Query 006282
Match_columns 652
No_of_seqs 418 out of 3109
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 20:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.3E-43 1.1E-47 359.9 29.0 256 28-404 21-278 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-41 4.4E-46 349.5 24.5 251 24-287 36-291 (292)
3 2ghp_A U4/U6 snRNA-associated 100.0 4E-41 1.4E-45 345.8 25.8 251 113-390 37-291 (292)
4 4f02_A Polyadenylate-binding p 100.0 1E-33 3.4E-38 276.4 19.2 193 23-217 9-201 (213)
5 4f02_A Polyadenylate-binding p 100.0 3E-31 1E-35 258.9 22.0 175 206-397 13-188 (213)
6 2dyd_A Poly(A)-binding protein 100.0 4.7E-33 1.6E-37 217.5 3.0 78 555-632 7-84 (85)
7 3md3_A Nuclear and cytoplasmic 100.0 1.3E-30 4.4E-35 243.7 19.4 164 30-194 1-165 (166)
8 1nmr_A Poly(A)-binding protein 100.0 6E-33 2.1E-37 216.9 2.5 78 553-630 6-83 (85)
9 1ifw_A Polyadenylate-binding p 100.0 2.5E-32 8.6E-37 216.8 6.1 78 556-633 6-85 (92)
10 1g9l_A Polyadenylate-binding p 100.0 1.6E-31 5.4E-36 230.6 10.5 82 553-634 49-130 (144)
11 1l3k_A Heterogeneous nuclear r 100.0 3.4E-30 1.2E-34 248.0 20.4 176 23-200 7-187 (196)
12 1b7f_A Protein (SXL-lethal pro 100.0 3.4E-30 1.2E-34 241.5 19.7 163 28-192 2-167 (168)
13 3kuj_A Polyadenylate-binding p 100.0 1.2E-31 3.9E-36 212.0 7.7 79 556-634 6-84 (88)
14 1fxl_A Paraneoplastic encephal 100.0 5.5E-30 1.9E-34 239.7 20.5 163 28-192 1-166 (167)
15 3md3_A Nuclear and cytoplasmic 100.0 9.2E-30 3.1E-34 237.9 19.5 165 209-389 1-166 (166)
16 2qfj_A FBP-interacting repress 100.0 7.6E-30 2.6E-34 249.6 19.2 171 27-197 26-206 (216)
17 3nmr_A Cugbp ELAV-like family 100.0 2.6E-29 8.9E-34 237.1 19.8 165 28-193 2-174 (175)
18 2qfj_A FBP-interacting repress 100.0 7.1E-29 2.4E-33 242.6 21.2 178 206-390 26-205 (216)
19 1fxl_A Paraneoplastic encephal 100.0 1.3E-28 4.5E-33 230.3 20.4 162 208-387 2-167 (167)
20 1b7f_A Protein (SXL-lethal pro 100.0 6.3E-29 2.1E-33 232.9 18.2 163 207-387 2-168 (168)
21 1l3k_A Heterogeneous nuclear r 100.0 9.6E-29 3.3E-33 237.8 19.8 176 206-395 11-188 (196)
22 2cjk_A Nuclear polyadenylated 100.0 8.9E-30 3.1E-34 238.4 11.8 164 28-196 2-166 (167)
23 3nmr_A Cugbp ELAV-like family 100.0 1.1E-28 3.8E-33 232.7 19.3 165 207-388 2-175 (175)
24 1fje_B Nucleolin RBD12, protei 100.0 3.3E-29 1.1E-33 236.6 12.0 167 24-196 8-174 (175)
25 2cjk_A Nuclear polyadenylated 100.0 1.2E-28 4.2E-33 230.7 14.8 163 207-390 2-166 (167)
26 3smz_A Protein raver-1, ribonu 100.0 9.4E-28 3.2E-32 245.1 21.3 174 28-201 94-269 (284)
27 3tyt_A Heterogeneous nuclear r 100.0 3.9E-28 1.3E-32 234.4 16.1 154 28-187 3-194 (205)
28 2g4b_A Splicing factor U2AF 65 100.0 1.2E-27 4.1E-32 225.1 18.7 157 28-193 3-171 (172)
29 2yh0_A Splicing factor U2AF 65 100.0 1.4E-27 4.7E-32 230.1 18.0 163 28-197 3-195 (198)
30 1i2t_A HYD protein; four alpha 100.0 3.9E-29 1.3E-33 183.4 5.3 60 570-629 1-60 (61)
31 3pgw_A U1-A; protein-RNA compl 100.0 2.3E-27 7.9E-32 241.9 20.0 163 25-194 5-281 (282)
32 3tyt_A Heterogeneous nuclear r 99.9 1.1E-27 3.7E-32 231.3 15.6 176 207-387 3-204 (205)
33 2adc_A Polypyrimidine tract-bi 99.9 3E-27 1E-31 233.2 18.4 164 23-195 28-227 (229)
34 3pgw_A U1-A; protein-RNA compl 99.9 7.7E-27 2.6E-31 238.0 20.1 178 206-389 7-282 (282)
35 2g4b_A Splicing factor U2AF 65 99.9 3.8E-27 1.3E-31 221.6 15.5 158 207-388 3-172 (172)
36 1fje_B Nucleolin RBD12, protei 99.9 9.5E-28 3.3E-32 226.5 11.3 164 206-390 11-174 (175)
37 3sde_A Paraspeckle component 1 99.9 2.3E-26 7.8E-31 231.5 18.8 160 24-197 17-180 (261)
38 1qm9_A Polypyrimidine tract-bi 99.9 9E-27 3.1E-31 224.5 14.2 158 29-195 3-196 (198)
39 2adc_A Polypyrimidine tract-bi 99.9 2.6E-26 8.9E-31 226.5 15.3 177 206-390 32-228 (229)
40 3sde_A Paraspeckle component 1 99.9 9E-26 3.1E-30 227.2 18.3 156 206-390 20-179 (261)
41 2yh0_A Splicing factor U2AF 65 99.9 1.4E-26 4.7E-31 223.1 11.4 178 207-390 3-194 (198)
42 1qm9_A Polypyrimidine tract-bi 99.9 2.5E-26 8.5E-31 221.5 10.6 175 208-390 3-197 (198)
43 4f25_A Polyadenylate-binding p 99.8 8.7E-21 3E-25 165.3 10.3 104 28-133 4-113 (115)
44 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-20 6.2E-25 173.4 11.2 147 238-390 3-150 (158)
45 4fxv_A ELAV-like protein 1; RN 99.8 5.7E-20 2E-24 155.2 10.8 83 26-108 16-98 (99)
46 4fxv_A ELAV-like protein 1; RN 99.8 1.6E-19 5.5E-24 152.4 10.7 82 308-389 16-98 (99)
47 2kn4_A Immunoglobulin G-bindin 99.8 3E-19 1E-23 165.1 12.8 138 58-197 2-151 (158)
48 2i2y_A Fusion protein consists 99.8 1.2E-19 4.2E-24 166.1 6.9 138 246-390 10-148 (150)
49 3s8s_A Histone-lysine N-methyl 99.8 1.1E-18 3.7E-23 150.3 11.2 83 27-109 4-86 (110)
50 4f25_A Polyadenylate-binding p 99.8 5.7E-19 2E-23 153.7 9.0 108 116-224 4-113 (115)
51 2lxi_A RNA-binding protein 10; 99.8 2.8E-19 9.6E-24 148.6 6.6 83 29-111 1-85 (91)
52 2lkz_A RNA-binding protein 5; 99.8 3.5E-19 1.2E-23 148.6 7.2 84 25-108 5-94 (95)
53 3s8s_A Histone-lysine N-methyl 99.8 3.7E-18 1.3E-22 146.9 13.6 90 310-399 5-95 (110)
54 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-18 7.1E-23 144.5 11.0 87 21-107 8-94 (94)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-18 5.8E-23 142.8 10.2 84 26-109 3-86 (87)
56 1x5s_A Cold-inducible RNA-bind 99.8 3E-18 1E-22 145.9 11.3 92 22-113 5-96 (102)
57 1x5u_A Splicing factor 3B subu 99.8 6.3E-18 2.2E-22 144.7 12.9 91 22-112 8-98 (105)
58 2dnz_A Probable RNA-binding pr 99.8 6E-18 2.1E-22 142.0 12.4 85 27-111 3-87 (95)
59 2i2y_A Fusion protein consists 99.8 2E-18 7E-23 158.0 10.3 125 67-196 9-148 (150)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-18 1.2E-22 140.3 10.1 83 25-107 3-85 (85)
61 3lqv_A PRE-mRNA branch site pr 99.7 2.5E-18 8.5E-23 149.9 9.7 105 26-143 5-109 (115)
62 2dgs_A DAZ-associated protein 99.7 7.9E-18 2.7E-22 142.4 12.5 89 23-112 4-92 (99)
63 2div_A TRNA selenocysteine ass 99.7 4.7E-18 1.6E-22 143.8 11.0 88 22-109 2-94 (99)
64 2cqc_A Arginine/serine-rich sp 99.7 6.8E-18 2.3E-22 141.6 11.7 87 22-108 8-94 (95)
65 2dnm_A SRP46 splicing factor; 99.7 5.3E-18 1.8E-22 144.6 11.2 89 22-110 6-94 (103)
66 1whw_A Hypothetical protein ri 99.7 8.2E-18 2.8E-22 142.3 12.2 87 26-112 5-91 (99)
67 2cpz_A CUG triplet repeat RNA- 99.7 8.1E-18 2.8E-22 146.6 12.5 88 24-111 20-107 (115)
68 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-17 4E-22 150.8 13.8 89 23-111 36-124 (139)
69 3md1_A Nuclear and cytoplasmic 99.7 6.5E-18 2.2E-22 137.9 10.7 81 29-109 1-81 (83)
70 2cq0_A Eukaryotic translation 99.7 8.3E-18 2.8E-22 143.4 11.7 89 23-111 9-97 (103)
71 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-17 6.2E-22 144.3 13.6 92 22-113 8-99 (115)
72 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.4E-22 140.4 13.0 86 24-110 12-97 (100)
73 2dgp_A Bruno-like 4, RNA bindi 99.7 9.4E-18 3.2E-22 143.9 11.2 90 22-111 6-98 (106)
74 2ywk_A Putative RNA-binding pr 99.7 8.1E-18 2.8E-22 141.2 10.5 85 22-107 9-93 (95)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.6E-18 1.9E-22 144.2 9.6 90 22-111 5-94 (102)
76 3p5t_L Cleavage and polyadenyl 99.7 3.2E-18 1.1E-22 142.0 7.5 82 30-111 2-85 (90)
77 2jrs_A RNA-binding protein 39; 99.7 2.2E-17 7.6E-22 141.8 12.9 85 25-109 22-106 (108)
78 2x1f_A MRNA 3'-END-processing 99.7 8.4E-18 2.9E-22 141.4 10.0 83 28-110 1-83 (96)
79 2kxn_B Transformer-2 protein h 99.7 9E-18 3.1E-22 149.0 10.7 88 22-109 39-126 (129)
80 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.6E-22 140.4 11.8 85 23-107 7-99 (99)
81 1x5t_A Splicing factor 3B subu 99.7 7.7E-18 2.6E-22 141.6 9.5 85 27-111 3-88 (96)
82 2cpf_A RNA binding motif prote 99.7 1.3E-17 4.5E-22 140.8 10.9 86 27-112 3-91 (98)
83 2dng_A Eukaryotic translation 99.7 2.8E-17 9.5E-22 140.1 12.9 88 22-111 8-95 (103)
84 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.4E-22 143.7 12.8 90 22-112 10-99 (116)
85 2dh8_A DAZ-associated protein 99.7 2E-17 6.8E-22 141.5 11.7 90 22-112 9-98 (105)
86 1p27_B RNA-binding protein 8A; 99.7 1.8E-17 6E-22 142.2 11.4 87 24-110 18-104 (106)
87 2khc_A Testis-specific RNP-typ 99.7 9.8E-18 3.4E-22 146.8 9.9 84 24-107 35-118 (118)
88 1x4h_A RNA-binding protein 28; 99.7 2.7E-17 9.2E-22 142.3 12.5 88 24-111 10-103 (111)
89 2dnh_A Bruno-like 5, RNA bindi 99.7 3.7E-17 1.3E-21 139.9 13.2 86 25-111 11-99 (105)
90 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-17 4.3E-22 133.8 9.3 75 26-106 4-78 (89)
91 2dhg_A TRNA selenocysteine ass 99.7 2.7E-17 9.4E-22 140.4 12.0 86 25-111 5-92 (104)
92 2cph_A RNA binding motif prote 99.7 2.5E-17 8.7E-22 141.4 11.9 89 24-112 10-100 (107)
93 2m2b_A RNA-binding protein 10; 99.7 8E-18 2.7E-22 150.2 8.7 87 22-109 16-108 (131)
94 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.2E-17 1.4E-21 139.0 12.8 89 22-112 8-96 (103)
95 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.6E-22 139.9 9.9 82 25-112 12-95 (105)
96 2d9p_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 139.1 12.5 87 23-111 9-95 (103)
97 3ns6_A Eukaryotic translation 99.7 8.3E-18 2.9E-22 142.4 7.9 82 27-108 4-92 (100)
98 2lxi_A RNA-binding protein 10; 99.7 5E-18 1.7E-22 141.0 6.4 79 312-390 2-83 (91)
99 2lkz_A RNA-binding protein 5; 99.7 8.9E-18 3E-22 140.1 7.7 79 311-389 9-94 (95)
100 2wbr_A GW182, gawky, LD47780P; 99.7 3.2E-17 1.1E-21 131.4 10.4 77 310-391 6-82 (89)
101 2hvz_A Splicing factor, argini 99.7 1.8E-17 6.1E-22 140.8 9.3 92 30-126 1-100 (101)
102 1x4e_A RNA binding motif, sing 99.7 8.1E-18 2.8E-22 138.0 6.9 82 26-107 2-83 (85)
103 3s7r_A Heterogeneous nuclear r 99.7 3.6E-17 1.2E-21 134.7 10.8 81 25-106 7-87 (87)
104 2fy1_A RNA-binding motif prote 99.7 4.4E-17 1.5E-21 141.9 11.8 84 26-110 4-87 (116)
105 2cq3_A RNA-binding protein 9; 99.7 8.9E-17 3E-21 137.0 13.1 88 22-111 8-95 (103)
106 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-16 3.6E-21 136.5 13.4 89 22-112 8-96 (103)
107 2dgv_A HnRNP M, heterogeneous 99.7 5.8E-17 2E-21 135.0 11.5 84 26-111 5-88 (92)
108 3md1_A Nuclear and cytoplasmic 99.7 3.1E-17 1.1E-21 133.8 9.7 79 312-390 2-81 (83)
109 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.6E-17 1.6E-21 134.1 10.5 81 310-390 5-86 (87)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5E-17 1.7E-21 146.9 11.6 87 20-106 54-140 (140)
111 2rs2_A Musashi-1, RNA-binding 99.7 3.1E-17 1E-21 141.2 9.6 87 23-110 19-105 (109)
112 3ucg_A Polyadenylate-binding p 99.7 4.2E-17 1.4E-21 134.9 10.2 80 28-108 5-84 (89)
113 1s79_A Lupus LA protein; RRM, 99.7 3.3E-17 1.1E-21 139.1 9.6 80 27-108 9-88 (103)
114 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-17 1.2E-21 141.3 10.0 87 24-110 21-107 (110)
115 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.6E-21 139.3 13.0 87 22-109 8-94 (114)
116 1wi8_A EIF-4B, eukaryotic tran 99.7 5.8E-17 2E-21 138.4 11.1 88 23-112 9-97 (104)
117 3n9u_C Cleavage and polyadenyl 99.7 4.1E-17 1.4E-21 149.6 10.6 81 28-108 54-136 (156)
118 2dgx_A KIAA0430 protein; RRM d 99.7 5.3E-17 1.8E-21 136.4 10.3 85 23-110 3-91 (96)
119 3ulh_A THO complex subunit 4; 99.7 5.8E-17 2E-21 139.2 10.8 83 24-107 24-106 (107)
120 2cpe_A RNA-binding protein EWS 99.7 6.1E-17 2.1E-21 140.5 11.0 88 24-111 10-105 (113)
121 1wez_A HnRNP H', FTP-3, hetero 99.7 6.9E-17 2.3E-21 137.1 10.9 85 23-110 9-93 (102)
122 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 138.0 9.1 85 25-109 11-95 (98)
123 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.7E-17 1.3E-21 152.0 9.7 139 254-394 11-156 (165)
124 3r27_A HnRNP L, heterogeneous 99.7 4.6E-17 1.6E-21 135.7 9.1 79 307-390 17-97 (100)
125 2mss_A Protein (musashi1); RNA 99.7 2.7E-17 9.3E-22 131.3 7.4 75 31-106 1-75 (75)
126 1sjq_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 137.6 8.7 79 308-391 13-93 (105)
127 2do4_A Squamous cell carcinoma 99.7 6.4E-17 2.2E-21 137.0 10.1 83 308-390 14-96 (100)
128 1p1t_A Cleavage stimulation fa 99.7 5.1E-17 1.8E-21 138.7 9.6 84 27-110 6-89 (104)
129 3r27_A HnRNP L, heterogeneous 99.7 7.5E-17 2.6E-21 134.4 10.2 80 24-109 16-97 (100)
130 3ns6_A Eukaryotic translation 99.7 1.9E-17 6.4E-22 140.2 6.7 83 310-392 5-95 (100)
131 2dgw_A Probable RNA-binding pr 99.7 1.1E-16 3.8E-21 133.0 11.1 84 24-110 5-88 (91)
132 1x4a_A Splicing factor, argini 99.7 2.1E-16 7.1E-21 136.1 13.1 86 23-111 16-101 (109)
133 4a8x_A RNA-binding protein wit 99.7 5.5E-17 1.9E-21 133.9 9.0 82 28-109 3-85 (88)
134 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-17 8.3E-22 132.3 6.6 76 30-106 1-76 (77)
135 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7E-17 2.4E-21 132.3 9.5 80 309-388 5-85 (85)
136 1s79_A Lupus LA protein; RRM, 99.7 5.9E-17 2E-21 137.5 9.3 84 309-393 9-92 (103)
137 3ex7_B RNA-binding protein 8A; 99.7 7.8E-17 2.7E-21 142.8 10.4 88 23-110 16-103 (126)
138 3p5t_L Cleavage and polyadenyl 99.7 2.1E-17 7.1E-22 137.1 6.2 80 312-391 2-84 (90)
139 2kt5_A RNA and export factor-b 99.7 1E-16 3.5E-21 141.5 11.1 86 24-110 30-115 (124)
140 2ywk_A Putative RNA-binding pr 99.7 8.8E-17 3E-21 134.8 10.1 81 309-389 14-94 (95)
141 1wg5_A Heterogeneous nuclear r 99.7 1.3E-16 4.6E-21 136.0 11.4 85 24-110 10-95 (104)
142 2x1f_A MRNA 3'-END-processing 99.7 9.9E-17 3.4E-21 134.8 10.3 83 311-393 2-85 (96)
143 1whw_A Hypothetical protein ri 99.7 9.1E-17 3.1E-21 135.8 10.1 83 309-391 6-89 (99)
144 2ek1_A RNA-binding protein 12; 99.7 2.9E-17 9.9E-22 137.8 6.9 82 26-107 12-93 (95)
145 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-17 9.9E-22 139.1 6.8 86 22-109 12-98 (100)
146 1x4d_A Matrin 3; structural ge 99.7 6.3E-17 2.2E-21 136.3 8.6 83 24-112 10-95 (102)
147 2db1_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 140.7 9.6 84 24-109 12-98 (118)
148 2cpy_A RNA-binding protein 12; 99.7 7.3E-17 2.5E-21 140.1 9.3 87 309-396 13-100 (114)
149 2d9p_A Polyadenylate-binding p 99.7 6.5E-17 2.2E-21 137.8 8.7 85 306-391 10-94 (103)
150 2err_A Ataxin-2-binding protei 99.7 7.7E-17 2.6E-21 138.8 8.9 88 20-109 20-107 (109)
151 2dis_A Unnamed protein product 99.7 1.4E-16 4.7E-21 137.3 10.5 86 26-111 5-94 (109)
152 2do0_A HnRNP M, heterogeneous 99.7 1.6E-16 5.6E-21 138.0 11.1 82 309-390 13-94 (114)
153 1wex_A Hypothetical protein (r 99.7 2.4E-16 8.3E-21 133.7 11.7 81 25-111 11-93 (104)
154 2dnz_A Probable RNA-binding pr 99.7 1.3E-16 4.6E-21 133.7 9.9 81 310-390 4-85 (95)
155 3n9u_C Cleavage and polyadenyl 99.7 1.9E-16 6.5E-21 145.1 11.8 86 310-395 54-142 (156)
156 2fy1_A RNA-binding motif prote 99.7 9.8E-17 3.4E-21 139.7 9.4 82 309-390 5-86 (116)
157 2dnh_A Bruno-like 5, RNA bindi 99.7 9.8E-17 3.4E-21 137.2 9.2 83 309-391 13-98 (105)
158 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-16 3.7E-21 139.4 9.6 83 308-390 22-105 (115)
159 2cqc_A Arginine/serine-rich sp 99.7 1.8E-16 6.3E-21 132.8 10.5 82 308-389 12-94 (95)
160 2lea_A Serine/arginine-rich sp 99.7 2.3E-17 7.7E-22 147.8 5.2 121 251-390 6-127 (135)
161 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.3E-21 140.5 9.9 84 25-111 25-112 (127)
162 2cq4_A RNA binding motif prote 99.7 7E-17 2.4E-21 140.4 8.1 82 27-109 23-104 (114)
163 1x5t_A Splicing factor 3B subu 99.7 9.6E-17 3.3E-21 134.8 8.6 82 310-391 4-87 (96)
164 2e5h_A Zinc finger CCHC-type a 99.7 2.2E-16 7.4E-21 132.1 10.8 81 308-388 13-94 (94)
165 2cpy_A RNA-binding protein 12; 99.7 9.6E-17 3.3E-21 139.4 8.8 85 23-109 9-94 (114)
166 2cq3_A RNA-binding protein 9; 99.7 2.6E-16 9E-21 134.0 11.3 82 308-390 12-93 (103)
167 2cq0_A Eukaryotic translation 99.7 1.3E-16 4.4E-21 136.0 9.3 84 307-390 11-95 (103)
168 2dgx_A KIAA0430 protein; RRM d 99.7 2.1E-16 7.1E-21 132.7 10.3 80 309-390 7-90 (96)
169 3ulh_A THO complex subunit 4; 99.7 2E-16 6.7E-21 135.8 10.4 81 308-388 26-106 (107)
170 2lea_A Serine/arginine-rich sp 99.7 7.3E-17 2.5E-21 144.4 8.0 87 24-110 42-128 (135)
171 2dgo_A Cytotoxic granule-assoc 99.7 2E-16 6.9E-21 137.7 10.5 83 308-390 12-95 (115)
172 2ki2_A SS-DNA binding protein 99.7 3.2E-17 1.1E-21 136.0 5.1 80 30-110 2-81 (90)
173 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-16 9.6E-21 144.7 12.0 87 24-110 34-120 (156)
174 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-16 4E-21 137.9 8.7 84 308-391 23-107 (110)
175 2jwn_A Embryonic polyadenylate 99.7 2E-16 6.8E-21 139.7 10.4 82 28-110 35-116 (124)
176 1x4b_A Heterogeneous nuclear r 99.7 2.3E-16 7.8E-21 137.6 10.6 85 27-112 25-109 (116)
177 2fc9_A NCL protein; structure 99.7 2.7E-16 9.2E-21 133.4 10.7 86 22-111 8-93 (101)
178 1x5u_A Splicing factor 3B subu 99.7 1.5E-16 5.3E-21 136.0 9.1 83 308-390 12-95 (105)
179 2ad9_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 135.6 10.9 83 24-112 26-110 (119)
180 2cq1_A PTB-like protein L; RRM 99.7 4.1E-16 1.4E-20 131.5 11.5 81 25-111 11-93 (101)
181 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.5E-16 1.2E-20 133.2 11.2 83 308-391 12-94 (103)
182 2hgl_A HNRPF protein, heteroge 99.7 1.4E-16 4.8E-21 142.0 9.0 83 24-108 39-124 (136)
183 2dnq_A RNA-binding protein 4B; 99.7 5.6E-16 1.9E-20 128.4 12.0 80 25-112 4-83 (90)
184 2dgs_A DAZ-associated protein 99.7 2.4E-16 8.2E-21 133.2 9.8 82 308-390 7-89 (99)
185 2db1_A Heterogeneous nuclear r 99.7 2E-16 6.8E-21 138.2 9.6 85 308-393 14-101 (118)
186 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.4E-21 135.1 8.7 82 309-390 10-92 (102)
187 2la6_A RNA-binding protein FUS 99.7 2E-16 6.8E-21 133.7 9.2 81 308-388 10-99 (99)
188 1p27_B RNA-binding protein 8A; 99.7 2.2E-16 7.5E-21 135.3 9.6 83 308-390 20-103 (106)
189 2cpi_A CCR4-NOT transcription 99.7 2.6E-16 8.8E-21 136.0 10.0 87 25-111 11-103 (111)
190 2dhg_A TRNA selenocysteine ass 99.7 1.1E-16 3.7E-21 136.7 7.5 83 308-390 6-90 (104)
191 2err_A Ataxin-2-binding protei 99.7 1.8E-16 6.3E-21 136.4 9.0 83 307-390 25-107 (109)
192 2cph_A RNA binding motif prote 99.7 2.2E-16 7.5E-21 135.5 9.5 83 308-390 12-97 (107)
193 2dnn_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 135.5 8.9 80 26-108 13-92 (109)
194 2dnn_A RNA-binding protein 12; 99.7 3.9E-16 1.3E-20 133.6 10.7 81 311-393 16-96 (109)
195 2diu_A KIAA0430 protein; struc 99.7 5.1E-16 1.8E-20 125.5 10.7 79 25-113 5-88 (96)
196 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.6E-21 134.9 7.1 77 309-390 13-92 (102)
197 1p1t_A Cleavage stimulation fa 99.7 1.5E-16 5.1E-21 135.8 8.0 87 310-396 7-94 (104)
198 2cpf_A RNA binding motif prote 99.7 1.9E-16 6.6E-21 133.5 8.6 81 310-390 4-88 (98)
199 2nlw_A Eukaryotic translation 99.7 4E-16 1.4E-20 133.3 10.6 83 25-109 11-100 (105)
200 3ucg_A Polyadenylate-binding p 99.7 3.3E-16 1.1E-20 129.5 9.6 79 311-390 6-85 (89)
201 1x4c_A Splicing factor, argini 99.7 8.2E-16 2.8E-20 132.1 12.4 80 25-111 11-95 (108)
202 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5.3E-21 136.4 7.7 84 25-112 24-108 (111)
203 2hgl_A HNRPF protein, heteroge 99.7 1.6E-16 5.4E-21 141.6 8.0 84 309-393 42-128 (136)
204 2cq1_A PTB-like protein L; RRM 99.7 3.8E-16 1.3E-20 131.7 9.9 80 307-391 11-92 (101)
205 2khc_A Testis-specific RNP-typ 99.6 2.2E-16 7.4E-21 138.2 8.6 81 308-388 37-118 (118)
206 1x5s_A Cold-inducible RNA-bind 99.6 2.2E-16 7.7E-21 134.2 8.5 82 309-390 10-92 (102)
207 2dgv_A HnRNP M, heterogeneous 99.6 2.4E-16 8.2E-21 131.3 8.3 81 309-390 6-86 (92)
208 2cq4_A RNA binding motif prote 99.6 3.4E-16 1.2E-20 135.9 9.6 83 310-393 24-107 (114)
209 3q2s_C Cleavage and polyadenyl 99.6 1.6E-16 5.6E-21 155.4 8.5 86 310-395 67-155 (229)
210 2krb_A Eukaryotic translation 99.6 2.2E-16 7.5E-21 128.1 7.8 73 29-103 1-80 (81)
211 1x5o_A RNA binding motif, sing 99.6 1E-15 3.5E-20 132.9 12.5 83 25-108 21-111 (114)
212 2fc8_A NCL protein; structure 99.6 5.9E-16 2E-20 131.6 10.7 87 23-112 9-95 (102)
213 2kt5_A RNA and export factor-b 99.6 4.4E-16 1.5E-20 137.4 10.3 82 309-390 33-114 (124)
214 1why_A Hypothetical protein ri 99.6 7.8E-16 2.7E-20 129.5 11.3 81 24-110 12-94 (97)
215 2jrs_A RNA-binding protein 39; 99.6 2.4E-16 8.1E-21 135.3 8.2 83 308-390 23-106 (108)
216 1wel_A RNA-binding protein 12; 99.6 2.2E-16 7.4E-21 139.4 8.2 85 24-109 20-104 (124)
217 2cpe_A RNA-binding protein EWS 99.6 3.1E-16 1.1E-20 136.0 9.0 83 308-390 12-103 (113)
218 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.9E-16 1.7E-20 144.4 10.9 87 25-111 68-154 (165)
219 2ad9_A Polypyrimidine tract-bi 99.6 3E-16 1E-20 135.6 8.8 79 308-391 28-108 (119)
220 1x4h_A RNA-binding protein 28; 99.6 4.6E-16 1.6E-20 134.4 9.9 83 308-390 12-101 (111)
221 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-16 4.1E-21 127.5 5.8 75 31-106 1-75 (75)
222 2kxn_B Transformer-2 protein h 99.6 3E-16 1E-20 139.2 8.9 83 308-390 43-126 (129)
223 2dnm_A SRP46 splicing factor; 99.6 2.2E-16 7.6E-21 134.5 7.7 82 309-390 11-93 (103)
224 2dgw_A Probable RNA-binding pr 99.6 4.8E-16 1.6E-20 129.1 9.5 80 309-390 8-87 (91)
225 2dnp_A RNA-binding protein 14; 99.6 6.3E-16 2.1E-20 128.1 10.1 81 23-111 3-83 (90)
226 1wi8_A EIF-4B, eukaryotic tran 99.6 4.4E-16 1.5E-20 132.9 9.4 82 308-391 12-95 (104)
227 2div_A TRNA selenocysteine ass 99.6 3.6E-16 1.2E-20 132.1 8.7 82 309-390 7-94 (99)
228 2ytc_A PRE-mRNA-splicing facto 99.6 7.8E-16 2.7E-20 126.0 10.4 78 24-107 7-85 (85)
229 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6.1E-21 136.0 6.8 84 23-108 5-91 (107)
230 4a8x_A RNA-binding protein wit 99.6 1.6E-16 5.6E-21 131.0 6.2 81 310-390 3-85 (88)
231 1x4g_A Nucleolysin TIAR; struc 99.6 7.4E-16 2.5E-20 132.7 10.6 83 26-114 22-104 (109)
232 3s7r_A Heterogeneous nuclear r 99.6 7.1E-16 2.4E-20 126.9 10.0 79 308-387 8-87 (87)
233 2cpj_A Non-POU domain-containi 99.6 9.2E-16 3.2E-20 129.6 10.9 82 24-111 10-91 (99)
234 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4E-21 135.7 5.3 84 25-110 13-96 (101)
235 2dgp_A Bruno-like 4, RNA bindi 99.6 3.7E-16 1.3E-20 133.9 8.5 83 308-390 10-96 (106)
236 2la4_A Nuclear and cytoplasmic 99.6 1.2E-16 4.1E-21 135.6 5.3 78 25-108 23-100 (101)
237 2mss_A Protein (musashi1); RNA 99.6 2.4E-16 8.1E-21 125.8 6.7 74 313-387 1-75 (75)
238 2cpi_A CCR4-NOT transcription 99.6 4.7E-16 1.6E-20 134.3 8.8 83 308-390 12-101 (111)
239 2a3j_A U1 small nuclear ribonu 99.6 4.7E-16 1.6E-20 136.9 8.8 85 308-394 26-114 (127)
240 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.9E-16 6.4E-21 134.1 6.0 81 308-390 16-98 (100)
241 2cpx_A Hypothetical protein FL 99.6 2.5E-16 8.7E-21 137.0 6.8 87 25-111 21-107 (115)
242 1x4f_A Matrin 3; structural ge 99.6 3.2E-16 1.1E-20 133.9 7.3 81 25-111 21-104 (112)
243 3q2s_C Cleavage and polyadenyl 99.6 5.7E-16 1.9E-20 151.6 10.1 81 28-108 67-149 (229)
244 2e5j_A Methenyltetrahydrofolat 99.6 1.3E-15 4.6E-20 128.1 11.0 82 23-109 13-94 (97)
245 2hgm_A HNRPF protein, heteroge 99.6 4.8E-16 1.7E-20 136.2 8.5 82 24-108 37-120 (126)
246 1x4a_A Splicing factor, argini 99.6 9.9E-16 3.4E-20 131.9 10.4 81 308-390 19-99 (109)
247 2dng_A Eukaryotic translation 99.6 7.8E-16 2.7E-20 131.1 9.5 81 308-390 12-93 (103)
248 1nu4_A U1A RNA binding domain; 99.6 3.3E-16 1.1E-20 131.8 7.0 84 25-111 4-91 (97)
249 2dgt_A RNA-binding protein 30; 99.6 1.5E-15 5.3E-20 126.3 10.9 81 23-111 4-84 (92)
250 3ex7_B RNA-binding protein 8A; 99.6 6.3E-16 2.1E-20 136.9 8.9 83 308-390 19-102 (126)
251 2cqd_A RNA-binding region cont 99.6 8.8E-16 3E-20 133.8 9.7 82 308-390 14-96 (116)
252 2jvo_A Nucleolar protein 3; nu 99.6 9.4E-16 3.2E-20 131.6 9.7 80 23-110 25-104 (108)
253 1x5o_A RNA binding motif, sing 99.6 7E-16 2.4E-20 134.0 9.0 82 309-390 23-112 (114)
254 2lmi_A GRSF-1, G-rich sequence 99.6 2.4E-16 8.3E-21 135.2 5.9 85 308-393 8-95 (107)
255 1wex_A Hypothetical protein (r 99.6 6.5E-16 2.2E-20 131.1 8.4 77 309-390 13-91 (104)
256 2xnq_A Nuclear polyadenylated 99.6 1.4E-15 4.6E-20 127.9 10.3 80 22-109 15-95 (97)
257 2jvr_A Nucleolar protein 3; RN 99.6 8.2E-16 2.8E-20 131.8 9.0 78 310-390 27-105 (111)
258 1wg5_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 132.5 7.6 82 309-391 13-95 (104)
259 1x4e_A RNA binding motif, sing 99.6 2.2E-16 7.4E-21 129.4 5.2 79 310-388 4-83 (85)
260 2dha_A FLJ20171 protein; RRM d 99.6 3.9E-16 1.3E-20 136.5 7.1 87 309-396 21-111 (123)
261 2krb_A Eukaryotic translation 99.6 2.2E-16 7.6E-21 128.1 5.1 73 312-385 2-81 (81)
262 2nlw_A Eukaryotic translation 99.6 4.9E-16 1.7E-20 132.7 7.4 81 309-390 13-100 (105)
263 1u6f_A Tcubp1, RNA-binding pro 99.6 7.3E-16 2.5E-20 139.0 8.9 83 308-390 39-122 (139)
264 2cqp_A RNA-binding protein 12; 99.6 4.2E-16 1.4E-20 131.4 6.8 81 309-389 13-94 (98)
265 2m2b_A RNA-binding protein 10; 99.6 2E-16 6.8E-21 141.0 5.0 81 309-390 21-108 (131)
266 2ek1_A RNA-binding protein 12; 99.6 4.5E-16 1.6E-20 130.4 6.9 80 310-389 14-94 (95)
267 1wez_A HnRNP H', FTP-3, hetero 99.6 4E-16 1.4E-20 132.3 6.4 80 309-390 13-92 (102)
268 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.5E-20 131.0 9.7 82 309-391 23-105 (109)
269 2dh8_A DAZ-associated protein 99.6 6.7E-16 2.3E-20 132.0 7.8 82 308-390 13-95 (105)
270 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.8E-20 133.6 9.1 80 26-107 20-103 (123)
271 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.6E-16 1.6E-20 124.8 6.2 75 312-387 1-76 (77)
272 3pgw_S U1-70K; protein-RNA com 99.6 1.4E-16 4.7E-21 170.7 4.0 82 309-390 100-182 (437)
273 1x4f_A Matrin 3; structural ge 99.6 4E-16 1.4E-20 133.3 6.1 78 308-390 22-102 (112)
274 2fc9_A NCL protein; structure 99.6 1.2E-15 4E-20 129.5 8.9 80 308-390 12-91 (101)
275 2f3j_A RNA and export factor b 99.6 1.3E-15 4.5E-20 142.8 10.0 84 25-109 84-167 (177)
276 3lqv_A PRE-mRNA branch site pr 99.6 1.6E-15 5.5E-20 131.9 9.9 81 309-391 6-86 (115)
277 2lcw_A RNA-binding protein FUS 99.4 4.6E-17 1.6E-21 142.0 0.0 87 26-112 4-98 (116)
278 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5.3E-20 128.7 9.2 77 309-390 25-101 (101)
279 2xs2_A Deleted in azoospermia- 99.6 7.9E-16 2.7E-20 130.8 7.4 81 26-109 6-86 (102)
280 2ki2_A SS-DNA binding protein 99.6 3E-16 1E-20 130.1 4.6 79 312-391 2-81 (90)
281 1sjr_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 134.9 12.4 82 25-110 42-125 (164)
282 2dgu_A Heterogeneous nuclear r 99.6 2.9E-15 1E-19 127.5 10.6 79 25-111 7-85 (103)
283 2hgn_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 139.6 5.2 83 25-110 42-124 (139)
284 2kvi_A Nuclear polyadenylated 99.6 1.6E-15 5.4E-20 127.3 8.6 79 25-111 6-85 (96)
285 2ytc_A PRE-mRNA-splicing facto 99.6 2.5E-15 8.6E-20 123.0 9.4 76 308-388 9-85 (85)
286 1x4b_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 131.8 9.0 80 310-390 26-106 (116)
287 2jwn_A Embryonic polyadenylate 99.6 1.6E-15 5.6E-20 133.8 8.8 78 311-389 36-114 (124)
288 1wf1_A RNA-binding protein RAL 99.6 3.2E-15 1.1E-19 128.9 10.5 79 25-111 23-102 (110)
289 1x4c_A Splicing factor, argini 99.6 3.1E-15 1E-19 128.5 10.3 75 310-390 14-93 (108)
290 1nu4_A U1A RNA binding domain; 99.6 9.5E-16 3.2E-20 129.0 6.9 83 309-393 6-92 (97)
291 2dis_A Unnamed protein product 99.6 1.5E-15 5.2E-20 130.7 8.3 82 309-390 6-92 (109)
292 1whx_A Hypothetical protein ri 99.6 1.1E-15 3.7E-20 131.9 7.4 77 27-109 8-84 (111)
293 2jvo_A Nucleolar protein 3; nu 99.6 2.1E-15 7.1E-20 129.4 9.0 79 307-392 27-105 (108)
294 2cqg_A TDP-43, TAR DNA-binding 99.6 3.6E-15 1.2E-19 126.9 10.4 81 308-390 12-93 (103)
295 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 128.8 9.9 78 308-390 22-99 (109)
296 1h2v_Z 20 kDa nuclear CAP bind 99.6 3E-15 1E-19 137.8 10.5 82 309-390 37-119 (156)
297 1why_A Hypothetical protein ri 99.6 2.6E-15 8.8E-20 126.3 9.1 77 309-390 15-93 (97)
298 1wel_A RNA-binding protein 12; 99.6 1.3E-15 4.4E-20 134.4 7.5 85 309-394 23-108 (124)
299 2dnq_A RNA-binding protein 4B; 99.6 3E-15 1E-19 124.0 9.3 75 309-390 6-80 (90)
300 2cqh_A IGF-II mRNA-binding pro 99.6 2E-15 6.9E-20 125.9 8.2 79 26-111 5-85 (93)
301 2cpd_A Apobec-1 stimulating pr 99.6 9.4E-15 3.2E-19 123.3 12.4 80 24-111 10-91 (99)
302 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7E-20 128.9 8.2 78 308-390 22-106 (114)
303 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.4E-15 1.2E-19 134.7 10.0 79 309-387 61-140 (140)
304 3pgw_S U1-70K; protein-RNA com 99.6 6E-16 2E-20 165.7 5.7 151 46-196 9-182 (437)
305 2hvz_A Splicing factor, argini 99.6 1.7E-15 5.7E-20 128.5 7.3 75 312-390 1-75 (101)
306 2cpj_A Non-POU domain-containi 99.6 2.4E-15 8.1E-20 127.1 8.2 77 309-390 13-89 (99)
307 2xnq_A Nuclear polyadenylated 99.6 5.7E-15 1.9E-19 124.0 10.4 76 308-390 19-95 (97)
308 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-15 7.4E-20 126.5 7.8 81 25-110 12-92 (96)
309 2j8a_A Histone-lysine N-methyl 99.6 2.6E-15 8.8E-20 128.5 8.1 79 29-107 2-94 (136)
310 1whx_A Hypothetical protein ri 99.6 2.4E-15 8.4E-20 129.7 8.1 76 310-390 9-84 (111)
311 2e5g_A U6 snRNA-specific termi 99.6 1.1E-14 3.7E-19 121.7 11.5 79 26-110 5-83 (94)
312 1x5p_A Negative elongation fac 99.6 1.8E-14 6.2E-19 121.0 12.9 81 24-112 10-90 (97)
313 1wg1_A KIAA1579 protein, homol 99.6 4.2E-15 1.4E-19 122.5 8.7 77 27-110 3-79 (88)
314 2hgm_A HNRPF protein, heteroge 99.6 1.7E-15 5.8E-20 132.7 6.5 82 309-392 40-123 (126)
315 2dgt_A RNA-binding protein 30; 99.6 7.4E-15 2.5E-19 122.2 10.1 76 308-390 7-82 (92)
316 2dnp_A RNA-binding protein 14; 99.6 6.7E-15 2.3E-19 121.8 9.5 76 308-390 6-81 (90)
317 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-15 5.4E-20 121.0 5.2 74 313-387 1-75 (75)
318 2xs2_A Deleted in azoospermia- 99.6 2.2E-15 7.7E-20 128.0 6.3 82 309-392 7-88 (102)
319 2hgn_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 137.1 4.0 81 309-391 44-124 (139)
320 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5.2E-19 126.5 11.6 82 24-110 23-107 (130)
321 2e5j_A Methenyltetrahydrofolat 99.6 4.1E-15 1.4E-19 125.0 7.6 78 309-390 17-94 (97)
322 2f3j_A RNA and export factor b 99.6 5E-15 1.7E-19 138.8 9.0 82 309-390 86-167 (177)
323 2e44_A Insulin-like growth fac 99.6 7.7E-15 2.6E-19 123.1 9.2 81 25-109 11-92 (96)
324 2j8a_A Histone-lysine N-methyl 99.6 4.5E-15 1.6E-19 126.9 7.6 80 312-391 3-97 (136)
325 2lcw_A RNA-binding protein FUS 99.3 2.8E-16 9.6E-21 137.0 0.0 84 310-393 6-98 (116)
326 2cpx_A Hypothetical protein FL 99.6 4.9E-15 1.7E-19 128.8 7.5 79 309-390 23-105 (115)
327 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.2E-19 119.8 9.5 78 308-393 8-87 (89)
328 1fjc_A Nucleolin RBD2, protein 99.6 3.6E-15 1.2E-19 125.1 6.3 78 309-390 14-91 (96)
329 3egn_A RNA-binding protein 40; 99.5 1.9E-15 6.5E-20 136.9 4.8 84 26-109 42-130 (143)
330 2kvi_A Nuclear polyadenylated 99.5 6.4E-15 2.2E-19 123.6 7.6 77 308-391 7-84 (96)
331 2dgu_A Heterogeneous nuclear r 99.5 1.4E-14 4.6E-19 123.3 9.5 76 309-391 9-84 (103)
332 3d2w_A TAR DNA-binding protein 99.5 8.5E-15 2.9E-19 120.8 7.9 78 25-109 7-84 (89)
333 2pe8_A Splicing factor 45; RRM 99.5 3E-14 1E-18 121.0 11.4 83 309-391 6-95 (105)
334 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-14 3.7E-19 132.3 9.1 77 311-390 46-124 (164)
335 1wg1_A KIAA1579 protein, homol 99.5 9.7E-15 3.3E-19 120.3 8.0 75 310-390 4-78 (88)
336 1fj7_A Nucleolin RBD1, protein 99.5 1E-15 3.5E-20 129.8 2.2 80 310-391 16-96 (101)
337 2fc8_A NCL protein; structure 99.5 1.3E-14 4.4E-19 123.2 9.0 80 308-390 12-92 (102)
338 2cq2_A Hypothetical protein LO 99.5 8E-15 2.7E-19 125.3 7.7 80 26-111 22-108 (114)
339 2cqh_A IGF-II mRNA-binding pro 99.5 7.5E-15 2.5E-19 122.4 7.0 76 309-390 6-83 (93)
340 2dnl_A Cytoplasmic polyadenyla 99.5 1.6E-14 5.4E-19 125.3 9.2 78 27-107 6-86 (114)
341 3zzy_A Polypyrimidine tract-bi 99.5 2.1E-14 7.1E-19 125.6 10.0 75 312-390 29-106 (130)
342 2hzc_A Splicing factor U2AF 65 99.5 1.6E-14 5.3E-19 118.8 8.6 73 26-105 3-86 (87)
343 1x5p_A Negative elongation fac 99.5 2.3E-14 8E-19 120.4 9.8 75 309-390 13-87 (97)
344 2e5i_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 121.5 13.1 78 27-110 23-103 (124)
345 1wf1_A RNA-binding protein RAL 99.5 1.4E-14 4.6E-19 124.9 8.3 73 310-389 26-99 (110)
346 3egn_A RNA-binding protein 40; 99.5 4.5E-15 1.5E-19 134.4 5.5 84 308-391 42-131 (143)
347 2pe8_A Splicing factor 45; RRM 99.5 3.7E-14 1.3E-18 120.4 10.1 83 26-108 5-93 (105)
348 3beg_B Splicing factor, argini 99.5 1.6E-14 5.5E-19 125.4 7.9 75 27-108 14-93 (115)
349 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.3E-19 119.6 6.8 78 27-111 3-80 (88)
350 2cpd_A Apobec-1 stimulating pr 99.5 4.6E-14 1.6E-18 119.1 10.3 75 309-390 13-89 (99)
351 2e44_A Insulin-like growth fac 99.5 3.4E-14 1.2E-18 119.1 8.5 78 310-390 14-92 (96)
352 2bz2_A Negative elongation fac 99.5 4.2E-14 1.4E-18 123.7 9.4 80 24-111 34-113 (121)
353 3beg_B Splicing factor, argini 99.5 2.7E-14 9.1E-19 124.0 7.9 74 310-389 15-93 (115)
354 2e5i_A Heterogeneous nuclear r 99.5 5.8E-14 2E-18 122.3 9.5 74 312-390 26-102 (124)
355 2diu_A KIAA0430 protein; struc 99.5 3.7E-14 1.3E-18 114.6 7.5 70 312-390 10-84 (96)
356 2voo_A Lupus LA protein; RNA-b 99.5 5.8E-14 2E-18 133.5 10.0 79 29-109 109-187 (193)
357 2e5g_A U6 snRNA-specific termi 99.5 5.7E-14 1.9E-18 117.3 8.2 75 311-390 8-82 (94)
358 2hzc_A Splicing factor U2AF 65 99.5 1.3E-13 4.4E-18 113.2 9.3 70 310-385 5-85 (87)
359 2bz2_A Negative elongation fac 99.5 9E-14 3.1E-18 121.6 8.4 77 308-391 36-112 (121)
360 2dnl_A Cytoplasmic polyadenyla 99.5 7.7E-14 2.6E-18 120.9 7.7 77 310-389 7-87 (114)
361 2voo_A Lupus LA protein; RNA-b 99.5 1.3E-13 4.3E-18 131.2 9.5 79 311-390 109-187 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-13 4.1E-18 134.2 8.8 81 25-111 130-231 (240)
363 1wf0_A TDP-43, TAR DNA-binding 99.4 7.1E-14 2.4E-18 115.1 5.5 75 310-390 4-78 (88)
364 3v4m_A Splicing factor U2AF 65 99.4 2.4E-13 8.2E-18 115.5 9.0 83 310-392 4-99 (105)
365 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-13 4E-18 134.2 7.9 79 310-393 133-232 (240)
366 1jmt_A Splicing factor U2AF 35 99.4 8.4E-14 2.9E-18 118.1 5.0 72 316-387 20-103 (104)
367 2dit_A HIV TAT specific factor 99.4 1.1E-12 3.7E-17 113.2 11.5 86 23-112 9-105 (112)
368 3ue2_A Poly(U)-binding-splicin 99.4 4.1E-13 1.4E-17 116.3 7.9 82 310-391 19-110 (118)
369 3ue2_A Poly(U)-binding-splicin 99.4 7.6E-13 2.6E-17 114.6 8.4 81 28-108 19-108 (118)
370 3v4m_A Splicing factor U2AF 65 99.4 7E-13 2.4E-17 112.6 7.6 82 27-108 3-96 (105)
371 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.7E-17 112.6 9.5 80 308-390 12-102 (112)
372 1jmt_A Splicing factor U2AF 35 99.4 2E-13 6.9E-18 115.8 3.1 72 34-106 20-103 (104)
373 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 103.9 13.0 76 29-111 10-92 (100)
374 3s6e_A RNA-binding protein 39; 99.3 2E-11 6.9E-16 104.8 10.6 81 310-393 6-96 (114)
375 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.4E-11 4.9E-16 103.0 7.7 64 321-390 27-90 (100)
376 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.5E-16 125.7 8.8 77 308-389 15-98 (345)
377 3s6e_A RNA-binding protein 39; 99.2 3.7E-11 1.3E-15 103.1 8.1 80 25-108 3-92 (114)
378 3tht_A Alkylated DNA repair pr 99.2 3.2E-11 1.1E-15 123.5 7.8 76 25-106 14-96 (345)
379 1owx_A Lupus LA protein, SS-B, 99.0 9E-10 3.1E-14 94.5 9.0 84 306-394 13-100 (121)
380 2dnr_A Synaptojanin-1; RRM dom 99.0 8.3E-10 2.8E-14 88.4 7.8 73 309-389 5-85 (91)
381 2dnr_A Synaptojanin-1; RRM dom 98.9 2.8E-09 9.6E-14 85.4 8.3 75 26-109 4-86 (91)
382 1owx_A Lupus LA protein, SS-B, 98.9 2E-09 6.8E-14 92.4 8.0 75 26-106 15-93 (121)
383 1ufw_A Synaptojanin 2; RNP dom 98.8 6.3E-09 2.1E-13 83.7 6.6 74 308-389 12-94 (95)
384 3dxb_A Thioredoxin N-terminall 98.8 1.3E-08 4.4E-13 99.0 9.9 71 322-392 140-215 (222)
385 1ufw_A Synaptojanin 2; RNP dom 98.7 1.3E-08 4.6E-13 81.8 6.5 74 24-106 10-92 (95)
386 3dxb_A Thioredoxin N-terminall 98.7 2.9E-08 1E-12 96.5 8.5 80 29-108 124-212 (222)
387 2l9w_A U4/U6 snRNA-associated- 98.5 8.3E-07 2.8E-11 72.6 10.2 73 310-387 20-97 (117)
388 2dhx_A Poly (ADP-ribose) polym 98.0 8.9E-05 3.1E-09 60.3 11.9 88 28-130 7-99 (104)
389 2l9w_A U4/U6 snRNA-associated- 97.8 9.8E-05 3.3E-09 60.5 8.7 72 27-104 19-95 (117)
390 1wey_A Calcipressin 1; structu 97.7 5.6E-05 1.9E-09 61.9 6.0 75 29-109 5-84 (104)
391 1wey_A Calcipressin 1; structu 97.6 0.00012 4.2E-09 59.9 6.6 73 311-388 5-82 (104)
392 1uw4_A UPF3X; nonsense mediate 97.4 0.00037 1.3E-08 56.1 7.7 68 30-97 2-71 (91)
393 1whv_A Poly(A)-specific ribonu 97.1 0.0019 6.4E-08 51.9 8.4 61 23-92 10-70 (100)
394 2dhx_A Poly (ADP-ribose) polym 97.1 0.0021 7.1E-08 52.3 8.2 69 310-386 7-80 (104)
395 1wwh_A Nucleoporin 35, nucleop 96.8 0.003 1E-07 53.2 7.6 74 25-106 20-94 (119)
396 1wwh_A Nucleoporin 35, nucleop 96.7 0.005 1.7E-07 51.9 7.8 75 309-390 22-97 (119)
397 3ctr_A Poly(A)-specific ribonu 96.6 0.003 1E-07 50.9 5.2 53 31-92 8-60 (101)
398 1whv_A Poly(A)-specific ribonu 96.5 0.0048 1.6E-07 49.5 6.1 54 312-373 17-70 (100)
399 2l08_A Regulator of nonsense t 96.4 0.0024 8.2E-08 51.7 3.7 70 28-97 8-79 (97)
400 1uw4_A UPF3X; nonsense mediate 96.3 0.015 5E-07 46.8 8.1 68 312-379 2-72 (91)
401 3ctr_A Poly(A)-specific ribonu 96.2 0.0052 1.8E-07 49.5 4.7 53 313-373 8-60 (101)
402 3pq1_A Poly(A) RNA polymerase; 95.9 0.0035 1.2E-07 66.3 3.1 57 28-90 52-108 (464)
403 3p3d_A Nucleoporin 53; structu 95.3 0.027 9.3E-07 48.0 5.8 77 312-390 8-99 (132)
404 3p3d_A Nucleoporin 53; structu 94.8 0.026 9E-07 48.1 4.5 76 29-106 7-96 (132)
405 3pq1_A Poly(A) RNA polymerase; 92.5 0.067 2.3E-06 56.5 3.6 54 312-370 54-107 (464)
406 2l08_A Regulator of nonsense t 92.5 0.16 5.4E-06 41.0 4.9 69 311-379 9-80 (97)
407 3d45_A Poly(A)-specific ribonu 85.6 1.9 6.4E-05 46.4 8.5 56 29-93 440-495 (507)
408 2z73_A Rhodopsin; visual pigme 80.3 0.34 1.2E-05 51.2 0.0 6 119-124 70-75 (448)
409 3d45_A Poly(A)-specific ribonu 79.1 3.5 0.00012 44.3 7.5 53 313-373 442-494 (507)
410 2g0c_A ATP-dependent RNA helic 49.3 21 0.00073 26.8 4.5 60 321-388 11-75 (76)
411 2g0c_A ATP-dependent RNA helic 44.5 47 0.0016 24.8 5.9 67 31-106 2-74 (76)
412 4eyt_A Telomerase associated p 31.7 1.8E+02 0.0061 22.5 7.6 56 310-372 11-66 (129)
413 3lcn_C MRNA transport factor G 28.2 70 0.0024 18.8 3.1 19 613-631 9-27 (29)
414 4eyt_A Telomerase associated p 26.0 2.2E+02 0.0075 21.9 6.6 54 118-178 13-66 (129)
415 4a8j_B Elongator complex prote 25.6 1.5E+02 0.005 28.3 6.8 49 29-77 166-222 (270)
416 2wx3_A MRNA-decapping enzyme 1 24.3 34 0.0012 23.6 1.6 21 603-623 18-38 (51)
417 4e8u_A Putative uncharacterize 24.1 87 0.003 27.9 4.7 49 314-364 15-74 (172)
418 3j21_T 50S ribosomal protein L 22.1 1.4E+02 0.0048 23.2 5.0 58 313-372 24-83 (86)
419 2gle_A Neurabin-1; SAM domain, 20.3 95 0.0032 23.0 3.7 43 590-632 30-73 (74)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.3e-43 Score=359.90 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=231.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++++|||+|||+++|+++|+++|+.|| |.++++ ++++|||||.|.+.++|.+|++.||+..|.|++|+|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 468999999999999999999999999 999888 4567899999999999999999999999999999999965
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCe
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~ 186 (652)
. ..+|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+++..+.|+
T Consensus 94 ~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 T--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp C--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred C--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4 358999999999999999999999999999999988 5899999999999999999999999999999999
Q ss_pred eeeecccccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHH
Q 006282 187 QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266 (652)
Q Consensus 187 ~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai 266 (652)
.+.|.+..+.....
T Consensus 166 ~i~v~~a~~~~~~~------------------------------------------------------------------ 179 (284)
T 3smz_A 166 TLYVHWTDAGQLTP------------------------------------------------------------------ 179 (284)
T ss_dssp ECEEEECCGGGCCT------------------------------------------------------------------
T ss_pred EEEEEECCCCCCCc------------------------------------------------------------------
Confidence 99998764321100
Q ss_pred HHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCC-CHHHHHHHhhhcCCeeEEEEec
Q 006282 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMR 345 (652)
Q Consensus 267 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-te~~L~~~F~~fG~I~~v~i~~ 345 (652)
.....++|||+|||.++ ++++|+++|+.||.|.+++|+.
T Consensus 180 ----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 180 ----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 00235689999999996 9999999999999999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHHHHHHHhhhcC
Q 006282 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 404 (652)
Q Consensus 346 ~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~~~~~~~~~ 404 (652)
+.+|+++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.++..++..+.++....
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aaq 278 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQ 278 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHHT
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999988887777665543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.3e-41 Score=349.53 Aligned_cols=251 Identities=20% Similarity=0.343 Sum_probs=217.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.....+++|||+|||+++|+++|+++|+.||+|.+|++++|..+ ++|||||+|.+.++|.+|++ +|+..|.|+.|+|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 34567899999999999999999999999999999999998754 57999999999999999996 9999999999999
Q ss_pred ecccCCcccccCCCcceeecCCCccccHHHHHhhhccCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
.|+. ..+|||+|||.++++++|+++|+.|| .|.+|.+..+..|.++|||||+|.+.++|..|++.+++..
T Consensus 113 ~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 113 SHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp EECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 9864 56899999999999999999999999 9999999999888899999999999999999999999999
Q ss_pred ecCeeeeecccccchhhHHH-hhccCcceEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCC--CCcceeEEEeeCC
Q 006282 183 INDKQVFVGHFLRKQERETV-AIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGD--GKSKCFGFVNFEN 258 (652)
Q Consensus 183 l~g~~~~v~~~~~~~~~~~~-~~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~--g~~~g~~fV~f~~ 258 (652)
+.|+.+.|.+..+....... ......++|||+|||.+ +++++|+++|+.||.|.++.+..+.+ |.++|||||+|.+
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp ETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred eCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 99999999988766544333 33456788999999999 99999999999999999999999876 9999999999999
Q ss_pred HHHHHHHHHHHCCCccCCceEEEEccccc
Q 006282 259 ADDAAKAVEALNGKKFDDREWYVGKAQKK 287 (652)
Q Consensus 259 ~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 287 (652)
.++|.+|+ .|++..+.|+.|.|.++.++
T Consensus 264 ~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999 99999999999999999765
No 3
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4e-41 Score=345.80 Aligned_cols=251 Identities=21% Similarity=0.380 Sum_probs=217.2
Q ss_pred ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecc
Q 006282 113 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 192 (652)
Q Consensus 113 ~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~ 192 (652)
+....++|||+|||.++++++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|+ .+++..+.|+.+.+.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 3445678999999999999999999999999999999998766 5899999999999999999 5899999999999976
Q ss_pred cccchhhHHHhhccCcceEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCC
Q 006282 193 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 271 (652)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~ 271 (652)
. ..++|||+|||.++++++|+++|+.|| .|.++.+..+..|.++|||||+|.+.++|..|+..|++
T Consensus 115 ~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 115 L-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp C-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred C-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 4 468899999999999999999999999 99999999988899999999999999999999999999
Q ss_pred CccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCC--
Q 006282 272 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPS-- 348 (652)
Q Consensus 272 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~te~~L~~~F~~fG~I~~v~i~~~~~-- 348 (652)
..+.|+.|.|.++......... .......++|||+|||.. +++++|+++|+.||.|.+|+|+.+..
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~t 250 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEH 250 (292)
T ss_dssp CEETTEECEEEECCCC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--
T ss_pred CEeCCcEEEEEECCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcC
Confidence 9999999999998765433211 122345689999999999 99999999999999999999999887
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 349 g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 251 g~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 251 SFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999999999999 99999999999999999875
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-33 Score=276.45 Aligned_cols=193 Identities=58% Similarity=0.989 Sum_probs=163.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
..+..++++|||+|||+++||++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.+|+..+.|+.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 103 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 103 i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
+.|+............+|||+||+.++++++|+++|+.||.|.+|+|..|..+ ++|||||+|.+.++|.+|++.|||..
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 99998887777777889999999999999999999999999999999998544 89999999999999999999999999
Q ss_pred ecCeeeeecccccchhhHHHhhccCcceEEecCCC
Q 006282 183 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD 217 (652)
Q Consensus 183 l~g~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp 217 (652)
++|+.|.|.++.++.++.... .......+..++|
T Consensus 168 ~~g~~i~V~~a~~~~~~~~~~-~~~~~~~~p~~~P 201 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKEREAEL-GARAKEFYPYDVP 201 (213)
T ss_dssp ETTEECEEEECCCHHHHHHHH-C------------
T ss_pred ECCEEEEEEEcCCCcccchhh-hcccCCCCCCCCC
Confidence 999999999988776554432 2233334444444
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=3e-31 Score=258.93 Aligned_cols=175 Identities=34% Similarity=0.512 Sum_probs=157.5
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+|||+++++++|+++|++||.|.+|.++++ .+|+++|||||+|.+.++|.+|++.+++..+.|+.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999988 46999999999999999999999999999999999999988
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~ 364 (652)
......... ..++|||+|||.++++++|+++|+.||.|++|+|++|. +.++|||||+|.+.++
T Consensus 93 ~~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHH
T ss_pred ccccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHH
Confidence 765443221 23579999999999999999999999999999999885 4479999999999999
Q ss_pred HHHHHHHhcCcEecCeeEEEEecccHHHHHHHH
Q 006282 365 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 397 (652)
Q Consensus 365 A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~~~ 397 (652)
|.+|++.|||..|+|++|.|.++.++.++....
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 999999999999999999999999987776543
No 6
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=4.7e-33 Score=217.53 Aligned_cols=78 Identities=79% Similarity=1.074 Sum_probs=74.6
Q ss_pred cccchhhhhcCChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 006282 555 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 632 (652)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 632 (652)
.++++++|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|+.||+||++||++|+++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999988653
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=243.73 Aligned_cols=164 Identities=29% Similarity=0.544 Sum_probs=155.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|||+|||.++|+++|+++|+.||+|.+|++++++. ++++|||||+|.+.++|.+|++.+|+..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999975 679999999999999999999999999999999999999888
Q ss_pred cccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeee
Q 006282 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188 (652)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~ 188 (652)
.........+|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.+|+..++|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777778889999999999999999999999999999999998 688999999999999999999999999999999999
Q ss_pred eecccc
Q 006282 189 FVGHFL 194 (652)
Q Consensus 189 ~v~~~~ 194 (652)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998764
No 8
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=6e-33 Score=216.92 Aligned_cols=78 Identities=54% Similarity=0.721 Sum_probs=74.9
Q ss_pred CccccchhhhhcCChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 006282 553 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 630 (652)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~ 630 (652)
.+.++++++|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|+.||+||++||++|+
T Consensus 6 ~~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 6 SQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CCCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999998775
No 9
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=2.5e-32 Score=216.77 Aligned_cols=78 Identities=33% Similarity=0.445 Sum_probs=75.4
Q ss_pred ccchhhhhcCChHHHHHHhhhhchhhhhh--ccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHhh
Q 006282 556 TALSTALANASPEQQRTLLGESLYPLVEQ--LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 633 (652)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~--~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~ 633 (652)
|.++++|+++++++||++|||+|||+|++ ++|++||||||||||||++|||+||+|+++|+.||+||++||++|++.+
T Consensus 6 p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 85 (92)
T 1ifw_A 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 85 (92)
T ss_dssp SSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999 9999999999999999999999999999999999999999999999754
No 10
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=1.6e-31 Score=230.59 Aligned_cols=82 Identities=44% Similarity=0.738 Sum_probs=77.6
Q ss_pred CccccchhhhhcCChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 006282 553 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 632 (652)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 632 (652)
.+.++++++|+++++++||++|||+|||+|+.++|++|+||||||||||++|||+||+|+++|++||+||++||++|+++
T Consensus 49 ~~~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 128 (144)
T 1g9l_A 49 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 128 (144)
T ss_dssp SCCCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSS
T ss_pred CcchhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hc
Q 006282 633 QA 634 (652)
Q Consensus 633 ~~ 634 (652)
+.
T Consensus 129 ~~ 130 (144)
T 1g9l_A 129 EA 130 (144)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.4e-30 Score=248.04 Aligned_cols=176 Identities=27% Similarity=0.455 Sum_probs=152.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
...+..+++|||+|||+++||++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++. ++..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34556789999999999999999999999999999999999999999999999999999999999985 88899999999
Q ss_pred eecccCCcccc----cCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHH
Q 006282 103 IMYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177 (652)
Q Consensus 103 i~~s~~~~~~~----~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~ 177 (652)
|.|+....... .....+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|+..
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 99987654322 224578999999999999999999999999999999998 4889999999999999999999976
Q ss_pred hcCceecCeeeeecccccchhhH
Q 006282 178 LNGMLINDKQVFVGHFLRKQERE 200 (652)
Q Consensus 178 lng~~l~g~~~~v~~~~~~~~~~ 200 (652)
++..++|+.|.|.+..++....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999988776553
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=3.4e-30 Score=241.47 Aligned_cols=163 Identities=31% Similarity=0.567 Sum_probs=152.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++++|||+|||+++|+++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.+++..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHhcCceecC-
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLIND- 185 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g- 185 (652)
.... .....+|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|.+|++.+|+..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6543 3456789999999999999999999999999999999985 88999999999999999999999999999977
Q ss_pred -eeeeecc
Q 006282 186 -KQVFVGH 192 (652)
Q Consensus 186 -~~~~v~~ 192 (652)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888765
No 13
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.97 E-value=1.2e-31 Score=211.96 Aligned_cols=79 Identities=46% Similarity=0.793 Sum_probs=75.7
Q ss_pred ccchhhhhcCChHHHHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHhhc
Q 006282 556 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 634 (652)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~~ 634 (652)
++++++|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|+.||+||++||++|++++.
T Consensus 6 ~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998773
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=5.5e-30 Score=239.66 Aligned_cols=163 Identities=34% Similarity=0.614 Sum_probs=150.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHhcCceecCe
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~ 186 (652)
.... .....+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.+||..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 6543 3345689999999999999999999999999999999984 888999999999999999999999999999997
Q ss_pred e--eeecc
Q 006282 187 Q--VFVGH 192 (652)
Q Consensus 187 ~--~~v~~ 192 (652)
. |.|.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 6 55544
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-30 Score=237.89 Aligned_cols=165 Identities=30% Similarity=0.532 Sum_probs=152.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccch
Q 006282 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288 (652)
Q Consensus 209 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 288 (652)
++|||+|||.++++++|+++|+.||.|.++.+..+.+++++|||||+|.+.++|..|++.+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999986543
Q ss_pred HHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHH
Q 006282 289 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 367 (652)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~ 367 (652)
. ......++|||+|||..+++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 12335678999999999999999999999999999999988 578999999999999999999
Q ss_pred HHHHhcCcEecCeeEEEEeccc
Q 006282 368 ALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 368 A~~~lng~~~~g~~l~v~~~~~ 389 (652)
|+..|||..++|+.|.|.|+++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999864
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=7.6e-30 Score=249.56 Aligned_cols=171 Identities=22% Similarity=0.477 Sum_probs=154.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
..+++|||+|||+++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCccc---------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHH
Q 006282 107 HRDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 176 (652)
Q Consensus 107 ~~~~~~---------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~ 176 (652)
...... ......+|||+|||.++++++|+++|+.||.|..|++..+ .+|.++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 755321 2245678999999999999999999999999999999998 588999999999999999999999
Q ss_pred HhcCceecCeeeeecccccch
Q 006282 177 KLNGMLINDKQVFVGHFLRKQ 197 (652)
Q Consensus 177 ~lng~~l~g~~~~v~~~~~~~ 197 (652)
.+|+..+.|+.|.|.+.....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999877653
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2.6e-29 Score=237.07 Aligned_cols=165 Identities=25% Similarity=0.394 Sum_probs=148.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHhhcCCcccC---CceeE
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR--RSLGYGYVNYANPADAARALDVLNFTPLN---NKSIR 102 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~--~s~g~AfV~F~~~e~A~~Al~~ln~~~i~---G~~i~ 102 (652)
.+++|||+|||+++||++|+++|+.||+|.+|+++++..++ +++|||||+|.+.++|++|++.||+..+. ++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999999887 89999999999999999999999987775 67888
Q ss_pred eecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 103 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 103 i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
+.++..... ......+|||+|||.++++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.+||..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 887765432 2335668999999999999999999999999999999999889999999999999999999999999987
Q ss_pred ec---Ceeeeeccc
Q 006282 183 IN---DKQVFVGHF 193 (652)
Q Consensus 183 l~---g~~~~v~~~ 193 (652)
+. ++.+.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 65 388888764
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=7.1e-29 Score=242.64 Aligned_cols=178 Identities=24% Similarity=0.403 Sum_probs=155.6
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+|||.++++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456789999999999999999999999999999999884 7899999999999999999999999999999999999998
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
.............. ......++|||+|||.++++++|+++|+.||.|++|+|+.+. +|+++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA-------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHHHH-------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhhhh-------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 77655433222111 122346789999999999999999999999999999999884 7899999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+|.+|+..|||..|+|+.|.|.++..+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 999999999999999999999998743
No 19
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.3e-28 Score=230.28 Aligned_cols=162 Identities=32% Similarity=0.603 Sum_probs=149.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 208 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
.++|||+|||.++++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|..|++.+++..+.|+.+.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999986 899999999999999999999999999999999999999875
Q ss_pred chHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHH
Q 006282 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 365 (652)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A 365 (652)
... ....++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 532 1245689999999999999999999999999999999886 788999999999999999
Q ss_pred HHHHHHhcCcEecCee--EEEEec
Q 006282 366 SRALAEMNGKMIVSKP--LYVAVA 387 (652)
Q Consensus 366 ~~A~~~lng~~~~g~~--l~v~~~ 387 (652)
.+|++.|||..+.|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999964 888875
No 20
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=6.3e-29 Score=232.85 Aligned_cols=163 Identities=31% Similarity=0.566 Sum_probs=151.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
..++|||+|||.++++++|+++|+.||.|.++.++++ .+|.++|||||+|.+.++|..|++.+++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999999987 578999999999999999999999999999999999999987
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~ 364 (652)
.+.. ....++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 6532 2245789999999999999999999999999999999886 88999999999999999
Q ss_pred HHHHHHHhcCcEecC--eeEEEEec
Q 006282 365 ASRALAEMNGKMIVS--KPLYVAVA 387 (652)
Q Consensus 365 A~~A~~~lng~~~~g--~~l~v~~~ 387 (652)
|.+|++.|||..+.| ++|.|.||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999987 99999986
No 21
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=9.6e-29 Score=237.85 Aligned_cols=176 Identities=24% Similarity=0.465 Sum_probs=148.7
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+|||.++++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|++. ++..+.|+.|.+.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45688999999999999999999999999999999988 4689999999999999999999975 899999999999998
Q ss_pred ccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHH
Q 006282 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (652)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~ 363 (652)
......... ......++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.+
T Consensus 90 ~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 90 VSREDSQRP------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCccccccc------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 765432211 122345789999999999999999999999999999999885 7899999999999999
Q ss_pred HHHHHHHHhcCcEecCeeEEEEecccHHHHHH
Q 006282 364 EASRALAEMNGKMIVSKPLYVAVAQRKEERRA 395 (652)
Q Consensus 364 ~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~~ 395 (652)
+|.+|+.. +|..++|+.|.|.++.+++....
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 99999985 89999999999999998876643
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=8.9e-30 Score=238.45 Aligned_cols=164 Identities=22% Similarity=0.503 Sum_probs=150.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++++|||+|||+++||++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++. ...+.|+.|++.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999994 468899999999886
Q ss_pred CCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCe
Q 006282 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (652)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~ 186 (652)
.... .....+|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++ +++..+.|+
T Consensus 80 ~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 80 PRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred chhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 5432 223568999999999999999999999999999999998 579999999999999999999997 899999999
Q ss_pred eeeecccccc
Q 006282 187 QVFVGHFLRK 196 (652)
Q Consensus 187 ~~~v~~~~~~ 196 (652)
.|.|.++.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999987654
No 23
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.1e-28 Score=232.69 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=147.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCC---CcceeEEEeeCCHHHHHHHHHHHCCCccC---CceEE
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG---KSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 280 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g---~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~---g~~l~ 280 (652)
..++|||+|||.++++++|+++|++||.|.++.++++..+ +++|||||+|.+.++|..|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999988655 89999999999999999999999998775 56777
Q ss_pred EEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeC
Q 006282 281 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360 (652)
Q Consensus 281 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~ 360 (652)
+.++..... .....++|||+|||.++++++|+++|++||.|.+++++.+.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 777654322 123466899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCcEec---CeeEEEEecc
Q 006282 361 TPEEASRALAEMNGKMIV---SKPLYVAVAQ 388 (652)
Q Consensus 361 s~~~A~~A~~~lng~~~~---g~~l~v~~~~ 388 (652)
+.++|.+|++.|||..+. +++|.|.|+.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999974
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=3.3e-29 Score=236.61 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=151.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
..+.+.++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|++ ||+..|.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567899999999999999999999999998877 445566778899999999999999999995 9999999999999
Q ss_pred ecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCcee
Q 006282 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (652)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l 183 (652)
.|+............+|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.+|+..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 99988776666778899999999999999999999999988766 66788999999999999999999999999999
Q ss_pred cCeeeeecccccc
Q 006282 184 NDKQVFVGHFLRK 196 (652)
Q Consensus 184 ~g~~~~v~~~~~~ 196 (652)
.|+.|.|.++.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999987654
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.2e-28 Score=230.68 Aligned_cols=163 Identities=25% Similarity=0.526 Sum_probs=148.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
..++|||+|||.++++++|+++|+.||.|.++.++++ .+|.++|||||+|.+.++|..|++ ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 3578999999999999999999999999999999988 579999999999999999999998 4678899999998886
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~ 364 (652)
.+.... ..++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 643221 24589999999999999999999999999999999885 79999999999999999
Q ss_pred HHHHHHHhcCcEecCeeEEEEecccH
Q 006282 365 ASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 365 A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
|.+|++ +||..++|+.|.|.|+.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998 8999999999999999875
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.4e-28 Score=245.08 Aligned_cols=174 Identities=22% Similarity=0.323 Sum_probs=161.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
..++|||+|||+++|+++|+++|+.||.|.++++++|..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccc-ccCCCcceeecCCCccc-cHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecC
Q 006282 108 RDPSI-RKSGTGNIFIKNLDKSI-DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 185 (652)
Q Consensus 108 ~~~~~-~~~~~~~lfV~nLp~~~-t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g 185 (652)
..... ......+|||+|||.++ ++++|+++|+.||.|.+|++..+.+|.++|+|||+|.+.++|.+|++.+||..+.|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 65432 33456789999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccccchhhHH
Q 006282 186 KQVFVGHFLRKQERET 201 (652)
Q Consensus 186 ~~~~v~~~~~~~~~~~ 201 (652)
+.|.|.+..++..+..
T Consensus 254 ~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 254 SHLRVSFCAPGPPGRS 269 (284)
T ss_dssp EECEEEECCSSSCHHH
T ss_pred eEEEEEEecCCCcccc
Confidence 9999999987765443
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=3.9e-28 Score=234.44 Aligned_cols=154 Identities=17% Similarity=0.263 Sum_probs=136.4
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 28 LTTSLYVGDLD-FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 28 ~~~sL~V~nLp-~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
++++|||+||| +++|+++|+++|+.||.|.+|+|.+++ +|||||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998763 589999999999999999999999999999999998
Q ss_pred cCCccc-----------------------c------------cCCCcceeecCCCccccHHHHHhhhccCCCe--eEEEE
Q 006282 107 HRDPSI-----------------------R------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNI--LSCKI 149 (652)
Q Consensus 107 ~~~~~~-----------------------~------------~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I--~~~~v 149 (652)
+..... + .....+|||+|||.++++++|+++|+.||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643210 0 0123469999999999999999999999999 89999
Q ss_pred eeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCee
Q 006282 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 187 (652)
Q Consensus 150 ~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~ 187 (652)
..+. +.++|+|||+|.+.++|.+|+..||+..+.++.
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8876 556799999999999999999999999998763
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.2e-27 Score=225.07 Aligned_cols=157 Identities=24% Similarity=0.535 Sum_probs=143.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i 96 (652)
++++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+|+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 777777754 4689999999999999999 7999999
Q ss_pred CCceeEeecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHH
Q 006282 97 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 175 (652)
Q Consensus 97 ~G~~i~i~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai 175 (652)
.|+.|+|.|+..... .....+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|+
T Consensus 76 ~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred cCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 999999999875432 344678999999999999999999999999999999999 58999999999999999999999
Q ss_pred HHhcCceecCeeeeeccc
Q 006282 176 DKLNGMLINDKQVFVGHF 193 (652)
Q Consensus 176 ~~lng~~l~g~~~~v~~~ 193 (652)
+.+|+..++|+.+.|.++
T Consensus 154 ~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHTTCEETTEECEEEEC
T ss_pred HHcCCCEECCeEEEEEeC
Confidence 999999999999999875
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.4e-27 Score=230.13 Aligned_cols=163 Identities=23% Similarity=0.511 Sum_probs=144.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i 96 (652)
.+++|||+|||+++||++|+++|+.| | .|.++++ ++++|||||+|.+.++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 5666655 456799999999999999999 7999999
Q ss_pred CCceeEeecccCCccc------------------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCc
Q 006282 97 NNKSIRIMYSHRDPSI------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQS 157 (652)
Q Consensus 97 ~G~~i~i~~s~~~~~~------------------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~s 157 (652)
.|++|+|.|+...... ......+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999998754211 1245678999999999999999999999999999999999 48999
Q ss_pred ccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccch
Q 006282 158 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197 (652)
Q Consensus 158 kG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~ 197 (652)
+|||||+|.+.++|.+|++.+|+..++|+.+.|.+..++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999876653
No 30
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=3.9e-29 Score=183.43 Aligned_cols=60 Identities=45% Similarity=0.720 Sum_probs=59.0
Q ss_pred HHHHhhhhchhhhhhccCCcchhhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 006282 570 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 629 (652)
Q Consensus 570 ~~~~~g~~~~~~~~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 629 (652)
||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999987
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.3e-27 Score=241.93 Aligned_cols=163 Identities=24% Similarity=0.431 Sum_probs=145.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
...++++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44668999999999999999965 9999999999999987 6789999999999999999999999999999999
Q ss_pred eEeecccCCccc--------------------------------------------------------------------
Q 006282 101 IRIMYSHRDPSI-------------------------------------------------------------------- 112 (652)
Q Consensus 101 i~i~~s~~~~~~-------------------------------------------------------------------- 112 (652)
|+|.|+..+...
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998754420
Q ss_pred -----------------------------------------ccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEee
Q 006282 113 -----------------------------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151 (652)
Q Consensus 113 -----------------------------------------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~ 151 (652)
......+|||+||+.++++++|+++|+.||.|.+|++..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 111346699999999999999999999999999999997
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHHhcCceec-Ceeeeecccc
Q 006282 152 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFL 194 (652)
Q Consensus 152 ~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~-g~~~~v~~~~ 194 (652)
+ .+|||||+|.+.++|.+|++.+||..+. |+.|.|.+..
T Consensus 242 ~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 G----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5 3689999999999999999999999999 9999998764
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.1e-27 Score=231.30 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=142.8
Q ss_pred CcceEEecCCC-CCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 207 KFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 207 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
..++|||+||+ .++++++|+++|+.||.|.++.++++ ++|||||+|.+.++|..|++.|++..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999875 36899999999999999999999999999999999886
Q ss_pred cchHHHHH---Hh------HHHHHh----------hhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCe--eEEEEe
Q 006282 286 KKSEREQE---LK------GQFEQA----------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI--TSCKVM 344 (652)
Q Consensus 286 ~~~~~~~~---~~------~~~~~~----------~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I--~~v~i~ 344 (652)
.+...... .. ..+... ........++++|||+|||+++|+++|+++|++||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 000000 0000012346789999999999999999999999999 899999
Q ss_pred cCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe----eEEEEec
Q 006282 345 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLYVAVA 387 (652)
Q Consensus 345 ~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~----~l~v~~~ 387 (652)
.+. |.++|||||+|.+.++|.+|+..|||..+.|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 886 56679999999999999999999999999876 6777765
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3e-27 Score=233.23 Aligned_cols=164 Identities=23% Similarity=0.245 Sum_probs=145.6
Q ss_pred CCCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 23 SGNQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
+.+..++++|||+|||+ ++|+++|+++|+.||.|.+|++++|+ +|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34456789999999999 99999999999999999999999875 5799999999999999999999999999999
Q ss_pred EeecccCCccc---------------------------------ccCCCcceeecCCCccccHHHHHhhhccCC-CeeEE
Q 006282 102 RIMYSHRDPSI---------------------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSC 147 (652)
Q Consensus 102 ~i~~s~~~~~~---------------------------------~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I~~~ 147 (652)
+|.|+...... ......+|||+|||.++++++|+++|+.|| .|.+|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 99998743110 012256799999999999999999999999 99999
Q ss_pred EEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceec-Ceeeeeccccc
Q 006282 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLR 195 (652)
Q Consensus 148 ~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~-g~~~~v~~~~~ 195 (652)
++..+ ++|||||+|.+.++|.+|++.+|+..+. |+.|.|.+..+
T Consensus 183 ~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 183 KFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99764 5789999999999999999999999999 99999988754
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=7.7e-27 Score=238.04 Aligned_cols=178 Identities=22% Similarity=0.402 Sum_probs=148.1
Q ss_pred cCcceEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEE
Q 006282 206 TKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 281 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v 281 (652)
...++|||+|||.++++++|+ ++|+.||.|.+|.+++ +|+++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456889999999999999976 8999999999998886 6789999999999999999999999999999999999
Q ss_pred EccccchHHHHHHhHHHH------------------Hhh-----------------------------------------
Q 006282 282 GKAQKKSEREQELKGQFE------------------QAM----------------------------------------- 302 (652)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~------------------~~~----------------------------------------- 302 (652)
.++..+............ ...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998665421111000000 000
Q ss_pred ----------------------------------hhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q 006282 303 ----------------------------------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 348 (652)
Q Consensus 303 ----------------------------------~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~ 348 (652)
........+++|||+|||.++++++|+++|+.||.|++|+++.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122346789999999999999999999999999999999763
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhcCcEec-CeeEEEEeccc
Q 006282 349 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 389 (652)
Q Consensus 349 g~s~g~afV~F~s~~~A~~A~~~lng~~~~-g~~l~v~~~~~ 389 (652)
+|||||+|.+.++|.+|+..|||..|+ |+.|.|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 589999999999999999999999999 99999999864
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=3.8e-27 Score=221.65 Aligned_cols=158 Identities=24% Similarity=0.476 Sum_probs=142.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccC----C-------CeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccC
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~ 275 (652)
..++|||+|||.++++++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35789999999999999999999999 6 677776653 4789999999999999999 89999999
Q ss_pred CceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccE
Q 006282 276 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 354 (652)
Q Consensus 276 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~ 354 (652)
|+.+.+.++..... ....++|||+|||.++++++|+++|++||.|.+++++.+. +|.++||
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999998754421 1235789999999999999999999999999999999985 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 355 afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
|||+|.+.++|.+|++.|||..++|+.|.|.||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999974
No 36
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=9.5e-28 Score=226.54 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=145.4
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
...++|||+|||.++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 4668899999999999999999999999877644444467889999999999999999999 599999999999999987
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A 365 (652)
.+... .....++|||+|||.++++++|+++|+.||.|..+ +.+|.++|||||+|.+.++|
T Consensus 90 ~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 90 GRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHH
T ss_pred Ccccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHH
Confidence 65321 12245789999999999999999999999988766 66789999999999999999
Q ss_pred HHHHHHhcCcEecCeeEEEEecccH
Q 006282 366 SRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 366 ~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.+|+..|||..++|+.|.|.|+.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999764
No 37
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=2.3e-26 Score=231.52 Aligned_cols=160 Identities=25% Similarity=0.455 Sum_probs=145.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
......++|||+|||+++|+++|+++|+.||.|.+|++.+ ++|||||.|.+.++|.+|++.+|+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 3445678999999999999999999999999999999964 3589999999999999999999999999999999
Q ss_pred ecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHh-cCce
Q 006282 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL-NGML 182 (652)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l-ng~~ 182 (652)
.|+.. ..+|||+|||.++++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|+..+ ++..
T Consensus 91 ~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 91 RFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp EECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred eeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 99874 45899999999999999999999999999999999999999999999999999999999999 5555
Q ss_pred ec---Ceeeeecccccch
Q 006282 183 IN---DKQVFVGHFLRKQ 197 (652)
Q Consensus 183 l~---g~~~~v~~~~~~~ 197 (652)
+. ++.+.|.+.....
T Consensus 163 ~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ESSSSCCBCEEEECCCEE
T ss_pred EecCCCceEEEeeccccC
Confidence 54 8889988876543
No 38
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=9e-27 Score=224.54 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=142.1
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 29 TTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 29 ~~sL~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
+++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999999875 5799999999999999999999999999999999987
Q ss_pred CCcccc---------------------------------cCCCcceeecCCCccccHHHHHhhhccCC-CeeEEEEeeCC
Q 006282 108 RDPSIR---------------------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDG 153 (652)
Q Consensus 108 ~~~~~~---------------------------------~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG-~I~~~~v~~~~ 153 (652)
...... .....+|||+|||.++++++|+++|+.|| .|.+|++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 542110 12266799999999999999999999999 9999999764
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHhcCceec-Ceeeeeccccc
Q 006282 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLR 195 (652)
Q Consensus 154 ~g~skG~afV~F~t~e~A~~Ai~~lng~~l~-g~~~~v~~~~~ 195 (652)
++|+|||+|.+.++|.+|++.+|+..+. |+.+.|.+..+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999988654
No 39
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=2.6e-26 Score=226.47 Aligned_cols=177 Identities=21% Similarity=0.318 Sum_probs=146.6
Q ss_pred cCcceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcc
Q 006282 206 TKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (652)
Q Consensus 206 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a 284 (652)
...++|||+|||. ++++++|+++|+.||.|.++.++++. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4678899999999 99999999999999999999999875 679999999999999999999999999999999988
Q ss_pred ccchHHH-------HHHhHHHHHhh----------hhcccccccceeeecCCCCCCCHHHHHHHhhhcC-CeeEEEEecC
Q 006282 285 QKKSERE-------QELKGQFEQAM----------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRD 346 (652)
Q Consensus 285 ~~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG-~I~~v~i~~~ 346 (652)
..+.... ......+.... ........+++|||+|||.++++++|+++|+.|| .|.+|+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 6542100 00000000000 0001123468899999999999999999999999 9999999765
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhcCcEec-CeeEEEEecccH
Q 006282 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 390 (652)
Q Consensus 347 ~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~-g~~l~v~~~~~~ 390 (652)
++|||||+|.+.++|.+|+..|||..++ |+.|.|.|++++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3789999999999999999999999999 999999999753
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=9e-26 Score=227.15 Aligned_cols=156 Identities=31% Similarity=0.547 Sum_probs=143.7
Q ss_pred cCcceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccc
Q 006282 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (652)
Q Consensus 206 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~ 285 (652)
...++|||+|||.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45678999999999999999999999999999998643 7899999999999999999999999999999999885
Q ss_pred cchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHH
Q 006282 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (652)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A 365 (652)
. +++|||+|||..+|+++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|
T Consensus 95 ~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 H------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp C------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred c------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 3 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEec---CeeEEEEecccH
Q 006282 366 SRALAEMN-GKMIV---SKPLYVAVAQRK 390 (652)
Q Consensus 366 ~~A~~~ln-g~~~~---g~~l~v~~~~~~ 390 (652)
.+|+..|| +..+. +++|.|.++...
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999995 55554 999999998754
No 41
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.4e-26 Score=223.07 Aligned_cols=178 Identities=22% Similarity=0.423 Sum_probs=145.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhccC----C-------CeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccC
Q 006282 207 KFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (652)
Q Consensus 207 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~ 275 (652)
..++|||+|||.++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 45789999999999999999999999 4 5555554 355899999999999999999 89999999
Q ss_pred CceEEEEccccchHHHHHHhHH--HHHhhhhcccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCc
Q 006282 276 DREWYVGKAQKKSEREQELKGQ--FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISK 352 (652)
Q Consensus 276 g~~l~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~ 352 (652)
|+.|.|.++............. ..............++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999986542211000000 00000111122456899999999999999999999999999999999985 89999
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 353 g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
|||||+|.+.++|.+|+..|||..++|+.|.|.++.++
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999999865
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=2.5e-26 Score=221.45 Aligned_cols=175 Identities=20% Similarity=0.302 Sum_probs=144.8
Q ss_pred cceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEcccc
Q 006282 208 FNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (652)
Q Consensus 208 ~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~ 286 (652)
.++|||+|||. ++++++|+++|+.||.|.++.+..+. +|||||+|.+.++|..|++.|++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57899999999 99999999999999999999998875 67999999999999999999999999999999998865
Q ss_pred chHHHHHHh-------HHHHHh--------h--hhcccccccceeeecCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCC
Q 006282 287 KSEREQELK-------GQFEQA--------M--KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPS 348 (652)
Q Consensus 287 ~~~~~~~~~-------~~~~~~--------~--~~~~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG-~I~~v~i~~~~~ 348 (652)
......... ..+... . .......++++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 421100000 000000 0 0000123478899999999999999999999999 9999999875
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhcCcEec-CeeEEEEecccH
Q 006282 349 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 390 (652)
Q Consensus 349 g~s~g~afV~F~s~~~A~~A~~~lng~~~~-g~~l~v~~~~~~ 390 (652)
++|||||+|.+.++|.+|+..|||..++ |+.|.|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998753
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=8.7e-21 Score=165.31 Aligned_cols=104 Identities=28% Similarity=0.471 Sum_probs=74.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.+++|||+|||+++||++|+++|+.||.|.+|+|++|. ++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999995 4589999999999999999999999999999999999987
Q ss_pred CCcc------cccCCCcceeecCCCccccHHH
Q 006282 108 RDPS------IRKSGTGNIFIKNLDKSIDHKA 133 (652)
Q Consensus 108 ~~~~------~~~~~~~~lfV~nLp~~~t~~~ 133 (652)
.... .+.....+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 5432 2233455799999999998764
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1.8e-20 Score=173.38 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=112.7
Q ss_pred EEEeeCCCCCcceeEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeec
Q 006282 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317 (652)
Q Consensus 238 ~~i~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 317 (652)
+.++.+.. +++||+||+|.+.++|.+|++.+++....+..+.+........... ..............++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEe
Confidence 45555543 6899999999999999999988876544444444332221100000 00000111223456899999
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 318 nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
|||.++++++|+++|+.||.|.+|+|+.|. +|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..+
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999985 7999999999999999999999999999999999999999854
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=5.7e-20 Score=155.25 Aligned_cols=83 Identities=41% Similarity=0.631 Sum_probs=79.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
-..+++|||+|||+++||++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
++.
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 863
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=152.45 Aligned_cols=82 Identities=38% Similarity=0.639 Sum_probs=78.2
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
.+++++|||+|||.++|+++|+++|++||.|.+|+|++|. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5678999999999999999999999999999999999885 699999999999999999999999999999999999999
Q ss_pred ccc
Q 006282 387 AQR 389 (652)
Q Consensus 387 ~~~ 389 (652)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3e-19 Score=165.09 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=111.6
Q ss_pred EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe-------ecccC----CcccccCCCcceeecCCC
Q 006282 58 SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-------MYSHR----DPSIRKSGTGNIFIKNLD 126 (652)
Q Consensus 58 ~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i-------~~s~~----~~~~~~~~~~~lfV~nLp 126 (652)
+++|.++.. +++|||||+|.+.++|++|++.++.....+..+.+ .+... ..........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567888755 68999999999999999999887753222222222 11111 111223446789999999
Q ss_pred ccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccch
Q 006282 127 KSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197 (652)
Q Consensus 127 ~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~~ 197 (652)
.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|..|++.+|+..+.|+.|.|.+..+..
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999998 589999999999999999999999999999999999999987654
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=1.2e-19 Score=166.15 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=113.3
Q ss_pred CCcceeEEEeeCCHHHHHHHHHHH-CCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCC
Q 006282 246 GKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324 (652)
Q Consensus 246 g~~~g~~fV~f~~~~~A~~Ai~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 324 (652)
...+|+++|+|.+.++|.+|++.+ ++..+.| .+.+.++..+........ ..............++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 366899999999999999999999 9999999 999998865432100000 000001122234568999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 325 e~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|||..++|++|.|.|+.++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999987 6899999999999999999999999999999999999764
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=150.30 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=79.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
.+.++|||+|||+++||++|+++|++||.|.+|+|++|+.|++++|||||.|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 006282 107 HRD 109 (652)
Q Consensus 107 ~~~ 109 (652)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=5.7e-19 Score=153.74 Aligned_cols=108 Identities=58% Similarity=0.979 Sum_probs=75.6
Q ss_pred CCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeeccccc
Q 006282 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (652)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~ 195 (652)
+.++|||+|||.++++++|+++|+.||.|.+|+|..+.. .++|||||+|.+.++|.+|++.+++..+.|+.|.|.+...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 456899999999999999999999999999999999864 4899999999999999999999999999999999998877
Q ss_pred chhhHHHh--hccCcceEEecCCCCCCCHHH
Q 006282 196 KQERETVA--IKTKFNNVFVKNLDESTTDED 224 (652)
Q Consensus 196 ~~~~~~~~--~~~~~~~l~V~nlp~~~t~~~ 224 (652)
+..+.... .....++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 65543322 235667899999999998764
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=148.59 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=77.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC-CcccCCceeEeecc
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN-FTPLNNKSIRIMYS 106 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln-~~~i~G~~i~i~~s 106 (652)
+.+|||+|||+++||++|+++|+.|| +|.+|+|++|+.|++++|||||+|.+.++|++|++.++ +..|.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999774 56799999999999
Q ss_pred cCCcc
Q 006282 107 HRDPS 111 (652)
Q Consensus 107 ~~~~~ 111 (652)
...+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=148.61 Aligned_cols=84 Identities=15% Similarity=0.350 Sum_probs=77.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc----ccCC
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT----PLNN 98 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~--V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~----~i~G 98 (652)
......||||+|||+++||++|+++|++||. |.+|++++|+.|++|+|||||+|.+.++|++|++.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456789999999999999999999999994 789999999999999999999999999999999999986 4899
Q ss_pred ceeEeecccC
Q 006282 99 KSIRIMYSHR 108 (652)
Q Consensus 99 ~~i~i~~s~~ 108 (652)
|+|+|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 53
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=146.93 Aligned_cols=90 Identities=12% Similarity=0.266 Sum_probs=83.1
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
+.++|||+||++++++++|+++|++||.|++|+|++|. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46789999999999999999999999999999999886 59999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHH
Q 006282 389 RKEERRARLQA 399 (652)
Q Consensus 389 ~~~~r~~~~~~ 399 (652)
....+....+.
T Consensus 85 ~~~~~~~~~~~ 95 (110)
T 3s8s_A 85 KGQQRMKYYEL 95 (110)
T ss_dssp TTHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 88777655444
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=144.48 Aligned_cols=87 Identities=25% Similarity=0.460 Sum_probs=81.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
.+.....+.++|||+|||+++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 35555677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccc
Q 006282 101 IRIMYSH 107 (652)
Q Consensus 101 i~i~~s~ 107 (652)
|+|.|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999874
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=142.75 Aligned_cols=84 Identities=29% Similarity=0.477 Sum_probs=77.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 006282 106 SHRD 109 (652)
Q Consensus 106 s~~~ 109 (652)
+...
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8765
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=145.88 Aligned_cols=92 Identities=32% Similarity=0.519 Sum_probs=85.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
+.....+.++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|+|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCcccc
Q 006282 102 RIMYSHRDPSIR 113 (652)
Q Consensus 102 ~i~~s~~~~~~~ 113 (652)
+|.|+......+
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998765443
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=144.67 Aligned_cols=91 Identities=27% Similarity=0.495 Sum_probs=84.7
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=141.96 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=81.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
.++++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 006282 107 HRDPS 111 (652)
Q Consensus 107 ~~~~~ 111 (652)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 59
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2e-18 Score=157.99 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=111.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHhhc-CCcccCCceeEeecccCC--------------cccccCCCcceeecCCCccccH
Q 006282 67 TRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIRIMYSHRD--------------PSIRKSGTGNIFIKNLDKSIDH 131 (652)
Q Consensus 67 t~~s~g~AfV~F~~~e~A~~Al~~l-n~~~i~G~~i~i~~s~~~--------------~~~~~~~~~~lfV~nLp~~~t~ 131 (652)
..+.+|+++|+|.+.++|++|++.+ |+..+.| .|++.++... .........+|||+|||.++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 9999987652 1233445678999999999999
Q ss_pred HHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006282 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (652)
Q Consensus 132 ~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~l~g~~~~v~~~~~~ 196 (652)
++|+++|+.||.|.+|++..+ ++|||||+|.+.++|..|++.+|+..+.|+.|.|.+..++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999886 7899999999999999999999999999999999887654
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.4e-18 Score=140.29 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=79.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++++++|+++|++||+|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 006282 105 YSH 107 (652)
Q Consensus 105 ~s~ 107 (652)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 61
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.5e-18 Score=149.85 Aligned_cols=105 Identities=23% Similarity=0.443 Sum_probs=94.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
+.++++|||+|||+++|+++|+++|+.||.|.+|++.++ ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999976 45589999999999999999999999999999999999
Q ss_pred ccCCcccccCCCcceeecCCCccccHHHHHhhhccCCC
Q 006282 106 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 143 (652)
Q Consensus 106 s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~ 143 (652)
+...... ++++...++++|.++|+.||-
T Consensus 82 a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 8865432 578888999999999999973
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=142.40 Aligned_cols=89 Identities=18% Similarity=0.432 Sum_probs=82.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
+....+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecccCCccc
Q 006282 103 IMYSHRDPSI 112 (652)
Q Consensus 103 i~~s~~~~~~ 112 (652)
|.|+......
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=143.79 Aligned_cols=88 Identities=27% Similarity=0.503 Sum_probs=82.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL-SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~-~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
+.....++++|||+|||+++||++|+++|+.||+|. +|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 2 ss~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 2 SSGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 344566789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ----eEeecccCC
Q 006282 101 ----IRIMYSHRD 109 (652)
Q Consensus 101 ----i~i~~s~~~ 109 (652)
|+|.|+...
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998764
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=141.63 Aligned_cols=87 Identities=28% Similarity=0.369 Sum_probs=82.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
....+.++++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
+|.|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=144.61 Aligned_cols=89 Identities=19% Similarity=0.330 Sum_probs=83.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
+.....+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 33445668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCc
Q 006282 102 RIMYSHRDP 110 (652)
Q Consensus 102 ~i~~s~~~~ 110 (652)
+|.|+....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998654
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=142.31 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=82.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..++++|||+|||+++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCccc
Q 006282 106 SHRDPSI 112 (652)
Q Consensus 106 s~~~~~~ 112 (652)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876554
No 67
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=8.1e-18 Score=146.56 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=82.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=150.84 Aligned_cols=89 Identities=27% Similarity=0.400 Sum_probs=83.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.......++|||+|||.++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=6.5e-18 Score=137.88 Aligned_cols=81 Identities=36% Similarity=0.575 Sum_probs=78.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
+.+|||+|||.++|+++|+++|+.||+|.++++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 006282 109 D 109 (652)
Q Consensus 109 ~ 109 (652)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=143.38 Aligned_cols=89 Identities=17% Similarity=0.334 Sum_probs=83.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....++++|||+|||+++|+++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 71
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.8e-17 Score=144.35 Aligned_cols=92 Identities=27% Similarity=0.475 Sum_probs=84.7
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCcccc
Q 006282 102 RIMYSHRDPSIR 113 (652)
Q Consensus 102 ~i~~s~~~~~~~ 113 (652)
+|.|+...+...
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998765443
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=140.37 Aligned_cols=86 Identities=21% Similarity=0.423 Sum_probs=80.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....+.++|||+|||+++|+++|+++|+.||+|.+|++.+|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445668999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+...+
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987653
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=9.4e-18 Score=143.86 Aligned_cols=90 Identities=19% Similarity=0.346 Sum_probs=83.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc---CC
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---NN 98 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i---~G 98 (652)
......+.++|||+|||.++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 444566789999999999999999999999999999999999999999999999999999999999999999887 89
Q ss_pred ceeEeecccCCcc
Q 006282 99 KSIRIMYSHRDPS 111 (652)
Q Consensus 99 ~~i~i~~s~~~~~ 111 (652)
++|+|.|+.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999986543
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=141.16 Aligned_cols=85 Identities=25% Similarity=0.510 Sum_probs=78.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++++++|+++|+.||+|.+|++++|.. ++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344556789999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred Eeeccc
Q 006282 102 RIMYSH 107 (652)
Q Consensus 102 ~i~~s~ 107 (652)
+|.|+.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999876
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=144.16 Aligned_cols=90 Identities=28% Similarity=0.417 Sum_probs=83.8
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
+.....+.++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 44456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987644
No 76
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.2e-18 Score=142.01 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
.+|||+|||+++|+++|+++|+.|| .|.++++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CCcc
Q 006282 108 RDPS 111 (652)
Q Consensus 108 ~~~~ 111 (652)
..+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 77
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=141.79 Aligned_cols=85 Identities=29% Similarity=0.512 Sum_probs=80.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
....+++|||+|||.++|+++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 006282 105 YSHRD 109 (652)
Q Consensus 105 ~s~~~ 109 (652)
|+...
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=8.4e-18 Score=141.35 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=79.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
++++|||+|||.++++++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 006282 108 RDP 110 (652)
Q Consensus 108 ~~~ 110 (652)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=9e-18 Score=149.01 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=83.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
....+.++++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|+|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCC
Q 006282 102 RIMYSHRD 109 (652)
Q Consensus 102 ~i~~s~~~ 109 (652)
+|.|+..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998764
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=140.44 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--------VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~--------i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
..++.+.++|||+|||+++|+++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCceeEeeccc
Q 006282 95 PLNNKSIRIMYSH 107 (652)
Q Consensus 95 ~i~G~~i~i~~s~ 107 (652)
.|.|+.|+|.|++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=141.60 Aligned_cols=85 Identities=29% Similarity=0.560 Sum_probs=80.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV-RVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i-~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
.++++|||+|||+++|+++|+++|+.||+|.+| ++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 006282 106 SHRDPS 111 (652)
Q Consensus 106 s~~~~~ 111 (652)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986543
No 82
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=140.75 Aligned_cols=86 Identities=26% Similarity=0.504 Sum_probs=80.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS---TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~---t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.++++|||+|||+++|+++|+++|+.||+|.+|++.+|.. |++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999987 7799999999999999999999999999999999999
Q ss_pred ecccCCccc
Q 006282 104 MYSHRDPSI 112 (652)
Q Consensus 104 ~~s~~~~~~ 112 (652)
.|+......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.8e-17 Score=140.11 Aligned_cols=88 Identities=24% Similarity=0.385 Sum_probs=81.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
...+..+.++|||+|||+++|+++|+++|+.|| |.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344556789999999999999999999999997 999999999999999999999999999999999 799999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999987654
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=143.71 Aligned_cols=90 Identities=27% Similarity=0.372 Sum_probs=82.5
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
........++|||+|||+++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.+|+ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 344556789999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999765443
No 85
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=141.54 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=83.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
........++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++. |+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999866543
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=142.15 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+...+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987643
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.8e-18 Score=146.76 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=79.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 006282 104 MYSH 107 (652)
Q Consensus 104 ~~s~ 107 (652)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 88
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=142.28 Aligned_cols=88 Identities=16% Similarity=0.309 Sum_probs=82.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC------CcccC
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN------FTPLN 97 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln------~~~i~ 97 (652)
....+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.+| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CceeEeecccCCcc
Q 006282 98 NKSIRIMYSHRDPS 111 (652)
Q Consensus 98 G~~i~i~~s~~~~~ 111 (652)
|+.|+|.|+.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999986644
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=3.7e-17 Score=139.86 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=80.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC---cee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN---KSI 101 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G---~~i 101 (652)
...++++|||+|||+++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..+.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 79999999999999999999999999999998 999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+...+.
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-17 Score=133.78 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
.-.+..|||+||++.+||++|+++|++||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 34588999999999999999999999999999999854 679999999999999999999999999999999987
Q ss_pred c
Q 006282 106 S 106 (652)
Q Consensus 106 s 106 (652)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 6
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=140.42 Aligned_cols=86 Identities=30% Similarity=0.424 Sum_probs=80.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc-cCCceeE
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP-LNNKSIR 102 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~-~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~-i~G~~i~ 102 (652)
...++++|||+|||+++|+++|+++|+. ||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+.. |.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4556899999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876543
No 92
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=141.42 Aligned_cols=89 Identities=21% Similarity=0.473 Sum_probs=82.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEee-CCCCCcccEEEEEeCCHHHHHHHHhhc-CCcccCCcee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-LSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d-~~t~~s~g~AfV~F~~~e~A~~Al~~l-n~~~i~G~~i 101 (652)
......++|||+|||+++|+++|+++|+.||.|.+|+++++ ..+++++|||||+|.+.++|++|++.| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34557899999999999999999999999999999999999 789999999999999999999999999 9999999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+..+...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876544
No 93
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=8e-18 Score=150.15 Aligned_cols=87 Identities=17% Similarity=0.341 Sum_probs=80.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc----c
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT----P 95 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~--i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~----~ 95 (652)
........++|||+|||+++||++|+++|+.||.|.+ |+|++|+.+++++|||||+|.+. +|.+|++.||+. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3344567889999999999999999999999999977 99999999999999999999999 999999999999 9
Q ss_pred cCCceeEeecccCC
Q 006282 96 LNNKSIRIMYSHRD 109 (652)
Q Consensus 96 i~G~~i~i~~s~~~ 109 (652)
|.|+.|+|.|+...
T Consensus 95 ~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 IDGKTINVEFAKGS 108 (131)
T ss_dssp GGGCCCCCEECCCS
T ss_pred CCCEEEEEEECCCC
Confidence 99999999998754
No 94
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=139.00 Aligned_cols=89 Identities=26% Similarity=0.404 Sum_probs=80.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
........++|||+|||+++|+++|+++|+.||+|.+|++++|..+ ++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3345567899999999999999999999999999999999998554 68999999999999999999999999999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876543
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=139.89 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=73.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC--cccCCceeE
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSIR 102 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~--~~i~G~~i~ 102 (652)
.+.++++|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456899999999999999999999999999999999875 48999999999999999998864 689999999
Q ss_pred eecccCCccc
Q 006282 103 IMYSHRDPSI 112 (652)
Q Consensus 103 i~~s~~~~~~ 112 (652)
|.|++.....
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 96
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=139.12 Aligned_cols=87 Identities=26% Similarity=0.489 Sum_probs=81.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++++| +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344567899999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999987654
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=8.3e-18 Score=142.39 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCccEEEEcCCCC------CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC-c
Q 006282 27 FLTTSLYVGDLDF------NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-K 99 (652)
Q Consensus 27 ~~~~sL~V~nLp~------~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G-~ 99 (652)
..+++|||+|||. ++++++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eeEeecccC
Q 006282 100 SIRIMYSHR 108 (652)
Q Consensus 100 ~i~i~~s~~ 108 (652)
.|+|.|+..
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999998864
No 98
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=140.98 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=73.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcC-CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhc-CcEecCeeEEEEecc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN-GKMIVSKPLYVAVAQ 388 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG-~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~ln-g~~~~g~~l~v~~~~ 388 (652)
.+|||+|||.++|+++|+++|+.|| .|++|+|++|. +|.++|||||+|.+.++|.+|++.++ +..++|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999885 68999999999999999999999874 567999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 99
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=140.10 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=73.1
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCC--eeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCc----EecCeeEE
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKPLY 383 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~--I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~----~~~g~~l~ 383 (652)
-.+|||+|||+++|+++|+++|++||. |.+|++++|. +|++||||||+|.+.++|.+|++.|||. .++|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 357999999999999999999999995 6799999886 6999999999999999999999999997 58999999
Q ss_pred EEeccc
Q 006282 384 VAVAQR 389 (652)
Q Consensus 384 v~~~~~ 389 (652)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.2e-17 Score=131.39 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=71.7
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
.+..|||+||++.+|+++|+++|.+||.|.++++.. +||||||+|.+.++|.+|++.||+..+.|++|+|++|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 356799999999999999999999999999999976 599999999999999999999999999999999999964
Q ss_pred HH
Q 006282 390 KE 391 (652)
Q Consensus 390 ~~ 391 (652)
.+
T Consensus 81 ~~ 82 (89)
T 2wbr_A 81 NE 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 101
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=140.76 Aligned_cols=92 Identities=25% Similarity=0.420 Sum_probs=81.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|||+|||+++|+++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|++.||+..|.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6789999999999999999999999999999999999765
Q ss_pred ccc--------ccCCCcceeecCCC
Q 006282 110 PSI--------RKSGTGNIFIKNLD 126 (652)
Q Consensus 110 ~~~--------~~~~~~~lfV~nLp 126 (652)
+.. +.....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 422 22235679999986
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.1e-18 Score=138.00 Aligned_cols=82 Identities=23% Similarity=0.418 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
+.++++|||+|||+++++++|+++|+.||+|.++++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 006282 106 SH 107 (652)
Q Consensus 106 s~ 107 (652)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.6e-17 Score=134.72 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=75.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++|+++|+++|++||.|.+|++.+|+.+++++|||||+|.+.++|++|++ +++..|+|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999997 57788999999998
Q ss_pred cc
Q 006282 105 YS 106 (652)
Q Consensus 105 ~s 106 (652)
|+
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=141.91 Aligned_cols=84 Identities=25% Similarity=0.458 Sum_probs=79.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....++|||+|||.++|+++|+++|+.||.|.+|++++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006282 106 SHRDP 110 (652)
Q Consensus 106 s~~~~ 110 (652)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97654
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=136.95 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=80.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++|+++|+++|+.||.|.+|+|++|.. .++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445566789999999999999999999999999999999999865 388999999999999999999999999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+...+.
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999987654
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=136.52 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=80.7
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++ ++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 33445668999999999999999999999999999999999999999999999999999999999999 4578999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999876544
No 107
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=5.8e-17 Score=135.03 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..+.++|||+|||+++|+++|+++|+.||+|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999985 788999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 006282 106 SHRDPS 111 (652)
Q Consensus 106 s~~~~~ 111 (652)
++....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 887543
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=3.1e-17 Score=133.82 Aligned_cols=79 Identities=34% Similarity=0.650 Sum_probs=75.7
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999988 57899999999999999999999999999999999999999875
No 109
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=134.06 Aligned_cols=81 Identities=28% Similarity=0.539 Sum_probs=75.3
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46789999999999999999999999999999999884 88999999999999999999999999999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=146.88 Aligned_cols=87 Identities=29% Similarity=0.487 Sum_probs=80.9
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 20 ~~~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
.+......+.++|||+|||.++|+++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33555667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecc
Q 006282 100 SIRIMYS 106 (652)
Q Consensus 100 ~i~i~~s 106 (652)
.|+|.|+
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999875
No 111
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.1e-17 Score=141.22 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.......++|||+|||.++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.++ ..|.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999999765 899999999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.|+....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987654
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=4.2e-17 Score=134.93 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=76.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
..++|||+|||+++|+++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|+ .+|+..|.|+.|+|.|++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3689999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred C
Q 006282 108 R 108 (652)
Q Consensus 108 ~ 108 (652)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 113
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=139.06 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||+++|+++|+++|+.||+|.+|++++|.. ++++|||||+|.+.++|++|++ +|+..|.|+.|+|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999987 9999999999999999999999 8999999999999987
Q ss_pred cC
Q 006282 107 HR 108 (652)
Q Consensus 107 ~~ 108 (652)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 114
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.5e-17 Score=141.27 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=81.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|||+++|+++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+...+
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9987653
No 115
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=139.27 Aligned_cols=87 Identities=24% Similarity=0.408 Sum_probs=80.5
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......++++|||+|||+++|+++|+++|+.||.|.+|+|++|+ +++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 44455678999999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred EeecccCC
Q 006282 102 RIMYSHRD 109 (652)
Q Consensus 102 ~i~~s~~~ 109 (652)
+|.|+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998753
No 116
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=138.39 Aligned_cols=88 Identities=25% Similarity=0.436 Sum_probs=81.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-RRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t-~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
..+..+.++|||+|||+++|+++|+++|+.|| |.+|+|++|+.+ ++++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455679999999999999999999999999 999999999988 999999999999999999999 899999999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|+......
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 117
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=149.60 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=77.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 118
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=136.35 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=77.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G 98 (652)
..+....++|||+|||+++++++|+ ++|++||+|.+|+|.+|+.+ +|||||+|.+.++|++|++.||+..|.|
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3445567899999999999999999 99999999999999999776 6899999999999999999999999999
Q ss_pred ceeEeecccCCc
Q 006282 99 KSIRIMYSHRDP 110 (652)
Q Consensus 99 ~~i~i~~s~~~~ 110 (652)
++|+|.|++..+
T Consensus 80 r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KKILVSLATGAS 91 (96)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999987653
No 119
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=5.8e-17 Score=139.15 Aligned_cols=83 Identities=30% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|||+++|+++|+++|+.||+|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eccc
Q 006282 104 MYSH 107 (652)
Q Consensus 104 ~~s~ 107 (652)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 120
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.1e-17 Score=140.48 Aligned_cols=88 Identities=23% Similarity=0.388 Sum_probs=82.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--------SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~--------~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~ 95 (652)
......++|||+|||+++|+++|+++|+.||.|. .|+|++|+.+++++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred cCCceeEeecccCCcc
Q 006282 96 LNNKSIRIMYSHRDPS 111 (652)
Q Consensus 96 i~G~~i~i~~s~~~~~ 111 (652)
|.|+.|+|.|+.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=137.06 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
...+...++|||+|||+++||++|+++|+.||.| +|+|++|+ +++++|||||+|.+.++|++||+ +|+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4456678999999999999999999999999955 99999998 89999999999999999999996 799999999999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99887654
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=138.02 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=79.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
.....++|||+|||+++|+++|+++|+.||.|.++++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 006282 105 YSHRD 109 (652)
Q Consensus 105 ~s~~~ 109 (652)
|+...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 123
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=3.7e-17 Score=152.05 Aligned_cols=139 Identities=19% Similarity=0.337 Sum_probs=79.0
Q ss_pred EeeCCHHHHHHHHHHHCCCccC--CceEEEEccccchHHHHHHhHH----HHHhhhhcccccccceeeecCCCCCCCHHH
Q 006282 254 VNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQ----FEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327 (652)
Q Consensus 254 V~f~~~~~A~~Ai~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nlp~~~te~~ 327 (652)
..|++.+++..++..+++.... |+.....+.... +....... .............+++|||+|||..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTRE--AIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccc--cccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788999999999888876654 444443332111 10000000 000011112234567899999999999999
Q ss_pred HHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHHHH
Q 006282 328 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394 (652)
Q Consensus 328 L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~r~ 394 (652)
|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..+..+.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9999999999999999988 488999999999999999999999999999999999999998765443
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=135.67 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcE--ecCeeEEE
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYV 384 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~--~~g~~l~v 384 (652)
...++++|||+|||+++|+++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.||+.. +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3456789999999999999999999999999999999864 8999999999999999999999875 78999999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999875
No 125
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.7e-17 Score=131.34 Aligned_cols=75 Identities=25% Similarity=0.471 Sum_probs=72.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
+|||+|||+++|+++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++ +|+..|.|++|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998 9999999999999875
No 126
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=137.59 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc--CcEecCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln--g~~~~g~~l~v~ 385 (652)
....++|||+|||+++++++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.++ +..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999999986 7999999999999999999886 478999999999
Q ss_pred ecccHH
Q 006282 386 VAQRKE 391 (652)
Q Consensus 386 ~~~~~~ 391 (652)
|++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998653
No 127
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.4e-17 Score=137.05 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=78.7
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=138.72 Aligned_cols=84 Identities=30% Similarity=0.540 Sum_probs=79.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc
Q 006282 107 HRDP 110 (652)
Q Consensus 107 ~~~~ 110 (652)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8654
No 129
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=134.38 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc--cCCcee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP--LNNKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~--i~G~~i 101 (652)
....++++|||+|||.++||++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.||+.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445789999999999999999999999999999999975 35899999999999999999999775 789999
Q ss_pred EeecccCC
Q 006282 102 RIMYSHRD 109 (652)
Q Consensus 102 ~i~~s~~~ 109 (652)
+|.||+..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999864
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.9e-17 Score=140.21 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=77.7
Q ss_pred ccceeeecCCCC------CCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecC-ee
Q 006282 310 QGLNLYIKNLGD------SIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KP 381 (652)
Q Consensus 310 ~~~~l~V~nlp~------~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g-~~ 381 (652)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 99999999999999999999999887 49999999999999999999999999999999 99
Q ss_pred EEEEecccHHH
Q 006282 382 LYVAVAQRKEE 392 (652)
Q Consensus 382 l~v~~~~~~~~ 392 (652)
|.|.++.+++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987643
No 131
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=133.00 Aligned_cols=84 Identities=18% Similarity=0.412 Sum_probs=78.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
......++|||+|||+++|+++|+++|+.| .|.+|++++| .+++++|||||+|.+.++|++|++ +|+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345568999999999999999999999999 9999999999 789999999999999999999999 9999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|++..+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9988754
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=136.15 Aligned_cols=86 Identities=16% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|..+ ++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344557899999999999999999999999999999999654 56889999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999987644
No 133
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=133.93 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=77.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC-cccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~-s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
..++|||+|||+++|+++|+++|+.||.|.+|++.+|..++. ++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999988766 9999999999999999999999999999999999998
Q ss_pred cCC
Q 006282 107 HRD 109 (652)
Q Consensus 107 ~~~ 109 (652)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 134
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=132.35 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
++|||+|||+++|+++|+++|++||+|.++++.+|+.+++++|||||+|.+.++|++|++.++ ..+.|+.|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 9999999999886
No 135
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=7e-17 Score=132.34 Aligned_cols=80 Identities=29% Similarity=0.484 Sum_probs=75.5
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|++||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999887 57889999999999999999999999999999999999997
Q ss_pred c
Q 006282 388 Q 388 (652)
Q Consensus 388 ~ 388 (652)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=137.52 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=77.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++|+++|+++|+.||.|.+|+|+++..|+++|||||+|.+.++|.+|+. +|+..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34578999999999999999999999999999999999889999999999999999999999 99999999999999988
Q ss_pred cHHHH
Q 006282 389 RKEER 393 (652)
Q Consensus 389 ~~~~r 393 (652)
.-..+
T Consensus 88 ~~~~~ 92 (103)
T 1s79_A 88 DYFAK 92 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
No 137
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.8e-17 Score=142.77 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=82.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....++++|||+|||+++|+++|+++|+.||.|.+|+|.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997654
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.1e-17 Score=137.10 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=71.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcC--CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG--~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.+|||+|||.++++++|+++|+.|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999885 89999999999999999999999999999999999999988
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 139
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1e-16 Score=141.52 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=81.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|||+++++++|+++|+.||+|.+|++++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9988654
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=134.78 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=77.0
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 006282 389 R 389 (652)
Q Consensus 389 ~ 389 (652)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=135.99 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS-VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~-i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
......++|||+|||+++||++|+++|+.||.|.+ |+|++| .+++++|||||+|.+.++|++|++. |+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456799999999999999999999999999998 999998 7899999999999999999999997 99999999999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99887643
No 142
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=9.9e-17 Score=134.75 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=77.9
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
.++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5689999999999999999999999999999999885 689999999999999999999999999999999999999987
Q ss_pred HHHH
Q 006282 390 KEER 393 (652)
Q Consensus 390 ~~~r 393 (652)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 143
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.1e-17 Score=135.83 Aligned_cols=83 Identities=30% Similarity=0.474 Sum_probs=78.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
..+.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8763
No 144
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.9e-17 Score=137.77 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=76.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....++|||+|||+++|+++|+++|+.||.|.++++++++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 006282 106 SH 107 (652)
Q Consensus 106 s~ 107 (652)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 145
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=139.12 Aligned_cols=86 Identities=23% Similarity=0.449 Sum_probs=75.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL-STRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~-~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
........++|||+|||.++|+++|+++|+.|| |.+|++.+|+ .+++++|||||+|.+.++|++|+ .||+..|.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334556789999999999999999999999999 9999999998 68999999999999999999999 79999999999
Q ss_pred eEeecccCC
Q 006282 101 IRIMYSHRD 109 (652)
Q Consensus 101 i~i~~s~~~ 109 (652)
|+|.|+...
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998764
No 146
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=136.31 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=73.9
Q ss_pred CCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc--ccCCce
Q 006282 24 GNQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKS 100 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~--~i~G~~ 100 (652)
....++++|||+|||+ ++||++|+++|++||.|.+|+|.+++ |||||+|.+.++|++|++.||+. .|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455789999999999 99999999999999999999998753 79999999999999999998864 499999
Q ss_pred eEeecccCCccc
Q 006282 101 IRIMYSHRDPSI 112 (652)
Q Consensus 101 i~i~~s~~~~~~ 112 (652)
|+|.|++....+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 1x4d_A 84 VRVHLSQKYKRI 95 (102)
T ss_dssp CEEEEECCCTTS
T ss_pred EEEEECCCCCCC
Confidence 999999865543
No 147
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=8.1e-17 Score=140.66 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=77.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
......++|||+|||+++||++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++|++ +|+..|.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34556899999999999999999999999999 89999999987 9999999999999999999999 9999999999
Q ss_pred eEeecccCC
Q 006282 101 IRIMYSHRD 109 (652)
Q Consensus 101 i~i~~s~~~ 109 (652)
|+|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999987643
No 148
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=140.13 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=81.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCe-eEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I-~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||+++++++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456789999999999999999999999999 899999999999999999999999999999996 999999999999999
Q ss_pred ccHHHHHHH
Q 006282 388 QRKEERRAR 396 (652)
Q Consensus 388 ~~~~~r~~~ 396 (652)
..++.+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988777544
No 149
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.5e-17 Score=137.79 Aligned_cols=85 Identities=62% Similarity=1.028 Sum_probs=79.6
Q ss_pred ccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 306 ~~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
......++|||+|||.++++++|+++|+.||.|.+|+|+.+ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34457889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccHH
Q 006282 386 VAQRKE 391 (652)
Q Consensus 386 ~~~~~~ 391 (652)
|+.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998653
No 150
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=138.76 Aligned_cols=88 Identities=28% Similarity=0.455 Sum_probs=79.2
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 20 ~~~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
+.........++|||+|||.++|+++|+++|+.||+|.+|++++|. ++++|||||+|.+.++|++|++.||+..|+|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345556678999999999999999999999999999999999985 35889999999999999999999999999999
Q ss_pred eeEeecccCC
Q 006282 100 SIRIMYSHRD 109 (652)
Q Consensus 100 ~i~i~~s~~~ 109 (652)
.|+|.|+...
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=137.27 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=79.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEE-eeCCCCCcccEEEEEeCCHHHHHHHHhhcC--CcccCCcee
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVC-RDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKSI 101 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~-~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln--~~~i~G~~i 101 (652)
+.+.++|||+|||+++|+++|+++|+.||. |.+|++. +|+.+++++|||||+|.+.++|++|++.|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999999 888899999999999999999999999996 589999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 152
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=137.99 Aligned_cols=82 Identities=30% Similarity=0.552 Sum_probs=77.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|++|+|+.+.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=133.75 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=72.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc--ccCCceeE
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSIR 102 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~--~i~G~~i~ 102 (652)
...++++|||+|||+++||++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++. .|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999764 589999999999999999988754 48999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999987543
No 154
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=133.68 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=76.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46789999999999999999999999999999999885 68999999999999999999999999999999999999997
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 155
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=145.15 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=79.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcC--CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG--~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.|. +|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357899999999999999999999999 99999999884 899999999999999999999999999999999999999
Q ss_pred cccHHHHHH
Q 006282 387 AQRKEERRA 395 (652)
Q Consensus 387 ~~~~~~r~~ 395 (652)
+.++..+..
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 998765544
No 156
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-17 Score=139.66 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=77.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|++|+|+.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34678999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 157
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=9.8e-17 Score=137.20 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=78.7
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC---eeEEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---KPLYVA 385 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g---~~l~v~ 385 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999899999999999999999999999999999998 999999
Q ss_pred ecccHH
Q 006282 386 VAQRKE 391 (652)
Q Consensus 386 ~~~~~~ 391 (652)
|+..+.
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998654
No 158
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.1e-16 Score=139.39 Aligned_cols=83 Identities=36% Similarity=0.549 Sum_probs=78.2
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.||+..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999886 789999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+.++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9865
No 159
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=132.80 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=76.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4456889999999999999999999999999999999885 588999999999999999999999999999999999999
Q ss_pred ccc
Q 006282 387 AQR 389 (652)
Q Consensus 387 ~~~ 389 (652)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=2.3e-17 Score=147.75 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=78.7
Q ss_pred eEEEeeCCHHHHHHHHHHHCCCccCCceEEEEccccchHHHHHHhHHHHHhhhhcccccccceeeecCCCCCCCHHHHHH
Q 006282 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330 (652)
Q Consensus 251 ~~fV~f~~~~~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~L~~ 330 (652)
+.|++|++...+..|+..+++....++.-. .+.. ........++|||+|||.++++++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~------------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGR------------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCC------------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCC------------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 568888888888899988887665544211 1111 111233467899999999999999999
Q ss_pred HhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 331 LFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 331 ~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
+|+.||.|++|+|+.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.|++.+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999875 7899999999999999999999999999999999999999854
No 161
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=140.55 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=75.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
...++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34568899999999999999865 7999999999988754 5789999999999999999999999999999999
Q ss_pred eEeecccCCcc
Q 006282 101 IRIMYSHRDPS 111 (652)
Q Consensus 101 i~i~~s~~~~~ 111 (652)
|+|.|+.....
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987654
No 162
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=140.36 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred cCC
Q 006282 107 HRD 109 (652)
Q Consensus 107 ~~~ 109 (652)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 163
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.6e-17 Score=134.83 Aligned_cols=82 Identities=35% Similarity=0.640 Sum_probs=77.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEE-EEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v-~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
.+++|||+|||.++++++|+++|+.||.|.++ +|+.+ .+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999 99988 58999999999999999999999999999999999999999
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
.++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8653
No 164
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=132.10 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.9
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3456789999999999999999999999999999999886 588999999999999999999999999999999999999
Q ss_pred cc
Q 006282 387 AQ 388 (652)
Q Consensus 387 ~~ 388 (652)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 165
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.6e-17 Score=139.39 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V-~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
.....+.++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +++++|||||+|.+.++|++|++. |+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3455678999999999999999999999999999 899999998 899999999999999999999996 9999999999
Q ss_pred EeecccCC
Q 006282 102 RIMYSHRD 109 (652)
Q Consensus 102 ~i~~s~~~ 109 (652)
+|.|+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998754
No 166
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=134.01 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=76.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 445789999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 865
No 167
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=135.96 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=78.7
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
+....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999885 78999999999999999999999999999999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
|+.++
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99865
No 168
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=132.73 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred cccceeeecCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~----~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
..+++|||+|||+++++++|+ ++|++||.|.+|+|+.+..+ +|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999999999999999 99999999999999988766 899999999999999999999999999999999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.+++.+
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998754
No 169
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2e-16 Score=135.81 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=77.5
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 006282 388 Q 388 (652)
Q Consensus 388 ~ 388 (652)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 170
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=7.3e-17 Score=144.42 Aligned_cols=87 Identities=25% Similarity=0.401 Sum_probs=81.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
......++|||+|||+++|+++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+....
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998654
No 171
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2e-16 Score=137.68 Aligned_cols=83 Identities=30% Similarity=0.550 Sum_probs=78.3
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999885 889999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9865
No 172
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.2e-17 Score=136.02 Aligned_cols=80 Identities=29% Similarity=0.567 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccCC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~~ 109 (652)
++|||+|||.++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.+ |.+|++.||+..+.|+.|+|.|+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998865
Q ss_pred c
Q 006282 110 P 110 (652)
Q Consensus 110 ~ 110 (652)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 173
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.8e-16 Score=144.69 Aligned_cols=87 Identities=30% Similarity=0.476 Sum_probs=81.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|||+++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|+....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997644
No 174
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=1.2e-16 Score=137.95 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=78.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...+++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567889999999999999999999999999999999884 789999999999999999999999999999999999999
Q ss_pred cccHH
Q 006282 387 AQRKE 391 (652)
Q Consensus 387 ~~~~~ 391 (652)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98653
No 175
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2e-16 Score=139.70 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=78.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeeccc
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~ 107 (652)
..++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 699999999999999987
Q ss_pred CCc
Q 006282 108 RDP 110 (652)
Q Consensus 108 ~~~ 110 (652)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 176
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=137.56 Aligned_cols=85 Identities=21% Similarity=0.411 Sum_probs=79.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++. |+..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3469999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCccc
Q 006282 107 HRDPSI 112 (652)
Q Consensus 107 ~~~~~~ 112 (652)
......
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876543
No 177
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=133.42 Aligned_cols=86 Identities=22% Similarity=0.378 Sum_probs=77.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......+.++|||+|||+++|+++|+++|+.||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34455678999999999999999999999999977 67777 678999999999999999999999999999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+.....
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 178
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=135.98 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=78.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4457899999999999999999999999999999999886 789999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9865
No 179
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=135.64 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=74.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC--cccCCcee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~--~~i~G~~i 101 (652)
....++++|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999976 48999999999999999998874 57999999
Q ss_pred EeecccCCccc
Q 006282 102 RIMYSHRDPSI 112 (652)
Q Consensus 102 ~i~~s~~~~~~ 112 (652)
+|.|++.....
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 180
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=131.47 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC--CcccCCceeE
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKSIR 102 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln--~~~i~G~~i~ 102 (652)
...++++|||+|||+++||++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.++ +..|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456899999999999999999999999999999999875 5899999999999999999774 5679999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987644
No 181
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=133.21 Aligned_cols=83 Identities=31% Similarity=0.478 Sum_probs=76.7
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345689999999999999999999999999999999998544 7999999999999999999999999999999999999
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8653
No 182
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.4e-16 Score=141.96 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
......++|||+|||+++||++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++|++ +|+..|.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34566899999999999999999999999999 89999999987 9999999999999999999999 9999999999
Q ss_pred eEeecccC
Q 006282 101 IRIMYSHR 108 (652)
Q Consensus 101 i~i~~s~~ 108 (652)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998764
No 183
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=128.44 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++|+++|+++|+.||+|.+|+++ +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34568999999999999999999999999999999997 3799999999999999999999999999999999
Q ss_pred cccCCccc
Q 006282 105 YSHRDPSI 112 (652)
Q Consensus 105 ~s~~~~~~ 112 (652)
|+...+..
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 184
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=133.21 Aligned_cols=82 Identities=21% Similarity=0.420 Sum_probs=76.7
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++ ||+..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999885 68899999999999999999999 999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+.++
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 185
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=138.17 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=79.3
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~---I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345678999999999999999999999999 899999999889999999999999999999999 9999999999999
Q ss_pred EecccHHHH
Q 006282 385 AVAQRKEER 393 (652)
Q Consensus 385 ~~~~~~~~r 393 (652)
.++..++..
T Consensus 93 ~~a~~~~~~ 101 (118)
T 2db1_A 93 FKSHRTEMD 101 (118)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999877654
No 186
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=135.13 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=77.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|++|+|+.+ .+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35678999999999999999999999999999999988 47899999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 187
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=133.72 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=76.0
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeE--------EEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~--------v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
....++|||+|||.++++++|+++|+.||.|.+ ++++.+ .+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999999999 999988 47899999999999999999999999999999
Q ss_pred CeeEEEEecc
Q 006282 379 SKPLYVAVAQ 388 (652)
Q Consensus 379 g~~l~v~~~~ 388 (652)
|+.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 188
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=135.28 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=77.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...+++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456889999999999999999999999999999999885 589999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9865
No 189
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=135.97 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=79.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHhhcCCcccCC
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLY---DLFSQVGQVLSVRVCRDLSTR---RSLGYGYVNYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~---~~Fs~~G~V~~i~v~~d~~t~---~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G 98 (652)
.....++|||+|||+++++++|+ ++|++||+|.+|+|.+|..++ +++|||||+|.+.++|++|++.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999998754 566999999999999999999999999999
Q ss_pred ceeEeecccCCcc
Q 006282 99 KSIRIMYSHRDPS 111 (652)
Q Consensus 99 ~~i~i~~s~~~~~ 111 (652)
++|+|.|+...+.
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987653
No 190
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=136.71 Aligned_cols=83 Identities=36% Similarity=0.561 Sum_probs=78.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhh-cCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcE-ecCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-IVSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~-fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~-~~g~~l~v~ 385 (652)
....++|||+|||.++++++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. ++|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345789999999999999999999999 999999999999899999999999999999999999999999 999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98765
No 191
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=136.37 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=77.0
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
.....++|||+|||.++++++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9864
No 192
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=135.50 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=78.1
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC--CCCCccEEEEEeCCHHHHHHHHHHh-cCcEecCeeEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 384 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~--~g~s~g~afV~F~s~~~A~~A~~~l-ng~~~~g~~l~v 384 (652)
....++|||+|||.++++++|+++|+.||.|++|+|+.+. +|.++|||||+|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4467899999999999999999999999999999999884 8899999999999999999999999 999999999999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.|+..+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999865
No 193
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=135.53 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=73.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
.....+|||+|||+++||++|+++|+.| .|.+|+|++|+. ++++|||||+|.+.++|++|+ .+|+..|.|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 4456899999999999999999999999 899999999976 899999999999999999999 5999999999999987
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 194
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=133.62 Aligned_cols=81 Identities=19% Similarity=0.402 Sum_probs=75.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.++|||+|||+++++++|+++|+.| .|.+|+|+.|.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 899999999988999999999999999999999 69999999999999999876
Q ss_pred HHH
Q 006282 391 EER 393 (652)
Q Consensus 391 ~~r 393 (652)
+..
T Consensus 94 ~~~ 96 (109)
T 2dnn_A 94 QWV 96 (109)
T ss_dssp HHH
T ss_pred chh
Confidence 543
No 195
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=125.51 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCCccEEEEcCCCCCCCHHH----HHHHHhcc-CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQ----LYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~----L~~~Fs~~-G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
.++..++|||+|||.++++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+|++.||+..|.||
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 333445599999999999998 66899999 599998 33 9999999999999999999999999999
Q ss_pred eeEeecccCCcccc
Q 006282 100 SIRIMYSHRDPSIR 113 (652)
Q Consensus 100 ~i~i~~s~~~~~~~ 113 (652)
+|+|.|++..++..
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999999876643
No 196
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=134.92 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=70.9
Q ss_pred cccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc--EecCeeEEEE
Q 006282 309 FQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 385 (652)
Q Consensus 309 ~~~~~l~V~nlp~-~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~--~~~g~~l~v~ 385 (652)
.++++|||+|||+ ++++++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.||+. .|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 9999999999999999999999876 689999999999999999999864 5999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
+++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99854
No 197
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=135.79 Aligned_cols=87 Identities=26% Similarity=0.485 Sum_probs=80.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34689999999999999999999999999999999884 78899999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 006282 389 RKEERRAR 396 (652)
Q Consensus 389 ~~~~r~~~ 396 (652)
.+..+...
T Consensus 87 ~~~~~~~~ 94 (104)
T 1p1t_A 87 SEKNKEEL 94 (104)
T ss_dssp CTTHHHHH
T ss_pred Cccchhhh
Confidence 88766543
No 198
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=133.50 Aligned_cols=81 Identities=37% Similarity=0.667 Sum_probs=75.4
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC--C--CCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--G--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~--g--~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+.. | .++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999998753 3 889999999999999999999999999999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
++..+
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 99765
No 199
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=133.27 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=76.0
Q ss_pred CCCCccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC
Q 006282 25 NQFLTTSLYVGDLDFNV------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~v------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G 98 (652)
....+++|||+|||+++ |+++|+++|+.||+|.+|++.+ .+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 7899999999999999999983 678999999999999999999999999999999
Q ss_pred c-eeEeecccCC
Q 006282 99 K-SIRIMYSHRD 109 (652)
Q Consensus 99 ~-~i~i~~s~~~ 109 (652)
+ +|+|.|+...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 9 9999998753
No 200
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.3e-16 Score=129.50 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=74.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
.++|||+|||.++++++|+++|+.||.|.+++++.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999999885 8899999999999999999999 8999999999999999875
Q ss_pred H
Q 006282 390 K 390 (652)
Q Consensus 390 ~ 390 (652)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 201
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-16 Score=132.10 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=74.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC-----c
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----K 99 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G-----~ 99 (652)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++| |||||+|.+.++|++|++.||+..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456899999999999999999999999999999999887 799999999999999999999999999 9
Q ss_pred eeEeecccCCcc
Q 006282 100 SIRIMYSHRDPS 111 (652)
Q Consensus 100 ~i~i~~s~~~~~ 111 (652)
.|+|.|+...+.
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999887543
No 202
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.5e-16 Score=136.38 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
.+...++|||+|||+++|+++|+++|+.|| .|..++|.. ++++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998853 357899999999999999999999999999999999
Q ss_pred ecccCCccc
Q 006282 104 MYSHRDPSI 112 (652)
Q Consensus 104 ~~s~~~~~~ 112 (652)
.++...+..
T Consensus 100 ~~a~~~p~~ 108 (111)
T 2jvr_A 100 ERDDNPPPI 108 (111)
T ss_dssp EESCC----
T ss_pred EECCCCCCC
Confidence 998866543
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.6e-16 Score=141.60 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=78.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~---I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
...++|||+|||+++|+++|+++|+.||. |.+|+|++|..|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred ecccHHHH
Q 006282 386 VAQRKEER 393 (652)
Q Consensus 386 ~~~~~~~r 393 (652)
++..++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99877654
No 204
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=131.70 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh--cCcEecCeeEEE
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM--NGKMIVSKPLYV 384 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l--ng~~~~g~~l~v 384 (652)
...++++|||+|||+++++++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.| ++..+.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999999875 899999999999999999987 467899999999
Q ss_pred EecccHH
Q 006282 385 AVAQRKE 391 (652)
Q Consensus 385 ~~~~~~~ 391 (652)
.|++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998653
No 205
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.2e-16 Score=138.16 Aligned_cols=81 Identities=36% Similarity=0.548 Sum_probs=75.7
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4457899999999999999999999999999999999884 689999999999999999999999999999999999999
Q ss_pred cc
Q 006282 387 AQ 388 (652)
Q Consensus 387 ~~ 388 (652)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 206
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=134.18 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=77.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
.++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 865
No 207
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=2.4e-16 Score=131.26 Aligned_cols=81 Identities=28% Similarity=0.453 Sum_probs=76.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+++|+.+ +|+++|||||+|.+.++|.+|+..|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45679999999999999999999999999999999985 78899999999999999999999999999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 208
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=135.95 Aligned_cols=83 Identities=23% Similarity=0.475 Sum_probs=77.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35689999999999999999999999999999999886 4899999999999999999999 899999999999999998
Q ss_pred cHHHH
Q 006282 389 RKEER 393 (652)
Q Consensus 389 ~~~~r 393 (652)
.+..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 77655
No 209
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.6e-16 Score=155.38 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=79.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcC--CeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG--~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
..++|||+||++++|+++|+++|+.|| .|++|+|++|. +|+++|||||+|.+.++|.+||+.||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999985 899999999999999999999999999999999999999
Q ss_pred cccHHHHHH
Q 006282 387 AQRKEERRA 395 (652)
Q Consensus 387 ~~~~~~r~~ 395 (652)
+.+......
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 998765543
No 210
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=128.09 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc-ee
Q 006282 29 TTSLYVGDLDFNV------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK-SI 101 (652)
Q Consensus 29 ~~sL~V~nLp~~v------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~-~i 101 (652)
+++|||+|||.++ |+++|+++|++||+|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999883 5789999999999999999999999999999999 88
Q ss_pred Ee
Q 006282 102 RI 103 (652)
Q Consensus 102 ~i 103 (652)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 77
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=132.95 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=76.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc--------
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-------- 96 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i-------- 96 (652)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCceeEeecccC
Q 006282 97 NNKSIRIMYSHR 108 (652)
Q Consensus 97 ~G~~i~i~~s~~ 108 (652)
.+++|+|.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 577788888763
No 212
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=131.59 Aligned_cols=87 Identities=18% Similarity=0.329 Sum_probs=78.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....++++|||+|||+++|+++|+++|+.|+ +|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999773 788999999999999999999999999999999999999999999
Q ss_pred eecccCCccc
Q 006282 103 IMYSHRDPSI 112 (652)
Q Consensus 103 i~~s~~~~~~ 112 (652)
|.|++.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876543
No 213
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=4.4e-16 Score=137.44 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=77.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..+++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45689999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 214
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=129.50 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC--Ccee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN--NKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~--G~~i 101 (652)
....++++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34567899999999999999999999999999999999764 579999999999999999999999999 9999
Q ss_pred EeecccCCc
Q 006282 102 RIMYSHRDP 110 (652)
Q Consensus 102 ~i~~s~~~~ 110 (652)
+|.|++..+
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 215
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=135.34 Aligned_cols=83 Identities=34% Similarity=0.598 Sum_probs=77.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||..+++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 216
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=139.39 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=78.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
......++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ +|+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567999999999999999999999999999997777888899999999999999999999999 9999999999999
Q ss_pred ecccCC
Q 006282 104 MYSHRD 109 (652)
Q Consensus 104 ~~s~~~ 109 (652)
.|+...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987653
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=135.97 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=77.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCee--------EEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--------SCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~--------~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
....++|||+|||.++++++|+++|+.||.|. .|+|+.+ .+|+++|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999999 6999988 57999999999999999999999999999999
Q ss_pred CeeEEEEecccH
Q 006282 379 SKPLYVAVAQRK 390 (652)
Q Consensus 379 g~~l~v~~~~~~ 390 (652)
|+.|.|.++..+
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999999865
No 218
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=4.9e-16 Score=144.40 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=80.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...++++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcc
Q 006282 105 YSHRDPS 111 (652)
Q Consensus 105 ~s~~~~~ 111 (652)
|+...+.
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 219
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=135.60 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=72.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--cEecCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng--~~~~g~~l~v~ 385 (652)
..++++|||+|||+++++++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 446788999999999999999999999999999999986 89999999999999999999874 68999999999
Q ss_pred ecccHH
Q 006282 386 VAQRKE 391 (652)
Q Consensus 386 ~~~~~~ 391 (652)
|++.++
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 998653
No 220
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=134.44 Aligned_cols=83 Identities=30% Similarity=0.506 Sum_probs=77.7
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhc------CcEecCe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN------GKMIVSK 380 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~ln------g~~~~g~ 380 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457889999999999999999999999999999999885 68899999999999999999999999 9999999
Q ss_pred eEEEEecccH
Q 006282 381 PLYVAVAQRK 390 (652)
Q Consensus 381 ~l~v~~~~~~ 390 (652)
.|.|.|+.++
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999999865
No 221
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.2e-16 Score=127.54 Aligned_cols=75 Identities=15% Similarity=0.385 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
+|||+|||+++|+++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++. ++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999994 888999999999874
No 222
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3e-16 Score=139.15 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=77.9
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9865
No 223
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=134.47 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=77.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999886 5889999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 854
No 224
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=129.14 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 9999999999899999999999999999999999 99999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-16 Score=128.13 Aligned_cols=81 Identities=30% Similarity=0.462 Sum_probs=74.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.......++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344567899999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|++....
T Consensus 75 v~~a~~~~~ 83 (90)
T 2dnp_A 75 VELSTKGQK 83 (90)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 226
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=132.87 Aligned_cols=82 Identities=27% Similarity=0.449 Sum_probs=76.2
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC--CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~--g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+.. |+++|||||+|.+.++|.+|+ .||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 44568999999999999999999999999 99999998864 899999999999999999999 899999999999999
Q ss_pred ecccHH
Q 006282 386 VAQRKE 391 (652)
Q Consensus 386 ~~~~~~ 391 (652)
++..+.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998653
No 227
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=132.14 Aligned_cols=82 Identities=24% Similarity=0.429 Sum_probs=76.7
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCee-EEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee----E
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP----L 382 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~-~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~----l 382 (652)
...++|||+|||.++++++|+++|+.||.|. +|+|+++. +|+++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 99999885 7899999999999999999999999999999999 9
Q ss_pred EEEecccH
Q 006282 383 YVAVAQRK 390 (652)
Q Consensus 383 ~v~~~~~~ 390 (652)
.|.|+...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998743
No 228
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=126.04 Aligned_cols=78 Identities=23% Similarity=0.415 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc-CCcccCCceeE
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIR 102 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l-n~~~i~G~~i~ 102 (652)
......++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.| |+..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456899999999999999999999999999999999874 589999999999999999999 99999999999
Q ss_pred eeccc
Q 006282 103 IMYSH 107 (652)
Q Consensus 103 i~~s~ 107 (652)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 229
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=135.98 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
.......++|||+|||+++|+++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++|++ +|+..+.|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 344567899999999999999999999999988 99999999988 9999999999999999999999 999999999
Q ss_pred eeEeecccC
Q 006282 100 SIRIMYSHR 108 (652)
Q Consensus 100 ~i~i~~s~~ 108 (652)
.|+|.++..
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 999998764
No 230
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=131.02 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=74.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC--CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~--g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
..++|||+|||.++++++|+++|+.||.|.+++++.+.. ++++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999988763 338999999999999999999999999999999999998
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 231
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.4e-16 Score=132.66 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....++|||+|||.++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 446789999999999999999999999999999999886 58999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 006282 106 SHRDPSIRK 114 (652)
Q Consensus 106 s~~~~~~~~ 114 (652)
+...+....
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 988765543
No 232
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=7.1e-16 Score=126.92 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=73.1
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999885 69999999999999999999996 688899999999987
Q ss_pred c
Q 006282 387 A 387 (652)
Q Consensus 387 ~ 387 (652)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 233
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.2e-16 Score=129.57 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=75.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....+.++|||+|||+++|+++|+++|+.||+|.+|++.++ +|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34556789999999999999999999999999999999854 589999999999999999999999999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987654
No 234
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=135.68 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=77.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
.....++|||+|||+++|+++|+++|+.||.|.+ ++++|..+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 778888889999999999999999999999 99999999999999
Q ss_pred cccCCc
Q 006282 105 YSHRDP 110 (652)
Q Consensus 105 ~s~~~~ 110 (652)
|+....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987654
No 235
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=3.7e-16 Score=133.86 Aligned_cols=83 Identities=28% Similarity=0.586 Sum_probs=77.3
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEe---cCeeEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLY 383 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~---~g~~l~ 383 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456789999999999999999999999999999999886 589999999999999999999999999988 899999
Q ss_pred EEecccH
Q 006282 384 VAVAQRK 390 (652)
Q Consensus 384 v~~~~~~ 390 (652)
|.++..+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999865
No 236
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.2e-16 Score=135.59 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
....+++|||+|||.++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999997 456899999999999999999999999999999999
Q ss_pred cccC
Q 006282 105 YSHR 108 (652)
Q Consensus 105 ~s~~ 108 (652)
|++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9864
No 237
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.4e-16 Score=125.84 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=70.6
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
+|||+|||.++++++|+++|+.||.|.+++++.+. +|+++|||||+|.+.++|.+|++ +||..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999886 78999999999999999999998 9999999999999875
No 238
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=134.31 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=76.0
Q ss_pred ccccceeeecCCCCCCCHHHHH---HHhhhcCCeeEEEEecCCC----CCCccEEEEEeCCHHHHHHHHHHhcCcEecCe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~---~~F~~fG~I~~v~i~~~~~----g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~ 380 (652)
....++|||+|||+++++++|+ ++|++||.|.+|+|+.+.. ++++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999998752 35679999999999999999999999999999
Q ss_pred eEEEEecccH
Q 006282 381 PLYVAVAQRK 390 (652)
Q Consensus 381 ~l~v~~~~~~ 390 (652)
.|.|.|+..+
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999999865
No 239
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=136.93 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=76.4
Q ss_pred ccccceeeecCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~----~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457889999999999999876 6999999999998864 578999999999999999999999999999999999
Q ss_pred EEecccHHHHH
Q 006282 384 VAVAQRKEERR 394 (652)
Q Consensus 384 v~~~~~~~~r~ 394 (652)
|.|+..+....
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99999876554
No 240
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=134.07 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC--CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~--~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999885 7999999999999999999999 899999999999999
Q ss_pred ecccH
Q 006282 386 VAQRK 390 (652)
Q Consensus 386 ~~~~~ 390 (652)
++..+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99864
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-16 Score=137.03 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...++++|||+|||+++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999999999999544443333478999999999999999999999999999999999999
Q ss_pred cccCCcc
Q 006282 105 YSHRDPS 111 (652)
Q Consensus 105 ~s~~~~~ 111 (652)
|+.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987643
No 242
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=133.88 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC--cccCCcee
Q 006282 25 NQFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSI 101 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~--~~i~G~~i 101 (652)
...++++|||+|||++ +||++|+++|++||.|.+|+|.+ ++|||||+|.+.++|++|++.||+ ..|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 99999999999999999999974 458999999999999999998864 46999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|++....
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999986543
No 243
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=5.7e-16 Score=151.55 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
..++|||+||++++||++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006282 106 SHR 108 (652)
Q Consensus 106 s~~ 108 (652)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 244
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=128.05 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=73.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
......+++|||+|||+++|+++|+++|+.||.|. +++..+ +++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34455689999999999999999999999999996 677654 6779999999999999999999999999999999
Q ss_pred eecccCC
Q 006282 103 IMYSHRD 109 (652)
Q Consensus 103 i~~s~~~ 109 (652)
|.|+...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998764
No 245
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=4.8e-16 Score=136.17 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=74.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~--~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
......++|||+|||+++||++|+++|+.| .|. +|+|++|+. ++++|||||+|.+.++|++|++. ++..|.|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 445567899999999999999999999999 677 999999987 99999999999999999999995 6799999999
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
+|.++.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.9e-16 Score=131.87 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=74.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|++|+|..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345678999999999999999999999999999999765 568999999999999999999999999999999999998
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 247
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=7.8e-16 Score=131.07 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=75.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999996 9999999886 6899999999999999999999 8999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9864
No 248
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.3e-16 Score=131.82 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
...++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34568999999999999999999 9999999999999874 4778899999999999999999999999999999
Q ss_pred eEeecccCCcc
Q 006282 101 IRIMYSHRDPS 111 (652)
Q Consensus 101 i~i~~s~~~~~ 111 (652)
|+|.|+..++.
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987643
No 249
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=126.32 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=74.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345667899999999999999999999999999999999753 999999999999999999999999999999
Q ss_pred eecccCCcc
Q 006282 103 IMYSHRDPS 111 (652)
Q Consensus 103 i~~s~~~~~ 111 (652)
|.|+.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999986543
No 250
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=6.3e-16 Score=136.89 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=78.1
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...+++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4457899999999999999999999999999999999885 889999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9865
No 251
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=133.79 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=76.3
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.+|+ .|.|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4467899999999999999999999999999999999885 689999999999999999999999998 89999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8744
No 252
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=9.4e-16 Score=131.55 Aligned_cols=80 Identities=21% Similarity=0.502 Sum_probs=72.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
......+++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999999999999999998 48999999999999999999999999999999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.|+...+
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99988654
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7e-16 Score=133.98 Aligned_cols=82 Identities=33% Similarity=0.631 Sum_probs=76.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe--------cCe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--------VSK 380 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~--------~g~ 380 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456789999999999999999999999999999999998999999999999999999999999999999 578
Q ss_pred eEEEEecccH
Q 006282 381 PLYVAVAQRK 390 (652)
Q Consensus 381 ~l~v~~~~~~ 390 (652)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998753
No 254
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=135.17 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=79.3
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~---I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|+. +|+..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345788999999999999999999999998 999999999889999999999999999999999 9999999999999
Q ss_pred EecccHHHH
Q 006282 385 AVAQRKEER 393 (652)
Q Consensus 385 ~~~~~~~~r 393 (652)
.++.+++..
T Consensus 87 ~~a~~~~~~ 95 (107)
T 2lmi_A 87 YEINNEDVD 95 (107)
T ss_dssp EECCHHHHH
T ss_pred EECCHHHHH
Confidence 999887654
No 255
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.5e-16 Score=131.10 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc--EecCeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~--~~~g~~l~v~~ 386 (652)
.+.++|||+|||+++++++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.|++. .+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45678999999999999999999999999999999875 899999999999999999998765 58999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++.+
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 9865
No 256
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.4e-15 Score=127.89 Aligned_cols=80 Identities=19% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCCCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 22 ASGNQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
......++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334556789999999998 99999999999999999999983 589999999999999999999999999999
Q ss_pred eEeecccCC
Q 006282 101 IRIMYSHRD 109 (652)
Q Consensus 101 i~i~~s~~~ 109 (652)
|+|.|++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 257
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=8.2e-16 Score=131.83 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=71.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||+++++++|+++|+.|| .|..++|..+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457899999999999999999999999 9999998643 479999999999999999999999999999999999997
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 55
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=132.51 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=76.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeE-EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~-v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||+++++++|+++|+.||.|.+ |+|+.+.+|+++|||||+|.+.++|.+|+.. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45678999999999999999999999999998 8898888999999999999999999999997 999999999999988
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7653
No 259
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-16 Score=129.41 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=74.1
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
.+++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|++.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56789999999999999999999999999999999884 78999999999999999999999999999999999887764
No 260
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=136.50 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCe----eEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I----~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356789999999999999999999999875 689999998999999999999999999999995 999999999999
Q ss_pred EecccHHHHHHH
Q 006282 385 AVAQRKEERRAR 396 (652)
Q Consensus 385 ~~~~~~~~r~~~ 396 (652)
..+..++.+...
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999887766543
No 261
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=128.05 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=67.9
Q ss_pred ceeeecCCCCCC------CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe-eEEE
Q 006282 312 LNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYV 384 (652)
Q Consensus 312 ~~l~V~nlp~~~------te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~-~l~v 384 (652)
++|||+|||..+ ++++|+++|++||.|.+++++ ..+|+++|||||+|.+.++|.+|+..|||..++|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 679999999999999999988 46789999999999999999999999999999999 8876
Q ss_pred E
Q 006282 385 A 385 (652)
Q Consensus 385 ~ 385 (652)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=4.9e-16 Score=132.73 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=74.7
Q ss_pred cccceeeecCCCCCC------CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe-e
Q 006282 309 FQGLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-P 381 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~------te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~-~ 381 (652)
...++|||+|||..+ ++++|+++|++||.|.+|+|+ ..+|+++|||||+|.+.++|.+|+..|||..++|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346789999999999 789999999999999999998 56789999999999999999999999999999998 9
Q ss_pred EEEEecccH
Q 006282 382 LYVAVAQRK 390 (652)
Q Consensus 382 l~v~~~~~~ 390 (652)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998743
No 263
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=7.3e-16 Score=138.98 Aligned_cols=83 Identities=34% Similarity=0.512 Sum_probs=77.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|++|+|+.+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9865
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-16 Score=131.41 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=74.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998877765 57889999999999999999999999999999999999998
Q ss_pred cc
Q 006282 388 QR 389 (652)
Q Consensus 388 ~~ 389 (652)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 265
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=141.04 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=76.4
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeE--EEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCc----EecCee
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKP 381 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~--v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~----~~~g~~ 381 (652)
...++|||+|||+++++++|+++|++||.|.. |+|++|. +|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999987 899999999999999 999999999999 999999
Q ss_pred EEEEecccH
Q 006282 382 LYVAVAQRK 390 (652)
Q Consensus 382 l~v~~~~~~ 390 (652)
|.|.++..+
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999864
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=4.5e-16 Score=130.40 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=73.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|++||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.||+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4578999999999999999999999999998887765 478899999999999999999999999999999999999876
Q ss_pred c
Q 006282 389 R 389 (652)
Q Consensus 389 ~ 389 (652)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 267
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-16 Score=132.35 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=73.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||+++++++|+++|+.|| +.+|+|+.|.+|+++|||||+|.+.++|.+|++ +|+..|+++.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4567899999999999999999999999 559999999999999999999999999999995 89999999999999876
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 268
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=130.96 Aligned_cols=82 Identities=33% Similarity=0.539 Sum_probs=73.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+++. +|+++|||||+|.+.++|.+|+..+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999999885 6899999999999999999999976 59999999999999
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-16 Score=131.97 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=76.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999884 789999999999999999999998 99999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8865
No 270
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=133.61 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCe----EEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV----LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V----~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
.....+|||+|||+++||++|+++|+.||+| .+|+|++| .+++++|||||+|.+.++|++|++. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999986 69999999 5899999999999999999999996 9999999999
Q ss_pred Eeeccc
Q 006282 102 RIMYSH 107 (652)
Q Consensus 102 ~i~~s~ 107 (652)
+|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 987654
No 271
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-16 Score=124.79 Aligned_cols=75 Identities=35% Similarity=0.578 Sum_probs=71.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
++|||+|||.++++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999885 68999999999999999999999999 9999999999986
No 272
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=1.4e-16 Score=170.66 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=77.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+||+..+|+++|+++|+.||.|+.|+|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999884 8899999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 854
No 273
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-16 Score=133.27 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=70.6
Q ss_pred ccccceeeecCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--cEecCeeEEE
Q 006282 308 KFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYV 384 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~-~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng--~~~~g~~l~v 384 (652)
..++++|||+|||++ +++++|+++|++||.|++|+|++ +||||||+|.+.++|.+|++.||+ ..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 99999999999999999999975 489999999999999999998864 5699999999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.|++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999765
No 274
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=129.46 Aligned_cols=80 Identities=29% Similarity=0.419 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.| +++.+.+|+++|||||+|.+.++|.+|+..||+..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457899999999999999999999999977 6777778999999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 275
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=142.76 Aligned_cols=84 Identities=29% Similarity=0.440 Sum_probs=79.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...++++|||+|||+++|+++|+++|+.||+|.+|+|+.|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccCC
Q 006282 105 YSHRD 109 (652)
Q Consensus 105 ~s~~~ 109 (652)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98764
No 276
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.6e-15 Score=131.91 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=75.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..+++|||+|||.++++++|+++|+.||.|.+|+++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35678999999999999999999999999999999976 5679999999999999999999999999999999999998
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
.+.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 277
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.6e-17 Score=141.97 Aligned_cols=87 Identities=22% Similarity=0.382 Sum_probs=81.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--------VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~--------i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
..++++|||+|||+++|+++|+++|+.||.|.+ |+|++|+.+++++|||||+|.+.++|++|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CceeEeecccCCccc
Q 006282 98 NKSIRIMYSHRDPSI 112 (652)
Q Consensus 98 G~~i~i~~s~~~~~~ 112 (652)
|++|+|.|+...+..
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876544
No 278
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-15 Score=128.70 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.++++.. ++|||||+|.+.++|.+|+..|||..++|+.|.|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3468999999999999999999999999999999983 58999999999999999999999999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 279
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=7.9e-16 Score=130.77 Aligned_cols=81 Identities=22% Similarity=0.524 Sum_probs=75.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
...+++|||+|||+++|+++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..++|+.|+|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999 88899999999998
Q ss_pred ccCC
Q 006282 106 SHRD 109 (652)
Q Consensus 106 s~~~ 109 (652)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8754
No 280
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3e-16 Score=130.07 Aligned_cols=79 Identities=33% Similarity=0.528 Sum_probs=72.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
++|||+|||.++++++|+++|+.||.|.+++++.+. +|+++|||||+|.+.+ |.+|+..|||..++|+.|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999886 5899999999999999 99999999999999999999999865
Q ss_pred H
Q 006282 391 E 391 (652)
Q Consensus 391 ~ 391 (652)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 281
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=4.3e-15 Score=134.95 Aligned_cols=82 Identities=26% Similarity=0.293 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC--ceeE
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIR 102 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G--~~i~ 102 (652)
++....+|||+||++++||++|+++|++||.|.+|+|..+ +++|||||+|.+.++|++|++.||+..|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3444577999999999999999999999999999999754 356899999999999999999999999965 9999
Q ss_pred eecccCCc
Q 006282 103 IMYSHRDP 110 (652)
Q Consensus 103 i~~s~~~~ 110 (652)
|.|++...
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998653
No 282
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=2.9e-15 Score=127.47 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 344679999999999999999999999999999999874 499999999999999999999999999999999
Q ss_pred cccCCcc
Q 006282 105 YSHRDPS 111 (652)
Q Consensus 105 ~s~~~~~ 111 (652)
|+.....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9986544
No 283
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.8e-16 Score=139.57 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=74.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
.....++|||+|||+++||++|+++|+.|| |.+|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 66999999976 999999999999999999999 689999999999999
Q ss_pred cccCCc
Q 006282 105 YSHRDP 110 (652)
Q Consensus 105 ~s~~~~ 110 (652)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887654
No 284
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-15 Score=127.33 Aligned_cols=79 Identities=20% Similarity=0.454 Sum_probs=71.0
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
...++++|||+|||+ ++|+++|+++|+.||+|.+|++. +|||||+|.+.++|++|++.||+..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345689999999998 99999999999999999999984 489999999999999999999999999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876543
No 285
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=122.98 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=71.2
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-cCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l-ng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|+..| ||..++|+.|.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345678999999999999999999999999999999975 889999999999999999999 99999999999999
Q ss_pred cc
Q 006282 387 AQ 388 (652)
Q Consensus 387 ~~ 388 (652)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 286
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=131.83 Aligned_cols=80 Identities=34% Similarity=0.510 Sum_probs=75.3
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 35789999999999999999999999999999999885 689999999999999999999997 9999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=1.6e-15 Score=133.80 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=74.0
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
.++|||+|||.++++++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 468999999999999999999999999999999988 48899999999999999999999 7999999999999999874
No 288
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=3.2e-15 Score=128.89 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
+...+++|||+|||++ +|+++|+++|+.||+|.+|++ ++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4445689999999999 999999999999999999998 4589999999999999999999999999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99985443
No 289
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=128.51 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=71.4
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC-----eeEEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-----KPLYV 384 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g-----~~l~v 384 (652)
..++|||+|||+++++++|+++|+.||.|++|+|+.+ |||||+|.+.++|.+|++.|||..|.| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4678999999999999999999999999999999987 799999999999999999999999999 99999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.++.++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999864
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=9.5e-16 Score=128.97 Aligned_cols=83 Identities=33% Similarity=0.503 Sum_probs=76.2
Q ss_pred cccceeeecCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~----~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
..+++|||+|||.++++++|+ ++|+.||.|.+|+++. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356799999999999999999 9999999999999885 4678999999999999999999999999999999999
Q ss_pred EecccHHHH
Q 006282 385 AVAQRKEER 393 (652)
Q Consensus 385 ~~~~~~~~r 393 (652)
.|+..+...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999876544
No 291
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=130.72 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=74.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCC-eeEEEEe-cCC-CCCCccEEEEEeCCHHHHHHHHHHhc--CcEecCeeEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVM-RDP-SGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLY 383 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~-I~~v~i~-~~~-~g~s~g~afV~F~s~~~A~~A~~~ln--g~~~~g~~l~ 383 (652)
...++|||+|||.++++++|+++|+.||. |.+|+++ .+. +|.++|||||+|.+.++|.+|+..|| +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 554 57899999999999999999999996 5899999999
Q ss_pred EEecccH
Q 006282 384 VAVAQRK 390 (652)
Q Consensus 384 v~~~~~~ 390 (652)
|.|+.++
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999865
No 292
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=131.87 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||+++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999998864 5589999999999999999999999999999999998
Q ss_pred cCC
Q 006282 107 HRD 109 (652)
Q Consensus 107 ~~~ 109 (652)
..+
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 293
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.1e-15 Score=129.39 Aligned_cols=79 Identities=25% Similarity=0.567 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 307 ~~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
.....++|||+|||.++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred cccHHH
Q 006282 387 AQRKEE 392 (652)
Q Consensus 387 ~~~~~~ 392 (652)
++.+..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987643
No 294
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=126.90 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=74.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999885 69999999999999999999998 57899999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9865
No 295
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=128.79 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999987 889999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 296
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=3e-15 Score=137.76 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=77.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|++|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 297
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=126.30 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec--CeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~--g~~l~v~~ 386 (652)
...++|||+|||.++++++|+++|++||.|++|++..+ +|||||+|.+.++|.+|++.|||..+. |+.|.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35678999999999999999999999999999999865 789999999999999999999999999 99999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 298
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=134.39 Aligned_cols=85 Identities=19% Similarity=0.362 Sum_probs=77.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEE-EEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v-~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||+++++++|+++|+.||.|.++ .+..+.+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999984 55566789999999999999999999999 9999999999999999
Q ss_pred ccHHHHH
Q 006282 388 QRKEERR 394 (652)
Q Consensus 388 ~~~~~r~ 394 (652)
..++...
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887544
No 299
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=123.96 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=70.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456789999999999999999999999999999997 5799999999999999999999999999999999988
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 300
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=125.89 Aligned_cols=79 Identities=27% Similarity=0.380 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC-cccCCceeEe
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF-TPLNNKSIRI 103 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~-~~i~G~~i~i 103 (652)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6666553 468999999999999999999999 9999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99986543
No 301
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.4e-15 Score=123.31 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQV--GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~--G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
....++++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344568999999999999999999999999 999998875 3699999999999999999999999999999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987543
No 302
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=128.92 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=70.1
Q ss_pred ccccceeee--cCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe-----cCe
Q 006282 308 KFQGLNLYI--KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-----VSK 380 (652)
Q Consensus 308 ~~~~~~l~V--~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~-----~g~ 380 (652)
..+.++||| +||++++++++|+++|++||.|++|.|+.+ ||||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 669999999999999999999999988753 78999999999999999999999998 689
Q ss_pred eEEEEecccH
Q 006282 381 PLYVAVAQRK 390 (652)
Q Consensus 381 ~l~v~~~~~~ 390 (652)
+|+|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998743
No 303
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=134.71 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=74.2
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
...++|||+|||.++++++|+++|+.||.|++++|+.+ .+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999988 47899999999999999999999999999999999999985
No 304
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=6e-16 Score=165.69 Aligned_cols=151 Identities=17% Similarity=0.341 Sum_probs=112.5
Q ss_pred HHHHHhccCCeEEEEEEee----C-CCCCcccEE--EEEeCCHHHHHHHHhhcCCcccCCc---------------eeEe
Q 006282 46 LYDLFSQVGQVLSVRVCRD----L-STRRSLGYG--YVNYANPADAARALDVLNFTPLNNK---------------SIRI 103 (652)
Q Consensus 46 L~~~Fs~~G~V~~i~v~~d----~-~t~~s~g~A--fV~F~~~e~A~~Al~~ln~~~i~G~---------------~i~i 103 (652)
|.++|.++|+|..|..+.. + .+....|++ |+.|.+..++..++..++.....++ .+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999998844432 2 222233444 8888877665554443332222111 1222
Q ss_pred ecccCCcccccCCCcceeecCCCccccHHHHHhhhccCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHHhcCce
Q 006282 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (652)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 182 (652)
.....++........+|||+||+.++++++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||+.||+..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 2222333334455678999999999999999999999999999999998 588999999999999999999999999999
Q ss_pred ecCeeeeecccccc
Q 006282 183 INDKQVFVGHFLRK 196 (652)
Q Consensus 183 l~g~~~~v~~~~~~ 196 (652)
|.|+.|.|.+....
T Consensus 169 i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 169 IDGRRVLVDVERGR 182 (437)
T ss_pred ECCEEEEEEEeCCC
Confidence 99999999987654
No 305
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=128.52 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.8
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 7899999999999999999999999999999999999865
No 306
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=127.05 Aligned_cols=77 Identities=29% Similarity=0.439 Sum_probs=72.4
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|||..++|+.|.|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45678999999999999999999999999999999865 8899999999999999999999999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 307
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=5.7e-15 Score=124.04 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=70.9
Q ss_pred ccccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~-~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...+++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999998 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=126.51 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=73.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44568999999999999999999999999987665 3468899999999999999999999999999999999999
Q ss_pred cccCCc
Q 006282 105 YSHRDP 110 (652)
Q Consensus 105 ~s~~~~ 110 (652)
|+....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987653
No 309
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=128.46 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=71.8
Q ss_pred ccEEEEcCC----CCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCC----HHH----HHHHHh--hcCCc
Q 006282 29 TTSLYVGDL----DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN----PAD----AARALD--VLNFT 94 (652)
Q Consensus 29 ~~sL~V~nL----p~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~----~e~----A~~Al~--~ln~~ 94 (652)
.+.|||+|| |++++|++|+++|+.||+|.++++..|+.|++|+|||||.|.+ +++ |.+|+. .+|+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 9999999999999999999999999999999999999999996 434 899988 78999
Q ss_pred ccCCceeEeeccc
Q 006282 95 PLNNKSIRIMYSH 107 (652)
Q Consensus 95 ~i~G~~i~i~~s~ 107 (652)
.|.|+.|+|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999998654
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=129.67 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=71.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
..++|||+|||.++++++|+++|++||.|.+|+|+. ++|||||+|.+.++|.+|+..|||..++|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357899999999999999999999999999999875 588999999999999999999999999999999999975
Q ss_pred H
Q 006282 390 K 390 (652)
Q Consensus 390 ~ 390 (652)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=121.66 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeec
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~ 105 (652)
....++|||+|||+++|+++|+++|+.||.|.+| ..|+.+++ ||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 66666665 99999999999999999 999999999999998
Q ss_pred ccCCc
Q 006282 106 SHRDP 110 (652)
Q Consensus 106 s~~~~ 110 (652)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87543
No 312
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-14 Score=121.05 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|| ++|+++|+++|+.||+|.+|++. +++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557899999996 89999999999999999999983 56789999999999999999999999999999999
Q ss_pred ecccCCccc
Q 006282 104 MYSHRDPSI 112 (652)
Q Consensus 104 ~~s~~~~~~ 112 (652)
.|+...+..
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.2e-15 Score=122.51 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
...++|||+|||+++|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999883 67899999999999999999999999999999999999
Q ss_pred cCCc
Q 006282 107 HRDP 110 (652)
Q Consensus 107 ~~~~ 110 (652)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 314
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=1.7e-15 Score=132.71 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=75.0
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCee--EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~--~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...++|||+|||+++|+++|+++|+.| .|+ +|+|+.|.+|+++|||||+|.+.++|.+|++ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 677 9999999889999999999999999999998 578999999999999
Q ss_pred cccHHH
Q 006282 387 AQRKEE 392 (652)
Q Consensus 387 ~~~~~~ 392 (652)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 987654
No 315
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.4e-15 Score=122.16 Aligned_cols=76 Identities=20% Similarity=0.448 Sum_probs=70.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345689999999999999999999999999999999854 9999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=121.85 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=70.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|||.++++++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 345678999999999999999999999999999999854 9999999999999999999999999999999999
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
.++
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.6e-15 Score=121.00 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=69.5
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
+|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999998885 68999999999999999999999 5899999999999875
No 318
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=2.2e-15 Score=127.95 Aligned_cols=82 Identities=22% Similarity=0.494 Sum_probs=76.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34678999999999999999999999999999999999899999999999999999999998 9999999999999998
Q ss_pred cHHH
Q 006282 389 RKEE 392 (652)
Q Consensus 389 ~~~~ 392 (652)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7643
No 319
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=9.1e-16 Score=137.11 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=74.7
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||+++|+++|+++|+.|| |++|+|+.|.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3467899999999999999999999999 77999999988999999999999999999999 799999999999999887
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
.++
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 320
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.5e-14 Score=126.46 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=71.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHhhcCCcccCC--ce
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY-GYVNYANPADAARALDVLNFTPLNN--KS 100 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~-AfV~F~~~e~A~~Al~~ln~~~i~G--~~ 100 (652)
..+..-..|||+||++.+||++|+++|++||.|.+|++..+. +|+ |||+|.+.++|++|++.||+..|.| ++
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 344556778899999999999999999999999999998752 466 9999999999999999999999988 89
Q ss_pred eEeecccCCc
Q 006282 101 IRIMYSHRDP 110 (652)
Q Consensus 101 i~i~~s~~~~ 110 (652)
|+|.|++...
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999998653
No 321
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=125.03 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467999999999999999999999999997 666654 679999999999999999999999999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=5e-15 Score=138.77 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=78.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..+++|||+|||..+++++|+++|+.||.|++|+|+.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35689999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 323
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=123.11 Aligned_cols=81 Identities=26% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVR-VCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~-v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....+++|||+|||+++|+++|+++|+.||+|.+++ +.+|+.++ .|||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 344578999999999999999999999999999995 88876654 4999999999999999999999999999999
Q ss_pred ecccCC
Q 006282 104 MYSHRD 109 (652)
Q Consensus 104 ~~s~~~ 109 (652)
.|+...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998865
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.5e-15 Score=126.93 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=72.0
Q ss_pred ceeeecCC----CCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCC----HHH----HHHHHH--HhcCcE
Q 006282 312 LNLYIKNL----GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST----PEE----ASRALA--EMNGKM 376 (652)
Q Consensus 312 ~~l~V~nl----p~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s----~~~----A~~A~~--~lng~~ 376 (652)
+.|||+|| ++.+++++|+++|+.||+|.+|+++.|+ +|+|+|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999997 88999999999996 433 899988 789999
Q ss_pred ecCeeEEEEecccHH
Q 006282 377 IVSKPLYVAVAQRKE 391 (652)
Q Consensus 377 ~~g~~l~v~~~~~~~ 391 (652)
|+|+.|.|.+.+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999987643
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-16 Score=136.96 Aligned_cols=84 Identities=25% Similarity=0.512 Sum_probs=78.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeE--------EEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~--------v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~ 380 (652)
..++|||+|||.++++++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999999 889888 4689999999999999999999999999999999
Q ss_pred eEEEEecccHHHH
Q 006282 381 PLYVAVAQRKEER 393 (652)
Q Consensus 381 ~l~v~~~~~~~~r 393 (652)
.|.|.++.++..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999877544
No 326
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.9e-15 Score=128.82 Aligned_cols=79 Identities=29% Similarity=0.463 Sum_probs=72.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCe----eEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I----~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
...++|||+|||.++++++|+++|+.||.| ..+++. +|+++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 456899999999999999999999999999 455554 6889999999999999999999999999999999999
Q ss_pred EecccH
Q 006282 385 AVAQRK 390 (652)
Q Consensus 385 ~~~~~~ 390 (652)
.|+..+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999865
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=119.82 Aligned_cols=78 Identities=15% Similarity=0.395 Sum_probs=63.9
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe--cCeeEEEE
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 385 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~--~g~~l~v~ 385 (652)
....++|||+|||+++|+++|+++|++||.|++|+|+++ +||||||+|.+.++|.+ +++..+ .|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345679999999999999999999999999999999986 79999999999999983 566655 49999999
Q ss_pred ecccHHHH
Q 006282 386 VAQRKEER 393 (652)
Q Consensus 386 ~~~~~~~r 393 (652)
++.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99877543
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-15 Score=125.15 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356789999999999999999999999988766 4468899999999999999999999999999999999999997
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.9e-15 Score=136.93 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEE-----EeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV-----CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v-----~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~ 100 (652)
..++++|||+|||+++|+++|+++|+.||.|.++.+ ++...+++++|||||.|.+.++|.+|++.||+..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999999876411 222246889999999999999999999999999999999
Q ss_pred eEeecccCC
Q 006282 101 IRIMYSHRD 109 (652)
Q Consensus 101 i~i~~s~~~ 109 (652)
|+|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998754
No 330
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.4e-15 Score=123.59 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=70.4
Q ss_pred ccccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~-~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||. .+++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34578999999998 99999999999999999999984 67999999999999999999999999999999999
Q ss_pred cccHH
Q 006282 387 AQRKE 391 (652)
Q Consensus 387 ~~~~~ 391 (652)
+..+.
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97653
No 331
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.4e-14 Score=123.30 Aligned_cols=76 Identities=28% Similarity=0.527 Sum_probs=70.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|||.++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.||+..|+|+.|.|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 346789999999999999999999999999999987 4499999999999999999999999999999999998
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
.+.
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 332
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=8.5e-15 Score=120.78 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
...+.++|||+|||+++||++|+++|++||+|.+|+|.++ ++|||||+|.+.++|+++.. . ...++|+.|+|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~-~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-E-DLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-C-EEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-C-CcccCCEEEEEE
Confidence 3456889999999999999999999999999999999874 77999999999999995433 1 334579999999
Q ss_pred cccCC
Q 006282 105 YSHRD 109 (652)
Q Consensus 105 ~s~~~ 109 (652)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 88754
No 333
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3e-14 Score=120.97 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=73.5
Q ss_pred cccceeeecCCCC-----CCCHHHHHHHhhhcCCeeEEEEecCC--CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee
Q 006282 309 FQGLNLYIKNLGD-----SIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (652)
Q Consensus 309 ~~~~~l~V~nlp~-----~~te~~L~~~F~~fG~I~~v~i~~~~--~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~ 381 (652)
..+++|+|+|+-. +-++++|+++|++||.|++|+|+++. +++++|||||+|.+.++|.+|++.|||+.++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 23689999999999999999999875 3689999999999999999999999999999999
Q ss_pred EEEEecccHH
Q 006282 382 LYVAVAQRKE 391 (652)
Q Consensus 382 l~v~~~~~~~ 391 (652)
|.|.++....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999998643
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.1e-14 Score=132.26 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=70.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC--eeEEEEecc
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g--~~l~v~~~~ 388 (652)
...|||+||++.+|+++|+++|++||.|++|+|+.+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3569999999999999999999999999999997652 58899999999999999999999999965 999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=9.7e-15 Score=120.31 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=69.7
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
..++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|.|.|+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35789999999999999999999999 99999985 5799999999999999999999999999999999999864
Q ss_pred H
Q 006282 390 K 390 (652)
Q Consensus 390 ~ 390 (652)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 336
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1e-15 Score=129.78 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=72.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~-~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+ +++.+ .+|+++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5678999999999999999999999999988 55544 468899999999999999999999 99999999999999998
Q ss_pred cHH
Q 006282 389 RKE 391 (652)
Q Consensus 389 ~~~ 391 (652)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 337
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=123.23 Aligned_cols=80 Identities=30% Similarity=0.436 Sum_probs=72.6
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
....++|||+|||.++++++|+++|+.|+ +|+++.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678999999999999999999999873 67777764 788999999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9865
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8e-15 Score=125.26 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCCccEEEE--cCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCccc-----CC
Q 006282 26 QFLTTSLYV--GDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-----NN 98 (652)
Q Consensus 26 ~~~~~sL~V--~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i-----~G 98 (652)
..++++||| +||++++||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 77999999999999999999999998864 258999999999999999999999987 68
Q ss_pred ceeEeecccCCcc
Q 006282 99 KSIRIMYSHRDPS 111 (652)
Q Consensus 99 ~~i~i~~s~~~~~ 111 (652)
++|.|.|+..-+.
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 8999988775543
No 339
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.5e-15 Score=122.40 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=68.9
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCC-eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcC-cEecCeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVSKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~-I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng-~~~~g~~l~v~~ 386 (652)
...++|||+|||.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|.|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35678999999999999999999999999 6666663 488999999999999999999999 999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
+..+
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9865
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=125.31 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST---RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t---~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
..+++|||+|||+++||++|+++|++||+|. ++++.+..+ ++++|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888887 6999999999999999999999884 367777776
Q ss_pred eccc
Q 006282 104 MYSH 107 (652)
Q Consensus 104 ~~s~ 107 (652)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.1e-14 Score=125.58 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=69.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhcCcEecC--eeEEEEecc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~-afV~F~s~~~A~~A~~~lng~~~~g--~~l~v~~~~ 388 (652)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 45889999999999999999999999999998865 3678 9999999999999999999999988 999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.6e-14 Score=118.77 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=67.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
..+.++|||+|||+++|+++|+++|+.| | +|.++++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 9999998765 589999999999999999 89999
Q ss_pred ccCCceeEeec
Q 006282 95 PLNNKSIRIMY 105 (652)
Q Consensus 95 ~i~G~~i~i~~ 105 (652)
.|.|+.|+|.+
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999964
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=120.38 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.5
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
...++|||+|+ ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45689999996 89999999999999999999984 468999999999999999999999999999999999997
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=7.7e-14 Score=121.54 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHhhcCCcccCC--ceeEe
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY-GYVNYANPADAARALDVLNFTPLNN--KSIRI 103 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~-AfV~F~~~e~A~~Al~~ln~~~i~G--~~i~i 103 (652)
.....|||+||++.+|+++|+++|++||.|.+|+|... + |+ |||+|.+.++|.+|++.||+..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33455789999999999999999999999999999652 2 75 9999999999999999999999988 68999
Q ss_pred ecccCCc
Q 006282 104 MYSHRDP 110 (652)
Q Consensus 104 ~~s~~~~ 110 (652)
.|++...
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9988653
No 345
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.4e-14 Score=124.92 Aligned_cols=73 Identities=26% Similarity=0.560 Sum_probs=69.3
Q ss_pred ccceeeecCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~-~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.+ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999998 47899999999999999999999999999999999987
Q ss_pred c
Q 006282 389 R 389 (652)
Q Consensus 389 ~ 389 (652)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=4.5e-15 Score=134.44 Aligned_cols=84 Identities=26% Similarity=0.470 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEE------EEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v------~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~ 381 (652)
....++|||+|||.++|+++|+++|+.||.|.++ .+....+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4467899999999999999999999999999874 1222246889999999999999999999999999999999
Q ss_pred EEEEecccHH
Q 006282 382 LYVAVAQRKE 391 (652)
Q Consensus 382 l~v~~~~~~~ 391 (652)
|.|.+++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=3.7e-14 Score=120.44 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCC-----CCCHHHHHHHHhccCCeEEEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 26 QFLTTSLYVGDLDF-----NVTDSQLYDLFSQVGQVLSVRVCRDLST-RRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 26 ~~~~~sL~V~nLp~-----~vte~~L~~~Fs~~G~V~~i~v~~d~~t-~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
+.++++|+|+||-. +-++++|++.|++||+|.+|+|++|..+ ++++|||||+|.+.++|.+|++.||+..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34689999999962 2379999999999999999999999764 68999999999999999999999999999999
Q ss_pred eeEeecccC
Q 006282 100 SIRIMYSHR 108 (652)
Q Consensus 100 ~i~i~~s~~ 108 (652)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998764
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.6e-14 Score=125.41 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCce-----e
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS-----I 101 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~-----i 101 (652)
...++|||+|||+++|+++|+++|+.||+|.+|+|+.| |||||+|.+.++|++|++.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999876 89999999999999999999999999998 5
Q ss_pred EeecccC
Q 006282 102 RIMYSHR 108 (652)
Q Consensus 102 ~i~~s~~ 108 (652)
+|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5655443
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=119.64 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=67.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecc
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s 106 (652)
.++++|||+|||+++||++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45799999999999999999999999999999999865 679999999999999876552 35669999999998
Q ss_pred cCCcc
Q 006282 107 HRDPS 111 (652)
Q Consensus 107 ~~~~~ 111 (652)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 350
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=119.07 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=70.0
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~f--G~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
...++|||+|||..+++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999 999999875 56999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++++
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9864
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=119.14 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=71.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEE-EecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~-i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
..++|||+|||.++++++|+++|+.||.|.+|+ ++.+.. .|.|||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999995 777642 3449999999999999999999999999999999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.2e-14 Score=123.71 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=71.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
....++++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557899999996 79999999999999999999985 56789999999999999999999999999999999
Q ss_pred ecccCCcc
Q 006282 104 MYSHRDPS 111 (652)
Q Consensus 104 ~~s~~~~~ 111 (652)
.|+...+.
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=2.7e-14 Score=124.00 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=66.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCee-----EEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP-----LYV 384 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~-----l~v 384 (652)
..++|||+|||+++++++|+++|+.||.|++|+|+.+ |||||+|.+.++|.+|++.|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999876 79999999999999999999999999988 666
Q ss_pred Eeccc
Q 006282 385 AVAQR 389 (652)
Q Consensus 385 ~~~~~ 389 (652)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 65554
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=5.8e-14 Score=122.31 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=67.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhcCcEecC--eeEEEEecc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~-afV~F~s~~~A~~A~~~lng~~~~g--~~l~v~~~~ 388 (652)
..|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|.|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34789999999999999999999999999999763 386 9999999999999999999999987 699999998
Q ss_pred cH
Q 006282 389 RK 390 (652)
Q Consensus 389 ~~ 390 (652)
.+
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 355
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=114.63 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=63.6
Q ss_pred ceeeecCCCCCCCHHH----HHHHhhhc-CCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEe
Q 006282 312 LNLYIKNLGDSIDDEK----LKELFSEF-GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~----L~~~F~~f-G~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~ 386 (652)
+.|||+|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|||..+.||+|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999987 55899999 599999 22 8999999999999999999999999999999999
Q ss_pred cccH
Q 006282 387 AQRK 390 (652)
Q Consensus 387 ~~~~ 390 (652)
++.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9865
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=5.8e-14 Score=133.54 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=73.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEeecccC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~~s~~ 108 (652)
.++|||+|||+++|+++|+++|+.||+|.+|+++++.. ++++|||||+|.+.++|++|++.++ ..|.|++|+|.|...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999999864 8999999999999999999999665 589999999998765
Q ss_pred C
Q 006282 109 D 109 (652)
Q Consensus 109 ~ 109 (652)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 357
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.7e-14 Score=117.26 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=66.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.++|||+|||.++++++|+++|+.||.|.+| +....+|+ ||||+|.+.++|.+|+. |||..|+|+.|.|.++..+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 4689999999999999999999999999998 44333444 99999999999999999 9999999999999977644
No 358
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=1.3e-13 Score=113.21 Aligned_cols=70 Identities=21% Similarity=0.485 Sum_probs=66.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhc----C-------CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEF----G-------TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~f----G-------~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
..++|||+|||.++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 9999999865 899999999999999999 99999999
Q ss_pred CeeEEEE
Q 006282 379 SKPLYVA 385 (652)
Q Consensus 379 g~~l~v~ 385 (652)
|+.|.|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999987
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=9e-14 Score=121.59 Aligned_cols=77 Identities=29% Similarity=0.452 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEec
Q 006282 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~ 387 (652)
....++|||+|+ ++++++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|+..|||..++|+.|.|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 345789999996 69999999999999999999986 46899999999999999999999999999999999999
Q ss_pred ccHH
Q 006282 388 QRKE 391 (652)
Q Consensus 388 ~~~~ 391 (652)
..+.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8653
No 360
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.7e-14 Score=120.92 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=67.2
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-C---CCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~-~---g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
..++|||+|||.++++++|+++|++||.|. ++++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 8777765 3 7999999999999999999999985 3788888777
Q ss_pred eccc
Q 006282 386 VAQR 389 (652)
Q Consensus 386 ~~~~ 389 (652)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5543
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.3e-13 Score=131.18 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=73.4
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
.++|||+|||.++++++|+++|+.||.|.+|+|.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 468999999999999999999999999999999999889999999999999999999998655 5999999999998753
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.2e-13 Score=134.16 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=71.5
Q ss_pred CCCCccEEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcc
Q 006282 25 NQFLTTSLYVGDLDFNV---------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~v---------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~ 95 (652)
.....++|||+||+.++ +|++|+++|++||+|.+|+|++ ++|||||.|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34568999999999998 7999999999999999999985 46899999999999999999999999
Q ss_pred c------------CCceeEeecccCCcc
Q 006282 96 L------------NNKSIRIMYSHRDPS 111 (652)
Q Consensus 96 i------------~G~~i~i~~s~~~~~ 111 (652)
| .|+.|+|.|++.++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999998764
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.1e-14 Score=115.09 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=64.6
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEeccc
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~ 389 (652)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4578999999999999999999999999999999876 689999999999999764321 2345899999999876
Q ss_pred H
Q 006282 390 K 390 (652)
Q Consensus 390 ~ 390 (652)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2.4e-13 Score=115.47 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=72.1
Q ss_pred ccceeeecCC--CCCCC--------HHHHHHHhhhcCCeeEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhcCcE
Q 006282 310 QGLNLYIKNL--GDSID--------DEKLKELFSEFGTITSCKVMRDPS---GISKGSGFVAFSTPEEASRALAEMNGKM 376 (652)
Q Consensus 310 ~~~~l~V~nl--p~~~t--------e~~L~~~F~~fG~I~~v~i~~~~~---g~s~g~afV~F~s~~~A~~A~~~lng~~ 376 (652)
++++|.|+|+ +.++. +++|++.|++||.|++|+|+++.. ++++|||||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33443 369999999999999999998864 3689999999999999999999999999
Q ss_pred ecCeeEEEEecccHHH
Q 006282 377 IVSKPLYVAVAQRKEE 392 (652)
Q Consensus 377 ~~g~~l~v~~~~~~~~ 392 (652)
++|+.|.|.++....-
T Consensus 84 f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 84 FANRVVVTKYCDPDSY 99 (105)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred eCCCEEEEEEeCHHHH
Confidence 9999999999886643
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.2e-13 Score=134.23 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=70.4
Q ss_pred ccceeeecCCCCCC---------CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEe---
Q 006282 310 QGLNLYIKNLGDSI---------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--- 377 (652)
Q Consensus 310 ~~~~l~V~nlp~~~---------te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~--- 377 (652)
..++|||+||+..+ ++++|+++|++||.|++|+|+.+ +|||||+|.+.++|.+|++.|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 56789999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ---------cCeeEEEEecccHHHH
Q 006282 378 ---------VSKPLYVAVAQRKEER 393 (652)
Q Consensus 378 ---------~g~~l~v~~~~~~~~r 393 (652)
.|+.|.|.||......
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999976544
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=8.4e-14 Score=118.14 Aligned_cols=72 Identities=18% Similarity=0.431 Sum_probs=62.1
Q ss_pred ecCCCCCCCHHHHHHHh------------hhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEE
Q 006282 316 IKNLGDSIDDEKLKELF------------SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (652)
Q Consensus 316 V~nlp~~~te~~L~~~F------------~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~ 383 (652)
+.||+..+++++|+++| ++||.|++|+|+++..|+++|||||+|.+.++|.+|+..|||+.++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34555555665555544 999999999999998899999999999999999999999999999999999
Q ss_pred EEec
Q 006282 384 VAVA 387 (652)
Q Consensus 384 v~~~ 387 (652)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-12 Score=113.23 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred CCCCCCccEEEEcCCCCCCC-----------HHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhc
Q 006282 23 SGNQFLTTSLYVGDLDFNVT-----------DSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vt-----------e~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~l 91 (652)
...+.++++|+|+||-...+ +++|+++|++||+|.+|.| .|+ .++|||||+|.+.++|++|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34566799999999944332 6899999999999999966 543 37899999999999999999999
Q ss_pred CCcccCCceeEeecccCCccc
Q 006282 92 NFTPLNNKSIRIMYSHRDPSI 112 (652)
Q Consensus 92 n~~~i~G~~i~i~~s~~~~~~ 112 (652)
|+..|.|++|+|.|+......
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTCEETTEECEEEECCSCCCS
T ss_pred CCCEECCcEEEEEEeCCCCCc
Confidence 999999999999998765443
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=4.1e-13 Score=116.28 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=71.7
Q ss_pred ccceeeecCCC--CCC---CHHHHHHHhhhcCCeeEEEEecCC-----CCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 310 QGLNLYIKNLG--DSI---DDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 310 ~~~~l~V~nlp--~~~---te~~L~~~F~~fG~I~~v~i~~~~-----~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
++++|+|+|+- .++ .+++|++.|++||.|++|+|+++. +++++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57789999983 233 258999999999999999999874 35678999999999999999999999999999
Q ss_pred eeEEEEecccHH
Q 006282 380 KPLYVAVAQRKE 391 (652)
Q Consensus 380 ~~l~v~~~~~~~ 391 (652)
+.|.|.++....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999987643
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=7.6e-13 Score=114.56 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=72.0
Q ss_pred CccEEEEcCCC--CCC---CHHHHHHHHhccCCeEEEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHhhcCCcccCC
Q 006282 28 LTTSLYVGDLD--FNV---TDSQLYDLFSQVGQVLSVRVCRDLS----TRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (652)
Q Consensus 28 ~~~sL~V~nLp--~~v---te~~L~~~Fs~~G~V~~i~v~~d~~----t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G 98 (652)
++++|+|+|+- .++ -+++|++.|++||+|.+|+|+++.. +++++|++||+|.+.++|.+|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 58899999993 223 3789999999999999999999975 46788999999999999999999999999999
Q ss_pred ceeEeecccC
Q 006282 99 KSIRIMYSHR 108 (652)
Q Consensus 99 ~~i~i~~s~~ 108 (652)
|.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998653
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=7e-13 Score=112.61 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=72.6
Q ss_pred CCccEEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEEeeCCC--CCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 27 FLTTSLYVGDL--DFNVT--------DSQLYDLFSQVGQVLSVRVCRDLST--RRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 27 ~~~~sL~V~nL--p~~vt--------e~~L~~~Fs~~G~V~~i~v~~d~~t--~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
.+++.|.|.|+ +.++. +++|++.|++||+|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36899999999 44443 3689999999999999999999765 468999999999999999999999999
Q ss_pred ccCCceeEeecccC
Q 006282 95 PLNNKSIRIMYSHR 108 (652)
Q Consensus 95 ~i~G~~i~i~~s~~ 108 (652)
.|.||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998654
No 371
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=112.58 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=68.9
Q ss_pred ccccceeeecCCCCCCC-----------HHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcE
Q 006282 308 KFQGLNLYIKNLGDSID-----------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 376 (652)
Q Consensus 308 ~~~~~~l~V~nlp~~~t-----------e~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~ 376 (652)
...+++|+|+||-...+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|+..|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34577899999954332 5899999999999999966 443 379999999999999999999999999
Q ss_pred ecCeeEEEEecccH
Q 006282 377 IVSKPLYVAVAQRK 390 (652)
Q Consensus 377 ~~g~~l~v~~~~~~ 390 (652)
++|+.|.|.++..+
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998764
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2e-13 Score=115.81 Aligned_cols=72 Identities=26% Similarity=0.409 Sum_probs=64.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 34 VGDLDFNVTDSQLYDLF------------SQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 34 V~nLp~~vte~~L~~~F------------s~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
+.+|++.+++++|+++| ++||+|.+|+|+++.. ++++|||||.|.+.++|.+|++.||+..|.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777888777666 9999999999999865 7899999999999999999999999999999999
Q ss_pred Eeecc
Q 006282 102 RIMYS 106 (652)
Q Consensus 102 ~i~~s 106 (652)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-11 Score=103.93 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=65.9
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 29 TTSLYVGDLD-------FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 29 ~~sL~V~nLp-------~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
..+|.|.-.. .++||++|+++|++||.|.+|+|+ ++++|||||+|.+.++|++|++.++ .+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 6688887765 458999999999999999999998 3678999999999999999999754 4689999
Q ss_pred EeecccCCcc
Q 006282 102 RIMYSHRDPS 111 (652)
Q Consensus 102 ~i~~s~~~~~ 111 (652)
+|.|+...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887654
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=2e-11 Score=104.82 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=68.7
Q ss_pred ccceeeecCCCCCC----------CHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 310 QGLNLYIKNLGDSI----------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 310 ~~~~l~V~nlp~~~----------te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
++++|.++|+=..- -+++|++.|++||.|++|+|.++. ++||+||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46678888883221 135899999999999999998763 58999999999999999999999999999
Q ss_pred eeEEEEecccHHHH
Q 006282 380 KPLYVAVAQRKEER 393 (652)
Q Consensus 380 ~~l~v~~~~~~~~r 393 (652)
+.|.|.++....-.
T Consensus 83 R~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 KMITAAYVPLPTYH 96 (114)
T ss_dssp EECEEEEECHHHHH
T ss_pred EEEEEEEEcHHHHH
Confidence 99999999866443
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=103.03 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccH
Q 006282 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (652)
Q Consensus 321 ~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 390 (652)
..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|.+|++.+++ +.|++|.|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 36899999999999999999998555 67999999998754
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.6e-11 Score=125.75 Aligned_cols=77 Identities=25% Similarity=0.489 Sum_probs=67.2
Q ss_pred ccccceeeecC--CCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec---Ce--
Q 006282 308 KFQGLNLYIKN--LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SK-- 380 (652)
Q Consensus 308 ~~~~~~l~V~n--lp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~---g~-- 380 (652)
..++.+|||+| |+..+|+++|+++|++||+|++|++.. +||||||+|.+.++|.+|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 44677999999 578999999999999999999987754 4899999999999999999999999883 34
Q ss_pred eEEEEeccc
Q 006282 381 PLYVAVAQR 389 (652)
Q Consensus 381 ~l~v~~~~~ 389 (652)
.|+|.++..
T Consensus 90 ~ly~~~~~~ 98 (345)
T 3tht_A 90 TLYLNFVEK 98 (345)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEeec
Confidence 788988853
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=3.7e-11 Score=103.12 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCccEEEEcCCC--CCC--------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 25 NQFLTTSLYVGDLD--FNV--------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 25 ~~~~~~sL~V~nLp--~~v--------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
++.++++|.|.|+= .+. -+++|++.|++||.|.+|.|+++. ++|+|||.|.+.++|.+|++.||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45578899999993 221 145789999999999999997763 5799999999999999999999999
Q ss_pred ccCCceeEeecccC
Q 006282 95 PLNNKSIRIMYSHR 108 (652)
Q Consensus 95 ~i~G~~i~i~~s~~ 108 (652)
.|.||.|+|.|+..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999998753
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=3.2e-11 Score=123.49 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=64.5
Q ss_pred CCCCccEEEEcC--CCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC---Cc
Q 006282 25 NQFLTTSLYVGD--LDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN---NK 99 (652)
Q Consensus 25 ~~~~~~sL~V~n--Lp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~---G~ 99 (652)
...++.+|||+| |+.++||++|+++|++||.|.+|++.+ ++|||||+|.+.+||++|++.||+..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456789999999 578999999999999999999987743 4589999999999999999999998773 44
Q ss_pred --eeEeecc
Q 006282 100 --SIRIMYS 106 (652)
Q Consensus 100 --~i~i~~s 106 (652)
++.+.+.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4555554
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=9e-10 Score=94.48 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=73.9
Q ss_pred ccccccceeeecCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCC-HHHHHHHHHHhc--CcEecCee
Q 006282 306 VDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST-PEEASRALAEMN--GKMIVSKP 381 (652)
Q Consensus 306 ~~~~~~~~l~V~nlp~~-~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s-~~~A~~A~~~ln--g~~~~g~~ 381 (652)
..-..++.|||+||+++ +++++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|+..+| +..|.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 34557899999999999 99999999999999999999998743 69999999 899999999995 77889999
Q ss_pred EEEEecccHHHHH
Q 006282 382 LYVAVAQRKEERR 394 (652)
Q Consensus 382 l~v~~~~~~~~r~ 394 (652)
+.+.+..-.+++.
T Consensus 88 ~~~evL~GeeE~~ 100 (121)
T 1owx_A 88 VTWEVLEGEVEKE 100 (121)
T ss_dssp EEEEECCHHHHHH
T ss_pred EEEEECCCHHHHH
Confidence 9999887666554
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=8.3e-10 Score=88.45 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=62.6
Q ss_pred cccceeeecCCC----CCCCH----HHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCe
Q 006282 309 FQGLNLYIKNLG----DSIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (652)
Q Consensus 309 ~~~~~l~V~nlp----~~~te----~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~ 380 (652)
++..+|+|.-.+ .++-+ .+|.+.|+.||+|..++++.| .+||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 445577777665 34444 689999999999999999987 39999999999999998 999999999
Q ss_pred eEEEEeccc
Q 006282 381 PLYVAVAQR 389 (652)
Q Consensus 381 ~l~v~~~~~ 389 (652)
.|+|+++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999875
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=85.39 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=63.9
Q ss_pred CCCccEEEEcCCCC----CCCH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 26 QFLTTSLYVGDLDF----NVTD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 26 ~~~~~sL~V~nLp~----~vte----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
.++..+|+|.-++. ++-. .+|.+.|++||.|.++|+..|. +||+|.+.++|.+|++ ||+..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 34577899988772 3433 6689999999999999999873 8999999999999999 9999999
Q ss_pred CceeEeecccCC
Q 006282 98 NKSIRIMYSHRD 109 (652)
Q Consensus 98 G~~i~i~~s~~~ 109 (652)
||.|+|.+...+
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999877654
No 382
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2e-09 Score=92.35 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHhhcC--CcccCCcee
Q 006282 26 QFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN-PADAARALDVLN--FTPLNNKSI 101 (652)
Q Consensus 26 ~~~~~sL~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~-~e~A~~Al~~ln--~~~i~G~~i 101 (652)
=..++.|||+||+++ +++++|+++|+.||+|..|.+.+|.. .|||.|.+ .++|..|+..+| +..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346899999999999 99999999999999999999998865 49999999 899999999995 677889888
Q ss_pred Eeecc
Q 006282 102 RIMYS 106 (652)
Q Consensus 102 ~i~~s 106 (652)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77543
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=6.3e-09 Score=83.71 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=63.5
Q ss_pred ccccceeeecCCCC-----CCCH----HHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEec
Q 006282 308 KFQGLNLYIKNLGD-----SIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (652)
Q Consensus 308 ~~~~~~l~V~nlp~-----~~te----~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~ 378 (652)
.++..+|+|.-++. ++-+ .+|.+.|+.||+|..+++..| -+||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 45667888888763 2333 579999999999999999998 39999999999999998 9999999
Q ss_pred CeeEEEEeccc
Q 006282 379 SKPLYVAVAQR 389 (652)
Q Consensus 379 g~~l~v~~~~~ 389 (652)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=1.3e-08 Score=98.99 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEecCC-----CCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecccHHH
Q 006282 322 SIDDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392 (652)
Q Consensus 322 ~~te~~L~~~F~~fG~I~~v~i~~~~-----~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 392 (652)
+-.+++|++.|++||.|.+++|.++. +++++|++||+|.+.++|.+|+..|||+.++||.|.+.+....+-
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 34568999999999999999998653 458999999999999999999999999999999999999886543
No 385
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.3e-08 Score=81.80 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=63.3
Q ss_pred CCCCCccEEEEcCCCCC-----CCH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 24 GNQFLTTSLYVGDLDFN-----VTD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 24 ~~~~~~~sL~V~nLp~~-----vte----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
...++..+|+|.-++++ +-. .+|.+.|++||.|..+|+..|. +||+|.+.++|.+|++ ||+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34556889999998754 322 4588999999999999999884 9999999999999999 9999
Q ss_pred ccCCceeEeecc
Q 006282 95 PLNNKSIRIMYS 106 (652)
Q Consensus 95 ~i~G~~i~i~~s 106 (652)
.+.||.|+|.+-
T Consensus 81 ~v~Gr~L~V~~k 92 (95)
T 1ufw_A 81 KVKGRAVKISGP 92 (95)
T ss_dssp EETTEEEEEECC
T ss_pred eeCCeEEEEecc
Confidence 999999999763
No 386
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=2.9e-08 Score=96.47 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=67.6
Q ss_pred ccEEEEcCCC-----CCCCHHHHHHHHhccCCeEEEEEEeeCCCC----CcccEEEEEeCCHHHHHHHHhhcCCcccCCc
Q 006282 29 TTSLYVGDLD-----FNVTDSQLYDLFSQVGQVLSVRVCRDLSTR----RSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (652)
Q Consensus 29 ~~sL~V~nLp-----~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~----~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~ 99 (652)
+..+.+.++- .+-.+++|++.|++||.|.+++|+++..++ +++|++||+|.+.++|.+|++.||+..|.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555552 223578899999999999999999776554 8999999999999999999999999999999
Q ss_pred eeEeecccC
Q 006282 100 SIRIMYSHR 108 (652)
Q Consensus 100 ~i~i~~s~~ 108 (652)
.|++.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998764
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=8.3e-07 Score=72.64 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=67.0
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhc-----CCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEF-----GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~f-----G~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
..++|-+-||||.+++..|+.+.++| |.|+.+.+..|.. -|+|+|.+...|.+|.-.|+|..|.|+.|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35689999999999999999999999 9999999999954 4999999999999999999999999999998
Q ss_pred Eec
Q 006282 385 AVA 387 (652)
Q Consensus 385 ~~~ 387 (652)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 743
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=8.9e-05 Score=60.34 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhc-----cCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeE
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~-----~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~ 102 (652)
...+|.|.|||++++++.|.-+|+. =|+|.+++... +-|+|.|.+.+.|++.|+. ....|+|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4689999999999999999999976 25999987754 3699999999999999994 35678899999
Q ss_pred eecccCCcccccCCCcceeecCCCcccc
Q 006282 103 IMYSHRDPSIRKSGTGNIFIKNLDKSID 130 (652)
Q Consensus 103 i~~s~~~~~~~~~~~~~lfV~nLp~~~t 130 (652)
|..... ....++++.+|++.++
T Consensus 78 V~P~~~------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPP------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCC------CCCCCCCCCSCCCCCC
T ss_pred EEcCCC------CCcceEeeecCCCCCC
Confidence 974322 1245799999998765
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=9.8e-05 Score=60.51 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCcee
Q 006282 27 FLTTSLYVGDLDFNVTDSQLYDLFSQV-----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (652)
Q Consensus 27 ~~~~sL~V~nLp~~vte~~L~~~Fs~~-----G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i 101 (652)
...++|-+-+||..++.+.|+.+.+.+ |.+..|.+..|- +-|+|+|.+..+|-+|.-.|++..|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346899999999999999999999999 999999887763 469999999999999998899999999999
Q ss_pred Eee
Q 006282 102 RIM 104 (652)
Q Consensus 102 ~i~ 104 (652)
+|.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 984
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=5.6e-05 Score=61.90 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=63.2
Q ss_pred ccEEEEcCCCCCC-CH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEe
Q 006282 29 TTSLYVGDLDFNV-TD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (652)
Q Consensus 29 ~~sL~V~nLp~~v-te----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i 103 (652)
-++|+|.||+.+| +. +.++++|..|+++.+....+. ..=.-|+|.++++|.+|...|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999999876 32 467899999999988777653 223689999999999999999999999999999
Q ss_pred ecccCC
Q 006282 104 MYSHRD 109 (652)
Q Consensus 104 ~~s~~~ 109 (652)
.+.+..
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998843
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00012 Score=59.88 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=63.3
Q ss_pred cceeeecCCCCCC-CH----HHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEE
Q 006282 311 GLNLYIKNLGDSI-DD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (652)
Q Consensus 311 ~~~l~V~nlp~~~-te----~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~ 385 (652)
.++|+|.||+.++ .. +.++++|..|+.+.+...++. =.-..|.|.+.++|.+|...||+..++|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4579999998766 32 577999999999998887764 2358999999999999999999999999999999
Q ss_pred ecc
Q 006282 386 VAQ 388 (652)
Q Consensus 386 ~~~ 388 (652)
+++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 998
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.45 E-value=0.00037 Score=56.12 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC--cccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR--SLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 30 ~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~--s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
+.|.||+||+.+||+++.+.++.+..+....-+..+.+.+ ...-|||+|.+.+++....+.+++..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998888777777665433 3357999999999999999999877663
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.14 E-value=0.0019 Score=51.89 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=47.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC
Q 006282 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (652)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln 92 (652)
...+.-.-.++| ++|.++...||.++|+.||-| .|+=+.| | -|||.|.+++.|..|+..++
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 333444567777 999999999999999999854 3444444 3 69999999999999999764
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.0021 Score=52.33 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=57.3
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhh-----cCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEE
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSE-----FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~-----fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v 384 (652)
.+++|.|.|||..++++.|.-+|+. -|.|.+++... +-|+|+|.+.+.|++.++ -....+.+.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4678999999999999999999986 36899998765 369999999999999886 3355777788888
Q ss_pred Ee
Q 006282 385 AV 386 (652)
Q Consensus 385 ~~ 386 (652)
.-
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 73
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.003 Score=53.19 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCC-ceeEe
Q 006282 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-KSIRI 103 (652)
Q Consensus 25 ~~~~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G-~~i~i 103 (652)
.....+.|.|-+.|++ .-..|.+.|++||.|.+.... ....+.+|.|.+..+|++||. .|+..|.| -.|-|
T Consensus 20 ~~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 3455789999999988 477788899999999988762 123599999999999999999 69988875 44555
Q ss_pred ecc
Q 006282 104 MYS 106 (652)
Q Consensus 104 ~~s 106 (652)
.+.
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.005 Score=51.87 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=60.1
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecC-eeEEEEec
Q 006282 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVA 387 (652)
Q Consensus 309 ~~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g-~~l~v~~~ 387 (652)
...+.|.|-+.+.+. ...|..+|+.||+|.+..... ...+-.|.|.+..+|.+|+. .||..++| -.|-|..-
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 345689999999884 677889999999999988621 25699999999999999999 79999985 56666654
Q ss_pred ccH
Q 006282 388 QRK 390 (652)
Q Consensus 388 ~~~ 390 (652)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 433
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.56 E-value=0.003 Score=50.93 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=43.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcC
Q 006282 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (652)
Q Consensus 31 sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln 92 (652)
.++| ++|.++...||.++|+.||-| .|+=+-| | -|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999933 3444444 3 69999999999999999775
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.51 E-value=0.0048 Score=49.55 Aligned_cols=54 Identities=30% Similarity=0.450 Sum_probs=45.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln 373 (652)
..++| ++|.++.-.||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999844 46666663 69999999999999999764
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.38 E-value=0.0024 Score=51.65 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=51.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC--cccEEEEEeCCHHHHHHHHhhcCCcccC
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR--SLGYGYVNYANPADAARALDVLNFTPLN 97 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~--s~g~AfV~F~~~e~A~~Al~~ln~~~i~ 97 (652)
.+-.|.||.||+.+||+++.+.++.+=.+....-+..+.+.+ ...-|||+|.+.+|.....+..++..|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 466899999999999999988887764443333333332221 2256999999999999999999887663
No 400
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.33 E-value=0.015 Score=46.79 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=56.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC---CCCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~---~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
++|.|++||..+|++++.+.++....+.....+... .-..-.-|+|.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999999887766665443 12234569999999999999999999998853
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.18 E-value=0.0052 Score=49.52 Aligned_cols=53 Identities=28% Similarity=0.420 Sum_probs=45.4
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln 373 (652)
.++| ++|.++.-.||.++|+.|| =..|+.+.|. .|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4667 9999999999999999998 4456666664 69999999999999999764
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.88 E-value=0.0035 Score=66.28 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=44.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhh
Q 006282 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90 (652)
Q Consensus 28 ~~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ 90 (652)
..+||+|. .|..+++++|.++|++||+|.++....++. -||.|+|.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 36899998 799999999999999999999987776543 5999999999999988774
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.27 E-value=0.027 Score=48.04 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=57.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEE-EecCC-------------CC-CCccEEEEEeCCHHHHHHHHHHhcCcE
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDP-------------SG-ISKGSGFVAFSTPEEASRALAEMNGKM 376 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~-i~~~~-------------~g-~s~g~afV~F~s~~~A~~A~~~lng~~ 376 (652)
+.|.|-+.|.+. ...+-+.|++||.|.+.. +.++. -+ ...++.-|+|++..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 357788886654 456778999999997732 21100 00 135688999999999999998 99999
Q ss_pred ecCeeEEEEecccH
Q 006282 377 IVSKPLYVAVAQRK 390 (652)
Q Consensus 377 ~~g~~l~v~~~~~~ 390 (652)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877543
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.81 E-value=0.026 Score=48.12 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=54.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEeeC------------CCC-CcccEEEEEeCCHHHHHHHHhhcCCc
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLS-VRVCRDL------------STR-RSLGYGYVNYANPADAARALDVLNFT 94 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~-i~v~~d~------------~t~-~s~g~AfV~F~~~e~A~~Al~~ln~~ 94 (652)
.+.|.|-+.|++ ....+.+.|++||.|.+ +.+.++. ... ...++..|.|.+..+|.+||. .|+.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 567888899776 56677789999999866 2111100 000 124688999999999999999 6999
Q ss_pred ccCCceeEeecc
Q 006282 95 PLNNKSIRIMYS 106 (652)
Q Consensus 95 ~i~G~~i~i~~s 106 (652)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987766654
No 405
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.53 E-value=0.067 Score=56.49 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.9
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 006282 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370 (652)
Q Consensus 312 ~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~ 370 (652)
++|+|. .+..+++.+|.++|+.||.|.++....+ .| -|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SS---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CC---eEEEEEeCCHHHHHHHHh
Confidence 479997 7999999999999999999999977654 23 599999999999987765
No 406
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.45 E-value=0.16 Score=41.03 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=50.8
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCC--C-CCCccEEEEEeCCHHHHHHHHHHhcCcEecC
Q 006282 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--S-GISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (652)
Q Consensus 311 ~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~--~-g~s~g~afV~F~s~~~A~~A~~~lng~~~~g 379 (652)
+-+|.|++||+.+|++++.+.++..=++.....+... . ...-..|+|.|.+.++.....+.++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3469999999999999999998876554322222111 1 1123458999999999999999999998853
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.64 E-value=1.9 Score=46.39 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=45.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCC
Q 006282 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93 (652)
Q Consensus 29 ~~sL~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~ 93 (652)
...++|+ +|..+...+|.++|+.||.| +|+-+-| ..|||.|.+.++|..++++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4577787 99999999999999999954 4443332 2699999999999999998863
No 408
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=80.32 E-value=0.34 Score=51.22 Aligned_cols=6 Identities=67% Similarity=1.054 Sum_probs=2.4
Q ss_pred ceeecC
Q 006282 119 NIFIKN 124 (652)
Q Consensus 119 ~lfV~n 124 (652)
++++-+
T Consensus 70 ~~ll~~ 75 (448)
T 2z73_A 70 NMFIIN 75 (448)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 344433
No 409
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.13 E-value=3.5 Score=44.28 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=44.0
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 006282 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~ln 373 (652)
.++|+ ++..|...+|.+.|+.||. .+|+.+.+ ..|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 45665 8889999999999999995 45666655 279999999999999999885
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.27 E-value=21 Score=26.83 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHhhhcCC-----eeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcEecCeeEEEEecc
Q 006282 321 DSIDDEKLKELFSEFGT-----ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (652)
Q Consensus 321 ~~~te~~L~~~F~~fG~-----I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~lng~~~~g~~l~v~~~~ 388 (652)
+.++..+|..++..-+. |-.++|..+ |.||+-.. +.|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45666777777765443 556777655 89999977 77899999999999999999988764
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.47 E-value=47 Score=24.80 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=40.7
Q ss_pred EEEEcCCC-CCCCHHHHHHHHhccC-----CeEEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHhhcCCcccCCceeEee
Q 006282 31 SLYVGDLD-FNVTDSQLYDLFSQVG-----QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (652)
Q Consensus 31 sL~V~nLp-~~vte~~L~~~Fs~~G-----~V~~i~v~~d~~t~~s~g~AfV~F~~~e~A~~Al~~ln~~~i~G~~i~i~ 104 (652)
+|||.-=. ..++..+|..++..-+ .|-.|+|..+ |.||+-... .|.++++.|+...++|+.++|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553322 3466677777665433 5677877543 788887654 4778888898889999999886
Q ss_pred cc
Q 006282 105 YS 106 (652)
Q Consensus 105 ~s 106 (652)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.70 E-value=1.8e+02 Score=22.47 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=45.9
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 310 ~~~~l~V~nlp~~~te~~L~~~F~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
+.|-|.|-|+|..+-..++.-.....|---.|..+. |.|.+.|.+.++-.-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHH
Confidence 467788999999998888877777777666666553 36999999999999999976
No 413
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=28.20 E-value=70 Score=18.81 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006282 613 EALKAKVAEAMEVLRSVAQ 631 (652)
Q Consensus 613 ~~l~~~~~~a~~~l~~~~~ 631 (652)
+.|+.||+|--++|+....
T Consensus 9 ~lLKKKIEEQr~i~~~~~H 27 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHH 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5799999999999987654
No 414
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.03 E-value=2.2e+02 Score=21.95 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=44.9
Q ss_pred cceeecCCCccccHHHHHhhhccCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 006282 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178 (652)
Q Consensus 118 ~~lfV~nLp~~~t~~~L~~~Fs~fG~I~~~~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 178 (652)
.-|.|-|+|..+-..++.......|--.-|..+ .|.+.+.|.+.++-+-|+.++
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 346778999998888998888888876667654 467999999999999999886
No 415
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.62 E-value=1.5e+02 Score=28.29 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=41.6
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhcc-------CCeEEEEEEeeCCCCCcccEEEEE
Q 006282 29 TTSLYVGDLDF-NVTDSQLYDLFSQV-------GQVLSVRVCRDLSTRRSLGYGYVN 77 (652)
Q Consensus 29 ~~sL~V~nLp~-~vte~~L~~~Fs~~-------G~V~~i~v~~d~~t~~s~g~AfV~ 77 (652)
++.|-|..+.. +++|++|...++++ .++-.+.+...+..||++-|.|..
T Consensus 166 TTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 166 TTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp SEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred hheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 57888999976 57999999999977 478888888888899999999974
No 416
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=24.31 E-value=34 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=18.8
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 006282 603 TEVLHLLESPEALKAKVAEAM 623 (652)
Q Consensus 603 ~~~~~~~~~~~~l~~~~~~a~ 623 (652)
.-|++||.+.+.+-.+|-||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 448999999999999999997
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.14 E-value=87 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=34.9
Q ss_pred eeecCCCC-C--------CCHHHHHHHh--hhcCCeeEEEEecCCCCCCccEEEEEeCCHHH
Q 006282 314 LYIKNLGD-S--------IDDEKLKELF--SEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364 (652)
Q Consensus 314 l~V~nlp~-~--------~te~~L~~~F--~~fG~I~~v~i~~~~~g~s~g~afV~F~s~~~ 364 (652)
+.|-|++. . .+..+|++.| +.|.. ..|+.+.+..| .+|++.|.|.+--.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p-~kv~~l~~~~G-h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNP-TRVRPLWNYLG-HSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCC-SEEEEEECSSB-EEEEEEEECCSSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCC-ceeEecccCCC-CceeEEEEecCChH
Confidence 45667765 2 3457999977 99965 45777777666 47899999997543
No 418
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.09 E-value=1.4e+02 Score=23.16 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred eeeecCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 006282 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (652)
Q Consensus 313 ~l~V~nlp~~~te~~L~~~F~~-fG-~I~~v~i~~~~~g~s~g~afV~F~s~~~A~~A~~~l 372 (652)
+-|+-..+...+..+|++.++. |+ .|.+|..+.-+.|.-+ |+|++....+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KK--A~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKK--AYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEE--EEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceE--EEEEcCCCCcHHHHHHhh
No 419
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.29 E-value=95 Score=22.99 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.7
Q ss_pred chhhhh-hhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 006282 590 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 632 (652)
Q Consensus 590 a~kitg-mll~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 632 (652)
...|+| .||.|+..+|-.|==..---+.||-.|+.-|+....+
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~ek 73 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLEK 73 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 345776 6888999997776333344688899999988876543
Done!