999999999999999999999999999999984 568999999999999999999
Q ss_pred HHHhcCceecCeeeeecccccchhhHHHhhc-cCcce-EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeE
Q 006282 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIK-TKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252 (652)
Q Consensus 175 i~~lng~~l~g~~~~v~~~~~~~~~~~~~~~-~~~~~-l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~ 252 (652)
++.|||..+.|+.|.|.+............. ..... -..+..........+...+...+......+. ...+ ....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~ 321 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP-GTGS--KIAL 321 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC-Cccc--hhhh
Confidence 9999999999999999997643222111000 00000 0000000111222222222222211000000 0000 0000
Q ss_pred EEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHH-hhhhcccccccceeeecCCCCCCC-------
Q 006282 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ-AMKETVDKFQGLNLYIKNLGDSID------- 324 (652)
Q Consensus 253 fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t------- 324 (652)
+..+ .........+....+... ....... ............+|+|.||-...+
T Consensus 322 ~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 322 MQKL-------------QRDGIIDPNIPSRYATGA------LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred hccc-------------cccccccccccccccccc------cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 0000 000000000000000000 0000000 000000123567899999955444
Q ss_pred ---HHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHH
Q 006282 325 ---DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (652)
Q Consensus 325 ---e~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r 393 (652)
.++|++.|++||.|++|.|... .+.|++||.|.+.++|.+|++.|||+.|+|+.|.+.+.....-.
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~ 451 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYD 451 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHH
Confidence 3689999999999999998743 35799999999999999999999999999999999998876543
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.7e-35 Score=320.68 Aligned_cols=262 Identities=23% Similarity=0.344 Sum_probs=209.9
Q ss_pred CcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHh--cCceecCeeeeecccc
Q 006282 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL--NGMLINDKQVFVGHFL 194 (652)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l--ng~~l~g~~~~v~~~~ 194 (652)
+..|||+|||.++++++|+++|+.||.|.+|++++ ++|||||+|.+.++|.+|++.+ ++..+.|+.|.|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 46799999999999999999999999999999986 5689999999999999999864 7889999999999886
Q ss_pred cchhhHHH------hhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHH
Q 006282 195 RKQERETV------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268 (652)
Q Consensus 195 ~~~~~~~~------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~ 268 (652)
........ .......+|+|+||++.+++++|+++|+.||.|.++.++++.. +++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54311111 0112345799999999999999999999999999999987632 46899999999999999999
Q ss_pred HCCCccCC--ceEEEEccccch--------------------HHHHHHhHHHHHhhh-----------------------
Q 006282 269 LNGKKFDD--REWYVGKAQKKS--------------------EREQELKGQFEQAMK----------------------- 303 (652)
Q Consensus 269 l~~~~~~g--~~l~v~~a~~~~--------------------~~~~~~~~~~~~~~~----------------------- 303 (652)
|||..+.+ +.|.|.++.... +++..+.........
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999965 467776654311 000000000000000
Q ss_pred ----------------------------------hcccccccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCC
Q 006282 304 ----------------------------------ETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPS 348 (652)
Q Consensus 304 ----------------------------------~~~~~~~~~~l~V~nlp~-~~te~~L~~~F~~fG~I~~v~i~~~~~ 348 (652)
.......+++|||+||++ .+|+++|+++|+.||.|.+|+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 000123567999999997 6999999999999999999999987
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 349 g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.+|||||+|.+.++|.+|+..|||..|.|+.|+|.+++..
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3689999999999999999999999999999999987643
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-34 Score=265.32 Aligned_cols=220 Identities=28% Similarity=0.511 Sum_probs=192.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
..-++|||+||+++|||+-|..||+++|+|.+++|+.| .++|+|.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 34579999999999999999999999999999999887 4556665
Q ss_pred cCCccccc---CCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 107 HRDPSIRK---SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 107 ~~~~~~~~---~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
.......+ +..-.+||+.|...++.++|++.|..||+|.+++|++| .++++||||||.|.+.++|++||..|||.-
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 54311111 11335999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred ecCeeeeecccccchhhHHH----------hhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeE
Q 006282 183 INDKQVFVGHFLRKQERETV----------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252 (652)
Q Consensus 183 l~g~~~~v~~~~~~~~~~~~----------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~ 252 (652)
|.+|.|+..|+.++...... ..+..+++|||+|++.-+++++|++.|+.||.|.+|++.++ +||+
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYa 203 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYA 203 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceE
Confidence 99999999999877632111 12457789999999999999999999999999999999988 7899
Q ss_pred EEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 253 fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
||.|++.|+|.+||..+|+..+.|..+++.|.+.
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 9999999999999999999999999999988754
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.9e-32 Score=304.54 Aligned_cols=254 Identities=23% Similarity=0.372 Sum_probs=206.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhcc------------CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQV------------GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~------------G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~ 93 (652)
....++|||||||+++|+++|+++|+.+ +.|.++.+ .+++|||||+|.+.++|..||+ ||+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4467899999999999999999999975 34555544 3456899999999999999996 999
Q ss_pred cccCCceeEeecccCCc---------------------------ccccCCCcceeecCCCccccHHHHHhhhccCCCeeE
Q 006282 94 TPLNNKSIRIMYSHRDP---------------------------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146 (652)
Q Consensus 94 ~~i~G~~i~i~~s~~~~---------------------------~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~ 146 (652)
..|.|+.|+|.+.+... ........+|||+|||..+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 99999999997544221 001123467999999999999999999999999999
Q ss_pred EEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhhHH----------------H------h
Q 006282 147 CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET----------------V------A 203 (652)
Q Consensus 147 ~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~----------------~------~ 203 (652)
|.++.+ .+|.++|||||+|.+.++|..|++.|||..+.|+.|.|.+......... . .
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQI 404 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccc
Confidence 999998 5889999999999999999999999999999999999977642211000 0 0
Q ss_pred hccCcceEEecCCCCCC----------CHHHHHHHhccCCCeeEEEEeeCC----CCCcceeEEEeeCCHHHHHHHHHHH
Q 006282 204 IKTKFNNVFVKNLDEST----------TDEDLKKIFGEYGTITSAVVMRDG----DGKSKCFGFVNFENADDAAKAVEAL 269 (652)
Q Consensus 204 ~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~i~~~~----~g~~~g~~fV~f~~~~~A~~Ai~~l 269 (652)
.......|+|.|+.... ..++|+++|++||.|.+|.|.++. .+.+.|++||+|.+.++|.+|+..|
T Consensus 405 ~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 405 GGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred cCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 01234568899986321 236799999999999999998752 3556799999999999999999999
Q ss_pred CCCccCCceEEEEcccc
Q 006282 270 NGKKFDDREWYVGKAQK 286 (652)
Q Consensus 270 ~~~~~~g~~l~v~~a~~ 286 (652)
||..|.|+.|.+.+...
T Consensus 485 nGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 485 NGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCCEECCeEEEEEEeCH
Confidence 99999999999988644
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.4e-33 Score=280.61 Aligned_cols=276 Identities=30% Similarity=0.471 Sum_probs=229.3
Q ss_pred cceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006282 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 118 ~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
.+|||++||++++.++|.++|+.+|.|..|.++++ ..+.++|||||.|+-.|++.+|+...++..+.|+.+.|.....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999999 46689999999999999999999999999999999999888765
Q ss_pred hhhHHHhh-----------c---------cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEee
Q 006282 197 QERETVAI-----------K---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 256 (652)
Q Consensus 197 ~~~~~~~~-----------~---------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f 256 (652)
........ + ...-.|.|+|||+.+.+++|+.+|+.||.|..|.|.+..+|+..|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43331110 0 013359999999999999999999999999999999999999899999999
Q ss_pred CCHHHHHHHHHHHCCCccCCceEEEEccccchHHHH-------HHhH---------------------------------
Q 006282 257 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-------ELKG--------------------------------- 296 (652)
Q Consensus 257 ~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~-------~~~~--------------------------------- 296 (652)
....+|..|++.+|+..|.||.+-|.||-.+...+. .++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999865532111 0000
Q ss_pred --HHH------Hhh------hh------------------cccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 006282 297 --QFE------QAM------KE------------------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 344 (652)
Q Consensus 297 --~~~------~~~------~~------------------~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~ 344 (652)
.++ ... .+ ..+...+.+|||+|||+++|+++|.++|+.||.|..+.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 000 000 00 0001124679999999999999999999999999999998
Q ss_pred cCC-CCCCccEEEEEeCCHHHHHHHHHHh-----cC-cEecCeeEEEEecccHHHH
Q 006282 345 RDP-SGISKGSGFVAFSTPEEASRALAEM-----NG-KMIVSKPLYVAVAQRKEER 393 (652)
Q Consensus 345 ~~~-~g~s~g~afV~F~s~~~A~~A~~~l-----ng-~~~~g~~l~v~~~~~~~~r 393 (652)
.++ +|+|+|+|||.|.+..+|.+||... .| ..++|+-|.|.++-.+.+-
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 776 8999999999999999999999865 24 7889999999999876543
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-32 Score=281.69 Aligned_cols=256 Identities=41% Similarity=0.659 Sum_probs=233.9
Q ss_pred ceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchh
Q 006282 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198 (652)
Q Consensus 119 ~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~ 198 (652)
.|+|+ +++++..|+++|+.+|.|+++++..|. + +-|||||.|.+.++|.+|+..+|...+.|+.+++.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57788 889999999999999999999999998 6 999999999999999999999999999999999999765443
Q ss_pred hHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCce
Q 006282 199 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 278 (652)
Q Consensus 199 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~ 278 (652)
. +||+||+++++..+|.++|+.||.|.+|++..+.+| ++|| ||+|++.++|.+|++.+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 3 999999999999999999999999999999999999 9999 99999999999999999999999999
Q ss_pred EEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEE
Q 006282 279 WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358 (652)
Q Consensus 279 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~ 358 (652)
++|.....+.++...... ....-+++||+|++..+++++|.++|+.||.|+++.++.+..|+++||+||.
T Consensus 145 i~vg~~~~~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999988877654432 1112357999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHHHHHHHhhh
Q 006282 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 402 (652)
Q Consensus 359 F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~~~~~~~ 402 (652)
|.+.++|.+|+..||+..+.++.++|.-+..+.++...+...+.
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~ 258 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE 258 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH
Confidence 99999999999999999999999999999997777766555433
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.5e-32 Score=301.55 Aligned_cols=270 Identities=18% Similarity=0.285 Sum_probs=208.8
Q ss_pred CCcceeecCCCccccHHHHHhhhccC------------CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCcee
Q 006282 116 GTGNIFIKNLDKSIDHKALHDTFSSF------------GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~Fs~f------------G~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l 183 (652)
...+|||+|||.++++++|+++|+.+ +.|..+.+ +..+|||||+|.+.++|..|+ .|+|..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45679999999999999999999975 23333433 236899999999999999999 6999999
Q ss_pred cCeeeeecccccchhhH-----------------------HHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEE
Q 006282 184 NDKQVFVGHFLRKQERE-----------------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240 (652)
Q Consensus 184 ~g~~~~v~~~~~~~~~~-----------------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i 240 (652)
.|+.|.|.......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999886443221000 0001123468999999999999999999999999999999
Q ss_pred eeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHH--------hHHHHHh--hhhccccc
Q 006282 241 MRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL--------KGQFEQA--MKETVDKF 309 (652)
Q Consensus 241 ~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~--------~~~~~~~--~~~~~~~~ 309 (652)
+++ .+|.++|||||+|.+.++|..|++.|++..+.|+.|.|.++.......... ....... ........
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 887 578999999999999999999999999999999999999985432110000 0000000 00011123
Q ss_pred ccceeeecCCCCC--C--------CHHHHHHHhhhcCCeeEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhcCc
Q 006282 310 QGLNLYIKNLGDS--I--------DDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGK 375 (652)
Q Consensus 310 ~~~~l~V~nlp~~--~--------te~~L~~~F~~fG~I~~v~i~~~~----~g~s~g~afV~F~s~~~A~~A~~~lng~ 375 (652)
...+|+|.|+... + ..++|+++|++||.|++|+|+++. .+.+.|++||+|.+.++|.+|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 4568999999532 1 136899999999999999998752 3566899999999999999999999999
Q ss_pred EecCeeEEEEecccHH
Q 006282 376 MIVSKPLYVAVAQRKE 391 (652)
Q Consensus 376 ~~~g~~l~v~~~~~~~ 391 (652)
.|+|+.|.|.|.....
T Consensus 488 ~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 488 KFNDRVVVAAFYGEDC 503 (509)
T ss_pred EECCeEEEEEEeCHHH
Confidence 9999999999987643
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.98 E-value=7.2e-32 Score=283.21 Aligned_cols=328 Identities=25% Similarity=0.400 Sum_probs=264.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.+..|||+|||+.++|++|..+| |||.|..++.|.+|..++++..+.|+.+.|..+.
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 46799999999999999999999 8999999999999999999999999999875443
Q ss_pred CCccc---------------------------------------------------------------------------
Q 006282 108 RDPSI--------------------------------------------------------------------------- 112 (652)
Q Consensus 108 ~~~~~--------------------------------------------------------------------------- 112 (652)
...+.
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 11000
Q ss_pred ------------------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHH
Q 006282 113 ------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174 (652)
Q Consensus 113 ------------------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~A 174 (652)
.......|+++|||..+..++|..+|..||.|..+.+. +.|. -++|+|.+..+|+.|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~A 437 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKA 437 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHH
Confidence 00011338999999999999999999999999888443 3333 589999999999999
Q ss_pred HHHhcCceecCeeeeecccccchhh-------------HH----------Hh---------------------hccCcce
Q 006282 175 IDKLNGMLINDKQVFVGHFLRKQER-------------ET----------VA---------------------IKTKFNN 210 (652)
Q Consensus 175 i~~lng~~l~g~~~~v~~~~~~~~~-------------~~----------~~---------------------~~~~~~~ 210 (652)
+..+....+....+++.|....... .. .. .....+.
T Consensus 438 frklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~ 517 (725)
T KOG0110|consen 438 FRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK 517 (725)
T ss_pred HHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh
Confidence 9999887776666666544311100 00 00 0011133
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCC----cceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK----SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 211 l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~----~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
|||+||.++.+.+++...|...|.|.++.|....++. |.|||||+|.+.++|..|++.|+|..+.|..|++..+..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999888765543 569999999999999999999999999999999999873
Q ss_pred chHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHH
Q 006282 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 365 (652)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A 365 (652)
+...... +.......+++|+|+|||+..+..+++++|..||.|.+|+|... ..+.++|||||.|-+..+|
T Consensus 598 k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 598 KPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 3222111 11112223789999999999999999999999999999999977 3566799999999999999
Q ss_pred HHHHHHhcCcEecCeeEEEEecccHHH
Q 006282 366 SRALAEMNGKMIVSKPLYVAVAQRKEE 392 (652)
Q Consensus 366 ~~A~~~lng~~~~g~~l~v~~~~~~~~ 392 (652)
.+|+..|.+..+.|++|.+.|+.....
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999998765
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=4.6e-30 Score=265.02 Aligned_cols=170 Identities=30% Similarity=0.524 Sum_probs=154.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
.....++|||+|||+++||++|+++|+.||+|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCcee
Q 006282 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l 183 (652)
|+..... .....+|||.|||.++++++|+++|+.||.|..|++..| .++.++|||||+|.+.++|.+||+.||+..+
T Consensus 183 ~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 183 YARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 9875432 223568999999999999999999999999999999998 4899999999999999999999999999988
Q ss_pred cC--eeeeecccccc
Q 006282 184 ND--KQVFVGHFLRK 196 (652)
Q Consensus 184 ~g--~~~~v~~~~~~ 196 (652)
.+ +.+.|.+....
T Consensus 261 ~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 261 EGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCceeEEEEECCcc
Confidence 76 56777765543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.5e-28 Score=252.12 Aligned_cols=169 Identities=31% Similarity=0.553 Sum_probs=153.1
Q ss_pred ccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEc
Q 006282 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283 (652)
Q Consensus 205 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~ 283 (652)
....++|||+|||+++++++|+++|+.||.|.+|.|++| .+++++|||||+|.+.++|.+|++.|++..+.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 356789999999999999999999999999999999988 5799999999999999999999999999999999999998
Q ss_pred cccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCH
Q 006282 284 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 362 (652)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~ 362 (652)
+....+ ....++|||+|||..+|+++|+++|++||+|++|+|++|. +|+++|||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754221 1124689999999999999999999999999999999886 899999999999999
Q ss_pred HHHHHHHHHhcCcEecC--eeEEEEecccHH
Q 006282 363 EEASRALAEMNGKMIVS--KPLYVAVAQRKE 391 (652)
Q Consensus 363 ~~A~~A~~~lng~~~~g--~~l~v~~~~~~~ 391 (652)
++|.+|++.||+..+.+ ++|.|.|+....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999875 789999998653
No 25
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=3.1e-30 Score=191.20 Aligned_cols=64 Identities=61% Similarity=0.944 Sum_probs=62.1
Q ss_pred ChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 006282 566 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 629 (652)
Q Consensus 566 ~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 629 (652)
+|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999864
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=234.05 Aligned_cols=239 Identities=19% Similarity=0.242 Sum_probs=201.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFS-QVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.....+++||.|+|+++...+|++||. ..|.|..|.++.|. .++++|||.|+|+++|.+++|++.||...++||+|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 344567899999999999999999995 67899999999995 5899999999999999999999999999999999999
Q ss_pred ecccCCccc----ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhc
Q 006282 104 MYSHRDPSI----RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179 (652)
Q Consensus 104 ~~s~~~~~~----~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ln 179 (652)
...+...-. ......+.|+.++....-+.-|...|+.-|.+..-.+..|.++.+++..+++|++.-.+..++.-++
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 765542211 1123457999999999999999999999998888888899999999999999999988888886655
Q ss_pred CceecCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCH
Q 006282 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259 (652)
Q Consensus 180 g~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~ 259 (652)
......+.+.+ + .......+||.||.+.+..+.|++.|.-.|.|.++.+..|+.|.++||+.++|+++
T Consensus 199 l~~~Flr~~h~-f-----------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 199 LSASFLRSLHI-F-----------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred chhhhhhhccC-C-----------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 54443333332 1 11234568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCccCC
Q 006282 260 DDAAKAVEALNGKKFDD 276 (652)
Q Consensus 260 ~~A~~Ai~~l~~~~~~g 276 (652)
-.|..||..+++.-+.+
T Consensus 267 veavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGLFD 283 (608)
T ss_pred HHHHHHHHhhccCCCcc
Confidence 99999998888654433
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.8e-28 Score=238.09 Aligned_cols=172 Identities=30% Similarity=0.576 Sum_probs=149.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCc-cCC--ceEEEE
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK-FDD--REWYVG 282 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~-~~g--~~l~v~ 282 (652)
+.-.+||+.+|+.|+|.||+++|++||.|.+|.+++| .++.++|||||.|.+.++|.+|+.+||... +.| ..+.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3456999999999999999999999999999999999 468999999999999999999999998765 444 466777
Q ss_pred ccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCH
Q 006282 283 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 362 (652)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~ 362 (652)
++....++. ....+|||+-|++.++|.+++++|++||.|++|.|++|..|.|||||||+|.+.
T Consensus 113 ~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 775544432 123469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEe-c--CeeEEEEecccHHHHHH
Q 006282 363 EEASRALAEMNGKMI-V--SKPLYVAVAQRKEERRA 395 (652)
Q Consensus 363 ~~A~~A~~~lng~~~-~--g~~l~v~~~~~~~~r~~ 395 (652)
+-|..||+.|||..- . ..+|.|+||..+.+|..
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 999999999999744 3 57999999997765553
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=6.3e-27 Score=253.39 Aligned_cols=178 Identities=24% Similarity=0.423 Sum_probs=153.0
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+||++++++++|+++|+.||.|.++.++.| .+|+++|||||+|.+.++|..|++.|++..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45678999999999999999999999999999999988 57999999999999999999999999999999999999865
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
............ ........++|||+||+.++++++|+++|+.||.|++|+|.+|. +|++||||||+|.+.+
T Consensus 185 ~~~p~a~~~~~~-------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIIDM-------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccccc-------ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 433211100000 00111234689999999999999999999999999999999986 6789999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+|.+|+..||+..++|+.|+|.++..+
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999988743
No 29
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.94 E-value=1.1e-27 Score=185.40 Aligned_cols=71 Identities=61% Similarity=0.915 Sum_probs=69.4
Q ss_pred ccchhhhhcCChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHH
Q 006282 556 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 626 (652)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l 626 (652)
+.+++.|+++++++||++|||+|||+|..++|++|+||||||||||++||++||+|+++|++||+||++||
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999997
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=6.7e-26 Score=240.10 Aligned_cols=170 Identities=31% Similarity=0.470 Sum_probs=151.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC--ceeEeec
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMY 105 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G--~~i~i~~ 105 (652)
..++|||+|||.++++++|+++|+.||.|..+++++|..++.++|||||+|.+.++|++|++.||+..+.| ++|+|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998877 5678877
Q ss_pred ccCCccc------------------c------------------------------------------------------
Q 006282 106 SHRDPSI------------------R------------------------------------------------------ 113 (652)
Q Consensus 106 s~~~~~~------------------~------------------------------------------------------ 113 (652)
+...... +
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6432100 0
Q ss_pred ------------------cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHH
Q 006282 114 ------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174 (652)
Q Consensus 114 ------------------~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~A 174 (652)
.....+|||+|||.++++++|+++|+.||.|.+|+|+.|. +|.++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0011259999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHhcCceecCeeeeecccccch
Q 006282 175 IDKLNGMLINDKQVFVGHFLRKQ 197 (652)
Q Consensus 175 i~~lng~~l~g~~~~v~~~~~~~ 197 (652)
++.|||..+.|+.|.|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999877654
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=219.41 Aligned_cols=348 Identities=20% Similarity=0.277 Sum_probs=259.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC--cccCCceeEe
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSIRI 103 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~--~~i~G~~i~i 103 (652)
..++..|++||||++++|++|.+++.+||+|..+...+.+. .||++|.+.++|...+..... -.+.|++|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 45789999999999999999999999999999999988654 699999999998874443222 2468899999
Q ss_pred ecccCCc------------------------c-----c--cc-------CCCcceeecCCCccccHHHHHhhhccCCCee
Q 006282 104 MYSHRDP------------------------S-----I--RK-------SGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145 (652)
Q Consensus 104 ~~s~~~~------------------------~-----~--~~-------~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~ 145 (652)
.|++... . . .. +..-.++|.++-+.++-+-|+.+|++||.|+
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 8875210 0 0 00 0112378899999999999999999999999
Q ss_pred EEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCe--eeeecccc---------cchhhHHH------------
Q 006282 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFL---------RKQERETV------------ 202 (652)
Q Consensus 146 ~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~--~~~v~~~~---------~~~~~~~~------------ 202 (652)
.|......++. .|+|+|.+.+.|..|...|+|..|.+- .+++.+.. ....|.-.
T Consensus 179 KIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~ 255 (492)
T KOG1190|consen 179 KIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPS 255 (492)
T ss_pred EEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccc
Confidence 98887754443 589999999999999999988776432 33332221 00000000
Q ss_pred -----------------------------------hh-ccCcceEEecCCC-CCCCHHHHHHHhccCCCeeEEEEeeCCC
Q 006282 203 -----------------------------------AI-KTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD 245 (652)
Q Consensus 203 -----------------------------------~~-~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~~~i~~~~~ 245 (652)
.. ...+..|.|.||. ..+|.+.|..+|+-||.|..|+|+.++.
T Consensus 256 l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 256 LDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred cchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 00 0013557888886 5689999999999999999999997743
Q ss_pred CCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchH-------HHHHHhHHHHHhhhhc---------cc-c
Q 006282 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE-------REQELKGQFEQAMKET---------VD-K 308 (652)
Q Consensus 246 g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~-------~~~~~~~~~~~~~~~~---------~~-~ 308 (652)
.-+.|.+.+...|.-|++.|+|..+.|+.|+|..++...- +...+...+....-.+ .. .
T Consensus 336 ----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~ 411 (492)
T KOG1190|consen 336 ----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIF 411 (492)
T ss_pred ----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccC
Confidence 3699999999999999999999999999999998865421 1111111111111111 11 2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC-eeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g-~~l~v~~~ 387 (652)
+++.+|+..|+|.+++||+|++.|..-|...+...+.. +.+.++++.+.+.|+|..|+..+|+..++. ..|+|+|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 35567999999999999999999999887766544432 235699999999999999999999999985 58999998
Q ss_pred cc
Q 006282 388 QR 389 (652)
Q Consensus 388 ~~ 389 (652)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 64
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.5e-26 Score=203.18 Aligned_cols=172 Identities=34% Similarity=0.614 Sum_probs=153.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
......+|||+||+..+|++.|+|+|-++|+|.+|++.+|+.+....|||||+|.+.|||+-|++-||...+.||+|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeE-EEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~-~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
.+........ -..++||+||++.++++.|+++|+.||.+.+ -++..+ .+|.++|+|||.|++.|.+.+|+..+|+..
T Consensus 85 kas~~~~nl~-vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 85 KASAHQKNLD-VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred eccccccccc-ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 8773322222 2378999999999999999999999998765 466666 468999999999999999999999999999
Q ss_pred ecCeeeeecccccch
Q 006282 183 INDKQVFVGHFLRKQ 197 (652)
Q Consensus 183 l~g~~~~v~~~~~~~ 197 (652)
+.++.+.|..+..+.
T Consensus 164 l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKD 178 (203)
T ss_pred hcCCceEEEEEEecC
Confidence 999999998876544
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=2.3e-25 Score=234.48 Aligned_cols=259 Identities=25% Similarity=0.411 Sum_probs=217.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...+.|+|+|||..+..++|.+.|..||+|..|.+.+. .+ -|+|.|.++.+|..|+..|.++-++.-++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~-G~-----~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG-GT-----GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc-cc-----eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34589999999999999999999999999998844422 11 4999999999999999999999999999988886
Q ss_pred cCCccc------------------------------------------------ccCCCcceeecCCCccccHHHHHhhh
Q 006282 107 HRDPSI------------------------------------------------RKSGTGNIFIKNLDKSIDHKALHDTF 138 (652)
Q Consensus 107 ~~~~~~------------------------------------------------~~~~~~~lfV~nLp~~~t~~~L~~~F 138 (652)
..+.-. .......|||+||+++++.++|.+.|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 422000 00011229999999999999999999
Q ss_pred ccCCCeeEEEEeeCCCCC----cccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhh---HHHhhccCcceE
Q 006282 139 SSFGNILSCKIATDGSGQ----SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNNV 211 (652)
Q Consensus 139 s~fG~I~~~~v~~~~~g~----skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~---~~~~~~~~~~~l 211 (652)
+..|.|++|.|....++. |.|||||+|.+.++|..|++.|+|..+.|+.+.+..+...... .........+.|
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKI 616 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKI 616 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccccccee
Confidence 999999999998875543 5699999999999999999999999999999999887721111 111112335789
Q ss_pred EecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHH
Q 006282 212 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290 (652)
Q Consensus 212 ~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~ 290 (652)
+|+|+|+..+..+|+.+|+.||.+.++.+.+. ..+.++|||||.|-+..+|.+|+++|....+.||.|.+.|+.....-
T Consensus 617 lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 617 LVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred eeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHH
Confidence 99999999999999999999999999999977 56778999999999999999999999999999999999999887663
Q ss_pred H
Q 006282 291 E 291 (652)
Q Consensus 291 ~ 291 (652)
+
T Consensus 697 e 697 (725)
T KOG0110|consen 697 E 697 (725)
T ss_pred H
Confidence 3
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=215.50 Aligned_cols=166 Identities=23% Similarity=0.496 Sum_probs=149.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
.|+||||.+..++.|+.|+..|..||+|++|....|..|++.+|||||+|+-+|.|.-|++.||+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred Cccc---------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHh
Q 006282 109 DPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 178 (652)
Q Consensus 109 ~~~~---------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~l 178 (652)
-+.. ....-.+|||..+.++.+++||+..|..||.|+.|++..+. .+..+||||++|.+..+-.+|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 3211 12234579999999999999999999999999999999995 5568999999999999999999999
Q ss_pred cCceecCeeeeecccc
Q 006282 179 NGMLINDKQVFVGHFL 194 (652)
Q Consensus 179 ng~~l~g~~~~v~~~~ 194 (652)
|-+.++|..++|+.+.
T Consensus 273 NlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCV 288 (544)
T ss_pred chhhcccceEeccccc
Confidence 9999999888886553
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=5.3e-25 Score=225.97 Aligned_cols=328 Identities=21% Similarity=0.316 Sum_probs=227.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....+++|+--|.-.+++-+|+++|+.+|+|.+|+++.|..+++|+|.|||+|.+.+....|+. |.+..+.|-+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4456788888888889999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred ccCCc--------ccc----cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHH
Q 006282 106 SHRDP--------SIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 172 (652)
Q Consensus 106 s~~~~--------~~~----~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~ 172 (652)
+.... .+. ..+-..|+|+||..++++++|+.+|..||.|..+.+..|. +|.++||||++|.+.++|+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 65432 111 1111228999999999999999999999999999999994 9999999999999999999
Q ss_pred HHHHHhcCceecCeeeeecccccchhhHHHhh-ccCcceEEecCCCCCC-CHHHHHHHhccCCCeeEEEEeeCCCCCcce
Q 006282 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDEST-TDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250 (652)
Q Consensus 173 ~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~~-~~~~~~l~V~nlp~~~-t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g 250 (652)
.|++.+||..+.|+.|.|.....+........ ...+...--.+|+.-. ...++..-|.+.-.+. +
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~---~---------- 401 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS---L---------- 401 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc---c----------
Confidence 99999999999999999887665544332100 0000000111222111 1122222222111000 0
Q ss_pred eEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCC-------C
Q 006282 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-------I 323 (652)
Q Consensus 251 ~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-------~ 323 (652)
-.+...+..++..+......+....+.-..+... .... ....-|+.++|+=+. |
T Consensus 402 -----~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~p~~-~i~t~C~lL~nMFdpstete~n~ 462 (549)
T KOG0147|consen 402 -----PSTAISALLLLAKLASAAQFNGVVRVRSVDPADA-------------SPAF-DIPTQCLLLSNMFDPSTETEPNW 462 (549)
T ss_pred -----cchhhhHHHhccccchHHhhcCCcCccccCcccc-------------cccc-CCccHHHHHhhcCCcccccCcch
Confidence 0111122222221111111111000000000000 0000 145567888877222 2
Q ss_pred C---HHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 324 D---DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 324 t---e~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+ .+++.+.+++||.|..|.|..+ |-||.||.|.+.+.|..|+++|||..|.||.|..+|-...
T Consensus 463 d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 463 DQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 2 2688888899999999888665 4589999999999999999999999999999999987644
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=4.4e-24 Score=234.14 Aligned_cols=178 Identities=31% Similarity=0.501 Sum_probs=152.4
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+|||..+++++|+++|+.||.|.+|.++.+ .+|+++|||||+|.+.++|.+|+. +++..+.|+.|.|...
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999988 568999999999999999999995 9999999999999876
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
........... ..........++|||+||+..+++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.+
T Consensus 166 ~~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 166 QAEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred chhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 54332221100 0001111235789999999999999999999999999999999886 5689999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+|.+|+..|||..|.|+.|.|.|+...
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999999998843
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.5e-24 Score=198.24 Aligned_cols=169 Identities=31% Similarity=0.604 Sum_probs=154.1
Q ss_pred ccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEc
Q 006282 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283 (652)
Q Consensus 205 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~ 283 (652)
....++|.|.-||..++.||++.+|+..|+|++|++++|+ +|.+-|||||+|.+++||++|+..|||-.+..+.+.|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3456889999999999999999999999999999999995 799999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCH
Q 006282 284 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 362 (652)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~ 362 (652)
+...+.. ..+.+|||.+||..+|..||..+|++||.|..-+|..|. +|.|||.|||.|+..
T Consensus 118 ARPSs~~------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 118 ARPSSDS------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred ccCChhh------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 8665432 235689999999999999999999999999998888886 899999999999999
Q ss_pred HHHHHHHHHhcCcEecC--eeEEEEecccHH
Q 006282 363 EEASRALAEMNGKMIVS--KPLYVAVAQRKE 391 (652)
Q Consensus 363 ~~A~~A~~~lng~~~~g--~~l~v~~~~~~~ 391 (652)
++|+.||+.|||..--| .+|.|+|+....
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999999987765 689999998763
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.1e-23 Score=201.09 Aligned_cols=270 Identities=23% Similarity=0.467 Sum_probs=214.0
Q ss_pred cceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006282 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 118 ~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
++|||+.|.+.+.++.|+..|..||.|.++.+.-| -+++.|||+||+|+-+|.|.-|++.+||..++||.+.|+....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 46999999999999999999999999999999888 58999999999999999999999999999999999999866544
Q ss_pred hhhHHHh-----hccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC-CCcceeEEEeeCCHHHHHHHHHHHC
Q 006282 197 QERETVA-----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALN 270 (652)
Q Consensus 197 ~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-g~~~g~~fV~f~~~~~A~~Ai~~l~ 270 (652)
....... ....++++||..+..+.+++||+.+|+-||+|..|.+-++.+ +..|||||++|.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 3332222 236788999999999999999999999999999999999865 5689999999999999999999999
Q ss_pred CCccCCceEEEEccccchH-------------------------------------------------------------
Q 006282 271 GKKFDDREWYVGKAQKKSE------------------------------------------------------------- 289 (652)
Q Consensus 271 ~~~~~g~~l~v~~a~~~~~------------------------------------------------------------- 289 (652)
-..++|..|+|+.+-....
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 9999999888886532210
Q ss_pred --------------------------------------------------HH-HHHhHHHH--Hhh--------------
Q 006282 290 --------------------------------------------------RE-QELKGQFE--QAM-------------- 302 (652)
Q Consensus 290 --------------------------------------------------~~-~~~~~~~~--~~~-------------- 302 (652)
++ .++....+ ...
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 00 00000000 000
Q ss_pred ----hhcccccccceeeecCC--CCCCCH---HHHHHHhhhcCCeeEEEEecCCCCCC-----ccEEEEEeCCHHHHHHH
Q 006282 303 ----KETVDKFQGLNLYIKNL--GDSIDD---EKLKELFSEFGTITSCKVMRDPSGIS-----KGSGFVAFSTPEEASRA 368 (652)
Q Consensus 303 ----~~~~~~~~~~~l~V~nl--p~~~te---~~L~~~F~~fG~I~~v~i~~~~~g~s-----~g~afV~F~s~~~A~~A 368 (652)
..-.....++.+.++|+ |.+++| .+|++.+++||.|.+|.|.....+.. ----||+|+...++.+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 00011223556788887 445554 68999999999999998887653321 12369999999999999
Q ss_pred HHHhcCcEecCeeEEEEec
Q 006282 369 LAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 369 ~~~lng~~~~g~~l~v~~~ 387 (652)
...|+|+.|+|+++...+.
T Consensus 514 k~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHhhccceecCceeehhhh
Confidence 9999999999999876644
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=1.6e-23 Score=185.40 Aligned_cols=171 Identities=32% Similarity=0.554 Sum_probs=153.1
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
....+|||+||+..++++-|.++|-+.|.|.++.+.+|. +...+|||||+|.++|+|.-|++-|+...+.|+.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345789999999999999999999999999999999984 5678999999999999999999999999999999999988
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEE-EEecCC-CCCCccEEEEEeCCH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTP 362 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v-~i~~~~-~g~s~g~afV~F~s~ 362 (652)
..... ....+.+|||+||+++++|.-|.+.|+.||.+.+. +|++++ +|.++|||||.|++.
T Consensus 87 s~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 87 SAHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 62211 12245789999999999999999999999998775 888887 588999999999999
Q ss_pred HHHHHHHHHhcCcEecCeeEEEEecccHHHH
Q 006282 363 EEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (652)
Q Consensus 363 ~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r 393 (652)
+.+.+|+..|||+.++.+++.|.++.+++.+
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999887644
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=1.2e-21 Score=198.78 Aligned_cols=336 Identities=16% Similarity=0.209 Sum_probs=239.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...-.|.+++|||++|++||.++|+.+ .|.++.+.|. ++|..|-|||+|.+.+|+++||+ .+...+..+.|.|..+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 345678999999999999999999999 6888766664 68888999999999999999999 5777788899999877
Q ss_pred cCCcc-------ccc--CCCcceeecCCCccccHHHHHhhhccCCCeeE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHH
Q 006282 107 HRDPS-------IRK--SGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATDGSGQSKGFGFVQFENKESAQNAID 176 (652)
Q Consensus 107 ~~~~~-------~~~--~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~-~~v~~~~~g~skG~afV~F~t~e~A~~Ai~ 176 (652)
..++. -.+ .....|.+++||++|++++|.++|+..--|.. +.+..+..+++.|-|||+|++.+.|+.|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 54331 112 25667999999999999999999999854444 556777888899999999999999999997
Q ss_pred HhcCceecCeeeeecccccchhhHHH------------------------------------------------------
Q 006282 177 KLNGMLINDKQVFVGHFLRKQERETV------------------------------------------------------ 202 (652)
Q Consensus 177 ~lng~~l~g~~~~v~~~~~~~~~~~~------------------------------------------------------ 202 (652)
+. ...|.-+-|.|-.+.....+...
T Consensus 164 rh-re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 RH-RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred HH-HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 63 33333333333221110000000
Q ss_pred h----------------hc----------------cCc-ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcc
Q 006282 203 A----------------IK----------------TKF-NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 249 (652)
Q Consensus 203 ~----------------~~----------------~~~-~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~ 249 (652)
. .. ... ..++.++||+..++.++.++|+..-.+ .+.|-...+|+..
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccC
Confidence 0 00 000 237889999999999999999987655 6777778899999
Q ss_pred eeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccch-HHHHHHh-------------------------------HH
Q 006282 250 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS-EREQELK-------------------------------GQ 297 (652)
Q Consensus 250 g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~-~~~~~~~-------------------------------~~ 297 (652)
|-++|+|.+.++|..|+.. ++..+..+.+....-.... ....... +.
T Consensus 322 GEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~ 400 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRG 400 (510)
T ss_pred CcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCcccc
Confidence 9999999999999999853 4444544433322111000 0000000 00
Q ss_pred ------------------HHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEe
Q 006282 298 ------------------FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359 (652)
Q Consensus 298 ------------------~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F 359 (652)
.+...-.......-.+|..+.+|+..++.++.++|.++ ....|.+.+|+.+...|-|=|.|
T Consensus 401 ~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~-~~a~~~~~yd~~~~~~~~a~~~~ 479 (510)
T KOG4211|consen 401 SPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPI-RPAQVELLYDHQFQRSGDARVIF 479 (510)
T ss_pred CCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhccccc-CcccccccccccccccCceeEEE
Confidence 00000000111223458888999999999999999999 45678899998887789999999
Q ss_pred CCHHHHHHHHH
Q 006282 360 STPEEASRALA 370 (652)
Q Consensus 360 ~s~~~A~~A~~ 370 (652)
.+.++++.|+.
T Consensus 480 ~~~~~~q~a~~ 490 (510)
T KOG4211|consen 480 YNRKDYQDALM 490 (510)
T ss_pred echhhhHHHHH
Confidence 99999999996
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.2e-22 Score=189.43 Aligned_cols=186 Identities=31% Similarity=0.480 Sum_probs=157.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCcc---CCceEEEEc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF---DDREWYVGK 283 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~---~g~~l~v~~ 283 (652)
+.+.|||+-|.+.-+|||++.+|..||.|++|.+.+..+|.+|||+||.|.+..+|..||..||+... -...|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56789999999999999999999999999999999999999999999999999999999999998653 245788888
Q ss_pred cccchHHHHHHhHHHH----------------------------------------------------------------
Q 006282 284 AQKKSEREQELKGQFE---------------------------------------------------------------- 299 (652)
Q Consensus 284 a~~~~~~~~~~~~~~~---------------------------------------------------------------- 299 (652)
+....||....-....
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8766544221100000
Q ss_pred --------------------------------------------------------------------------------
Q 006282 300 -------------------------------------------------------------------------------- 299 (652)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (652)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------HhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCH
Q 006282 300 ----------------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 362 (652)
Q Consensus 300 ----------------~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~ 362 (652)
.......+...+|||||-.||.++.+.||-..|-+||.|.+.+|+.|. ++.||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000001233468999999999999999999999999999999999886 899999999999999
Q ss_pred HHHHHHHHHhcCcEecCeeEEEEecccHHH
Q 006282 363 EEASRALAEMNGKMIVSKPLYVAVAQRKEE 392 (652)
Q Consensus 363 ~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 392 (652)
.+|..||..|||..|+-|+|+|.+.++|+.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999998864
No 42
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=5.5e-20 Score=179.43 Aligned_cols=343 Identities=20% Similarity=0.173 Sum_probs=254.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhh--cCCcccCCc
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV--LNFTPLNNK 99 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~--ln~~~i~G~ 99 (652)
....+.++..++|++|...++|.+|.|-++.||+|.-+.+...++ .|.|+|++.+.|+.++.- -|...+.|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCc
Confidence 444567789999999999999999999999999998888777654 699999999999998862 245567788
Q ss_pred eeEeecccCCccccc-----CCCcc--eeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHH
Q 006282 100 SIRIMYSHRDPSIRK-----SGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 172 (652)
Q Consensus 100 ~i~i~~s~~~~~~~~-----~~~~~--lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~ 172 (652)
..-+.+|..+...|. ..+.. +.|-|--+.+|.+-|+.++...|.|+.|.|.+. +| -.|.|+|++.+.|.
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQ 173 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHH
Confidence 777777743322221 12222 345565678999999999999999999999875 43 37999999999999
Q ss_pred HHHHHhcCceecC--eeeeecccccchhhHHHh-----------------------------------------------
Q 006282 173 NAIDKLNGMLIND--KQVFVGHFLRKQERETVA----------------------------------------------- 203 (652)
Q Consensus 173 ~Ai~~lng~~l~g--~~~~v~~~~~~~~~~~~~----------------------------------------------- 203 (652)
+|...|||..|-. +.+.|+++.+.+-.....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 9999999977632 345554443211000000
Q ss_pred -----------------------------hccCcceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEE
Q 006282 204 -----------------------------IKTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253 (652)
Q Consensus 204 -----------------------------~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~f 253 (652)
.......+.|.+|.. .++-+.|.++|..||.|..|++++.+.| .++
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tam 329 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAM 329 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeE
Confidence 000112377888874 5678889999999999999999998765 799
Q ss_pred EeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHH----------HHh-------HHHHHh--hhhccccccccee
Q 006282 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ----------ELK-------GQFEQA--MKETVDKFQGLNL 314 (652)
Q Consensus 254 V~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~----------~~~-------~~~~~~--~~~~~~~~~~~~l 314 (652)
|+.-+....++|+..|++..+.|.+|.+..+....-... ..+ .++... ..+..-..+++.|
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vL 409 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVL 409 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCccee
Confidence 999999999999999999999999999988754311000 000 011111 1111223567889
Q ss_pred eecCCCCCCCHHHHHHHhhhcCC-eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 315 YIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 315 ~V~nlp~~~te~~L~~~F~~fG~-I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
+.-|.|..+||+.|.++|..-+. .++++|+.-++-+ ...|.++|++.++|..|+..+|...+.+
T Consensus 410 HffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 410 HFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEecCCCccCHHHHHHHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 99999999999999999987753 4778888665333 3479999999999999999999999875
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=184.98 Aligned_cols=147 Identities=23% Similarity=0.540 Sum_probs=138.0
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchH
Q 006282 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289 (652)
Q Consensus 210 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~ 289 (652)
.|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..++...+..|+..||+..+.|..|.|.-+++++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 5899999999999999999999999999999977 999999999999999999999999999999988766622
Q ss_pred HHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 006282 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (652)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~ 369 (652)
..++|+|+||.+.++.+||+..|++||.|.+|+|++| |+||.|.-.++|..|+
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHH
Confidence 3568999999999999999999999999999999977 9999999999999999
Q ss_pred HHhcCcEecCeeEEEEecccH
Q 006282 370 AEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 370 ~~lng~~~~g~~l~v~~~~~~ 390 (652)
+.|+|..|.|++++|.+..++
T Consensus 130 r~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hcccccccccceeeeeeeccc
Confidence 999999999999999998754
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=2.4e-21 Score=183.44 Aligned_cols=150 Identities=24% Similarity=0.479 Sum_probs=138.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
..|||||||..+++.+|+.+|++||+|+++.|+++ |+||..++...|+.|+..|++..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999885 9999999999999999999999999999999988765
Q ss_pred cccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeee
Q 006282 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (652)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~ 189 (652)
...+.+|+|+||.+.+++++|+..|.+||.|.+|+|++ +|+||+|...++|..|++.|++..+.|+++.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceee
Confidence 23456899999999999999999999999999999975 4999999999999999999999999999999
Q ss_pred ecccccchh
Q 006282 190 VGHFLRKQE 198 (652)
Q Consensus 190 v~~~~~~~~ 198 (652)
|....++..
T Consensus 144 vq~stsrlr 152 (346)
T KOG0109|consen 144 VQLSTSRLR 152 (346)
T ss_pred eeeeccccc
Confidence 988766544
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.82 E-value=7.5e-20 Score=181.73 Aligned_cols=247 Identities=20% Similarity=0.253 Sum_probs=208.1
Q ss_pred cceeecCCCccccHHHHHhhhc-cCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006282 118 GNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 118 ~~lfV~nLp~~~t~~~L~~~Fs-~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
+.+||.|||+++.+.+|+++|. +.|.|.-|.++.|..|+++|+|.|+|+++|.+++|+++||.+.++|+.+.|.-....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 4599999999999999999998 578999999999999999999999999999999999999999999999999765543
Q ss_pred hhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCC
Q 006282 197 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 276 (652)
Q Consensus 197 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g 276 (652)
+.......-..-.+.|+.++....-..-|...|+--|.+..-.+.+|.++.+++..+++|++.-.+..++.-+.......
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 33222223345567999999999998999999998898888888899999999999999998877777775444443333
Q ss_pred ceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEE
Q 006282 277 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 356 (652)
Q Consensus 277 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~af 356 (652)
+.+.. + ..+....+||.||.+.+..+.|++.|.-.|.|+++.+-.|+.|.++||+.
T Consensus 205 r~~h~-f-----------------------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 205 RSLHI-F-----------------------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhccC-C-----------------------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 33332 1 11123359999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 357 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 357 V~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
++|..+-+|..||..+++..+..++..+++..
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 99999999999999999988888888888754
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.6e-17 Score=168.94 Aligned_cols=260 Identities=18% Similarity=0.249 Sum_probs=193.2
Q ss_pred CcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006282 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
...|.+++||+++|++||.++|+.. .|.++++.+ .+|+..|-|||+|.++|++.+|+++ +.+.+..+-|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 3458889999999999999999998 677766555 5788999999999999999999966 666677777766544322
Q ss_pred hhh---HHHh--hccCcceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHC
Q 006282 197 QER---ETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270 (652)
Q Consensus 197 ~~~---~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~ 270 (652)
... .... .....-.|.+++||+.++++||.++|+..-.|.. |.+..+..+++.|.+||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 110 0001 1134566999999999999999999999887777 556677889999999999999999999996 47
Q ss_pred CCccCCceEEEEccccchHHHHHHhH--------HHHH------------------------------------------
Q 006282 271 GKKFDDREWYVGKAQKKSEREQELKG--------QFEQ------------------------------------------ 300 (652)
Q Consensus 271 ~~~~~g~~l~v~~a~~~~~~~~~~~~--------~~~~------------------------------------------ 300 (652)
.+.|..|.|.|-++.....+...... .++.
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 78888888888777654433322000 0000
Q ss_pred ----------hh---hh----c-------c-cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEE
Q 006282 301 ----------AM---KE----T-------V-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 355 (652)
Q Consensus 301 ----------~~---~~----~-------~-~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~a 355 (652)
.. .+ . . -...+..++-++||+..++-+|.++|+.. ....|.|-..++|+..|-|
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCcc
Confidence 00 00 0 0 00112568889999999999999999987 4458888888899999999
Q ss_pred EEEeCCHHHHHHHHHHhcCcEecCeeE
Q 006282 356 FVAFSTPEEASRALAEMNGKMIVSKPL 382 (652)
Q Consensus 356 fV~F~s~~~A~~A~~~lng~~~~g~~l 382 (652)
+|+|.|.++|..|+. -++..+..+-+
T Consensus 325 dveF~t~edav~Ams-kd~anm~hrYV 350 (510)
T KOG4211|consen 325 DVEFATGEDAVGAMG-KDGANMGHRYV 350 (510)
T ss_pred eeecccchhhHhhhc-cCCcccCccee
Confidence 999999999999996 44444444433
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=8.2e-19 Score=175.58 Aligned_cols=171 Identities=29% Similarity=0.473 Sum_probs=151.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
..+.|+|++|+|+++|+.|++.|++||.|.++.|++|+.+++++||+||+|.+++...++|.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999984 4567899999998776
Q ss_pred CCcccccCC----CcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 108 RDPSIRKSG----TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 108 ~~~~~~~~~----~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
...+..+.. ...|||++|+.+++++++++.|..||.|..+.+..| ....++||+||.|.+++....++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 554443333 558999999999999999999999999999999988 678899999999999999988874 36678
Q ss_pred ecCeeeeecccccchhhH
Q 006282 183 INDKQVFVGHFLRKQERE 200 (652)
Q Consensus 183 l~g~~~~v~~~~~~~~~~ 200 (652)
++++.+.|..+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 899999999888776543
No 48
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=158.17 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=199.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
..+..+..++|||.-+..+|..+|....-..-.++......++..|+|.|.|.+.|.-+-|++ .+...+.+++|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 346789999999999999999999876444444444444567777999999999999999999 4666778899999877
Q ss_pred cCCccc--------------ccCCCcceeecCCCccccHHHHHhhhcc----CCCeeEEEEeeCCCCCcccEEEEEEcCH
Q 006282 107 HRDPSI--------------RKSGTGNIFIKNLDKSIDHKALHDTFSS----FGNILSCKIATDGSGQSKGFGFVQFENK 168 (652)
Q Consensus 107 ~~~~~~--------------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~----fG~I~~~~v~~~~~g~skG~afV~F~t~ 168 (652)
..+.-+ .+...-.|.+++||+++++.++.++|.. -|....+.+++..+|+..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 654321 2223334788999999999999999962 2366788888888999999999999999
Q ss_pred HHHHHHHHHhcCceecCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCc
Q 006282 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 248 (652)
Q Consensus 169 e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~ 248 (652)
++|..|+.+. ...++.|.|.+ + ..|..++......+-.- -++.. .+.
T Consensus 217 e~aq~aL~kh-rq~iGqRYIEl--F-------------------------RSTaaEvqqvlnr~~s~---pLi~~-~~s- 263 (508)
T KOG1365|consen 217 EDAQFALRKH-RQNIGQRYIEL--F-------------------------RSTAAEVQQVLNREVSE---PLIPG-LTS- 263 (508)
T ss_pred HHHHHHHHHH-HHHHhHHHHHH--H-------------------------HHhHHHHHHHHHhhccc---cccCC-CCC-
Confidence 9999999873 33333332222 1 11233333333222100 00000 000
Q ss_pred ceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHH
Q 006282 249 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328 (652)
Q Consensus 249 ~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L 328 (652)
-+-+-+ ....+-.. ...-||.+++||++.+.|+|
T Consensus 264 p~~p~~----------------------p~~~~p~~------------------------~~kdcvRLRGLPy~AtvEdI 297 (508)
T KOG1365|consen 264 PLLPGG----------------------PARLVPPT------------------------RSKDCVRLRGLPYEATVEDI 297 (508)
T ss_pred CCCCCC----------------------ccccCCCC------------------------CCCCeeEecCCChhhhHHHH
Confidence 000000 00000000 01238999999999999999
Q ss_pred HHHhhhcCC-eeE--EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHH
Q 006282 329 KELFSEFGT-ITS--CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (652)
Q Consensus 329 ~~~F~~fG~-I~~--v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r 393 (652)
.++|..|-. |.. |.++.+..|+..|-|||+|.+.++|..|....|++...++.|.|--..-.+..
T Consensus 298 L~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 298 LDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred HHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 999999963 444 78888989999999999999999999999988888777777777665555444
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=156.65 Aligned_cols=188 Identities=30% Similarity=0.492 Sum_probs=151.5
Q ss_pred CceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHH
Q 006282 98 NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 177 (652)
Q Consensus 98 G~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 177 (652)
+|+|.|..+.. +.|....++|||+.|.+.-+|+|++.+|..||.|.+|.+....+|.+||++||.|.+.-+|..||..
T Consensus 2 nrpiqvkpads--esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADS--ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCcccccccc--ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 36666655443 3455577899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCce-ecC--eeeeecccccchhhHHHhh--------------------------------------------------
Q 006282 178 LNGML-IND--KQVFVGHFLRKQERETVAI-------------------------------------------------- 204 (652)
Q Consensus 178 lng~~-l~g--~~~~v~~~~~~~~~~~~~~-------------------------------------------------- 204 (652)
|+|.. +.| ..+.|.+.....+|....-
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 98854 222 3455544443333222110
Q ss_pred --------------------------------------------------------------------------------
Q 006282 205 -------------------------------------------------------------------------------- 204 (652)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (652)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred ------------------------------------------ccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEee
Q 006282 205 ------------------------------------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 242 (652)
Q Consensus 205 ------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~ 242 (652)
..+.+||||..||.+..+.||..+|-.||.|.+.++..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 00113499999999999999999999999999999988
Q ss_pred C-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccc
Q 006282 243 D-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287 (652)
Q Consensus 243 ~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 287 (652)
| .+..||+||||.|+++.+++.||.+|||..|+=++|.|..-..+
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 7 57889999999999999999999999999999888877554433
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=2.6e-18 Score=172.03 Aligned_cols=174 Identities=25% Similarity=0.460 Sum_probs=150.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
+...+||++|++++++|.|++.|++||+|.++.+++| .+++++||+||+|.+.+....++. .....++++.+.+.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5577999999999999999999999999999999998 569999999999999998888885 46677899999988887
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~ 364 (652)
+..+...... ......|||++|+..+++++++++|++||.|..+.++.|. +.+++||+||.|.+++.
T Consensus 84 ~r~~~~~~~~------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGR------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Cccccccccc------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 7654332211 1134579999999999999999999999999999998875 78899999999999888
Q ss_pred HHHHHHHhcCcEecCeeEEEEecccHHHHH
Q 006282 365 ASRALAEMNGKMIVSKPLYVAVAQRKEERR 394 (652)
Q Consensus 365 A~~A~~~lng~~~~g~~l~v~~~~~~~~r~ 394 (652)
..+++. ..-..|+++.+.|..|.+++...
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhhcc
Confidence 888876 78889999999999999988764
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=3e-16 Score=155.48 Aligned_cols=252 Identities=20% Similarity=0.276 Sum_probs=194.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC-C-cee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN-N-KSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~-G-~~i 101 (652)
..+..--.+.|+|+-+.||-+.|+.+|++||.|..|..+....+ -.|.|+|.+.+.|..|...|++..|. | ..+
T Consensus 145 ~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 145 DGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred CCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 33445567889999999999999999999999999977765443 36999999999999999999998774 4 467
Q ss_pred EeecccC-------------C---ccccc---------------------------------------------CCCcce
Q 006282 102 RIMYSHR-------------D---PSIRK---------------------------------------------SGTGNI 120 (652)
Q Consensus 102 ~i~~s~~-------------~---~~~~~---------------------------------------------~~~~~l 120 (652)
||.||+- | +.+.. +.+..|
T Consensus 221 rId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vl 300 (492)
T KOG1190|consen 221 RIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVL 300 (492)
T ss_pred EeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEE
Confidence 8877751 0 00000 012346
Q ss_pred eecCC-CccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhh
Q 006282 121 FIKNL-DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199 (652)
Q Consensus 121 fV~nL-p~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~ 199 (652)
.|.|| +..+|.+.|+-+|..||+|..++|..+ .+-.|+|++.+...|.-|++.|+|..+.|++++|.......-.
T Consensus 301 lvsnln~~~VT~d~LftlFgvYGdVqRVkil~n----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 301 LVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred EEecCchhccchhHHHHHHhhhcceEEEEeeec----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 66666 567899999999999999999999986 3457999999999999999999999999999999776532211
Q ss_pred HHHh----------------------hcc-------CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcce
Q 006282 200 ETVA----------------------IKT-------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250 (652)
Q Consensus 200 ~~~~----------------------~~~-------~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g 250 (652)
-+.. ... ...++.+.|+|.++++|++++.|..-|-..+....-- +.+.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcc
Confidence 1110 011 1234889999999999999999999987655544432 2355
Q ss_pred eEEEeeCCHHHHHHHHHHHCCCccCCc-eEEEEcccc
Q 006282 251 FGFVNFENADDAAKAVEALNGKKFDDR-EWYVGKAQK 286 (652)
Q Consensus 251 ~~fV~f~~~~~A~~Ai~~l~~~~~~g~-~l~v~~a~~ 286 (652)
++++.+++.|+|..|+-.+|...+... .++|+++++
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999998888755 888887654
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=6.1e-17 Score=150.12 Aligned_cols=157 Identities=25% Similarity=0.457 Sum_probs=135.1
Q ss_pred ccEEEEcCCCCCCCHHHHHH----HHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 29 TTSLYVGDLDFNVTDSQLYD----LFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~----~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+.||||.||...+.-++|+. +|++||.|++|.+++ |.+.+|.|||.|.+.+.|..|+..|++..|-|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999877 999999999999986 67899999999999999999999999999999999999
Q ss_pred cccCCcccc------------------------------------------------cCCCcceeecCCCccccHHHHHh
Q 006282 105 YSHRDPSIR------------------------------------------------KSGTGNIFIKNLDKSIDHKALHD 136 (652)
Q Consensus 105 ~s~~~~~~~------------------------------------------------~~~~~~lfV~nLp~~~t~~~L~~ 136 (652)
+++.+.+.. ...+..+|+.|||..++.+.+.+
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 998654221 12234589999999999999999
Q ss_pred hhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceec-Ceeeeecc
Q 006282 137 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGH 192 (652)
Q Consensus 137 ~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~-g~~~~v~~ 192 (652)
+|..|.....++++.. ..+.|||+|.++..|..|...+.+..+. ...+.+..
T Consensus 166 lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 9999999999998875 5678999999999999999998888775 44554433
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6.3e-17 Score=143.59 Aligned_cols=148 Identities=20% Similarity=0.355 Sum_probs=125.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
..+++|||+|||.++.|.+|.++|.+||.|.+|.+..- ...-+||||+|+++.||+.|+...++..++|..|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988543 344589999999999999999999999999999999998
Q ss_pred cCCcc------------------------cccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEE
Q 006282 107 HRDPS------------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 162 (652)
Q Consensus 107 ~~~~~------------------------~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~af 162 (652)
+.-.+ ..+.....|.|.+||.+-++.+|++.....|.|--..+.+| |++.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGV 154 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------ccee
Confidence 74311 11223345999999999999999999999999966666553 5899
Q ss_pred EEEcCHHHHHHHHHHhcCcee
Q 006282 163 VQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 163 V~F~t~e~A~~Ai~~lng~~l 183 (652)
|+|...|+-+-|+.+|....+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeehhhHHHHHHhhccccc
Confidence 999999999999999876554
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=7.3e-17 Score=146.05 Aligned_cols=90 Identities=30% Similarity=0.565 Sum_probs=83.7
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
.+.....+++|||+|||+++||++|+++|++||+|.+|+|+.|+.|++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 27 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34446678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+...+.
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999876544
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=1.5e-17 Score=171.47 Aligned_cols=180 Identities=25% Similarity=0.426 Sum_probs=149.5
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...+++|+-.+....+.-+|.++|+.+|.|.++.++.| ..+.++|.+||+|.+.++...|+ +|.|..+.|-.|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 34567888888888999999999999999999999988 56889999999999999999999 79999999999999776
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
.....+.+.... ...-..-..+...|||+||..++++++|+.+|++||.|+.|.++.|. +|+++|||||+|.+.+
T Consensus 256 Eaeknr~a~~s~----a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANASP----ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhccc----cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 443333111110 00000001122239999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+|.+|+..|||..+.|+.|.|.....+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999977654
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=165.28 Aligned_cols=256 Identities=21% Similarity=0.409 Sum_probs=198.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhcc-----------C-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQV-----------G-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~-----------G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l 91 (652)
........+||+++|..++|+....+|+.- | .|.++.++..+ ++||++|.+.++|..|+. +
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-L 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-c
Confidence 345678899999999999999999999864 3 48888887764 499999999999999998 8
Q ss_pred CCcccCCceeEeecccCCcc---------------------cccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEe
Q 006282 92 NFTPLNNKSIRIMYSHRDPS---------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150 (652)
Q Consensus 92 n~~~i~G~~i~i~~s~~~~~---------------------~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~ 150 (652)
+...+.|.++++...+..-. ..-.....+||++||..+++..+.++...||.+..+.++
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv 322 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV 322 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheee
Confidence 88999999998864432210 011233459999999999999999999999999999999
Q ss_pred eC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhhHHHhh------------------ccCcceE
Q 006282 151 TD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI------------------KTKFNNV 211 (652)
Q Consensus 151 ~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~~------------------~~~~~~l 211 (652)
.| .+|.++||+|.+|.+......|+..+||+.+.++.+.+..+........... ......|
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 99 5689999999999999999999999999999999998876543322211110 0111122
Q ss_pred EecCCC--CCC-C-------HHHHHHHhccCCCeeEEEEeeC-CC---CCcceeEEEeeCCHHHHHHHHHHHCCCccCCc
Q 006282 212 FVKNLD--EST-T-------DEDLKKIFGEYGTITSAVVMRD-GD---GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 277 (652)
Q Consensus 212 ~V~nlp--~~~-t-------~~~l~~~F~~~G~v~~~~i~~~-~~---g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~ 277 (652)
.+.|+= .+. + .|+++.-|++||.|.+|.+.++ .+ ....|..||+|.+.+++++|.++|+|..|.++
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 333321 000 1 2456677899999999999877 32 45577889999999999999999999999999
Q ss_pred eEEEEcccc
Q 006282 278 EWYVGKAQK 286 (652)
Q Consensus 278 ~l~v~~a~~ 286 (652)
.+...+...
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 988877643
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2e-16 Score=165.79 Aligned_cols=268 Identities=20% Similarity=0.401 Sum_probs=199.7
Q ss_pred CcceeecCCCccccHHHHHhhhccC-----------C-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceec
Q 006282 117 TGNIFIKNLDKSIDHKALHDTFSSF-----------G-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (652)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~Fs~f-----------G-~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~ 184 (652)
...+.+.+++..++++....+|..- | .+++|.+.. .++++|++|.+.++|..++ .+++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhh-cccchhhC
Confidence 3458999999999999999988754 3 367777655 5779999999999999998 56788888
Q ss_pred CeeeeecccccchhhHHHhh-----------------ccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CC
Q 006282 185 DKQVFVGHFLRKQERETVAI-----------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 246 (652)
Q Consensus 185 g~~~~v~~~~~~~~~~~~~~-----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g 246 (652)
|..+.+.............. ......+||++||...++++++++.+.||.+....+.++. +|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 87776654433221111100 1122459999999999999999999999999999999884 58
Q ss_pred CcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHH----HH--HhhhhcccccccceeeecCC-
Q 006282 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ----FE--QAMKETVDKFQGLNLYIKNL- 319 (652)
Q Consensus 247 ~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~l~V~nl- 319 (652)
.++||+|.+|.+......|+..|||..+.++.|.|..+............. .. .....+........|.+.|+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 999999999999999999999999999999999999886654332221110 00 00001112223344555554
Q ss_pred -CCCC-CH-------HHHHHHhhhcCCeeEEEEecC-C---CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 320 -GDSI-DD-------EKLKELFSEFGTITSCKVMRD-P---SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 320 -p~~~-te-------~~L~~~F~~fG~I~~v~i~~~-~---~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+++. ++ |+++..+++||.|.+|.|.++ . ...+.|..||+|.+.+++++|.++|+|.+|+++.+...+
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1111 11 467777889999999999887 3 234678899999999999999999999999999999988
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
....
T Consensus 489 ydeD 492 (500)
T KOG0120|consen 489 YDED 492 (500)
T ss_pred cCHH
Confidence 7754
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1e-15 Score=138.57 Aligned_cols=82 Identities=33% Similarity=0.581 Sum_probs=76.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
..+++|||+||++++++++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999875 7899999999999999999999999999999999999998
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 753
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.62 E-value=6.8e-15 Score=136.58 Aligned_cols=175 Identities=23% Similarity=0.409 Sum_probs=142.5
Q ss_pred cceEEecCCCCCCCHHHHHH----HhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEc
Q 006282 208 FNNVFVKNLDESTTDEDLKK----IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283 (652)
Q Consensus 208 ~~~l~V~nlp~~~t~~~l~~----~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~ 283 (652)
+.+|||.||...+..++|+. +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|+.+|+|..+.|+.+.+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34899999999999999988 999999999988775 467899999999999999999999999999999999999
Q ss_pred cccchHHHHHHhHHH---------HH------hhhh-----------------cccccccceeeecCCCCCCCHHHHHHH
Q 006282 284 AQKKSEREQELKGQF---------EQ------AMKE-----------------TVDKFQGLNLYIKNLGDSIDDEKLKEL 331 (652)
Q Consensus 284 a~~~~~~~~~~~~~~---------~~------~~~~-----------------~~~~~~~~~l~V~nlp~~~te~~L~~~ 331 (652)
|.+++.--...+..+ +. .... .....+...||+.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 987653222110000 00 0000 011345678999999999999999999
Q ss_pred hhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec-CeeEEEEecc
Q 006282 332 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQ 388 (652)
Q Consensus 332 F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~-g~~l~v~~~~ 388 (652)
|+.|....+++++... ++.|||+|.+...|..|...+.|..|- ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998763 568999999999999999999999887 7788887764
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=3.7e-13 Score=132.11 Aligned_cols=244 Identities=21% Similarity=0.277 Sum_probs=183.2
Q ss_pred CCCCCCccEEEEcCCC--CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC-C-
Q 006282 23 SGNQFLTTSLYVGDLD--FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN-N- 98 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp--~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~-G- 98 (652)
.+...++..|.+.=|. +.+|.+.|+.++..+|+|..|-|++... -.|.|+|.+.+.|++|.+.||+..|. |
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-----VQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-----VQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc-----eeeEEeechhHHHHHHHhhcccccccccc
Confidence 3444556677766664 6699999999999999999999988633 37999999999999999999998874 3
Q ss_pred ceeEeecccCCc----------------cc--------------------------cc----------------------
Q 006282 99 KSIRIMYSHRDP----------------SI--------------------------RK---------------------- 114 (652)
Q Consensus 99 ~~i~i~~s~~~~----------------~~--------------------------~~---------------------- 114 (652)
.+++|.+++.+. .. +.
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 467777765210 00 00
Q ss_pred ----------------CCCcceeecCCCc-cccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHH
Q 006282 115 ----------------SGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 177 (652)
Q Consensus 115 ----------------~~~~~lfV~nLp~-~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 177 (652)
....-+.|.+|+. .++.+.|+++|..||+|+.+++++. ..|.|.|+..+..+.++|+..
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHH
Confidence 0011278889974 4577899999999999999999986 456799999999999999999
Q ss_pred hcCceecCeeeeecccccc------------------------hhh-------HHHhhccCcceEEecCCCCCCCHHHHH
Q 006282 178 LNGMLINDKQVFVGHFLRK------------------------QER-------ETVAIKTKFNNVFVKNLDESTTDEDLK 226 (652)
Q Consensus 178 lng~~l~g~~~~v~~~~~~------------------------~~~-------~~~~~~~~~~~l~V~nlp~~~t~~~l~ 226 (652)
||+..+.|.++.+...... ..| ........++.|..-|.|..+||+.|.
T Consensus 345 Lnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~ 424 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLI 424 (494)
T ss_pred hccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHH
Confidence 9999988888877544311 000 001112334568889999999999999
Q ss_pred HHhccCCC-eeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCC
Q 006282 227 KIFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 276 (652)
Q Consensus 227 ~~F~~~G~-v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g 276 (652)
++|...+. -.++++...++-+ ...|.++|++.++|..|+-.+|...+.+
T Consensus 425 ~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 425 GICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred HHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 99987763 4556665544433 3368999999999999999999887754
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.56 E-value=4.5e-13 Score=143.10 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=74.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
-+++|||+.|+..+++.+|.++|+.||+|.+|.++.. +|||||++....+|.+|+.+|++..+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4678999999999999999999999999999998765 89999999999999999999999999999999999987
Q ss_pred HHHHH
Q 006282 390 KEERR 394 (652)
Q Consensus 390 ~~~r~ 394 (652)
+..+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65444
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.3e-14 Score=114.96 Aligned_cols=70 Identities=43% Similarity=0.742 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 32 L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
|||+|||+++|+++|+++|+.||.|..+++.++ .++++.|||||.|.+.++|++|++.+++..+.|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7789999999999999999999999999999999986
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.8e-14 Score=113.08 Aligned_cols=70 Identities=47% Similarity=0.797 Sum_probs=67.6
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 314 l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
|||+|||.++++++|+++|+.||.|..++++.+..+.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999885
No 64
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.2e-13 Score=122.99 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=132.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
..+.+||+|||.++.+.+|.++|-+||.|..|.++.... .-+|+||+|++..+|+.||..-++..++|..|.|.++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 457799999999999999999999999999998875432 246999999999999999999999999999999998765
Q ss_pred chHHHHHHhHHHH--------HhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEE
Q 006282 287 KSEREQELKGQFE--------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358 (652)
Q Consensus 287 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~ 358 (652)
-......-..... -...-...+-....|.|.+||.+-++.+|+++..+-|.|....+.+| |++.|.
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 4211000000000 00000011112346999999999999999999999999999999887 379999
Q ss_pred eCCHHHHHHHHHHhcCcEec--CeeEEEEe
Q 006282 359 FSTPEEASRALAEMNGKMIV--SKPLYVAV 386 (652)
Q Consensus 359 F~s~~~A~~A~~~lng~~~~--g~~l~v~~ 386 (652)
|...|+-+-|+..|...++. |-..++.+
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99999999999999888775 44444443
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=4.8e-13 Score=130.67 Aligned_cols=180 Identities=19% Similarity=0.272 Sum_probs=139.4
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCee--------EEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 277 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~ 277 (652)
..+++|||+|||.++|.+++.++|+++|.|. .|.+.++..|+.+|-|.|.|-..+++.-|+..|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4567899999999999999999999999875 46788889999999999999999999999999999999999
Q ss_pred eEEEEccccchH--H---------HHHHhHHHHHhh---------hhcccccccceeeecCCC----CCCC-------HH
Q 006282 278 EWYVGKAQKKSE--R---------EQELKGQFEQAM---------KETVDKFQGLNLYIKNLG----DSID-------DE 326 (652)
Q Consensus 278 ~l~v~~a~~~~~--~---------~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nlp----~~~t-------e~ 326 (652)
.+.|.+|+-... . ....++...... ......-..++|.++|+= ...+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999863210 0 000000000000 011112235678888871 1222 36
Q ss_pred HHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 327 ~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
+|++-+++||.|.+|.|... ...|.+-|.|.+.++|..+|+.|+|+.|+|+.|...+..
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 78888999999999988744 246789999999999999999999999999999888654
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=3.3e-14 Score=137.59 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=76.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.....|||.|||+...|-||+.+|++||.|.+|.|+.++.| |||||||+|++.+||++|..+|||..+.||+|.|+.+-
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34567999999999999999999999999999999999887 79999999999999999999999999999999999887
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 55
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.1e-14 Score=130.70 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=80.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
...+++|.|.||+.+++|++|.+||..||.|..|.|.+|+.||.++|||||.|.+.+||.+|++.||+.-++.--|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 006282 106 SHRD 109 (652)
Q Consensus 106 s~~~ 109 (652)
++..
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9863
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.8e-14 Score=131.69 Aligned_cols=79 Identities=29% Similarity=0.461 Sum_probs=71.9
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.-++|||++|+|++..|+|+++|++||+|+++.|+.|+ +|+|||||||+|++.++|.+|++.- +-.|+||+-.|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 34689999999999999999999999999999999886 8999999999999999999999844 458899999999886
Q ss_pred c
Q 006282 389 R 389 (652)
Q Consensus 389 ~ 389 (652)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.8e-14 Score=135.50 Aligned_cols=168 Identities=27% Similarity=0.438 Sum_probs=133.2
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchH
Q 006282 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289 (652)
Q Consensus 210 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~ 289 (652)
.+||++|++.+.+.+|..+|..||.+..+.+.. ||+||.|.+..+|..|+..++++.+.+..+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 589999999999999999999999999998764 4999999999999999999999999998888888764321
Q ss_pred HHHHHhHHH-H-HhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 006282 290 REQELKGQF-E-QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367 (652)
Q Consensus 290 ~~~~~~~~~-~-~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~ 367 (652)
......... . .........-..+.|.|.|+..++.+.+|.++|+.+|.++...++ ++++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhh
Confidence 110000000 0 011111123356789999999999999999999999999666553 5599999999999999
Q ss_pred HHHHhcCcEecCeeEEEEecccHH
Q 006282 368 ALAEMNGKMIVSKPLYVAVAQRKE 391 (652)
Q Consensus 368 A~~~lng~~~~g~~l~v~~~~~~~ 391 (652)
|+..+++..+.++.|.+.......
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~~d~ 172 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNSRDR 172 (216)
T ss_pred cchhccchhhcCceeeecccCcch
Confidence 999999999999999995444433
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.5e-14 Score=117.21 Aligned_cols=84 Identities=30% Similarity=0.504 Sum_probs=79.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
-..+++||||||+..++|+.|+|||+.+|+|..|.+=.|+.+.+.-|||||+|.+.+||+.|+..+|++.++.++|+|-|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 006282 106 SHRD 109 (652)
Q Consensus 106 s~~~ 109 (652)
..--
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7643
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.3e-14 Score=132.94 Aligned_cols=150 Identities=23% Similarity=0.484 Sum_probs=128.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
..+||++||+.+.+.+|.+||..||.|.++.+.. ||+||+|.+..||..|+..+|+..|.|..+.++|....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999998865 69999999999999999999999999988888887731
Q ss_pred ------c------c-cc-----cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHH
Q 006282 110 ------P------S-IR-----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171 (652)
Q Consensus 110 ------~------~-~~-----~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A 171 (652)
+ . .+ ......+++.++...+.+.+|.+.|+.+|.+..... ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 0 0 11 123445899999999999999999999998844333 567899999999999
Q ss_pred HHHHHHhcCceecCeeeeecccc
Q 006282 172 QNAIDKLNGMLINDKQVFVGHFL 194 (652)
Q Consensus 172 ~~Ai~~lng~~l~g~~~~v~~~~ 194 (652)
..|+..+++..+.++.+.+....
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhcchhccchhhcCceeeecccC
Confidence 99999999999999999884433
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7.1e-14 Score=129.93 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=72.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
-+.||||+|+|+++.+.|+++|++||.|++..|+.|+.|+||+||+||.|.+.++|.+|++.-| -.|+||+..|.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 5899999999999999999999999999999999999999999999999999999999999654 67899998887654
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.48 E-value=9.2e-13 Score=128.71 Aligned_cols=165 Identities=19% Similarity=0.348 Sum_probs=136.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--------VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~--------i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
+.-+++|||+|||.++|.+++.++|+.||-|.. |++.++.. |+.+|=|.+.|...++.+-|+..|+...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445788999999999999999999999997744 78899866 899999999999999999999999999999
Q ss_pred CceeEeecccCC------------------------------------cccccCCCcceeecCCC----cccc-------
Q 006282 98 NKSIRIMYSHRD------------------------------------PSIRKSGTGNIFIKNLD----KSID------- 130 (652)
Q Consensus 98 G~~i~i~~s~~~------------------------------------~~~~~~~~~~lfV~nLp----~~~t------- 130 (652)
|+.|+|..++-. ...+....++|.++|+= ...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999876510 11233445668888871 1111
Q ss_pred HHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccc
Q 006282 131 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 194 (652)
Q Consensus 131 ~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~ 194 (652)
.++|.+-+++||.|.++.|... .+.|.+-|.|.+.++|..||+.|+|..+.|+.|......
T Consensus 290 kedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 4677788999999999988743 467889999999999999999999999999999876543
No 74
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=142.60 Aligned_cols=357 Identities=18% Similarity=0.186 Sum_probs=237.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...+.+-+.+++.+..+.+++++|-.. .|-++.+..+...+.-.|-+||.|....++.+|+. .|...+..|.+.|...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 346777788999999999999999765 56666777776655557999999999999999998 5777778888877533
Q ss_pred cCC----------------------------cc---------cccCCCcceeecCCCccccHHHHHhhhccCCCeeE-EE
Q 006282 107 HRD----------------------------PS---------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CK 148 (652)
Q Consensus 107 ~~~----------------------------~~---------~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~-~~ 148 (652)
-.+ .. ........|+|..||..+++.++.++|++.-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 211 00 11123446999999999999999999999877777 66
Q ss_pred EeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchh-------------------hHHHhh-----
Q 006282 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE-------------------RETVAI----- 204 (652)
Q Consensus 149 v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~-------------------~~~~~~----- 204 (652)
+....++..++-|||.|.+++++..|...-+..++..+.|.|....+... ++....
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~ 546 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPS 546 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccc
Confidence 66668899999999999998888888765555566656666643321110 000000
Q ss_pred -----------c-cCc---------------------------------------------------ceEEecCCCCCCC
Q 006282 205 -----------K-TKF---------------------------------------------------NNVFVKNLDESTT 221 (652)
Q Consensus 205 -----------~-~~~---------------------------------------------------~~l~V~nlp~~~t 221 (652)
. ..+ -++-|.|+++...
T Consensus 547 v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~ 626 (944)
T KOG4307|consen 547 VSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEHTRWCVQVNNVPFRMK 626 (944)
T ss_pred hhhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccccCCcccccCccccCCCccccchhhhhhhcccCcceeec
Confidence 0 000 0145666666665
Q ss_pred HHHHHHHhccC------------CCee-----EE---EEe------------------------eCCCCCcceeEEEeeC
Q 006282 222 DEDLKKIFGEY------------GTIT-----SA---VVM------------------------RDGDGKSKCFGFVNFE 257 (652)
Q Consensus 222 ~~~l~~~F~~~------------G~v~-----~~---~i~------------------------~~~~g~~~g~~fV~f~ 257 (652)
.+++.+.|+.- |.+. ++ .++ ....-.+.|.-+++|.
T Consensus 627 ~~~~~~~~sekn~Pa~~~~~~~~gv~~~p~v~~~~~~~l~~~r~~~~g~l~tg~~lr~~~i~~~~~~~~~~~g~~~~e~~ 706 (944)
T KOG4307|consen 627 DEELLEWFSEKNRPAKLTRTFYDGVASDPWVAEFSSESLMKRRSFGIGTLCTGRTLRLRYIDNAKADEILKIGDVYGEGK 706 (944)
T ss_pred chhhhhhhcccCCcccccccccCCCCCCcccccccccccccccCCCccccccCcccccchhhhhhhccccccccceeccC
Confidence 55555544321 0000 00 000 0011123455688999
Q ss_pred CHHHHHHHHHHHCCCccCCceEEEEccccchH---------------------------------------H--------
Q 006282 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSE---------------------------------------R-------- 290 (652)
Q Consensus 258 ~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~---------------------------------------~-------- 290 (652)
+.-..+.|+...+.+...++.+.+..+..... +
T Consensus 707 ~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs~~~~p~~p~p~~~gg~nG~~~p~pn~~NdGapg~g~~vp~~f~~gp~~ 786 (944)
T KOG4307|consen 707 RQMNEEAALQHEVAEKANPPSFFNAPAATRGSGPMPPLNPAPLPSGGQNGMNVPPPNGFNDGAPGRGGFVPRGFSQGPGM 786 (944)
T ss_pred CccchhHHHHHHhhhhccCCCcccccccccccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcCCcCCccccCCCCC
Confidence 99888899888777766555544443321100 0
Q ss_pred -----------------HHHHh----HHHH---------------------------------------Hhhhhcccccc
Q 006282 291 -----------------EQELK----GQFE---------------------------------------QAMKETVDKFQ 310 (652)
Q Consensus 291 -----------------~~~~~----~~~~---------------------------------------~~~~~~~~~~~ 310 (652)
...+. ..+. ....+ ..+..
T Consensus 787 ~~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~rggpp~~g~gpg~~~g~~p~~~~~P~~~~~~-~~~~p 865 (944)
T KOG4307|consen 787 GRGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFRGGPPGRGGGPGGFQGGSPGDDSQPSQELME-LIKSP 865 (944)
T ss_pred CCCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH-hcCCC
Confidence 00000 0000 00000 01123
Q ss_pred cc-eeeecCCCCCCCHHHHHHHhhhcCCe-eEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 311 GL-NLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 311 ~~-~l~V~nlp~~~te~~L~~~F~~fG~I-~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
++ .|-+.|+|++++-+||.++|..|-.+ .+|.+.++++|...|.|.|.|++.++|..|...++++.|..+.++|.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 44 79999999999999999999999544 567777888999999999999999999999999999999999999875
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=1.7e-13 Score=108.58 Aligned_cols=70 Identities=30% Similarity=0.607 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 32 L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
|||+|||+++++++|+++|+.+|.|..+++.+++. ++++|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999988999999875
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=2.9e-13 Score=107.25 Aligned_cols=70 Identities=40% Similarity=0.701 Sum_probs=65.2
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 314 l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
|||+|||+++++++|+++|+.||.|..+++..+++|.++|+|||+|.|.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987789999999999999999999999999999999874
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.4e-12 Score=119.75 Aligned_cols=157 Identities=18% Similarity=0.295 Sum_probs=119.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEE-eeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc---CCc
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC-RDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---NNK 99 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~-~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i---~G~ 99 (652)
+.+..-++|||.+||.++...+|+.+|..|--.....+. .++...-..-+|||.|.+..+|..|++.||+..| .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 345568999999999999999999999988433333332 2222223346999999999999999999999887 578
Q ss_pred eeEeecccCCcccc------------------------------------------------------------------
Q 006282 100 SIRIMYSHRDPSIR------------------------------------------------------------------ 113 (652)
Q Consensus 100 ~i~i~~s~~~~~~~------------------------------------------------------------------ 113 (652)
.++|.+++.++...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 99998775321100
Q ss_pred ------------------cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 006282 114 ------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 175 (652)
Q Consensus 114 ------------------~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai 175 (652)
.+...+|||.||..++++++|+.+|+.|-.....+|.. .. ....+|+.|++.+.|..|+
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHH
Confidence 01122499999999999999999999997766666543 22 2347999999999999999
Q ss_pred HHhcCcee
Q 006282 176 DKLNGMLI 183 (652)
Q Consensus 176 ~~lng~~l 183 (652)
..+.|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99988776
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=7.7e-13 Score=135.06 Aligned_cols=147 Identities=27% Similarity=0.498 Sum_probs=117.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc-
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH- 107 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~- 107 (652)
.++|||+|||.++|+++|+++|..||.|..|++..|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred ---CCcc------------------cccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCC-cccEEEEEE
Q 006282 108 ---RDPS------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQF 165 (652)
Q Consensus 108 ---~~~~------------------~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~-skG~afV~F 165 (652)
.... ........+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111 112234558999999999999999999999999666665553222 333333444
Q ss_pred cCHHHHHHHH
Q 006282 166 ENKESAQNAI 175 (652)
Q Consensus 166 ~t~e~A~~Ai 175 (652)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4444444433
No 79
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.2e-13 Score=126.96 Aligned_cols=82 Identities=33% Similarity=0.541 Sum_probs=77.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|.|.||+.++++++|+++|.+||.|.++.|.+|. +|.+||||||.|.+.++|.+||..|||.-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999999886 8999999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3e-13 Score=119.82 Aligned_cols=80 Identities=31% Similarity=0.488 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...+.||||||+..+++.||...|..||+|.+|+|-+. .-|||||+|+++.||+.|+..|++..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999999874 3389999999999999999999999999999999998
Q ss_pred cCCcc
Q 006282 107 HRDPS 111 (652)
Q Consensus 107 ~~~~~ 111 (652)
.-.+.
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86543
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=5.3e-13 Score=128.97 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=71.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
.++|||+||++++||++|+++|+.||+|.+|+|++|.. ++|||||+|.+.++|+.||. ||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999864 45899999999999999996 999999999999998764
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.2e-12 Score=126.66 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=69.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.++|||+||++.+++++|+++|+.||.|++|+|..+. .++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4689999999999999999999999999999999885 357999999999999999996 99999999999999754
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.39 E-value=4.3e-12 Score=116.53 Aligned_cols=170 Identities=21% Similarity=0.364 Sum_probs=124.1
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--CCCcceeEEEeeCCHHHHHHHHHHHCCCccC---CceEE
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 280 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~---g~~l~ 280 (652)
...++|||.+||.++...+|..+|..|---+.+.+.... +...+.+||+.|.+..+|..|++.|||..|+ +..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 456889999999999999999999999766666666543 2346689999999999999999999999885 55666
Q ss_pred EEccccchHHHHH--------------------Hh-HHHH----------------------------------Hh----
Q 006282 281 VGKAQKKSEREQE--------------------LK-GQFE----------------------------------QA---- 301 (652)
Q Consensus 281 v~~a~~~~~~~~~--------------------~~-~~~~----------------------------------~~---- 301 (652)
+..+++...+... .+ ...+ ..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 6666533211000 00 0000 00
Q ss_pred ------hhh---cccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 302 ------MKE---TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 302 ------~~~---~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
.+. ........+|||-||..+++|++|+.+|+.|-....++|... .| ...|||.|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHh
Confidence 000 000012345999999999999999999999988888877543 23 568999999999999999999
Q ss_pred cCcEec
Q 006282 373 NGKMIV 378 (652)
Q Consensus 373 ng~~~~ 378 (652)
.|..+-
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 998764
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6.5e-14 Score=124.44 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.++-|||||||.++||-+|.-+||+||.|++|.++||+.||+|.||||+.|++..+-.-|++.||+..|.||.|||-...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999997543
No 85
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=5.3e-15 Score=159.69 Aligned_cols=323 Identities=18% Similarity=0.182 Sum_probs=240.2
Q ss_pred CccEEEEcCCCCCCCHHHHH-HHHhccCCeEE-EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 28 LTTSLYVGDLDFNVTDSQLY-DLFSQVGQVLS-VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~-~~Fs~~G~V~~-i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..++++|.|.+..-+...|. .+|+.|+-+.. ++. ...++.+-.||+.-.+++++..++..+.......-++-+.-
T Consensus 478 md~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred hhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 34678888998888888888 78877753322 221 22344667899999999999999998876555444443322
Q ss_pred ccCCc-----ccccCCCcceeecCCCccccHH-HHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHh
Q 006282 106 SHRDP-----SIRKSGTGNIFIKNLDKSIDHK-ALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178 (652)
Q Consensus 106 s~~~~-----~~~~~~~~~lfV~nLp~~~t~~-~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~l 178 (652)
+.... ....-......+.++.+....+ ..+..|..+|+|..+++... ..-....++++.++...++..|. ..
T Consensus 555 ~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~p 633 (881)
T KOG0128|consen 555 LCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VP 633 (881)
T ss_pred hhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cc
Confidence 11111 1111123345667776666555 56788999999999998873 22223337889999999998887 44
Q ss_pred cCceecCeeeeecccccchhhHHHhhc----cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEe-eCCCCCcceeEE
Q 006282 179 NGMLINDKQVFVGHFLRKQERETVAIK----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGF 253 (652)
Q Consensus 179 ng~~l~g~~~~v~~~~~~~~~~~~~~~----~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~-~~~~g~~~g~~f 253 (652)
.+..+.++...+....++......... .....+|++||+..+.+++|...|..+|.+..+.+. ...+++-+|+|+
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y 713 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAY 713 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccccccee
Confidence 677777888877777665533322221 223458999999999999999999999988877766 446788899999
Q ss_pred EeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhh
Q 006282 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 333 (652)
Q Consensus 254 V~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~ 333 (652)
+.|...+++.+|+.. ....+.|+ ..|+|.|.|...|+++|+.+|+
T Consensus 714 ~~F~~~~~~~aaV~f-~d~~~~gK----------------------------------~~v~i~g~pf~gt~e~~k~l~~ 758 (881)
T KOG0128|consen 714 VEFLKPEHAGAAVAF-RDSCFFGK----------------------------------ISVAISGPPFQGTKEELKSLAS 758 (881)
T ss_pred eEeecCCchhhhhhh-hhhhhhhh----------------------------------hhhheeCCCCCCchHHHHhhcc
Confidence 999999999999964 43333331 1599999999999999999999
Q ss_pred hcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 334 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 334 ~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
.+|++++++++....|+.+|-+||.|.+..+|.+++.......+..+.+.|++.++
T Consensus 759 ~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 759 KTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999989999999999999999999999988888777777777776554
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=2.5e-12 Score=103.68 Aligned_cols=85 Identities=27% Similarity=0.491 Sum_probs=76.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
.--++..++.|||+|||.++|.++.+++|..||+|..|||=..+.|+ |-|||-|++..||.+|++.|++..+.++.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr---GTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR---GTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC---ceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 33456678999999999999999999999999999999998776665 899999999999999999999999999999
Q ss_pred EeecccCC
Q 006282 102 RIMYSHRD 109 (652)
Q Consensus 102 ~i~~s~~~ 109 (652)
.|.+-+..
T Consensus 88 ~vlyyq~~ 95 (124)
T KOG0114|consen 88 VVLYYQPE 95 (124)
T ss_pred EEEecCHH
Confidence 99876643
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=1.1e-12 Score=119.00 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=79.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+-.-+++|.|-||-+-+|.++|+.+|++||.|.+|.|.+|..|+.++|||||.|....||++|++.|++..++|+.|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 006282 105 YSHR 108 (652)
Q Consensus 105 ~s~~ 108 (652)
++.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 7753
No 88
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=115.04 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...+.|||+||+..+++.||..+|..||.|.+|.|..+ ..|||||+|+++.+|..|+..|+|+.|+|..|.|++..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34688999999999999999999999999999999886 47799999999999999999999999999999999876
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.3e-12 Score=122.48 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=78.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
+...+-+||||+-|+++++|..|++.|+.||+|..|++++|+.|++|+|||||+|++..|-..|.+..++..|+|+.|-|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecc
Q 006282 104 MYS 106 (652)
Q Consensus 104 ~~s 106 (652)
-+.
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 643
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.3e-12 Score=118.57 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=74.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.+.|.|.||.+.++.++|+.+|++||.|-+|.|.+|. ++.++|||||.|.+..+|+.|++.|+|.+++|+.|.|.+++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4679999999999999999999999999999999996 88999999999999999999999999999999999999876
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4.3e-12 Score=120.59 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.+.+|||+||++++||++|+++|+.||+|.+|++.+|. ++.|+|||+|.++++|+.|+. ||+..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999999994 445899999999999999997 99999999999997533
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=6.6e-12 Score=127.43 Aligned_cols=81 Identities=22% Similarity=0.421 Sum_probs=73.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCH--HHHHHHHHHhcCcEecCeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP--EEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~--~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
..+.+|||+||++.+++++|+.+|+.||.|.+|.|+++ +| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34678999999999999999999999999999999954 55 99999999987 789999999999999999999999
Q ss_pred cccHHH
Q 006282 387 AQRKEE 392 (652)
Q Consensus 387 ~~~~~~ 392 (652)
|++.-.
T Consensus 85 AKP~YL 90 (759)
T PLN03213 85 AKEHYL 90 (759)
T ss_pred ccHHHH
Confidence 987643
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1e-11 Score=98.17 Aligned_cols=72 Identities=43% Similarity=0.746 Sum_probs=67.8
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
+|||+|||..+++++|+++|+.||.|..+++..+. +.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 7789999999999999999999999999999998873
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=7.5e-12 Score=98.98 Aligned_cols=71 Identities=35% Similarity=0.678 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
+|||+|||.++++++|+++|+.||+|..+++.++. +.++|+|||+|.+.++|++|++.+++..|.|+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 678899999999999999999999999999999876
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=5.1e-12 Score=128.22 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHhhcCCcccCCceeEee
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP--ADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~--e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
..+.+||||||++++|+++|..+|+.||.|.+|.|+|+ |+ +|||||+|.+. +++.+|++.||+..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34689999999999999999999999999999999965 55 79999999987 78999999999999999999998
Q ss_pred cccCCc----------ccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEE
Q 006282 105 YSHRDP----------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149 (652)
Q Consensus 105 ~s~~~~----------~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v 149 (652)
.++..- .... ....+.+-.. ..+...|.-+|-.++.|.++-+
T Consensus 84 KAKP~YLeRLkrEReea~s~-~~~~~kl~k~--~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 84 KAKEHYLARLKREWEAASST-SDNTIKAPSD--SPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred eccHHHHHHHHHHHHHhhcc-cccccccccc--CCccceeeEecccccccccccc
Confidence 776321 0000 1111211111 1345677788888887766544
No 96
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.9e-12 Score=123.39 Aligned_cols=103 Identities=27% Similarity=0.447 Sum_probs=88.2
Q ss_pred cCCcccCCceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHH
Q 006282 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170 (652)
Q Consensus 91 ln~~~i~G~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~ 170 (652)
-++....|.++....+.+ +..+.+.++|.|.|||+...+-||+.+|.+||.|++++|+.++.| |||||||+|++.+|
T Consensus 72 ~~~~~t~g~~~~~~~st~--s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~d 148 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTN--SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPAD 148 (376)
T ss_pred cCCCCCCCCccccCCCCc--CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhh
Confidence 345556666665544333 344566778999999999999999999999999999999999887 89999999999999
Q ss_pred HHHHHHHhcCceecCeeeeecccccc
Q 006282 171 AQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 171 A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
|++|.++|||..+.||+|.|.....+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999887655
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=125.90 Aligned_cols=164 Identities=32% Similarity=0.469 Sum_probs=124.0
Q ss_pred cceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 208 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
..+|||+||+.++++++|.++|..||.|..+.+..+ .+|.++|||||.|.+.+++..|+..+++..+.|+.+.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 588999999999999999999999999999999998 5899999999999999999999999999999999999999653
Q ss_pred ----chHHHHH--HhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCC-CccEEEEEe
Q 006282 287 ----KSEREQE--LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAF 359 (652)
Q Consensus 287 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~-s~g~afV~F 359 (652)
....... ....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2111100 000001111122334567789999999999999999999999999777776554332 334444555
Q ss_pred CCHHHHHHHHHH
Q 006282 360 STPEEASRALAE 371 (652)
Q Consensus 360 ~s~~~A~~A~~~ 371 (652)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555554443
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=9.6e-12 Score=118.21 Aligned_cols=76 Identities=20% Similarity=0.379 Sum_probs=69.9
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.+.+|||+||++.+|+++|+++|+.||+|.+|+|++| +.++|||||+|.++++|..|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999988 5667899999999999999996 99999999999988443
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1e-11 Score=97.74 Aligned_cols=70 Identities=37% Similarity=0.683 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 34 V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
|+|||.++++++|+++|+.||.|..++++.+..+++++|||||.|.+.++|.+|++.+++..+.|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888999999999999999999999999999999999887
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.9e-12 Score=106.89 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=79.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
+-.+=.|||.+++.+.||++|.+.|..||+|++|.+-.|..|+-.+|||+|+|.+.++|..|++.+|+..+.|..|.|-|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 006282 106 SHRD 109 (652)
Q Consensus 106 s~~~ 109 (652)
+-..
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=7.5e-12 Score=131.27 Aligned_cols=81 Identities=31% Similarity=0.615 Sum_probs=78.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|||||+|++++|++|.++|+..|+|.++++..|+.||+++||||++|.+.++|++|++.||+.++.|++|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 006282 110 P 110 (652)
Q Consensus 110 ~ 110 (652)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=4.5e-13 Score=119.13 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=72.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+.-|||+|||++.||.+|..+|++||+|..|.+++|. +|+|+||||+||.+..+..-|+..|||..|.|+.|+|.-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 4569999999999999999999999999999999996 899999999999999999999999999999999999974
No 103
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.7e-11 Score=97.75 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=73.1
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
..+.|||+|||+.+|.|+..++|.+||.|..++|=... ..+|.|||.|++..+|.+|++.|+|..++++.|.|-+.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34579999999999999999999999999999986653 3588999999999999999999999999999999999886
Q ss_pred HHH
Q 006282 390 KEE 392 (652)
Q Consensus 390 ~~~ 392 (652)
.+.
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 543
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=117.98 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=77.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
..+=++|||..|+++++|.+|+..|+.||.|+.|+|+.|. +|+++|||||+|.+..+-..|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3456789999999999999999999999999999999995 999999999999999999999999999999999999997
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
-.-.
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6643
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.25 E-value=5.1e-10 Score=118.37 Aligned_cols=167 Identities=15% Similarity=0.016 Sum_probs=125.0
Q ss_pred eeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchh
Q 006282 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198 (652)
Q Consensus 120 lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~ 198 (652)
+-+++++.+.++.+++++|... .|.+..+..+. .+...|-++|.|....++.+|+.+ |.+..-++.+.+...-....
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 6678889999999999999876 56666666663 444588999999999999999976 44444455555543321110
Q ss_pred --------hHH------------------H-------hhccCcceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeeCC
Q 006282 199 --------RET------------------V-------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDG 244 (652)
Q Consensus 199 --------~~~------------------~-------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-~~i~~~~ 244 (652)
... . .......+|||..||..+++.++.++|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 000 0 00112246999999999999999999999888887 6666778
Q ss_pred CCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccch
Q 006282 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288 (652)
Q Consensus 245 ~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 288 (652)
+++.++.|||.|..++++..|...-+...+..+.|.|..+.++.
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 88999999999999988888887777778888899998876653
No 106
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=103.23 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=73.9
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.+++|||+||+..++||.|.++|+++|+|..|.+=.|. +-..=|||||+|.+.++|..|++.++|..++.++|.+.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999776665 44567999999999999999999999999999999999987
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
--.
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 543
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=5.3e-11 Score=94.57 Aligned_cols=74 Identities=39% Similarity=0.722 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+..+ ++.|+|||.|.+.++|..|++.+++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998765 6789999999999999999999999999999998864
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.4e-11 Score=94.15 Aligned_cols=70 Identities=44% Similarity=0.763 Sum_probs=65.4
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 316 V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
|+|||..+++++|+++|+.||.|..+++..+. ++.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999998876 58889999999999999999999999999999998873
No 109
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.7e-12 Score=114.79 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=80.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++||||+|-.+|+|..|...|-+||.|++|.+..|..+++.+|||||+|...|||..|++.||..++.||.|||.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc
Q 006282 107 HRDP 110 (652)
Q Consensus 107 ~~~~ 110 (652)
....
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8653
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.4e-11 Score=128.04 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=106.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
.-+..+|+|-|||.+|++++|+++|+.||.|.+|+-.+. ..|..||+|.+..+|++|+++||+..|.|+.|+.-.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 345789999999999999999999999999999766543 448999999999999999999999999999987322
Q ss_pred ccCCcc--------------------cccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEE
Q 006282 106 SHRDPS--------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 165 (652)
Q Consensus 106 s~~~~~--------------------~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F 165 (652)
+.+... .-......+|+- |++..+..-+..+|+-+|.+.. .. ++.-+..-|+.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----ccchhhhhhhhh
Confidence 211100 000112234433 8887777666667777776644 21 222222567888
Q ss_pred cCHHHHHHHHHHhcCceecCeeeeec
Q 006282 166 ENKESAQNAIDKLNGMLINDKQVFVG 191 (652)
Q Consensus 166 ~t~e~A~~Ai~~lng~~l~g~~~~v~ 191 (652)
.+..++..+.... |+.+.+......
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~t 245 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVIT 245 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceEE
Confidence 8888875555433 666666554443
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=8.8e-11 Score=93.29 Aligned_cols=74 Identities=41% Similarity=0.719 Sum_probs=69.8
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777899999999999999999999999999999999874
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=9.3e-11 Score=88.23 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=51.6
Q ss_pred HHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 328 L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
|+++|++||+|+++++..+. +++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998874 589999999999999999999999999999999985
No 113
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-11 Score=112.38 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||++|.++++|.-|...|-+||.|+.|.+..|. +++.||||||+|.-.|+|..|+..||+..+.|+.|+|++++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46789999999999999999999999999999999884 78899999999999999999999999999999999999998
Q ss_pred cHHH
Q 006282 389 RKEE 392 (652)
Q Consensus 389 ~~~~ 392 (652)
+..-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7643
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=6.2e-11 Score=124.43 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=79.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+++||+|||+++++++|.++|+..|.|.+++++.|. +|+++|||||+|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999885 8999999999999999999999999999999999999999876
Q ss_pred HHHHH
Q 006282 391 EERRA 395 (652)
Q Consensus 391 ~~r~~ 395 (652)
..+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65543
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=1e-10 Score=87.97 Aligned_cols=56 Identities=30% Similarity=0.688 Sum_probs=51.4
Q ss_pred HHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 46 LYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 46 L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
|+++|++||+|.+|++.++. .++|||+|.+.++|++|++.||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998765 479999999999999999999999999999999986
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=8.2e-10 Score=118.58 Aligned_cols=111 Identities=21% Similarity=0.346 Sum_probs=90.7
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
..+++|||+.|+.++++.||.++|+.||.|.+|+++.. ++||||+..+..+|.+|+.+|+...+.++.+.+.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 34578999999999999999999999999999998854 7899999999999999999999999999999999998
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhh
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~ 334 (652)
.+..+. +++..++ ..+=|.-||++--.++|+.+++.
T Consensus 494 g~G~ks-e~k~~wD------------~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 494 GKGPKS-EYKDYWD------------VELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cCCcch-hhhhhhh------------cccCeeEeehHhcCHHHHHhhhh
Confidence 887665 4444333 23556667876544446666543
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2e-10 Score=90.64 Aligned_cols=60 Identities=25% Similarity=0.534 Sum_probs=53.6
Q ss_pred HHHHHHHhh----hcCCeeEEE-EecC-CC--CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 325 DEKLKELFS----EFGTITSCK-VMRD-PS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 325 e~~L~~~F~----~fG~I~~v~-i~~~-~~--g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
+++|+++|+ .||.|.++. |..+ .+ |.++|||||+|.+.++|.+|+..|||+.+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 5544 34 889999999999999999999999999999999976
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=115.24 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=121.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC----CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVG----QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G----~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
--.|.+++||.++++.++.++|..-- -+..|-.++ +-.+|.+|-|||.|..+++|..||.+ |...+.-|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 45788999999999999999996322 223343333 23578899999999999999999984 5555666677665
Q ss_pred cccCC-----------------------------cccccCCCcceeecCCCccccHHHHHhhhccCC-Ce--eEEEEeeC
Q 006282 105 YSHRD-----------------------------PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NI--LSCKIATD 152 (652)
Q Consensus 105 ~s~~~-----------------------------~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I--~~~~v~~~ 152 (652)
.|... -..+.....+|.+++||++.+.++|.++|..|- .| ..+.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 54310 011223367899999999999999999999886 23 34778888
Q ss_pred CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeee
Q 006282 153 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190 (652)
Q Consensus 153 ~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v 190 (652)
..|...|-|||+|.+.|+|..|..+.+.+....+.+.|
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 89999999999999999999999988777765555444
No 119
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=8e-11 Score=99.65 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=77.1
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...+..|||.++..+.++++|.+.|..||+|+.+.+-.|. +|..+|||+|+|.+.++|.+|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3457789999999999999999999999999999998775 899999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
.-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8654
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.3e-11 Score=133.86 Aligned_cols=234 Identities=18% Similarity=0.140 Sum_probs=186.7
Q ss_pred CCCccEEEEcCCCCCCCHH-HHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 26 QFLTTSLYVGDLDFNVTDS-QLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~-~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+.....+++.++-+..... ..+..|..+|.|..|++........+-.++++.++...+++.|.. ..+.-+.++.+.+.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 3445677888887777665 578899999999999987643333444489999999999999998 67777888888887
Q ss_pred cccCCcccccCC--------CcceeecCCCccccHHHHHhhhccCCCeeEEEEe-eCCCCCcccEEEEEEcCHHHHHHHH
Q 006282 105 YSHRDPSIRKSG--------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAI 175 (652)
Q Consensus 105 ~s~~~~~~~~~~--------~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~-~~~~g~skG~afV~F~t~e~A~~Ai 175 (652)
.+...+...... ..++|+.||+..+.+.+|.+.|..+|.+..+.+. ....+.-+|+|||.|..++++.+|+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 776554332222 2358999999999999999999999988777666 3357778999999999999999999
Q ss_pred HHhcCceecCeeeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEe
Q 006282 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255 (652)
Q Consensus 176 ~~lng~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~ 255 (652)
.....+.+. ...|+|+|.|+..|+++++.+|..+|.+++..+....+|+.+|-++|.
T Consensus 727 ~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~ 783 (881)
T KOG0128|consen 727 AFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVD 783 (881)
T ss_pred hhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceecc
Confidence 764444432 234899999999999999999999999999999888999999999999
Q ss_pred eCCHHHHHHHHHHHCCCccCCceEEEEc
Q 006282 256 FENADDAAKAVEALNGKKFDDREWYVGK 283 (652)
Q Consensus 256 f~~~~~A~~Ai~~l~~~~~~g~~l~v~~ 283 (652)
|.+..++..++...+...+..+.+.+..
T Consensus 784 y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 784 YNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CCCcchhhhhcccchhhhhhhcCccccc
Confidence 9999999998876666555544444433
No 121
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.6e-11 Score=111.18 Aligned_cols=153 Identities=24% Similarity=0.358 Sum_probs=125.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
++...++|||+||...|+|+-|.|+|-+.|+|..|.|..++.. +-+ ||||+|.+.-+..-|++-+|+..+.++++.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 3456789999999999999999999999999999988777553 333 99999999999999999999999999999885
Q ss_pred cccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceec
Q 006282 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (652)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~ 184 (652)
+-....- .-|+..++++.++..|+..|.+..+++..+.+|.++.++|+.+--....-.++....++...
T Consensus 83 ~r~G~sh-----------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 83 LRCGNSH-----------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccCCCc-----------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 4321100 12777889999999999999999999999988999999999888777777777766666554
Q ss_pred Ceeeee
Q 006282 185 DKQVFV 190 (652)
Q Consensus 185 g~~~~v 190 (652)
-+++.+
T Consensus 152 ~~~~~~ 157 (267)
T KOG4454|consen 152 QKKVTI 157 (267)
T ss_pred CCCccc
Confidence 444444
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3e-10 Score=89.70 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=56.2
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEeeCCC--CCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 43 DSQLYDLFS----QVGQVLSVR-VCRDLST--RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 43 e~~L~~~Fs----~~G~V~~i~-v~~d~~t--~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
+++|+++|+ .||.|.+|. |..|+.+ ++++|||||.|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777776 899999999999999999999999999999999976
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.99 E-value=4.2e-10 Score=105.81 Aligned_cols=169 Identities=27% Similarity=0.439 Sum_probs=129.7
Q ss_pred EEecCCCCCCCHHH---HHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccc
Q 006282 211 VFVKNLDESTTDED---LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287 (652)
Q Consensus 211 l~V~nlp~~~t~~~---l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 287 (652)
.++.++-..+..+- +...|+.+-.+....+.++..+.-++++|+.|.....-.++-..-+++.+....+....++..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555544444333 256677777777778888888888999999999888777777666777777776666665543
Q ss_pred hHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHH
Q 006282 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 366 (652)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~ 366 (652)
..... ..-+.....||++.|..+++++.|-..|.+|-.....++++|. +|+++||+||.|.++.++.
T Consensus 179 edPsl------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDPSL------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCccc------------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 21110 0111233479999999999999999999999999999999886 8999999999999999999
Q ss_pred HHHHHhcCcEecCeeEEEEecccHH
Q 006282 367 RALAEMNGKMIVSKPLYVAVAQRKE 391 (652)
Q Consensus 367 ~A~~~lng~~~~g~~l~v~~~~~~~ 391 (652)
.|+.+|+|+.++.++|.++-..-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999887554443
No 124
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.4e-10 Score=104.96 Aligned_cols=138 Identities=25% Similarity=0.359 Sum_probs=120.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
..++|||.|+...++++-|.++|=.-|.|..+.|..+.++..+ |+||+|+++.+..-|++-+||..+.+..+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~----- 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR----- 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc-----
Confidence 3467999999999999999999999999999999998888888 9999999999999999999999888776554
Q ss_pred chHHHHHHhHHHHHhhhhcccccccceeeecC----CCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCH
Q 006282 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKN----LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 362 (652)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----lp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~ 362 (652)
+++.++ |+..++++.+...|+.-|.+..+++..+.+|+.+.++|+++.-.
T Consensus 82 --------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 82 --------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred --------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 355666 77889999999999999999999999998999999999999887
Q ss_pred HHHHHHHHHhcCcE
Q 006282 363 EEASRALAEMNGKM 376 (652)
Q Consensus 363 ~~A~~A~~~lng~~ 376 (652)
...-.++....+..
T Consensus 136 ~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 136 CAVPFALDLYQGLE 149 (267)
T ss_pred hcCcHHhhhhcccC
Confidence 77777776555433
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-09 Score=106.57 Aligned_cols=86 Identities=24% Similarity=0.384 Sum_probs=81.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
...++...|||=.|.+-+|.++|.-+||.||+|.++.|+||..|+-|+.||||+|.+.++.++|.=+|++..|+.+.|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 006282 104 MYSHRD 109 (652)
Q Consensus 104 ~~s~~~ 109 (652)
-||+.-
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 998853
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=98.54 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~-G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
......+||..+|..+.|.+|..+|.++ |.|..+|+.|.+.||.|+|||||+|++.+.|+-|-++||+..+.|+.+.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999988 799999999999999999999999999999999999999999999988776
Q ss_pred ccc
Q 006282 105 YSH 107 (652)
Q Consensus 105 ~s~ 107 (652)
+-.
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 533
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.3e-08 Score=105.36 Aligned_cols=152 Identities=22% Similarity=0.340 Sum_probs=115.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCC--Cccc---EEEEEeCCHHHHHHHHhhcCCc------
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR--RSLG---YGYVNYANPADAARALDVLNFT------ 94 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~--~s~g---~AfV~F~~~e~A~~Al~~ln~~------ 94 (652)
+.-++.||||+||++++|+.|...|..||++.-=.-.+....+ ..+| |+|+.|+++.+...-++.+...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 4458899999999999999999999999977432221221111 2345 9999999999988877766421
Q ss_pred -----ccCCceeEee-cccC------CcccccCCCcceeecCCCccccHHHHHhhhc-cCCCeeEEEEeeC-CCCCcccE
Q 006282 95 -----PLNNKSIRIM-YSHR------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATD-GSGQSKGF 160 (652)
Q Consensus 95 -----~i~G~~i~i~-~s~~------~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs-~fG~I~~~~v~~~-~~g~skG~ 160 (652)
.++.+.+.|. |--. +.+..-...++|||++||.-++.++|..+|+ -||.|.-+-|-+| +.+..+|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 1233333332 2221 2233445678999999999999999999999 7999999999999 78889999
Q ss_pred EEEEEcCHHHHHHHHHH
Q 006282 161 GFVQFENKESAQNAIDK 177 (652)
Q Consensus 161 afV~F~t~e~A~~Ai~~ 177 (652)
|-|+|.+...-.+||..
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999974
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=103.79 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=70.5
Q ss_pred ccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-cCcEecCeeEEE
Q 006282 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 384 (652)
Q Consensus 306 ~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l-ng~~~~g~~l~v 384 (652)
.++..-.+|||++|.+.++|.+|+++|.+||+|.+++++.. ++||||+|.|.++|++|..+. |...|+|.+|.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 33445678999999999999999999999999999999876 679999999999999998864 666778999999
Q ss_pred Eeccc
Q 006282 385 AVAQR 389 (652)
Q Consensus 385 ~~~~~ 389 (652)
.|.+.
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99998
No 129
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.87 E-value=1.9e-07 Score=91.59 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcC--CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG--~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
..++||+||-|++|+++|.+....-| .+.+++++.+. +|+|||||+|...+..+.++.++.|-.+.|+|..-.|.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 35899999999999999999998776 46677777664 899999999999999999999999999999986554443
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=6.6e-09 Score=95.32 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=72.9
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhc-CCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEF-GTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~f-G~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
..+||+.+|.-+.+.+|..+|.+| |.|+.+++-++ .+|.|+|||||+|.+.+.|.-|.+.||++.+.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 469999999999999999999999 77888888666 4999999999999999999999999999999999999998887
Q ss_pred H
Q 006282 390 K 390 (652)
Q Consensus 390 ~ 390 (652)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 6
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.81 E-value=4.7e-09 Score=98.86 Aligned_cols=154 Identities=22% Similarity=0.329 Sum_probs=123.0
Q ss_pred HhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhhHHHhhccCcceEEec
Q 006282 135 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK 214 (652)
Q Consensus 135 ~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~ 214 (652)
...|+.+-.+...+++.+..+.-.+++|+.|.....-.++-..-+++++....|++.-...........-....-.||.+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcg 196 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCG 196 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecc
Confidence 56777777777788888877788999999999888877777666777776665665544444333333334555679999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccch
Q 006282 215 NLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288 (652)
Q Consensus 215 nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 288 (652)
.|..+++++.|...|.+|-.-...++++| .+|+++||+||.|.+..++..|+..|+++.++.+.+.+.....+.
T Consensus 197 dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999988888888888 579999999999999999999999999999999988776555444
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.3e-08 Score=100.18 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc-CCcccCCceeEeec
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIRIMY 105 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l-n~~~i~G~~i~i~~ 105 (652)
...++|||++|-..++|.+|+++|-+||.|.+|++.... ++|||+|.+.++|++|.++. |...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 457899999999999999999999999999999998753 49999999999999998754 56778999999999
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
...
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.6e-09 Score=100.79 Aligned_cols=86 Identities=30% Similarity=0.459 Sum_probs=79.9
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
..++...|||--|.+-+++++|.-+|+.||.|.+|.|++|. +|-|-.||||+|.+.+++++|.-.|.+..|+.++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567789999999999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred ecccHHH
Q 006282 386 VAQRKEE 392 (652)
Q Consensus 386 ~~~~~~~ 392 (652)
|+++...
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9987644
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.2e-08 Score=111.69 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=135.6
Q ss_pred ccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 205 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...+++||++||+..+++.+|+..|..+|.|.++.|....-+.-.-|+||.|.+...+..|+..+.+..|....+.+...
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34567899999999999999999999999999999987765666669999999999999999888888887665555554
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~ 364 (652)
..+ ....+.++|++|..++....|...|..||.|..|.+-.. --|++|.|.+...
T Consensus 449 ~~k--------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~ 503 (975)
T KOG0112|consen 449 QPK--------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPA 503 (975)
T ss_pred ccc--------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCcc
Confidence 332 123456999999999999999999999999998776433 3499999999999
Q ss_pred HHHHHHHhcCcEecC--eeEEEEecccH
Q 006282 365 ASRALAEMNGKMIVS--KPLYVAVAQRK 390 (652)
Q Consensus 365 A~~A~~~lng~~~~g--~~l~v~~~~~~ 390 (652)
|..|++.|.|..|++ +++.|.|+...
T Consensus 504 aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 504 AQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred chhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999999999985 77888888754
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.3e-07 Score=98.28 Aligned_cols=162 Identities=17% Similarity=0.296 Sum_probs=113.4
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCCCcce---eEEEeeCCHHHHHHHHHHHCCCccCCce
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKC---FGFVNFENADDAAKAVEALNGKKFDDRE 278 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~g~~~g---~~fV~f~~~~~A~~Ai~~l~~~~~~g~~ 278 (652)
.-++.|||++||++++|+.|...|..||.+.. ..... ..-..+| |.|+-|+++.++...+.++.. ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 44567999999999999999999999997652 22211 1223566 999999999999888776654 3333
Q ss_pred EEEEccccchHHH-HHH---h-HHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhh-hcCCeeEEEEecC-CCCCC
Q 006282 279 WYVGKAQKKSERE-QEL---K-GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRD-PSGIS 351 (652)
Q Consensus 279 l~v~~a~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~-~fG~I~~v~i~~~-~~g~s 351 (652)
++........... ..+ . ...+-.......-.+.++|||++||--++.++|-.+|+ -||.|..+-|-.| +-+..
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 3332222111000 000 0 00000001112234567899999999999999999999 7999999999998 56778
Q ss_pred ccEEEEEeCCHHHHHHHHHH
Q 006282 352 KGSGFVAFSTPEEASRALAE 371 (652)
Q Consensus 352 ~g~afV~F~s~~~A~~A~~~ 371 (652)
+|-|-|+|.+..+=.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999984
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=5e-08 Score=101.19 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=74.0
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...++||||.+|...+...+|+.+|++||.|+..+|+.+. +--.++|+||++.+.++|.++|..||...++|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457899999999999999999999999999999999875 233589999999999999999999999999999999987
Q ss_pred ccc
Q 006282 387 AQR 389 (652)
Q Consensus 387 ~~~ 389 (652)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 654
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1e-07 Score=92.34 Aligned_cols=79 Identities=30% Similarity=0.508 Sum_probs=75.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+.|+|.||+..|++++|+++|..||.++.+-+.+++.|.|.|.|-|.|...++|..|++.+||..++|+.+.+.+....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999877654
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=8.2e-08 Score=102.42 Aligned_cols=83 Identities=30% Similarity=0.449 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS---TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~---t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
-+.++.|||+||+++++|+.|...|..||+|.+|+|+.... .++-..|+||-|-+..||++|+++|++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44578999999999999999999999999999999986533 245668999999999999999999999999999999
Q ss_pred eecccC
Q 006282 103 IMYSHR 108 (652)
Q Consensus 103 i~~s~~ 108 (652)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999974
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.59 E-value=8.9e-08 Score=99.34 Aligned_cols=85 Identities=25% Similarity=0.465 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..-++.|||++|..-+--.+|..||++||+|+..+|+.+..+---+||+||.+.+.++|.+||+.|+.+.+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578899999999999999999999999999999999888777889999999999999999999999999999999998
Q ss_pred ccCCc
Q 006282 106 SHRDP 110 (652)
Q Consensus 106 s~~~~ 110 (652)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87654
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.58 E-value=3.7e-07 Score=75.63 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC----CceeEe
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQV--GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN----NKSIRI 103 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~--G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~----G~~i~i 103 (652)
+||.|+|+|...|.++|.+++... |..--+-+.-|-.++.++|||||+|.++++|.+..+.+++..+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999988653 67777888889899999999999999999999999999987764 567777
Q ss_pred ecccC
Q 006282 104 MYSHR 108 (652)
Q Consensus 104 ~~s~~ 108 (652)
.|++-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77653
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.57 E-value=6.7e-08 Score=97.31 Aligned_cols=169 Identities=24% Similarity=0.308 Sum_probs=135.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...+++|++++.+.+.+.++..+|..+|.+.............++|+++|.|...+.+..|+.......+.++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999998888888776677889999999999999999999944323444444433332
Q ss_pred cCCc--------ccccCCCccee-ecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHH
Q 006282 107 HRDP--------SIRKSGTGNIF-IKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 176 (652)
Q Consensus 107 ~~~~--------~~~~~~~~~lf-V~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~ 176 (652)
+... ........+++ +.+++.+++.++|+..|..+|.|..+++..+ ..+..+|++||.|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2211 12223344455 9999999999999999999999999999988 688999999999999999999997
Q ss_pred HhcCceecCeeeeecccccc
Q 006282 177 KLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 177 ~lng~~l~g~~~~v~~~~~~ 196 (652)
. ....+.++.+.+....++
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred c-ccCcccCcccccccCCCC
Confidence 7 777888887777665554
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.56 E-value=4.2e-08 Score=98.77 Aligned_cols=175 Identities=23% Similarity=0.253 Sum_probs=132.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEee-CCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
..+.+|++++.+.+.+.+...++..+|......+.. .....++|++.+.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 457799999999999998999999999777666655 4678899999999999999999996433344444443332222
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceee-ecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLY-IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
....+. .............++| |++++..+++++|+.+|..+|.|+.+++..++ .|.++|||+|+|.+..
T Consensus 167 ~~~~~~--------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRP--------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccc--------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 211000 0000111222333455 99999999999999999999999999998765 7899999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.+..++.. ....+.+.++.+......
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 888999999998877655
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=5.3e-08 Score=106.73 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=134.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.+...+.+|++|||+..+++.+|+..|..+|.|.+|.+.+-... +-.-||||.|.+...+-+|+-++....|....+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 44567899999999999999999999999999999999776543 34469999999999999999999888887778888
Q ss_pred ecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCcee
Q 006282 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l 183 (652)
.+.+. ....+..+|+++|...+....|...|..||.|..|.+-. ...|+||.|++.+.+..|++.+.+..+
T Consensus 446 glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 446 GLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcC
Confidence 77654 233456799999999999999999999999998877644 456999999999999999999999988
Q ss_pred cC--eeeeeccc
Q 006282 184 ND--KQVFVGHF 193 (652)
Q Consensus 184 ~g--~~~~v~~~ 193 (652)
.+ +.+.|.+.
T Consensus 517 G~P~~r~rvdla 528 (975)
T KOG0112|consen 517 GGPPRRLRVDLA 528 (975)
T ss_pred CCCCcccccccc
Confidence 65 44555444
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.47 E-value=4.2e-07 Score=88.10 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=73.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
-.+.|+|.|||+.|++++|.|+|..||.+..+-|..|. .++|+|.|-|.|...+||++|++.+|+..++|++++|....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999988888887774 58999999999999999999999999999999999887655
Q ss_pred CC
Q 006282 108 RD 109 (652)
Q Consensus 108 ~~ 109 (652)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.43 E-value=5.6e-07 Score=94.36 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=71.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+.....+|||+|||.++++++|+++|..||+|...+|..-...+++-+||||+|.+.++++.|+++ +...+.++.+.|.
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 344567799999999999999999999999999999988665566669999999999999999995 5788899999997
Q ss_pred cccC
Q 006282 105 YSHR 108 (652)
Q Consensus 105 ~s~~ 108 (652)
.-..
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 5443
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=93.51 Aligned_cols=83 Identities=31% Similarity=0.503 Sum_probs=75.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~----~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
++..+||||+||+..++++.|...|..||.|.+++||.-. .-+.+.||||.|-+..+|.+|++.|+|.++.+..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999999643 455688999999999999999999999999999999
Q ss_pred EEecccH
Q 006282 384 VAVAQRK 390 (652)
Q Consensus 384 v~~~~~~ 390 (652)
+.|++..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998743
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2e-06 Score=67.50 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=49.5
Q ss_pred cEEEEcCCCCCCCHHHH----HHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 30 TSLYVGDLDFNVTDSQL----YDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L----~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+.|||.|||.+.+-..| +.++..|| +|.+|. + +.|+|.|.+.+.|++|.+.|++..+-|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999887765 66777886 888872 1 579999999999999999999999999999999
Q ss_pred cccCC
Q 006282 105 YSHRD 109 (652)
Q Consensus 105 ~s~~~ 109 (652)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88544
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=7.1e-07 Score=86.92 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....+++||+|+...+|.+++..+|+.||.|..|.|..|+.++.++|||||+|.+.+.++.|+. ||+..|.|+.|.+.|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999999999999999999999999999999 999999999999986
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
-..
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 543
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=6.1e-06 Score=68.39 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=68.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhc--CCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEec----CeeEEE
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV----SKPLYV 384 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~f--G~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~----g~~l~v 384 (652)
++|.|+|||...|.++|.+++... |....+.+..|- ++.+.|||||.|.+++.|.+..+.++|+.+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999654 677777777774 6678999999999999999999999999886 578888
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888754
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.22 E-value=2.2e-06 Score=89.99 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=68.1
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
....|||+|||.+++.++|+++|..||.|+...|.... .+++.+||||+|.+.+++..|+.+ +-..+++++|.|.-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999999987654 455569999999999999999984 4778899999998655
Q ss_pred c
Q 006282 389 R 389 (652)
Q Consensus 389 ~ 389 (652)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=1.8e-06 Score=90.62 Aligned_cols=70 Identities=27% Similarity=0.439 Sum_probs=63.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
...+|+|-|||..|++++|+.+|+.||+|.+|+.-.. .+|.+||+|.|..+|+.|+++||+..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4457999999999999999999999999999776555 467899999999999999999999999999887
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.07 E-value=4.8e-06 Score=81.12 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=73.5
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
.....+||+|++..++.+++..+|+.||.|..+.|..|. .|.++||+||.|.+.+.+.+|+. |+|..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 445679999999999999999999999999999998886 56799999999999999999999 9999999999999977
Q ss_pred cc
Q 006282 388 QR 389 (652)
Q Consensus 388 ~~ 389 (652)
+-
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 63
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.06 E-value=9.2e-07 Score=89.07 Aligned_cols=154 Identities=23% Similarity=0.357 Sum_probs=119.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc-ccCCceeEeecccC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT-PLNNKSIRIMYSHR 108 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~-~i~G~~i~i~~s~~ 108 (652)
..||++||.+.++.++|..+|...-.-.+-.++. -.|||||++.+..-|.+|++++++. .+.|+++.+..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999997651111111111 1279999999999999999999875 68999999887654
Q ss_pred CcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeee
Q 006282 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188 (652)
Q Consensus 109 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~ 188 (652)
.. ..++.+-|+|+|....++-|..+...||++..|....-.. -.-..-|+|.+.+.++.|+.++++..+.+..+
T Consensus 76 kk----qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 76 KK----QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred HH----HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 32 2234599999999999999999999999999998854321 11223468899999999999999999988888
Q ss_pred eeccccc
Q 006282 189 FVGHFLR 195 (652)
Q Consensus 189 ~v~~~~~ 195 (652)
.+.+..+
T Consensus 150 k~~YiPd 156 (584)
T KOG2193|consen 150 KVGYIPD 156 (584)
T ss_pred hcccCch
Confidence 8876643
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.86 E-value=5e-05 Score=59.80 Aligned_cols=69 Identities=26% Similarity=0.442 Sum_probs=47.7
Q ss_pred eeeecCCCCCCCHHH----HHHHhhhcC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 313 NLYIKNLGDSIDDEK----LKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 313 ~l~V~nlp~~~te~~----L~~~F~~fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
-|||.|||.+.+... |+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|++.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 599999999988764 556666775 677662 468999999999999999999999999999999998
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.83 E-value=4.2e-05 Score=65.04 Aligned_cols=78 Identities=33% Similarity=0.541 Sum_probs=49.1
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcC-----cEecCeeEEEE
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-----KMIVSKPLYVA 385 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng-----~~~~g~~l~v~ 385 (652)
|+.|+|.+++..++.++|++.|+.||.|..|.+.... ..|+|.|.+.+.|.+|+..+.- ..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4679999999999999999999999999999887653 3799999999999999997743 46677778777
Q ss_pred ecccHHHH
Q 006282 386 VAQRKEER 393 (652)
Q Consensus 386 ~~~~~~~r 393 (652)
+-.-.++.
T Consensus 76 vLeGeeE~ 83 (105)
T PF08777_consen 76 VLEGEEEE 83 (105)
T ss_dssp ---HHHHH
T ss_pred ECCCHHHH
Confidence 76554443
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.70 E-value=1e-05 Score=81.68 Aligned_cols=155 Identities=23% Similarity=0.436 Sum_probs=121.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCc-cCCceEEEEcccc
Q 006282 209 NNVFVKNLDESTTDEDLKKIFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGKAQK 286 (652)
Q Consensus 209 ~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~-~~g~~l~v~~a~~ 286 (652)
+.+|++||.+.++..++..+|...-. ...-++++ .||+||.+.+..-|.+|++.++++. +.|+.+.+...-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35899999999999999999987532 12222322 4699999999999999999998764 6788877766554
Q ss_pred chHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEe-cCCCCCCccEEEEEeCCHHHH
Q 006282 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM-RDPSGISKGSGFVAFSTPEEA 365 (652)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~-~~~~g~s~g~afV~F~s~~~A 365 (652)
+..+. +.+-|+|+|.-.-++-|..+...||+++.|... .+.. .-..-|+|.+.+.+
T Consensus 76 kkqrs--------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQRS--------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQH 132 (584)
T ss_pred HHHHh--------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHH
Confidence 44332 237899999999999999999999999999754 3321 22345789999999
Q ss_pred HHHHHHhcCcEecCeeEEEEecccHHH
Q 006282 366 SRALAEMNGKMIVSKPLYVAVAQRKEE 392 (652)
Q Consensus 366 ~~A~~~lng~~~~g~~l~v~~~~~~~~ 392 (652)
..|+..++|..+....+.|.+....+.
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhh
Confidence 999999999999999999988765543
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.69 E-value=2.6e-05 Score=78.21 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=121.7
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC----CCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 210 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
.|.|.||.+.++.+++..+|+..|.|.++.++...+ ......|||.|.+..++..|. .|....+-++.|.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 688999999999999999999999999999886422 344668999999999998887 588888888888887765
Q ss_pred cchHHHH-HHh---HHHH--------------------Hhhhhcc------------ccc--ccceeeecCCCCCCCHHH
Q 006282 286 KKSEREQ-ELK---GQFE--------------------QAMKETV------------DKF--QGLNLYIKNLGDSIDDEK 327 (652)
Q Consensus 286 ~~~~~~~-~~~---~~~~--------------------~~~~~~~------------~~~--~~~~l~V~nlp~~~te~~ 327 (652)
....... .+. .... ....... .+. -..+++|.+|...|...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 4322111 110 0000 0000000 000 124599999999999999
Q ss_pred HHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 328 L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+.+.|..+|+|...++.-.. ..-+|-|.|........|+. ++|+.+.-....+.+
T Consensus 168 ~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred hhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 99999999999988776443 23467799998888888887 777766533333333
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.69 E-value=7.6e-05 Score=63.51 Aligned_cols=60 Identities=28% Similarity=0.395 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
++.|+|.+++.+++.++|+++|+.||.|..|.+.++.. .|||.|.+.++|++|++.+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 36799999999999999999999999999999877643 6999999999999999987543
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.67 E-value=0.0024 Score=63.44 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=63.7
Q ss_pred cceEEecCCCCCCCHHHHHHHhccCCC--eeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 208 FNNVFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 208 ~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
.-++||+||-|.+|++||.+.....|. +.+++++.+ .+|.+|||++|...+..+.++-++-|-.+.+.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 346999999999999999998877773 556666655 57999999999999999999999988888888876665444
Q ss_pred c
Q 006282 285 Q 285 (652)
Q Consensus 285 ~ 285 (652)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.64 E-value=8.5e-05 Score=74.50 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=77.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--------SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~--------~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i 96 (652)
......+|||..|+..+++.+|.++|.+||.|. -|.|.+|+.|++++|-|.|.|.+...|+.|+.-++...|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345578999999999999999999999999873 588999999999999999999999999999999999999
Q ss_pred CCceeEeecccCCc
Q 006282 97 NNKSIRIMYSHRDP 110 (652)
Q Consensus 97 ~G~~i~i~~s~~~~ 110 (652)
.|.+|+|..+...+
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998776543
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.62 E-value=7.1e-05 Score=75.21 Aligned_cols=203 Identities=13% Similarity=0.153 Sum_probs=120.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEee---CCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD---LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d---~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.|.|.||.+++|.++++.||...|+|-+++|+.. ...-..+-.|||.|.+...+..|-. |.++.|-++.|.|...-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8999999999999999999999999999999763 2222345689999999999998887 66677777766553222
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCee
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 187 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~ 187 (652)
.. + +.... .|..+++-..+--....+| |-|.+.-- .-+..++...|.-
T Consensus 88 ~~----------------~--~p~r~---af~~l~~~navprll~pdg-------~Lp~~~~l--t~~nh~p~ailkt-- 135 (479)
T KOG4676|consen 88 DE----------------V--IPDRF---AFVELADQNAVPRLLPPDG-------VLPGDRPL--TKINHSPNAILKT-- 135 (479)
T ss_pred CC----------------C--CccHH---HHHhcCcccccccccCCCC-------ccCCCCcc--ccccCCccceecC--
Confidence 11 0 11111 2322222111110000111 00100000 0011111111111
Q ss_pred eeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHH
Q 006282 188 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267 (652)
Q Consensus 188 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~ 267 (652)
+..+..--... ...-.++++|.+|...|...++.+.|..+|.|....+-. +....+|.+.|....+...|+.
T Consensus 136 ----P~Lp~~~~A~k-leeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 136 ----PELPPQAAAKK-LEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred ----CCCChHhhhhh-hHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH
Confidence 11111100000 111226799999999999999999999999887665433 3334578899999888888886
Q ss_pred HHCCCccC
Q 006282 268 ALNGKKFD 275 (652)
Q Consensus 268 ~l~~~~~~ 275 (652)
+++..+.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 5666655
No 162
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=0.00049 Score=75.11 Aligned_cols=19 Identities=16% Similarity=0.564 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHhccCCeEE
Q 006282 40 NVTDSQLYDLFSQVGQVLS 58 (652)
Q Consensus 40 ~vte~~L~~~Fs~~G~V~~ 58 (652)
+++++++.++|...|.=.+
T Consensus 82 ~ls~~e~~~~F~~~~~dmn 100 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMGEDMN 100 (1102)
T ss_pred hccHHHHHHHHHHHhhhcc
Confidence 3566666666666654333
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00015 Score=69.29 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeE
Q 006282 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 340 (652)
Q Consensus 261 ~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~ 340 (652)
-|..|...|++....++.+.|.++.++ .|||.||...++-+.|...|+.||.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccch
Confidence 466777788999999999999998652 4999999999999999999999999999
Q ss_pred EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 341 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 341 v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
..+..|..++..+-++|.|...-.|.+|+...+-.-|.
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 99999999999999999999999999999977544443
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00025 Score=74.64 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred ccceeeecCCCCCCC------HHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec-CeeE
Q 006282 310 QGLNLYIKNLGDSID------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPL 382 (652)
Q Consensus 310 ~~~~l~V~nlp~~~t------e~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~-g~~l 382 (652)
-..+|+|.|+|---. ..-|.++|+++|.|..+.+..++.|.++||.|++|.+..+|..|++.+||+.++ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345799999985221 245678999999999999998998889999999999999999999999999998 4666
Q ss_pred EEEec
Q 006282 383 YVAVA 387 (652)
Q Consensus 383 ~v~~~ 387 (652)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66643
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.36 E-value=0.00016 Score=72.62 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=72.4
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeE--------EEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~--------v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
....+|||.+|++.+++.+|.++|..+|.|.. +.|.+| +++.+||-|.|.|.+...|+.|+.-++++.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34567999999999999999999999998865 334444 378999999999999999999999999999999
Q ss_pred eeEEEEecccHH
Q 006282 380 KPLYVAVAQRKE 391 (652)
Q Consensus 380 ~~l~v~~~~~~~ 391 (652)
..|.|.++..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999888664
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.36 E-value=0.00037 Score=68.72 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=64.4
Q ss_pred CCccEEEEcCCCCCCCHHH----H--HHHHhccCCeEEEEEEeeCCCCCcc-cEE--EEEeCCHHHHHHHHhhcCCcccC
Q 006282 27 FLTTSLYVGDLDFNVTDSQ----L--YDLFSQVGQVLSVRVCRDLSTRRSL-GYG--YVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~----L--~~~Fs~~G~V~~i~v~~d~~t~~s~-g~A--fV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
-...-+||-+|++.+-.++ | .++|.+||+|..|-|-+......|. +.+ ||.|.+.|||.+|+.+.++..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999999886555 3 7899999999988776653222222 224 99999999999999999999999
Q ss_pred CceeEeecccC
Q 006282 98 NKSIRIMYSHR 108 (652)
Q Consensus 98 G~~i~i~~s~~ 108 (652)
||.|+..+...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999987553
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00043 Score=50.82 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al 88 (652)
+.|-|.+.+.+.. ++++++|+.||.|..+.+-. ...++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5788999998855 45556899999999988752 2248999999999999996
No 168
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=9.9e-05 Score=83.05 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=62.3
Q ss_pred HHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHH--HHHHHHHHhhcCC
Q 006282 570 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRSVAQQQANN 636 (652)
Q Consensus 570 ~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~--~~l~~~~~~~~~~ 636 (652)
-+|.|||+||+.++.+.|.+|.||||||||.....+|..|..++.|+..|++|+ +++..|.++..++
T Consensus 2607 e~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qei~Ad 2675 (3015)
T KOG0943|consen 2607 ERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQEIGAD 2675 (3015)
T ss_pred hhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHHhhhH
Confidence 578999999999999999999999999999999999999999999999999999 8999988765443
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.00055 Score=65.50 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=80.4
Q ss_pred HHHHHHHhhcCCcccCCceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEE
Q 006282 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFG 161 (652)
Q Consensus 82 e~A~~Al~~ln~~~i~G~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~a 161 (652)
.-|+.|..+|++...+|+.++|.|+.. ..|+|.||..-++++.+..-|+.||.|....++.|..+...+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 346777778889999999999999875 36999999999999999999999999999999999899999999
Q ss_pred EEEEcCHHHHHHHHHHhc
Q 006282 162 FVQFENKESAQNAIDKLN 179 (652)
Q Consensus 162 fV~F~t~e~A~~Ai~~ln 179 (652)
+|.|...-.|.+|...++
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998764
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.10 E-value=0.00045 Score=70.52 Aligned_cols=67 Identities=22% Similarity=0.450 Sum_probs=57.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEee---CCCCC----------cccEEEEEeCCHHHHHHHHhhcC
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD---LSTRR----------SLGYGYVNYANPADAARALDVLN 92 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d---~~t~~----------s~g~AfV~F~~~e~A~~Al~~ln 92 (652)
.-++++|.+-|||.+-.-+.|.++|+.+|.|++||||.. ....+ ..-+|+|+|...+.|.+|.+.+|
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347999999999999888999999999999999999987 22111 14589999999999999999775
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.00 E-value=0.0014 Score=48.15 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=41.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~ 369 (652)
+.|-|.+.+.+.. +.+..+|..||+|+.+.+-. .+.+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 3577888876654 45666999999999988762 2458999999999999985
No 172
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.99 E-value=0.0035 Score=68.75 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 006282 168 KESAQNAIDKL 178 (652)
Q Consensus 168 ~e~A~~Ai~~l 178 (652)
..++.+|++.+
T Consensus 209 ~~eiIrClka~ 219 (1102)
T KOG1924|consen 209 LQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHH
Confidence 34455555544
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.96 E-value=0.0023 Score=63.25 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=65.3
Q ss_pred ccceeeecCCCCCCCHHH----H--HHHhhhcCCeeEEEEecCC-C-CCCcc-E-EEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 310 QGLNLYIKNLGDSIDDEK----L--KELFSEFGTITSCKVMRDP-S-GISKG-S-GFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~----L--~~~F~~fG~I~~v~i~~~~-~-g~s~g-~-afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
+..-+||-+|+..+-+|+ | .++|.+||.|..+.|-+.. . +...+ + .+|+|.+.++|.++|.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 344589999999887666 2 4899999999999887654 1 11122 2 3999999999999999999999999
Q ss_pred eeEEEEecccHH
Q 006282 380 KPLYVAVAQRKE 391 (652)
Q Consensus 380 ~~l~v~~~~~~~ 391 (652)
+.|+..+.-.|-
T Consensus 193 r~lkatYGTTKY 204 (480)
T COG5175 193 RVLKATYGTTKY 204 (480)
T ss_pred ceEeeecCchHH
Confidence 999999887664
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.90 E-value=0.00049 Score=66.03 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=59.6
Q ss_pred HHHHHHhh-hcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHHHH
Q 006282 326 EKLKELFS-EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396 (652)
Q Consensus 326 ~~L~~~F~-~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~ 396 (652)
++|...|+ +||+|++++|..+-.-.-+|-++|.|...++|.+|+..|||..+.|++|+..+..-.+-+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~ 154 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAI 154 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhh
Confidence 45666666 999999998876654456889999999999999999999999999999999998876655543
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.88 E-value=0.00045 Score=66.29 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=52.6
Q ss_pred HHHHHHHh-ccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 44 SQLYDLFS-QVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 44 ~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++|+.-|+ +||.|.++.||... .-.-.|-+||.|...++|++|++.||+..|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 89999999888753 34667999999999999999999999999999999887765
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.79 E-value=0.0048 Score=51.65 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=52.3
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEE-EecC-------CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee-
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRD-------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP- 381 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~-i~~~-------~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~- 381 (652)
.+.|.|-+.|.. ....|.++|++||+|.+.. +.++ +.-....+.-|+|+++.+|.+|+. .||..+.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999988 5567889999999998875 1111 011235699999999999999998 8999998754
Q ss_pred EEEEecc
Q 006282 382 LYVAVAQ 388 (652)
Q Consensus 382 l~v~~~~ 388 (652)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4465553
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.76 E-value=0.0045 Score=51.83 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=52.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEE-eeC------CCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC-RDL------STRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~-~d~------~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
..+.|.|-+.|++ ....|.+.|++||.|++..-+ ++. ......++..|.|.++.+|.+||. .|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4578999999988 677788999999999887511 100 001122589999999999999999 6999998864
Q ss_pred e-Eeecc
Q 006282 101 I-RIMYS 106 (652)
Q Consensus 101 i-~i~~s 106 (652)
+ -|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45555
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.75 E-value=0.0013 Score=62.99 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=62.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC--------CCcc----cEEEEEeCCHHHHHHHHhhcCCcc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST--------RRSL----GYGYVNYANPADAARALDVLNFTP 95 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t--------~~s~----g~AfV~F~~~e~A~~Al~~ln~~~ 95 (652)
.+-.||+++||+.+.-..|+++|+.||.|-.|-+.....+ +.+. --++|+|.+...|.+..+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999888776555 2222 346799999999999999999999
Q ss_pred cCCce
Q 006282 96 LNNKS 100 (652)
Q Consensus 96 i~G~~ 100 (652)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.0057 Score=59.53 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=62.9
Q ss_pred eeeecCC--CCCCC---HHHHHHHhhhcCCeeEEEEecCCCC--CCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 313 NLYIKNL--GDSID---DEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 313 ~l~V~nl--p~~~t---e~~L~~~F~~fG~I~~v~i~~~~~g--~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
.|.++|. +..++ ++++++.+++||.|..|.|+.++.- ..----||+|...++|.+|+-.|||+.|+|+.+...
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3555555 23444 4588999999999999999876421 012247999999999999999999999999999988
Q ss_pred ecccHHHHH
Q 006282 386 VAQRKEERR 394 (652)
Q Consensus 386 ~~~~~~~r~ 394 (652)
|.+...-+.
T Consensus 363 Fyn~ekfs~ 371 (378)
T KOG1996|consen 363 FYNLEKFSN 371 (378)
T ss_pred eccHHhhhh
Confidence 887655443
No 180
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.00075 Score=71.14 Aligned_cols=77 Identities=29% Similarity=0.397 Sum_probs=62.4
Q ss_pred CcceEEecCCCCCCC------HHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEE
Q 006282 207 KFNNVFVKNLDESTT------DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 280 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t------~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~ 280 (652)
..+.|+|.|+|.--. ..-|..+|+++|++....+..+..|..+||.|++|.+..+|..|++.+||+.+....-.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 446788999884221 23467789999999999999898888999999999999999999999999998765444
Q ss_pred EEc
Q 006282 281 VGK 283 (652)
Q Consensus 281 v~~ 283 (652)
..+
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 333
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.58 E-value=0.0081 Score=53.37 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=47.1
Q ss_pred HHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHH
Q 006282 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392 (652)
Q Consensus 327 ~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 392 (652)
+|-+.|+.||+|.=+|+..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+.-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 77888999999998888765 58999999999999998 999999999999998876543
No 182
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.51 E-value=0.0017 Score=66.56 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=57.7
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC---C---CCC--------CccEEEEEeCCHHHHHHHHHHhcC
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD---P---SGI--------SKGSGFVAFSTPEEASRALAEMNG 374 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~---~---~g~--------s~g~afV~F~s~~~A~~A~~~lng 374 (652)
.++++|.+-|||.+-.-+.|.++|+.+|.|.+|+|..- + .|. .+-||||+|...+.|.+|.+.+|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999999999999865 2 222 267899999999999999998765
Q ss_pred cE
Q 006282 375 KM 376 (652)
Q Consensus 375 ~~ 376 (652)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.34 E-value=0.008 Score=53.41 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=52.7
Q ss_pred CccEEEEcCCCCC-----CCH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC
Q 006282 28 LTTSLYVGDLDFN-----VTD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 28 ~~~sL~V~nLp~~-----vte----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G 98 (652)
+-.||.|.=+.++ .-. .+|.+.|+.||.|.-||+..+ .-+|.|.+-++|.+|++ +++..|.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 4556766655511 222 257888999999998888765 46999999999999999 89999999
Q ss_pred ceeEeecccC
Q 006282 99 KSIRIMYSHR 108 (652)
Q Consensus 99 ~~i~i~~s~~ 108 (652)
+.|+|.....
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999986544
No 184
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.25 E-value=0.0026 Score=60.94 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=59.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC---------CCCcc----EEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------GISKG----SGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~---------g~s~g----~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
-.||+.+||+.++...||++|+.||.|-.|.+-.... |..++ -|+|+|.+-..|......|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 3699999999999999999999999999998875531 22222 3689999999999999999999999
Q ss_pred Cee
Q 006282 379 SKP 381 (652)
Q Consensus 379 g~~ 381 (652)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.93 E-value=0.034 Score=44.14 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=41.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~ 93 (652)
.-..||+ +|..+...||+++|+.||.|. |.-+.| | -|||...+.+.|..|+..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 4566777 999999999999999999883 333333 2 699999999999999998864
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.86 E-value=0.036 Score=41.75 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=45.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhc---CCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEF---GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~f---G~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
..|+|++++ +++-++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 369999995 58888999999999 246788888884 4899999999999999754
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.77 E-value=0.04 Score=48.17 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCccEEEEcCCCCCC-CHHHH---HHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 26 QFLTTSLYVGDLDFNV-TDSQL---YDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~v-te~~L---~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
..+.++|.|+=|..++ ..+|| ...++.||+|.+|..|-. -.|.|.|.+..+|-+|+..+.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4568999999998876 34444 445688999999999853 2599999999999999998764 6678999
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
++.|-++
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9999875
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.61 E-value=0.034 Score=59.52 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=67.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhh-cCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe---cCeeEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~-fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~---~g~~l~v 384 (652)
..+..|||.||---+|.-.|+.++.+ .|.|++. +|.. =+.-|||.|.+.++|...+.+|||..+ +.|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34667999999999999999999994 5666766 4432 134699999999999999999999988 5799999
Q ss_pred EecccHHHHHHH
Q 006282 385 AVAQRKEERRAR 396 (652)
Q Consensus 385 ~~~~~~~~r~~~ 396 (652)
.|+...+....+
T Consensus 517 df~~~deld~hr 528 (718)
T KOG2416|consen 517 DFVRADELDKHR 528 (718)
T ss_pred eecchhHHHHHh
Confidence 999887766443
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.97 E-value=0.063 Score=47.01 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=56.2
Q ss_pred cccceeeecCCCCCC----CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 309 FQGLNLYIKNLGDSI----DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~----te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
.+-.+|.|+-|..++ +-..+-..++.||.|.+|.... +..|.|.|.+..+|-+|+.++.. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 344567777666555 2234555668899999998763 45799999999999999998887 667888888
Q ss_pred Eeccc
Q 006282 385 AVAQR 389 (652)
Q Consensus 385 ~~~~~ 389 (652)
+|-.+
T Consensus 157 sWqqr 161 (166)
T PF15023_consen 157 SWQQR 161 (166)
T ss_pred ecccc
Confidence 88654
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.95 E-value=0.064 Score=52.46 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=60.1
Q ss_pred CccEEEEcCC--CCCCC---HHHHHHHHhccCCeEEEEEEeeCCCCCc-ccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 28 LTTSLYVGDL--DFNVT---DSQLYDLFSQVGQVLSVRVCRDLSTRRS-LGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 28 ~~~sL~V~nL--p~~vt---e~~L~~~Fs~~G~V~~i~v~~d~~t~~s-~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
++..|.++|+ +-.+. |+++.+-+.+||+|..|.|+.+...-.. .--.||+|...++|.+|+-.||+..|.|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444666665 23343 4567888999999999998877432111 1237999999999999999999999999999
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
+..|-+-
T Consensus 360 ~A~Fyn~ 366 (378)
T KOG1996|consen 360 SACFYNL 366 (378)
T ss_pred eheeccH
Confidence 8877553
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.79 E-value=0.67 Score=45.88 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=113.9
Q ss_pred cceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--------CCCcceeEEEeeCCHHHHHHHHH----HHC--CCc
Q 006282 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENADDAAKAVE----ALN--GKK 273 (652)
Q Consensus 208 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------~g~~~g~~fV~f~~~~~A~~Ai~----~l~--~~~ 273 (652)
.+.|...|+..+++-..+-.-|-+||.|++|.++.+. +.+......+.|-+.+.+..... .|. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3568889999999999999999999999999998765 33455678999999988775433 222 233
Q ss_pred cCCceEEEEccccchHH----HH--HHhH-H-HHHhhhhcccccccceeeecCCCCCCCHHHHHHHhh--------hcCC
Q 006282 274 FDDREWYVGKAQKKSER----EQ--ELKG-Q-FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS--------EFGT 337 (652)
Q Consensus 274 ~~g~~l~v~~a~~~~~~----~~--~~~~-~-~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~--------~fG~ 337 (652)
+....|.+.+..-+... .. .... . .....-+-......++|.|.--.+...++-+.+.+. +| .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RY-V 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRY-V 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceE-E
Confidence 55666666665421110 00 0000 0 011111223344556777765433334443333331 34 5
Q ss_pred eeEEEEecCC---CCCCccEEEEEeCCHHHHHHHHHHhc--CcEec-CeeEEEEecccH
Q 006282 338 ITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMN--GKMIV-SKPLYVAVAQRK 390 (652)
Q Consensus 338 I~~v~i~~~~---~g~s~g~afV~F~s~~~A~~A~~~ln--g~~~~-g~~l~v~~~~~~ 390 (652)
+++|.++... +.-++.||.++|-+..-|...++.+. +...+ .+..+|.+....
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 7888888543 34568899999999999999888765 44443 677788876644
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.44 E-value=0.036 Score=52.04 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhc-cCCe---EEEEEEeeCCC-C-CcccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQV---LSVRVCRDLST-R-RSLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~-~G~V---~~i~v~~d~~t-~-~s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
.....|.||+||+++||+++.+.++. ++.- ..+.-+.+... . ....-|||.|.+.+++....+.+++..|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 34579999999999999999997776 6655 33332222221 1 12356999999999999999999886653
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.15 E-value=0.082 Score=49.78 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=46.9
Q ss_pred CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc--CcEecCeeEEEEeccc
Q 006282 324 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVAVAQR 389 (652)
Q Consensus 324 te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln--g~~~~g~~l~v~~~~~ 389 (652)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|.+|...++ +..+.|+.++|.+++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999999888764 4468999999999999999999 9999999999999853
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.04 E-value=0.2 Score=39.88 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=40.7
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln 373 (652)
..||. .|.+|-..||.++|++||.|. |..+.|. .|||.....+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 45665 999999999999999999875 5555553 69999999999999998775
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.89 E-value=0.14 Score=48.24 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=46.7
Q ss_pred CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC--CcccCCceeEeecccCC
Q 006282 42 TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 42 te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln--~~~i~G~~i~i~~s~~~ 109 (652)
..+.|+++|+.++.+.++.+.+ |.+=..|.|.+.++|.+|...|+ +..|.|+.++|.+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999998887775 33458999999999999999999 89999999999998543
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.80 E-value=0.32 Score=36.66 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=42.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc----CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQV----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~----G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l 91 (652)
..|+|+++. +++.++|+.+|+.| ++ ..|.=+-|. .|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999996 68999999999998 53 355555553 3779999999999999864
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.68 E-value=0.046 Score=57.06 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=65.2
Q ss_pred CCCCccEEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDFNV-TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~v-te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.....+.|-+.-.|... +-++|..+|.+||.|..|.|-.. .--|.|.|.+..+|-+|.. .....|+++.|++
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEE
Confidence 34456788888888776 78899999999999999988443 1258999999999977777 5788999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|.+..+
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 9998754
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.51 E-value=0.93 Score=38.81 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=53.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC---ceeEee
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN---KSIRIM 104 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G---~~i~i~ 104 (652)
+..+.+...|+-++-++|..+.+.+- .|..+||.||... ++-.+.+.|.+.++|.......|+..|.. ..++|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 33444444445556666766666653 7889999998654 45689999999999999999999887643 455554
Q ss_pred c
Q 006282 105 Y 105 (652)
Q Consensus 105 ~ 105 (652)
|
T Consensus 91 f 91 (110)
T PF07576_consen 91 F 91 (110)
T ss_pred E
Confidence 4
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.29 E-value=0.049 Score=60.68 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=62.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc--CCceeEeecccC
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL--NNKSIRIMYSHR 108 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i--~G~~i~i~~s~~ 108 (652)
..++.|.+-+.+-.-|..+|+.||.|.+++..||-. .|.|.|.+.+.|..|++.+.+.++ .|-+.+|++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445666677788888999999999999999988744 799999999999999999999875 688999999875
Q ss_pred C
Q 006282 109 D 109 (652)
Q Consensus 109 ~ 109 (652)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 200
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.98 E-value=0.08 Score=56.79 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc---CCc
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFS-QVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---NNK 99 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i---~G~ 99 (652)
.....+..|||.||=.-.|+-.|++++. .+|.|.+.++ |++ +..|||.|.+.++|......|++..+ +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3566789999999999999999999998 5677777744 222 23799999999999999999998655 567
Q ss_pred eeEeecccCC
Q 006282 100 SIRIMYSHRD 109 (652)
Q Consensus 100 ~i~i~~s~~~ 109 (652)
.|.|.|...+
T Consensus 513 ~L~adf~~~d 522 (718)
T KOG2416|consen 513 HLIADFVRAD 522 (718)
T ss_pred eeEeeecchh
Confidence 7777665543
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.76 E-value=0.33 Score=47.94 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=51.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
..=|-|-++|+. .-..|..+|++||.|+....- +.-.+-+|.|.+..+|.+||. .|+..|+|..+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 456778888876 567888999999999776433 222589999999999999999 58888888543
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.50 E-value=0.054 Score=54.50 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=62.6
Q ss_pred CccEEEEcCCCCCCC-HHHH--HHHHhccCCeEEEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 28 LTTSLYVGDLDFNVT-DSQL--YDLFSQVGQVLSVRVCRDLSTR---RSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 28 ~~~sL~V~nLp~~vt-e~~L--~~~Fs~~G~V~~i~v~~d~~t~---~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
...-+||-+|+..+. |..| .+.|.+||.|..|.+.++..+- -...-+||.|...+||.+|++..++....|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 345678889988764 4445 4589999999999999876311 122448999999999999999999999999987
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
++.+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7765443
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.35 E-value=3.1 Score=41.34 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=102.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeC-------CCCCcccEEEEEeCCHHHHHHHH----hh
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL-------STRRSLGYGYVNYANPADAARAL----DV 90 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~-------~t~~s~g~AfV~F~~~e~A~~Al----~~ 90 (652)
.|.+...+++|...|+..+++--.+...|-.||+|.+|.++.+. ...+......+-|-+.+.+.... +.
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999876 11233356889999988764432 22
Q ss_pred cC--CcccCCceeEeecccC---------C-c--------------ccccCCCcceeecCCCccccHHHHHh----hhcc
Q 006282 91 LN--FTPLNNKSIRIMYSHR---------D-P--------------SIRKSGTGNIFIKNLDKSIDHKALHD----TFSS 140 (652)
Q Consensus 91 ln--~~~i~G~~i~i~~s~~---------~-~--------------~~~~~~~~~lfV~nLp~~~t~~~L~~----~Fs~ 140 (652)
|+ ...++...+++.|..- + . -..+..++.|.|.= ...++.+++.+ ++..
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~ 166 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKN 166 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhcc
Confidence 22 1345666676655331 0 0 01122333344432 23343333332 2222
Q ss_pred CC----CeeEEEEeeC---CCCCcccEEEEEEcCHHHHHHHHHHhc
Q 006282 141 FG----NILSCKIATD---GSGQSKGFGFVQFENKESAQNAIDKLN 179 (652)
Q Consensus 141 fG----~I~~~~v~~~---~~g~skG~afV~F~t~e~A~~Ai~~ln 179 (652)
-+ -+.++.++.. .....+.||.++|-+...|.+.+..+.
T Consensus 167 ~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 167 SNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 23 2567777654 244567899999999999999988764
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.95 E-value=0.73 Score=48.21 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=64.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC---ceeEee
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN---KSIRIM 104 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G---~~i~i~ 104 (652)
++.|.|--+|..+|-.||..|+..+- .|.+|+++||....+ -...|.|.+.+||....+++|+..|.. -.+++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr--ymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR--YMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce--EEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 88999999999999999999987654 799999999876544 479999999999999999999987744 455555
Q ss_pred ccc
Q 006282 105 YSH 107 (652)
Q Consensus 105 ~s~ 107 (652)
|..
T Consensus 152 ~V~ 154 (493)
T KOG0804|consen 152 YVD 154 (493)
T ss_pred EEE
Confidence 543
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.71 E-value=0.11 Score=54.40 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=59.7
Q ss_pred ceeeecCCCCCC-CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~-te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+.|-+.-.+... +-++|..+|..||+|..|.|-.. .--|.|+|.+..+|-+|.. .++..|+++.|+|.|.+..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 345555555555 55799999999999999988654 3369999999999988887 8999999999999998864
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.38 E-value=1.1 Score=38.42 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred eeecCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 314 LYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 314 l~V~nlp~~~te~~L~~~F~~fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
+.+-..|+.++.++|..+.+.+- .|..++|++|... .+=-+++.|.+.++|..-...+||+.++.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444555666677777777764 5778899988542 46678999999999999999999999874
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.17 E-value=0.11 Score=52.38 Aligned_cols=80 Identities=23% Similarity=0.396 Sum_probs=61.5
Q ss_pred ceeeecCCCCCCCHHHHH---HHhhhcCCeeEEEEecCCC--CC--CccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 312 LNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS--GI--SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~---~~F~~fG~I~~v~i~~~~~--g~--s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
.-+||-+|+..+.++.+. +.|..||.|.+|.+..+.. .. ...-++|+|...++|..||...+|...+|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 447888888877655543 5788999999999888752 11 1223799999999999999999999999988777
Q ss_pred EecccHH
Q 006282 385 AVAQRKE 391 (652)
Q Consensus 385 ~~~~~~~ 391 (652)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7666543
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.12 E-value=0.57 Score=37.01 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHhhhcC-----CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 320 GDSIDDEKLKELFSEFG-----TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 320 p~~~te~~L~~~F~~fG-----~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
-+.++..+|..++..-+ .|-.++|..+ |.||+-.. +.|..++..|++..+.|+++.|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35678888999887764 4556777766 89999976 7899999999999999999999864
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.59 E-value=0.89 Score=48.72 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=58.3
Q ss_pred HHHHhhcCCcccCCceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhcc--CCCeeEEEEeeCCCCCcccEEE
Q 006282 85 ARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS--FGNILSCKIATDGSGQSKGFGF 162 (652)
Q Consensus 85 ~~Al~~ln~~~i~G~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~--fG~I~~~~v~~~~~g~skG~af 162 (652)
..+|.+.-+..++.+-.+|...+ +...|.++.|+.++-.++++.+|+. .-.+.+|.+..+. -.|
T Consensus 151 ~Evlresp~VqvDekgekVrp~~--------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWy 216 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRPNH--------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWY 216 (684)
T ss_pred HHHHhcCCCceeccCccccccCc--------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceE
Confidence 44444444445555544444332 2345788999999999999999987 4478899987642 259
Q ss_pred EEEcCHHHHHHHHHHhc
Q 006282 163 VQFENKESAQNAIDKLN 179 (652)
Q Consensus 163 V~F~t~e~A~~Ai~~ln 179 (652)
|+|+++.||..|.+.|.
T Consensus 217 ITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 217 ITFESDTDAQQAYKYLR 233 (684)
T ss_pred EEeecchhHHHHHHHHH
Confidence 99999999999998763
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.56 E-value=0.6 Score=50.00 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=54.3
Q ss_pred cceeeecCCCCCCCHHHHHHHhhh--cCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--cEecCeeEEEE
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 385 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~--fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng--~~~~g~~l~v~ 385 (652)
.|.|.++-|+..+-.|+++.+|.. +-.+++|.+-.+. -=||+|++..||+.|.+.|.. +.|-||+|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 467889999999999999999975 5678888876653 269999999999999987743 35566665443
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.22 E-value=0.021 Score=62.03 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=79.1
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
....++||+|+...+..+-++.+...+|.|.++.... |||+.|..+.....|+..++...++|..+.+..-.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 3446799999999999999999999999998876543 99999999999999999999999988888776632
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhh
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 333 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~ 333 (652)
..-.......................+-++|+|++...++......|.
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 211111000000000011111111133477777777666655555554
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.81 E-value=1.4 Score=33.84 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=44.3
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 322 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 322 ~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
.++-++++..+..|+ -. +|..|.+| =||.|.+.++|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999994 33 34455444 589999999999999999999998877654
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.51 E-value=0.66 Score=45.94 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=50.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~ 381 (652)
.-|-|-+++..- ..-|..+|++||+|.+..... + -.|-.|.|.+.-+|.+||. .||++|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~--n---gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS--N---GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC--C---CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 457777887653 456788999999999876542 2 3499999999999999998 8999998754
No 214
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=88.57 E-value=24 Score=33.92 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 006282 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (652)
Q Consensus 320 p~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~ 369 (652)
..++++|.|.-.-.+. .--.|.|...+-=...|.++-|+.-..+...+|
T Consensus 17 nrefddekiliqhqka-khfkchichkkl~sgpglsihcmqvhketid~i 65 (341)
T KOG2893|consen 17 NREFDDEKILIQHQKA-KHFKCHICHKKLFSGPGLSIHCMQVHKETIDKI 65 (341)
T ss_pred ccccchhhhhhhhhhh-ccceeeeehhhhccCCCceeehhhhhhhhhhcc
Confidence 3455566554333322 223455544431122556666666555544443
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.35 E-value=0.41 Score=53.69 Aligned_cols=72 Identities=28% Similarity=0.407 Sum_probs=62.8
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec--CeeEEEEecccH
Q 006282 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVAQRK 390 (652)
Q Consensus 314 l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~--g~~l~v~~~~~~ 390 (652)
.++.|..-..+-.-|-.+|+.||.|.+.+..++ -..|.|.|.+.+.|..|+++++|+.+- |-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 567778888899999999999999999998887 337999999999999999999999764 788888888754
No 216
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.22 E-value=0.82 Score=42.91 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=46.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhh-cCCee---EEEEecCC--C-CCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSE-FGTIT---SCKVMRDP--S-GISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~-fG~I~---~v~i~~~~--~-g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
.++.|.|++||+.+|++++.+.+++ ++.-. .+.-.... . -..-.-|+|.|.+.++.......++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3558999999999999999998887 66662 33211111 1 1123469999999999999999999988753
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=3.4 Score=44.77 Aligned_cols=122 Identities=15% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 26 QFLTTSLYVGDLDFN-VTDSQLYDLFSQV----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~-vte~~L~~~Fs~~----G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
...+.+|-|=||.|+ +.-.+|+-+|+.| |.|.+|.||..-. -.+.|....+.|.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF--------------------GkeRM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF--------------------GKERMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh--------------------hHHHhhhhcccCCh
Confidence 567899999999998 7999999999977 6999999987521 23445556677876
Q ss_pred eEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcC
Q 006282 101 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180 (652)
Q Consensus 101 i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng 180 (652)
+.+.-......... .+....+.-.+..++.|+ +...+ --||.|+|.+.+.|....+.+.|
T Consensus 231 ~el~~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq-~~rLk---------YYyAVvecDsi~tA~~vYe~CDG 290 (650)
T KOG2318|consen 231 KELFKPVEEYKESE----------SDDEEEEDVDREKLRQYQ-LNRLK---------YYYAVVECDSIETAKAVYEECDG 290 (650)
T ss_pred hhhccccccCcccc----------cchhhhhhHHHHHHHHHH-hhhhe---------eEEEEEEecCchHHHHHHHhcCc
Confidence 65542221110000 011111111223333332 11111 12799999999999999999999
Q ss_pred ceecCee
Q 006282 181 MLINDKQ 187 (652)
Q Consensus 181 ~~l~g~~ 187 (652)
..+....
T Consensus 291 ~EfEsS~ 297 (650)
T KOG2318|consen 291 IEFESSA 297 (650)
T ss_pred ceecccc
Confidence 8876543
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.91 E-value=2.4 Score=33.44 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhccC-----CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 39 FNVTDSQLYDLFSQVG-----QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 39 ~~vte~~L~~~Fs~~G-----~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..++..+|..++...+ .|-.|+|..+ |+||+-... .|+++++.|++..++|+.++|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 3578888888887653 5778888764 889988654 78899999999999999999874
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.88 E-value=1.9 Score=35.11 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=49.1
Q ss_pred EEEEEcCHHHHHHHHHHhc-CceecCeeeeec--ccccch-hhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCee
Q 006282 161 GFVQFENKESAQNAIDKLN-GMLINDKQVFVG--HFLRKQ-ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 236 (652)
Q Consensus 161 afV~F~t~e~A~~Ai~~ln-g~~l~g~~~~v~--~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~ 236 (652)
|+|+|..++.|.+.++.-. ...+++..+.|. +..... .+-........++|.|+|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L------- 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL------- 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE-------
Confidence 6899999999999986532 233455554443 222211 11111123566789999999999999998764
Q ss_pred EEEEeeCCCC
Q 006282 237 SAVVMRDGDG 246 (652)
Q Consensus 237 ~~~i~~~~~g 246 (652)
.+.+.+..+|
T Consensus 74 eIhFqK~snG 83 (88)
T PF07292_consen 74 EIHFQKPSNG 83 (88)
T ss_pred EEEEecCCCC
Confidence 4455555443
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.34 E-value=3.6 Score=31.59 Aligned_cols=55 Identities=15% Similarity=0.363 Sum_probs=42.6
Q ss_pred cccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeee
Q 006282 128 SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190 (652)
Q Consensus 128 ~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v 190 (652)
.++-++++..++.|+-. +|..|.+| | ||.|.+..+|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999998533 44455444 4 99999999999999999998887766544
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.79 E-value=4.4 Score=42.68 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred CcceeecCCCccccHHHHHhhhccCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecC
Q 006282 117 TGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 185 (652)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g 185 (652)
...|+|-.+|..++..||..++..+- .|..+++++|..+ ++-..++.|.+.++|....+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999988765 6899999996443 44467899999999999999999988753
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=79.95 E-value=2.2 Score=34.85 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHhhcCCc-ccCCceeEeecccCC-------cccccCCCcceeecCCCccccHHHHHhhh
Q 006282 74 GYVNYANPADAARALDVLNFT-PLNNKSIRIMYSHRD-------PSIRKSGTGNIFIKNLDKSIDHKALHDTF 138 (652)
Q Consensus 74 AfV~F~~~e~A~~Al~~ln~~-~i~G~~i~i~~s~~~-------~~~~~~~~~~lfV~nLp~~~t~~~L~~~F 138 (652)
|+|.|.+..-|++-+..-.+. .+.+..++|..+.-. .-...-..++|.|.|||...++++|+|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999854433 345566655432211 01123345679999999999999999864
No 223
>PHA03378 EBNA-3B; Provisional
Probab=79.80 E-value=42 Score=37.47 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=10.3
Q ss_pred hHHHHHHhhhhchhhhhhccC
Q 006282 567 PEQQRTLLGESLYPLVEQLER 587 (652)
Q Consensus 567 ~~~~~~~~g~~~~~~~~~~~~ 587 (652)
|.-+|..-+|++-+.+-.-.|
T Consensus 838 ps~k~~a~~~r~~~~~~~p~p 858 (991)
T PHA03378 838 PSLKKPAALERQAAAGPTPSP 858 (991)
T ss_pred cccccchhhhhhcccCCCCCC
Confidence 334555555555555444333
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.91 E-value=1.4 Score=48.39 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=63.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++||+|+-+.+..+-++.+...+|.|.+++... |||+.|.....+.+|+..++-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 455799999999999999999999999999987654 9999999999999999999998999988887764
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.53 E-value=13 Score=33.70 Aligned_cols=115 Identities=14% Similarity=0.002 Sum_probs=74.1
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhc-cCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 32 LYVGDL-D-FNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 32 L~V~nL-p-~~vte~~L~~~Fs~-~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
..|+.+ . .+.+-..|.+.+.. ++....+.+..- ..++..+.|.+.+|+.++++ ...-.++|..+.+..=..
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcc
Confidence 344444 2 34677777776654 454434444332 12689999999999999998 455567887777763332
Q ss_pred CcccccC----CCcceeecCCCcc-ccHHHHHhhhccCCCeeEEEEeeC
Q 006282 109 DPSIRKS----GTGNIFIKNLDKS-IDHKALHDTFSSFGNILSCKIATD 152 (652)
Q Consensus 109 ~~~~~~~----~~~~lfV~nLp~~-~t~~~L~~~Fs~fG~I~~~~v~~~ 152 (652)
+...... -.-=|.|.|||.. .+++-++.+.+.+|.+..+...+.
T Consensus 92 ~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 2111111 1122778999977 477888999999999988876543
No 226
>PHA03378 EBNA-3B; Provisional
Probab=64.55 E-value=83 Score=35.33 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.0
Q ss_pred cceeeecCCCCC
Q 006282 311 GLNLYIKNLGDS 322 (652)
Q Consensus 311 ~~~l~V~nlp~~ 322 (652)
.-|||-..|+-+
T Consensus 538 ~pcvy~~~l~ie 549 (991)
T PHA03378 538 APCVYTEDLDIE 549 (991)
T ss_pred CCceeecccCcc
Confidence 345676666544
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.41 E-value=4.2 Score=37.48 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=55.1
Q ss_pred ccEEEEcCCCCCC-CHHHH----HHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc-eeE
Q 006282 29 TTSLYVGDLDFNV-TDSQL----YDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK-SIR 102 (652)
Q Consensus 29 ~~sL~V~nLp~~v-te~~L----~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~-~i~ 102 (652)
.+++.+-+++..+ ++.+. ..+|.+|.+..-.+++| |.+.--|+|.+++.|.+|.-.++...|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4578888888775 22222 44666666665555544 344567999999999999999999999998 888
Q ss_pred eecccCC
Q 006282 103 IMYSHRD 109 (652)
Q Consensus 103 i~~s~~~ 109 (652)
..+++..
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8888753
No 228
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=38 Score=35.25 Aligned_cols=126 Identities=19% Similarity=0.324 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 26 QFLTTSLYVGDLDFN-VTDSQLYDLFSQV----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~-vte~~L~~~Fs~~----G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
..++..|-|=||.|+ +.-.+|+-.|+.| |++..|.||..- |... .|.-..+.|-+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse------------fGke--------Rm~~e~vqGpp 202 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE------------FGKE--------RMAAEHVQGPP 202 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh------------hhHH--------HHhHhhccCCc
Confidence 567889999999998 7899999999876 678888887642 2211 12223344544
Q ss_pred eEee-cccCCcccccCCCcceeec-----------CCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCH
Q 006282 101 IRIM-YSHRDPSIRKSGTGNIFIK-----------NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 168 (652)
Q Consensus 101 i~i~-~s~~~~~~~~~~~~~lfV~-----------nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~ 168 (652)
-.|. .....++..+-+..+++.. .+...++--.|++. .+..+ .--||.|.+.+.
T Consensus 203 rdif~~~d~~~ssqk~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqy-----qlerl---------ryYyAvvec~d~ 268 (622)
T COG5638 203 RDIFTPADNQPSSQKFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQY-----QLERL---------RYYYAVVECEDI 268 (622)
T ss_pred hhhccccccCcchhccCCccchhhhhcchhhhhhcccccchhHHHHHHH-----Hhhhh---------eeEEEEEEeccc
Confidence 4443 1222233333333333321 11222222222222 11111 223899999999
Q ss_pred HHHHHHHHHhcCceecC
Q 006282 169 ESAQNAIDKLNGMLIND 185 (652)
Q Consensus 169 e~A~~Ai~~lng~~l~g 185 (652)
+.+......+.|..+..
T Consensus 269 ~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 269 ETSKNIYSACDGVEYEN 285 (622)
T ss_pred hhhHHHHhccCcccccc
Confidence 99999999988876543
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.21 E-value=20 Score=39.16 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=60.8
Q ss_pred cccceeeecCCCC-CCCHHHHHHHhhhc----CCeeEEEEecCC-----------CCC----------------------
Q 006282 309 FQGLNLYIKNLGD-SIDDEKLKELFSEF----GTITSCKVMRDP-----------SGI---------------------- 350 (652)
Q Consensus 309 ~~~~~l~V~nlp~-~~te~~L~~~F~~f----G~I~~v~i~~~~-----------~g~---------------------- 350 (652)
....+|-|-|++| .+..++|.-+|+.| |.|.+|.|.... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3456799999998 56889999999876 699999987543 122
Q ss_pred ---------------CccEEEEEeCCHHHHHHHHHHhcCcEecC--eeEEEEec
Q 006282 351 ---------------SKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVA 387 (652)
Q Consensus 351 ---------------s~g~afV~F~s~~~A~~A~~~lng~~~~g--~~l~v~~~ 387 (652)
.-=||.|+|.+++.|.+....+.|..+.. ..|-++|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01268999999999999999999999984 44555544
No 230
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.85 E-value=6.1 Score=35.90 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred cccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhhHHHhhccCcceEEecCCCCC-CCHHHHHHHhccCCCe
Q 006282 157 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTI 235 (652)
Q Consensus 157 skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v 235 (652)
..++..++|.+.+++.++++. ....+++..+.+....+..............-|.|.|||.. ++++-++.+.+.+|.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 457889999999999998853 44556666666665543332221111223334778999976 5778899999999999
Q ss_pred eEEEEee
Q 006282 236 TSAVVMR 242 (652)
Q Consensus 236 ~~~~i~~ 242 (652)
..+....
T Consensus 133 i~vD~~t 139 (153)
T PF14111_consen 133 IEVDENT 139 (153)
T ss_pred EEEEcCC
Confidence 8876543
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.54 E-value=5.5 Score=36.79 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=51.8
Q ss_pred ceeeecCCCCCCCH-----HHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe-eEEEE
Q 006282 312 LNLYIKNLGDSIDD-----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVA 385 (652)
Q Consensus 312 ~~l~V~nlp~~~te-----~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~-~l~v~ 385 (652)
+.+.+.+++.++-. .....+|..|-+.....+++ +.++.-|.|.+.+.|..|...++...|.|+ .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34666666655422 34445556555444444443 355788899999999999999999999998 88888
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
+++..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77754
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.44 E-value=26 Score=34.40 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=61.8
Q ss_pred ccccHHHHHhhhccCC---CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccchhh----
Q 006282 127 KSIDHKALHDTFSSFG---NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---- 199 (652)
Q Consensus 127 ~~~t~~~L~~~Fs~fG---~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~~~---- 199 (652)
.++++.+|.+-+...- ...+|+|... ..-||.|+.+-.....+++. -..++|..+.++-+...-..
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckires------nid~iifeael~n~gimkk~-l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRES------NIDFIIFEAELENKGIMKKF-LACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeeccc------ccceEEeeHhhhhhhHHHHH-HHHhcCCeeeecccchHHhhhHHh
Confidence 4577878877665421 3467777542 35689998776655544432 11233444444322211110
Q ss_pred ---------------------HHHhhccCcceEEecCCCCCC------------CHHHHHHHhccCCCeeEEEEe
Q 006282 200 ---------------------ETVAIKTKFNNVFVKNLDEST------------TDEDLKKIFGEYGTITSAVVM 241 (652)
Q Consensus 200 ---------------------~~~~~~~~~~~l~V~nlp~~~------------t~~~l~~~F~~~G~v~~~~i~ 241 (652)
..........+|++.++|..| +++.|+..|+.||.|..+.|.
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 000111233568888887433 567899999999999988765
No 233
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=58.61 E-value=20 Score=27.62 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 44 SQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 44 ~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|.+-|..+| +|+.|+..+...++.....=||+.....+-... ++-..+.|+.+.|+..++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCccc
Confidence 46778888888 999999999988888888899999887666553 3445678999999866543
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=56.80 E-value=26 Score=27.10 Aligned_cols=63 Identities=10% Similarity=0.234 Sum_probs=48.4
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 44 SQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 44 ~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|.+-|...| +|.+|.-.+...+++.+..-||+.....+...++ +=..+.+..|+|++....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46677777777 9999999988878888889999998887744443 335678899999876643
No 235
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.73 E-value=36 Score=27.57 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=44.5
Q ss_pred eeeecCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~-fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
+-|+--++...+..+|++.++. || .|.+|..+.-..| .--|+|++...++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 4677778899999999999987 55 6788877665433 335999999988888876543
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.73 E-value=46 Score=26.46 Aligned_cols=58 Identities=12% Similarity=0.244 Sum_probs=44.1
Q ss_pred eeeecCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~-fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..+ .--|||++...+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 5777788999999999999987 55 6778876655433 335999999888888766543
No 237
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=50.73 E-value=34 Score=29.04 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHhhh---cCCeeEEEEecCCCCCCc---cEEEEEeCCH
Q 006282 319 LGDSIDDEKLKELFSE---FGTITSCKVMRDPSGISK---GSGFVAFSTP 362 (652)
Q Consensus 319 lp~~~te~~L~~~F~~---fG~I~~v~i~~~~~g~s~---g~afV~F~s~ 362 (652)
-|+.+|..+|+++|+. |-.|+.-.+.+| |... ..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rd--GLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRD--GLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhc--CCCCCceEEEEEEeccc
Confidence 4668899999999974 666766666665 3333 3566666543
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.76 E-value=33 Score=35.73 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=47.8
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCe-eEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I-~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~ 377 (652)
...|-|.++|+..--+||...|+.|+.- -.|+++.|. .+|-.|.+...|..|+. |....+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt-~kh~~l 451 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT-LKHDWL 451 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh-ccCceE
Confidence 4568999999999999999999999643 456666653 69999999999999998 433333
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.63 E-value=63 Score=26.20 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=45.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l 91 (652)
.-|+-..+.+.+-.++.+.++. || +|.+|+.+.-+. ..-=|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 3566677889999999998876 56 899998887653 3346999999999998876543
No 240
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=47.60 E-value=1e+02 Score=32.97 Aligned_cols=18 Identities=6% Similarity=0.407 Sum_probs=9.6
Q ss_pred eEEEeeCCHHHHHHHHHH
Q 006282 251 FGFVNFENADDAAKAVEA 268 (652)
Q Consensus 251 ~~fV~f~~~~~A~~Ai~~ 268 (652)
+-.-.|+...+....+..
T Consensus 325 ~k~~~~Ds~K~~lEv~k~ 342 (654)
T COG5180 325 WKHTKFDSSKNLLEVIKS 342 (654)
T ss_pred cccccccchhHHHHHHHh
Confidence 334446666665555543
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.29 E-value=91 Score=24.81 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=44.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l 91 (652)
.-|+-..+.+.+-.+|++.++. || +|.+|+.+.-+. ..-=|||.+....+|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4677778899999999988876 56 888888877543 3346999999988887765543
No 242
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.29 E-value=34 Score=29.62 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHH
Q 006282 41 VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPAD 83 (652)
Q Consensus 41 vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~ 83 (652)
++-++|.+.|+.|.++. ++.+.+.. -.+|++.|.|.+.-+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 46688999999998874 67777654 467999999987644
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.32 E-value=22 Score=30.77 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=25.1
Q ss_pred CCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHH
Q 006282 323 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364 (652)
Q Consensus 323 ~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~ 364 (652)
.+.++|++.|+.|..+ +++.+.+..| ..|+++|.|.+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChH
Confidence 3558999999999765 4666666555 47899999987544
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.23 E-value=7.3 Score=40.83 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=65.9
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHH
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 391 (652)
..|+..++...+++++.-+|..||.|.-+.+-+.. .|..+-.+||+-.+ ++|..+|..+.-..+.|..++++++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 46788899999999999999999999988765543 45567778988877 77888999898889999999999988654
Q ss_pred HH
Q 006282 392 ER 393 (652)
Q Consensus 392 ~r 393 (652)
..
T Consensus 84 ~~ 85 (572)
T KOG4365|consen 84 EK 85 (572)
T ss_pred hh
Confidence 44
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.87 E-value=61 Score=24.48 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.9
Q ss_pred HHHHHHhhhcCCeeEEEEe
Q 006282 326 EKLKELFSEFGTITSCKVM 344 (652)
Q Consensus 326 ~~L~~~F~~fG~I~~v~i~ 344 (652)
.+||++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999876654
No 246
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.75 E-value=2.5e+02 Score=30.23 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=9.0
Q ss_pred EEeCCHHHHHHHHHHhc
Q 006282 357 VAFSTPEEASRALAEMN 373 (652)
Q Consensus 357 V~F~s~~~A~~A~~~ln 373 (652)
+.|.+ +++++..+.|.
T Consensus 319 ~dfSD-DEkEaeak~~k 334 (483)
T KOG2236|consen 319 QDFSD-DEKEAEAKQMK 334 (483)
T ss_pred hccch-HHHHHHHHHHH
Confidence 46655 55555555553
No 247
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.68 E-value=32 Score=35.81 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=42.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEE-eeCCCC-CcccEEEEEeCCHHHHHHHHhhcCC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVC-RDLSTR-RSLGYGYVNYANPADAARALDVLNF 93 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~-~d~~t~-~s~g~AfV~F~~~e~A~~Al~~ln~ 93 (652)
-..+.|+.||+..++.+|.+..+.+- .|...... -+...+ .-++.|||+|...+|.....+.+++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 35789999999999999988777653 22222222 111111 1247899999999996555554443
No 248
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.63 E-value=76 Score=31.57 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=36.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHH
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e 82 (652)
....+-|||+||+.++...+|+.-+...|-+ -.++... -..|-||+.|-+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 3446779999999999999999988777532 2233332 23467999997654
No 249
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.28 E-value=61 Score=32.23 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=35.3
Q ss_pred ceeecCCCccccHHHHHhhhccCCCe-eEEEEeeCCCCCcccEEEEEEcCHH
Q 006282 119 NIFIKNLDKSIDHKALHDTFSSFGNI-LSCKIATDGSGQSKGFGFVQFENKE 169 (652)
Q Consensus 119 ~lfV~nLp~~~t~~~L~~~Fs~fG~I-~~~~v~~~~~g~skG~afV~F~t~e 169 (652)
.|+++||+.++.-++|+..+...+.+ .++. +.| ..|-||.||.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~is----wkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSIS----WKG-HFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEe----eec-CCcceeEecCCcc
Confidence 39999999999999999999887754 2222 233 5778999998753
No 250
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=34.11 E-value=85 Score=26.77 Aligned_cols=108 Identities=26% Similarity=0.345 Sum_probs=59.9
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc--ccCCceeEeecccCCccccc
Q 006282 37 LDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSIRIMYSHRDPSIRK 114 (652)
Q Consensus 37 Lp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~--~i~G~~i~i~~s~~~~~~~~ 114 (652)
||+-+ ..|-++|+.=|+|.+|-.... +. .. .|+-.+++. .++|+ |+|--.+...+.+-
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq-------------yp-dn---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ-------------YP-DN---DALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec-------------cC-Cc---hhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 55543 468899999999999855432 11 11 223333332 35666 77765554333221
Q ss_pred ----CCCcceeecCCCccccHHHHHhhhcc---CCCeeEEEEeeC--CCCCcccEEEEEEcCH
Q 006282 115 ----SGTGNIFIKNLDKSIDHKALHDTFSS---FGNILSCKIATD--GSGQSKGFGFVQFENK 168 (652)
Q Consensus 115 ----~~~~~lfV~nLp~~~t~~~L~~~Fs~---fG~I~~~~v~~~--~~g~skG~afV~F~t~ 168 (652)
+++..+| -|+.++..+++++|+. |-.|..-.+..| +.| +-..||.-|...
T Consensus 71 ~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 2222222 4778899999999986 334443344444 233 333567766544
No 251
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.34 E-value=74 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCeeEEEEe
Q 006282 223 EDLKKIFGEYGTITSAVVM 241 (652)
Q Consensus 223 ~~l~~~F~~~G~v~~~~i~ 241 (652)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999876664
No 252
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.71 E-value=53 Score=32.40 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=26.3
Q ss_pred ceeeecCCCC------------CCCHHHHHHHhhhcCCeeEEEEe
Q 006282 312 LNLYIKNLGD------------SIDDEKLKELFSEFGTITSCKVM 344 (652)
Q Consensus 312 ~~l~V~nlp~------------~~te~~L~~~F~~fG~I~~v~i~ 344 (652)
-+||+-+||- --+++.|+..|+.||.|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4577777762 24678999999999999999886
No 253
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.68 E-value=86 Score=32.79 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~ 95 (652)
--.|-|.|+|...-.++|...|+.|+. =-.|+-+.| | .||-.|.+...|..||- +.+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--t-----halaVFss~~~AaeaLt-~kh~~ 450 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--T-----HALAVFSSVNRAAEALT-LKHDW 450 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--c-----eeEEeecchHHHHHHhh-ccCce
Confidence 457899999999988899999998862 223333343 2 69999999999999998 44433
No 254
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=30.30 E-value=1.4e+02 Score=30.78 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH----------HHhccCCeEEEEEEeeCCCCCcccEEEEEeCC
Q 006282 17 GVAAGASGNQFLTTSLYVGDLDFNVTDSQLYD----------LFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80 (652)
Q Consensus 17 ~~~~~~~~~~~~~~sL~V~nLp~~vte~~L~~----------~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~ 80 (652)
+....++....-+-+|.-.|||.+ .|.+|+. +|...|.|.+|.+... ...-|+.|.-|..
T Consensus 25 ~~~~~~ps~~dfSLSlv~TnLp~E-~E~eLRsfiakrlskgal~~G~GnVasvel~~p---e~~~gcYyCL~q~ 94 (353)
T PF15053_consen 25 GTQAETPSGDDFSLSLVDTNLPSE-AEPELRSFIAKRLSKGALFEGMGNVASVELSIP---ESRVGCYYCLLQQ 94 (353)
T ss_pred cCCCCCCCCCcceeeeeecCCCcc-ccHHHHHHHHHHHhccccccCCCceeeEeecCC---CcceeEEEEeeec
Confidence 333334444555889999999977 5667765 4556688988887543 3334566666654
No 255
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.55 E-value=44 Score=22.18 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHhccCC
Q 006282 39 FNVTDSQLYDLFSQVGQ 55 (652)
Q Consensus 39 ~~vte~~L~~~Fs~~G~ 55 (652)
.++++++|++.|++++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999998753
No 256
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=65 Score=33.80 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=48.3
Q ss_pred ceeeecCCCCCCCHH--------HHHHHhhh--cCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHH
Q 006282 312 LNLYIKNLGDSIDDE--------KLKELFSE--FGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 370 (652)
Q Consensus 312 ~~l~V~nlp~~~te~--------~L~~~F~~--fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~ 370 (652)
+.+|+.+.+.+.+.+ ++...|.+ .+.+..++..++. +..++|..|++|...+.|.++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 458888888766655 99999999 5677777777775 66788999999999999999885
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.05 E-value=11 Score=40.88 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=50.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
-..++|+|+|+++.++-++|..+|+.+--+..+-+..+...++-.-..+|.|.-.-+-.-|+..||+.-+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4578999999999999999999999885554444433333333334678899877666666666665554443
No 258
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.67 E-value=1.5e+02 Score=26.70 Aligned_cols=56 Identities=11% Similarity=0.271 Sum_probs=40.8
Q ss_pred eeeecCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 006282 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~-fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~ 370 (652)
+-|+--++...+..+|++.++. |+ .|.+|..+....| .--|||++....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC--ceEEEEEECCCCcHHHHHH
Confidence 5677778889999999999987 55 5777776655444 2359999987777665443
No 259
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.89 E-value=37 Score=35.49 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=52.9
Q ss_pred CccEEEEcCCCCCCCHH--------HHHHHHhc--cCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhh
Q 006282 28 LTTSLYVGDLDFNVTDS--------QLYDLFSQ--VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~--------~L~~~Fs~--~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ 90 (652)
.-+.+|+.+.....+.+ ++...|.. .+++..|+..||.....+.|.-|++|...+.|++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 45678888887665444 88999988 78999999999987788999999999999999999863
No 260
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.58 E-value=1.1e+02 Score=28.46 Aligned_cols=70 Identities=23% Similarity=0.106 Sum_probs=41.8
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC--CCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g--~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+++|.+ +.+..-++|.++-+ |.+..+..-+...+ .-+|-.||+|.+.+.|...++ -+.....-..|...|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHHHHHH
Confidence 356666 22222334444444 78888876655444 568999999999999988776 333333333343333
No 261
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=1e+02 Score=26.40 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhhhcCCeeE--EEEe--cCC--CCCCccEEEEEeCCHHHHHH
Q 006282 321 DSIDDEKLKELFSEFGTITS--CKVM--RDP--SGISKGSGFVAFSTPEEASR 367 (652)
Q Consensus 321 ~~~te~~L~~~F~~fG~I~~--v~i~--~~~--~g~s~g~afV~F~s~~~A~~ 367 (652)
..++.+||++-++.--..+. |.++ +.. .|++.|||.| |+|.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 36788888888765333322 2222 222 6788889876 778787776
No 262
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.44 E-value=1.4e+02 Score=30.88 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=37.8
Q ss_pred EEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHH
Q 006282 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 331 (652)
Q Consensus 252 ~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~ 331 (652)
|||+|++..+|..+.+.+....- +.+.+..|.... .|+-.||..+..+..+|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~------------------------DI~W~NL~~~~~~r~~R~~ 54 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD------------------------DIIWENLSISSKQRFLRRI 54 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc------------------------cccccccCCChHHHHHHHH
Confidence 69999999999999986555443 344555553332 3677777666666666665
Q ss_pred hh
Q 006282 332 FS 333 (652)
Q Consensus 332 F~ 333 (652)
+.
T Consensus 55 ~~ 56 (325)
T PF02714_consen 55 IV 56 (325)
T ss_pred HH
Confidence 54
No 263
>PF14893 PNMA: PNMA
Probab=23.35 E-value=74 Score=33.10 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLS-TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~-~G~V~~i~v~~d~~-t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
..-++|.|.++|.+|++++|.+.+.. .-+.-..+|.-..- .....-.|+|+|...-+-...=.+ +.-+|-+.+|.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~Vv 92 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRVV 92 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchh---cCCCCCceEEE
Confidence 34678999999999999999887754 22333333322100 001124688888543222111111 12256677765
Q ss_pred cc
Q 006282 105 YS 106 (652)
Q Consensus 105 ~s 106 (652)
+-
T Consensus 93 ~~ 94 (331)
T PF14893_consen 93 FK 94 (331)
T ss_pred ec
Confidence 53
No 264
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.36 E-value=5.7e+02 Score=22.51 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=48.3
Q ss_pred ccEEEEcCCCCC---CCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 29 TTSLYVGDLDFN---VTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 29 ~~sL~V~nLp~~---vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...|.|+..+.. .+-..+++.++.-| .+.+|..-.+ ...|.|.+.++-.+|.+.+....=++..|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 457777777544 56677888888877 6777766443 46899999999888888776444344455444
Q ss_pred cc
Q 006282 105 YS 106 (652)
Q Consensus 105 ~s 106 (652)
..
T Consensus 107 l~ 108 (127)
T PRK10629 107 DD 108 (127)
T ss_pred cC
Confidence 33
No 265
>PRK11901 hypothetical protein; Reviewed
Probab=20.66 E-value=2.3e+02 Score=29.19 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=43.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEE--EeCCHHHHHHHHhhcCCcccCC
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYV--NYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV--~F~~~e~A~~Al~~ln~~~i~G 98 (652)
..-+|-|..+ -+++.|.+|...++ +..++|.+-.+.++. .|..| .|.+.++|.+|+..|-...-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~ 311 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEVQAK 311 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHHHhC
Confidence 3445555543 45888888888875 466777776555543 34333 6899999999999987444333
No 266
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=20.38 E-value=51 Score=37.99 Aligned_cols=40 Identities=28% Similarity=0.590 Sum_probs=32.0
Q ss_pred CCCCccEEEEcCCCCCC-CHHHHHHHHhcc--CCeEEEEEEee
Q 006282 25 NQFLTTSLYVGDLDFNV-TDSQLYDLFSQV--GQVLSVRVCRD 64 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~v-te~~L~~~Fs~~--G~V~~i~v~~d 64 (652)
..-++++|+|.+||.++ ++++|.++|++. |.|.+..+|+|
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~ 246 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRD 246 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhh
Confidence 44578999999999985 888899999976 46666667765
Done!